RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12132
(126 letters)
>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId:
9606]}
Length = 101
Score = 59.9 bits (144), Expect = 1e-13
Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
E+ V P W + I + + S L + + G Y N
Sbjct: 18 VELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN 77
Query: 71 NLGSSQQFIQLS--GIPNIPVF 90
LGS Q + L+ P+ P
Sbjct: 78 KLGSRQAQVNLTVVDKPDPPAG 99
>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}
Length = 97
Score = 57.5 bits (138), Expect = 9e-13
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLV-RHIKDTDFGNYMCQAS 69
+ C NP + W ++G RI + +H L+ + +D GNY C
Sbjct: 23 VKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVE 82
Query: 70 NNLGSSQQFIQLS 82
N GS L
Sbjct: 83 NEYGSINHTYHLD 95
>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis
elegans) [TaxId: 6239]}
Length = 97
Score = 50.7 bits (120), Expect = 4e-10
Identities = 17/73 (23%), Positives = 32/73 (43%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
A C V A+ P V W +D + + + + L + +K D G Y +A
Sbjct: 18 SANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAK 77
Query: 70 NNLGSSQQFIQLS 82
N+ G+ ++ + L+
Sbjct: 78 NSYGTKEEIVFLN 90
>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different
modules [TaxId: 9606]}
Length = 91
Score = 48.7 bits (115), Expect = 2e-09
Identities = 16/73 (21%), Positives = 29/73 (39%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
A C+ P V W R G ++ R + + K + + ++ +D GNY
Sbjct: 16 SARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVE 75
Query: 70 NNLGSSQQFIQLS 82
N+ G + L+
Sbjct: 76 NSEGKQEAEFTLT 88
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 89
Score = 48.2 bits (114), Expect = 4e-09
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
I C V P V W + ++ G L+++ +K+ D G Y C+A+
Sbjct: 20 DVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTD-----SGLVIKGVKNGDKGYYGCRAT 74
Query: 70 NNLGSSQQFIQLS 82
N G +
Sbjct: 75 NEHGDKYFETLVQ 87
>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 100
Score = 48.3 bits (114), Expect = 5e-09
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS--LLVRHIKDTDFGNYMCQA 68
++C+ P + W +DG I D S L +R++ D Y+C A
Sbjct: 23 VTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA 82
Query: 69 SNNLGSSQQFIQLS 82
N G I L
Sbjct: 83 ENKAGEQDASIHLK 96
>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor
TrkA, different domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 107
Score = 46.5 bits (109), Expect = 3e-08
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 7/77 (9%)
Query: 13 IICNVYANPPAKVEWFRDGTAITLGGRIDMHV-------SSEKHSLLVRHIKDTDFGNYM 65
I +V P + W +G+ + I + L + + GNY
Sbjct: 20 IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79
Query: 66 CQASNNLGSSQQFIQLS 82
A+N G + I +
Sbjct: 80 LLAANPFGQASASIMAA 96
>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}
Length = 109
Score = 45.7 bits (107), Expect = 4e-08
Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 13/85 (15%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAI-------------TLGGRIDMHVSSEKHSLLVRHIK 57
E +C VY++ ++W + L E L +R++
Sbjct: 23 VEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT 82
Query: 58 DTDFGNYMCQASNNLGSSQQFIQLS 82
D G Y C A N++G S L+
Sbjct: 83 FEDAGEYTCLAGNSIGISFHSAWLT 107
>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different
modules [TaxId: 9606]}
Length = 98
Score = 44.5 bits (104), Expect = 1e-07
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLV-RHIKDTDFGNYMCQA 68
A V P + EW+++G I RI + + LV R + D + M +A
Sbjct: 21 DAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKA 80
Query: 69 SNNLGSSQQFIQLS 82
N G + L
Sbjct: 81 INIAGETSSHAFLL 94
>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 45.1 bits (105), Expect = 1e-07
Identities = 10/76 (13%), Positives = 20/76 (26%)
Query: 7 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 66
+ F GR+ + + ++ V + D G Y
Sbjct: 52 KAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTV 111
Query: 67 QASNNLGSSQQFIQLS 82
N +G Q + +
Sbjct: 112 TVKNPVGEDQVNLTVK 127
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 91
Score = 44.0 bits (103), Expect = 1e-07
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
+ C + NP +++W + + T S + L ++++ D G Y C+A N
Sbjct: 23 VTLECFAFGNPVPQIKWRKLDGSQT------SKWLSSEPLLHIQNVDFEDEGTYECEAEN 76
Query: 71 NLGSSQQFIQLS 82
G ++
Sbjct: 77 IKGRDTYQGRII 88
>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 43.8 bits (102), Expect = 2e-07
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 7/88 (7%)
Query: 7 PDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKH-----SLLVRHIKDTDF 61
D I V NP ++WF +G + I + H L + + +
Sbjct: 15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNN 74
Query: 62 GNYMCQASNNLGSSQQFIQLS--GIPNI 87
G+Y A N G ++ I G P I
Sbjct: 75 GDYTLIAKNEYGKDEKQISAHFMGWPGI 102
>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 43.3 bits (101), Expect = 3e-07
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSE--KHSLLVRHIKDTDFGNYMCQ 67
R E+ C V + A V+WF++G I G + + E KH L++ D Y
Sbjct: 17 RVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVM 75
Query: 68 ASNNLGSSQQFIQL 81
+ S++ + L
Sbjct: 76 TTGGQSSAKLSVDL 89
>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 41.9 bits (97), Expect = 1e-06
Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 4/73 (5%)
Query: 13 IICNVYANPPAKVEWFRDGTAITLG----GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
I V NPP + W +G + + LL + GNY A
Sbjct: 22 IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIA 81
Query: 69 SNNLGSSQQFIQL 81
N LG++ Q I
Sbjct: 82 KNPLGTANQTING 94
>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 110
Score = 42.3 bits (98), Expect = 1e-06
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 10 RAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSE--------KHSLLVRHIKDTD 60
RA + C+ + +PP++ WF+DG ++ L+ + D
Sbjct: 19 RAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFD 78
Query: 61 FGNYMCQASNNLGSSQ 76
G Y CQA N G++
Sbjct: 79 SGEYYCQAQNGYGTAM 94
>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 41.8 bits (97), Expect = 1e-06
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 11 AEIICNVYANPP-AKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
C + N + W++D + + + K L K D G+Y C
Sbjct: 20 DVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVR 79
Query: 70 NNLGSSQQFIQLSGIPNIP 88
N+ + I + N P
Sbjct: 80 NSSYCLRIKISAKFVENEP 98
>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 97
Score = 41.8 bits (97), Expect = 1e-06
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
+ + C ANPPA W +GT + +G + ++ +K D G+Y C A+
Sbjct: 24 KVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLV-AGDLVISNPVKAKDAGSYQCVAT 82
Query: 70 NNLGS 74
N G+
Sbjct: 83 NARGT 87
>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 92
Score = 41.1 bits (95), Expect = 2e-06
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
A I+C+V ++ P + W G + + + + L +R IK TD G Y C+
Sbjct: 18 DAVIVCDVVSSLPPTIIWKHKGRDVI-LKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGR 76
Query: 70 NNLGSSQQFIQL 81
F +
Sbjct: 77 ILARGEINFKDI 88
>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2
(ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 40.7 bits (94), Expect = 4e-06
Identities = 12/88 (13%), Positives = 26/88 (29%), Gaps = 7/88 (7%)
Query: 10 RAEIICNV---YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHS--LLVRHIKDTDFGNY 64
I C V + FR + + ++ + ++ N+
Sbjct: 19 SFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNF 78
Query: 65 MCQASNNLGSS--QQFIQLSGIPNIPVF 90
C A +L S F + S + ++
Sbjct: 79 SCLAVLDLMSRGGNIFHKHSAPKMLEIY 106
>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)
[TaxId: 9103]}
Length = 102
Score = 40.6 bits (94), Expect = 4e-06
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLV-RHIKDTDFGNYMCQA 68
A C V P +V WF+D + + E + L + D Y C+A
Sbjct: 25 AARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKA 84
Query: 69 SNNLGSSQQFIQLS 82
N+LG + +L
Sbjct: 85 VNSLGEATCTAELL 98
>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 94
Score = 40.0 bits (92), Expect = 5e-06
Identities = 10/67 (14%), Positives = 23/67 (34%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
+ C + N ++ + + ++ SL+ + +D G+Y C A
Sbjct: 19 PTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAE 78
Query: 70 NNLGSSQ 76
G +
Sbjct: 79 TPAGVAS 85
>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 39.8 bits (92), Expect = 5e-06
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 10 RAEIICNVYANPPAKVEWFRDG-TAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
+ + + A+ A+V+W ++G G + K +L + D Y C
Sbjct: 23 KIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV 81
Query: 69 SNNLGSSQQFIQ 80
S++ F++
Sbjct: 82 GGEKCSTELFVK 93
>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1
(ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 40.2 bits (93), Expect = 5e-06
Identities = 9/79 (11%), Positives = 18/79 (22%), Gaps = 5/79 (6%)
Query: 14 ICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
+ V R + + V +D + C+ +L
Sbjct: 28 VEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVT---TTVLVRRDHHGAQFSCRTELDLR 84
Query: 74 S--SQQFIQLSGIPNIPVF 90
+ F S + F
Sbjct: 85 PQGLELFENTSAPYQLQTF 103
>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 89
Score = 39.6 bits (91), Expect = 7e-06
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 10 RAEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQA 68
IC + PA + W R +D + L +R+++ +D G Y+C
Sbjct: 19 DVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFN-----GILTIRNVQPSDAGTYVCTG 73
Query: 69 SNNLGSSQQFIQLS 82
SN Q L
Sbjct: 74 SNMFAMDQGTATLH 87
>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 39.6 bits (91), Expect = 9e-06
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAIT--LGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQ 67
++ C+V ++W +DG + I + L ++ ++ +D G Y CQ
Sbjct: 13 PVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQ 72
Query: 68 ASNNLGSS 75
+ +
Sbjct: 73 VEDGGETE 80
>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 89
Score = 39.1 bits (90), Expect = 9e-06
Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 4/73 (5%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
C P V W RDG + + L + D G Y C A
Sbjct: 18 DLRWSCVASGKPRPAVRWLRDGQPLAS----QNRIEVSGGELRFSKLVLEDSGMYQCVAE 73
Query: 70 NNLGSSQQFIQLS 82
N G+ +L+
Sbjct: 74 NKHGTVYASAELT 86
>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 39.6 bits (91), Expect = 1e-05
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 10 RAEIICNVYA-NPPAKVEWFRDGTAITLGGRIDMHVSSEKH-------SLLVRHIKDTDF 61
RA + C+ +PP++ WF+DG + + S+ + L+ + +D
Sbjct: 19 RAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDT 78
Query: 62 GNYMCQASNNLGSSQ 76
G Y C+A N G+
Sbjct: 79 GEYSCEARNGYGTPM 93
>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 105
Score = 38.9 bits (89), Expect = 2e-05
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 5/78 (6%)
Query: 14 ICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
P W + + VS +L + + +D GNY C A++++
Sbjct: 26 CSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHID 85
Query: 74 SSQ-----QFIQLSGIPN 86
+F QLS
Sbjct: 86 FITKSVFSKFSQLSLAAE 103
>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans)
[TaxId: 6239]}
Length = 93
Score = 38.0 bits (87), Expect = 3e-05
Identities = 13/71 (18%), Positives = 23/71 (32%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
+ + P W + L + + S S+ K D GNY + N
Sbjct: 20 HNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKN 79
Query: 71 NLGSSQQFIQL 81
LG + ++
Sbjct: 80 ELGEDEAIFEV 90
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 37.5 bits (86), Expect = 5e-05
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Query: 9 MRAEIICNVYA------NPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG 62
++C N K++W++D + L H S K L+V ++ + G
Sbjct: 15 GDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNI---HFSGVKDRLIVMNVAEKHRG 71
Query: 63 NYMCQASNNLGSSQQFIQLS 82
NY C AS Q I
Sbjct: 72 NYTCHASYTYLGKQYPITRV 91
>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein
phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 37.3 bits (85), Expect = 6e-05
Identities = 12/70 (17%), Positives = 15/70 (21%), Gaps = 3/70 (4%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTA---ITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMC 66
A C+ A + G L S V + D G Y C
Sbjct: 18 FATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRC 77
Query: 67 QASNNLGSSQ 76
G
Sbjct: 78 MIRTEGGVGI 87
>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 36.6 bits (83), Expect = 1e-04
Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 8/80 (10%)
Query: 10 RAEIICNVYANPPAKV-------EWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDF- 61
A ++C + PP + R + S + L + ++
Sbjct: 19 TAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADP 78
Query: 62 GNYMCQASNNLGSSQQFIQL 81
G Y C +++ GS Q I L
Sbjct: 79 GQYRCNGTSSKGSDQAIITL 98
>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 97
Score = 36.4 bits (83), Expect = 1e-04
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDM--HVSSEKHSLLVRHIKDTDFGNYMCQA 68
I C +NP +F++G + + H + LL + D G Y C+
Sbjct: 21 TMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEV 80
Query: 69 SNNLGSSQ 76
N +G Q
Sbjct: 81 DNGVGKPQ 88
>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C,
different domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 36.6 bits (83), Expect = 1e-04
Identities = 9/56 (16%), Positives = 15/56 (26%)
Query: 27 WFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 82
+ G + L D L + + G Y C+ S L+
Sbjct: 50 SSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLT 105
>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 36.3 bits (82), Expect = 2e-04
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 13/85 (15%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRI------------DMHVSSEKHSLLVRHIK 57
+ ++ICNV W +G+ I + + S+ L + I+
Sbjct: 19 QIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIE 78
Query: 58 DTDFG-NYMCQASNNLGSSQQFIQL 81
+ + C A N G +IQL
Sbjct: 79 SRFYKHPFTCFAKNTHGIDAAYIQL 103
>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 126
Score = 36.6 bits (83), Expect = 2e-04
Identities = 7/40 (17%), Positives = 20/40 (50%)
Query: 42 MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 81
+ K +L +++++ +D G Y C ++ + ++L
Sbjct: 74 ESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL 113
>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 35.7 bits (81), Expect = 2e-04
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 3/59 (5%)
Query: 17 VYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSS 75
V A V W A + LL+R ++ D GNY C + +
Sbjct: 31 VEPEDNATVHWVLRKPAAG---SHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPAGT 86
>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1,
ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 34.6 bits (78), Expect = 5e-04
Identities = 10/81 (12%), Positives = 28/81 (34%), Gaps = 14/81 (17%)
Query: 3 SITAPD-MRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDF 61
+ T P+ + +C + NP +++ + + +
Sbjct: 13 NWTWPENSQQTPMCQAWGNPLPELKCLK-------------DGTFPLPIGESVTVTRDLE 59
Query: 62 GNYMCQASNNLGSSQQFIQLS 82
G Y+C+A + G + + ++
Sbjct: 60 GTYLCRARSTQGEVTREVTVN 80
>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor
receptor TrkA, different domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 92
Score = 34.3 bits (77), Expect = 7e-04
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
+ C V + W + + S +L D + N C A
Sbjct: 19 DVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLA-NVTSDLNRKNVTCWAE 77
Query: 70 NNLGSSQQFIQLS 82
N++G ++ +Q++
Sbjct: 78 NDVGRAEVSVQVN 90
>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 34.1 bits (77), Expect = 9e-04
Identities = 7/66 (10%), Positives = 22/66 (33%), Gaps = 2/66 (3%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
E++ E + +++ + SL + ++ +D Y ++ N
Sbjct: 24 KEVLW--KKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN 81
Query: 71 NLGSSQ 76
+ +
Sbjct: 82 ITDTMK 87
>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27
[TaxId: 9606]}
Length = 89
Score = 34.0 bits (77), Expect = 0.001
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
A + + P +W G +T ++ +KH L++ + + G QA+
Sbjct: 18 TAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAA 76
Query: 70 NNLGSSQQFIQ 80
N ++ ++
Sbjct: 77 NAKSAANLKVK 87
>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 34.2 bits (77), Expect = 0.001
Identities = 8/46 (17%), Positives = 13/46 (28%)
Query: 37 GGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 82
+ H + + KD GNY C+ + L
Sbjct: 56 KETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 101
>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 32.7 bits (73), Expect = 0.003
Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Query: 11 AEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASN 70
AE+ C+ +N F++G + + +LL+ ++ + D G Y C +
Sbjct: 15 AELKCSQKSNLARVFWKFQNGVLKA---ESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEE 71
Query: 71 NLGSSQQFIQLS 82
+ + F ++
Sbjct: 72 RVKNKTVFQVVA 83
>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 115
Score = 32.8 bits (73), Expect = 0.004
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 8/81 (9%)
Query: 10 RAEIICNVYANPPAKVEWF-------RDGTAITLGGRIDMHVSSEKHSLLVRHI-KDTDF 61
+ +I C + + PP + GT+ +L + +I +
Sbjct: 23 KGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQ 82
Query: 62 GNYMCQASNNLGSSQQFIQLS 82
Y C A N+ GS + I+L
Sbjct: 83 TIYNCTAWNSFGSDTEIIRLK 103
>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM,
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 102
Score = 32.0 bits (71), Expect = 0.006
Identities = 7/45 (15%), Positives = 13/45 (28%)
Query: 38 GRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 82
V+ + + D G Y C S G + + +
Sbjct: 54 APYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIH 98
>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1
(VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 31.5 bits (70), Expect = 0.011
Identities = 10/75 (13%), Positives = 21/75 (28%), Gaps = 7/75 (9%)
Query: 7 PDMRAEIICNVY-ANPPAKVE--WFRDGTAI---TLGGRIDMHVSSEKHSLLVRHIKDTD 60
+ C+V P ++E + + D K + D
Sbjct: 15 AGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIED 74
Query: 61 FG-NYMCQASNNLGS 74
G +C+A ++
Sbjct: 75 IGKVLVCRAKLHIDE 89
>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 30.7 bits (68), Expect = 0.018
Identities = 6/42 (14%), Positives = 17/42 (40%)
Query: 43 HVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI 84
+ S+++ ++ +D G Y C + + L+ +
Sbjct: 59 FDITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEV 100
>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car),
domain 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 30.7 bits (68), Expect = 0.023
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 27 WFRDGTAITLGGRIDMH---VSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 82
D L GR+ + S S+ V +++ +D G Y C+ G + + I L
Sbjct: 63 KIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLV 121
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha
subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 29.6 bits (65), Expect = 0.033
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 8/56 (14%)
Query: 21 PPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 76
KV +++DG A + E H++ + + D G Y C +
Sbjct: 29 DVYKVIYYKDGEA--------LKYWYENHNISITNATVEDSGTYYCTGKVWQLDYE 76
>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor
tyro3, second domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 85
Score = 29.6 bits (65), Expect = 0.033
Identities = 11/62 (17%), Positives = 18/62 (29%), Gaps = 9/62 (14%)
Query: 14 ICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLG 73
V P + W+R T I ++ T + C+A N G
Sbjct: 23 CEAVGPPEPVTIVWWRGTTKIG---------GPAPSPSVLNVTGVTQSTMFSCEAHNLKG 73
Query: 74 SS 75
+
Sbjct: 74 LA 75
>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 110
Score = 29.8 bits (66), Expect = 0.033
Identities = 7/46 (15%), Positives = 15/46 (32%)
Query: 39 RIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGI 84
S+ +L + +++ D G Y C + + I
Sbjct: 59 MGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNS 104
>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 98
Score = 29.7 bits (66), Expect = 0.041
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 50 SLLVRHIKDTDFGNYMCQASNNLGSS 75
L ++++ D G Y + G+
Sbjct: 61 DLKIKNLTRDDSGTYNVTVYSTNGTR 86
>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 29.1 bits (65), Expect = 0.045
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 10/65 (15%)
Query: 13 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 72
+ C+ + WF+DG I +K L + KD G Y C+ S N
Sbjct: 22 LTCDA---EAKNITWFKDGK------MIGFLTEDKKKWNLGSNAKDPR-GMYQCKGSQNK 71
Query: 73 GSSQQ 77
Q
Sbjct: 72 SKPLQ 76
>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 29.6 bits (65), Expect = 0.046
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 7/81 (8%)
Query: 2 HSITAPDMRAEIICNVYANP-PAKVEWFRDGTAITLGGRIDMHVSSEK--HSLLVRHIKD 58
HSI A D E+ C V V W + + E+ S + H +
Sbjct: 13 HSILAGD-PFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEP 71
Query: 59 T---DFGNYMCQASNNLGSSQ 76
D G+Y C A+ +
Sbjct: 72 VLPNDNGSYRCSANFQSNLIE 92
>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32)
{Human (Homo sapiens), IIb [TaxId: 9606]}
Length = 88
Score = 28.7 bits (63), Expect = 0.079
Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 9/65 (13%)
Query: 11 AEIICNVYANPPA-KVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
+ C+ + + P KV +F++ S + + + G+Y C +
Sbjct: 18 IVLRCHSWKDKPLVKVTFFQN--------GKSKKFSRSDPNFSIPQANHSHSGDYHCTGN 69
Query: 70 NNLGS 74
Sbjct: 70 IGYTL 74
>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 86
Score = 28.3 bits (63), Expect = 0.083
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 13 IICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNL 72
+ C + ++W +DG+ I+ +++ L + KD G Y CQ +
Sbjct: 27 LTCGL---TDKTIKWLKDGSIISPLN------ATKNTWNLGNNAKDPR-GTYQCQGAKET 76
Query: 73 GSSQQ 77
+ Q
Sbjct: 77 SNPLQ 81
>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,
CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 96
Score = 28.1 bits (61), Expect = 0.15
Identities = 14/76 (18%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 1 MHSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTD 60
+ + T ++ + + + + A ++W + ++ L R+ + L + IK D
Sbjct: 10 VTNTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLS--QNNSILRIDPIKRED 67
Query: 61 FGNYMCQASNNLGSSQ 76
G Y C+ SN + +
Sbjct: 68 AGEYQCEISNPVSVRR 83
>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 111
Score = 27.7 bits (60), Expect = 0.21
Identities = 10/87 (11%), Positives = 18/87 (20%), Gaps = 6/87 (6%)
Query: 8 DMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDT------DF 61
+ + + P R A D + D
Sbjct: 19 PFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDI 78
Query: 62 GNYMCQASNNLGSSQQFIQLSGIPNIP 88
Y+C A N + + I +
Sbjct: 79 YKYVCTAKNAAVDEEVVLVEYEIKGVT 105
>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 27.4 bits (59), Expect = 0.25
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 41 DMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLS 82
+ V+ + + + D G Y C S G+S +++
Sbjct: 60 EDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVK 101
>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a,
CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 107
Score = 27.4 bits (60), Expect = 0.30
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 50 SLLVRHIKDTDFGNYMCQASN-NLGSSQQFIQL 81
SLL + I D G Y ++ N +Q ++
Sbjct: 72 SLLFQMITMKDMGVYTLDMTDENYRRTQATVRF 104
>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion
molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 90
Score = 26.6 bits (57), Expect = 0.51
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 19 ANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQF 78
A+ A V+W T + + + L VR+ + G +C S + Q
Sbjct: 30 ADRGASVQWRGLDT-----SLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHT 84
Query: 79 IQL 81
+QL
Sbjct: 85 VQL 87
>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human
(Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 26.0 bits (57), Expect = 0.61
Identities = 10/57 (17%), Positives = 17/57 (29%), Gaps = 9/57 (15%)
Query: 25 VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQL 81
+ W L S L + I D G Y C ++ + +Q+
Sbjct: 20 ITWVEGTVGTLL--------SDITRLDLGKRILDPR-GIYRCNGTDIYKDKESTVQV 67
>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32)
{Human (Homo sapiens), III [TaxId: 9606]}
Length = 84
Score = 26.0 bits (56), Expect = 0.63
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 33 AITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
T + +SS+ S + D G Y CQ + + S
Sbjct: 36 NSTQWFHNESLISSQASSYFIDAATVNDSGEYRCQTNLSTLS 77
>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal
domain {Human (Homo sapiens), HLA-DQ group [TaxId:
9606]}
Length = 97
Score = 26.1 bits (57), Expect = 0.77
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 9/62 (14%)
Query: 13 IICNV--YANPPAKVEWFRDGTAITLGG-----RIDMHVSSEKHSLLVRHIKDTDFGNYM 65
++C+V + KV WFR+ T G + + + +L + D Y
Sbjct: 21 LVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGD--VYT 78
Query: 66 CQ 67
C
Sbjct: 79 CH 80
>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 25.8 bits (55), Expect = 0.79
Identities = 9/33 (27%), Positives = 11/33 (33%)
Query: 42 MHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGS 74
SL + + K D G Y CQ S
Sbjct: 41 SLSEETNSSLNIVNAKFEDSGEYKCQHQQVNES 73
>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1
(VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 25.9 bits (55), Expect = 0.96
Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
+ C+ W + G + +S +L + + + +Y+C A+
Sbjct: 18 SVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTS---TLTMNPVSFGNEHSYLCTAT 74
Query: 70 NNLGSSQQFIQLS 82
++ IQ+
Sbjct: 75 CESRKLEKGIQVE 87
>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 97
Score = 25.5 bits (55), Expect = 1.2
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 45 SSEKHSLLVRHIKDTDFGNYMCQASNN 71
L+++++K D Y+C+ +
Sbjct: 63 DQGNFPLIIKNLKIEDSDTYICEVEDQ 89
>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 84
Score = 25.0 bits (53), Expect = 1.8
Identities = 8/73 (10%), Positives = 16/73 (21%), Gaps = 10/73 (13%)
Query: 10 RAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQAS 69
+ V+ +L V ++ D G + C
Sbjct: 16 SLTLTLESPPGSSPSVQCRSP----------RGKNIQGGKTLSVSQLELQDSGTWTCTVL 65
Query: 70 NNLGSSQQFIQLS 82
N + I +
Sbjct: 66 QNQKKVEFKIDIV 78
>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 119
Score = 25.3 bits (54), Expect = 2.0
Identities = 10/82 (12%), Positives = 25/82 (30%), Gaps = 6/82 (7%)
Query: 1 MHSITAPDMRAEIICNVYANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTD 60
D + +V F++ S + S+++ ++ +D
Sbjct: 39 YQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVG------DPSWKDGSIVIHNLDYSD 92
Query: 61 FGNYMCQASNNLGSSQQFIQLS 82
G + C N + Q++
Sbjct: 93 NGTFTCDVKNPPDIVGKTSQVT 114
>d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia
coli [TaxId: 562]}
Length = 106
Score = 24.7 bits (54), Expect = 2.5
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 23 AKVEWFRDGTAITLGGRIDMHVSSEKH 49
+ RD T +TL G I +S + +
Sbjct: 28 ESAKSLRDDTWVTLRGNIVERISDDLY 54
>d1phoa_ f.4.3.1 (A:) Porin {Escherichia coli, different sequences
[TaxId: 562]}
Length = 330
Score = 25.3 bits (54), Expect = 3.0
Identities = 3/21 (14%), Positives = 9/21 (42%)
Query: 30 DGTAITLGGRIDMHVSSEKHS 50
DG + + G++ ++
Sbjct: 7 DGNKLDVYGKVKAMHYMSDNA 27
>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal
domain {Human (Homo sapiens), HLA-DR group [TaxId:
9606]}
Length = 98
Score = 24.2 bits (52), Expect = 3.3
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 10 RAEIICNV--YANPPAKVEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFG---NY 64
++C+V + +V WFR+G G + + + + +T Y
Sbjct: 20 HNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVY 79
Query: 65 MCQ 67
CQ
Sbjct: 80 TCQ 82
>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 89
Score = 23.7 bits (51), Expect = 4.1
Identities = 4/35 (11%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 5 TAPDMRAEIICNV--YANPPAKVEWFRDGTAITLG 37
+ P+ + + C + + W +G +
Sbjct: 12 SRPEDKVTLRCWALGFYPADITLTWQLNGEELIQD 46
>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda
constant domain, CL-lambda {Human (Homo sapiens) [TaxId:
9606]}
Length = 102
Score = 23.9 bits (51), Expect = 4.1
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Query: 10 RAEIICNVYANPPA--KVEWFRDGTAITLGGRIDMHVSSE-----KHSLLVRHIKDTDFG 62
+A ++C + P V+W DGT +T G S L + +
Sbjct: 22 KATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERH 81
Query: 63 N-YMCQASNNLGSSQQFIQLS 82
+ Y CQ ++ SS + + +
Sbjct: 82 SSYSCQVTHEGHSSNKTLSRA 102
>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa
constant domain, CL-kappa {Mouse (Mus musculus) [TaxId:
10090]}
Length = 107
Score = 23.9 bits (51), Expect = 4.9
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 9/69 (13%)
Query: 10 RAEIICNV--YANPPAKVEWFRDGTAITLGGRIDMHVSSEK------HSLLVRHIKDTDF 61
A ++C + + V+W DG+ G K S L + +
Sbjct: 22 GASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYER 81
Query: 62 GN-YMCQAS 69
N Y C+A+
Sbjct: 82 HNSYTCEAT 90
>d1h4xa_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa
{Bacillus sphaericus [TaxId: 1421]}
Length = 111
Score = 23.8 bits (51), Expect = 5.3
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 8/78 (10%)
Query: 29 RDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQQFIQLSGIPNIP 88
R+ I L G +D H + + + I + F+ SG +
Sbjct: 9 RETVVIRLFGELDHHAVEQIRAKISTAIFQGAVTTIIWNFERL-----SFMDSSG---VG 60
Query: 89 VFQKSSRRLGPDGYRLVW 106
+ R L R +
Sbjct: 61 LVLGRMRELEAVAGRTIL 78
>d1cnt1_ a.26.1.1 (1:) Ciliary neurotrophic factor (CNTF) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 24.0 bits (52), Expect = 6.3
Identities = 7/42 (16%), Positives = 12/42 (28%)
Query: 84 IPNIPVFQKSSRRLGPDGYRLVWQVDTYSAIIQYLLKFRERE 125
+PV + RL + Y L + E +
Sbjct: 43 ADGMPVASTDQWSELTEAERLQENLQAYRTFHVLLARLLEDQ 84
>d2zfga1 f.4.3.1 (A:1-340) Porin {Escherichia coli, different
sequences [TaxId: 562]}
Length = 340
Score = 24.1 bits (51), Expect = 6.3
Identities = 4/12 (33%), Positives = 6/12 (50%)
Query: 30 DGTAITLGGRID 41
DG + L G+
Sbjct: 7 DGNKVDLYGKAV 18
>d1osma_ f.4.3.1 (A:) Porin {Klebsiella pneumoniae [TaxId: 573]}
Length = 342
Score = 24.1 bits (51), Expect = 6.5
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 30 DGTAITLGGRID 41
DG + L G+ID
Sbjct: 7 DGNKLDLYGKID 18
>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 97
Score = 23.5 bits (49), Expect = 7.1
Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 4/72 (5%)
Query: 10 RAEIICNV---YANPPAKVEWFRDGTAITLGGRIDMHVSSEK-HSLLVRHIKDTDFGNYM 65
+C V + RI + + + +L + + D G Y
Sbjct: 17 SKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYK 76
Query: 66 CQASNNLGSSQQ 77
C + G+ +
Sbjct: 77 CVVTAEDGTQSE 88
>d2vbaa2 c.95.1.1 (A:254-404) Beta-ketoacyl-ACP synthase I
{Escherichia coli [TaxId: 562]}
Length = 151
Score = 23.6 bits (50), Expect = 7.6
Identities = 7/45 (15%), Positives = 13/45 (28%), Gaps = 3/45 (6%)
Query: 2 HSITAPDMRAEIICNVYANPPAKVEWFR---DGTAITLGGRIDMH 43
+ AP + C A GT+ +G ++
Sbjct: 14 ADMVAPSGEGAVRCMKMAMHGVDTPIDYLNSHGTSTPVGDVKELA 58
>d1xmwa2 b.1.1.4 (A:113-178) CD3 epsilon chain ectodomain fragment
{Sheep (Ovis aries) [TaxId: 9940]}
Length = 66
Score = 22.8 bits (49), Expect = 7.7
Identities = 8/52 (15%), Positives = 15/52 (28%), Gaps = 9/52 (17%)
Query: 25 VEWFRDGTAITLGGRIDMHVSSEKHSLLVRHIKDTDFGNYMCQASNNLGSSQ 76
+ + + K L + I+D G Y C + + Q
Sbjct: 19 ITLLQGTAGQEVSD--------NKTLNLGKRIEDPR-GMYQCGENAKSFTLQ 61
>d1twua_ d.32.1.8 (A:) Hypothetical protein YycE {Bacillus subtilis
[TaxId: 1423]}
Length = 137
Score = 23.3 bits (49), Expect = 8.4
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 99 PDGYRLVWQ 107
PDG+R+V+
Sbjct: 121 PDGWRIVFM 129
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.418
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 477,594
Number of extensions: 19766
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 84
Length of query: 126
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 51
Effective length of database: 1,377,846
Effective search space: 70270146
Effective search space used: 70270146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.8 bits)