BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12134
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY-PPEVSVEKQWIHT 66
+++L + +L L VT G Y+C N + S I+NV+Y P + ++ + +
Sbjct: 334 RLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYY 393
Query: 67 APDMRAEIICNVYANPPAK 85
P + + C+ +NPPA+
Sbjct: 394 RPGVNLSLSCHAASNPPAQ 412
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV-SVEKQWIHT 66
+++L +L L VT Y+C N + S + I+NV+Y P+ ++
Sbjct: 156 RLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSY 215
Query: 67 APDMRAEIICNVYANPPAKR--FDEGTRFDEGT 97
+ C+ +NPPA+ F GT F + T
Sbjct: 216 RSGENLNLSCHAASNPPAQYSWFVNGT-FQQST 247
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 32.3 bits (72), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSK-NFIV 49
+L L+ V + AG+Y C+ASN++G T+ NF V
Sbjct: 246 ALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 32.3 bits (72), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSK-NFIV 49
+L L+ V + AG+Y C+ASN++G T+ NF V
Sbjct: 246 ALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV 49
E L L VT + AG Y C+A N+IG S ++V
Sbjct: 291 EVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV 324
>pdb|4DKD|C Chain C, Crystal Structure Of Human Interleukin-34 Bound To Human
Csf-1r
Length = 292
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFI 48
+L+LD+V + AG Y C+ASN G+ ++ F
Sbjct: 246 TLNLDQVDFQHAGNYSCVASNVQGKHSTSMFF 277
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 62
AG+YQC+ASN +G S+ I+ + E S E++
Sbjct: 73 AGVYQCLASNPVGTVVSREAILRFGFLQEFSKEER 107
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSK 45
+L+ VT++ G+Y C+ SN++G +T+
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTAS 426
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 16 ESLDLDRVTLKLAGLYQCIASNNIGEST 43
SL ++ VT + AG+Y CIA+N G+++
Sbjct: 66 HSLIIEPVTSRDAGIYTCIATNRAGQNS 93
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV 49
E L L V+ + AG Y C+A N+IG S ++
Sbjct: 185 EVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLT 218
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV 49
E L L V+ + AG Y C+A N+IG S ++
Sbjct: 184 EVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLT 217
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV 49
E L L V+ + AG Y C+A N+IG S ++
Sbjct: 184 EVLHLRNVSFEDAGEYTCLAGNSIGLSHHSAWLT 217
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEII 75
++L + V+ + +G Y C+ASN +G S V V P E + + AP ++
Sbjct: 275 KALRITNVSEEDSGEYFCLASNKMG-SIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLV 333
Query: 76 CNVYANP 82
C NP
Sbjct: 334 CRANGNP 340
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES 42
+IE+LY R VT + AG Y C+A N+IG S
Sbjct: 177 EIEVLYIR------NVTFEDAGEYTCLAGNSIGIS 205
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 1 MLVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE 60
++ +F ++ + N + L + V G+Y C A+N +G + + V P+++
Sbjct: 47 LIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRP 106
Query: 61 KQWIHTAPDMRAEIICNVYANP-PAKRFDEGTRFDEGTVTAKVLQPFSERTLSVQDK 116
+ ++A + C NP P+ + +G VL+ S R +VQ +
Sbjct: 107 PINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKE 163
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSK 45
SL + V + AG Y+C+A N++G + SK
Sbjct: 154 SLRIHNVQKEDAGQYRCVAKNSLGTAYSK 182
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIG 40
+L++ V L AG+YQC+A N G
Sbjct: 347 TLNITIVNLSDAGMYQCVAENKHG 370
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVIY 53
AG YQCIA+N+ G S+ + Y
Sbjct: 74 AGTYQCIATNSFGTIVSREAKLQFAY 99
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES 42
+IE+LY R VT + AG Y C+A N+IG S
Sbjct: 176 EIEVLYIRN------VTFEDAGEYTCLAGNSIGIS 204
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIG 40
+L++ V L AG+YQC+A N G
Sbjct: 348 TLNITIVNLSDAGMYQCVAENKHG 371
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVIY 53
AG YQCIA+N+ G S+ + Y
Sbjct: 75 AGTYQCIATNSFGTIVSREAKLQFAY 100
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES 42
+IE+LY R VT + AG Y C+A N+IG S
Sbjct: 177 EIEVLYIRN------VTFEDAGEYTCLAGNSIGIS 205
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES 42
+IE+LY R VT + AG Y C+A N+IG S
Sbjct: 177 EIEVLYIRN------VTFEDAGEYTCLAGNSIGIS 205
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES 42
+IE+LY R VT + AG Y C+A N+IG S
Sbjct: 177 EIEVLYIRN------VTFEDAGEYTCLAGNSIGIS 205
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGES 42
+IE+LY R VT + AG Y C+A N+IG S
Sbjct: 175 EIEVLYIRN------VTFEDAGEYTCLAGNSIGIS 203
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 23 VTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 62
V K AG YQC+A+N G S+ + + E S E++
Sbjct: 69 VKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEER 108
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGEST 43
K+ L+ N +L + +VT AG Y C ASN G+ +
Sbjct: 53 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDS 88
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGEST 43
K+ L+ N +L + +VT AG Y C ASN G+ +
Sbjct: 245 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDS 280
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGEST 43
K+ L+ N +L + +VT AG Y C ASN G+ +
Sbjct: 53 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDS 88
>pdb|1L9Y|A Chain A, Fez-1-Y228a, A Mutant Of The Metallo-Beta-Lactamase From
Legionella Gormanii
pdb|1L9Y|B Chain B, Fez-1-Y228a, A Mutant Of The Metallo-Beta-Lactamase From
Legionella Gormanii
Length = 263
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 31 YQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDEG 90
YQ + +IG + + N+ YP K I MR C+++ A FD
Sbjct: 167 YQAVIIGSIGVNPGAKLVDNITYPKIAEDYKHSIKVLESMR----CDIFLGSHAGMFDLK 222
Query: 91 TRF 93
++
Sbjct: 223 NKY 225
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Human Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 26.9 bits (58), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 8/12 (66%), Positives = 12/12 (100%)
Query: 30 LYQCIASNNIGE 41
+Y+C+ASNN+GE
Sbjct: 78 IYECVASNNVGE 89
>pdb|1JT1|A Chain A, Fez-1 Metallo-Beta-Lactamase From Legionella Gormanii
Modelled With D- Captopril
pdb|1K07|A Chain A, Native Fez-1 Metallo-beta-lactamase From Legionella
Gormanii
pdb|1K07|B Chain B, Native Fez-1 Metallo-beta-lactamase From Legionella
Gormanii
Length = 263
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 31 YQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDEG 90
YQ + +IG + + N+ YP K I MR C+++ A FD
Sbjct: 167 YQAVIIGSIGVNPGYKLVDNITYPKIAEDYKHSIKVLESMR----CDIFLGSHAGMFDLK 222
Query: 91 TRF 93
++
Sbjct: 223 NKY 225
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANP----P 83
G Y C A+N GE + F+ + P + ++ + T + + ++C+ P
Sbjct: 70 GGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNE--TTYENGQVTLVCDAEGEPIPEIT 127
Query: 84 AKRFDEGTRFDEG 96
KR +G F EG
Sbjct: 128 WKRAVDGFTFTEG 140
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 16 ESLDLDRVTLKLAGLYQCIASNNIGEST 43
SL + V AG Y C+A N GE+T
Sbjct: 62 HSLIFEVVRASDAGAYACVAKNRAGEAT 89
>pdb|4DKT|A Chain A, Crystal Structure Of Human Peptidylarginine Deiminase 4 In
Complex With
N-Acetyl-L-Threonyl-L-Alpha-Aspartyl-N5-[(1e)-2-
Fluoroethanimidoyl]-L-Ornithinamide
Length = 668
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 74 IICNVYANPPAKRFDEGTRFDEGTVTAKVLQPFSERTLSVQDKIGPGPDSNLRPSAYMAD 133
++ ++ +PPAK+ G+ + L P E TL+++ G D ++ S Y
Sbjct: 53 VVVDIAHSPPAKKKSTGS-------STWPLDPGVEVTLTMKAASGSTGDQKVQISYYGPK 105
Query: 134 APPTK 138
PP K
Sbjct: 106 TPPVK 110
>pdb|3APN|A Chain A, Crystal Structure Of The Human Wild-Type Pad4 Protein
Length = 666
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 74 IICNVYANPPAKRFDEGTRFDEGTVTAKVLQPFSERTLSVQDKIGPGPDSNLRPSAYMAD 133
++ ++ +PPAK+ G+ + L P E TL+++ G D ++ S Y
Sbjct: 51 VVVDIAHSPPAKKKSTGS-------STWPLDPGVEVTLTMKAASGSTGDQKVQISYYGPK 103
Query: 134 APPTK 138
PP K
Sbjct: 104 TPPVK 108
>pdb|2DEW|X Chain X, Crystal Structure Of Human Peptidylarginine Deiminase 4 In
Complex With Histone H3 N-Terminal Tail Including Arg8
pdb|2DEX|X Chain X, Crystal Structure Of Human Peptidylarginine Deiminase 4 In
Complex With Histone H3 N-Terminal Peptide Including
Arg17
pdb|2DEY|X Chain X, Crystal Structure Of Human Peptidylarginine Deiminase 4 In
Complex With Histone H4 N-Terminal Tail Including Arg3
Length = 671
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 74 IICNVYANPPAKRFDEGTRFDEGTVTAKVLQPFSERTLSVQDKIGPGPDSNLRPSAYMAD 133
++ ++ +PPAK+ G+ + L P E TL+++ G D ++ S Y
Sbjct: 56 VVVDIAHSPPAKKKSTGS-------STWPLDPGVEVTLTMKAASGSTGDQKVQISYYGPK 108
Query: 134 APPTK 138
PP K
Sbjct: 109 TPPVK 113
>pdb|1WD9|A Chain A, Calcium Bound Form Of Human Peptidylarginine Deiminase
Type4 (pad4)
pdb|1WDA|A Chain A, Crystal Structure Of Human Peptidylarginine Deiminase
Type4 (Pad4) In Complex With Benzoyl-L-Arginine Amide
Length = 670
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 74 IICNVYANPPAKRFDEGTRFDEGTVTAKVLQPFSERTLSVQDKIGPGPDSNLRPSAYMAD 133
++ ++ +PPAK+ G+ + L P E TL+++ G D ++ S Y
Sbjct: 55 VVVDIAHSPPAKKKSTGS-------STWPLDPGVEVTLTMKAASGSTGDQKVQISYYGPK 107
Query: 134 APPTK 138
PP K
Sbjct: 108 TPPVK 112
>pdb|2DW5|A Chain A, Crystal Structure Of Human Peptidylarginine Deiminase 4 In
Complex With
N-Alpha-Benzoyl-N5-(2-Fluoro-1-Iminoethyl)-L-Ornithine
Amide
pdb|3B1T|A Chain A, Crystal Structure Of Human Peptidylarginine Deiminase 4 In
Complex With O-Cl-Amidine
pdb|3B1U|A Chain A, Crystal Structure Of Human Peptidylarginine Deiminase 4 In
Complex With O-F-Amidine
Length = 671
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 74 IICNVYANPPAKRFDEGTRFDEGTVTAKVLQPFSERTLSVQDKIGPGPDSNLRPSAYMAD 133
++ ++ +PPAK+ G+ + L P E TL+++ G D ++ S Y
Sbjct: 56 VVVDIAHSPPAKKKSTGS-------STWPLDPGVEVTLTMKAASGSTGDQKVQISYYGPK 108
Query: 134 APPTK 138
PP K
Sbjct: 109 TPPVK 113
>pdb|1WD8|A Chain A, Calcium Free Form Of Human Peptidylarginine Deiminase
Type4 (Pad4)
Length = 670
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 74 IICNVYANPPAKRFDEGTRFDEGTVTAKVLQPFSERTLSVQDKIGPGPDSNLRPSAYMAD 133
++ ++ +PPAK+ G+ + L P E TL+++ G D ++ S Y
Sbjct: 55 VVVDIAHSPPAKKKSTGS-------STWPLDPGVEVTLTMKAASGSTGDQKVQISYYGPK 107
Query: 134 APPTK 138
PP K
Sbjct: 108 TPPVK 112
>pdb|4FOM|A Chain A, Crystal Structure Of Human Nectin-3 Full Ectodomain
(D1-D3)
Length = 308
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 46 NFIVNVIYPPEVSV---EKQWIHTAPDMRAEIICNVYANPP 83
+FI+++ Y PEVSV + W + CN ANPP
Sbjct: 203 SFILDIQYAPEVSVTGYDGNWF--VGRKGVNLKCNADANPP 241
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,225,999
Number of Sequences: 62578
Number of extensions: 157701
Number of successful extensions: 421
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 378
Number of HSP's gapped (non-prelim): 56
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)