Query psy12134
Match_columns 139
No_of_seqs 105 out of 1305
Neff 10.6
Searched_HMMs 46136
Date Fri Aug 16 19:35:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12134.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12134hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.7 6.9E-17 1.5E-21 123.4 13.1 121 2-123 273-415 (1051)
2 KOG3513|consensus 99.7 1.4E-15 3.1E-20 116.3 11.6 121 1-122 362-507 (1051)
3 PHA02826 IL-1 receptor-like pr 99.6 9.2E-14 2E-18 92.4 12.7 94 15-115 97-207 (227)
4 PHA02785 IL-beta-binding prote 99.6 1.1E-13 2.4E-18 96.8 13.7 115 2-118 158-316 (326)
5 KOG4222|consensus 99.6 5.1E-15 1.1E-19 113.3 6.8 122 2-123 164-307 (1281)
6 KOG4194|consensus 99.5 5.6E-14 1.2E-18 102.5 9.9 107 16-122 574-697 (873)
7 KOG4221|consensus 99.5 7.4E-14 1.6E-18 107.6 8.8 121 2-123 269-410 (1381)
8 PHA02785 IL-beta-binding prote 99.5 5.3E-13 1.2E-17 93.4 12.3 119 2-121 63-204 (326)
9 KOG4194|consensus 99.5 2.8E-13 6.1E-18 98.9 9.5 117 2-119 644-786 (873)
10 cd05853 Ig6_Contactin-4 Sixth 99.4 1.1E-12 2.4E-17 74.3 6.5 53 2-55 19-85 (85)
11 KOG4221|consensus 99.4 1.4E-11 3E-16 95.5 13.5 114 2-115 172-312 (1381)
12 cd05771 IgC_Tapasin_R Tapasin- 99.4 3.9E-11 8.5E-16 74.3 11.8 71 17-88 2-74 (139)
13 cd05863 Ig2_VEGFR-3 Second imm 99.3 1.3E-11 2.8E-16 66.9 6.9 49 2-51 15-65 (67)
14 cd05854 Ig6_Contactin-2 Sixth 99.3 1.5E-11 3.3E-16 69.9 7.1 53 2-55 19-85 (85)
15 KOG4222|consensus 99.3 1E-11 2.2E-16 95.7 7.6 131 2-133 257-416 (1281)
16 cd05762 Ig8_MLCK Eighth immuno 99.3 3.3E-11 7.1E-16 70.3 7.6 54 1-55 31-94 (98)
17 cd04970 Ig6_Contactin_like Six 99.3 3.1E-11 6.7E-16 68.6 7.2 53 2-55 19-85 (85)
18 cd05892 Ig_Myotilin_C C-termin 99.2 9.1E-11 2E-15 65.1 6.5 49 2-51 15-75 (75)
19 cd05864 Ig2_VEGFR-2 Second imm 99.2 8E-11 1.7E-15 64.4 6.1 48 2-50 15-67 (70)
20 cd05859 Ig4_PDGFR-alpha Fourth 99.2 7.6E-11 1.6E-15 69.1 6.4 51 1-52 34-100 (101)
21 cd05852 Ig5_Contactin-1 Fifth 99.2 1.3E-10 2.8E-15 64.2 6.6 49 2-51 18-73 (73)
22 cd04971 Ig_TrKABC_d5 Fifth dom 99.2 1.2E-10 2.6E-15 65.6 6.5 48 1-49 14-78 (81)
23 cd04976 Ig2_VEGFR Second immun 99.2 1.3E-10 2.9E-15 63.7 6.6 49 2-51 15-69 (71)
24 cd05745 Ig3_Peroxidasin Third 99.2 1E-10 2.2E-15 64.7 6.2 49 2-51 19-74 (74)
25 cd05740 Ig_CEACAM_D4 Fourth im 99.2 1.6E-10 3.6E-15 66.5 7.0 50 2-51 34-90 (91)
26 cd05893 Ig_Palladin_C C-termin 99.2 1.2E-10 2.6E-15 64.6 6.2 49 2-51 15-75 (75)
27 cd05748 Ig_Titin_like Immunogl 99.2 1.8E-10 3.9E-15 63.7 6.9 49 2-51 16-74 (74)
28 cd05735 Ig8_DSCAM Eight immuno 99.2 1.8E-10 3.9E-15 65.9 6.9 53 2-55 18-85 (88)
29 cd05738 Ig2_RPTP_IIa_LAR_like 99.2 2.4E-10 5.1E-15 63.3 6.9 50 2-51 15-73 (74)
30 cd05855 Ig_TrkB_d5 Fifth domai 99.2 2.2E-10 4.7E-15 64.0 6.7 48 1-49 14-76 (79)
31 cd05867 Ig4_L1-CAM_like Fourth 99.1 3.6E-10 7.7E-15 62.8 7.1 49 2-51 18-75 (76)
32 cd05723 Ig4_Neogenin Fourth im 99.1 2.8E-10 6.1E-15 62.4 6.5 49 2-51 16-71 (71)
33 cd05876 Ig3_L1-CAM Third immun 99.1 2.7E-10 5.8E-15 62.5 6.0 49 2-51 15-70 (71)
34 cd05744 Ig_Myotilin_C_like Imm 99.1 3.8E-10 8.3E-15 62.6 6.6 49 2-51 15-75 (75)
35 cd05725 Ig3_Robo Third immunog 99.1 3.1E-10 6.7E-15 61.9 6.1 49 2-51 15-69 (69)
36 cd05851 Ig3_Contactin-1 Third 99.1 3.8E-10 8.1E-15 64.5 6.6 69 54-122 1-81 (88)
37 cd04975 Ig4_SCFR_like Fourth i 99.1 3E-10 6.5E-15 66.5 6.3 50 2-52 36-100 (101)
38 cd04969 Ig5_Contactin_like Fif 99.1 4E-10 8.8E-15 62.1 6.5 49 2-51 18-73 (73)
39 cd05894 Ig_C5_MyBP-C C5 immuno 99.1 4.2E-10 9.2E-15 64.1 6.7 49 2-51 27-86 (86)
40 cd05746 Ig4_Peroxidasin Fourth 99.1 4.5E-10 9.9E-15 61.2 6.5 47 2-49 15-68 (69)
41 cd05762 Ig8_MLCK Eighth immuno 99.1 1.2E-09 2.6E-14 63.7 8.1 78 55-135 1-94 (98)
42 cd05868 Ig4_NrCAM Fourth immun 99.1 8.5E-10 1.8E-14 61.3 7.1 50 2-52 18-76 (76)
43 cd05760 Ig2_PTK7 Second immuno 99.1 8.1E-10 1.8E-14 61.6 6.8 52 1-52 14-75 (77)
44 cd05763 Ig_1 Subgroup of the i 99.1 9.5E-10 2.1E-14 60.9 6.8 49 2-51 15-74 (75)
45 cd05851 Ig3_Contactin-1 Third 99.1 6.5E-10 1.4E-14 63.6 6.1 49 2-51 33-87 (88)
46 cd05731 Ig3_L1-CAM_like Third 99.1 7.6E-10 1.7E-14 60.5 6.1 49 2-51 15-70 (71)
47 cd04978 Ig4_L1-NrCAM_like Four 99.1 1.1E-09 2.4E-14 60.6 6.8 49 2-51 18-75 (76)
48 cd05730 Ig3_NCAM-1_like Third 99.1 1.6E-09 3.5E-14 62.7 7.5 50 2-52 35-93 (95)
49 cd05724 Ig2_Robo Second immuno 99.0 1E-09 2.3E-14 62.2 6.4 50 2-51 29-86 (86)
50 cd05857 Ig2_FGFR Second immuno 99.0 1.2E-09 2.5E-14 61.9 6.6 49 2-51 26-85 (85)
51 cd05737 Ig_Myomesin_like_C C-t 99.0 1.1E-09 2.4E-14 63.0 6.1 49 2-51 33-92 (92)
52 cd05773 Ig8_hNephrin_like Eigh 99.0 1.8E-09 3.9E-14 64.2 6.9 53 2-55 40-108 (109)
53 cd04968 Ig3_Contactin_like Thi 99.0 1.8E-09 3.8E-14 61.7 6.7 50 2-52 33-88 (88)
54 cd05728 Ig4_Contactin-2-like F 99.0 1.4E-09 3E-14 61.8 6.1 49 2-51 31-85 (85)
55 cd04973 Ig1_FGFR First immunog 99.0 1.1E-09 2.4E-14 61.3 5.5 48 2-50 25-78 (79)
56 cd05865 Ig1_NCAM-1 First immun 99.0 1.7E-09 3.8E-14 62.8 6.1 50 2-51 33-95 (96)
57 cd07702 Ig2_VEGFR-1 Second imm 99.0 1.6E-09 3.5E-14 59.5 5.6 38 2-39 15-59 (72)
58 cd05856 Ig2_FGFRL1-like Second 99.0 1.6E-09 3.4E-14 60.8 5.5 49 2-51 26-82 (82)
59 cd05895 Ig_Pro_neuregulin-1 Im 99.0 2E-09 4.3E-14 59.8 5.8 40 2-41 16-69 (76)
60 cd05752 Ig1_FcgammaR_like Frst 99.0 1.5E-09 3.2E-14 60.6 5.2 46 2-51 33-78 (78)
61 cd05757 Ig2_IL1R_like Second i 99.0 4.5E-09 9.8E-14 60.5 7.3 40 2-41 32-77 (92)
62 cd05747 Ig5_Titin_like M5, fif 99.0 4.5E-09 9.7E-14 60.5 7.1 69 54-122 3-87 (92)
63 cd05736 Ig2_Follistatin_like S 99.0 5.6E-09 1.2E-13 57.9 7.3 50 2-52 15-74 (76)
64 cd05756 Ig1_IL1R_like First im 99.0 2.5E-09 5.4E-14 61.9 5.9 49 2-51 36-94 (94)
65 cd05869 Ig5_NCAM-1 Fifth immun 99.0 3.2E-09 6.8E-14 61.8 6.3 49 2-51 34-97 (97)
66 cd04968 Ig3_Contactin_like Thi 99.0 5.2E-09 1.1E-13 59.7 7.1 68 55-122 2-81 (88)
67 cd05866 Ig1_NCAM-2 First immun 99.0 3.8E-09 8.2E-14 60.8 6.5 50 2-51 31-91 (92)
68 cd05726 Ig4_Robo Fhird immunog 99.0 5.2E-09 1.1E-13 60.0 6.9 51 2-53 18-83 (90)
69 cd05849 Ig1_Contactin-1 First 98.9 5.3E-09 1.1E-13 60.4 6.8 49 2-50 36-92 (93)
70 cd05850 Ig1_Contactin-2 First 98.9 6E-09 1.3E-13 60.3 7.1 49 2-50 36-93 (94)
71 cd05745 Ig3_Peroxidasin Third 98.9 3.2E-09 6.9E-14 58.7 5.6 55 68-122 1-68 (74)
72 cd05733 Ig6_L1-CAM_like Sixth 98.9 3.9E-09 8.4E-14 58.8 5.8 48 2-49 15-76 (77)
73 cd04972 Ig_TrkABC_d4 Fourth do 98.9 7.6E-09 1.6E-13 59.3 6.9 49 2-51 32-90 (90)
74 cd04977 Ig1_NCAM-1_like First 98.9 5.5E-09 1.2E-13 60.2 6.2 50 2-51 31-92 (92)
75 cd04974 Ig3_FGFR Third immunog 98.9 5.2E-09 1.1E-13 60.0 6.0 35 16-51 55-89 (90)
76 cd05848 Ig1_Contactin-5 First 98.9 7E-09 1.5E-13 60.0 6.6 48 2-49 36-92 (94)
77 PF07679 I-set: Immunoglobulin 98.9 6.7E-09 1.5E-13 59.3 6.4 49 2-51 32-90 (90)
78 cd05753 Ig2_FcgammaR_like Seco 98.9 4.1E-09 8.9E-14 59.6 5.3 50 2-51 32-83 (83)
79 cd05764 Ig_2 Subgroup of the i 98.9 8.9E-09 1.9E-13 56.8 6.4 49 2-51 18-74 (74)
80 cd05870 Ig5_NCAM-2 Fifth immun 98.9 2.1E-08 4.6E-13 58.4 8.3 68 54-122 2-92 (98)
81 cd05897 Ig2_IL1R2_like Second 98.9 7.9E-09 1.7E-13 59.7 6.1 40 2-41 32-80 (95)
82 cd05732 Ig5_NCAM-1_like Fifth 98.9 9.5E-09 2.1E-13 59.5 6.3 49 2-51 33-96 (96)
83 cd05874 Ig6_NrCAM Sixth immuno 98.9 1.1E-08 2.5E-13 56.9 6.3 48 2-49 15-76 (77)
84 cd05734 Ig7_DSCAM Seventh immu 98.9 1.6E-08 3.4E-13 56.5 7.0 37 15-51 43-79 (79)
85 cd05743 Ig_Perlecan_D2_like Im 98.9 6.1E-09 1.3E-13 58.1 5.2 41 2-42 18-68 (78)
86 cd05747 Ig5_Titin_like M5, fif 98.9 1.3E-08 2.8E-13 58.6 6.7 47 2-49 35-91 (92)
87 cd05858 Ig3_FGFR-2 Third immun 98.9 6.6E-09 1.4E-13 59.6 5.4 35 16-51 55-89 (90)
88 cd04972 Ig_TrkABC_d4 Fourth do 98.9 1.6E-08 3.4E-13 58.0 6.9 62 61-122 7-84 (90)
89 cd05891 Ig_M-protein_C C-termi 98.9 1.1E-08 2.3E-13 59.0 6.2 49 2-51 33-92 (92)
90 cd05773 Ig8_hNephrin_like Eigh 98.9 3.2E-08 7E-13 58.8 8.2 81 52-135 2-108 (109)
91 cd05765 Ig_3 Subgroup of the i 98.9 1.7E-08 3.6E-13 56.6 6.6 35 16-51 47-81 (81)
92 cd05875 Ig6_hNeurofascin_like 98.9 1.5E-08 3.3E-13 56.4 6.3 48 2-49 15-76 (77)
93 cd05852 Ig5_Contactin-1 Fifth 98.9 9.4E-09 2E-13 56.7 5.4 55 69-123 1-68 (73)
94 cd05750 Ig_Pro_neuregulin Immu 98.9 1.1E-08 2.4E-13 56.4 5.7 41 2-42 16-69 (75)
95 cd05722 Ig1_Neogenin First imm 98.8 1.7E-08 3.7E-13 58.4 6.5 50 2-51 31-95 (95)
96 cd05850 Ig1_Contactin-2 First 98.8 6.9E-08 1.5E-12 55.8 8.8 68 55-122 2-87 (94)
97 cd07693 Ig1_Robo First immunog 98.8 6E-08 1.3E-12 56.2 8.6 70 54-123 1-93 (100)
98 cd05869 Ig5_NCAM-1 Fifth immun 98.8 3.5E-08 7.5E-13 57.4 7.5 69 54-122 2-91 (97)
99 cd05870 Ig5_NCAM-2 Fifth immun 98.8 1.7E-08 3.8E-13 58.7 6.2 35 16-51 64-98 (98)
100 cd07693 Ig1_Robo First immunog 98.8 2.7E-08 6E-13 57.7 6.6 50 2-51 33-99 (100)
101 cd05848 Ig1_Contactin-5 First 98.8 7.3E-08 1.6E-12 55.7 8.1 68 55-122 2-87 (94)
102 cd05739 Ig3_RPTP_IIa_LAR_like 98.8 3.4E-08 7.3E-13 53.8 6.2 45 2-49 18-68 (69)
103 cd05730 Ig3_NCAM-1_like Third 98.8 2.2E-08 4.9E-13 57.9 5.9 58 64-121 13-85 (95)
104 cd05737 Ig_Myomesin_like_C C-t 98.8 6.1E-08 1.3E-12 55.8 7.6 62 61-122 8-86 (92)
105 cd05740 Ig_CEACAM_D4 Fourth im 98.8 3.3E-08 7.1E-13 56.8 6.3 61 61-122 10-83 (91)
106 cd05894 Ig_C5_MyBP-C C5 immuno 98.8 6.5E-08 1.4E-12 55.0 7.5 59 63-121 4-79 (86)
107 cd05728 Ig4_Contactin-2-like F 98.8 2.5E-08 5.4E-13 56.6 5.7 61 61-121 6-78 (85)
108 cd05849 Ig1_Contactin-1 First 98.8 5.1E-08 1.1E-12 56.3 6.9 70 55-124 2-88 (93)
109 cd05867 Ig4_L1-CAM_like Fourth 98.8 4.1E-08 9E-13 54.4 6.3 53 69-121 1-68 (76)
110 cd05863 Ig2_VEGFR-3 Second imm 98.8 2E-08 4.3E-13 54.4 4.8 50 72-121 1-58 (67)
111 cd04967 Ig1_Contactin First Ig 98.8 2.5E-08 5.4E-13 57.3 5.6 44 2-45 36-88 (91)
112 cd05749 Ig2_Tyro3_like Second 98.8 3.5E-08 7.7E-13 55.4 6.0 46 2-49 31-80 (81)
113 cd05865 Ig1_NCAM-1 First immun 98.8 4.9E-08 1.1E-12 56.7 6.8 62 60-121 6-88 (96)
114 cd05724 Ig2_Robo Second immuno 98.8 6.7E-08 1.5E-12 54.7 7.2 63 61-123 3-80 (86)
115 cd05742 Ig1_VEGFR_like First i 98.8 2.7E-08 5.8E-13 56.3 5.4 35 16-51 49-83 (84)
116 cd04975 Ig4_SCFR_like Fourth i 98.8 4.1E-08 8.8E-13 57.5 6.2 59 63-121 12-92 (101)
117 cd04979 Ig_Semaphorin_C Immuno 98.8 3.8E-08 8.2E-13 56.2 5.9 51 2-52 27-87 (89)
118 cd05749 Ig2_Tyro3_like Second 98.8 5E-08 1.1E-12 54.8 6.2 61 60-122 4-75 (81)
119 cd05732 Ig5_NCAM-1_like Fifth 98.7 5.5E-08 1.2E-12 56.2 6.6 68 54-122 2-90 (96)
120 cd05866 Ig1_NCAM-2 First immun 98.7 8E-08 1.7E-12 55.3 6.7 62 59-121 5-83 (92)
121 cd05752 Ig1_FcgammaR_like Frst 98.7 9.7E-08 2.1E-12 53.3 6.9 60 55-115 1-65 (78)
122 cd04969 Ig5_Contactin_like Fif 98.7 4.4E-08 9.5E-13 53.9 5.4 54 69-122 1-67 (73)
123 PF07679 I-set: Immunoglobulin 98.7 1E-07 2.3E-12 54.3 6.9 67 55-121 1-83 (90)
124 cd05726 Ig4_Robo Fhird immunog 98.7 3.8E-08 8.3E-13 56.4 5.0 54 69-122 1-75 (90)
125 cd05723 Ig4_Neogenin Fourth im 98.7 5.4E-08 1.2E-12 53.3 5.3 52 71-122 1-65 (71)
126 cd05868 Ig4_NrCAM Fourth immun 98.7 4.5E-08 9.8E-13 54.3 4.9 54 69-122 1-69 (76)
127 cd05857 Ig2_FGFR Second immuno 98.7 1E-07 2.2E-12 53.9 6.2 59 64-122 4-79 (85)
128 cd04974 Ig3_FGFR Third immunog 98.7 9.9E-08 2.2E-12 54.7 6.1 55 69-123 1-84 (90)
129 cd05859 Ig4_PDGFR-alpha Fourth 98.7 5.8E-08 1.3E-12 56.9 5.1 60 63-122 12-93 (101)
130 cd05758 Ig5_KIRREL3-like Fifth 98.7 2E-07 4.2E-12 54.3 7.3 68 54-122 2-93 (98)
131 cd04978 Ig4_L1-NrCAM_like Four 98.7 7E-08 1.5E-12 53.3 5.2 54 69-122 1-69 (76)
132 cd05735 Ig8_DSCAM Eight immuno 98.7 2.7E-07 5.8E-12 52.7 7.6 64 69-135 1-85 (88)
133 cd05893 Ig_Palladin_C C-termin 98.6 4.1E-08 8.9E-13 54.4 3.8 52 72-123 1-70 (75)
134 cd05892 Ig_Myotilin_C C-termin 98.6 6.5E-08 1.4E-12 53.6 4.4 51 72-122 1-69 (75)
135 cd05861 Ig1_PDGFR-alphabeta Fr 98.6 1.9E-07 4E-12 52.9 6.4 38 15-52 45-83 (84)
136 PF13895 Ig_2: Immunoglobulin 98.6 2E-07 4.3E-12 51.7 6.4 50 2-51 31-80 (80)
137 cd05729 Ig2_FGFR_like Second i 98.6 1.8E-07 4E-12 52.6 6.3 49 2-51 26-85 (85)
138 cd05746 Ig4_Peroxidasin Fourth 98.6 5.7E-08 1.2E-12 52.8 3.9 51 72-122 1-64 (69)
139 cd05754 Ig3_Perlecan_like Thir 98.6 1.2E-07 2.5E-12 53.7 5.3 47 2-49 34-84 (85)
140 smart00408 IGc2 Immunoglobulin 98.6 1.7E-07 3.7E-12 49.2 5.4 39 2-40 19-63 (63)
141 cd05862 Ig1_VEGFR First immuno 98.6 1.7E-07 3.7E-12 53.2 5.7 37 15-52 49-85 (86)
142 cd05891 Ig_M-protein_C C-termi 98.6 3.1E-07 6.8E-12 52.8 6.9 62 62-123 9-87 (92)
143 cd04977 Ig1_NCAM-1_like First 98.6 9.3E-07 2E-11 50.8 8.7 60 59-119 5-82 (92)
144 cd05758 Ig5_KIRREL3-like Fifth 98.6 2.2E-07 4.8E-12 54.0 6.2 47 2-49 34-97 (98)
145 cd05864 Ig2_VEGFR-2 Second imm 98.6 9.6E-08 2.1E-12 52.2 4.2 51 72-122 1-62 (70)
146 cd05722 Ig1_Neogenin First imm 98.6 3.9E-07 8.5E-12 52.6 7.0 62 60-121 5-87 (95)
147 cd05760 Ig2_PTK7 Second immuno 98.6 2.6E-07 5.6E-12 51.4 5.8 51 72-122 1-66 (77)
148 cd05855 Ig_TrkB_d5 Fifth domai 98.6 2.8E-07 6E-12 51.5 5.6 51 73-123 2-73 (79)
149 cd05743 Ig_Perlecan_D2_like Im 98.6 3E-07 6.4E-12 51.2 5.6 54 69-122 1-70 (78)
150 cd05764 Ig_2 Subgroup of the i 98.5 5.5E-07 1.2E-11 49.5 6.3 53 69-121 1-67 (74)
151 cd04967 Ig1_Contactin First Ig 98.5 1.6E-06 3.4E-11 49.7 8.3 56 68-123 18-88 (91)
152 cd05738 Ig2_RPTP_IIa_LAR_like 98.5 3.5E-07 7.6E-12 50.4 5.3 50 72-121 1-65 (74)
153 cd04976 Ig2_VEGFR Second immun 98.5 2.7E-07 5.9E-12 50.5 4.8 50 72-121 1-62 (71)
154 cd05873 Ig_Sema4D_like Immunog 98.5 1.8E-07 3.9E-12 53.2 4.1 37 2-38 27-70 (87)
155 cd05858 Ig3_FGFR-2 Third immun 98.5 4.2E-07 9.1E-12 52.0 5.7 55 69-123 1-84 (90)
156 cd05856 Ig2_FGFRL1-like Second 98.5 5.5E-07 1.2E-11 50.3 6.0 57 65-121 5-75 (82)
157 cd05744 Ig_Myotilin_C_like Imm 98.5 3E-07 6.4E-12 50.9 4.7 51 72-122 1-69 (75)
158 cd05854 Ig6_Contactin-2 Sixth 98.5 7.7E-07 1.7E-11 50.4 6.6 53 70-122 1-75 (85)
159 cd05871 Ig_Semaphorin_classIII 98.5 9.5E-07 2.1E-11 50.7 7.0 38 15-53 52-90 (91)
160 cd04973 Ig1_FGFR First immunog 98.5 1E-06 2.3E-11 49.1 6.9 58 63-121 3-72 (79)
161 cd05748 Ig_Titin_like Immunogl 98.5 3.5E-07 7.6E-12 50.3 4.9 52 71-122 1-68 (74)
162 cd05765 Ig_3 Subgroup of the i 98.5 3E-07 6.6E-12 51.4 4.7 54 69-122 1-75 (81)
163 cd05885 Ig2_Necl-4 Second immu 98.5 6.4E-07 1.4E-11 50.1 5.7 49 2-50 17-79 (80)
164 cd05876 Ig3_L1-CAM Third immun 98.5 2.3E-07 5.1E-12 50.7 3.9 51 72-122 1-64 (71)
165 cd05774 Ig_CEACAM_D1 First imm 98.5 1.1E-06 2.5E-11 51.7 6.9 37 15-51 69-105 (105)
166 cd04971 Ig_TrKABC_d5 Fifth dom 98.5 5.3E-07 1.1E-11 50.7 5.1 50 73-122 2-74 (81)
167 cd05725 Ig3_Robo Third immunog 98.5 5.7E-07 1.2E-11 48.8 5.0 50 72-121 1-62 (69)
168 cd05733 Ig6_L1-CAM_like Sixth 98.5 7.1E-07 1.5E-11 49.6 5.5 54 72-125 1-74 (77)
169 cd04970 Ig6_Contactin_like Six 98.5 1E-06 2.3E-11 49.8 6.3 52 70-121 1-74 (85)
170 PHA03376 BARF1; Provisional 98.5 3.6E-06 7.9E-11 53.9 9.2 72 16-88 87-158 (221)
171 cd05739 Ig3_RPTP_IIa_LAR_like 98.4 1.7E-06 3.7E-11 47.0 6.5 51 69-121 1-63 (69)
172 cd05754 Ig3_Perlecan_like Thir 98.4 9.7E-07 2.1E-11 49.9 5.6 62 61-122 8-80 (85)
173 cd05727 Ig2_Contactin-2-like S 98.4 3.6E-07 7.8E-12 52.8 3.7 40 2-41 36-85 (96)
174 cd05898 Ig5_KIRREL3 Fifth immu 98.4 2.1E-06 4.6E-11 49.9 6.9 68 54-122 2-93 (98)
175 cd05763 Ig_1 Subgroup of the i 98.4 9.1E-07 2E-11 48.8 4.9 50 72-121 1-67 (75)
176 cd05896 Ig1_IL1RAPL-1_like Fir 98.4 1.2E-06 2.6E-11 51.2 5.5 48 2-50 43-103 (104)
177 cd05734 Ig7_DSCAM Seventh immu 98.4 9.3E-07 2E-11 49.3 4.7 51 72-122 1-72 (79)
178 PHA02826 IL-1 receptor-like pr 98.4 1.5E-06 3.2E-11 58.1 6.2 38 2-39 166-211 (227)
179 cd05731 Ig3_L1-CAM_like Third 98.4 5.4E-07 1.2E-11 49.0 3.3 50 72-121 1-63 (71)
180 cd05742 Ig1_VEGFR_like First i 98.3 1.5E-06 3.2E-11 49.1 4.9 54 69-122 1-77 (84)
181 cd05874 Ig6_NrCAM Sixth immuno 98.3 1.3E-06 2.8E-11 48.5 4.5 52 72-123 1-72 (77)
182 cd05753 Ig2_FcgammaR_like Seco 98.3 5.7E-06 1.2E-10 46.6 7.1 55 64-118 9-72 (83)
183 cd05882 Ig1_Necl-1 First (N-te 98.3 1.8E-06 4E-11 50.0 5.1 33 16-50 62-94 (95)
184 cd05750 Ig_Pro_neuregulin Immu 98.3 2.6E-06 5.6E-11 46.8 4.8 51 72-122 1-71 (75)
185 cd05883 Ig2_Necl-2 Second immu 98.2 6.9E-06 1.5E-10 46.1 6.2 53 2-54 17-82 (82)
186 cd05736 Ig2_Follistatin_like S 98.2 5.7E-06 1.2E-10 45.6 5.6 50 72-121 1-66 (76)
187 cd05759 Ig2_KIRREL3-like Secon 98.2 5.4E-06 1.2E-10 46.5 5.4 50 2-51 17-82 (82)
188 cd05898 Ig5_KIRREL3 Fifth immu 98.2 5.9E-06 1.3E-10 48.1 5.4 33 16-49 64-97 (98)
189 cd05751 Ig1_LILRB1_like First 98.2 4.4E-06 9.6E-11 47.9 4.8 50 2-51 32-90 (91)
190 cd05886 Ig1_Nectin-1_like Firs 98.2 7.1E-06 1.5E-10 47.8 5.7 37 15-52 62-99 (99)
191 cd05875 Ig6_hNeurofascin_like 98.2 1E-05 2.2E-10 44.9 5.7 52 72-123 1-72 (77)
192 cd05882 Ig1_Necl-1 First (N-te 98.2 1.8E-05 3.8E-10 45.8 6.8 54 63-116 6-82 (95)
193 PF00047 ig: Immunoglobulin do 98.1 1.8E-06 3.9E-11 46.0 2.3 34 2-35 19-64 (64)
194 cd05873 Ig_Sema4D_like Immunog 98.1 2E-05 4.2E-10 44.9 6.6 58 61-119 3-71 (87)
195 cd05860 Ig4_SCFR Fourth immuno 98.1 1.2E-05 2.7E-10 46.7 5.7 50 2-52 36-100 (101)
196 cd07702 Ig2_VEGFR-1 Second imm 98.1 6.5E-06 1.4E-10 45.1 4.3 45 72-116 1-58 (72)
197 cd05756 Ig1_IL1R_like First im 98.1 8.2E-06 1.8E-10 47.1 4.6 58 64-121 9-87 (94)
198 smart00408 IGc2 Immunoglobulin 98.1 3.9E-05 8.4E-10 39.9 6.9 51 68-118 1-63 (63)
199 cd05775 Ig_SLAM-CD84_like_N N- 98.1 1.6E-05 3.5E-10 46.1 5.6 37 15-51 60-96 (97)
200 cd07701 Ig1_Necl-3 First (N-te 98.1 2E-05 4.3E-10 45.6 6.0 34 16-51 62-95 (95)
201 cd05887 Ig1_Nectin-3_like Firs 98.1 1.9E-05 4E-10 45.8 5.5 37 15-52 59-96 (96)
202 cd05872 Ig_Sema4B_like Immunog 98.1 2.1E-05 4.5E-10 44.5 5.6 35 2-36 27-67 (85)
203 cd05741 Ig_CEACAM_D1_like Firs 98.0 2.3E-05 5.1E-10 44.7 5.9 36 15-50 56-91 (92)
204 cd05729 Ig2_FGFR_like Second i 98.0 3.6E-05 7.8E-10 43.0 6.4 56 65-120 5-77 (85)
205 cd05853 Ig6_Contactin-4 Sixth 98.0 2.9E-05 6.2E-10 44.0 5.8 53 70-122 1-75 (85)
206 cd04979 Ig_Semaphorin_C Immuno 98.0 3.2E-05 7E-10 44.0 6.0 53 63-116 5-73 (89)
207 smart00410 IG_like Immunoglobu 98.0 5.5E-05 1.2E-09 41.7 6.8 49 2-51 26-85 (86)
208 smart00409 IG Immunoglobulin. 98.0 5.5E-05 1.2E-09 41.7 6.8 49 2-51 26-85 (86)
209 cd07690 Ig1_CD4 First immunogl 98.0 9.9E-06 2.2E-10 46.8 3.6 26 16-41 65-90 (94)
210 cd07701 Ig1_Necl-3 First (N-te 98.0 5.2E-05 1.1E-09 43.8 6.4 52 62-113 5-79 (95)
211 cd05727 Ig2_Contactin-2-like S 98.0 3.6E-05 7.9E-10 44.5 5.7 58 63-120 12-86 (96)
212 cd05888 Ig1_Nectin-4_like Frst 98.0 2.8E-05 6.1E-10 45.4 5.3 36 15-51 63-99 (100)
213 cd05717 Ig1_Necl-1-3_like Firs 98.0 4.2E-05 9E-10 44.1 5.9 34 16-51 62-95 (95)
214 cd05751 Ig1_LILRB1_like First 98.0 0.00011 2.4E-09 42.1 7.5 63 54-118 2-75 (91)
215 cd05713 Ig_MOG_like Immunoglob 98.0 2.4E-05 5.1E-10 45.5 4.8 35 16-51 65-99 (100)
216 cd05879 Ig_P0 Immunoglobulin ( 97.9 4.2E-05 9E-10 45.9 5.8 36 15-50 79-115 (116)
217 cd05895 Ig_Pro_neuregulin-1 Im 97.9 2.6E-05 5.6E-10 43.0 4.4 51 72-122 1-72 (76)
218 cd05845 Ig2_L1-CAM_like Second 97.9 5.2E-05 1.1E-09 43.8 5.7 57 61-117 10-82 (95)
219 cd05714 Ig_CSPGs_LP Immunoglob 97.9 4.7E-05 1E-09 44.8 5.1 37 15-52 67-103 (106)
220 cd05861 Ig1_PDGFR-alphabeta Fr 97.9 9.4E-05 2E-09 41.7 6.0 50 69-118 1-70 (84)
221 cd05877 Ig_LP_like Immunoglobu 97.8 4.7E-05 1E-09 44.7 4.8 36 16-52 68-103 (106)
222 cd07691 Ig_CD3_gamma_delta Imm 97.8 4.7E-05 1E-09 40.8 4.0 47 2-53 19-65 (69)
223 cd05718 Ig1_PVR_like First imm 97.8 8.4E-05 1.8E-09 42.9 5.4 37 15-52 61-98 (98)
224 cd05901 Ig_Versican Immunoglob 97.8 0.00027 5.9E-09 42.4 7.5 37 15-52 78-114 (117)
225 cd05900 Ig_Aggrecan Immunoglob 97.8 0.00014 2.9E-09 43.4 5.9 37 15-52 73-109 (112)
226 PF00047 ig: Immunoglobulin do 97.8 0.00012 2.5E-09 38.8 5.1 46 69-114 1-63 (64)
227 PF13895 Ig_2: Immunoglobulin 97.7 0.00027 5.8E-09 38.8 6.4 59 55-115 2-64 (80)
228 PF13927 Ig_3: Immunoglobulin 97.7 8.8E-05 1.9E-09 40.2 4.1 23 15-37 53-75 (75)
229 cd05846 Ig1_MRC-OX-2_like Firs 97.7 0.00012 2.6E-09 42.4 4.8 35 16-51 61-96 (97)
230 cd05878 Ig_Aggrecan_like Immun 97.7 0.00016 3.5E-09 42.9 5.1 37 16-53 72-108 (110)
231 cd05757 Ig2_IL1R_like Second i 97.6 0.00015 3.2E-09 41.7 4.7 58 64-121 5-79 (92)
232 cd05845 Ig2_L1-CAM_like Second 97.6 5.7E-05 1.2E-09 43.6 3.0 40 2-41 36-84 (95)
233 PF13927 Ig_3: Immunoglobulin 97.6 0.00017 3.7E-09 39.0 4.8 58 55-113 2-71 (75)
234 cd05889 Ig1_DNAM-1_like First 97.6 0.00024 5.1E-09 41.2 5.5 33 15-48 59-92 (96)
235 cd05711 Ig_FcalphaRI Immunoglo 97.6 0.00019 4.1E-09 41.4 4.5 50 2-51 31-94 (94)
236 cd05902 Ig_Neurocan Immunoglob 97.6 0.00017 3.6E-09 42.9 4.3 37 15-52 71-107 (110)
237 cd05717 Ig1_Necl-1-3_like Firs 97.6 0.0006 1.3E-08 39.2 6.5 52 63-114 6-80 (95)
238 cd05871 Ig_Semaphorin_classIII 97.6 0.00085 1.8E-08 38.4 7.0 49 64-113 6-70 (91)
239 cd05711 Ig_FcalphaRI Immunoglo 97.5 0.0012 2.6E-08 38.0 7.5 62 55-118 2-77 (94)
240 cd07690 Ig1_CD4 First immunogl 97.5 0.0002 4.4E-09 41.3 4.2 54 65-118 3-89 (94)
241 cd05880 Ig_EVA1 Immunoglobulin 97.5 0.00021 4.5E-09 42.8 4.2 35 16-50 79-114 (115)
242 cd05862 Ig1_VEGFR First immuno 97.5 0.00075 1.6E-08 38.2 6.2 53 69-121 1-77 (86)
243 cd05715 Ig_P0-like Immunoglobu 97.4 0.0003 6.5E-09 42.1 4.4 35 16-50 80-115 (116)
244 cd05860 Ig4_SCFR Fourth immuno 97.4 0.0011 2.4E-08 38.7 6.5 59 63-121 12-92 (101)
245 cd05761 Ig2_Necl-1-4_like Seco 97.4 0.00069 1.5E-08 38.0 5.4 49 2-50 17-81 (82)
246 cd07705 Ig2_Necl-1 Second immu 97.3 0.0011 2.4E-08 37.2 5.7 49 2-50 17-82 (83)
247 PHA02633 hypothetical protein; 97.3 0.0015 3.3E-08 34.3 5.0 39 15-54 17-55 (63)
248 KOG3515|consensus 97.2 0.0022 4.8E-08 49.5 7.9 125 2-126 40-195 (741)
249 PHA02987 Ig domain OX-2-like p 97.2 0.0022 4.7E-08 41.4 6.7 39 15-53 84-123 (189)
250 cd04983 IgV_TCR_alpha_like Imm 97.2 0.0013 2.9E-08 38.6 5.1 53 60-112 4-86 (109)
251 PF07686 V-set: Immunoglobulin 97.2 0.00066 1.4E-08 39.8 3.7 23 16-38 79-101 (114)
252 cd05899 IgV_TCR_beta Immunoglo 97.1 0.0018 4E-08 38.2 5.2 51 60-111 4-87 (110)
253 cd05872 Ig_Sema4B_like Immunog 97.1 0.0018 3.9E-08 36.6 4.6 52 64-116 6-67 (85)
254 smart00409 IG Immunoglobulin. 97.1 0.0062 1.3E-07 33.2 6.9 50 64-113 4-68 (86)
255 smart00410 IG_like Immunoglobu 97.1 0.0062 1.3E-07 33.2 6.9 50 64-113 4-68 (86)
256 cd05881 Ig1_Necl-2 First (N-te 97.1 0.002 4.3E-08 37.3 4.8 23 16-38 62-84 (95)
257 cd00098 IgC Immunoglobulin Con 97.0 0.0011 2.3E-08 38.0 3.2 38 2-39 32-85 (95)
258 cd00099 IgV Immunoglobulin var 97.0 0.001 2.2E-08 38.8 3.1 25 16-40 67-91 (105)
259 cd00096 Ig Immunoglobulin doma 96.9 0.0028 6.1E-08 32.9 4.6 38 2-39 15-66 (74)
260 cd05881 Ig1_Necl-2 First (N-te 96.9 0.0069 1.5E-07 35.0 6.0 53 63-115 6-81 (95)
261 cd04982 IgV_TCR_gamma Immunogl 96.8 0.0057 1.2E-07 36.4 5.7 51 61-111 5-92 (116)
262 cd04980 IgV_L_kappa Immunoglob 96.8 0.004 8.7E-08 36.5 4.9 53 59-111 5-86 (106)
263 cd05774 Ig_CEACAM_D1 First imm 96.8 0.0055 1.2E-07 36.1 5.4 50 64-113 8-87 (105)
264 cd05884 Ig2_Necl-3 Second immu 96.8 0.0037 8E-08 35.1 4.4 38 2-39 17-69 (83)
265 cd07694 Ig2_CD4 Second immunog 96.8 0.0091 2E-07 33.8 5.7 37 2-38 33-73 (88)
266 cd07692 Ig_CD3_epsilon Immunog 96.7 0.0036 7.9E-08 33.4 3.5 35 2-37 21-55 (65)
267 cd00099 IgV Immunoglobulin var 96.6 0.004 8.6E-08 36.2 4.0 49 66-114 3-85 (105)
268 cd04983 IgV_TCR_alpha_like Imm 96.6 0.0022 4.8E-08 37.6 2.8 24 16-39 70-93 (109)
269 cd05741 Ig_CEACAM_D1_like Firs 96.6 0.0061 1.3E-07 34.5 4.6 22 94-115 55-76 (92)
270 cd05885 Ig2_Necl-4 Second immu 96.5 0.042 9E-07 30.7 7.0 50 72-121 2-70 (80)
271 cd05897 Ig2_IL1R2_like Second 96.4 0.016 3.5E-07 33.5 5.4 57 65-121 6-82 (95)
272 cd04984 IgV_L_lambda Immunoglo 96.4 0.0077 1.7E-07 34.7 4.1 23 16-38 63-85 (98)
273 PF07686 V-set: Immunoglobulin 96.4 0.013 2.9E-07 34.1 5.2 54 60-113 7-96 (114)
274 cd05900 Ig_Aggrecan Immunoglob 96.3 0.024 5.3E-07 33.7 6.0 27 95-121 73-99 (112)
275 cd05755 Ig2_ICAM-1_like Second 96.3 0.011 2.5E-07 34.4 4.4 39 2-41 36-87 (100)
276 cd04980 IgV_L_kappa Immunoglob 96.3 0.007 1.5E-07 35.4 3.5 23 16-38 71-93 (106)
277 cd07706 IgV_TCR_delta Immunogl 96.1 0.031 6.6E-07 33.3 5.7 53 59-111 4-87 (116)
278 smart00407 IGc1 Immunoglobulin 96.1 0.02 4.2E-07 31.4 4.4 37 2-38 18-70 (75)
279 smart00406 IGv Immunoglobulin 96.1 0.0035 7.7E-08 34.4 1.4 20 16-35 62-81 (81)
280 cd05716 Ig_pIgR Immunoglobulin 96.0 0.012 2.5E-07 33.9 3.5 23 16-38 64-86 (98)
281 cd07700 IgV_CD8_beta Immunoglo 96.0 0.012 2.5E-07 34.6 3.4 21 17-37 73-93 (107)
282 cd05899 IgV_TCR_beta Immunoglo 95.9 0.009 1.9E-07 35.2 2.8 23 16-38 72-94 (110)
283 cd04984 IgV_L_lambda Immunoglo 95.9 0.023 5E-07 32.7 4.4 46 66-111 3-78 (98)
284 PF08204 V-set_CD47: CD47 immu 95.7 0.02 4.4E-07 34.9 3.8 49 2-52 49-120 (130)
285 cd05880 Ig_EVA1 Immunoglobulin 95.6 0.1 2.2E-06 31.2 6.5 15 97-111 80-94 (115)
286 cd05712 Ig_Siglec_N Immunoglob 95.5 0.1 2.2E-06 31.2 6.3 20 97-116 81-100 (119)
287 cd05712 Ig_Siglec_N Immunoglob 95.3 0.021 4.7E-07 34.2 3.0 23 16-38 80-102 (119)
288 PHA03042 CD47-like protein; Pr 95.3 0.076 1.7E-06 36.3 5.7 40 1-41 52-95 (286)
289 cd05878 Ig_Aggrecan_like Immun 95.3 0.078 1.7E-06 31.4 5.2 24 96-119 72-95 (110)
290 cd07706 IgV_TCR_delta Immunogl 95.3 0.038 8.2E-07 32.8 3.9 23 16-38 72-94 (116)
291 cd05718 Ig1_PVR_like First imm 95.2 0.081 1.8E-06 30.2 5.1 21 94-114 60-80 (98)
292 cd05759 Ig2_KIRREL3-like Secon 95.2 0.23 4.9E-06 27.4 6.8 45 72-116 2-68 (82)
293 PHA02987 Ig domain OX-2-like p 95.2 0.2 4.3E-06 32.6 7.1 57 64-120 25-110 (189)
294 PF11465 Receptor_2B4: Natural 95.1 0.14 2.9E-06 30.2 5.7 37 15-51 70-106 (108)
295 cd07694 Ig2_CD4 Second immunog 95.0 0.17 3.7E-06 28.7 5.6 51 65-115 10-70 (88)
296 cd05715 Ig_P0-like Immunoglobu 94.9 0.4 8.8E-06 28.4 7.7 16 96-111 80-95 (116)
297 cd04982 IgV_TCR_gamma Immunogl 94.9 0.025 5.4E-07 33.6 2.4 22 16-37 77-98 (116)
298 cd05714 Ig_CSPGs_LP Immunoglob 94.9 0.089 1.9E-06 30.7 4.7 20 95-114 67-86 (106)
299 PF07354 Sp38: Zona-pellucida- 94.8 0.036 7.9E-07 37.7 3.2 38 2-39 15-60 (271)
300 cd05720 Ig_CD8_alpha Immunoglo 94.6 0.093 2E-06 30.7 4.2 15 97-111 70-84 (104)
301 cd05879 Ig_P0 Immunoglobulin ( 94.6 0.54 1.2E-05 28.1 7.8 24 95-118 79-104 (116)
302 cd05896 Ig1_IL1RAPL-1_like Fir 94.6 0.27 5.8E-06 28.9 6.0 50 64-113 10-87 (104)
303 cd05847 IgC_CH2_IgE CH2 domain 94.5 0.084 1.8E-06 30.4 3.8 38 2-39 33-86 (94)
304 cd07699 IgC_L Immunoglobulin C 94.5 0.066 1.4E-06 31.1 3.4 37 2-38 36-88 (100)
305 cd05720 Ig_CD8_alpha Immunoglo 94.5 0.033 7.2E-07 32.6 2.1 22 16-37 69-90 (104)
306 cd05716 Ig_pIgR Immunoglobulin 94.4 0.096 2.1E-06 30.0 4.0 51 65-115 3-83 (98)
307 cd05775 Ig_SLAM-CD84_like_N N- 94.3 0.082 1.8E-06 30.5 3.6 20 95-114 60-79 (97)
308 cd05719 Ig2_PVR_like Second im 94.3 0.2 4.4E-06 28.8 5.1 35 16-50 59-94 (95)
309 cd05877 Ig_LP_like Immunoglobu 94.1 0.18 4E-06 29.3 4.8 19 96-114 68-86 (106)
310 KOG1480|consensus 94.0 0.033 7E-07 43.3 1.7 51 2-52 162-219 (909)
311 PF05790 C2-set: Immunoglobuli 94.0 0.58 1.3E-05 26.1 7.1 33 4-36 31-63 (80)
312 cd05846 Ig1_MRC-OX-2_like Firs 93.9 0.27 5.8E-06 28.2 5.2 20 94-113 59-78 (97)
313 KOG3515|consensus 93.9 0.32 7E-06 38.1 6.8 86 2-88 434-531 (741)
314 cd07700 IgV_CD8_beta Immunoglo 93.4 0.21 4.6E-06 29.2 4.3 15 97-111 73-87 (107)
315 cd07705 Ig2_Necl-1 Second immu 93.4 0.75 1.6E-05 25.6 7.5 60 72-131 2-81 (83)
316 cd05755 Ig2_ICAM-1_like Second 93.3 0.83 1.8E-05 26.6 6.4 29 60-88 7-38 (100)
317 cd05771 IgC_Tapasin_R Tapasin- 93.1 0.26 5.6E-06 30.3 4.4 24 16-39 108-131 (139)
318 cd04981 IgV_H Immunoglobulin ( 93.1 0.26 5.6E-06 29.4 4.3 18 97-114 77-95 (117)
319 cd05888 Ig1_Nectin-4_like Frst 93.1 0.4 8.7E-06 27.7 5.0 20 94-113 62-81 (100)
320 cd07698 IgC_MHC_I_alpha3 Class 93.0 0.33 7.1E-06 27.7 4.5 18 22-39 66-83 (93)
321 cd05772 IgC_SIRP Signal-regula 92.8 0.66 1.4E-05 27.6 5.7 36 2-38 40-91 (111)
322 cd05770 IgC_beta2m Class I maj 92.7 0.38 8.1E-06 27.6 4.4 37 2-38 34-82 (93)
323 cd05713 Ig_MOG_like Immunoglob 92.6 0.47 1E-05 27.2 4.9 18 96-113 65-82 (100)
324 PF07654 C1-set: Immunoglobuli 92.4 0.21 4.6E-06 27.7 3.1 35 2-39 27-77 (83)
325 cd05766 IgC_MHC_II_beta Class 92.3 0.44 9.6E-06 27.3 4.4 37 2-38 33-82 (94)
326 cd04981 IgV_H Immunoglobulin ( 92.0 0.15 3.2E-06 30.5 2.3 21 17-37 77-97 (117)
327 PF08205 C2-set_2: CD80-like C 92.0 0.5 1.1E-05 26.4 4.4 38 2-39 32-84 (89)
328 cd07703 Ig2_Nectin-2_like Seco 91.8 0.42 9E-06 27.6 3.9 24 16-39 59-82 (95)
329 cd05767 IgC_MHC_II_alpha Class 91.8 0.46 9.9E-06 27.3 4.0 34 2-38 34-83 (94)
330 PF08205 C2-set_2: CD80-like C 91.7 0.96 2.1E-05 25.2 5.4 20 69-88 14-34 (89)
331 cd07698 IgC_MHC_I_alpha3 Class 91.6 0.54 1.2E-05 26.7 4.2 20 69-88 14-35 (93)
332 cd07696 IgC_CH3 CH3 domain (th 91.4 0.45 9.8E-06 27.4 3.8 12 28-39 75-86 (96)
333 cd05766 IgC_MHC_II_beta Class 91.2 0.88 1.9E-05 26.1 4.8 44 67-111 12-59 (94)
334 cd05767 IgC_MHC_II_alpha Class 90.5 1.6 3.5E-05 25.0 5.5 43 68-111 14-60 (94)
335 cd05769 IgC_TCR_beta T cell re 90.4 0.67 1.4E-05 27.8 3.9 21 68-88 17-39 (115)
336 cd05772 IgC_SIRP Signal-regula 90.1 1.6 3.5E-05 25.9 5.4 28 65-92 17-48 (111)
337 cd04985 IgC_CH1 CH1 domain (fi 89.7 1.6 3.5E-05 25.0 5.1 21 68-88 15-37 (95)
338 cd00098 IgC Immunoglobulin Con 89.6 1.6 3.5E-05 24.5 5.1 21 68-88 12-34 (95)
339 PF07654 C1-set: Immunoglobuli 89.4 1.9 4E-05 23.8 5.1 26 68-93 7-36 (83)
340 PHA02982 hypothetical protein; 89.2 4.9 0.00011 26.9 8.4 69 15-88 99-167 (251)
341 cd07699 IgC_L Immunoglobulin C 89.2 0.77 1.7E-05 26.6 3.5 26 67-92 15-44 (100)
342 cd05770 IgC_beta2m Class I maj 88.7 1.5 3.3E-05 25.1 4.4 26 67-92 13-42 (93)
343 PHA03270 envelope glycoprotein 88.5 8.4 0.00018 28.6 8.8 70 17-88 183-256 (466)
344 cd05901 Ig_Versican Immunoglob 88.3 3.7 8E-05 24.7 6.0 27 95-121 78-104 (117)
345 cd07697 IgC_TCR_gamma T cell r 87.8 1.9 4.2E-05 24.9 4.5 22 67-88 14-37 (96)
346 cd05768 IgC_CH4 CH4 domain (fo 87.4 1.6 3.4E-05 25.5 4.0 26 67-92 14-43 (102)
347 cd05761 Ig2_Necl-1-4_like Seco 87.2 3.5 7.6E-05 22.7 7.0 17 72-88 2-19 (82)
348 cd05889 Ig1_DNAM-1_like First 85.2 1.7 3.7E-05 25.1 3.4 19 94-112 58-76 (96)
349 cd05886 Ig1_Nectin-1_like Firs 83.8 1.9 4.2E-05 25.0 3.2 23 93-115 60-84 (99)
350 cd05887 Ig1_Nectin-3_like Firs 82.2 1.8 3.8E-05 25.0 2.6 29 93-121 57-88 (96)
351 PHA03269 envelope glycoprotein 82.0 12 0.00026 28.4 7.1 71 16-88 289-364 (566)
352 cd07696 IgC_CH3 CH3 domain (th 81.3 2.6 5.6E-05 24.3 3.1 24 65-88 10-36 (96)
353 PF11465 Receptor_2B4: Natural 81.1 9.1 0.0002 22.7 5.8 74 45-120 5-97 (108)
354 COG5475 Uncharacterized small 80.0 6.4 0.00014 20.3 3.8 26 15-42 17-42 (60)
355 PHA03271 envelope glycoprotein 79.9 13 0.00028 27.6 6.7 71 16-88 207-282 (490)
356 cd07704 Ig2_Nectin-3-4_like Se 77.8 5.2 0.00011 23.2 3.6 24 16-39 61-84 (97)
357 PHA02914 Immunoglobulin-like d 76.8 7.1 0.00015 28.8 4.6 41 16-58 81-121 (500)
358 PHA03273 envelope glycoprotein 75.3 33 0.00071 25.9 9.7 70 17-88 199-272 (486)
359 TIGR00864 PCC polycystin catio 74.9 75 0.0016 29.8 11.2 97 23-122 1834-1942(2740)
360 PHA02935 Hypothetical protein; 73.6 24 0.00052 23.5 6.4 48 3-50 70-136 (349)
361 cd05721 IgV_CTLA-4 Immunoglobu 72.7 4.4 9.4E-05 24.3 2.4 21 16-36 74-94 (115)
362 cd04986 IgC_CH2 CH2 domain (se 69.5 11 0.00025 21.9 3.7 24 65-88 15-41 (99)
363 cd07689 Ig2_VCAM-1 Second immu 66.5 24 0.00051 20.6 5.7 18 67-84 13-30 (99)
364 PHA03376 BARF1; Provisional 65.5 15 0.00032 24.4 3.8 26 96-121 87-112 (221)
365 PHA02914 Immunoglobulin-like d 63.5 39 0.00084 25.2 5.9 23 16-38 346-368 (500)
366 KOG4597|consensus 61.4 9.2 0.0002 28.8 2.7 36 16-52 257-292 (560)
367 PHA03273 envelope glycoprotein 61.1 47 0.001 25.2 6.1 79 2-88 270-372 (486)
368 PHA03282 envelope glycoprotein 58.7 32 0.0007 26.1 5.0 39 14-52 122-161 (540)
369 PHA03052 Hypothetical protein; 57.1 27 0.00059 18.8 3.3 27 62-88 5-34 (69)
370 PF01688 Herpes_gI: Alphaherpe 56.6 40 0.00087 21.6 4.6 34 16-50 124-157 (161)
371 KOG1480|consensus 47.8 1.8 3.8E-05 34.3 -2.8 104 30-133 102-222 (909)
372 PHA03282 envelope glycoprotein 46.8 24 0.00051 26.7 2.8 21 16-36 333-353 (540)
373 PF02480 Herpes_gE: Alphaherpe 46.2 6.7 0.00014 29.3 0.0 39 15-53 88-126 (439)
374 PHA03189 UL14 tegument protein 45.7 48 0.001 23.7 4.0 18 22-39 139-156 (348)
375 PF06832 BiPBP_C: Penicillin-B 45.1 55 0.0012 18.2 5.4 37 2-41 45-83 (89)
376 PHA03286 envelope glycoprotein 45.1 71 0.0015 24.2 4.9 38 15-52 126-163 (492)
377 PHA03283 envelope glycoprotein 44.8 86 0.0019 24.2 5.4 39 14-53 132-170 (542)
378 PF11049 KSHV_K1: Glycoprotein 43.5 53 0.0012 17.6 4.0 33 2-38 13-46 (71)
379 PHA03286 envelope glycoprotein 43.4 29 0.00064 26.1 2.8 20 17-36 308-327 (492)
380 PF02480 Herpes_gE: Alphaherpe 41.3 40 0.00087 25.4 3.4 22 15-36 268-289 (439)
381 PHA03290 envelope glycoprotein 41.2 96 0.0021 22.5 4.9 37 15-52 128-164 (357)
382 TIGR00864 PCC polycystin catio 40.3 3E+02 0.0064 26.5 8.5 96 23-122 1664-1771(2740)
383 PF11327 DUF3129: Protein of u 36.0 73 0.0016 20.9 3.6 22 17-38 94-115 (184)
384 KOG4597|consensus 35.1 42 0.00091 25.6 2.6 60 62-121 204-284 (560)
385 PHA03289 envelope glycoprotein 33.6 1.4E+02 0.0029 21.7 4.7 35 16-51 122-156 (352)
386 PF00801 PKD: PKD domain; Int 31.8 45 0.00098 17.4 1.9 52 65-119 7-66 (69)
387 PHA03283 envelope glycoprotein 31.5 58 0.0013 25.1 2.8 22 15-36 314-335 (542)
388 PHA03292 envelope glycoprotein 30.5 1.5E+02 0.0032 22.0 4.6 35 16-51 128-162 (413)
389 PHA03291 envelope glycoprotein 29.8 1.8E+02 0.0039 21.4 4.9 36 16-52 129-164 (401)
390 PF03921 ICAM_N: Intercellular 26.2 1.4E+02 0.003 17.1 5.9 52 57-109 6-65 (91)
391 PHA03240 envelope glycoprotein 24.2 66 0.0014 21.8 1.9 26 16-41 105-130 (258)
392 PF09926 DUF2158: Uncharacteri 23.5 1.2E+02 0.0026 15.4 3.3 27 15-41 13-42 (53)
393 PHA03281 envelope glycoprotein 22.1 3.1E+02 0.0067 21.7 5.1 39 15-53 297-335 (642)
394 PHA03281 envelope glycoprotein 21.2 1.1E+02 0.0024 23.8 2.8 22 15-36 474-495 (642)
395 PF11088 RL11D: Glycoprotein e 20.0 68 0.0015 18.6 1.2 20 16-35 60-79 (98)
No 1
>KOG3513|consensus
Probab=99.74 E-value=6.9e-17 Score=123.38 Aligned_cols=121 Identities=20% Similarity=0.199 Sum_probs=106.5
Q ss_pred eEEEECCEE-ee------ecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEE
Q psy12134 2 LVIFFSKIE-LL------YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEI 74 (139)
Q Consensus 2 ~~W~~~~~~-~~------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l 74 (139)
+.|.|.+++ +. .....|.|.+++.+|+|.|.|.|.|..|. ....+.+.|..+|.+...+++.++..|++++|
T Consensus 273 i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~-~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~ 351 (1051)
T KOG3513|consen 273 IKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGS-ATHSGHVTVYAPPYWLQKPQDTEADTGSNVTL 351 (1051)
T ss_pred EEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEeccccc-ceeeEEEEEecCchhhcccceeEecCCCCeEE
Confidence 789998874 22 12588999999999999999999999996 68899999999999998999999999999999
Q ss_pred EEEeeeCCCcEEEE--cCee-----------eecceEEEEecCCCCceeE--EEEcccCCCCCC
Q psy12134 75 ICNVYANPPAKRFD--EGTR-----------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPDS 123 (139)
Q Consensus 75 ~C~~~~~p~~~~~~--~~~~-----------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~ 123 (139)
.|.+.|.|.|.+.| |+.. ...+.|.|..+...|+|.| .|+|.+|..-.+
T Consensus 352 eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~an 415 (1051)
T KOG3513|consen 352 ECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYAN 415 (1051)
T ss_pred EEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeee
Confidence 99999999999999 4432 3568999999999999999 899999987765
No 2
>KOG3513|consensus
Probab=99.66 E-value=1.4e-15 Score=116.32 Aligned_cols=121 Identities=19% Similarity=0.266 Sum_probs=100.8
Q ss_pred CeEEEECCEEeee---------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC-CeEEecC--ceEeeCC
Q psy12134 1 MLVIFFSKIELLY---------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP-PEVSVEK--QWIHTAP 68 (139)
Q Consensus 1 ~~~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~-p~~~~~~--~~~~~~~ 68 (139)
.+.|++||.++.. ..+.|+|.+++..|+|.|+|.|+|..|. .-+.+.|.|... |.+...+ +...+..
T Consensus 362 ~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~-i~anA~L~V~a~~P~f~~~p~~~~~~a~~ 440 (1051)
T KOG3513|consen 362 TVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGT-IYANAELKVLASAPVFPLNPVERKVMAVV 440 (1051)
T ss_pred ceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccce-EeeeeEEEEEccCCCCCCCccceEEEEEe
Confidence 3789999988753 3589999999999999999999999999 588899999864 6665443 3345678
Q ss_pred CCeEEEEEEeeeCCCcEEEEcC--ee---------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 69 DMRAEIICNVYANPPAKRFDEG--TR---------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 69 g~~~~l~C~~~~~p~~~~~~~~--~~---------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
|.++.+.|...+.|.+.+.|.. .. ..+++|.|.++..+|+|.| .|.|.+|....
T Consensus 441 g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~ 507 (1051)
T KOG3513|consen 441 GGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAES 507 (1051)
T ss_pred CCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccce
Confidence 9999999999999999999921 11 3578999999999999999 89999998875
No 3
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.58 E-value=9.2e-14 Score=92.40 Aligned_cols=94 Identities=12% Similarity=0.007 Sum_probs=71.0
Q ss_pred CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeee-----CCCcEEEE-
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYA-----NPPAKRFD- 88 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-----~p~~~~~~- 88 (139)
+..|.|.+++.+|+|.|+|.+.|..+. ....+.|.|..++ ....+..|+.+.|.|.+.+ .|.|.+.|
T Consensus 97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~-~~~~i~L~V~~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~Wy 169 (227)
T PHA02826 97 SENLWIGNVINIDEGIYICTISSGNIC-EESTIRLTFDSGT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWY 169 (227)
T ss_pred CCeEEECCCChHHCEEEEEEEEECCcc-eEEEEEEEEecCC------ccceEecCCCEEEEeeCCCCccccCCCceEEEE
Confidence 368999999999999999999997766 5677777775432 2234567999999999863 35678888
Q ss_pred -cCeee----------ecceEEEEecCCCCceeEEEEc
Q psy12134 89 -EGTRF----------DEGTVTAKVLQPFSERTLSVQD 115 (139)
Q Consensus 89 -~~~~~----------~~~~l~i~~~~~~d~g~y~~~n 115 (139)
++..+ ..+.|.|.++..+|+|.|.|.-
T Consensus 170 Kng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a 207 (227)
T PHA02826 170 KNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNL 207 (227)
T ss_pred ECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEE
Confidence 44432 2347999999999999994433
No 4
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.58 E-value=1.1e-13 Score=96.83 Aligned_cols=115 Identities=17% Similarity=0.234 Sum_probs=82.2
Q ss_pred eEEEECCEEee------ecCCeEEEcccCCCCCEEEEEEEEcCCCCce---eeeEEEEEec---CCeEEecCceEeeCCC
Q psy12134 2 LVIFFSKIELL------YNRESLDLDRVTLKLAGLYQCIASNNIGEST---SKNFIVNVIY---PPEVSVEKQWIHTAPD 69 (139)
Q Consensus 2 ~~W~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~---s~~~~l~v~~---~p~~~~~~~~~~~~~g 69 (139)
++|++++. +. ...+.|.|.+++.+|+|.|+|.+.|..+... ...+.|.|.. +|.+ ..+....+..|
T Consensus 158 i~W~k~~~-~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~G 235 (326)
T PHA02785 158 IIWSGHRR-LRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QLPEGVVTSIG 235 (326)
T ss_pred EEEccCCc-cCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-cCCCcEEecCC
Confidence 78987542 21 1246899999999999999999999876531 2344565642 3433 33455677789
Q ss_pred CeEEEEEEeeeCCCc---EEEE--cCeee-------------------------ecceEEEEecCCCCceeE--EEEccc
Q psy12134 70 MRAEIICNVYANPPA---KRFD--EGTRF-------------------------DEGTVTAKVLQPFSERTL--SVQDKI 117 (139)
Q Consensus 70 ~~~~l~C~~~~~p~~---~~~~--~~~~~-------------------------~~~~l~i~~~~~~d~g~y--~~~n~~ 117 (139)
+.+.|.|.+.+.|++ .++| ++..+ ....|.|.++..+|.|.| .|.|..
T Consensus 236 ~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~ 315 (326)
T PHA02785 236 SNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIP 315 (326)
T ss_pred CcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEecc
Confidence 999999999988864 6788 44321 023688999999999999 778876
Q ss_pred C
Q psy12134 118 G 118 (139)
Q Consensus 118 g 118 (139)
|
T Consensus 316 ~ 316 (326)
T PHA02785 316 S 316 (326)
T ss_pred C
Confidence 3
No 5
>KOG4222|consensus
Probab=99.57 E-value=5.1e-15 Score=113.26 Aligned_cols=122 Identities=20% Similarity=0.171 Sum_probs=106.0
Q ss_pred eEEEECCEEee---------ecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeE
Q psy12134 2 LVIFFSKIELL---------YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRA 72 (139)
Q Consensus 2 ~~W~~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~ 72 (139)
++|.|+|.++. ..++.|.|.++..+|.|.|.|.+.|+.|...+....|.|.++|-+...+....+..|..+
T Consensus 164 vSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~ 243 (1281)
T KOG4222|consen 164 VSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAA 243 (1281)
T ss_pred ceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeeccccc
Confidence 78999998875 346899999999999999999999999998899999999999999888888888899999
Q ss_pred EEEEEeeeCCCcEEEEcCee-----------eecceEEEEecCCCCceeE--EEEcccCCCCCC
Q psy12134 73 EIICNVYANPPAKRFDEGTR-----------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPDS 123 (139)
Q Consensus 73 ~l~C~~~~~p~~~~~~~~~~-----------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~ 123 (139)
.+.|.+.+.|.|.+.|.+.. .+..++.|.++...|+|+| .+.|.+|.-..+
T Consensus 244 ~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~as 307 (1281)
T KOG4222|consen 244 EFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEAS 307 (1281)
T ss_pred ccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccccccccc
Confidence 99999999999999884432 1336788899999999999 788888776554
No 6
>KOG4194|consensus
Probab=99.55 E-value=5.6e-14 Score=102.47 Aligned_cols=107 Identities=19% Similarity=0.267 Sum_probs=95.2
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEEcCee---
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDEGTR--- 92 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~~~~--- 92 (139)
+.|.+.+|+-.|.|.|+|.+.|..|+..+..+.|.|...|.+...+.+.....|....|.|.+.|-|.|.+-|.+..
T Consensus 574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtd 653 (873)
T KOG4194|consen 574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTD 653 (873)
T ss_pred heeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCC
Confidence 78999999999999999999999999899999999999999999998889999999999999999999999993322
Q ss_pred e------------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 93 F------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 93 ~------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
+ .+..+.|.++..+|.|.| .|+|..|.-+.
T Consensus 654 FPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isa 697 (873)
T KOG4194|consen 654 FPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISA 697 (873)
T ss_pred CchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceee
Confidence 1 346789999999999999 78888776543
No 7
>KOG4221|consensus
Probab=99.51 E-value=7.4e-14 Score=107.65 Aligned_cols=121 Identities=18% Similarity=0.216 Sum_probs=102.1
Q ss_pred eEEEECCEEeeec--------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEE
Q psy12134 2 LVIFFSKIELLYN--------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 73 (139)
Q Consensus 2 ~~W~~~~~~~~~~--------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~ 73 (139)
|.|+||+..+..+ .+.|.|.+++..|+|.|+|+|.|.... ..+.+.|.|+.+|.+...+....+.++.++.
T Consensus 269 v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~-idasaev~V~a~P~~~~~p~~l~A~e~~die 347 (1381)
T KOG4221|consen 269 VKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDS-IDASAEVTVLAPPGFTKAPTTLVAHESMDIE 347 (1381)
T ss_pred eEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcc-cccceEEEEEcCCCCCCCCcceeeeecccee
Confidence 7899999887665 478999999999999999999996655 5788899999999999888877888899999
Q ss_pred EEEEeeeCCCcEEEE--cCeee---------ecceEEEEecCCCCceeE--EEEcccCCCCCC
Q psy12134 74 IICNVYANPPAKRFD--EGTRF---------DEGTVTAKVLQPFSERTL--SVQDKIGPGPDS 123 (139)
Q Consensus 74 l~C~~~~~p~~~~~~--~~~~~---------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~ 123 (139)
|.|.+.+.|.+.+.| |+... ..+.+.|..+-..|.|.| .+.|.+|+.+..
T Consensus 348 ~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~ 410 (1381)
T KOG4221|consen 348 FECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAA 410 (1381)
T ss_pred EeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCcccccch
Confidence 999999999999988 44431 223488888889999999 788888888765
No 8
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.51 E-value=5.3e-13 Score=93.38 Aligned_cols=119 Identities=13% Similarity=0.127 Sum_probs=84.8
Q ss_pred eEEEECCEEe----ee-cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC--CeEEecCceEeeCCCCeEEE
Q psy12134 2 LVIFFSKIEL----LY-NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP--PEVSVEKQWIHTAPDMRAEI 74 (139)
Q Consensus 2 ~~W~~~~~~~----~~-~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~--p~~~~~~~~~~~~~g~~~~l 74 (139)
++|+|++... .. .+..|.|.++..+|+|.|+|.+.|..+. .+..+.|.|... +.+........+.+|..+.+
T Consensus 63 i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~-~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i 141 (326)
T PHA02785 63 ILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYC-DMMSLNLTIVSVSESNIDLISYPQIVNERSTGEM 141 (326)
T ss_pred EEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCcc-eEEEEEEEEEecCCCccceeeccceecccCcEEE
Confidence 7899987532 22 2345889999999999999999998876 456777777543 32322222334568999999
Q ss_pred EEE-----eeeCCCcEEEEcCee---------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134 75 ICN-----VYANPPAKRFDEGTR---------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP 121 (139)
Q Consensus 75 ~C~-----~~~~p~~~~~~~~~~---------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~ 121 (139)
.|. ..+.|++.+.|.+.. ...+.|.|.++..+|.|.| .+.|..|...
T Consensus 142 ~C~~~~~~~~~~~~~~i~W~k~~~~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~ 204 (326)
T PHA02785 142 VCPNINAFIASNVNADIIWSGHRRLRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKT 204 (326)
T ss_pred ECCChhhcccCCCCceEEEccCCccCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEE
Confidence 997 245788888883321 1246899999999999999 6777766543
No 9
>KOG4194|consensus
Probab=99.49 E-value=2.8e-13 Score=98.90 Aligned_cols=117 Identities=15% Similarity=0.148 Sum_probs=93.8
Q ss_pred eEEEECCEE-ee----------ecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCC
Q psy12134 2 LVIFFSKIE-LL----------YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDM 70 (139)
Q Consensus 2 ~~W~~~~~~-~~----------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~ 70 (139)
+.|-|+|+. .+ ..+..+.|.+++.+|+|.|+|.|.|..|. .++.++|.|.+.|.+..+..+..+..|+
T Consensus 644 IawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~-isanAtL~V~e~p~f~~PL~~~~V~~ge 722 (873)
T KOG4194|consen 644 IAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQ-ISANATLTVLETPSFSIPLEDQLVVVGE 722 (873)
T ss_pred eeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccc-eeeceEEEEecCCcccccccceEEEecc
Confidence 568888775 21 13467889999999999999999999999 6999999999999998888888888999
Q ss_pred eEEEEEEeeeCCC-cEEEEcCee----------e--ecceEEEEecCCCCceeE--EEEcccCC
Q psy12134 71 RAEIICNVYANPP-AKRFDEGTR----------F--DEGTVTAKVLQPFSERTL--SVQDKIGP 119 (139)
Q Consensus 71 ~~~l~C~~~~~p~-~~~~~~~~~----------~--~~~~l~i~~~~~~d~g~y--~~~n~~g~ 119 (139)
++.++|.+.+.|+ |...|.+.. . .+..+.+.....+|.|.| ...|.+|.
T Consensus 723 t~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~ 786 (873)
T KOG4194|consen 723 TLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGT 786 (873)
T ss_pred eEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccc
Confidence 9999999999887 777773322 1 223577888889999999 44455544
No 10
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.41 E-value=1.1e-12 Score=74.34 Aligned_cols=53 Identities=23% Similarity=0.337 Sum_probs=46.5
Q ss_pred eEEEECCEEeee--------------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134 2 LVIFFSKIELLY--------------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55 (139)
Q Consensus 2 ~~W~~~~~~~~~--------------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p 55 (139)
++|+++|.++.. ..+.|.|.+++..|+|+|+|.|+|..+. .+..+.|.|..+|
T Consensus 19 ~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~-~~a~a~L~V~~pP 85 (85)
T cd05853 19 FTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDK-LSAAADLIVRGPP 85 (85)
T ss_pred EEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCc-eEEEEEEEEecCC
Confidence 789999988852 1257999999999999999999999988 6899999999876
No 11
>KOG4221|consensus
Probab=99.39 E-value=1.4e-11 Score=95.50 Aligned_cols=114 Identities=12% Similarity=0.147 Sum_probs=92.0
Q ss_pred eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCe------EEecCceEeeCC
Q psy12134 2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE------VSVEKQWIHTAP 68 (139)
Q Consensus 2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~------~~~~~~~~~~~~ 68 (139)
+.|.+++.++.. .++.|.|.+++..|.|.|+|.+.+......+..+.|+|...|. |...+....+..
T Consensus 172 i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~ 251 (1381)
T KOG4221|consen 172 IMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVE 251 (1381)
T ss_pred eEEecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCcccccc
Confidence 689999886644 3588999999999999999999998866678888999885543 334455667788
Q ss_pred CCeEEEEEEeeeCCCcEEEE--cCeee----------ecceEEEEecCCCCceeE--EEEc
Q psy12134 69 DMRAEIICNVYANPPAKRFD--EGTRF----------DEGTVTAKVLQPFSERTL--SVQD 115 (139)
Q Consensus 69 g~~~~l~C~~~~~p~~~~~~--~~~~~----------~~~~l~i~~~~~~d~g~y--~~~n 115 (139)
|+++.|.|.+.+.|.|.+.| ++... ....|.|.+++..|.|.| .|.|
T Consensus 252 g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn 312 (1381)
T KOG4221|consen 252 GDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATN 312 (1381)
T ss_pred CCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecC
Confidence 99999999999999999999 44331 245788999999999999 4555
No 12
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.36 E-value=3.9e-11 Score=74.30 Aligned_cols=71 Identities=21% Similarity=0.286 Sum_probs=58.6
Q ss_pred eEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeCCCc--EEEE
Q psy12134 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA--KRFD 88 (139)
Q Consensus 17 ~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~~~~ 88 (139)
+|.|.+++..|+|.|.|.+.+..+. ....+.|.|..+|.+...+.......|..+.|.|.+.+.+|+ .+.|
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W 74 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQ-AQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEW 74 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcc-eeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEE
Confidence 6899999999999999999988777 588899999999988765544344468899999999997543 6788
No 13
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.32 E-value=1.3e-11 Score=66.95 Aligned_cols=49 Identities=18% Similarity=0.189 Sum_probs=41.0
Q ss_pred eEEEECCEEeee--cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLY--NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|+|+|.++.. ..+.|.|.++..+|+|.|+|.|+|..|. .+..+.+.+
T Consensus 15 v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~-~~~~~~~~l 65 (67)
T cd05863 15 FQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNSAAG-LEKRISLEL 65 (67)
T ss_pred EEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEEECCcc-EEEEEEEEE
Confidence 789999988854 3468999999999999999999999987 466666554
No 14
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.31 E-value=1.5e-11 Score=69.88 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=45.0
Q ss_pred eEEEECCEEeee--------------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134 2 LVIFFSKIELLY--------------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55 (139)
Q Consensus 2 ~~W~~~~~~~~~--------------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p 55 (139)
++|++++.++.. ..+.|.|.+++..|+|.|+|.|.|..|. .+..+.|.|..+|
T Consensus 19 v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~-~~~~~~L~V~~~P 85 (85)
T cd05854 19 FTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDS-ASASATLVVRGPP 85 (85)
T ss_pred EEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCC-EEEEEEEEEECCC
Confidence 689999877532 1367999999999999999999999998 6889999998765
No 15
>KOG4222|consensus
Probab=99.29 E-value=1e-11 Score=95.66 Aligned_cols=131 Identities=22% Similarity=0.249 Sum_probs=102.0
Q ss_pred eEEEECCEEeeec-------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEE
Q psy12134 2 LVIFFSKIELLYN-------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEI 74 (139)
Q Consensus 2 ~~W~~~~~~~~~~-------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l 74 (139)
++|.+++..+... ..+|.|.+++..|.|.|.|.+.|.+|. .+....|.|+.+|.+..-+....+..|-.++|
T Consensus 257 Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~-l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~ 335 (1281)
T KOG4222|consen 257 VRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGG-LEASATLTVQAPPSFGKKPRDQKVALGGTVTF 335 (1281)
T ss_pred eeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccccc-cccccceEEecCcccccccCccccccCceEEe
Confidence 6788877665432 368899999999999999999999998 69999999999999987777778888999999
Q ss_pred EEEeeeCCCcEEEEcCee-------------------eecceEEEEecCCCCceeEEE--EcccCCCCCC-CCcceeeee
Q psy12134 75 ICNVYANPPAKRFDEGTR-------------------FDEGTVTAKVLQPFSERTLSV--QDKIGPGPDS-NLRPSAYMA 132 (139)
Q Consensus 75 ~C~~~~~p~~~~~~~~~~-------------------~~~~~l~i~~~~~~d~g~y~~--~n~~g~~~~~-~~~~~~~~~ 132 (139)
.|.+.++|+|.+||.... ...+.|.|.+++..|.|.|.| .+..|+...- .++....++
T Consensus 336 pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~ 415 (1281)
T KOG4222|consen 336 PCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLT 415 (1281)
T ss_pred eeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeec
Confidence 999999999999993221 123479999999999999933 5555554432 334444444
Q ss_pred C
Q psy12134 133 D 133 (139)
Q Consensus 133 ~ 133 (139)
+
T Consensus 416 ~ 416 (1281)
T KOG4222|consen 416 D 416 (1281)
T ss_pred c
Confidence 4
No 16
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.28 E-value=3.3e-11 Score=70.32 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=46.5
Q ss_pred CeEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134 1 MLVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55 (139)
Q Consensus 1 ~~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p 55 (139)
.+.|+|++.++... .+.|.|.++..+|+|.|+|.+.|..|. ....+.|.|...|
T Consensus 31 ~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~-~~~~~~l~V~~~P 94 (98)
T cd05762 31 TCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGS-RQAQVNLTVVDKP 94 (98)
T ss_pred ceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCc-eeEEEEEEEecCC
Confidence 37899999887421 377999999999999999999999999 5789999998766
No 17
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.27 E-value=3.1e-11 Score=68.57 Aligned_cols=53 Identities=25% Similarity=0.361 Sum_probs=45.2
Q ss_pred eEEEECCEEeee--------------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134 2 LVIFFSKIELLY--------------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55 (139)
Q Consensus 2 ~~W~~~~~~~~~--------------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p 55 (139)
++|++++.++.. ..+.|.|.+++..|+|.|+|.+.|..|. .+..+.|.|..+|
T Consensus 19 ~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~pP 85 (85)
T cd04970 19 FTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDS-LSASADLIVRGPP 85 (85)
T ss_pred EEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCc-EEEEEEEEEECCC
Confidence 589999887642 2367999999999999999999999988 5889999998876
No 18
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.20 E-value=9.1e-11 Score=65.08 Aligned_cols=49 Identities=24% Similarity=0.243 Sum_probs=40.0
Q ss_pred eEEEECCEEeeec---------C---CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLYN---------R---ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~~---------~---~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|+|++..+... . ..|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 15 i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~-~~~~a~L~V 75 (75)
T cd05892 15 IFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGV-ATCHARLDV 75 (75)
T ss_pred EEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCe-EEEEEEEeC
Confidence 7899999876421 1 26999999999999999999999998 466777654
No 19
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.20 E-value=8e-11 Score=64.42 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=38.7
Q ss_pred eEEEECCEEeeec-----CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEE
Q psy12134 2 LVIFFSKIELLYN-----RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN 50 (139)
Q Consensus 2 ~~W~~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~ 50 (139)
+.|+|++.++... +..|.|.++..+|+|.|+|.+.|..|.. +...++.
T Consensus 15 v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~-~~~~t~~ 67 (70)
T cd05864 15 VKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKE-EQRHTFQ 67 (70)
T ss_pred EEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCce-eeEEEEE
Confidence 7899999887542 3679999999999999999999999873 4444443
No 20
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.20 E-value=7.6e-11 Score=69.12 Aligned_cols=51 Identities=24% Similarity=0.271 Sum_probs=42.3
Q ss_pred CeEEEECCEEeeec----------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134 1 MLVIFFSKIELLYN----------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52 (139)
Q Consensus 1 ~~~W~~~~~~~~~~----------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~ 52 (139)
.+.|+|+|.++... .+.|.|.+++.+|+|.|+|.|.|..|. .+.++.|.|.
T Consensus 34 ~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~-~~~t~~l~V~ 100 (101)
T cd05859 34 QIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV-KSYTFALQIQ 100 (101)
T ss_pred ceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce-EEEEEEEEEE
Confidence 37899999986422 257999999999999999999999988 5777777764
No 21
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.19 E-value=1.3e-10 Score=64.18 Aligned_cols=49 Identities=24% Similarity=0.311 Sum_probs=40.3
Q ss_pred eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|+|++..+.. ..+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 18 v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~~ 73 (73)
T cd05852 18 FSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGK-ANSTGVLSV 73 (73)
T ss_pred EEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCc-eeEEEEEEC
Confidence 789999876532 3478999999999999999999999988 466666654
No 22
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.18 E-value=1.2e-10 Score=65.58 Aligned_cols=48 Identities=27% Similarity=0.307 Sum_probs=38.2
Q ss_pred CeEEEECCEEeeec-----------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEE
Q psy12134 1 MLVIFFSKIELLYN-----------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV 49 (139)
Q Consensus 1 ~~~W~~~~~~~~~~-----------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l 49 (139)
.++|+|+|.++... .+.|.|.+++..|+|.|+|.|.|..|. .+..+.+
T Consensus 14 ~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~-~~~~~~~ 78 (81)
T cd04971 14 TLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQ-DSKSISA 78 (81)
T ss_pred cEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCC-eeeEEEe
Confidence 37999999876432 235999999999999999999999988 4555444
No 23
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.18 E-value=1.3e-10 Score=63.75 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=40.1
Q ss_pred eEEEECCEEeee------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLY------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|+|+|.++.. ....|.|.+++.+|+|.|+|.+.|..|. .+..+.+.+
T Consensus 15 v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~-~~~~~~~~~ 69 (71)
T cd04976 15 IQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAK-LEKRLTFTL 69 (71)
T ss_pred EEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCcc-EEEEEEEEE
Confidence 789999987642 3578999999999999999999999887 455555554
No 24
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.18 E-value=1e-10 Score=64.69 Aligned_cols=49 Identities=24% Similarity=0.333 Sum_probs=40.9
Q ss_pred eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
++|+|++..+.. ..+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 19 i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~L~V 74 (74)
T cd05745 19 IAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGS-QRTVAQLTV 74 (74)
T ss_pred EEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCc-eeEEEEEeC
Confidence 789999987643 2468999999999999999999999998 577777654
No 25
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.18 E-value=1.6e-10 Score=66.45 Aligned_cols=50 Identities=32% Similarity=0.436 Sum_probs=42.8
Q ss_pred eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|+|++..+.. ..+.|.|.+++.+|+|.|.|.|.|..|...+..+.|.|
T Consensus 34 i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 34 IWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred EEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 789999887532 24689999999999999999999999987788888876
No 26
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.18 E-value=1.2e-10 Score=64.64 Aligned_cols=49 Identities=24% Similarity=0.152 Sum_probs=40.0
Q ss_pred eEEEECCEEeeec--------C----CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLYN--------R----ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~~--------~----~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
++|+|++.++... . ..|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 15 v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~a~L~V 75 (75)
T cd05893 15 IFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGI-VSCTARLDV 75 (75)
T ss_pred EEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCE-EEEEEEEeC
Confidence 7899998876431 1 15899999999999999999999998 577777764
No 27
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.18 E-value=1.8e-10 Score=63.66 Aligned_cols=49 Identities=22% Similarity=0.170 Sum_probs=40.2
Q ss_pred eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|+|++..+... .+.|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 16 v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 74 (74)
T cd05748 16 VTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGE-KSATINVKV 74 (74)
T ss_pred EEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCcc-EEEEEEEEC
Confidence 7899999876321 367999999999999999999999988 577776654
No 28
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.17 E-value=1.8e-10 Score=65.89 Aligned_cols=53 Identities=19% Similarity=0.200 Sum_probs=43.9
Q ss_pred eEEEECCEEeeec---------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134 2 LVIFFSKIELLYN---------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55 (139)
Q Consensus 2 ~~W~~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p 55 (139)
++|+|++..+... .+.|.|.++..+|+|.|+|.|.|..|. ....+.|.|..+|
T Consensus 18 i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~-~~~~~~L~V~~~P 85 (88)
T cd05735 18 VRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGE-DRGIIQLTVQEPP 85 (88)
T ss_pred EEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCc-ceEEEEEEEeCCC
Confidence 7899998665221 156999999999999999999999998 5888899998765
No 29
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.16 E-value=2.4e-10 Score=63.26 Aligned_cols=50 Identities=20% Similarity=0.292 Sum_probs=42.2
Q ss_pred eEEEECCEEeee---------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLY---------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|+|++.++.. ..+.|.|.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus 15 v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 15 ITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred EEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 789999877642 24689999999999999999999999987777777776
No 30
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.16 E-value=2.2e-10 Score=64.05 Aligned_cols=48 Identities=31% Similarity=0.349 Sum_probs=38.2
Q ss_pred CeEEEECCEEeeec---------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEE
Q psy12134 1 MLVIFFSKIELLYN---------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV 49 (139)
Q Consensus 1 ~~~W~~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l 49 (139)
.++|+|+|.++... .+.|.|.+++.+|+|.|+|.|+|..|. .+..+.+
T Consensus 14 ti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~-~~~~~~~ 76 (79)
T cd05855 14 TLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGE-DEKNVSA 76 (79)
T ss_pred ceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcc-cceEEEe
Confidence 37999999887421 247999999999999999999999988 3555444
No 31
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.14 E-value=3.6e-10 Score=62.84 Aligned_cols=49 Identities=24% Similarity=0.227 Sum_probs=41.1
Q ss_pred eEEEECCEEeee---------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLY---------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
++|+|+|.++.. ..+.|.|.+++.+|+|.|+|.+.|..|. ....+.|.|
T Consensus 18 i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 75 (76)
T cd05867 18 ITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGN-LLANAHVHV 75 (76)
T ss_pred EEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCe-EEEEEEEEE
Confidence 789999987642 2478999999999999999999999988 567777765
No 32
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.14 E-value=2.8e-10 Score=62.43 Aligned_cols=49 Identities=18% Similarity=0.294 Sum_probs=40.0
Q ss_pred eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
++|+|++..+.. ....|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 16 v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~L~V 71 (71)
T cd05723 16 VKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGN-VQASAQLII 71 (71)
T ss_pred EEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCE-EEEEEEEEC
Confidence 789999977532 2457888999999999999999999998 577777654
No 33
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.13 E-value=2.7e-10 Score=62.53 Aligned_cols=49 Identities=29% Similarity=0.308 Sum_probs=40.7
Q ss_pred eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|+|++..+.. ....|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 15 v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 70 (71)
T cd05876 15 VHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGS-ARHHYTVTV 70 (71)
T ss_pred EEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCe-EEEEEEEEE
Confidence 789999865532 3478999999999999999999999998 577777766
No 34
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.12 E-value=3.8e-10 Score=62.59 Aligned_cols=49 Identities=27% Similarity=0.225 Sum_probs=39.8
Q ss_pred eEEEECCEEeeec--------C----CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLYN--------R----ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~~--------~----~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
++|+|++.++... . ..|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus 15 v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~v 75 (75)
T cd05744 15 IFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGV-VSCNARLDV 75 (75)
T ss_pred EEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCc-EEEEEEEeC
Confidence 7899999876421 1 25999999999999999999999998 566676654
No 35
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.12 E-value=3.1e-10 Score=61.87 Aligned_cols=49 Identities=27% Similarity=0.306 Sum_probs=40.0
Q ss_pred eEEEECCEEeee------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLY------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|+|+++.+.. ....|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus 15 v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 69 (69)
T cd05725 15 VLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGK-IEASASLTV 69 (69)
T ss_pred EEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCc-EEEEEEEEC
Confidence 789998765432 3578999999999999999999999988 466666654
No 36
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.12 E-value=3.8e-10 Score=64.55 Aligned_cols=69 Identities=14% Similarity=0.119 Sum_probs=55.6
Q ss_pred CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCee--------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134 54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTR--------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP 121 (139)
Q Consensus 54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~--------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~ 121 (139)
+|.+...+....+..|+.+.|.|.+.|.|.|.+.| ++.. ..++.|.|.++..+|.|.| .|.|.+|+..
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 80 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKDK 80 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCceE
Confidence 35666666777888999999999999999999988 2221 2345799999999999999 8899999765
Q ss_pred C
Q psy12134 122 D 122 (139)
Q Consensus 122 ~ 122 (139)
.
T Consensus 81 ~ 81 (88)
T cd05851 81 H 81 (88)
T ss_pred E
Confidence 3
No 37
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.12 E-value=3e-10 Score=66.55 Aligned_cols=50 Identities=26% Similarity=0.251 Sum_probs=42.0
Q ss_pred eEEEECCEEeeec---------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134 2 LVIFFSKIELLYN---------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52 (139)
Q Consensus 2 ~~W~~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~ 52 (139)
+.|+|+|.++... .+.|.|.++.++|+|.|+|.|.|..|. .+..+.|.|.
T Consensus 36 v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~-~~~t~~L~V~ 100 (101)
T cd04975 36 INWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS-KSLTFELYVN 100 (101)
T ss_pred cEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc-EEEEEEEEEE
Confidence 7899999876421 256999999999999999999999998 5788888775
No 38
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.12 E-value=4e-10 Score=62.10 Aligned_cols=49 Identities=24% Similarity=0.234 Sum_probs=40.6
Q ss_pred eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
++|+|++..+.. ....|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus 18 v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 73 (73)
T cd04969 18 ISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGK-ANSTGSLSV 73 (73)
T ss_pred EEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCc-eEEEEEEEC
Confidence 789999987632 2467999999999999999999999988 467766654
No 39
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.12 E-value=4.2e-10 Score=64.06 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=40.4
Q ss_pred eEEEECCEEeeec-----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLYN-----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|+|++.++... .+.|.|.++.++|+|.|+|.|.|..|. .+..+.|.|
T Consensus 27 v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~-~~~~~~l~V 86 (86)
T cd05894 27 VTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGE-DHASLFVKV 86 (86)
T ss_pred EEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCc-EEEEEEEEC
Confidence 7899999877431 257999999999999999999999998 566666654
No 40
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.11 E-value=4.5e-10 Score=61.25 Aligned_cols=47 Identities=21% Similarity=0.357 Sum_probs=38.7
Q ss_pred eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEE
Q psy12134 2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV 49 (139)
Q Consensus 2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l 49 (139)
++|+|++.++.. ..+.|.|.++..+|+|.|+|.+.|..|. .+..+.|
T Consensus 15 i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~L 68 (69)
T cd05746 15 ITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGY-ASVSMVL 68 (69)
T ss_pred EEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCc-EEEEEEe
Confidence 789999877642 2578999999999999999999999988 4555554
No 41
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.09 E-value=1.2e-09 Score=63.67 Aligned_cols=78 Identities=15% Similarity=0.186 Sum_probs=59.2
Q ss_pred CeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCCCCceeE--EEEcccC
Q psy12134 55 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTL--SVQDKIG 118 (139)
Q Consensus 55 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y--~~~n~~g 118 (139)
|.|...+....+..|+.+.|.|.+.|.|++.+.| ++..+ ....|.|..+..+|.|.| .+.|.+|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G 80 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG 80 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence 3455556667788999999999999999999988 33321 235689999999999999 8999999
Q ss_pred CCCCCCCcceeeeeCCC
Q psy12134 119 PGPDSNLRPSAYMADAP 135 (139)
Q Consensus 119 ~~~~~~~~~~~~~~~~~ 135 (139)
.... +..+.+-+.|
T Consensus 81 ~~~~---~~~l~V~~~P 94 (98)
T cd05762 81 SRQA---QVNLTVVDKP 94 (98)
T ss_pred ceeE---EEEEEEecCC
Confidence 8765 3444554444
No 42
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.09 E-value=8.5e-10 Score=61.35 Aligned_cols=50 Identities=24% Similarity=0.398 Sum_probs=41.8
Q ss_pred eEEEECCEEeee---------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134 2 LVIFFSKIELLY---------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52 (139)
Q Consensus 2 ~~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~ 52 (139)
++|+|+|.++.. .+..|.|.+++..|+|.|+|.|.|..|. ....+.|.|+
T Consensus 18 i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~v~ 76 (76)
T cd05868 18 ISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGY-LLANAFVNVL 76 (76)
T ss_pred EEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCE-EEEEEEEEeC
Confidence 789999987632 2357999999999999999999999998 5788887763
No 43
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.08 E-value=8.1e-10 Score=61.57 Aligned_cols=52 Identities=29% Similarity=0.415 Sum_probs=40.5
Q ss_pred CeEEEECCEEeeec---------CCeEEEcccCCCCCEEEEEEEEcCCCCce-eeeEEEEEe
Q psy12134 1 MLVIFFSKIELLYN---------RESLDLDRVTLKLAGLYQCIASNNIGEST-SKNFIVNVI 52 (139)
Q Consensus 1 ~~~W~~~~~~~~~~---------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~-s~~~~l~v~ 52 (139)
.+.|+|+|.++... .+.|.|.+++.+|+|.|.|.+.|..|... +..++|.|.
T Consensus 14 ~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 14 TYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred cEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 37899999876332 35799999999999999999999998742 355666553
No 44
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.07 E-value=9.5e-10 Score=60.91 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=40.0
Q ss_pred eEEEECCEEee-----------ecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELL-----------YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~-----------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
++|+|++.... ..+..|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 15 v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~-~~~~~~l~V 74 (75)
T cd05763 15 IAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGS-ISANATLTV 74 (75)
T ss_pred EEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCE-EEeeEEEEE
Confidence 78999875311 12468999999999999999999999988 577888776
No 45
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.07 E-value=6.5e-10 Score=63.56 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=40.4
Q ss_pred eEEEECCEEeee------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLY------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
++|+|++.++.. .+..|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 33 v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~V 87 (88)
T cd05851 33 IRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGK-DKHQARVYV 87 (88)
T ss_pred EEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCc-eEEEEEEEE
Confidence 789998765532 3468999999999999999999999998 577777766
No 46
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.06 E-value=7.6e-10 Score=60.50 Aligned_cols=49 Identities=29% Similarity=0.379 Sum_probs=40.2
Q ss_pred eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|+|+++.+.. ....|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 15 v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 70 (71)
T cd05731 15 ISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGS-ARHTISVTV 70 (71)
T ss_pred EEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCce-EEEEEEEEE
Confidence 789999876532 2368999999999999999999999987 467776665
No 47
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.06 E-value=1.1e-09 Score=60.65 Aligned_cols=49 Identities=27% Similarity=0.280 Sum_probs=41.3
Q ss_pred eEEEECCEEeee---------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLY---------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|++++..+.. ....|.|.+++.+|+|.|+|.|.|..|. ....+.|.|
T Consensus 18 i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~V 75 (76)
T cd04978 18 ITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGY-LLANAFVHV 75 (76)
T ss_pred EEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCe-EEEeEEEEE
Confidence 789999886632 2478999999999999999999999988 577777776
No 48
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.05 E-value=1.6e-09 Score=62.68 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=42.0
Q ss_pred eEEEECCEEeee---------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134 2 LVIFFSKIELLY---------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52 (139)
Q Consensus 2 ~~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~ 52 (139)
+.|++++..+.. ..+.|.|.+++.+|+|.|+|.|.|..|. ....+.|.|.
T Consensus 35 v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~L~V~ 93 (95)
T cd05730 35 MTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGE-QEAEIHLKVF 93 (95)
T ss_pred EEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCe-EEEEEEEEEE
Confidence 789999876532 2357999999999999999999999998 5788888775
No 49
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.05 E-value=1e-09 Score=62.20 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=40.9
Q ss_pred eEEEECCEEeee--------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLY--------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|+|++..+.. ..+.|.|.+++.+|+|.|+|.+.|..|...+..+.|.|
T Consensus 29 i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~V 86 (86)
T cd05724 29 VSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARLSV 86 (86)
T ss_pred EEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEEC
Confidence 789999877543 24689999999999999999999999886666666653
No 50
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.05 E-value=1.2e-09 Score=61.92 Aligned_cols=49 Identities=20% Similarity=0.326 Sum_probs=40.2
Q ss_pred eEEEECCEEeeec-----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLYN-----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|+|++.++... ...|.|.++..+|+|.|+|.+.|..|. .+..+.|.|
T Consensus 26 i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~v 85 (85)
T cd05857 26 MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYHLDV 85 (85)
T ss_pred EEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCE-EEEEEEEEC
Confidence 7899999876421 246889999999999999999999998 577777764
No 51
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.03 E-value=1.1e-09 Score=63.05 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=38.7
Q ss_pred eEEEECCEEeeec-----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLYN-----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|+|++.++... ...|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus 33 v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~v~v 92 (92)
T cd05737 33 VSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGG-ETVDVTVSV 92 (92)
T ss_pred EEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCc-ceEEEEEeC
Confidence 7899999776321 136999999999999999999999988 455555543
No 52
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.02 E-value=1.8e-09 Score=64.18 Aligned_cols=53 Identities=21% Similarity=0.234 Sum_probs=43.8
Q ss_pred eEEEECCEEeeec---------------CCeEEEcccC-CCCCEEEEEEEEcCCCCceeeeEEEEEecCC
Q psy12134 2 LVIFFSKIELLYN---------------RESLDLDRVT-LKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55 (139)
Q Consensus 2 ~~W~~~~~~~~~~---------------~~~L~i~~v~-~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p 55 (139)
++|+|++..+... .+.|.|.++. .+|.|.|+|.|.|..|. ....+.|.|..+|
T Consensus 40 i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~-~~~~i~L~~~~~p 108 (109)
T cd05773 40 FRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGE-DSLDIQLVSTSRP 108 (109)
T ss_pred EEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCcc-CcEEEEEEecCCC
Confidence 7899998776421 2578999997 58999999999999999 5888999888766
No 53
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.02 E-value=1.8e-09 Score=61.66 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=41.1
Q ss_pred eEEEECCEEeee------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134 2 LVIFFSKIELLY------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52 (139)
Q Consensus 2 ~~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~ 52 (139)
++|+|++..+.. ....|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|+
T Consensus 33 v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~ 88 (88)
T cd04968 33 IKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGK-DTHQGRIYVQ 88 (88)
T ss_pred EEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCc-EEEEEEEEEC
Confidence 789998765432 3578999999999999999999999998 5777777663
No 54
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.02 E-value=1.4e-09 Score=61.79 Aligned_cols=49 Identities=22% Similarity=0.347 Sum_probs=41.0
Q ss_pred eEEEECCEEeee------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLY------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|+|++.++.. ..+.|.|.++..+|+|.|+|.|.|..|. ....+.|.|
T Consensus 31 v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V 85 (85)
T cd05728 31 YRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGT-IYASAELAV 85 (85)
T ss_pred EEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCe-EEEEEEEEC
Confidence 789999987643 3578999999999999999999999988 577776654
No 55
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.01 E-value=1.1e-09 Score=61.32 Aligned_cols=48 Identities=23% Similarity=0.378 Sum_probs=38.0
Q ss_pred eEEEECCEEeee------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEE
Q psy12134 2 LVIFFSKIELLY------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN 50 (139)
Q Consensus 2 ~~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~ 50 (139)
+.|+|+|.++.. .+..|.|.++..+|+|.|+|.+.|..|. ....+.|.
T Consensus 25 v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~-~~~~~~v~ 78 (79)
T cd04973 25 INWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGS-DTTYFSVN 78 (79)
T ss_pred EEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCc-ccEEEEEe
Confidence 789999977643 2467999999999999999999998877 34445444
No 56
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.00 E-value=1.7e-09 Score=62.77 Aligned_cols=50 Identities=22% Similarity=0.371 Sum_probs=38.1
Q ss_pred eEEEE-CCEEeee---------c---CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFF-SKIELLY---------N---RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~-~~~~~~~---------~---~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
++|++ ++..+.. . .+.|.|.+++.+|+|.|+|.|.|..+...++++.|.|
T Consensus 33 i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 33 ISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI 95 (96)
T ss_pred EEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence 78998 6654322 1 1579999999999999999999997433677777765
No 57
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.99 E-value=1.6e-09 Score=59.50 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=32.6
Q ss_pred eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCC
Q psy12134 2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNI 39 (139)
Q Consensus 2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~ 39 (139)
+.|+|++.++.. .+..|.|.+++.+|+|.|+|.++|..
T Consensus 15 v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~ 59 (72)
T cd07702 15 VIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQ 59 (72)
T ss_pred EEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccc
Confidence 789999987642 24589999999999999999999975
No 58
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.98 E-value=1.6e-09 Score=60.80 Aligned_cols=49 Identities=24% Similarity=0.378 Sum_probs=39.5
Q ss_pred eEEEECCEEeeec--------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLYN--------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~~--------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|+|++..+... ...|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus 26 i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~-~~~~~~v~v 82 (82)
T cd05856 26 ITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGE-INATYKVDV 82 (82)
T ss_pred EEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCcc-EEEEEEEeC
Confidence 7899998765321 257999999999999999999999987 566666654
No 59
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.98 E-value=2e-09 Score=59.75 Aligned_cols=40 Identities=23% Similarity=0.450 Sum_probs=34.1
Q ss_pred eEEEECCEEeeec--------------CCeEEEcccCCCCCEEEEEEEEcCCCC
Q psy12134 2 LVIFFSKIELLYN--------------RESLDLDRVTLKLAGLYQCIASNNIGE 41 (139)
Q Consensus 2 ~~W~~~~~~~~~~--------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~ 41 (139)
+.|++++.++... .+.|.|.++..+|+|.|+|.+.|..|.
T Consensus 16 ~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~ 69 (76)
T cd05895 16 FKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGN 69 (76)
T ss_pred eEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCc
Confidence 6899998876421 256999999999999999999999877
No 60
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.98 E-value=1.5e-09 Score=60.64 Aligned_cols=46 Identities=17% Similarity=0.191 Sum_probs=38.6
Q ss_pred eEEEECCEEeeecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|+|++..+......|.|.++ .+|+|.|+|++.|. ..+..+.|.|
T Consensus 33 ~~W~kng~~l~~~~~~l~i~~~-~~dsG~Y~C~a~~~---~~S~~v~l~V 78 (78)
T cd05752 33 TQWYHNGKLLETTTNSYRIRAA-NNDSGEYRCQTQGS---SLSDPVHLEV 78 (78)
T ss_pred EEEEECCEEeeccCCeEEEeec-ccCCEEeEEECCCC---cCCCCEEEeC
Confidence 6899999988777789999999 99999999999875 2466666654
No 61
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.98 E-value=4.5e-09 Score=60.53 Aligned_cols=40 Identities=20% Similarity=0.111 Sum_probs=34.9
Q ss_pred eEEEECCEEeee------cCCeEEEcccCCCCCEEEEEEEEcCCCC
Q psy12134 2 LVIFFSKIELLY------NRESLDLDRVTLKLAGLYQCIASNNIGE 41 (139)
Q Consensus 2 ~~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~ 41 (139)
+.|+|++.++.. .++.|.|.++..+|+|.|+|.+.|..+.
T Consensus 32 i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~ 77 (92)
T cd05757 32 VQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNG 77 (92)
T ss_pred EEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCC
Confidence 789999988754 3478999999999999999999998765
No 62
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.97 E-value=4.5e-09 Score=60.51 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=55.2
Q ss_pred CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCCCCceeE--EEEccc
Q psy12134 54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTL--SVQDKI 117 (139)
Q Consensus 54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y--~~~n~~ 117 (139)
+|.+...+....+..|+.+.|.|.+.+.|.|.+.| ++..+ ....|.|..+..+|.|.| .+.|.+
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~ 82 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSE 82 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCC
Confidence 46666666777889999999999999999999988 33221 124789999999999999 889999
Q ss_pred CCCCC
Q psy12134 118 GPGPD 122 (139)
Q Consensus 118 g~~~~ 122 (139)
|....
T Consensus 83 G~~~~ 87 (92)
T cd05747 83 GKQEA 87 (92)
T ss_pred CCEeE
Confidence 87654
No 63
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.97 E-value=5.6e-09 Score=57.92 Aligned_cols=50 Identities=24% Similarity=0.328 Sum_probs=41.3
Q ss_pred eEEEECCEEeee----------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134 2 LVIFFSKIELLY----------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52 (139)
Q Consensus 2 ~~W~~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~ 52 (139)
+.|+|++..+.. ....|.|.++..+|.|.|+|.+.|..|. ....+.|.|.
T Consensus 15 v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~ 74 (76)
T cd05736 15 LTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGV-DEDISSLFVE 74 (76)
T ss_pred EEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCC-cceEEEEEEE
Confidence 789999887532 1357999999999999999999999988 4777777774
No 64
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.96 E-value=2.5e-09 Score=61.87 Aligned_cols=49 Identities=20% Similarity=0.244 Sum_probs=38.9
Q ss_pred eEEEECCEEeee----------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLY----------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
++|+|++..+.. .+..|.|.++..+|+|.|+|.+.|..|. .+..+.|.|
T Consensus 36 v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~-~~~~~~L~v 94 (94)
T cd05756 36 LTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYC-MKVSISLTV 94 (94)
T ss_pred EEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCcc-EEEEEEEEC
Confidence 789999865321 2468999999999999999999999877 466666654
No 65
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.96 E-value=3.2e-09 Score=61.76 Aligned_cols=49 Identities=31% Similarity=0.399 Sum_probs=38.9
Q ss_pred eEEEECCEEeeec---------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLYN---------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
++|++++..+... .+.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 34 v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~v 97 (97)
T cd05869 34 ITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQ-DSQSMYLEV 97 (97)
T ss_pred EEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCC-eeEEEEEEC
Confidence 7899987654210 147999999999999999999999998 577777654
No 66
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.96 E-value=5.2e-09 Score=59.72 Aligned_cols=68 Identities=12% Similarity=0.048 Sum_probs=53.5
Q ss_pred CeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEEc--Cee--------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 55 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDE--GTR--------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 55 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~--~~~--------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
+.+...+....+.+|+.+.|.|.+.+.|.|.+.|. +.. ...+.|.|..+..+|.|.| .+.|.+|....
T Consensus 2 ~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~ 81 (88)
T cd04968 2 SIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKDTH 81 (88)
T ss_pred CcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcEEE
Confidence 34445556667788999999999999999999882 221 2457899999999999999 88999988643
No 67
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.96 E-value=3.8e-09 Score=60.84 Aligned_cols=50 Identities=14% Similarity=0.403 Sum_probs=38.7
Q ss_pred eEEEEC-CEEeee-------cC---CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFS-KIELLY-------NR---ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~-~~~~~~-------~~---~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|+++ +..+.. .+ ..|.|.++..+|+|.|+|.|.|..|......+.|.+
T Consensus 31 v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 31 IDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI 91 (92)
T ss_pred EEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence 789985 544321 12 379999999999999999999999886667777665
No 68
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.95 E-value=5.2e-09 Score=59.98 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=41.8
Q ss_pred eEEEECCEEee---------------ecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134 2 LVIFFSKIELL---------------YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY 53 (139)
Q Consensus 2 ~~W~~~~~~~~---------------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~ 53 (139)
+.|+|++..+. ...+.|.|.+++.+|+|.|+|.+.|..|. ....+.|.|..
T Consensus 18 v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~ 83 (90)
T cd05726 18 IFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGS-ILTKAYLEVTD 83 (90)
T ss_pred EEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCc-eEEEEEEEEee
Confidence 78999876421 11467999999999999999999999998 57888888875
No 69
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.95 E-value=5.3e-09 Score=60.40 Aligned_cols=49 Identities=22% Similarity=0.274 Sum_probs=39.0
Q ss_pred eEEEECCEEeee-------cCCeEEEcccC-CCCCEEEEEEEEcCCCCceeeeEEEE
Q psy12134 2 LVIFFSKIELLY-------NRESLDLDRVT-LKLAGLYQCIASNNIGESTSKNFIVN 50 (139)
Q Consensus 2 ~~W~~~~~~~~~-------~~~~L~i~~v~-~~d~G~Y~C~~~n~~~~~~s~~~~l~ 50 (139)
++|+|++.++.. .++.|.|.++. .+|+|.|+|.|+|..|...+..++|.
T Consensus 36 i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 92 (93)
T cd05849 36 YKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLS 92 (93)
T ss_pred EEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence 789999987642 24789999885 58999999999999998666666553
No 70
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.95 E-value=6e-09 Score=60.26 Aligned_cols=49 Identities=22% Similarity=0.315 Sum_probs=38.7
Q ss_pred eEEEECCEEeee--------cCCeEEEcccC-CCCCEEEEEEEEcCCCCceeeeEEEE
Q psy12134 2 LVIFFSKIELLY--------NRESLDLDRVT-LKLAGLYQCIASNNIGESTSKNFIVN 50 (139)
Q Consensus 2 ~~W~~~~~~~~~--------~~~~L~i~~v~-~~d~G~Y~C~~~n~~~~~~s~~~~l~ 50 (139)
++|+++|.++.. ..+.|.|.++. ..|+|.|+|.|.|..|...+..+.|.
T Consensus 36 i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 93 (94)
T cd05850 36 YRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANLR 93 (94)
T ss_pred EEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEEe
Confidence 789999987742 24678888765 59999999999999998766666553
No 71
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.94 E-value=3.2e-09 Score=58.65 Aligned_cols=55 Identities=11% Similarity=0.232 Sum_probs=45.9
Q ss_pred CCCeEEEEEEeeeCCCcEEEE--cCee---------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 68 PDMRAEIICNVYANPPAKRFD--EGTR---------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 68 ~g~~~~l~C~~~~~p~~~~~~--~~~~---------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
+|+++.|.|.+.+.|.|.+.| ++.. ...+.|.|..+..+|.|.| .|.|.+|+...
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 68 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRT 68 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeE
Confidence 589999999999999999988 3322 1345799999999999999 89999998664
No 72
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.94 E-value=3.9e-09 Score=58.80 Aligned_cols=48 Identities=23% Similarity=0.326 Sum_probs=37.1
Q ss_pred eEEEECCEEeee----------cCCeEEEcccCC----CCCEEEEEEEEcCCCCceeeeEEE
Q psy12134 2 LVIFFSKIELLY----------NRESLDLDRVTL----KLAGLYQCIASNNIGESTSKNFIV 49 (139)
Q Consensus 2 ~~W~~~~~~~~~----------~~~~L~i~~v~~----~d~G~Y~C~~~n~~~~~~s~~~~l 49 (139)
++|+|++.++.. ..+.|.|.++.. +|+|.|+|.|.|..|...+..+.|
T Consensus 15 v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 15 FSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred EEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 789999887532 247888888753 689999999999999865655554
No 73
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.93 E-value=7.6e-09 Score=59.30 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=39.7
Q ss_pred eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
++|++++..+... ...|.|.++..+|.|.|+|.|.|..|. ....+.|.|
T Consensus 32 v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~-~~~~~~L~v 90 (90)
T cd04972 32 VEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQ-ANVSVQVTV 90 (90)
T ss_pred EEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCc-eeEEEEEeC
Confidence 7899999866321 257999999999999999999999998 567766654
No 74
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.92 E-value=5.5e-09 Score=60.21 Aligned_cols=50 Identities=22% Similarity=0.484 Sum_probs=37.4
Q ss_pred eEEEE-CCEEeee--------c---CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFF-SKIELLY--------N---RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~-~~~~~~~--------~---~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|++ ++..+.. . .+.|+|.+++.+|+|.|+|.|.|..|...++++.|.|
T Consensus 31 i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~~ 92 (92)
T cd04977 31 ISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLKI 92 (92)
T ss_pred EEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEEC
Confidence 78998 4444322 1 1479999999999999999999998665566666653
No 75
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.92 E-value=5.2e-09 Score=60.04 Aligned_cols=35 Identities=37% Similarity=0.586 Sum_probs=31.4
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
..|.|.+++.+|+|.|+|.|.|..|. .+.++.|.|
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~sa~L~V 89 (90)
T cd04974 55 EVLYLRNVSFDDAGEYTCLAGNSIGP-SHHSAWLTV 89 (90)
T ss_pred ceEEEeccccccCcEEEEEeecccCc-ccCCEEEEe
Confidence 47899999999999999999999998 577888876
No 76
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.92 E-value=7e-09 Score=59.99 Aligned_cols=48 Identities=25% Similarity=0.355 Sum_probs=37.8
Q ss_pred eEEEECCEEeee--------cCCeEEEcccC-CCCCEEEEEEEEcCCCCceeeeEEE
Q psy12134 2 LVIFFSKIELLY--------NRESLDLDRVT-LKLAGLYQCIASNNIGESTSKNFIV 49 (139)
Q Consensus 2 ~~W~~~~~~~~~--------~~~~L~i~~v~-~~d~G~Y~C~~~n~~~~~~s~~~~l 49 (139)
++|+|++.++.. .++.|.|.++. .+|+|.|+|.|.|..|...+..+.|
T Consensus 36 i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 36 YRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL 92 (94)
T ss_pred EEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence 789999987642 24678898875 6899999999999999865555544
No 77
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.91 E-value=6.7e-09 Score=59.28 Aligned_cols=49 Identities=31% Similarity=0.440 Sum_probs=40.6
Q ss_pred eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|++++..+... ...|.|.++..+|+|.|+|.+.|..|. ....+.|.|
T Consensus 32 v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~-~~~~~~l~V 90 (90)
T PF07679_consen 32 VTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGE-ATASVNLTV 90 (90)
T ss_dssp EEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEE-EEEEEEEEE
T ss_pred ccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCE-EEEEEEEEC
Confidence 7899999887642 378999999999999999999999776 466666654
No 78
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.91 E-value=4.1e-09 Score=59.57 Aligned_cols=50 Identities=18% Similarity=0.281 Sum_probs=41.7
Q ss_pred eEEEECCEEeeec--CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLYN--RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|+|++..+... ...|.|.+++.+|+|.|+|.+.+..+...|..+.|+|
T Consensus 32 ~~w~k~g~~~~~~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 32 VTYYRDGKAKKYSHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred EEEEECCeEccccCCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence 7899999877443 5789999999999999999999998776677777664
No 79
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.90 E-value=8.9e-09 Score=56.76 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=37.8
Q ss_pred eEEEEC-CEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFS-KIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~-~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|+++ +..+.. ..+.|.|.++..+|+|.|+|.+.|..|. .+..+.|.|
T Consensus 18 v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~v 74 (74)
T cd05764 18 IHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGE-ATATVELHI 74 (74)
T ss_pred EEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCe-EEEEEEEEC
Confidence 789974 443321 3478999999999999999999999988 466666654
No 80
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.90 E-value=2.1e-08 Score=58.37 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=52.2
Q ss_pred CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEEcC----eee-----------------ecceEEEEecCCCCceeE-
Q psy12134 54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDEG----TRF-----------------DEGTVTAKVLQPFSERTL- 111 (139)
Q Consensus 54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~~----~~~-----------------~~~~l~i~~~~~~d~g~y- 111 (139)
+|.+.. +....+.+|+++.|.|.+.+.|.|.+.|.. ..+ ....|.|..+..+|.|.|
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~ 80 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD 80 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence 355543 345677889999999999999999998822 111 124789999999999999
Q ss_pred -EEEcccCCCCC
Q psy12134 112 -SVQDKIGPGPD 122 (139)
Q Consensus 112 -~~~n~~g~~~~ 122 (139)
.|.|.+|....
T Consensus 81 C~A~N~~G~~~~ 92 (98)
T cd05870 81 CEAASRIGGHQK 92 (98)
T ss_pred EEEeccCCccee
Confidence 88999998664
No 81
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.89 E-value=7.9e-09 Score=59.71 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=34.0
Q ss_pred eEEEECCEEeee---------cCCeEEEcccCCCCCEEEEEEEEcCCCC
Q psy12134 2 LVIFFSKIELLY---------NRESLDLDRVTLKLAGLYQCIASNNIGE 41 (139)
Q Consensus 2 ~~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~ 41 (139)
++|||++.++.. ....|.|.++..+|+|.|+|.+.+..+.
T Consensus 32 v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g 80 (95)
T cd05897 32 LQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEG 80 (95)
T ss_pred EEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCC
Confidence 789999988752 2368999999999999999999998654
No 82
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.88 E-value=9.5e-09 Score=59.48 Aligned_cols=49 Identities=31% Similarity=0.384 Sum_probs=38.6
Q ss_pred eEEEECCEEeee---------------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLY---------------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~---------------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|++++..+.. ..+.|.|.+++.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus 33 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~-~~~s~~l~v 96 (96)
T cd05732 33 ITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGG-DQQSMYLEV 96 (96)
T ss_pred EEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCC-cEEEEEEeC
Confidence 789998754321 1257999999999999999999999998 477776654
No 83
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.88 E-value=1.1e-08 Score=56.93 Aligned_cols=48 Identities=23% Similarity=0.362 Sum_probs=36.3
Q ss_pred eEEEECCEEeee----------cCCeEEEcccCC----CCCEEEEEEEEcCCCCceeeeEEE
Q psy12134 2 LVIFFSKIELLY----------NRESLDLDRVTL----KLAGLYQCIASNNIGESTSKNFIV 49 (139)
Q Consensus 2 ~~W~~~~~~~~~----------~~~~L~i~~v~~----~d~G~Y~C~~~n~~~~~~s~~~~l 49 (139)
++|+|++.++.. ..+.|.|..+.. .|.|.|+|.|.|..|...+..+.|
T Consensus 15 i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 15 FSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred EEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 789999887521 247888877764 378999999999999865555554
No 84
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.88 E-value=1.6e-08 Score=56.53 Aligned_cols=37 Identities=32% Similarity=0.552 Sum_probs=32.2
Q ss_pred CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
.+.|.|.++..+|+|.|.|.|.|..|...+..+.|.|
T Consensus 43 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 43 NGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 4789999999999999999999999987677777654
No 85
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.87 E-value=6.1e-09 Score=58.11 Aligned_cols=41 Identities=20% Similarity=0.151 Sum_probs=34.1
Q ss_pred eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCc
Q psy12134 2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGES 42 (139)
Q Consensus 2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~ 42 (139)
+.|++++..+... ...|.|.+++.+|+|.|+|.+.|..|..
T Consensus 18 v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 68 (78)
T cd05743 18 INWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMV 68 (78)
T ss_pred EEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEE
Confidence 7899988765321 2579999999999999999999999874
No 86
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.87 E-value=1.3e-08 Score=58.60 Aligned_cols=47 Identities=13% Similarity=0.336 Sum_probs=37.8
Q ss_pred eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEE
Q psy12134 2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV 49 (139)
Q Consensus 2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l 49 (139)
+.|+|++..+... .+.|.|.++..+|+|.|+|.+.|..|. .+..+.|
T Consensus 35 v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l 91 (92)
T cd05747 35 VTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGK-QEAQFTL 91 (92)
T ss_pred EEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCC-EeEEEEe
Confidence 7899998765321 258999999999999999999999988 4555554
No 87
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.87 E-value=6.6e-09 Score=59.58 Aligned_cols=35 Identities=40% Similarity=0.581 Sum_probs=31.1
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|.|.+++.+|+|.|+|.|.|..|. ....+.|.|
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~a~L~V 89 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGI-SHHSAWLTV 89 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCc-ccceEEEEE
Confidence 47999999999999999999999998 477777776
No 88
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.87 E-value=1.6e-08 Score=58.01 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=49.3
Q ss_pred CceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 61 KQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 61 ~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
+....+..|+.+.|.|.+.|.|.|.++| ++... ....|.|..+..+|.|.| .|.|.+|+...
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~ 84 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANV 84 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeE
Confidence 3344578899999999999999999998 33221 123689999999999999 88999998654
No 89
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.87 E-value=1.1e-08 Score=58.98 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=38.1
Q ss_pred eEEEECCEEeeec--------C---CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLYN--------R---ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~~--------~---~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|++++..+... . ..|.|.+++.+|+|.|+|.+.|..|. ....+.|.|
T Consensus 33 i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~v~~ 92 (92)
T cd05891 33 VIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGG-ETVDVTVSV 92 (92)
T ss_pred EEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCc-eeeEEEEEC
Confidence 6899998765321 1 37999999999999999999999988 455555543
No 90
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.86 E-value=3.2e-08 Score=58.77 Aligned_cols=81 Identities=14% Similarity=0.243 Sum_probs=54.0
Q ss_pred ecCCeEEecCceEee----CCCCeEEEEEEeeeCCCcEEEE--cCeeee-----------------cceEEEEecC-CCC
Q psy12134 52 IYPPEVSVEKQWIHT----APDMRAEIICNVYANPPAKRFD--EGTRFD-----------------EGTVTAKVLQ-PFS 107 (139)
Q Consensus 52 ~~~p~~~~~~~~~~~----~~g~~~~l~C~~~~~p~~~~~~--~~~~~~-----------------~~~l~i~~~~-~~d 107 (139)
.++|.+...+....+ ..|..+.|.|.+.|.|++.++| ++..+. ...|.|..+. .+|
T Consensus 2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D 81 (109)
T cd05773 2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD 81 (109)
T ss_pred ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence 456666544432111 3568999999999999999988 333211 2357888887 589
Q ss_pred ceeE--EEEcccCCCCCCCCcceeeeeCCC
Q psy12134 108 ERTL--SVQDKIGPGPDSNLRPSAYMADAP 135 (139)
Q Consensus 108 ~g~y--~~~n~~g~~~~~~~~~~~~~~~~~ 135 (139)
.|.| .|.|.+|... .+..+.+.+.|
T Consensus 82 ~G~Y~C~A~N~~G~~~---~~i~L~~~~~p 108 (109)
T cd05773 82 YALFTCTAHNSLGEDS---LDIQLVSTSRP 108 (109)
T ss_pred CEEEEEEEEeCCccCc---EEEEEEecCCC
Confidence 9999 8999999863 34444444444
No 91
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.86 E-value=1.7e-08 Score=56.55 Aligned_cols=35 Identities=34% Similarity=0.443 Sum_probs=30.9
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
..|.|.+++.+|+|.|.|.+.|..|. ....+.|.|
T Consensus 47 ~~L~I~~~~~~D~G~Y~C~a~N~~G~-~~~~~~l~v 81 (81)
T cd05765 47 GQLVIYNAQPQDAGLYTCTARNSGGL-LRANFPLSV 81 (81)
T ss_pred cEEEEccCCcccCEEEEEEEecCCce-EEEEEEEeC
Confidence 57999999999999999999999998 577777764
No 92
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.86 E-value=1.5e-08 Score=56.43 Aligned_cols=48 Identities=23% Similarity=0.288 Sum_probs=36.0
Q ss_pred eEEEECCEEee----------ecCCeEEEcccC----CCCCEEEEEEEEcCCCCceeeeEEE
Q psy12134 2 LVIFFSKIELL----------YNRESLDLDRVT----LKLAGLYQCIASNNIGESTSKNFIV 49 (139)
Q Consensus 2 ~~W~~~~~~~~----------~~~~~L~i~~v~----~~d~G~Y~C~~~n~~~~~~s~~~~l 49 (139)
++|+|++.++. ..++.|.|..+. .+|+|.|+|.|.|..|...+..+.|
T Consensus 15 v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05875 15 FQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL 76 (77)
T ss_pred EEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence 78999987542 124788888764 2469999999999999866665554
No 93
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.85 E-value=9.4e-09 Score=56.67 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=45.6
Q ss_pred CCeEEEEEEeeeCCCcEEEE--cCee---------eecceEEEEecCCCCceeE--EEEcccCCCCCC
Q psy12134 69 DMRAEIICNVYANPPAKRFD--EGTR---------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPDS 123 (139)
Q Consensus 69 g~~~~l~C~~~~~p~~~~~~--~~~~---------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~ 123 (139)
|+.+.|.|.+.+.|.|.+.| ++.. ...+.|.|.++..+|.|.| .|.|.+|+...+
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 68 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANST 68 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEE
Confidence 67899999999999999988 2221 2446899999999999999 899999987753
No 94
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.85 E-value=1.1e-08 Score=56.42 Aligned_cols=41 Identities=24% Similarity=0.453 Sum_probs=34.4
Q ss_pred eEEEECCEEeeec-------------CCeEEEcccCCCCCEEEEEEEEcCCCCc
Q psy12134 2 LVIFFSKIELLYN-------------RESLDLDRVTLKLAGLYQCIASNNIGES 42 (139)
Q Consensus 2 ~~W~~~~~~~~~~-------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~ 42 (139)
+.|+|++.++... ...|.|.++..+|+|.|+|.+.|..|..
T Consensus 16 ~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 69 (75)
T cd05750 16 FKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND 69 (75)
T ss_pred EEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCce
Confidence 7899998776421 2579999999999999999999999873
No 95
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.84 E-value=1.7e-08 Score=58.42 Aligned_cols=50 Identities=26% Similarity=0.328 Sum_probs=39.0
Q ss_pred eEEEECCEEeeec---------CCeEEEccc-----CCCCCEEEEEEEEcC-CCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLYN---------RESLDLDRV-----TLKLAGLYQCIASNN-IGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~~---------~~~L~i~~v-----~~~d~G~Y~C~~~n~-~~~~~s~~~~l~v 51 (139)
+.|+|+|..+... ++.|.|.++ +..|+|.|+|.+.|. .|...+..+.|.|
T Consensus 31 i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 31 IEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred EEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence 7899999876422 355777666 588999999999999 8887677777664
No 96
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.83 E-value=6.9e-08 Score=55.80 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=48.1
Q ss_pred CeEEecCceEeeCC---CCeEEEEEEeeeCCCcEEEE--cCeee----------ecceEEEEecC-CCCceeE--EEEcc
Q psy12134 55 PEVSVEKQWIHTAP---DMRAEIICNVYANPPAKRFD--EGTRF----------DEGTVTAKVLQ-PFSERTL--SVQDK 116 (139)
Q Consensus 55 p~~~~~~~~~~~~~---g~~~~l~C~~~~~p~~~~~~--~~~~~----------~~~~l~i~~~~-~~d~g~y--~~~n~ 116 (139)
|.+...++...+.+ |+++.|.|.+.+.|.+.+.| ++..+ ..+.|.|..+. ..|.|.| .|.|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~ 81 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINR 81 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcC
Confidence 44444454444433 46899999999999999988 44332 24567777654 6999999 89999
Q ss_pred cCCCCC
Q psy12134 117 IGPGPD 122 (139)
Q Consensus 117 ~g~~~~ 122 (139)
+|+..+
T Consensus 82 ~G~~~s 87 (94)
T cd05850 82 CGTVVS 87 (94)
T ss_pred cCcEEE
Confidence 997653
No 97
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.83 E-value=6e-08 Score=56.23 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=50.5
Q ss_pred CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee--------------ecceEEEEe-----cCCCCceeE-
Q psy12134 54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF--------------DEGTVTAKV-----LQPFSERTL- 111 (139)
Q Consensus 54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~--------------~~~~l~i~~-----~~~~d~g~y- 111 (139)
+|.+...+....+.+|+++.|.|.+.+.|.|.+.| ++..+ ..+.+.+.. +..+|.|.|
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 46676667777888999999999999999999988 33321 122222222 268899999
Q ss_pred -EEEcccCCCCCC
Q psy12134 112 -SVQDKIGPGPDS 123 (139)
Q Consensus 112 -~~~n~~g~~~~~ 123 (139)
.|.|.+|.....
T Consensus 81 C~a~N~~G~~~s~ 93 (100)
T cd07693 81 CVAHNSLGEAVSR 93 (100)
T ss_pred EEEEccccceecc
Confidence 889999985443
No 98
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.83 E-value=3.5e-08 Score=57.35 Aligned_cols=69 Identities=12% Similarity=0.184 Sum_probs=50.5
Q ss_pred CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-----------------ecceEEEEecCCCCceeE--E
Q psy12134 54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF-----------------DEGTVTAKVLQPFSERTL--S 112 (139)
Q Consensus 54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-----------------~~~~l~i~~~~~~d~g~y--~ 112 (139)
.|.+...+....+..|+.+.|.|.+.|.|.|.+.| ++... ....|.|..+..+|.|.| .
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 35554444444445689999999999999999988 22110 113688999999999999 7
Q ss_pred EEcccCCCCC
Q psy12134 113 VQDKIGPGPD 122 (139)
Q Consensus 113 ~~n~~g~~~~ 122 (139)
|.|.+|....
T Consensus 82 A~N~~G~~~~ 91 (97)
T cd05869 82 ASNTIGQDSQ 91 (97)
T ss_pred EecCCCCeeE
Confidence 8999998754
No 99
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.82 E-value=1.7e-08 Score=58.72 Aligned_cols=35 Identities=31% Similarity=0.600 Sum_probs=30.3
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
..|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 64 ~~L~I~~v~~~D~G~Y~C~A~N~~G~-~~~~~~l~~ 98 (98)
T cd05870 64 SSLHIKDVKLSDSGRYDCEAASRIGG-HQKSMYLDI 98 (98)
T ss_pred eEEEEeeCCcCCCEEEEEEEeccCCc-ceeEEEEeC
Confidence 57999999999999999999999998 466776654
No 100
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.80 E-value=2.7e-08 Score=57.69 Aligned_cols=50 Identities=28% Similarity=0.359 Sum_probs=36.4
Q ss_pred eEEEECCEEeee------------cCCeEEE-----cccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLY------------NRESLDL-----DRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~------------~~~~L~i-----~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|+|++..+.. ..+.+.+ ..++.+|+|.|+|.+.|..|...+..+.|.|
T Consensus 33 i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 33 IQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccceecceEEEEe
Confidence 789999987654 1122222 2236899999999999999987677777766
No 101
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.80 E-value=7.3e-08 Score=55.70 Aligned_cols=68 Identities=15% Similarity=0.114 Sum_probs=48.5
Q ss_pred CeEEecCceEeeC---CCCeEEEEEEeeeCCCcEEEE--cCee----------eecceEEEEecC-CCCceeE--EEEcc
Q psy12134 55 PEVSVEKQWIHTA---PDMRAEIICNVYANPPAKRFD--EGTR----------FDEGTVTAKVLQ-PFSERTL--SVQDK 116 (139)
Q Consensus 55 p~~~~~~~~~~~~---~g~~~~l~C~~~~~p~~~~~~--~~~~----------~~~~~l~i~~~~-~~d~g~y--~~~n~ 116 (139)
|.+...+....+. .|+.+.|.|.+.|.|.|.+.| ++.. ...+.|.|..+. .+|.|.| .|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~ 81 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNS 81 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcC
Confidence 3444444443332 478999999999999999988 3332 134567787774 6999999 89999
Q ss_pred cCCCCC
Q psy12134 117 IGPGPD 122 (139)
Q Consensus 117 ~g~~~~ 122 (139)
+|+..+
T Consensus 82 ~G~~~S 87 (94)
T cd05848 82 IGSILS 87 (94)
T ss_pred CCeEEe
Confidence 997654
No 102
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.79 E-value=3.4e-08 Score=53.83 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=34.5
Q ss_pred eEEEECCEEeeec------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEE
Q psy12134 2 LVIFFSKIELLYN------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV 49 (139)
Q Consensus 2 ~~W~~~~~~~~~~------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l 49 (139)
+.|+|++.++... ...|.|.+++ |+|.|+|.|.|..|. ....+.|
T Consensus 18 v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~-~~~~a~l 68 (69)
T cd05739 18 VKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGM-IEATAQV 68 (69)
T ss_pred EEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCE-EEEEEEE
Confidence 7899999876432 3568888874 799999999999987 4555544
No 103
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=98.79 E-value=2.2e-08 Score=57.85 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=47.0
Q ss_pred EeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-----------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134 64 IHTAPDMRAEIICNVYANPPAKRFD--EGTRF-----------DEGTVTAKVLQPFSERTL--SVQDKIGPGP 121 (139)
Q Consensus 64 ~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-----------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~ 121 (139)
..+..|+++.|.|.+.|.|.|.+.| ++..+ ....|.|..+..+|.|.| .|.|.+|...
T Consensus 13 ~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 85 (95)
T cd05730 13 ATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQE 85 (95)
T ss_pred eEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEE
Confidence 3567899999999999999999988 33221 224699999999999999 8899998754
No 104
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=98.79 E-value=6.1e-08 Score=55.77 Aligned_cols=62 Identities=13% Similarity=0.200 Sum_probs=49.0
Q ss_pred CceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee----------e---cceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 61 KQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF----------D---EGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 61 ~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~----------~---~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
+....+.+|+++.|.|.+.+.|.|.+.| ++..+ . ...|.|.++..+|.|.| .|.|.+|....
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV 86 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence 3345677899999999999999999988 33221 1 12689999999999999 89999997654
No 105
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=98.78 E-value=3.3e-08 Score=56.85 Aligned_cols=61 Identities=8% Similarity=0.088 Sum_probs=48.6
Q ss_pred CceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee---------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 61 KQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF---------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 61 ~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~---------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
.....+.+|+++.|.|.+.+. .|.+.| ++..+ ....|.|..+..+|.|.| .|.|.+|...+
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S 83 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTS 83 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence 344577889999999999999 888888 33321 235799999999999999 88999987654
No 106
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=98.78 E-value=6.5e-08 Score=55.01 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=47.8
Q ss_pred eEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-------------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134 63 WIHTAPDMRAEIICNVYANPPAKRFD--EGTRF-------------DEGTVTAKVLQPFSERTL--SVQDKIGPGP 121 (139)
Q Consensus 63 ~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~ 121 (139)
...+..|+.+.|.|.+.|.|+|.+.| ++..+ ....|.|..+..+|.|.| .|.|.+|...
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~ 79 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDH 79 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEE
Confidence 34567899999999999999999998 22221 124799999999999999 8999999865
No 107
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.78 E-value=2.5e-08 Score=56.56 Aligned_cols=61 Identities=13% Similarity=0.064 Sum_probs=50.2
Q ss_pred CceEeeCCCCeEEEEEEeeeCCCcEEEE--cCee--------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134 61 KQWIHTAPDMRAEIICNVYANPPAKRFD--EGTR--------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP 121 (139)
Q Consensus 61 ~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~--------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~ 121 (139)
+....+..|+.+.|.|.+.+.|.|.+.| ++.. ...+.|.|..+..+|.|.| .|.|.+|...
T Consensus 6 p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~ 78 (85)
T cd05728 6 ISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIY 78 (85)
T ss_pred CCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEE
Confidence 4456778899999999999999999988 3332 2456899999999999999 8899988754
No 108
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.77 E-value=5.1e-08 Score=56.28 Aligned_cols=70 Identities=11% Similarity=0.020 Sum_probs=49.5
Q ss_pred CeEEecCceEeeCC---CCeEEEEEEeeeCCCcEEEE--cCee---------eecceEEEEecC-CCCceeE--EEEccc
Q psy12134 55 PEVSVEKQWIHTAP---DMRAEIICNVYANPPAKRFD--EGTR---------FDEGTVTAKVLQ-PFSERTL--SVQDKI 117 (139)
Q Consensus 55 p~~~~~~~~~~~~~---g~~~~l~C~~~~~p~~~~~~--~~~~---------~~~~~l~i~~~~-~~d~g~y--~~~n~~ 117 (139)
|.+...+....+.+ +..+.|.|.+.|.|.|.+.| ++.. ..++.|.|..+. .+|.|.| .|.|.+
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~ 81 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIY 81 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCc
Confidence 44444444433333 45799999999999999988 3322 234678888874 6899999 899999
Q ss_pred CCCCCCC
Q psy12134 118 GPGPDSN 124 (139)
Q Consensus 118 g~~~~~~ 124 (139)
|...+..
T Consensus 82 G~~~s~~ 88 (93)
T cd05849 82 GKVRSRE 88 (93)
T ss_pred ceEEEcc
Confidence 9876544
No 109
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.77 E-value=4.1e-08 Score=54.43 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=44.0
Q ss_pred CCeEEEEEEeeeCCCcEEEE--cCee-----------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134 69 DMRAEIICNVYANPPAKRFD--EGTR-----------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP 121 (139)
Q Consensus 69 g~~~~l~C~~~~~p~~~~~~--~~~~-----------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~ 121 (139)
|+.+.|.|.+.+.|.|.+.| ++.. ...+.|.|..+..+|.|.| .|.|.+|...
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 68 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLL 68 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEE
Confidence 68899999999999999988 4432 1346899999999999999 8899988754
No 110
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=98.77 E-value=2e-08 Score=54.40 Aligned_cols=50 Identities=16% Similarity=0.124 Sum_probs=41.6
Q ss_pred EEEEEEeeeCCCcEEEE--cCeee----ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134 72 AEIICNVYANPPAKRFD--EGTRF----DEGTVTAKVLQPFSERTL--SVQDKIGPGP 121 (139)
Q Consensus 72 ~~l~C~~~~~p~~~~~~--~~~~~----~~~~l~i~~~~~~d~g~y--~~~n~~g~~~ 121 (139)
+.|.|.+.|.|+|.+.| ++..+ ..+.|.|.++..+|.|.| .|.|.+|...
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~ 58 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNSAAGLE 58 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEEECCccEE
Confidence 46899999999999988 55544 345899999999999999 8899988643
No 111
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.77 E-value=2.5e-08 Score=57.28 Aligned_cols=44 Identities=30% Similarity=0.353 Sum_probs=35.0
Q ss_pred eEEEECCEEeee--------cCCeEEEcccCC-CCCEEEEEEEEcCCCCceee
Q psy12134 2 LVIFFSKIELLY--------NRESLDLDRVTL-KLAGLYQCIASNNIGESTSK 45 (139)
Q Consensus 2 ~~W~~~~~~~~~--------~~~~L~i~~v~~-~d~G~Y~C~~~n~~~~~~s~ 45 (139)
++|+|++..+.. ..+.|.|.++.. +|+|.|+|.+.|..|...+.
T Consensus 36 i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S~ 88 (91)
T cd04967 36 YRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLSR 88 (91)
T ss_pred EEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEec
Confidence 789999987632 236888988874 89999999999999875443
No 112
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.77 E-value=3.5e-08 Score=55.45 Aligned_cols=46 Identities=20% Similarity=0.228 Sum_probs=36.4
Q ss_pred eEEEECCEEeee----cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEE
Q psy12134 2 LVIFFSKIELLY----NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV 49 (139)
Q Consensus 2 ~~W~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l 49 (139)
+.|+|++.++.. ..+.|.|.++ .|+|.|.|.|+|..|...+..++|
T Consensus 31 I~W~k~g~~l~~~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~~ 80 (81)
T cd05749 31 ILWWQGGSPLGDPPAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGTV 80 (81)
T ss_pred EEEEECCEECCCCCCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEEe
Confidence 789999988743 3578999887 478999999999999865555544
No 113
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.77 E-value=4.9e-08 Score=56.66 Aligned_cols=62 Identities=11% Similarity=0.003 Sum_probs=46.6
Q ss_pred cCceEeeCCCCeEEEEEEeeeCCC-cEEEEc---Ceee----------e----cceEEEEecCCCCceeE--EEEccc-C
Q psy12134 60 EKQWIHTAPDMRAEIICNVYANPP-AKRFDE---GTRF----------D----EGTVTAKVLQPFSERTL--SVQDKI-G 118 (139)
Q Consensus 60 ~~~~~~~~~g~~~~l~C~~~~~p~-~~~~~~---~~~~----------~----~~~l~i~~~~~~d~g~y--~~~n~~-g 118 (139)
.+....+..|+++.|.|.+.+.|. |.+.|. +..+ . .+.|.|..+..+|.|.| .|.|.+ |
T Consensus 6 ~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g 85 (96)
T cd05865 6 VPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEG 85 (96)
T ss_pred eCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCC
Confidence 344456778999999999999994 688882 2211 0 14689999999999999 889986 5
Q ss_pred CCC
Q psy12134 119 PGP 121 (139)
Q Consensus 119 ~~~ 121 (139)
...
T Consensus 86 ~~~ 88 (96)
T cd05865 86 ESE 88 (96)
T ss_pred cEE
Confidence 544
No 114
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.77 E-value=6.7e-08 Score=54.68 Aligned_cols=63 Identities=16% Similarity=0.175 Sum_probs=49.3
Q ss_pred CceEeeCCCCeEEEEEEe-eeCCCcEEEE--cCee----------eecceEEEEecCCCCceeE--EEEcccCCCCCC
Q psy12134 61 KQWIHTAPDMRAEIICNV-YANPPAKRFD--EGTR----------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPDS 123 (139)
Q Consensus 61 ~~~~~~~~g~~~~l~C~~-~~~p~~~~~~--~~~~----------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~ 123 (139)
+....+..|+++.|.|.+ .+.|.+.+.| ++.. ...+.|.|..+..+|.|.| .+.|.+|.....
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~ 80 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESA 80 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeee
Confidence 344566789999999998 6888888888 3322 1246899999999999999 889998876544
No 115
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.76 E-value=2.7e-08 Score=56.26 Aligned_cols=35 Identities=31% Similarity=0.491 Sum_probs=30.2
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|.|.+++.+|+|.|+|.+.|..+. .+++..|.|
T Consensus 49 s~L~I~~v~~~DsG~Y~C~a~n~~~~-~~~s~~v~v 83 (84)
T cd05742 49 STLTIPNATLKDSGTYTCAASSGTMD-QKESTKVNI 83 (84)
T ss_pred EEEEECCCChhhCEEEEEEEccCCCc-eEEEEEEEE
Confidence 67999999999999999999999887 466666655
No 116
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=98.76 E-value=4.1e-08 Score=57.53 Aligned_cols=59 Identities=12% Similarity=0.081 Sum_probs=47.3
Q ss_pred eEeeCCCCeEEEEEEeee-CCCcEEEE--cCeee----------e-------cceEEEEecCCCCceeE--EEEcccCCC
Q psy12134 63 WIHTAPDMRAEIICNVYA-NPPAKRFD--EGTRF----------D-------EGTVTAKVLQPFSERTL--SVQDKIGPG 120 (139)
Q Consensus 63 ~~~~~~g~~~~l~C~~~~-~p~~~~~~--~~~~~----------~-------~~~l~i~~~~~~d~g~y--~~~n~~g~~ 120 (139)
...+..|+++.|.|.+.| .|+|.+.| ++..+ . ...|.|..+..+|.|.| .|.|..|..
T Consensus 12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~ 91 (101)
T cd04975 12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91 (101)
T ss_pred eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence 456678999999999999 88888888 33321 1 25689999999999999 899999865
Q ss_pred C
Q psy12134 121 P 121 (139)
Q Consensus 121 ~ 121 (139)
.
T Consensus 92 ~ 92 (101)
T cd04975 92 S 92 (101)
T ss_pred E
Confidence 4
No 117
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.75 E-value=3.8e-08 Score=56.25 Aligned_cols=51 Identities=24% Similarity=0.324 Sum_probs=39.5
Q ss_pred eEEEECCEEeee----------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134 2 LVIFFSKIELLY----------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52 (139)
Q Consensus 2 ~~W~~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~ 52 (139)
+.|+|++..+.. ....|.|.+++.+|+|.|.|.+.+..+.....++.|.|.
T Consensus 27 i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~ 87 (89)
T cd04979 27 VVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVL 87 (89)
T ss_pred EEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEe
Confidence 789999865432 235699999999999999999998765546777777765
No 118
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.75 E-value=5e-08 Score=54.84 Aligned_cols=61 Identities=10% Similarity=0.188 Sum_probs=46.5
Q ss_pred cCceEeeCCCCeEEEEEEeeeCCCc-EEEE--cCeee------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 60 EKQWIHTAPDMRAEIICNVYANPPA-KRFD--EGTRF------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 60 ~~~~~~~~~g~~~~l~C~~~~~p~~-~~~~--~~~~~------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
.++...+..|+++.|.|.+.|.|.| .+.| ++..+ ..+.|.+..+ .|.|.| .|.|.+|....
T Consensus 4 ~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s 75 (81)
T cd05749 4 EPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDPPAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTS 75 (81)
T ss_pred CCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCCCCCCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence 3456778899999999999999999 6888 44432 2346777766 478999 89999996553
No 119
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.75 E-value=5.5e-08 Score=56.25 Aligned_cols=68 Identities=13% Similarity=0.177 Sum_probs=50.6
Q ss_pred CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-----------------ecceEEEEecCCCCceeE--E
Q psy12134 54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF-----------------DEGTVTAKVLQPFSERTL--S 112 (139)
Q Consensus 54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-----------------~~~~l~i~~~~~~d~g~y--~ 112 (139)
+|.+.. .....+.+|+.+.|.|.+.+.|.|.+.| ++... ....|.|..+..+|.|.| .
T Consensus 2 ~P~i~~-~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 2 QPKITY-LENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred Ccccee-cCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 344543 2335667899999999999999999988 22110 123789999999999999 8
Q ss_pred EEcccCCCCC
Q psy12134 113 VQDKIGPGPD 122 (139)
Q Consensus 113 ~~n~~g~~~~ 122 (139)
|.|.+|....
T Consensus 81 a~N~~G~~~~ 90 (96)
T cd05732 81 ASNRIGGDQQ 90 (96)
T ss_pred EEeCCCCcEE
Confidence 8999998653
No 120
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.73 E-value=8e-08 Score=55.31 Aligned_cols=62 Identities=13% Similarity=0.099 Sum_probs=47.7
Q ss_pred ecCceEeeCCCCeEEEEEEeeeCCCcEEEEc---Ceee---------ecc---eEEEEecCCCCceeE--EEEcccCCCC
Q psy12134 59 VEKQWIHTAPDMRAEIICNVYANPPAKRFDE---GTRF---------DEG---TVTAKVLQPFSERTL--SVQDKIGPGP 121 (139)
Q Consensus 59 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~---~~~~---------~~~---~l~i~~~~~~d~g~y--~~~n~~g~~~ 121 (139)
..+....+..|+++.|.|.+.|.|. .+.|. +... ..+ .|.|..+..+|.|.| .|.|..|...
T Consensus 5 ~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 83 (92)
T cd05866 5 ISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQ 83 (92)
T ss_pred EEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEE
Confidence 3344566788999999999999998 67772 3221 122 799999999999999 8899988765
No 121
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.73 E-value=9.7e-08 Score=53.28 Aligned_cols=60 Identities=13% Similarity=0.248 Sum_probs=46.7
Q ss_pred CeEEecCceEeeCCCCeEEEEEEeeeCCC-cEEEE--cCeee--ecceEEEEecCCCCceeEEEEc
Q psy12134 55 PEVSVEKQWIHTAPDMRAEIICNVYANPP-AKRFD--EGTRF--DEGTVTAKVLQPFSERTLSVQD 115 (139)
Q Consensus 55 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~~--~~~~~--~~~~l~i~~~~~~d~g~y~~~n 115 (139)
|.+...+....+.+|++++|.|.+.+.|. ..+.| ++..+ ..+.|.|..+ .+|.|.|.|+.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~~~~l~i~~~-~~dsG~Y~C~a 65 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETTTNSYRIRAA-NNDSGEYRCQT 65 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeeccCCeEEEeec-ccCCEEeEEEC
Confidence 45666677778889999999999999875 45667 56553 5568999999 99999995543
No 122
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.72 E-value=4.4e-08 Score=53.88 Aligned_cols=54 Identities=13% Similarity=0.096 Sum_probs=44.7
Q ss_pred CCeEEEEEEeeeCCCcEEEE--cCee---------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 69 DMRAEIICNVYANPPAKRFD--EGTR---------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 69 g~~~~l~C~~~~~p~~~~~~--~~~~---------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
|+++.|.|.+.+.|.+.+.| ++.. ...+.|.|.++..+|.|.| .+.|.+|+...
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~ 67 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANS 67 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEE
Confidence 67899999999999999988 3222 1346799999999999999 89999998764
No 123
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.71 E-value=1e-07 Score=54.28 Aligned_cols=67 Identities=16% Similarity=0.238 Sum_probs=52.9
Q ss_pred CeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCCCCceeE--EEEcccC
Q psy12134 55 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTL--SVQDKIG 118 (139)
Q Consensus 55 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y--~~~n~~g 118 (139)
|.|...+....+..|+++.|.|.+.+.|.+.+.| ++..+ ....|.|.++..+|.|.| .+.|..|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g 80 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG 80 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence 4566666778889999999999999999999888 43331 234799999999999999 7788766
Q ss_pred CCC
Q psy12134 119 PGP 121 (139)
Q Consensus 119 ~~~ 121 (139)
...
T Consensus 81 ~~~ 83 (90)
T PF07679_consen 81 EAT 83 (90)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 124
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.71 E-value=3.8e-08 Score=56.36 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=43.7
Q ss_pred CCeEEEEEEeeeCCCcEEEE--cCee-----------------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 69 DMRAEIICNVYANPPAKRFD--EGTR-----------------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 69 g~~~~l~C~~~~~p~~~~~~--~~~~-----------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
|+.+.|.|.+.+.|.|.++| ++.. ...+.|.|.++..+|.|.| .+.|.+|+...
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 75 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILT 75 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEE
Confidence 68899999999999999988 2211 1245799999999999999 88999887654
No 125
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.71 E-value=5.4e-08 Score=53.28 Aligned_cols=52 Identities=15% Similarity=0.140 Sum_probs=42.0
Q ss_pred eEEEEEEeeeCCCcEEEE--cCee---------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 71 RAEIICNVYANPPAKRFD--EGTR---------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 71 ~~~l~C~~~~~p~~~~~~--~~~~---------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
++.|.|.+.|.|.|.+.| ++.. ...+.|.+..+..+|.|.| .|.|.+|+...
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~ 65 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQA 65 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEE
Confidence 478999999999999988 3322 2345688889999999999 89999998664
No 126
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.69 E-value=4.5e-08 Score=54.32 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=44.1
Q ss_pred CCeEEEEEEeeeCCCcEEEE--cCeee-----------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 69 DMRAEIICNVYANPPAKRFD--EGTRF-----------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 69 g~~~~l~C~~~~~p~~~~~~--~~~~~-----------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
|+++.|.|.+.|.|+|.+.| ++..+ ..+.|.+..+...|.|.| .|.|.+|....
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~ 69 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLA 69 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEE
Confidence 67899999999999999988 43331 234788889999999999 88999987654
No 127
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.68 E-value=1e-07 Score=53.87 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=46.9
Q ss_pred EeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-------------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 64 IHTAPDMRAEIICNVYANPPAKRFD--EGTRF-------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 64 ~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
..+..|+.+.|.|.+.+.|++.+.| ++..+ ....|.|..+..+|.|.| .+.|.+|+...
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~ 79 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINH 79 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEE
Confidence 4567899999999999999999988 43321 123578888999999999 88999998654
No 128
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=98.67 E-value=9.9e-08 Score=54.67 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=43.9
Q ss_pred CCeEEEEEEeeeCCCcEEEEcC------ee-----------e----------ecceEEEEecCCCCceeE--EEEcccCC
Q psy12134 69 DMRAEIICNVYANPPAKRFDEG------TR-----------F----------DEGTVTAKVLQPFSERTL--SVQDKIGP 119 (139)
Q Consensus 69 g~~~~l~C~~~~~p~~~~~~~~------~~-----------~----------~~~~l~i~~~~~~d~g~y--~~~n~~g~ 119 (139)
|+.+.|.|.+.+.|.|.+.|-+ .. . ....|.|.++..+|+|.| .|.|.+|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 6789999999999999998822 11 0 123688999999999999 89999998
Q ss_pred CCCC
Q psy12134 120 GPDS 123 (139)
Q Consensus 120 ~~~~ 123 (139)
...+
T Consensus 81 ~~~s 84 (90)
T cd04974 81 SHHS 84 (90)
T ss_pred ccCC
Confidence 7654
No 129
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=98.67 E-value=5.8e-08 Score=56.89 Aligned_cols=60 Identities=10% Similarity=-0.037 Sum_probs=48.0
Q ss_pred eEeeCCCCeEEEEEEeeeCCCcEEEE--cCeeee------------------cceEEEEecCCCCceeE--EEEcccCCC
Q psy12134 63 WIHTAPDMRAEIICNVYANPPAKRFD--EGTRFD------------------EGTVTAKVLQPFSERTL--SVQDKIGPG 120 (139)
Q Consensus 63 ~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~~------------------~~~l~i~~~~~~d~g~y--~~~n~~g~~ 120 (139)
...+..|+.+.|.|.+.|.|+|.+.| ++..+. ...|.|.++..+|.|.| .|.|..|+.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 34556789999999999999999988 333311 24699999999999999 899998876
Q ss_pred CC
Q psy12134 121 PD 122 (139)
Q Consensus 121 ~~ 122 (139)
..
T Consensus 92 ~~ 93 (101)
T cd05859 92 SY 93 (101)
T ss_pred EE
Confidence 53
No 130
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.67 E-value=2e-07 Score=54.26 Aligned_cols=68 Identities=15% Similarity=0.304 Sum_probs=49.0
Q ss_pred CCeEEecCceEeeCCCCeEEEEEEeeeCCCc-EEEE--cCeeee------------------cceEEEEecCCCC-ceeE
Q psy12134 54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPA-KRFD--EGTRFD------------------EGTVTAKVLQPFS-ERTL 111 (139)
Q Consensus 54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~~~~--~~~~~~------------------~~~l~i~~~~~~d-~g~y 111 (139)
+|.+.. .....+..|+.+.|.|.+.+.|.| .+.| ++..+. ...|.|..+..+| .|.|
T Consensus 2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 454533 344567889999999999999988 5777 332210 0268888898844 8999
Q ss_pred --EEEcccCCCCC
Q psy12134 112 --SVQDKIGPGPD 122 (139)
Q Consensus 112 --~~~n~~g~~~~ 122 (139)
.|.|.+|....
T Consensus 81 ~C~A~N~~G~~~~ 93 (98)
T cd05758 81 NCTAWNSFGSGTA 93 (98)
T ss_pred EEEEEcCCCcccE
Confidence 88999998664
No 131
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.67 E-value=7e-08 Score=53.33 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=44.4
Q ss_pred CCeEEEEEEeeeCCCcEEEE--cCee-----------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 69 DMRAEIICNVYANPPAKRFD--EGTR-----------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 69 g~~~~l~C~~~~~p~~~~~~--~~~~-----------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
|+.+.|.|.+.+.|.|.+.| ++.. .....|.|..+..+|.|.| .|.|..|....
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~ 69 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLA 69 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEE
Confidence 68899999999999999988 3322 2346899999999999999 78999888653
No 132
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.66 E-value=2.7e-07 Score=52.68 Aligned_cols=64 Identities=11% Similarity=0.063 Sum_probs=47.3
Q ss_pred CCeEEEEEEeeeCCCcEEEE--cCeee---------e--------cceEEEEecCCCCceeE--EEEcccCCCCCCCCcc
Q psy12134 69 DMRAEIICNVYANPPAKRFD--EGTRF---------D--------EGTVTAKVLQPFSERTL--SVQDKIGPGPDSNLRP 127 (139)
Q Consensus 69 g~~~~l~C~~~~~p~~~~~~--~~~~~---------~--------~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~~~~~ 127 (139)
|+.+.|.|.+.+.|++.+.| ++..+ . ...|.|..+..+|.|.| .|.|.+|.... ..
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~---~~ 77 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRG---II 77 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceE---EE
Confidence 68899999999999999999 22211 0 13588888899999999 89999998663 34
Q ss_pred eeeeeCCC
Q psy12134 128 SAYMADAP 135 (139)
Q Consensus 128 ~~~~~~~~ 135 (139)
.+.+.+.|
T Consensus 78 ~L~V~~~P 85 (88)
T cd05735 78 QLTVQEPP 85 (88)
T ss_pred EEEEeCCC
Confidence 44554444
No 133
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=98.65 E-value=4.1e-08 Score=54.39 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=40.9
Q ss_pred EEEEEEeeeCCCcEEEE--cCeee----------ecc----eEEEEecCCCCceeE--EEEcccCCCCCC
Q psy12134 72 AEIICNVYANPPAKRFD--EGTRF----------DEG----TVTAKVLQPFSERTL--SVQDKIGPGPDS 123 (139)
Q Consensus 72 ~~l~C~~~~~p~~~~~~--~~~~~----------~~~----~l~i~~~~~~d~g~y--~~~n~~g~~~~~ 123 (139)
+.|.|.+.|.|.|.+.| ++..+ ..+ .|.|..+..+|.|.| .|.|.+|+...+
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~ 70 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCT 70 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence 47899999999999999 22221 111 588999999999999 899999987643
No 134
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=98.64 E-value=6.5e-08 Score=53.57 Aligned_cols=51 Identities=22% Similarity=0.284 Sum_probs=40.6
Q ss_pred EEEEEEeeeCCCcEEEE--cCeee----------e--cc--eEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 72 AEIICNVYANPPAKRFD--EGTRF----------D--EG--TVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 72 ~~l~C~~~~~p~~~~~~--~~~~~----------~--~~--~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
+.|.|.+.|.|.|.+.| ++..+ . .+ .|.|.++..+|.|.| .|.|.+|....
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~ 69 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATC 69 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEE
Confidence 47899999999999999 33221 1 11 699999999999999 89999997764
No 135
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.64 E-value=1.9e-07 Score=52.87 Aligned_cols=38 Identities=24% Similarity=0.427 Sum_probs=31.2
Q ss_pred CCeEEEcccCCCCCEEEEEEEEcCCC-CceeeeEEEEEe
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNVI 52 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~-~~~s~~~~l~v~ 52 (139)
.+.|.|.+++.+|+|.|.|.+.|..+ ...+.++.|+|+
T Consensus 45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~ 83 (84)
T cd05861 45 RSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVH 83 (84)
T ss_pred EEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence 36799999999999999999998764 235777777775
No 136
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.63 E-value=2e-07 Score=51.71 Aligned_cols=50 Identities=26% Similarity=0.319 Sum_probs=40.6
Q ss_pred eEEEECCEEeeecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|++++..+......+.+..++.+|+|.|+|.+.+..+...+..+.|.|
T Consensus 31 ~~w~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 31 VQWYKNGSPINSSQNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp EEEEETTEEEEEESSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eeeeeeeeeeeeeeeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 68999998887665558889999999999999999976554667776665
No 137
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.63 E-value=1.8e-07 Score=52.56 Aligned_cols=49 Identities=22% Similarity=0.357 Sum_probs=38.4
Q ss_pred eEEEECCEEeeec-----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLYN-----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~~-----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|++++..+... ...|.|.++..+|+|.|.|.+.|..|. .+.++.|.|
T Consensus 26 v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~-~~~~~~l~v 85 (85)
T cd05729 26 ITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGS-INHTYKVDV 85 (85)
T ss_pred EEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCce-EEEEEEEeC
Confidence 7899998765321 146889999999999999999999887 466666653
No 138
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=98.62 E-value=5.7e-08 Score=52.84 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=41.6
Q ss_pred EEEEEEeeeCCCcEEEE--cCee---------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 72 AEIICNVYANPPAKRFD--EGTR---------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 72 ~~l~C~~~~~p~~~~~~--~~~~---------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
+.|.|.+.+.|.|.+.| ++.. ...+.|.|..+..+|.|.| .|.|.+|....
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 64 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASV 64 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEE
Confidence 46899999999999988 3322 1346799999999999999 88999998764
No 139
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.62 E-value=1.2e-07 Score=53.73 Aligned_cols=47 Identities=26% Similarity=0.205 Sum_probs=37.2
Q ss_pred eEEEECCEEeee----cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEE
Q psy12134 2 LVIFFSKIELLY----NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV 49 (139)
Q Consensus 2 ~~W~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l 49 (139)
+.|++++..+.. ..+.|.|.+++.+|+|.|.|.+.|..|. .+..+.|
T Consensus 34 i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~-~~~~~~l 84 (85)
T cd05754 34 LVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLDT-DEATATL 84 (85)
T ss_pred EEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEeccCCe-EeEEEEE
Confidence 789998865422 2578999999999999999999999887 3555443
No 140
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.61 E-value=1.7e-07 Score=49.17 Aligned_cols=39 Identities=26% Similarity=0.439 Sum_probs=32.7
Q ss_pred eEEEECCEEee------ecCCeEEEcccCCCCCEEEEEEEEcCCC
Q psy12134 2 LVIFFSKIELL------YNRESLDLDRVTLKLAGLYQCIASNNIG 40 (139)
Q Consensus 2 ~~W~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~ 40 (139)
+.|++++..+. .....|.|.+++..|+|.|+|.+.|..|
T Consensus 19 v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 19 ITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred EEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 68999887755 2357899999999999999999998754
No 141
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.61 E-value=1.7e-07 Score=53.25 Aligned_cols=37 Identities=32% Similarity=0.389 Sum_probs=30.7
Q ss_pred CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~ 52 (139)
.+.|.|.+++..|+|.|+|.+.|..+. ......|.|+
T Consensus 49 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~-~~~~t~~~V~ 85 (86)
T cd05862 49 SSTLTIENVTLSDLGRYTCTASSGQMI-AKNSTIVIVH 85 (86)
T ss_pred eeEEEEecCCcccCEEEEEEEeecceE-ecccEEEEEe
Confidence 368999999999999999999998776 4666666665
No 142
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.61 E-value=3.1e-07 Score=52.82 Aligned_cols=62 Identities=15% Similarity=0.269 Sum_probs=48.2
Q ss_pred ceEeeCCCCeEEEEEEeeeCCCcEEEE--cCee----------eec---ceEEEEecCCCCceeE--EEEcccCCCCCC
Q psy12134 62 QWIHTAPDMRAEIICNVYANPPAKRFD--EGTR----------FDE---GTVTAKVLQPFSERTL--SVQDKIGPGPDS 123 (139)
Q Consensus 62 ~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~----------~~~---~~l~i~~~~~~d~g~y--~~~n~~g~~~~~ 123 (139)
....+.+|+.+.|.|.+.+.|.|.+.| ++.. ... ..|.|..+..+|.|.| .+.|.+|..+.+
T Consensus 9 ~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 87 (92)
T cd05891 9 DVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVD 87 (92)
T ss_pred CcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence 345677899999999999999998888 2221 111 2688999999999999 889999887643
No 143
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.60 E-value=9.3e-07 Score=50.84 Aligned_cols=60 Identities=13% Similarity=0.060 Sum_probs=45.4
Q ss_pred ecCceEeeCCCCeEEEEEEeeeCCCcEEEEc---Ceee-------------ecceEEEEecCCCCceeE--EEEcccCC
Q psy12134 59 VEKQWIHTAPDMRAEIICNVYANPPAKRFDE---GTRF-------------DEGTVTAKVLQPFSERTL--SVQDKIGP 119 (139)
Q Consensus 59 ~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~---~~~~-------------~~~~l~i~~~~~~d~g~y--~~~n~~g~ 119 (139)
+.+....+..|+++.|.|.+.+.|+ .+.|. +... ....|.|..+..+|.|.| .|.|..|.
T Consensus 5 v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 5 IVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred EecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence 3444567788999999999999875 77882 2221 113699999999999999 78888765
No 144
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.60 E-value=2.2e-07 Score=54.02 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=35.8
Q ss_pred eEEEECCEEeeec----------------CCeEEEcccCCC-CCEEEEEEEEcCCCCceeeeEEE
Q psy12134 2 LVIFFSKIELLYN----------------RESLDLDRVTLK-LAGLYQCIASNNIGESTSKNFIV 49 (139)
Q Consensus 2 ~~W~~~~~~~~~~----------------~~~L~i~~v~~~-d~G~Y~C~~~n~~~~~~s~~~~l 49 (139)
+.|++++..+... .+.|.|.++..+ |.|.|.|.|.|..|.. ...+.|
T Consensus 34 v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~-~~~~~L 97 (98)
T cd05758 34 IVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSG-TAIISL 97 (98)
T ss_pred eEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcc-cEEEEe
Confidence 7899998766421 037999999984 4899999999999883 555444
No 145
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.59 E-value=9.6e-08 Score=52.17 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=41.5
Q ss_pred EEEEEEeeeCCCcEEEE--cCeee-------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 72 AEIICNVYANPPAKRFD--EGTRF-------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 72 ~~l~C~~~~~p~~~~~~--~~~~~-------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
+.|.|.+.|.|+|.+.| ++..+ ....|.|..+..+|.|.| .|.|.+|....
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~ 62 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQ 62 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCceee
Confidence 36899999999999988 44442 234799999999999999 89999987653
No 146
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.59 E-value=3.9e-07 Score=52.63 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=45.9
Q ss_pred cCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeee-----------ecceEEEEec-----CCCCceeE--EEEcc-cC
Q psy12134 60 EKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRF-----------DEGTVTAKVL-----QPFSERTL--SVQDK-IG 118 (139)
Q Consensus 60 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-----------~~~~l~i~~~-----~~~d~g~y--~~~n~-~g 118 (139)
.+....+..|+++.|.|.+.+.|++.+.| ++..+ ..+.+.+..+ ...|.|.| .|.|. +|
T Consensus 5 ~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G 84 (95)
T cd05722 5 EPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLG 84 (95)
T ss_pred CCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccC
Confidence 34445667899999999999999999988 33321 2345666665 57899999 78888 88
Q ss_pred CCC
Q psy12134 119 PGP 121 (139)
Q Consensus 119 ~~~ 121 (139)
...
T Consensus 85 ~~~ 87 (95)
T cd05722 85 SIV 87 (95)
T ss_pred cEE
Confidence 764
No 147
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=98.58 E-value=2.6e-07 Score=51.36 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=40.8
Q ss_pred EEEEEEeeeCCCcEEEE--cCeee-----------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 72 AEIICNVYANPPAKRFD--EGTRF-----------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 72 ~~l~C~~~~~p~~~~~~--~~~~~-----------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
+.|.|.+.+.|.|.+.| ++..+ ..+.|.|..+..+|.|.| .+.|.+|....
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 66 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCS 66 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEee
Confidence 47899999999999988 33331 124799999999999999 89999997543
No 148
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=98.57 E-value=2.8e-07 Score=51.51 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=40.6
Q ss_pred EEEEEeeeCCCcEEEE--cCeee-----------------ecceEEEEecCCCCceeE--EEEcccCCCCCC
Q psy12134 73 EIICNVYANPPAKRFD--EGTRF-----------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPDS 123 (139)
Q Consensus 73 ~l~C~~~~~p~~~~~~--~~~~~-----------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~ 123 (139)
.+.|.+.|+|.|.+.| ++..+ ..+.|.|..+...|.|.| .|.|.+|+...+
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~ 73 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKN 73 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceE
Confidence 4789999999999988 44332 123688889999999999 899999987643
No 149
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.55 E-value=3e-07 Score=51.23 Aligned_cols=54 Identities=13% Similarity=0.043 Sum_probs=43.1
Q ss_pred CCeEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 69 DMRAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 69 g~~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
|+++.|.|.+.+.|.|.+.| ++... ....|.|.++..+|.|.| .|.|.+|....
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 70 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFG 70 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEe
Confidence 68899999999999999988 22211 124789999999999999 78899887653
No 150
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.53 E-value=5.5e-07 Score=49.52 Aligned_cols=53 Identities=17% Similarity=0.287 Sum_probs=43.3
Q ss_pred CCeEEEEEEeeeCCCcEEEEc---Cee---------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134 69 DMRAEIICNVYANPPAKRFDE---GTR---------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP 121 (139)
Q Consensus 69 g~~~~l~C~~~~~p~~~~~~~---~~~---------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~ 121 (139)
|+.+.|.|.+.+.|.|.++|. +.. ...+.|.|..+..+|.|.| .|.|.+|...
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~ 67 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEAT 67 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEE
Confidence 678999999999999999882 222 1346799999999999999 8899988754
No 151
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.53 E-value=1.6e-06 Score=49.70 Aligned_cols=56 Identities=13% Similarity=0.175 Sum_probs=42.8
Q ss_pred CCCeEEEEEEeeeCCCcEEEE--cCeee----------ecceEEEEecC-CCCceeE--EEEcccCCCCCC
Q psy12134 68 PDMRAEIICNVYANPPAKRFD--EGTRF----------DEGTVTAKVLQ-PFSERTL--SVQDKIGPGPDS 123 (139)
Q Consensus 68 ~g~~~~l~C~~~~~p~~~~~~--~~~~~----------~~~~l~i~~~~-~~d~g~y--~~~n~~g~~~~~ 123 (139)
.+.++.|.|.+.+.|++.+.| ++..+ ..+.|.|..+. .+|.|.| .|.|.+|+..+.
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S~ 88 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLSR 88 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEec
Confidence 356799999999999999988 33332 23578887776 5899999 889999976543
No 152
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=98.52 E-value=3.5e-07 Score=50.41 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=39.7
Q ss_pred EEEEEEeeeCCCcEEEE--cCee-----------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134 72 AEIICNVYANPPAKRFD--EGTR-----------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP 121 (139)
Q Consensus 72 ~~l~C~~~~~p~~~~~~--~~~~-----------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~ 121 (139)
+.|.|.+.|.|.|.+.| ++.. ...+.|.|..+..+|.|.| .|.|.+|...
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~ 65 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRY 65 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceE
Confidence 46899999999999988 3322 1245788999999999999 7888888754
No 153
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=98.52 E-value=2.7e-07 Score=50.47 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=40.5
Q ss_pred EEEEEEeeeCCCcEEEE--cCeee--------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134 72 AEIICNVYANPPAKRFD--EGTRF--------DEGTVTAKVLQPFSERTL--SVQDKIGPGP 121 (139)
Q Consensus 72 ~~l~C~~~~~p~~~~~~--~~~~~--------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~ 121 (139)
+.|.|.+.|.|+|.+.| ++..+ ....|.|.++..+|.|.| .+.|.+|...
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~ 62 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLE 62 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEE
Confidence 46899999999999988 44432 346899999999999999 7888887643
No 154
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.52 E-value=1.8e-07 Score=53.23 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=31.6
Q ss_pred eEEEECCEEeeec-------CCeEEEcccCCCCCEEEEEEEEcC
Q psy12134 2 LVIFFSKIELLYN-------RESLDLDRVTLKLAGLYQCIASNN 38 (139)
Q Consensus 2 ~~W~~~~~~~~~~-------~~~L~i~~v~~~d~G~Y~C~~~n~ 38 (139)
++|+++|.++... +..|.|.+++.+|+|.|+|.+.+.
T Consensus 27 i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 27 VVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred EEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEec
Confidence 7899999887443 467999999999999999999865
No 155
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.52 E-value=4.2e-07 Score=52.03 Aligned_cols=55 Identities=13% Similarity=0.177 Sum_probs=43.5
Q ss_pred CCeEEEEEEeeeCCCcEEEEcC------eee-----------e----------cceEEEEecCCCCceeE--EEEcccCC
Q psy12134 69 DMRAEIICNVYANPPAKRFDEG------TRF-----------D----------EGTVTAKVLQPFSERTL--SVQDKIGP 119 (139)
Q Consensus 69 g~~~~l~C~~~~~p~~~~~~~~------~~~-----------~----------~~~l~i~~~~~~d~g~y--~~~n~~g~ 119 (139)
|+++.|.|.+.+.|.|.+.|.. ... . ...|.|..+..+|+|.| .|.|.+|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 6789999999999999998832 100 0 13699999999999999 88999997
Q ss_pred CCCC
Q psy12134 120 GPDS 123 (139)
Q Consensus 120 ~~~~ 123 (139)
...+
T Consensus 81 ~~~~ 84 (90)
T cd05858 81 SHHS 84 (90)
T ss_pred ccce
Confidence 6544
No 156
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.51 E-value=5.5e-07 Score=50.31 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=44.8
Q ss_pred eeCCCCeEEEEEEeeeCCCcEEEE--cCeee----------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134 65 HTAPDMRAEIICNVYANPPAKRFD--EGTRF----------DEGTVTAKVLQPFSERTL--SVQDKIGPGP 121 (139)
Q Consensus 65 ~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~----------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~ 121 (139)
.+..|+++.|.|.+.+.|.|.+.| ++... ....|.|..+..+|.|.| .+.|..|...
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~ 75 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEIN 75 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEE
Confidence 345799999999999999998888 22221 124788999999999999 7888888643
No 157
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=98.51 E-value=3e-07 Score=50.89 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=40.2
Q ss_pred EEEEEEeeeCCCcEEEE--cCeee----------ec----ceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 72 AEIICNVYANPPAKRFD--EGTRF----------DE----GTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 72 ~~l~C~~~~~p~~~~~~--~~~~~----------~~----~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
+.|.|.+.|.|.|.++| ++... .. ..|.|..+..+|.|.| .|.|.+|+...
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 69 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSC 69 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEE
Confidence 46899999999999998 33221 11 1589999999999999 88999998654
No 158
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.51 E-value=7.7e-07 Score=50.43 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=40.7
Q ss_pred CeEEEEEEeeeCCCc--EEEE--cCeee----------------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 70 MRAEIICNVYANPPA--KRFD--EGTRF----------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 70 ~~~~l~C~~~~~p~~--~~~~--~~~~~----------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
+++.|.|.+.+.|.| .+.| ++..+ ..+.|.|.+++..|.|.| .|.|.+|..+.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~ 75 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASA 75 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEE
Confidence 468999999999977 4577 33221 235799999999999999 88999886654
No 159
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.50 E-value=9.5e-07 Score=50.73 Aligned_cols=38 Identities=26% Similarity=0.433 Sum_probs=29.4
Q ss_pred CCeEEEcccCCCCCEEEEEEEEc-CCCCceeeeEEEEEec
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASN-NIGESTSKNFIVNVIY 53 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n-~~~~~~s~~~~l~v~~ 53 (139)
...|.|.+++.+|+|.|+|.+.+ ..+. .-..++|.|..
T Consensus 52 ~~~L~I~~~~~~DsG~Y~C~a~~~~~~~-~~~~~~l~v~~ 90 (91)
T cd05871 52 ERGLLLRSLQRSDAGVYTCTAVEHSFSQ-TLAKYTLHVIE 90 (91)
T ss_pred cCeEEEeeCChhHCEEEEEEEEccCCeE-EEEEEEEEEec
Confidence 46799999999999999999984 5444 34577777653
No 160
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.50 E-value=1e-06 Score=49.15 Aligned_cols=58 Identities=12% Similarity=0.104 Sum_probs=44.3
Q ss_pred eEeeCCCCeEEEEEEeeeCCCcEEEE--cCee--------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134 63 WIHTAPDMRAEIICNVYANPPAKRFD--EGTR--------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP 121 (139)
Q Consensus 63 ~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~--------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~ 121 (139)
...+.+|+.+.|.|.+.+. ++.++| ++.. .....|.|..+..+|.|.| .+.|..|+..
T Consensus 3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~ 72 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDT 72 (79)
T ss_pred cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCccc
Confidence 3466789999999999986 456777 3332 2345789999999999999 6778877644
No 161
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=98.50 E-value=3.5e-07 Score=50.33 Aligned_cols=52 Identities=8% Similarity=0.137 Sum_probs=41.4
Q ss_pred eEEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 71 RAEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 71 ~~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
.+.|.|.+.|.|.|.+.| ++..+ ....|.|.++..+|.|.| .|.|.+|....
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 68 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSA 68 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEE
Confidence 368999999999999988 33221 124688999999999999 89999987654
No 162
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.50 E-value=3e-07 Score=51.35 Aligned_cols=54 Identities=19% Similarity=0.187 Sum_probs=43.1
Q ss_pred CCeEEEEEEeeeCCCcEEEEcCe-----e--------------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 69 DMRAEIICNVYANPPAKRFDEGT-----R--------------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 69 g~~~~l~C~~~~~p~~~~~~~~~-----~--------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
|+++.|.|.+.+.|.|.+.|... . .....|.|..+..+|.|.| .+.|.+|....
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 75 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRA 75 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEE
Confidence 67899999999999999988321 0 0124789999999999999 88999997654
No 163
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.48 E-value=6.4e-07 Score=50.06 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=37.0
Q ss_pred eEEEECCEEeeec------------CCeEEEcccCCCCCEEEEEEEEcCCCCc--eeeeEEEE
Q psy12134 2 LVIFFSKIELLYN------------RESLDLDRVTLKLAGLYQCIASNNIGES--TSKNFIVN 50 (139)
Q Consensus 2 ~~W~~~~~~~~~~------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~--~s~~~~l~ 50 (139)
++|||++.++... .+.|.+.....+|.+.|+|+|.|+.+.. ......|.
T Consensus 17 i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~l~ 79 (80)
T cd05885 17 LRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQYSLD 79 (80)
T ss_pred EEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEEEe
Confidence 7999999987431 1468898888899999999999987542 34455444
No 164
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=98.48 E-value=2.3e-07 Score=50.71 Aligned_cols=51 Identities=8% Similarity=0.049 Sum_probs=40.8
Q ss_pred EEEEEEeeeCCCcEEEE--cCee---------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 72 AEIICNVYANPPAKRFD--EGTR---------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 72 ~~l~C~~~~~p~~~~~~--~~~~---------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
+.|.|.+.|.|.|.+.| ++.. .....|.|..+..+|.|.| .|.|.+|....
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 64 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARH 64 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEE
Confidence 36899999999999998 2211 1345899999999999999 89999997553
No 165
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.47 E-value=1.1e-06 Score=51.72 Aligned_cols=37 Identities=22% Similarity=0.176 Sum_probs=29.1
Q ss_pred CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+++|.|.++++.|+|.|+|++.+.......+.+.|.|
T Consensus 69 ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 69 NGSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred CCcEEEecCCcccCEEEEEEEEeCCccEEEEEEEEEC
Confidence 3789999999999999999999876444455555543
No 166
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.46 E-value=5.3e-07 Score=50.66 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=39.7
Q ss_pred EEEEEeeeCCCcEEEE--cCeeee-------------------cceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 73 EIICNVYANPPAKRFD--EGTRFD-------------------EGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 73 ~l~C~~~~~p~~~~~~--~~~~~~-------------------~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
.+.|.+.|.|+|.+.| ++..+. .+.|.|.++...|.|.| .|.|.+|....
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~ 74 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSK 74 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeee
Confidence 4689999999999988 443210 22588999999999999 89999998764
No 167
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.46 E-value=5.7e-07 Score=48.79 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=40.4
Q ss_pred EEEEEEeeeCCCcEEEEcC--ee--------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134 72 AEIICNVYANPPAKRFDEG--TR--------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP 121 (139)
Q Consensus 72 ~~l~C~~~~~p~~~~~~~~--~~--------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~ 121 (139)
+.|.|.+.+.|+|.+.|.. .. ...+.|.|..+..+|.|.| .|.|.+|...
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 62 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIE 62 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEE
Confidence 4689999999999998822 11 2356899999999999999 8899988754
No 168
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.46 E-value=7.1e-07 Score=49.58 Aligned_cols=54 Identities=22% Similarity=0.314 Sum_probs=40.3
Q ss_pred EEEEEEeeeCCCcEEEE--cCee------------eecceEEEEecCC----CCceeE--EEEcccCCCCCCCC
Q psy12134 72 AEIICNVYANPPAKRFD--EGTR------------FDEGTVTAKVLQP----FSERTL--SVQDKIGPGPDSNL 125 (139)
Q Consensus 72 ~~l~C~~~~~p~~~~~~--~~~~------------~~~~~l~i~~~~~----~d~g~y--~~~n~~g~~~~~~~ 125 (139)
+.|.|.+.|.|+|.+.| ++.. ...+.|.|..+.. +|.|.| .|.|.+|+..+..+
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~ 74 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEI 74 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEcccc
Confidence 46899999999999988 3322 1246788887754 689999 89999998665443
No 169
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.46 E-value=1e-06 Score=49.78 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=39.6
Q ss_pred CeEEEEEEeeeCCCc--EEEE--cCeee----------------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134 70 MRAEIICNVYANPPA--KRFD--EGTRF----------------DEGTVTAKVLQPFSERTL--SVQDKIGPGP 121 (139)
Q Consensus 70 ~~~~l~C~~~~~p~~--~~~~--~~~~~----------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~ 121 (139)
+++.|.|.+.+.|.+ .+.| ++..+ ..+.|.|.+++..|.|.| .|.|.+|...
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 74 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLS 74 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEE
Confidence 468999999999876 4577 33321 235699999999999999 7788887654
No 170
>PHA03376 BARF1; Provisional
Probab=98.46 E-value=3.6e-06 Score=53.94 Aligned_cols=72 Identities=19% Similarity=0.155 Sum_probs=47.2
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD 88 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~ 88 (139)
-.|.|.+++.+|.|.|+|..+..... .-..-.|.+-.+-.+++..........+...+.|...+.|.|...|
T Consensus 87 vsLvI~~l~lSDdGtY~C~fQkge~~-~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~W 158 (221)
T PHA03376 87 FFLVVTAANISHDGNYLCRMKLGETE-VTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQW 158 (221)
T ss_pred EEEEEEeeeecCCceEEEEEEcCCCc-eeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchhee
Confidence 56889999999999999999865432 1222333333333343322111222356778999988999999988
No 171
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.43 E-value=1.7e-06 Score=47.02 Aligned_cols=51 Identities=8% Similarity=0.109 Sum_probs=39.0
Q ss_pred CCeEEEEEEeeeCCCcEEEE--cCeee--------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134 69 DMRAEIICNVYANPPAKRFD--EGTRF--------DEGTVTAKVLQPFSERTL--SVQDKIGPGP 121 (139)
Q Consensus 69 g~~~~l~C~~~~~p~~~~~~--~~~~~--------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~ 121 (139)
|+++.|.|.+.|.|.|.+.| ++..+ ....|.|.++ .|.|.| .|.|.+|...
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~ 63 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNI--YESANYTCVAISSLGMIE 63 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEecc--ccCeeEEEEEEeCCCEEE
Confidence 67899999999999999988 33322 1235777776 478999 8999998754
No 172
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.43 E-value=9.7e-07 Score=49.90 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=47.5
Q ss_pred CceEeeCCCCeEEEEEEeee-CCCcEEEE--cCee------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 61 KQWIHTAPDMRAEIICNVYA-NPPAKRFD--EGTR------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 61 ~~~~~~~~g~~~~l~C~~~~-~p~~~~~~--~~~~------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
+....+..|++++|.|.+.+ .|.+.++| ++.. ...+.|.|..+..+|.|.| .+.|..|....
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~ 80 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEA 80 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEeccCCeEeE
Confidence 44556778999999999875 67778888 2211 2346899999999999999 77888877654
No 173
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.41 E-value=3.6e-07 Score=52.85 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=32.9
Q ss_pred eEEEECCEEeee----------cCCeEEEcccCCCCCEEEEEEEEcCCCC
Q psy12134 2 LVIFFSKIELLY----------NRESLDLDRVTLKLAGLYQCIASNNIGE 41 (139)
Q Consensus 2 ~~W~~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~ 41 (139)
++|++++.++.. .++.|.|.+++.+|+|.|+|.|+|..+.
T Consensus 36 ~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 36 YRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred EEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence 789999765311 2589999999999999999999998644
No 174
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.41 E-value=2.1e-06 Score=49.89 Aligned_cols=68 Identities=18% Similarity=0.277 Sum_probs=49.2
Q ss_pred CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEE-EE--cCeee------------------ecceEEEEecCCCC-ceeE
Q psy12134 54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKR-FD--EGTRF------------------DEGTVTAKVLQPFS-ERTL 111 (139)
Q Consensus 54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~-~~--~~~~~------------------~~~~l~i~~~~~~d-~g~y 111 (139)
+|.+ .......+..|+++.|.|.+.+.|+|.. .| ++..+ ....|.|..+...| .|.|
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y 80 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY 80 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence 4544 5555677789999999999988888754 44 32210 22468888887766 7899
Q ss_pred --EEEcccCCCCC
Q psy12134 112 --SVQDKIGPGPD 122 (139)
Q Consensus 112 --~~~n~~g~~~~ 122 (139)
.|.|.+|+.+.
T Consensus 81 ~C~a~N~~G~d~~ 93 (98)
T cd05898 81 NCTAWNSFGSGTA 93 (98)
T ss_pred EEEEEeCCccceE
Confidence 89999998863
No 175
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.39 E-value=9.1e-07 Score=48.80 Aligned_cols=50 Identities=12% Similarity=0.140 Sum_probs=39.6
Q ss_pred EEEEEEeeeCCCcEEEE--cCee-------------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134 72 AEIICNVYANPPAKRFD--EGTR-------------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP 121 (139)
Q Consensus 72 ~~l~C~~~~~p~~~~~~--~~~~-------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~ 121 (139)
+.|.|.+.|.|.|.+.| ++.. ...+.|.|.++..+|.|.| .|.|.+|...
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~ 67 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSIS 67 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEE
Confidence 36899999999999988 2211 1235789999999999999 8899988754
No 176
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.39 E-value=1.2e-06 Score=51.16 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=34.7
Q ss_pred eEEEECCEEee-------------ecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEE
Q psy12134 2 LVIFFSKIELL-------------YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN 50 (139)
Q Consensus 2 ~~W~~~~~~~~-------------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~ 50 (139)
+.|+|++..+. ..+..|.|..+..+|+|.|+|.+.|.-.. ....+.|+
T Consensus 43 v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C-~~~~i~l~ 103 (104)
T cd05896 43 LMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLRNSTYC-MKVSMSLT 103 (104)
T ss_pred EEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEECCCCcc-eEEEEEEE
Confidence 78999863321 12577899999999999999999987533 34444444
No 177
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.38 E-value=9.3e-07 Score=49.28 Aligned_cols=51 Identities=14% Similarity=0.267 Sum_probs=40.2
Q ss_pred EEEEEEeeeCCCcEEEEcCe---e----------------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 72 AEIICNVYANPPAKRFDEGT---R----------------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 72 ~~l~C~~~~~p~~~~~~~~~---~----------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
+.|.|.+.|.|.|.+.|... . ...+.|.|..+..+|.|.| .|.|.+|....
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s 72 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADAS 72 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCc
Confidence 47899999999999988211 0 1346789999999999999 88999887643
No 178
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.36 E-value=1.5e-06 Score=58.12 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=32.1
Q ss_pred eEEEECCEEeee--------cCCeEEEcccCCCCCEEEEEEEEcCC
Q psy12134 2 LVIFFSKIELLY--------NRESLDLDRVTLKLAGLYQCIASNNI 39 (139)
Q Consensus 2 ~~W~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~n~~ 39 (139)
++|+|++.++.. ..+.|.|.+++.+|+|.|+|.+....
T Consensus 166 I~WyKng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 166 LTWYKNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred EEEEECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 789999988742 23579999999999999999998754
No 179
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=98.35 E-value=5.4e-07 Score=49.01 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=39.6
Q ss_pred EEEEEEeeeCCCcEEEE--cCeee---------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134 72 AEIICNVYANPPAKRFD--EGTRF---------DEGTVTAKVLQPFSERTL--SVQDKIGPGP 121 (139)
Q Consensus 72 ~~l~C~~~~~p~~~~~~--~~~~~---------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~ 121 (139)
+.|.|.+.+.|.|.+.| ++... ....|.|.++..+|.|.| .|.|.+|...
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~ 63 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSAR 63 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEE
Confidence 46899999999999988 22211 235799999999999999 8899988654
No 180
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.33 E-value=1.5e-06 Score=49.06 Aligned_cols=54 Identities=11% Similarity=-0.016 Sum_probs=41.7
Q ss_pred CCeEEEEEEeeeC--CCcEEEEc--Cee-----------------eecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 69 DMRAEIICNVYAN--PPAKRFDE--GTR-----------------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 69 g~~~~l~C~~~~~--p~~~~~~~--~~~-----------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
|+.+.|.|.+.+. |++.+.|. +.. .....|.|..+..+|.|.| .+.|.+|....
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~ 77 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKE 77 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEE
Confidence 6889999999999 77888882 111 1234789999999999999 77888776554
No 181
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.33 E-value=1.3e-06 Score=48.55 Aligned_cols=52 Identities=21% Similarity=0.390 Sum_probs=38.8
Q ss_pred EEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCC----CCceeE--EEEcccCCCCCC
Q psy12134 72 AEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQP----FSERTL--SVQDKIGPGPDS 123 (139)
Q Consensus 72 ~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~----~d~g~y--~~~n~~g~~~~~ 123 (139)
+.|.|.+.|.|.|.+.| ++..+ ..+.|.|..+.. .|.|.| .|.|.+|...+.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 46899999999999988 33321 245677776664 378999 899999976654
No 182
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.32 E-value=5.7e-06 Score=46.64 Aligned_cols=55 Identities=9% Similarity=-0.055 Sum_probs=40.2
Q ss_pred EeeCCCCeEEEEEEeee-CCCcEEEE--cCeee----ecceEEEEecCCCCceeE--EEEcccC
Q psy12134 64 IHTAPDMRAEIICNVYA-NPPAKRFD--EGTRF----DEGTVTAKVLQPFSERTL--SVQDKIG 118 (139)
Q Consensus 64 ~~~~~g~~~~l~C~~~~-~p~~~~~~--~~~~~----~~~~l~i~~~~~~d~g~y--~~~n~~g 118 (139)
..+.+|++++|.|.+.. .+.+.+.| ++... ....|.|..+..+|+|.| .+.+..|
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~ 72 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSHSNSNLSIPQATLSDSGSYHCSGIIGSY 72 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccCCCceEEECccCHHHCEEEEEEEEeCCc
Confidence 35678999999999865 44555666 44432 245799999999999999 5555555
No 183
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.32 E-value=1.8e-06 Score=49.95 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=25.5
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEE
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN 50 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~ 50 (139)
..|.|.+++.+|+|.|+|.+..... .++.+.|.
T Consensus 62 ~~L~I~nV~~~D~G~YtC~~~t~~~--~~~~~~~~ 94 (95)
T cd05882 62 LIISISNVQLSDEGEYTCSIFTMPV--RTAKATVT 94 (95)
T ss_pred EEEEECCCCcccCEEEEEEEEeecc--ccEEEEEE
Confidence 5899999999999999999987332 34555554
No 184
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.27 E-value=2.6e-06 Score=46.79 Aligned_cols=51 Identities=10% Similarity=0.163 Sum_probs=39.7
Q ss_pred EEEEEEeee-CCCcEEEE--cCeee---------------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 72 AEIICNVYA-NPPAKRFD--EGTRF---------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 72 ~~l~C~~~~-~p~~~~~~--~~~~~---------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
+.|.|.+.+ .|++.+.| ++..+ ....|.|..+..+|.|.| .|.|.+|....
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 71 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTV 71 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeE
Confidence 368999999 89999988 33221 124688999999999999 88999998654
No 185
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.25 E-value=6.9e-06 Score=46.10 Aligned_cols=53 Identities=15% Similarity=0.092 Sum_probs=37.2
Q ss_pred eEEEECCEEeeec-------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC
Q psy12134 2 LVIFFSKIELLYN-------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP 54 (139)
Q Consensus 2 ~~W~~~~~~~~~~-------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~ 54 (139)
|+|||++.++... .+.|.|..-..+|...|+|++.|+.-....+...|.|+|.
T Consensus 17 I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y~ 82 (82)
T cd05883 17 IRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQYK 82 (82)
T ss_pred EEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEEC
Confidence 7999999876431 1567774444444458999999977444678888888863
No 186
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.22 E-value=5.7e-06 Score=45.65 Aligned_cols=50 Identities=10% Similarity=0.139 Sum_probs=39.3
Q ss_pred EEEEEEeeeCCCcEEEE--cCeee------------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134 72 AEIICNVYANPPAKRFD--EGTRF------------DEGTVTAKVLQPFSERTL--SVQDKIGPGP 121 (139)
Q Consensus 72 ~~l~C~~~~~p~~~~~~--~~~~~------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~ 121 (139)
+.|.|.+.+.|+|.+.| ++..+ ....|.|..+..+|.|.| .+.|.+|...
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~ 66 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDE 66 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcc
Confidence 36899999999999988 22221 123689999999999999 8899988766
No 187
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.21 E-value=5.4e-06 Score=46.49 Aligned_cols=50 Identities=14% Similarity=0.150 Sum_probs=34.3
Q ss_pred eEEEECCEEeeec---------------CCeEEEcccCCCCCEEEEEEEEcCCC-CceeeeEEEEE
Q psy12134 2 LVIFFSKIELLYN---------------RESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~C~~~n~~~-~~~s~~~~l~v 51 (139)
++|+|++.++... .+.|.|.....+|.|.|+|++.|... .....+++|+|
T Consensus 17 v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~v 82 (82)
T cd05759 17 IIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTLDV 82 (82)
T ss_pred EEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEcC
Confidence 7899999865321 13566766666788899999998762 23566666654
No 188
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.20 E-value=5.9e-06 Score=48.05 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=27.0
Q ss_pred CeEEEcccCCCC-CEEEEEEEEcCCCCceeeeEEE
Q psy12134 16 ESLDLDRVTLKL-AGLYQCIASNNIGESTSKNFIV 49 (139)
Q Consensus 16 ~~L~i~~v~~~d-~G~Y~C~~~n~~~~~~s~~~~l 49 (139)
+.|.|.++.+.| .|.|.|.|.|.+|.. ...++|
T Consensus 64 S~L~I~~~~~~d~~g~Y~C~a~N~~G~d-~~~i~L 97 (98)
T cd05898 64 STLTINNIMEADFQTHYNCTAWNSFGSG-TAIIQL 97 (98)
T ss_pred EEEEECCCccccCCcEEEEEEEeCCccc-eEEEEe
Confidence 789999998766 799999999999883 555444
No 189
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.19 E-value=4.4e-06 Score=47.89 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=36.1
Q ss_pred eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCC--CCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNI--GESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~--~~~~s~~~~l~v 51 (139)
+.|+|+|..... ....|.|.+++.+|+|.|+|+..+.. .+..++.+.|.|
T Consensus 32 f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~~Sd~lel~V 90 (91)
T cd05751 32 YRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSGVALWSEPSDPLELVV 90 (91)
T ss_pred EEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECCCCccCCCCCcEEEEe
Confidence 578888764321 23679999999999999999998863 122466676665
No 190
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.19 E-value=7.1e-06 Score=47.84 Aligned_cols=37 Identities=22% Similarity=0.444 Sum_probs=31.5
Q ss_pred CCeEEEcccCCCCCEEEEEEEEc-CCCCceeeeEEEEEe
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASN-NIGESTSKNFIVNVI 52 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n-~~~~~~s~~~~l~v~ 52 (139)
+.+|.|.+++.+|.|.|.|.+.+ +.|. .+..+.|.|.
T Consensus 62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~-~~~~~~L~V~ 99 (99)
T cd05886 62 DGTISLSRLELEDEGVYICEFATFPTGN-RESQLNLTVY 99 (99)
T ss_pred cceEEEcCCccccCEEEEEEEEeCCCCC-eEEEEEEEEC
Confidence 37899999999999999999999 4565 6888888773
No 191
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.16 E-value=1e-05 Score=44.93 Aligned_cols=52 Identities=17% Similarity=0.142 Sum_probs=38.3
Q ss_pred EEEEEEeeeCCCcEEEE--cCee------------eecceEEEEecCC----CCceeE--EEEcccCCCCCC
Q psy12134 72 AEIICNVYANPPAKRFD--EGTR------------FDEGTVTAKVLQP----FSERTL--SVQDKIGPGPDS 123 (139)
Q Consensus 72 ~~l~C~~~~~p~~~~~~--~~~~------------~~~~~l~i~~~~~----~d~g~y--~~~n~~g~~~~~ 123 (139)
+.|.|.+.|.|.|.+.| ++.. ...+.|.|..+.. +|.|.| .|.|.+|...+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 46899999999999988 3331 1345788877642 468999 899999976543
No 192
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.15 E-value=1.8e-05 Score=45.84 Aligned_cols=54 Identities=13% Similarity=-0.015 Sum_probs=41.3
Q ss_pred eEeeCCCCeEEEEEEeeeCCCcEEEEcC--e--------------ee-------ecceEEEEecCCCCceeEEEEcc
Q psy12134 63 WIHTAPDMRAEIICNVYANPPAKRFDEG--T--------------RF-------DEGTVTAKVLQPFSERTLSVQDK 116 (139)
Q Consensus 63 ~~~~~~g~~~~l~C~~~~~p~~~~~~~~--~--------------~~-------~~~~l~i~~~~~~d~g~y~~~n~ 116 (139)
...+..|+++.|.|.+.+.|.+.+.|.+ . +. ....|.|.++..+|+|.|.|.-.
T Consensus 6 ~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~ 82 (95)
T cd05882 6 DETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIF 82 (95)
T ss_pred cEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEE
Confidence 3566789999999999999999998821 1 11 12478899999999999955443
No 193
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.14 E-value=1.8e-06 Score=45.97 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=26.1
Q ss_pred eEEEECCEEeeec--------CC----eEEEcccCCCCCEEEEEEE
Q psy12134 2 LVIFFSKIELLYN--------RE----SLDLDRVTLKLAGLYQCIA 35 (139)
Q Consensus 2 ~~W~~~~~~~~~~--------~~----~L~i~~v~~~d~G~Y~C~~ 35 (139)
+.|+|++...... .. .|.|.+++.+|+|.|+|.|
T Consensus 19 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 19 VTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred EEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899987643221 11 2999999999999999986
No 194
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=98.13 E-value=2e-05 Score=44.86 Aligned_cols=58 Identities=9% Similarity=-0.057 Sum_probs=43.0
Q ss_pred CceEeeCCCCeEEEEEEeeeCCCcEEEE--cCee---------eecceEEEEecCCCCceeEEEEcccCC
Q psy12134 61 KQWIHTAPDMRAEIICNVYANPPAKRFD--EGTR---------FDEGTVTAKVLQPFSERTLSVQDKIGP 119 (139)
Q Consensus 61 ~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~---------~~~~~l~i~~~~~~d~g~y~~~n~~g~ 119 (139)
+....+..|+++.|.|.+.+ +.+.+.| ++.. ...+.|.|.++..+|.|.|.|...-++
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 34556778999999999865 5677888 4333 234679999999999999966555443
No 195
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.12 E-value=1.2e-05 Score=46.74 Aligned_cols=50 Identities=24% Similarity=0.228 Sum_probs=38.6
Q ss_pred eEEEECCEEeee--------c-------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134 2 LVIFFSKIELLY--------N-------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52 (139)
Q Consensus 2 ~~W~~~~~~~~~--------~-------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~ 52 (139)
+.|.+++..+.. . .+.|.|.++..+|+|.|+|.++|.... .+..+.|.|.
T Consensus 36 ~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~-~s~tF~l~v~ 100 (101)
T cd05860 36 QQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS-ASVTFNVYVN 100 (101)
T ss_pred eEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe-EEEEEEEEEe
Confidence 689988654311 0 178999999999999999999999877 5777777654
No 196
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.11 E-value=6.5e-06 Score=45.13 Aligned_cols=45 Identities=16% Similarity=0.048 Sum_probs=35.0
Q ss_pred EEEEEEeeeCCCcEEEE--cCee---------eecceEEEEecCCCCceeE--EEEcc
Q psy12134 72 AEIICNVYANPPAKRFD--EGTR---------FDEGTVTAKVLQPFSERTL--SVQDK 116 (139)
Q Consensus 72 ~~l~C~~~~~p~~~~~~--~~~~---------~~~~~l~i~~~~~~d~g~y--~~~n~ 116 (139)
+.|.|.+.|.|+|.+.| ++.. .....|.|.++..+|+|.| .+.|.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~ 58 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIK 58 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEcc
Confidence 36899999999999988 3322 1344799999999999999 55554
No 197
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.09 E-value=8.2e-06 Score=47.13 Aligned_cols=58 Identities=7% Similarity=-0.105 Sum_probs=44.8
Q ss_pred EeeCCCCeEEEEEEeee-----CCCcEEEE--cCee------------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134 64 IHTAPDMRAEIICNVYA-----NPPAKRFD--EGTR------------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP 121 (139)
Q Consensus 64 ~~~~~g~~~~l~C~~~~-----~p~~~~~~--~~~~------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~ 121 (139)
..+.+|+.+.|.|.+.+ .|.+.+.| ++.. ..++.|.|..+..+|+|.| .+.|..|..+
T Consensus 9 ~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~ 87 (94)
T cd05756 9 SYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMK 87 (94)
T ss_pred EEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEE
Confidence 35568999999999998 68888888 3221 1245789999999999999 7788777654
No 198
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.08 E-value=3.9e-05 Score=39.86 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=38.7
Q ss_pred CCCeEEEEEEeeeCCCcEEEE--cCee--------eecceEEEEecCCCCceeE--EEEcccC
Q psy12134 68 PDMRAEIICNVYANPPAKRFD--EGTR--------FDEGTVTAKVLQPFSERTL--SVQDKIG 118 (139)
Q Consensus 68 ~g~~~~l~C~~~~~p~~~~~~--~~~~--------~~~~~l~i~~~~~~d~g~y--~~~n~~g 118 (139)
+|+++.|.|.+.+.|.+.+.| ++.. .....|.|..+...|.|.| .+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 478999999998888888888 3322 2345799999999999999 5555543
No 199
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.07 E-value=1.6e-05 Score=46.11 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=31.6
Q ss_pred CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+..|.|.+++.+|+|.|.|.+.+..+......+.|.|
T Consensus 60 ~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 60 DYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI 96 (97)
T ss_pred ceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence 3789999999999999999999887776677777766
No 200
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.07 E-value=2e-05 Score=45.57 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=26.3
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
..|.|.+++.+|+|.|.|.+.+..+. +..+.|.|
T Consensus 62 ~sL~I~~v~~~DsG~Y~C~~~t~~~~--~~~~~l~v 95 (95)
T cd07701 62 LSISISDVSLSDEGQYTCSLFTMPVK--TSKAYLTV 95 (95)
T ss_pred EEEEECcCCcccCEEEEEEeEeecCc--cEEEEEEC
Confidence 57999999999999999999975333 45555543
No 201
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.05 E-value=1.9e-05 Score=45.78 Aligned_cols=37 Identities=27% Similarity=0.464 Sum_probs=30.1
Q ss_pred CCeEEEcccCCCCCEEEEEEEEcC-CCCceeeeEEEEEe
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASNN-IGESTSKNFIVNVI 52 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n~-~~~~~s~~~~l~v~ 52 (139)
+.+|.|.+++.+|+|.|+|++.+. .|. ..+...|.|.
T Consensus 59 d~sl~i~nv~~~D~G~Y~C~v~tfP~G~-~~~~~~l~~~ 96 (96)
T cd05887 59 DATIMLENVGFSDIGVYICKAVTFPLGN-TQSSTTVTVL 96 (96)
T ss_pred ccEEEEeCCCccccEEEEEEEEeCCCCC-eeEEEEEEEC
Confidence 478999999999999999998664 465 6777777763
No 202
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.05 E-value=2.1e-05 Score=44.54 Aligned_cols=35 Identities=20% Similarity=0.308 Sum_probs=28.9
Q ss_pred eEEEECCEEeee------cCCeEEEcccCCCCCEEEEEEEE
Q psy12134 2 LVIFFSKIELLY------NRESLDLDRVTLKLAGLYQCIAS 36 (139)
Q Consensus 2 ~~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~ 36 (139)
+.|++++.++.. ....|.|..++..|+|.|.|.+.
T Consensus 27 v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 27 PVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred EEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEe
Confidence 789999987743 23557789999999999999975
No 203
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.05 E-value=2.3e-05 Score=44.70 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=28.9
Q ss_pred CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEE
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN 50 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~ 50 (139)
+..|.|.+++.+|+|.|.|++....+......+.|.
T Consensus 56 ~~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~ 91 (92)
T cd05741 56 NGSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLR 91 (92)
T ss_pred CceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEE
Confidence 378999999999999999999887655455555554
No 204
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.02 E-value=3.6e-05 Score=43.03 Aligned_cols=56 Identities=18% Similarity=0.247 Sum_probs=43.1
Q ss_pred eeCCCCeEEEEEEeeeCCCcEEEE--cCeee-------------ecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134 65 HTAPDMRAEIICNVYANPPAKRFD--EGTRF-------------DEGTVTAKVLQPFSERTL--SVQDKIGPG 120 (139)
Q Consensus 65 ~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~-------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~ 120 (139)
.+..|+.+.|.|.+.+.|.+.+.| ++... ....|.|..+..+|.|.| .+.|..|..
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~ 77 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSI 77 (85)
T ss_pred EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceE
Confidence 455799999999999999888888 32221 112578889999999999 678887764
No 205
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.02 E-value=2.9e-05 Score=43.98 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=39.7
Q ss_pred CeEEEEEEeee--CCCcEEEE--cCeee----------------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 70 MRAEIICNVYA--NPPAKRFD--EGTRF----------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 70 ~~~~l~C~~~~--~p~~~~~~--~~~~~----------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
+++.|.|.+.+ .+++.+.| ++..+ ..+.|.|.+++..|.|.| .|.|.+++...
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a 75 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSA 75 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEE
Confidence 46889999976 44677788 44332 124799999999999999 78888877653
No 206
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.01 E-value=3.2e-05 Score=44.00 Aligned_cols=53 Identities=9% Similarity=0.089 Sum_probs=39.0
Q ss_pred eEeeCCCCeEEEEEEeeeCCCcEEEE--cCee------------eecceEEEEecCCCCceeE--EEEcc
Q psy12134 63 WIHTAPDMRAEIICNVYANPPAKRFD--EGTR------------FDEGTVTAKVLQPFSERTL--SVQDK 116 (139)
Q Consensus 63 ~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~------------~~~~~l~i~~~~~~d~g~y--~~~n~ 116 (139)
...+..|+.+.|.|.+.+ |.+.+.| ++.. .....|.|..+..+|.|.| .+.|.
T Consensus 5 ~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~ 73 (89)
T cd04979 5 VVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEH 73 (89)
T ss_pred EEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecC
Confidence 345678999999999987 7777888 2221 1224688999999999999 44444
No 207
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=97.99 E-value=5.5e-05 Score=41.69 Aligned_cols=49 Identities=24% Similarity=0.360 Sum_probs=35.6
Q ss_pred eEEEEC-CEEeee--------c--CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFS-KIELLY--------N--RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~-~~~~~~--------~--~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|+++ +..+.. . ...|.|.++...|+|.|.|.+.+..+.. ...+.|.|
T Consensus 26 ~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~-~~~~~l~V 85 (86)
T smart00410 26 VTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSA-SSTTTLTV 85 (86)
T ss_pred EEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeE-EEEEEEEE
Confidence 679998 554421 1 2679999999999999999999777663 33366554
No 208
>smart00409 IG Immunoglobulin.
Probab=97.99 E-value=5.5e-05 Score=41.69 Aligned_cols=49 Identities=24% Similarity=0.360 Sum_probs=35.6
Q ss_pred eEEEEC-CEEeee--------c--CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 2 LVIFFS-KIELLY--------N--RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~-~~~~~~--------~--~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+.|+++ +..+.. . ...|.|.++...|+|.|.|.+.+..+.. ...+.|.|
T Consensus 26 ~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~-~~~~~l~V 85 (86)
T smart00409 26 VTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSA-SSTTTLTV 85 (86)
T ss_pred EEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeE-EEEEEEEE
Confidence 679998 554421 1 2679999999999999999999777663 33366554
No 209
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.98 E-value=9.9e-06 Score=46.76 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=22.7
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCCC
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIGE 41 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~ 41 (139)
..|.|.+++.+|+|.|.|.+.|..+.
T Consensus 65 ~~L~I~~l~~sDsgtY~C~v~~~~~~ 90 (94)
T cd07690 65 FPLIIKNLKIEDSDTYICEVEDKKEE 90 (94)
T ss_pred EEEEECCCCHHHCEEEEEEECCccce
Confidence 45999999999999999999887543
No 210
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=97.97 E-value=5.2e-05 Score=43.84 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=40.2
Q ss_pred ceEeeCCCCeEEEEEEeeeCCCcEEEEcC----------e------ee-------ecceEEEEecCCCCceeEEE
Q psy12134 62 QWIHTAPDMRAEIICNVYANPPAKRFDEG----------T------RF-------DEGTVTAKVLQPFSERTLSV 113 (139)
Q Consensus 62 ~~~~~~~g~~~~l~C~~~~~p~~~~~~~~----------~------~~-------~~~~l~i~~~~~~d~g~y~~ 113 (139)
+...+.+|+++.|.|.+.+.|.+.++|-. . +. ....|.|.++..+|+|.|.|
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C 79 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTC 79 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEE
Confidence 44677899999999999999989898821 0 11 12468899999999999933
No 211
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=97.97 E-value=3.6e-05 Score=44.52 Aligned_cols=58 Identities=7% Similarity=0.002 Sum_probs=44.4
Q ss_pred eEeeCCCCeEEEEEEe-eeCCCcEEEE--cCee------------eecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134 63 WIHTAPDMRAEIICNV-YANPPAKRFD--EGTR------------FDEGTVTAKVLQPFSERTL--SVQDKIGPG 120 (139)
Q Consensus 63 ~~~~~~g~~~~l~C~~-~~~p~~~~~~--~~~~------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~ 120 (139)
...+.+|+.+.|.|.. .+.|++.++| ++.. ...+.|.+.++..+|.|.| .|+|.+...
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 3566789999999975 6778889999 2211 1357899999999999999 777775444
No 212
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.97 E-value=2.8e-05 Score=45.36 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=29.9
Q ss_pred CCeEEEcccCCCCCEEEEEEEEc-CCCCceeeeEEEEE
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASN-NIGESTSKNFIVNV 51 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n-~~~~~~s~~~~l~v 51 (139)
+..|.|.+++.+|+|.|.|.+.+ +.|. .++.+.|.|
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~-~~~~~~L~V 99 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAGN-FEAELVLTV 99 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCCC-eeeEEEEEe
Confidence 36799999999999999999998 4455 477777776
No 213
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=97.96 E-value=4.2e-05 Score=44.07 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=26.0
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
..|.|.+++.+|+|.|.|.+.+... .++.+.|.|
T Consensus 62 ~~L~I~~v~~~DsG~Y~C~~~~~~~--~~~~~~~~v 95 (95)
T cd05717 62 LSISISNVSLSDEGRYTCSLYTMPV--QTAKATVTV 95 (95)
T ss_pred eEEEEccCCcccCEEEEEEEecCCC--ceEEEEEEC
Confidence 4689999999999999999987542 245555543
No 214
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.95 E-value=0.00011 Score=42.08 Aligned_cols=63 Identities=10% Similarity=0.027 Sum_probs=42.5
Q ss_pred CCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCee---------eecceEEEEecCCCCceeEEEEcccC
Q psy12134 54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTR---------FDEGTVTAKVLQPFSERTLSVQDKIG 118 (139)
Q Consensus 54 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~---------~~~~~l~i~~~~~~d~g~y~~~n~~g 118 (139)
+|.+.+.+.. .+..|++++|.|... .+...+.| ++.. .....+.|..+..+|.|.|.|+...+
T Consensus 2 kP~L~a~p~~-vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 2 KPSLWAEPSS-VVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCEEEecCCC-ccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 3566665543 667899999999886 44444433 4332 12346889999999999996655433
No 215
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=97.95 E-value=2.4e-05 Score=45.52 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=29.4
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
..|.|.+++.+|+|.|.|.+.+..+. .+..+.|.|
T Consensus 65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~i~l~v 99 (100)
T cd05713 65 VALRIHNVRASDEGLYTCFFQSDGFY-EEATVELKV 99 (100)
T ss_pred EEEEEEcCChhhCEEEEEEEecCCcE-EEEEEEEEE
Confidence 56999999999999999999987665 567777765
No 216
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=97.93 E-value=4.2e-05 Score=45.91 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=27.8
Q ss_pred CCeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEE
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVN 50 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~ 50 (139)
+.+|.|.+++.+|.|.|+|.+.|+.+.. ....+.|.
T Consensus 79 daSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~ 115 (116)
T cd05879 79 DGSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLY 115 (116)
T ss_pred eeEEEEccCCcccCEEEEEEEEcCCCcCCceeEEEEE
Confidence 3779999999999999999999987532 33445544
No 217
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=97.92 E-value=2.6e-05 Score=43.02 Aligned_cols=51 Identities=12% Similarity=0.147 Sum_probs=37.2
Q ss_pred EEEEEEeee-CCCcEEEE--cCeee----------------ecceEEEEecCCCCceeE--EEEcccCCCCC
Q psy12134 72 AEIICNVYA-NPPAKRFD--EGTRF----------------DEGTVTAKVLQPFSERTL--SVQDKIGPGPD 122 (139)
Q Consensus 72 ~~l~C~~~~-~p~~~~~~--~~~~~----------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~ 122 (139)
+.|.|.+.+ .|.+.+.| ++..+ ....|.|.++..+|.|.| .+.|.+|....
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~ 72 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSV 72 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeE
Confidence 368999875 56677777 33221 124688999999999999 88999887654
No 218
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.91 E-value=5.2e-05 Score=43.79 Aligned_cols=57 Identities=7% Similarity=-0.002 Sum_probs=44.6
Q ss_pred CceEeeCCCCeEEEEEE-eeeCCCcEEEEcCe--e----------eecceEEEEecCCCCce-eE--EEEccc
Q psy12134 61 KQWIHTAPDMRAEIICN-VYANPPAKRFDEGT--R----------FDEGTVTAKVLQPFSER-TL--SVQDKI 117 (139)
Q Consensus 61 ~~~~~~~~g~~~~l~C~-~~~~p~~~~~~~~~--~----------~~~~~l~i~~~~~~d~g-~y--~~~n~~ 117 (139)
.+...+.+|+.+.|.|. ..+.|.|.++|-.. . ...+.|.|.++..+|.| .| .|.|.+
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccc
Confidence 34567789999999997 68999999999211 1 13579999999999999 79 666664
No 219
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=97.86 E-value=4.7e-05 Score=44.76 Aligned_cols=37 Identities=22% Similarity=0.370 Sum_probs=31.1
Q ss_pred CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~ 52 (139)
...|.|.+++.+|+|.|.|.+.+..+. ..+.+.|.|.
T Consensus 67 ~~sL~I~~v~~sD~G~Y~C~v~~~~~~-~~~~v~L~V~ 103 (106)
T cd05714 67 DASLVITDLRLEDSGRYRCEVIDGIED-EQDTVELEVR 103 (106)
T ss_pred cceEEECCCCHHHCEEEEEEEEcCCCc-eEEEEEEEEE
Confidence 378999999999999999999987655 5777777775
No 220
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=97.85 E-value=9.4e-05 Score=41.69 Aligned_cols=50 Identities=14% Similarity=0.029 Sum_probs=37.8
Q ss_pred CCeEEEEEEeeeCCCcEEEEc--Cee----e------------ecceEEEEecCCCCceeE--EEEcccC
Q psy12134 69 DMRAEIICNVYANPPAKRFDE--GTR----F------------DEGTVTAKVLQPFSERTL--SVQDKIG 118 (139)
Q Consensus 69 g~~~~l~C~~~~~p~~~~~~~--~~~----~------------~~~~l~i~~~~~~d~g~y--~~~n~~g 118 (139)
|+++.|.|.+.+.|.+.+.|. +.. . ....|.|..++.+|.|.| .+.|..+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~ 70 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQ 70 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECcc
Confidence 688999999999998888882 110 0 134799999999999999 5555543
No 221
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.84 E-value=4.7e-05 Score=44.75 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=30.5
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~ 52 (139)
..|.|.+++.+|+|.|.|.+.+..+. ....+.|.|.
T Consensus 68 ~sL~I~~v~~~DsG~Y~C~v~~~~~~-~~~~~~l~v~ 103 (106)
T cd05877 68 ASLVITDLRLEDYGRYRCEVIDGLED-ESVVVALRLR 103 (106)
T ss_pred EEEEEccCChHHCEEEEEEEEecccc-eEEEEEEEEE
Confidence 47999999999999999999987766 4677777765
No 222
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.81 E-value=4.7e-05 Score=40.82 Aligned_cols=47 Identities=26% Similarity=0.252 Sum_probs=33.9
Q ss_pred eEEEECCEEeeecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134 2 LVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY 53 (139)
Q Consensus 2 ~~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~ 53 (139)
++|+++..........|.|..+..+-.|.|.|.+++. +....|.|.|
T Consensus 19 i~W~kG~~~~~~~~~tlnLGs~~~DPRG~Y~C~~s~~-----~~~~~LQVyY 65 (69)
T cd07691 19 ITWKKGKEILEVSNTLLDLGSRINDPRGTYSCKESEP-----NKEKTLQVYY 65 (69)
T ss_pred EEEecCcccccccccEEeccCcccCCCcceEecCccC-----CCcEEEEEEE
Confidence 7899944333334678999999999999999999761 3444555654
No 223
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=97.80 E-value=8.4e-05 Score=42.90 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=29.4
Q ss_pred CCeEEEcccCCCCCEEEEEEEEc-CCCCceeeeEEEEEe
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASN-NIGESTSKNFIVNVI 52 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n-~~~~~~s~~~~l~v~ 52 (139)
+..|.|.+++.+|+|.|.|.+.+ +.|. ....+.|.|+
T Consensus 61 ~~sL~I~~v~~~D~G~Y~C~v~~~~~g~-~~~~~~l~V~ 98 (98)
T cd05718 61 DATISISNLRLEDEGNYICEFATFPQGN-RQKVTTLTVL 98 (98)
T ss_pred ceEEEEccCCcccCEEEEEEEEeCCCCc-EEEEEEEEeC
Confidence 36899999999999999999875 4455 5777777663
No 224
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.79 E-value=0.00027 Score=42.36 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=30.8
Q ss_pred CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~ 52 (139)
+.+|.|.+++.+|+|.|.|++.+.... ..+.+.|.|.
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~-~~~~v~L~V~ 114 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIED-TQDTVSLDVS 114 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcc-cEEEEEEEEE
Confidence 478999999999999999999887655 4677777765
No 225
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.76 E-value=0.00014 Score=43.42 Aligned_cols=37 Identities=19% Similarity=0.366 Sum_probs=29.5
Q ss_pred CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~ 52 (139)
+..|.|.+++.+|+|.|.|.+.+.+.. .+..+.|.|.
T Consensus 73 ~asL~I~nl~~sDsG~Y~C~V~~g~~~-~~~~v~l~v~ 109 (112)
T cd05900 73 DATLEITELRSNDSGTYRCEVMHGIED-NYDTVEVQVK 109 (112)
T ss_pred CcEEEEeecccccCEEEEEEEecCCCC-ceeEEEEEEE
Confidence 478999999999999999999977644 3566666654
No 226
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.75 E-value=0.00012 Score=38.78 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=33.6
Q ss_pred CCeEEEEEEe-eeCCCcEEEE--cCee------e----ecc----eEEEEecCCCCceeEEEE
Q psy12134 69 DMRAEIICNV-YANPPAKRFD--EGTR------F----DEG----TVTAKVLQPFSERTLSVQ 114 (139)
Q Consensus 69 g~~~~l~C~~-~~~p~~~~~~--~~~~------~----~~~----~l~i~~~~~~d~g~y~~~ 114 (139)
|+++.|.|.+ ...++..+.| ++.. . ... .|.|.++..+|+|.|.|.
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 63 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCV 63 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEE
Confidence 7899999999 6667778888 2211 0 111 299999999999999653
No 227
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=97.71 E-value=0.00027 Score=38.81 Aligned_cols=59 Identities=15% Similarity=0.268 Sum_probs=41.5
Q ss_pred CeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCeeee--cceEEEEecCCCCceeEEEEc
Q psy12134 55 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTRFD--EGTVTAKVLQPFSERTLSVQD 115 (139)
Q Consensus 55 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~~--~~~l~i~~~~~~d~g~y~~~n 115 (139)
|.+...+ ..+..|+.+.|.|.+.+.|...+.| ++.... .+.+.+..+..+|.|.|.|.-
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~g~y~C~~ 64 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQNGLFIPNVSPEDSGNYTCRA 64 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEESSEEEESSEEGGGTEEEEEEE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeeeeeeeeeeeccccCEEEEEEE
Confidence 5555444 3467899999999999988888888 333322 234677888899999994433
No 228
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.69 E-value=8.8e-05 Score=40.17 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=21.3
Q ss_pred CCeEEEcccCCCCCEEEEEEEEc
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASN 37 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n 37 (139)
.+.|.|.++..+|.|.|+|.|.|
T Consensus 53 ~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 53 NSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEESSCCGGGTEEEEEEEEE
T ss_pred eeEEEEccCCHHhCcEEEEEEEC
Confidence 57899999999999999999986
No 229
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.69 E-value=0.00012 Score=42.37 Aligned_cols=35 Identities=31% Similarity=0.457 Sum_probs=29.1
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCC-CCceeeeEEEEE
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNI-GESTSKNFIVNV 51 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~-~~~~s~~~~l~v 51 (139)
..|.|.+++.+|+|.|.|.+.... |. .+..+.|+|
T Consensus 61 ~sL~I~nv~~~D~G~Y~C~~~~~p~g~-~~~~~~L~v 96 (97)
T cd05846 61 TSITIWNVTLEDEGCYKCIFNTFPDGS-KSGTMCLTV 96 (97)
T ss_pred cEEEEeCCceeeeEEEEEEEEeCCCCC-eeeEEEEEE
Confidence 779999999999999999987644 54 677777776
No 230
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.65 E-value=0.00016 Score=42.93 Aligned_cols=37 Identities=22% Similarity=0.419 Sum_probs=30.4
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY 53 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~ 53 (139)
..|+|.+++.+|+|.|.|.+...... .++.+.|.|..
T Consensus 72 asL~I~~l~~sD~G~Y~C~v~~~~~~-~~~~v~l~V~g 108 (110)
T cd05878 72 ASLEISRLRSSDSGVYRCEVMHGIED-EQDTVPLEVTG 108 (110)
T ss_pred EEEEECCCChhhCEEEEEEEEeCCCc-ceEEEEEEEEE
Confidence 66999999999999999999876544 57777777753
No 231
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=97.65 E-value=0.00015 Score=41.71 Aligned_cols=58 Identities=5% Similarity=-0.066 Sum_probs=42.9
Q ss_pred EeeCCCCeEEEEEEeee-----CCCcEEEE--cCeee--------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134 64 IHTAPDMRAEIICNVYA-----NPPAKRFD--EGTRF--------DEGTVTAKVLQPFSERTL--SVQDKIGPGP 121 (139)
Q Consensus 64 ~~~~~g~~~~l~C~~~~-----~p~~~~~~--~~~~~--------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~ 121 (139)
..+..|.++.|.|.... +|.+.+.| ++..+ ..+.|.|..+..+|.|.| .+.|.+|...
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~ 79 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ 79 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence 34567999999998653 24667777 44332 357899999999999999 7787766644
No 232
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.65 E-value=5.7e-05 Score=43.64 Aligned_cols=40 Identities=15% Similarity=0.010 Sum_probs=30.9
Q ss_pred eEEEECCEEee--------ecCCeEEEcccCCCCCE-EEEEEEEcCCCC
Q psy12134 2 LVIFFSKIELL--------YNRESLDLDRVTLKLAG-LYQCIASNNIGE 41 (139)
Q Consensus 2 ~~W~~~~~~~~--------~~~~~L~i~~v~~~d~G-~Y~C~~~n~~~~ 41 (139)
+.|++++.... ..++.|.|.+++.+|+| .|.|.|.|....
T Consensus 36 i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 36 IYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred EEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence 68997654321 13589999999999999 899999987633
No 233
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.64 E-value=0.00017 Score=39.00 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=39.5
Q ss_pred CeEEecCceEeeCCCCeEEEEEEeeeCC-CcEEEEcCee-----------eecceEEEEecCCCCceeEEE
Q psy12134 55 PEVSVEKQWIHTAPDMRAEIICNVYANP-PAKRFDEGTR-----------FDEGTVTAKVLQPFSERTLSV 113 (139)
Q Consensus 55 p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~~~~~~-----------~~~~~l~i~~~~~~d~g~y~~ 113 (139)
|.+...+.......+. +.|.|.+.+.+ .+.+.|.... .....|.+..+..+|.|.|.|
T Consensus 2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C 71 (75)
T PF13927_consen 2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTC 71 (75)
T ss_dssp SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEE
T ss_pred CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEE
Confidence 5555544443433333 99999999888 6677886111 234578888999999999933
No 234
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.63 E-value=0.00024 Score=41.18 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=25.4
Q ss_pred CCeEEEcccCCCCCEEEEEEEEcCC-CCceeeeEE
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASNNI-GESTSKNFI 48 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n~~-~~~~s~~~~ 48 (139)
+.+|.|.+++.+|+|.|+|.+.+.. |. ..+.+.
T Consensus 59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g~-~~~~i~ 92 (96)
T cd05889 59 DMSLSFNNATEEDVGLYCCSLVTYPQGS-WEKVIE 92 (96)
T ss_pred ccEEEEcCCCcccCEEEEEEEEeCCCCC-eEEEEE
Confidence 4789999999999999999997654 44 344433
No 235
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.57 E-value=0.00019 Score=41.37 Aligned_cols=50 Identities=24% Similarity=0.279 Sum_probs=33.1
Q ss_pred eEEEECCEEeee----------cCCeEEEcccCCCCCEEEEEEEEcCC----CCceeeeEEEEE
Q psy12134 2 LVIFFSKIELLY----------NRESLDLDRVTLKLAGLYQCIASNNI----GESTSKNFIVNV 51 (139)
Q Consensus 2 ~~W~~~~~~~~~----------~~~~L~i~~v~~~d~G~Y~C~~~n~~----~~~~s~~~~l~v 51 (139)
+.|+|+|..... ....+.|..++.+|+|.|.|...... -+..|+.+.|.|
T Consensus 31 f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~~~~~~~wS~~Sdpl~l~V 94 (94)
T cd05711 31 FILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSYNHSLYEWSAPSDPLKIVV 94 (94)
T ss_pred EEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEECCCCCccccCCCCCeEEeC
Confidence 679998754211 13568999999999999999975221 112466666543
No 236
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.57 E-value=0.00017 Score=42.87 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=30.4
Q ss_pred CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~ 52 (139)
+.+|.|.+++.+|+|.|.|.+...... .++.+.|.|.
T Consensus 71 ~asL~i~nv~~~D~G~Y~C~v~~g~~~-~~~~v~L~V~ 107 (110)
T cd05902 71 NASLVLSRLRYSDSGTYRCEVVLGIND-EQDTVPLEVT 107 (110)
T ss_pred eEEEEECCCCHHHCEEEEEEEEECCcc-cEEEEEEEEE
Confidence 368999999999999999999886543 5777777775
No 237
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=97.55 E-value=0.0006 Score=39.17 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=38.7
Q ss_pred eEeeCCCCeEEEEEEeeeCCCcEEEEcC---e-------------ee-------ecceEEEEecCCCCceeEEEE
Q psy12134 63 WIHTAPDMRAEIICNVYANPPAKRFDEG---T-------------RF-------DEGTVTAKVLQPFSERTLSVQ 114 (139)
Q Consensus 63 ~~~~~~g~~~~l~C~~~~~p~~~~~~~~---~-------------~~-------~~~~l~i~~~~~~d~g~y~~~ 114 (139)
...+.+|+++.|.|.+.+.+.+.+.|.. . +. ....|.|.++..+|.|.|.|.
T Consensus 6 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 80 (95)
T cd05717 6 DVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCS 80 (95)
T ss_pred cEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEE
Confidence 3566789999999999888777788821 0 00 123689999999999999444
No 238
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=97.55 E-value=0.00085 Score=38.42 Aligned_cols=49 Identities=14% Similarity=0.022 Sum_probs=36.5
Q ss_pred EeeCCCCeEEEEEEeeeCCCcEEEEcC--e------------e--eecceEEEEecCCCCceeEEE
Q psy12134 64 IHTAPDMRAEIICNVYANPPAKRFDEG--T------------R--FDEGTVTAKVLQPFSERTLSV 113 (139)
Q Consensus 64 ~~~~~g~~~~l~C~~~~~p~~~~~~~~--~------------~--~~~~~l~i~~~~~~d~g~y~~ 113 (139)
..+.+|+++.|.|... .|.+.+.|-. . . ...+.|.|..+..+|+|.|.|
T Consensus 6 ~~~~eG~~v~L~C~~~-~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C 70 (91)
T cd05871 6 VYGVENNSTFLECLPK-SPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTC 70 (91)
T ss_pred EEEecCCcEEEEEECC-CCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEE
Confidence 3456899999999974 7778888821 0 0 133579999999999999933
No 239
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.53 E-value=0.0012 Score=37.98 Aligned_cols=62 Identities=11% Similarity=0.051 Sum_probs=40.6
Q ss_pred CeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE--cCee------------eecceEEEEecCCCCceeEEEEcccC
Q psy12134 55 PEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD--EGTR------------FDEGTVTAKVLQPFSERTLSVQDKIG 118 (139)
Q Consensus 55 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~------------~~~~~l~i~~~~~~d~g~y~~~n~~g 118 (139)
|.+.+.+. ..+..|++++|.|.... ....+.| ++.. .....+.|..++.+|+|.|.|.....
T Consensus 2 P~l~a~p~-~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~~ 77 (94)
T cd05711 2 PFLSAHPS-PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSYN 77 (94)
T ss_pred CEEEecCC-CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEECC
Confidence 55665554 35678999999998765 3334444 2221 01335788899999999997765433
No 240
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.52 E-value=0.0002 Score=41.29 Aligned_cols=54 Identities=19% Similarity=0.102 Sum_probs=39.6
Q ss_pred eeCCCCeEEEEEEeeeCCCcEEEEc--C-ee---------------------e-----e--cceEEEEecCCCCceeE--
Q psy12134 65 HTAPDMRAEIICNVYANPPAKRFDE--G-TR---------------------F-----D--EGTVTAKVLQPFSERTL-- 111 (139)
Q Consensus 65 ~~~~g~~~~l~C~~~~~p~~~~~~~--~-~~---------------------~-----~--~~~l~i~~~~~~d~g~y-- 111 (139)
.+..|++++|.|...+.+.+.+.|. + .. . . ...|+|.++..+|.|+|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 4568999999999998888888883 1 10 0 0 12599999999999999
Q ss_pred EEEcccC
Q psy12134 112 SVQDKIG 118 (139)
Q Consensus 112 ~~~n~~g 118 (139)
.+.|..+
T Consensus 83 ~v~~~~~ 89 (94)
T cd07690 83 EVEDKKE 89 (94)
T ss_pred EECCccc
Confidence 5555544
No 241
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.50 E-value=0.00021 Score=42.80 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=26.4
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEE
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVN 50 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~ 50 (139)
..|.|.+++.+|+|.|.|.+.|+.+.. ....+.|.
T Consensus 79 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 114 (115)
T cd05880 79 ASILIWQLQPTDNGTYTCQVKNPPDVHGPIGEIRLR 114 (115)
T ss_pred eEEEEeeCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence 469999999999999999999876532 23444443
No 242
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=97.49 E-value=0.00075 Score=38.19 Aligned_cols=53 Identities=8% Similarity=-0.068 Sum_probs=37.5
Q ss_pred CCeEEEEEEeeeCCCc--EEEE--cCee------------------eecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134 69 DMRAEIICNVYANPPA--KRFD--EGTR------------------FDEGTVTAKVLQPFSERTL--SVQDKIGPGP 121 (139)
Q Consensus 69 g~~~~l~C~~~~~p~~--~~~~--~~~~------------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~ 121 (139)
|+++.|.|.+.+.+.+ .+.| .+.. .....|.|.++..+|.|.| .|.|..|...
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~ 77 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAK 77 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEec
Confidence 6889999999876644 5578 1210 0134689999999999999 6777666444
No 243
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.45 E-value=0.0003 Score=42.08 Aligned_cols=35 Identities=14% Similarity=0.229 Sum_probs=26.2
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEE
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVN 50 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~ 50 (139)
..|.|.+++.+|+|.|.|.+.|..+.. .+..+.|.
T Consensus 80 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 115 (116)
T cd05715 80 ASIVIHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLR 115 (116)
T ss_pred eEEEEeeCCcccCEEEEEEEEeCCCCCCCccEEEEe
Confidence 569999999999999999999876432 13344444
No 244
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=97.44 E-value=0.0011 Score=38.65 Aligned_cols=59 Identities=12% Similarity=0.004 Sum_probs=45.6
Q ss_pred eEeeCCCCeEEEEEEeeeCCCcE-EEEc--Cee----------e-------ecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134 63 WIHTAPDMRAEIICNVYANPPAK-RFDE--GTR----------F-------DEGTVTAKVLQPFSERTL--SVQDKIGPG 120 (139)
Q Consensus 63 ~~~~~~g~~~~l~C~~~~~p~~~-~~~~--~~~----------~-------~~~~l~i~~~~~~d~g~y--~~~n~~g~~ 120 (139)
...+..|+.+.|.|.+++.|+|. +.|. +.. . -...|.+.++..++.|.| .|.|...+.
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 45678999999999999999998 7882 110 0 114689999999999999 788886654
Q ss_pred C
Q psy12134 121 P 121 (139)
Q Consensus 121 ~ 121 (139)
+
T Consensus 92 s 92 (101)
T cd05860 92 S 92 (101)
T ss_pred E
Confidence 4
No 245
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.42 E-value=0.00069 Score=37.95 Aligned_cols=49 Identities=12% Similarity=0.032 Sum_probs=29.0
Q ss_pred eEEEECCEEeeec--------C------CeEEEcccCCCCCEEEEEEEEcCCCC--ceeeeEEEE
Q psy12134 2 LVIFFSKIELLYN--------R------ESLDLDRVTLKLAGLYQCIASNNIGE--STSKNFIVN 50 (139)
Q Consensus 2 ~~W~~~~~~~~~~--------~------~~L~i~~v~~~d~G~Y~C~~~n~~~~--~~s~~~~l~ 50 (139)
|+|++++.++... + +.|.+......+.+.|+|++.|+... ...+...|.
T Consensus 17 v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~~~~~~~~~~~ 81 (82)
T cd05761 17 IRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKSTDKQTQQVLE 81 (82)
T ss_pred EEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCCCCceeEEEEe
Confidence 7899999876321 1 33444333344557999999987633 234444443
No 246
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.34 E-value=0.0011 Score=37.23 Aligned_cols=49 Identities=10% Similarity=0.005 Sum_probs=29.6
Q ss_pred eEEEECCEEeeec--------C-------CeEEEcccCCCCCEEEEEEEEcCCCC--ceeeeEEEE
Q psy12134 2 LVIFFSKIELLYN--------R-------ESLDLDRVTLKLAGLYQCIASNNIGE--STSKNFIVN 50 (139)
Q Consensus 2 ~~W~~~~~~~~~~--------~-------~~L~i~~v~~~d~G~Y~C~~~n~~~~--~~s~~~~l~ 50 (139)
|+|+++|.++... . +.|.|......|...|+|++.++... ..++...|.
T Consensus 17 ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~~~~~~~~~~~ 82 (83)
T cd07705 17 IKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHDSDRSTSQRIE 82 (83)
T ss_pred eEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCCCCceeEEEee
Confidence 7899999875321 1 33444334445667999999987632 244554443
No 247
>PHA02633 hypothetical protein; Provisional
Probab=97.25 E-value=0.0015 Score=34.31 Aligned_cols=39 Identities=21% Similarity=0.276 Sum_probs=29.7
Q ss_pred CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecC
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP 54 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~ 54 (139)
+..|-|-++..+|+|.|.|...|.- .+...++.|.|...
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t-~c~~~si~l~V~~~ 55 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNET-YSDMMKFDLCICLR 55 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCC-eeEEEEEEEEEeec
Confidence 4668888999999999999998753 33566677777643
No 248
>KOG3515|consensus
Probab=97.24 E-value=0.0022 Score=49.52 Aligned_cols=125 Identities=16% Similarity=0.168 Sum_probs=85.3
Q ss_pred eEEEECCEEee-----ecCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEE
Q psy12134 2 LVIFFSKIELL-----YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76 (139)
Q Consensus 2 ~~W~~~~~~~~-----~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C 76 (139)
+.|++.+..+. ..+..|...++.++.-+.|-|++.|..+........+.|.++|.-...........+..+.+.|
T Consensus 40 ~eW~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c 119 (741)
T KOG3515|consen 40 VEWYHSTSGEHGRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACLPELGEIFQVDKGVVQIIC 119 (741)
T ss_pred eEEEecCcccccccccccCCceeeecchhhhhhhhhhhhcccccCceecceeeccccCccccccccchhhhcCCeEEEEE
Confidence 67998776554 2357788888888888999999999988777888899999988665444433445678888888
Q ss_pred Ee--eeCCCcEEEEc--Cee--------------------eecceEEEEecCCCCceeE--EEEcccCCCCCCCCc
Q psy12134 77 NV--YANPPAKRFDE--GTR--------------------FDEGTVTAKVLQPFSERTL--SVQDKIGPGPDSNLR 126 (139)
Q Consensus 77 ~~--~~~p~~~~~~~--~~~--------------------~~~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~~~~ 126 (139)
.+ .+.|.+.+.|. +.. .....+.+...+..+.|.| .+.|++-........
T Consensus 120 ~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~ 195 (741)
T KOG3515|consen 120 SAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQ 195 (741)
T ss_pred eecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccce
Confidence 54 34566667771 111 0123567777788899999 556653333333333
No 249
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.24 E-value=0.0022 Score=41.37 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=31.3
Q ss_pred CCeEEEcccCCCCCEEEEEEEEcC-CCCceeeeEEEEEec
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASNN-IGESTSKNFIVNVIY 53 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n~-~~~~~s~~~~l~v~~ 53 (139)
.+.|+|.+++.+|+|.|.|..... .|...+....|.|..
T Consensus 84 ~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 84 ESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred cceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEc
Confidence 478999999999999999998654 352467888888874
No 250
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.18 E-value=0.0013 Score=38.61 Aligned_cols=53 Identities=9% Similarity=-0.029 Sum_probs=38.4
Q ss_pred cCceEeeCCCCeEEEEEEeeeCCCcEEEEcCe-----e-------------------e------ecceEEEEecCCCCce
Q psy12134 60 EKQWIHTAPDMRAEIICNVYANPPAKRFDEGT-----R-------------------F------DEGTVTAKVLQPFSER 109 (139)
Q Consensus 60 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~~~-----~-------------------~------~~~~l~i~~~~~~d~g 109 (139)
.+....+.+|+++.|.|.+...+...++|-.. . . ....|.|.+++.+|+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG 83 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA 83 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence 34456678899999999998776667777110 0 0 1236888999999999
Q ss_pred eEE
Q psy12134 110 TLS 112 (139)
Q Consensus 110 ~y~ 112 (139)
.|.
T Consensus 84 ~Y~ 86 (109)
T cd04983 84 VYF 86 (109)
T ss_pred EEE
Confidence 993
No 251
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.16 E-value=0.00066 Score=39.79 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=21.0
Q ss_pred CeEEEcccCCCCCEEEEEEEEcC
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNN 38 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~ 38 (139)
..|.|.+++.+|+|.|.|.+...
T Consensus 79 ~sL~i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 79 FSLTIKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp EEEEESSESGGGEEEEEEEEEES
T ss_pred EEEEECCCCcCcCEEEEEEEEEC
Confidence 46999999999999999999876
No 252
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.11 E-value=0.0018 Score=38.19 Aligned_cols=51 Identities=12% Similarity=0.233 Sum_probs=36.9
Q ss_pred cCceEeeCCCCeEEEEEEeeeCCCcEEEE----cCee----------------------e-------ecceEEEEecCCC
Q psy12134 60 EKQWIHTAPDMRAEIICNVYANPPAKRFD----EGTR----------------------F-------DEGTVTAKVLQPF 106 (139)
Q Consensus 60 ~~~~~~~~~g~~~~l~C~~~~~p~~~~~~----~~~~----------------------~-------~~~~l~i~~~~~~ 106 (139)
.+....+.+|+++.|.|...+ +.+.++| .+.. . ....|.|.++..+
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~ 82 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPE 82 (110)
T ss_pred CCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChh
Confidence 445567788999999999987 6666777 1100 0 1236888999999
Q ss_pred CceeE
Q psy12134 107 SERTL 111 (139)
Q Consensus 107 d~g~y 111 (139)
|+|.|
T Consensus 83 Dsg~Y 87 (110)
T cd05899 83 DSAVY 87 (110)
T ss_pred hCEEE
Confidence 99999
No 253
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=97.06 E-value=0.0018 Score=36.62 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=39.0
Q ss_pred EeeCCCCeEEEEEEeeeCCCcEEEE--cCeee--------ecceEEEEecCCCCceeEEEEcc
Q psy12134 64 IHTAPDMRAEIICNVYANPPAKRFD--EGTRF--------DEGTVTAKVLQPFSERTLSVQDK 116 (139)
Q Consensus 64 ~~~~~g~~~~l~C~~~~~p~~~~~~--~~~~~--------~~~~l~i~~~~~~d~g~y~~~n~ 116 (139)
..+..|+++.|.|...+. .+.+.| ++... ....|.|..+..+|+|.|.|...
T Consensus 6 ~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 6 RTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred EEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEe
Confidence 456789999999999876 557777 44432 33457899999999999966554
No 254
>smart00409 IG Immunoglobulin.
Probab=97.06 E-value=0.0062 Score=33.18 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=37.3
Q ss_pred EeeCCCCeEEEEEEeeeCCCcEEEE--c-Cee---------ee---cceEEEEecCCCCceeEEE
Q psy12134 64 IHTAPDMRAEIICNVYANPPAKRFD--E-GTR---------FD---EGTVTAKVLQPFSERTLSV 113 (139)
Q Consensus 64 ~~~~~g~~~~l~C~~~~~p~~~~~~--~-~~~---------~~---~~~l~i~~~~~~d~g~y~~ 113 (139)
..+..|+++.|.|.+.+.+.+.++| + +.. .. ...|.+..+...|.|.|.|
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 68 (86)
T smart00409 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTC 68 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEE
Confidence 3556799999999999887777777 3 221 11 2478999999999999933
No 255
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=97.06 E-value=0.0062 Score=33.18 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=37.3
Q ss_pred EeeCCCCeEEEEEEeeeCCCcEEEE--c-Cee---------ee---cceEEEEecCCCCceeEEE
Q psy12134 64 IHTAPDMRAEIICNVYANPPAKRFD--E-GTR---------FD---EGTVTAKVLQPFSERTLSV 113 (139)
Q Consensus 64 ~~~~~g~~~~l~C~~~~~p~~~~~~--~-~~~---------~~---~~~l~i~~~~~~d~g~y~~ 113 (139)
..+..|+++.|.|.+.+.+.+.++| + +.. .. ...|.+..+...|.|.|.|
T Consensus 4 ~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C 68 (86)
T smart00410 4 VTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTC 68 (86)
T ss_pred EEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEE
Confidence 3556799999999999887777777 3 221 11 2478999999999999933
No 256
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=97.06 E-value=0.002 Score=37.25 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.5
Q ss_pred CeEEEcccCCCCCEEEEEEEEcC
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNN 38 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~ 38 (139)
..|.|.+++.+|+|.|.|.+...
T Consensus 62 ~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 62 LRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred EEEEECcCCcccCEEEEEEEEcc
Confidence 45999999999999999999754
No 257
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=96.96 E-value=0.0011 Score=37.96 Aligned_cols=38 Identities=13% Similarity=0.241 Sum_probs=26.7
Q ss_pred eEEEECCEEeeec----------C------CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134 2 LVIFFSKIELLYN----------R------ESLDLDRVTLKLAGLYQCIASNNI 39 (139)
Q Consensus 2 ~~W~~~~~~~~~~----------~------~~L~i~~v~~~d~G~Y~C~~~n~~ 39 (139)
|+|+++|.++... + +.|.+......|.+.|+|++.+..
T Consensus 32 i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~ 85 (95)
T cd00098 32 VTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHES 85 (95)
T ss_pred EEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCC
Confidence 7899998775321 1 345555555568999999998864
No 258
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.96 E-value=0.001 Score=38.75 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.1
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCC
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIG 40 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~ 40 (139)
..|.|.+++.+|+|.|.|.+.+..+
T Consensus 67 ~sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 67 FTLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred EEEEECCCCHHHCEEEEEEEecCCC
Confidence 4789999999999999999987653
No 259
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.95 E-value=0.0028 Score=32.90 Aligned_cols=38 Identities=29% Similarity=0.445 Sum_probs=29.3
Q ss_pred eEEEECCEEee--------------ecCCeEEEcccCCCCCEEEEEEEEcCC
Q psy12134 2 LVIFFSKIELL--------------YNRESLDLDRVTLKLAGLYQCIASNNI 39 (139)
Q Consensus 2 ~~W~~~~~~~~--------------~~~~~L~i~~v~~~d~G~Y~C~~~n~~ 39 (139)
+.|++++.... .....|.|.++...|.|.|.|.+.+..
T Consensus 15 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 15 ITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred EEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 68999775532 123678899999999999999998754
No 260
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=96.88 E-value=0.0069 Score=35.00 Aligned_cols=53 Identities=19% Similarity=0.010 Sum_probs=35.9
Q ss_pred eEeeCCCCeEEEEEEeeeCCCcEEEE--cC--------e------e-------eecceEEEEecCCCCceeEEEEc
Q psy12134 63 WIHTAPDMRAEIICNVYANPPAKRFD--EG--------T------R-------FDEGTVTAKVLQPFSERTLSVQD 115 (139)
Q Consensus 63 ~~~~~~g~~~~l~C~~~~~p~~~~~~--~~--------~------~-------~~~~~l~i~~~~~~d~g~y~~~n 115 (139)
...+.+|+++.|.|.+.......+.| .+ . + ...-.|.|..+..+|+|.|.|+-
T Consensus 6 nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv 81 (95)
T cd05881 6 DVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQL 81 (95)
T ss_pred ceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEE
Confidence 35677899999999998864333333 00 0 0 01225899999999999995543
No 261
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.83 E-value=0.0057 Score=36.38 Aligned_cols=51 Identities=20% Similarity=0.155 Sum_probs=36.2
Q ss_pred CceEeeCCCCeEEEEEEeee--CCCcEEEEc----Cee-----------------------e--------ecceEEEEec
Q psy12134 61 KQWIHTAPDMRAEIICNVYA--NPPAKRFDE----GTR-----------------------F--------DEGTVTAKVL 103 (139)
Q Consensus 61 ~~~~~~~~g~~~~l~C~~~~--~p~~~~~~~----~~~-----------------------~--------~~~~l~i~~~ 103 (139)
+....+.+|+++.|.|.+.. .+.+.++|- +.. . ....|.|.++
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 44556678999999999876 556666771 110 0 1236889999
Q ss_pred CCCCceeE
Q psy12134 104 QPFSERTL 111 (139)
Q Consensus 104 ~~~d~g~y 111 (139)
+.+|+|.|
T Consensus 85 ~~~Dsg~Y 92 (116)
T cd04982 85 EKEDSATY 92 (116)
T ss_pred CHHHCEEE
Confidence 99999999
No 262
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.82 E-value=0.004 Score=36.48 Aligned_cols=53 Identities=17% Similarity=0.158 Sum_probs=36.5
Q ss_pred ecCceEeeCCCCeEEEEEEeeeCC-CcEEEEc----Cee------------------e------ecceEEEEecCCCCce
Q psy12134 59 VEKQWIHTAPDMRAEIICNVYANP-PAKRFDE----GTR------------------F------DEGTVTAKVLQPFSER 109 (139)
Q Consensus 59 ~~~~~~~~~~g~~~~l~C~~~~~p-~~~~~~~----~~~------------------~------~~~~l~i~~~~~~d~g 109 (139)
..+....+.+|+++.|.|.+.+.. ...++|- +.. . ....|.|.++..+|.|
T Consensus 5 Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg 84 (106)
T cd04980 5 QSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAA 84 (106)
T ss_pred ECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCE
Confidence 445556778899999999987654 4456671 110 0 1125888999999999
Q ss_pred eE
Q psy12134 110 TL 111 (139)
Q Consensus 110 ~y 111 (139)
.|
T Consensus 85 ~Y 86 (106)
T cd04980 85 VY 86 (106)
T ss_pred EE
Confidence 99
No 263
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=96.81 E-value=0.0055 Score=36.07 Aligned_cols=50 Identities=4% Similarity=-0.051 Sum_probs=33.5
Q ss_pred EeeCCCCeEEEEEEeeeCCCcEEEEcCe-------e-----------------------eecceEEEEecCCCCceeEEE
Q psy12134 64 IHTAPDMRAEIICNVYANPPAKRFDEGT-------R-----------------------FDEGTVTAKVLQPFSERTLSV 113 (139)
Q Consensus 64 ~~~~~g~~~~l~C~~~~~p~~~~~~~~~-------~-----------------------~~~~~l~i~~~~~~d~g~y~~ 113 (139)
..+.+|+++.|.|.........+.|.+. . ..+++|.|.++...|.|.|.|
T Consensus 8 ~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~ 87 (105)
T cd05774 8 PQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTL 87 (105)
T ss_pred CcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEE
Confidence 3556788888888654333335566111 0 235689999999999999944
No 264
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=96.79 E-value=0.0037 Score=35.14 Aligned_cols=38 Identities=13% Similarity=0.054 Sum_probs=25.3
Q ss_pred eEEEECCEEeeec---------------CCeEEEcccCCCCCEEEEEEEEcCC
Q psy12134 2 LVIFFSKIELLYN---------------RESLDLDRVTLKLAGLYQCIASNNI 39 (139)
Q Consensus 2 ~~W~~~~~~~~~~---------------~~~L~i~~v~~~d~G~Y~C~~~n~~ 39 (139)
|+|+|+|.++... .+.|.+..-...+...|+|++.+..
T Consensus 17 itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 17 IRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence 7899999875321 1345554333455668999998865
No 265
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=96.76 E-value=0.0091 Score=33.83 Aligned_cols=37 Identities=19% Similarity=0.217 Sum_probs=28.5
Q ss_pred eEEEECCEEee----ecCCeEEEcccCCCCCEEEEEEEEcC
Q psy12134 2 LVIFFSKIELL----YNRESLDLDRVTLKLAGLYQCIASNN 38 (139)
Q Consensus 2 ~~W~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~~~n~ 38 (139)
+.|+-.+.... ..+..|.+.++...|+|.++|.++..
T Consensus 33 i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 33 VEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred EEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEEEEC
Confidence 57886554422 35688999999999999999999643
No 266
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.66 E-value=0.0036 Score=33.35 Aligned_cols=35 Identities=17% Similarity=0.052 Sum_probs=27.2
Q ss_pred eEEEECCEEeeecCCeEEEcccCCCCCEEEEEEEEc
Q psy12134 2 LVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASN 37 (139)
Q Consensus 2 ~~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n 37 (139)
+.|.+++..+...+..+.+.+-. +++|.|.|.+.+
T Consensus 21 i~W~~n~~~~~g~~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 21 IKWKKNDQVSQGSDEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred ceEEeCCccCCCCCceEEeeccC-CCCceEEEEeCC
Confidence 57999986666655667776776 889999999854
No 267
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=96.64 E-value=0.004 Score=36.18 Aligned_cols=49 Identities=16% Similarity=0.103 Sum_probs=32.6
Q ss_pred eCCCCeEEEEEEeeeC-CCcEEEE----cCee-----------------------e------ecceEEEEecCCCCceeE
Q psy12134 66 TAPDMRAEIICNVYAN-PPAKRFD----EGTR-----------------------F------DEGTVTAKVLQPFSERTL 111 (139)
Q Consensus 66 ~~~g~~~~l~C~~~~~-p~~~~~~----~~~~-----------------------~------~~~~l~i~~~~~~d~g~y 111 (139)
+.+|++++|.|..... +...++| .+.. . ....|.|.+++.+|.|.|
T Consensus 3 v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y 82 (105)
T cd00099 3 VSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAVY 82 (105)
T ss_pred ecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEEE
Confidence 4578888888888765 4445566 1000 0 123788999999999999
Q ss_pred EEE
Q psy12134 112 SVQ 114 (139)
Q Consensus 112 ~~~ 114 (139)
.|.
T Consensus 83 ~C~ 85 (105)
T cd00099 83 YCA 85 (105)
T ss_pred EEE
Confidence 443
No 268
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=96.62 E-value=0.0022 Score=37.65 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.4
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNI 39 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~ 39 (139)
..|.|.+++.+|+|.|.|.+.+..
T Consensus 70 ~~L~I~~~~~~DsG~Y~C~~~~~~ 93 (109)
T cd04983 70 SSLHISAAQLSDSAVYFCALSESG 93 (109)
T ss_pred EEEEECCCCHHHCEEEEEEEecCC
Confidence 579999999999999999998653
No 269
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=96.62 E-value=0.0061 Score=34.54 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=17.8
Q ss_pred ecceEEEEecCCCCceeEEEEc
Q psy12134 94 DEGTVTAKVLQPFSERTLSVQD 115 (139)
Q Consensus 94 ~~~~l~i~~~~~~d~g~y~~~n 115 (139)
.+++|.|.+++.+|+|.|.|+-
T Consensus 55 ~~~sL~I~~l~~~DsG~Y~c~v 76 (92)
T cd05741 55 PNGSLLIQNLTKEDSGTYTLQI 76 (92)
T ss_pred CCceEEEccCCchhcEEEEEEE
Confidence 3468999999999999994443
No 270
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=96.45 E-value=0.042 Score=30.70 Aligned_cols=50 Identities=14% Similarity=0.057 Sum_probs=35.8
Q ss_pred EEEEEEee-eCCCcEEEE--cCeee--------------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134 72 AEIICNVY-ANPPAKRFD--EGTRF--------------DEGTVTAKVLQPFSERTL--SVQDKIGPGP 121 (139)
Q Consensus 72 ~~l~C~~~-~~p~~~~~~--~~~~~--------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~ 121 (139)
+.|.|... +.|++.+.| ++..+ ..+.|.+.....+|.+.| .|.|..+...
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~ 70 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQ 70 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCC
Confidence 67999975 678888877 33321 123688888889999999 7777766554
No 271
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=96.40 E-value=0.016 Score=33.48 Aligned_cols=57 Identities=4% Similarity=-0.101 Sum_probs=39.4
Q ss_pred eeCCCCeEEEEEEe-e----eCCCcEEEE--cCeee-----------ecceEEEEecCCCCceeE--EEEcccCCCC
Q psy12134 65 HTAPDMRAEIICNV-Y----ANPPAKRFD--EGTRF-----------DEGTVTAKVLQPFSERTL--SVQDKIGPGP 121 (139)
Q Consensus 65 ~~~~g~~~~l~C~~-~----~~p~~~~~~--~~~~~-----------~~~~l~i~~~~~~d~g~y--~~~n~~g~~~ 121 (139)
.+..|.+..|.|.- . .++.+.+.| ++..+ ....|.|..+..+|.|.| .+.+.+|...
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 44578889999973 2 235567777 44332 124799999999999999 6677655543
No 272
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.40 E-value=0.0077 Score=34.74 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.2
Q ss_pred CeEEEcccCCCCCEEEEEEEEcC
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNN 38 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~ 38 (139)
..|.|.+++.+|+|.|.|.+.+.
T Consensus 63 ~~L~I~~~~~~Dsg~Y~C~~~~~ 85 (98)
T cd04984 63 ASLTISGAQTEDEADYYCQVWDS 85 (98)
T ss_pred EEEEECCCChhhCEEEEEEEccC
Confidence 46899999999999999998753
No 273
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=96.40 E-value=0.013 Score=34.14 Aligned_cols=54 Identities=13% Similarity=0.075 Sum_probs=37.2
Q ss_pred cCceEeeCCCCeEEEEEEee-eCCCcEEEEcCee------------------------------e-----ecceEEEEec
Q psy12134 60 EKQWIHTAPDMRAEIICNVY-ANPPAKRFDEGTR------------------------------F-----DEGTVTAKVL 103 (139)
Q Consensus 60 ~~~~~~~~~g~~~~l~C~~~-~~p~~~~~~~~~~------------------------------~-----~~~~l~i~~~ 103 (139)
.+....+..|+++.|.|... ......++|.... . ....|.|.++
T Consensus 7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l 86 (114)
T PF07686_consen 7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL 86 (114)
T ss_dssp EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence 34556777899999999998 3445566771100 0 1135999999
Q ss_pred CCCCceeEEE
Q psy12134 104 QPFSERTLSV 113 (139)
Q Consensus 104 ~~~d~g~y~~ 113 (139)
..+|+|.|.|
T Consensus 87 ~~~DsG~Y~C 96 (114)
T PF07686_consen 87 QPSDSGTYFC 96 (114)
T ss_dssp SGGGEEEEEE
T ss_pred CcCcCEEEEE
Confidence 9999999943
No 274
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=96.33 E-value=0.024 Score=33.75 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=20.8
Q ss_pred cceEEEEecCCCCceeEEEEcccCCCC
Q psy12134 95 EGTVTAKVLQPFSERTLSVQDKIGPGP 121 (139)
Q Consensus 95 ~~~l~i~~~~~~d~g~y~~~n~~g~~~ 121 (139)
...|.|.+++.+|+|+|.|.-..|...
T Consensus 73 ~asL~I~nl~~sDsG~Y~C~V~~g~~~ 99 (112)
T cd05900 73 DATLEITELRSNDSGTYRCEVMHGIED 99 (112)
T ss_pred CcEEEEeecccccCEEEEEEEecCCCC
Confidence 458999999999999996655555433
No 275
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=96.31 E-value=0.011 Score=34.42 Aligned_cols=39 Identities=13% Similarity=0.248 Sum_probs=27.0
Q ss_pred eEEEECCEEeeec------------CCeEEEcccCCCCCE-EEEEEEEcCCCC
Q psy12134 2 LVIFFSKIELLYN------------RESLDLDRVTLKLAG-LYQCIASNNIGE 41 (139)
Q Consensus 2 ~~W~~~~~~~~~~------------~~~L~i~~v~~~d~G-~Y~C~~~n~~~~ 41 (139)
|+|||++..+... ..+|.+. +.++|.| .|+|+|.+.++.
T Consensus 36 i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 36 VVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDLRP 87 (100)
T ss_pred EEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccCc
Confidence 6899999876432 1445554 4556665 899999987644
No 276
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.28 E-value=0.007 Score=35.44 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.0
Q ss_pred CeEEEcccCCCCCEEEEEEEEcC
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNN 38 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~ 38 (139)
..|.|.+++.+|+|.|.|.+.+.
T Consensus 71 ~~L~I~~~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 71 FTLTISRVEPEDAAVYYCQQYGT 93 (106)
T ss_pred EEEEECCCChHHCEEEEEEEeCC
Confidence 45899999999999999998653
No 277
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.10 E-value=0.031 Score=33.26 Aligned_cols=53 Identities=9% Similarity=-0.016 Sum_probs=35.6
Q ss_pred ecCceEeeCCCCeEEEEEEeeeC-CCcEEEEc----Cee--------------------e------ecceEEEEecCCCC
Q psy12134 59 VEKQWIHTAPDMRAEIICNVYAN-PPAKRFDE----GTR--------------------F------DEGTVTAKVLQPFS 107 (139)
Q Consensus 59 ~~~~~~~~~~g~~~~l~C~~~~~-p~~~~~~~----~~~--------------------~------~~~~l~i~~~~~~d 107 (139)
+.+....+..|+++.|.|..... ....++|- +.. . ....|.|..+..+|
T Consensus 4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D 83 (116)
T cd07706 4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED 83 (116)
T ss_pred EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence 34455677889999999987653 34445671 110 0 11258888999999
Q ss_pred ceeE
Q psy12134 108 ERTL 111 (139)
Q Consensus 108 ~g~y 111 (139)
.|.|
T Consensus 84 sg~Y 87 (116)
T cd07706 84 SAKY 87 (116)
T ss_pred CEEE
Confidence 9999
No 278
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=96.07 E-value=0.02 Score=31.39 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=23.5
Q ss_pred eEEEECCEEeee----------cC------CeEEEcccCCCCCEEEEEEEEcC
Q psy12134 2 LVIFFSKIELLY----------NR------ESLDLDRVTLKLAGLYQCIASNN 38 (139)
Q Consensus 2 ~~W~~~~~~~~~----------~~------~~L~i~~v~~~d~G~Y~C~~~n~ 38 (139)
++|+|+|.++.. .+ +.|.|......+...|+|++.+.
T Consensus 18 v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 18 VTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred EEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 789999986321 11 34555444445667899998764
No 279
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.06 E-value=0.0035 Score=34.36 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=17.8
Q ss_pred CeEEEcccCCCCCEEEEEEE
Q psy12134 16 ESLDLDRVTLKLAGLYQCIA 35 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~ 35 (139)
..|.|.+++.+|+|.|.|.+
T Consensus 62 ~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 62 VSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred EEEEEcCCCHHHCEEEEEcC
Confidence 56899999999999999963
No 280
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=96.01 E-value=0.012 Score=33.91 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.4
Q ss_pred CeEEEcccCCCCCEEEEEEEEcC
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNN 38 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~ 38 (139)
..|.|.+++.+|+|.|.|.+...
T Consensus 64 ~~L~I~~v~~~DsG~Y~C~~~~~ 86 (98)
T cd05716 64 FTVTLNQLRKEDAGWYWCGVGDD 86 (98)
T ss_pred EEEEEcCCCHHHCEEEEEEcccC
Confidence 56899999999999999998754
No 281
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=95.96 E-value=0.012 Score=34.65 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=18.9
Q ss_pred eEEEcccCCCCCEEEEEEEEc
Q psy12134 17 SLDLDRVTLKLAGLYQCIASN 37 (139)
Q Consensus 17 ~L~i~~v~~~d~G~Y~C~~~n 37 (139)
.|.|.+++.+|+|.|.|...+
T Consensus 73 ~L~I~~~~~~Dsg~YyCa~~~ 93 (107)
T cd07700 73 RLHINRVKPEDSGTYFCMTVG 93 (107)
T ss_pred EEEECCCCHHHCEEEEEeEcC
Confidence 489999999999999999853
No 282
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=95.91 E-value=0.009 Score=35.22 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.7
Q ss_pred CeEEEcccCCCCCEEEEEEEEcC
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNN 38 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~ 38 (139)
..|.|.+++.+|+|.|.|.+.+.
T Consensus 72 ~~L~I~~~~~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 72 SSLTIKSAEPEDSAVYLCASSLG 94 (110)
T ss_pred cEEEECCCChhhCEEEEEEeeCC
Confidence 56999999999999999999764
No 283
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=95.88 E-value=0.023 Score=32.72 Aligned_cols=46 Identities=17% Similarity=0.176 Sum_probs=30.7
Q ss_pred eCCCCeEEEEEEeeeC--CCcEEEE----cCee------------------e------ecceEEEEecCCCCceeE
Q psy12134 66 TAPDMRAEIICNVYAN--PPAKRFD----EGTR------------------F------DEGTVTAKVLQPFSERTL 111 (139)
Q Consensus 66 ~~~g~~~~l~C~~~~~--p~~~~~~----~~~~------------------~------~~~~l~i~~~~~~d~g~y 111 (139)
+.+|+++.|.|..... ....++| .+.. . ....|.|.++..+|+|.|
T Consensus 3 v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y 78 (98)
T cd04984 3 VSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADY 78 (98)
T ss_pred cCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEE
Confidence 4578899999987654 3344566 1100 0 123588999999999999
No 284
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.72 E-value=0.02 Score=34.91 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=29.8
Q ss_pred eEEEECCEEeeec-----------------------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134 2 LVIFFSKIELLYN-----------------------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52 (139)
Q Consensus 2 ~~W~~~~~~~~~~-----------------------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~ 52 (139)
+.|.+++..+..- ..+|.+.....- .|+|+|++.....+ .+..+.|.+.
T Consensus 49 VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeVt~~~~e-ge~~i~Lk~~ 120 (130)
T PF08204_consen 49 VKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEVTELSRE-GETTIELKYR 120 (130)
T ss_dssp EEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEEEETTEE-EEEEEEEEE-
T ss_pred EEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEEEecCCC-ceEEEEEEEE
Confidence 6799988875431 123776654333 69999999876654 4556666553
No 285
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=95.62 E-value=0.1 Score=31.15 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=14.1
Q ss_pred eEEEEecCCCCceeE
Q psy12134 97 TVTAKVLQPFSERTL 111 (139)
Q Consensus 97 ~l~i~~~~~~d~g~y 111 (139)
.|.|.+++.+|+|.|
T Consensus 80 sL~I~~v~~~D~G~Y 94 (115)
T cd05880 80 SILIWQLQPTDNGTY 94 (115)
T ss_pred EEEEeeCChhhCEEE
Confidence 589999999999999
No 286
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=95.49 E-value=0.1 Score=31.21 Aligned_cols=20 Identities=10% Similarity=0.011 Sum_probs=16.3
Q ss_pred eEEEEecCCCCceeEEEEcc
Q psy12134 97 TVTAKVLQPFSERTLSVQDK 116 (139)
Q Consensus 97 ~l~i~~~~~~d~g~y~~~n~ 116 (139)
.|.|.+++.+|+|.|.|.-.
T Consensus 81 sL~I~~l~~~Dsg~Y~C~~~ 100 (119)
T cd05712 81 SLLISDAQPEDSGKYFFRVE 100 (119)
T ss_pred EEEEccCChhhCeEEEEEEE
Confidence 68999999999999955443
No 287
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=95.35 E-value=0.021 Score=34.20 Aligned_cols=23 Identities=17% Similarity=0.039 Sum_probs=20.3
Q ss_pred CeEEEcccCCCCCEEEEEEEEcC
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNN 38 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~ 38 (139)
..|.|.+++.+|+|.|.|++...
T Consensus 80 ~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 80 CSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EEEEEccCChhhCeEEEEEEEcC
Confidence 56999999999999999998653
No 288
>PHA03042 CD47-like protein; Provisional
Probab=95.31 E-value=0.076 Score=36.34 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=27.7
Q ss_pred CeEEEECCEEeeecC----CeEEEcccCCCCCEEEEEEEEcCCCC
Q psy12134 1 MLVIFFSKIELLYNR----ESLDLDRVTLKLAGLYQCIASNNIGE 41 (139)
Q Consensus 1 ~~~W~~~~~~~~~~~----~~L~i~~v~~~d~G~Y~C~~~n~~~~ 41 (139)
++.|.+++......+ ++|.+. -...-.|+|+|++.+...+
T Consensus 52 ~V~Wkf~~~~If~~n~tn~aSL~~~-f~~~l~GNYTCEv~~l~n~ 95 (286)
T PHA03042 52 HINWKFNNKVIFKKNNTNTSSLKFN-FSKNLSGNYTCEAINKFNK 95 (286)
T ss_pred EEEEEeCCeeEEEecCCcceEEEEe-ccccCCCceeEEEeecccC
Confidence 378999998765433 447663 3344579999999876544
No 289
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=95.26 E-value=0.078 Score=31.38 Aligned_cols=24 Identities=8% Similarity=0.041 Sum_probs=19.0
Q ss_pred ceEEEEecCCCCceeEEEEcccCC
Q psy12134 96 GTVTAKVLQPFSERTLSVQDKIGP 119 (139)
Q Consensus 96 ~~l~i~~~~~~d~g~y~~~n~~g~ 119 (139)
..|.|.+++.+|+|+|.|.-..+.
T Consensus 72 asL~I~~l~~sD~G~Y~C~v~~~~ 95 (110)
T cd05878 72 ASLEISRLRSSDSGVYRCEVMHGI 95 (110)
T ss_pred EEEEECCCChhhCEEEEEEEEeCC
Confidence 469999999999999966555443
No 290
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=95.25 E-value=0.038 Score=32.85 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.3
Q ss_pred CeEEEcccCCCCCEEEEEEEEcC
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNN 38 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~ 38 (139)
..|.|.++..+|+|.|.|.+...
T Consensus 72 ~sL~I~~~~~~Dsg~Y~C~~~~~ 94 (116)
T cd07706 72 ISLTISALQLEDSAKYFCALSTL 94 (116)
T ss_pred EEEEECCCCHHHCEEEEEEEECC
Confidence 46899999999999999999753
No 291
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=95.23 E-value=0.081 Score=30.21 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=17.3
Q ss_pred ecceEEEEecCCCCceeEEEE
Q psy12134 94 DEGTVTAKVLQPFSERTLSVQ 114 (139)
Q Consensus 94 ~~~~l~i~~~~~~d~g~y~~~ 114 (139)
....|.|.++..+|+|.|.|.
T Consensus 60 ~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 60 EDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CceEEEEccCCcccCEEEEEE
Confidence 345899999999999999443
No 292
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=95.21 E-value=0.23 Score=27.43 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=27.7
Q ss_pred EEEEEEeee-CCCcEEEE--cCeee----------ec-------ceEEEEecCCCCceeE--EEEcc
Q psy12134 72 AEIICNVYA-NPPAKRFD--EGTRF----------DE-------GTVTAKVLQPFSERTL--SVQDK 116 (139)
Q Consensus 72 ~~l~C~~~~-~p~~~~~~--~~~~~----------~~-------~~l~i~~~~~~d~g~y--~~~n~ 116 (139)
+.|.|.+.+ .|.+.+.| ++..+ .. ..|.+.....++.+.| .+.|.
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~ 68 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNE 68 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCc
Confidence 578999987 57778888 33321 11 1344555556677899 55555
No 293
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=95.21 E-value=0.2 Score=32.58 Aligned_cols=57 Identities=12% Similarity=0.120 Sum_probs=39.6
Q ss_pred EeeCCCCeEEEEEEee-eCCCcEEEEcCee----------------------e-----ecceEEEEecCCCCceeE-EEE
Q psy12134 64 IHTAPDMRAEIICNVY-ANPPAKRFDEGTR----------------------F-----DEGTVTAKVLQPFSERTL-SVQ 114 (139)
Q Consensus 64 ~~~~~g~~~~l~C~~~-~~p~~~~~~~~~~----------------------~-----~~~~l~i~~~~~~d~g~y-~~~ 114 (139)
..+.+|+++.|.|... +...+.+.|.+.. . ....+.|++++.+|+|.| .-.
T Consensus 25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F 104 (189)
T PHA02987 25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF 104 (189)
T ss_pred EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence 4566888999999874 4445566672210 1 345789999999999999 556
Q ss_pred cccCCC
Q psy12134 115 DKIGPG 120 (139)
Q Consensus 115 n~~g~~ 120 (139)
+..+.+
T Consensus 105 ~tfp~G 110 (189)
T PHA02987 105 NTLLSK 110 (189)
T ss_pred EecCCC
Confidence 666555
No 294
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=95.14 E-value=0.14 Score=30.16 Aligned_cols=37 Identities=30% Similarity=0.376 Sum_probs=28.2
Q ss_pred CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
+-.|.|..++..|+|.|.-++.+.-|.-....+.+.|
T Consensus 70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 70 NLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp TTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred CceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 4789999999999999999999987775555565554
No 295
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=94.97 E-value=0.17 Score=28.74 Aligned_cols=51 Identities=18% Similarity=0.063 Sum_probs=37.5
Q ss_pred eeCCCCeEEEEEEeeeCCCc--EEEEcCee--------eecceEEEEecCCCCceeEEEEc
Q psy12134 65 HTAPDMRAEIICNVYANPPA--KRFDEGTR--------FDEGTVTAKVLQPFSERTLSVQD 115 (139)
Q Consensus 65 ~~~~g~~~~l~C~~~~~p~~--~~~~~~~~--------~~~~~l~i~~~~~~d~g~y~~~n 115 (139)
.+..|++++|.|.....+.| .+.|.+.. .....|.+.++...|.|+..|.=
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V 70 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIV 70 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEE
Confidence 55679999999999765444 77882211 14568999999999999994443
No 296
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=94.91 E-value=0.4 Score=28.44 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=14.4
Q ss_pred ceEEEEecCCCCceeE
Q psy12134 96 GTVTAKVLQPFSERTL 111 (139)
Q Consensus 96 ~~l~i~~~~~~d~g~y 111 (139)
..|.|.+++.+|+|.|
T Consensus 80 ~sL~I~~v~~~D~G~Y 95 (116)
T cd05715 80 ASIVIHNLQFTDNGTY 95 (116)
T ss_pred eEEEEeeCCcccCEEE
Confidence 3589999999999999
No 297
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=94.91 E-value=0.025 Score=33.61 Aligned_cols=22 Identities=14% Similarity=0.289 Sum_probs=19.6
Q ss_pred CeEEEcccCCCCCEEEEEEEEc
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASN 37 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n 37 (139)
..|.|.+++.+|+|.|.|.+..
T Consensus 77 ~~L~I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 77 STLTIQNLEKEDSATYYCAYWE 98 (116)
T ss_pred EEEEEEECCHHHCEEEEEEEec
Confidence 4689999999999999999864
No 298
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=94.87 E-value=0.089 Score=30.65 Aligned_cols=20 Identities=5% Similarity=0.056 Sum_probs=16.6
Q ss_pred cceEEEEecCCCCceeEEEE
Q psy12134 95 EGTVTAKVLQPFSERTLSVQ 114 (139)
Q Consensus 95 ~~~l~i~~~~~~d~g~y~~~ 114 (139)
...|.|.+++.+|+|+|.|.
T Consensus 67 ~~sL~I~~v~~sD~G~Y~C~ 86 (106)
T cd05714 67 DASLVITDLRLEDSGRYRCE 86 (106)
T ss_pred cceEEECCCCHHHCEEEEEE
Confidence 45799999999999999443
No 299
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.84 E-value=0.036 Score=37.70 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=29.2
Q ss_pred eEEEECCEEe-ee-------cCCeEEEcccCCCCCEEEEEEEEcCC
Q psy12134 2 LVIFFSKIEL-LY-------NRESLDLDRVTLKLAGLYQCIASNNI 39 (139)
Q Consensus 2 ~~W~~~~~~~-~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~ 39 (139)
+.|.-.++.. .. ..+.|++.+...+++|.|+|.++...
T Consensus 15 y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 15 YLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred eEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 6788754432 21 24789999999999999999998655
No 300
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=94.57 E-value=0.093 Score=30.65 Aligned_cols=15 Identities=27% Similarity=0.133 Sum_probs=13.4
Q ss_pred eEEEEecCCCCceeE
Q psy12134 97 TVTAKVLQPFSERTL 111 (139)
Q Consensus 97 ~l~i~~~~~~d~g~y 111 (139)
.|.|..+..+|+|+|
T Consensus 70 ~L~I~~~~~sDsgtY 84 (104)
T cd05720 70 VLTLKNFQKENEGYY 84 (104)
T ss_pred EEEECCCCHHHCEEE
Confidence 588889999999999
No 301
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=94.57 E-value=0.54 Score=28.14 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=18.5
Q ss_pred cceEEEEecCCCCceeE--EEEcccC
Q psy12134 95 EGTVTAKVLQPFSERTL--SVQDKIG 118 (139)
Q Consensus 95 ~~~l~i~~~~~~d~g~y--~~~n~~g 118 (139)
+.++.|.+++.+|.|+| ...|.-+
T Consensus 79 daSI~I~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 79 DGSIVIHNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred eeEEEEccCCcccCEEEEEEEEcCCC
Confidence 35789999999999999 4555533
No 302
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=94.56 E-value=0.27 Score=28.92 Aligned_cols=50 Identities=8% Similarity=0.068 Sum_probs=32.9
Q ss_pred EeeCCCCeEEEEEEee-----------eCCCcEEEE--cCe-------------e--eecceEEEEecCCCCceeEEE
Q psy12134 64 IHTAPDMRAEIICNVY-----------ANPPAKRFD--EGT-------------R--FDEGTVTAKVLQPFSERTLSV 113 (139)
Q Consensus 64 ~~~~~g~~~~l~C~~~-----------~~p~~~~~~--~~~-------------~--~~~~~l~i~~~~~~d~g~y~~ 113 (139)
..+.+|+.+.|.|..- ......+.| ++. + ..+..|.|..+..+|+|.|.|
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C 87 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTC 87 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEE
Confidence 4556899999999861 111224445 321 1 235679999999999999944
No 303
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=94.52 E-value=0.084 Score=30.39 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=22.5
Q ss_pred eEEEECCEEeeec----------C------CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134 2 LVIFFSKIELLYN----------R------ESLDLDRVTLKLAGLYQCIASNNI 39 (139)
Q Consensus 2 ~~W~~~~~~~~~~----------~------~~L~i~~v~~~d~G~Y~C~~~n~~ 39 (139)
|+|+++|.++... + +.|.+..-...+...|+|++.+..
T Consensus 33 vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~ 86 (94)
T cd05847 33 VEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG 86 (94)
T ss_pred EEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence 7899999875221 1 334343222234568999997643
No 304
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=94.47 E-value=0.066 Score=31.12 Aligned_cols=37 Identities=11% Similarity=0.163 Sum_probs=22.3
Q ss_pred eEEEECCEEeeec----------C------CeEEEcccCCCCCEEEEEEEEcC
Q psy12134 2 LVIFFSKIELLYN----------R------ESLDLDRVTLKLAGLYQCIASNN 38 (139)
Q Consensus 2 ~~W~~~~~~~~~~----------~------~~L~i~~v~~~d~G~Y~C~~~n~ 38 (139)
|.|++||.++... + +.|.+..-...+...|+|++.+.
T Consensus 36 v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~ 88 (100)
T cd07699 36 VQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHE 88 (100)
T ss_pred EEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEec
Confidence 7899999886311 1 33334333223456899998765
No 305
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=94.45 E-value=0.033 Score=32.57 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.3
Q ss_pred CeEEEcccCCCCCEEEEEEEEc
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASN 37 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n 37 (139)
..|.|.+++.+|+|.|.|.+.+
T Consensus 69 ~~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 69 FVLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred EEEEECCCCHHHCEEEEEEEcc
Confidence 4589999999999999998753
No 306
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=94.42 E-value=0.096 Score=30.02 Aligned_cols=51 Identities=14% Similarity=-0.073 Sum_probs=32.0
Q ss_pred eeCCCCeEEEEEEeee-CCCcEEEEcCee-----------------------e------ecceEEEEecCCCCceeEEEE
Q psy12134 65 HTAPDMRAEIICNVYA-NPPAKRFDEGTR-----------------------F------DEGTVTAKVLQPFSERTLSVQ 114 (139)
Q Consensus 65 ~~~~g~~~~l~C~~~~-~p~~~~~~~~~~-----------------------~------~~~~l~i~~~~~~d~g~y~~~ 114 (139)
.+.+|++++|.|.... ......+|-... . ..-.|.|..+..+|+|.|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 3457888888888764 234445661100 0 112588889999999999443
Q ss_pred c
Q psy12134 115 D 115 (139)
Q Consensus 115 n 115 (139)
-
T Consensus 83 ~ 83 (98)
T cd05716 83 V 83 (98)
T ss_pred c
Confidence 3
No 307
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=94.33 E-value=0.082 Score=30.46 Aligned_cols=20 Identities=5% Similarity=0.017 Sum_probs=16.8
Q ss_pred cceEEEEecCCCCceeEEEE
Q psy12134 95 EGTVTAKVLQPFSERTLSVQ 114 (139)
Q Consensus 95 ~~~l~i~~~~~~d~g~y~~~ 114 (139)
..+|.|.+++.+|+|.|.|+
T Consensus 60 ~~sL~I~~~~~~DsG~Y~c~ 79 (97)
T cd05775 60 DYSLQISNLKMEDAGSYRAE 79 (97)
T ss_pred ceeEEECCCchHHCEEEEEE
Confidence 36799999999999999443
No 308
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=94.29 E-value=0.2 Score=28.85 Aligned_cols=35 Identities=14% Similarity=0.080 Sum_probs=20.1
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCC-CceeeeEEEE
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVN 50 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~-~~~s~~~~l~ 50 (139)
+.|.+.--...|.-.|+|++.|+.- ......+.|.
T Consensus 59 S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~L~ 94 (95)
T cd05719 59 SEYRLVPSREANGKELTCVVSHPTLQEPQRFSVTLN 94 (95)
T ss_pred EEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEee
Confidence 4565533333444589999998752 2244555554
No 309
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=94.10 E-value=0.18 Score=29.29 Aligned_cols=19 Identities=5% Similarity=-0.039 Sum_probs=15.8
Q ss_pred ceEEEEecCCCCceeEEEE
Q psy12134 96 GTVTAKVLQPFSERTLSVQ 114 (139)
Q Consensus 96 ~~l~i~~~~~~d~g~y~~~ 114 (139)
..|.|.+++.+|.|+|.|.
T Consensus 68 ~sL~I~~v~~~DsG~Y~C~ 86 (106)
T cd05877 68 ASLVITDLRLEDYGRYRCE 86 (106)
T ss_pred EEEEEccCChHHCEEEEEE
Confidence 4789999999999999443
No 310
>KOG1480|consensus
Probab=93.97 E-value=0.033 Score=43.32 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=37.2
Q ss_pred eEEEECCEEeee-------cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134 2 LVIFFSKIELLY-------NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52 (139)
Q Consensus 2 ~~W~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~ 52 (139)
+.|+|++..... ....+++..+...|+|+|+|++.|-.+......+.+.+.
T Consensus 162 ~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy 219 (909)
T KOG1480|consen 162 VEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY 219 (909)
T ss_pred hhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence 468988755433 347788999999999999999999876654544444443
No 311
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=93.97 E-value=0.58 Score=26.10 Aligned_cols=33 Identities=18% Similarity=0.134 Sum_probs=23.5
Q ss_pred EEECCEEeeecCCeEEEcccCCCCCEEEEEEEE
Q psy12134 4 IFFSKIELLYNRESLDLDRVTLKLAGLYQCIAS 36 (139)
Q Consensus 4 W~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~ 36 (139)
|.-.+...............+.+|+|.+.|.|+
T Consensus 31 l~~~~~k~~~~~~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 31 LENPGKKSLETKKLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp EECSSCEEEEESSEEEEESBTCGGSEEEEEEEE
T ss_pred eeccCccccccceEEEEecCCCCCCEEEEEEEc
Confidence 333444444455667777888899999999994
No 312
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=93.91 E-value=0.27 Score=28.20 Aligned_cols=20 Identities=10% Similarity=0.006 Sum_probs=16.7
Q ss_pred ecceEEEEecCCCCceeEEE
Q psy12134 94 DEGTVTAKVLQPFSERTLSV 113 (139)
Q Consensus 94 ~~~~l~i~~~~~~d~g~y~~ 113 (139)
....|.|.+++.+|+|.|.|
T Consensus 59 ~~~sL~I~nv~~~D~G~Y~C 78 (97)
T cd05846 59 NSTSITIWNVTLEDEGCYKC 78 (97)
T ss_pred CccEEEEeCCceeeeEEEEE
Confidence 34579999999999999933
No 313
>KOG3515|consensus
Probab=93.88 E-value=0.32 Score=38.14 Aligned_cols=86 Identities=15% Similarity=0.110 Sum_probs=59.8
Q ss_pred eEEEECCEEeeec----------CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCe
Q psy12134 2 LVIFFSKIELLYN----------RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR 71 (139)
Q Consensus 2 ~~W~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~ 71 (139)
+.|.+.+.++... ...+-+.++.+.|.|.|.|.+.|..|. ....+.+.+++.|....-........+++
T Consensus 434 ~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg-~~~~~~~~~~~sp~~~~~~~~~~~~~~ns 512 (741)
T KOG3515|consen 434 FYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGG-AQAYLLLGVHTSPHNHHLQDQVEGATGNS 512 (741)
T ss_pred hhheecceecccccCceEEeeccccccccceeeeccCCcceeeeccCCCc-eeeEEeeccccCCcccccccccccCCCCc
Confidence 4677766654322 122335678999999999999999987 46777778888777653333345567788
Q ss_pred EEEEEEeeeCCCcE--EEE
Q psy12134 72 AEIICNVYANPPAK--RFD 88 (139)
Q Consensus 72 ~~l~C~~~~~p~~~--~~~ 88 (139)
+...|.....+... +.|
T Consensus 513 ~~~~~~q~~~~~~~~m~~~ 531 (741)
T KOG3515|consen 513 VDGECMQDEQPQDQQMHHE 531 (741)
T ss_pred ccceeeccccccchhhhcc
Confidence 99999988877543 345
No 314
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=93.44 E-value=0.21 Score=29.21 Aligned_cols=15 Identities=13% Similarity=0.191 Sum_probs=13.4
Q ss_pred eEEEEecCCCCceeE
Q psy12134 97 TVTAKVLQPFSERTL 111 (139)
Q Consensus 97 ~l~i~~~~~~d~g~y 111 (139)
.|.|.++..+|.|.|
T Consensus 73 ~L~I~~~~~~Dsg~Y 87 (107)
T cd07700 73 RLHINRVKPEDSGTY 87 (107)
T ss_pred EEEECCCCHHHCEEE
Confidence 488889999999999
No 315
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=93.42 E-value=0.75 Score=25.63 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=34.2
Q ss_pred EEEEEEeeeC-CCcEEEE--cCeeee----------c-ce------EEEEecCCCCceeEEEEcccCCCCCCCCcceeee
Q psy12134 72 AEIICNVYAN-PPAKRFD--EGTRFD----------E-GT------VTAKVLQPFSERTLSVQDKIGPGPDSNLRPSAYM 131 (139)
Q Consensus 72 ~~l~C~~~~~-p~~~~~~--~~~~~~----------~-~~------l~i~~~~~~d~g~y~~~n~~g~~~~~~~~~~~~~ 131 (139)
+.|.|.+.+. |++.+.| ++..+. . +. |.+......+...|.|+-.+...+.+.+..+.++
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~~~~~~~~~~ 81 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHDSDRSTSQRI 81 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCCCCceeEEEe
Confidence 5789999875 7777778 333211 1 12 2222333455567766666556666666665544
No 316
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=93.27 E-value=0.83 Score=26.65 Aligned_cols=29 Identities=10% Similarity=0.027 Sum_probs=20.2
Q ss_pred cCceEeeCCCCeEEEEEEeee-CCCcE--EEE
Q psy12134 60 EKQWIHTAPDMRAEIICNVYA-NPPAK--RFD 88 (139)
Q Consensus 60 ~~~~~~~~~g~~~~l~C~~~~-~p~~~--~~~ 88 (139)
.+....+.+|+.++|.|.+.+ .|.+. +.|
T Consensus 7 ~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W 38 (100)
T cd05755 7 SPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVL 38 (100)
T ss_pred ecCCCcccCCCcEEEEEEEcCcCCCCcEEEEE
Confidence 333345578999999999976 45554 466
No 317
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=93.10 E-value=0.26 Score=30.27 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=15.7
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNI 39 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~ 39 (139)
+.|.|..-...+.+.|+|++.+..
T Consensus 108 s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 108 SHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred EEEEecCCccCCCCEEEEEEEcCC
Confidence 455665444445669999998753
No 318
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=93.07 E-value=0.26 Score=29.44 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=14.7
Q ss_pred eEEEEecCCCCceeE-EEE
Q psy12134 97 TVTAKVLQPFSERTL-SVQ 114 (139)
Q Consensus 97 ~l~i~~~~~~d~g~y-~~~ 114 (139)
.|.|.++..+|+|.| .|.
T Consensus 77 ~L~I~~~~~~Dsa~YyCa~ 95 (117)
T cd04981 77 YLQLNSLTPEDTAVYYCAR 95 (117)
T ss_pred EEEECCCCHHHCEEEEEEE
Confidence 578889999999999 443
No 319
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=93.06 E-value=0.4 Score=27.71 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=17.0
Q ss_pred ecceEEEEecCCCCceeEEE
Q psy12134 94 DEGTVTAKVLQPFSERTLSV 113 (139)
Q Consensus 94 ~~~~l~i~~~~~~d~g~y~~ 113 (139)
.+..|.|.+++.+|+|+|.|
T Consensus 62 ~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 62 ADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CceEEEEecCccccceEEEE
Confidence 35689999999999999943
No 320
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=92.98 E-value=0.33 Score=27.67 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=12.9
Q ss_pred ccCCCCCEEEEEEEEcCC
Q psy12134 22 RVTLKLAGLYQCIASNNI 39 (139)
Q Consensus 22 ~v~~~d~G~Y~C~~~n~~ 39 (139)
.+...+.+.|+|++.+..
T Consensus 66 ~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 66 EVPPEDKARYSCRVEHSG 83 (93)
T ss_pred EECCCCCCEEEEEEEeCC
Confidence 344457889999998653
No 321
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=92.77 E-value=0.66 Score=27.55 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=21.2
Q ss_pred eEEEECCEEeeec--------C-------CeEEEcccCCCCCE-EEEEEEEcC
Q psy12134 2 LVIFFSKIELLYN--------R-------ESLDLDRVTLKLAG-LYQCIASNN 38 (139)
Q Consensus 2 ~~W~~~~~~~~~~--------~-------~~L~i~~v~~~d~G-~Y~C~~~n~ 38 (139)
++|+|||.++... + +.|.+. ....|.| .|+|++.+.
T Consensus 40 v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~ 91 (111)
T cd05772 40 VKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHR 91 (111)
T ss_pred EEEEECCEECcccccceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeC
Confidence 7899999886421 1 223332 3344444 488888765
No 322
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=92.70 E-value=0.38 Score=27.64 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=22.5
Q ss_pred eEEEECCEEeee---------cCCeEEE---cccCCCCCEEEEEEEEcC
Q psy12134 2 LVIFFSKIELLY---------NRESLDL---DRVTLKLAGLYQCIASNN 38 (139)
Q Consensus 2 ~~W~~~~~~~~~---------~~~~L~i---~~v~~~d~G~Y~C~~~n~ 38 (139)
+.|+|||.++.. .+.+..+ -.++..+...|+|++...
T Consensus 34 v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 34 IRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred EEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 789999987531 1222222 133456677899998763
No 323
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=92.61 E-value=0.47 Score=27.17 Aligned_cols=18 Identities=6% Similarity=0.014 Sum_probs=15.7
Q ss_pred ceEEEEecCCCCceeEEE
Q psy12134 96 GTVTAKVLQPFSERTLSV 113 (139)
Q Consensus 96 ~~l~i~~~~~~d~g~y~~ 113 (139)
.+|.|.+++.+|+|.|.|
T Consensus 65 ~sL~I~~v~~~D~G~Y~C 82 (100)
T cd05713 65 VALRIHNVRASDEGLYTC 82 (100)
T ss_pred EEEEEEcCChhhCEEEEE
Confidence 479999999999999944
No 324
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=92.36 E-value=0.21 Score=27.72 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=22.3
Q ss_pred eEEEECCEEeee----------cC------CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134 2 LVIFFSKIELLY----------NR------ESLDLDRVTLKLAGLYQCIASNNI 39 (139)
Q Consensus 2 ~~W~~~~~~~~~----------~~------~~L~i~~v~~~d~G~Y~C~~~n~~ 39 (139)
|.|++++..+.. .+ +.|.+. ..+...|+|++.+..
T Consensus 27 v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 27 VTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES 77 (83)
T ss_dssp EEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred EEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence 789999987531 11 344443 455568999987653
No 325
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=92.28 E-value=0.44 Score=27.31 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=21.5
Q ss_pred eEEEECCEEeeec----------CCeEEE---cccCCCCCEEEEEEEEcC
Q psy12134 2 LVIFFSKIELLYN----------RESLDL---DRVTLKLAGLYQCIASNN 38 (139)
Q Consensus 2 ~~W~~~~~~~~~~----------~~~L~i---~~v~~~d~G~Y~C~~~n~ 38 (139)
++|+++|.++... +++..+ -.+...+...|+|++.+.
T Consensus 33 v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~ 82 (94)
T cd05766 33 VKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHS 82 (94)
T ss_pred EEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeC
Confidence 7899999875331 111111 123344566899988764
No 326
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=92.01 E-value=0.15 Score=30.49 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.1
Q ss_pred eEEEcccCCCCCEEEEEEEEc
Q psy12134 17 SLDLDRVTLKLAGLYQCIASN 37 (139)
Q Consensus 17 ~L~i~~v~~~d~G~Y~C~~~n 37 (139)
.|.|.++..+|+|.|.|.+..
T Consensus 77 ~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 77 YLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred EEEECCCCHHHCEEEEEEEEc
Confidence 589999999999999998864
No 327
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=91.97 E-value=0.5 Score=26.40 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=25.6
Q ss_pred eEEEECCEEeee---------c------CCeEEEcccCCCCCEEEEEEEEcCC
Q psy12134 2 LVIFFSKIELLY---------N------RESLDLDRVTLKLAGLYQCIASNNI 39 (139)
Q Consensus 2 ~~W~~~~~~~~~---------~------~~~L~i~~v~~~d~G~Y~C~~~n~~ 39 (139)
|+|+.++..+.. . .+.|.+..-..++...++|++.++.
T Consensus 32 i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~ 84 (89)
T PF08205_consen 32 ITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPA 84 (89)
T ss_dssp EEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETT
T ss_pred EEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCc
Confidence 789999877611 0 1456664443456678999999875
No 328
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=91.82 E-value=0.42 Score=27.59 Aligned_cols=24 Identities=8% Similarity=0.026 Sum_probs=15.5
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNI 39 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~ 39 (139)
+.|.+..-..+|...|+|++.+..
T Consensus 59 S~l~~~P~~~d~Gk~ltC~v~h~a 82 (95)
T cd07703 59 SEYSLVPTPEANGKEVTCKVEHET 82 (95)
T ss_pred EEEEEecCHHHCCCEEEEEEeCcc
Confidence 455553333444558999999864
No 329
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=91.80 E-value=0.46 Score=27.33 Aligned_cols=34 Identities=15% Similarity=0.284 Sum_probs=21.5
Q ss_pred eEEEECCEEeeec----------C------CeEEEcccCCCCCEEEEEEEEcC
Q psy12134 2 LVIFFSKIELLYN----------R------ESLDLDRVTLKLAGLYQCIASNN 38 (139)
Q Consensus 2 ~~W~~~~~~~~~~----------~------~~L~i~~v~~~d~G~Y~C~~~n~ 38 (139)
++|.+||.++... + +.|.+ ...+...|+|++...
T Consensus 34 v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v---~~~~~~~ytC~V~H~ 83 (94)
T cd05767 34 VTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF---TPEEGDIYSCIVEHW 83 (94)
T ss_pred EEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEE---ECCCCCeEEEEEEeC
Confidence 7899999875321 1 23333 334556899998764
No 330
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=91.73 E-value=0.96 Score=25.22 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=15.9
Q ss_pred CCeEEEEEEe-eeCCCcEEEE
Q psy12134 69 DMRAEIICNV-YANPPAKRFD 88 (139)
Q Consensus 69 g~~~~l~C~~-~~~p~~~~~~ 88 (139)
++.+.+.|.+ .+.|++.+.|
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W 34 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITW 34 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEE
T ss_pred ceEEEEEEEeCCeECCeEEEE
Confidence 7899999976 5678888888
No 331
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=91.55 E-value=0.54 Score=26.73 Aligned_cols=20 Identities=15% Similarity=0.081 Sum_probs=15.9
Q ss_pred CCeEEEEEEeeeCCCc--EEEE
Q psy12134 69 DMRAEIICNVYANPPA--KRFD 88 (139)
Q Consensus 69 g~~~~l~C~~~~~p~~--~~~~ 88 (139)
++.+.|.|.+.+..|+ .+.|
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W 35 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTW 35 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEE
Confidence 6789999999997554 4577
No 332
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=91.38 E-value=0.45 Score=27.43 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=8.7
Q ss_pred CEEEEEEEEcCC
Q psy12134 28 AGLYQCIASNNI 39 (139)
Q Consensus 28 ~G~Y~C~~~n~~ 39 (139)
.-.|+|.+.+..
T Consensus 75 g~~ysC~V~H~~ 86 (96)
T cd07696 75 GDTFQCKVTHPD 86 (96)
T ss_pred CCcEEEEEECCC
Confidence 347999998753
No 333
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=91.21 E-value=0.88 Score=26.07 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=25.3
Q ss_pred CCCCeEEEEEEeeeCCCcE--EEE--cCeeeecceEEEEecCCCCceeE
Q psy12134 67 APDMRAEIICNVYANPPAK--RFD--EGTRFDEGTVTAKVLQPFSERTL 111 (139)
Q Consensus 67 ~~g~~~~l~C~~~~~p~~~--~~~--~~~~~~~~~l~i~~~~~~d~g~y 111 (139)
..+...+|.|.+.+.-|+. +.| ++.....+ ........+..|+|
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~-~~~~~~~~~~dgTy 59 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEG-VVSTELIPNGDWTY 59 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCC-ceecceEECCCCcE
Confidence 3578899999999965554 467 44443222 11223333444566
No 334
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=90.55 E-value=1.6 Score=25.02 Aligned_cols=43 Identities=19% Similarity=0.202 Sum_probs=23.8
Q ss_pred CCCeEEEEEEeeeCCCcE--EEE--cCeeeecceEEEEecCCCCceeE
Q psy12134 68 PDMRAEIICNVYANPPAK--RFD--EGTRFDEGTVTAKVLQPFSERTL 111 (139)
Q Consensus 68 ~g~~~~l~C~~~~~p~~~--~~~--~~~~~~~~~l~i~~~~~~d~g~y 111 (139)
.+....|.|.+.++-|.. +.| +|.....+ .....+..+..|+|
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~-~~~~~~~~~~Dgty 60 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDG-VSETRYYPRQDLSF 60 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCc-eEEeeeEeCCCCcE
Confidence 356679999999975543 467 55443222 11123334444555
No 335
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=90.39 E-value=0.67 Score=27.76 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=16.1
Q ss_pred CCCeEEEEEEeeeCCCc--EEEE
Q psy12134 68 PDMRAEIICNVYANPPA--KRFD 88 (139)
Q Consensus 68 ~g~~~~l~C~~~~~p~~--~~~~ 88 (139)
.+..+.|.|.+.++-|. .+.|
T Consensus 17 ~~~~~tL~Cla~gFyP~~I~V~W 39 (115)
T cd05769 17 NKRKATLVCLATGFYPDHVSLSW 39 (115)
T ss_pred cCCCcEEEEEEEeEeCCCcEEEE
Confidence 46779999999997655 4577
No 336
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=90.06 E-value=1.6 Score=25.88 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=19.8
Q ss_pred eeCCCCeEEEEEEeeeCCCc--EEEE--cCee
Q psy12134 65 HTAPDMRAEIICNVYANPPA--KRFD--EGTR 92 (139)
Q Consensus 65 ~~~~g~~~~l~C~~~~~p~~--~~~~--~~~~ 92 (139)
....|+.+.|.|.+.++-|+ .+.| |+..
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~ 48 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNE 48 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEE
Confidence 44568889999999986554 5577 4444
No 337
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=89.66 E-value=1.6 Score=25.05 Aligned_cols=21 Identities=10% Similarity=-0.089 Sum_probs=15.9
Q ss_pred CCCeEEEEEEeeeCCCcE--EEE
Q psy12134 68 PDMRAEIICNVYANPPAK--RFD 88 (139)
Q Consensus 68 ~g~~~~l~C~~~~~p~~~--~~~ 88 (139)
..+.+.|.|.+.++-|.. +.|
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW 37 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTW 37 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEE
Confidence 466799999999976554 367
No 338
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=89.61 E-value=1.6 Score=24.47 Aligned_cols=21 Identities=14% Similarity=0.090 Sum_probs=17.0
Q ss_pred CCCeEEEEEEeeeC-CC-cEEEE
Q psy12134 68 PDMRAEIICNVYAN-PP-AKRFD 88 (139)
Q Consensus 68 ~g~~~~l~C~~~~~-p~-~~~~~ 88 (139)
.|..+.|.|.+.+. |. ..+.|
T Consensus 12 ~~~~~~L~C~a~g~~P~~~~i~W 34 (95)
T cd00098 12 LGGSVTLTCLATGFYPPDITVTW 34 (95)
T ss_pred cCCCeEEEEEEeeEECCCcEEEE
Confidence 68899999999997 43 45778
No 339
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=89.38 E-value=1.9 Score=23.83 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=18.6
Q ss_pred CCCeEEEEEEeeeCCCcE--EEE--cCeee
Q psy12134 68 PDMRAEIICNVYANPPAK--RFD--EGTRF 93 (139)
Q Consensus 68 ~g~~~~l~C~~~~~p~~~--~~~--~~~~~ 93 (139)
.+..+.|.|.+.+..|.. +.| ++...
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~ 36 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEV 36 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEE
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEecccee
Confidence 488999999999865543 477 45443
No 340
>PHA02982 hypothetical protein; Provisional
Probab=89.22 E-value=4.9 Score=26.87 Aligned_cols=69 Identities=12% Similarity=0.138 Sum_probs=40.2
Q ss_pred CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcEEEE
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD 88 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~ 88 (139)
.++|+|..+..+..|-|+|++....+....-.--|.|+-...+.. +. .......+.|.+.....+...|
T Consensus 99 ~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~~----W~-e~nNeT~V~CyVgS~~~dvp~W 167 (251)
T PHA02982 99 SSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKEDILYV----VE-EHNNETIITCFVGSKHGDVPRF 167 (251)
T ss_pred ceeEEeccCCcccCCceEEEEecCCCchheeheeeeEecceEEEE----EE-ecCCeEEEEEEEEeccCCCccE
Confidence 489999999999999999999876654322233344432222211 11 1233456778876544332245
No 341
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=89.18 E-value=0.77 Score=26.61 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=18.2
Q ss_pred CCCCeEEEEEEeeeCCCc--EEEE--cCee
Q psy12134 67 APDMRAEIICNVYANPPA--KRFD--EGTR 92 (139)
Q Consensus 67 ~~g~~~~l~C~~~~~p~~--~~~~--~~~~ 92 (139)
..+..+.|.|.+.+.-|. .+.| +|..
T Consensus 15 ~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~ 44 (100)
T cd07699 15 EKSGKATLVCLINDFYPGFATVQWKVDGAT 44 (100)
T ss_pred ccCCCcEEEEEEEeEECCCCEEEEEECCEE
Confidence 356789999999986543 3477 5544
No 342
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=88.65 E-value=1.5 Score=25.14 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=18.0
Q ss_pred CCCCeEEEEEEeeeCCCcE--EEE--cCee
Q psy12134 67 APDMRAEIICNVYANPPAK--RFD--EGTR 92 (139)
Q Consensus 67 ~~g~~~~l~C~~~~~p~~~--~~~--~~~~ 92 (139)
..|....|.|.+.++-|+. +.| +|..
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~ 42 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVK 42 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEE
Confidence 3466779999999976554 367 5544
No 343
>PHA03270 envelope glycoprotein C; Provisional
Probab=88.46 E-value=8.4 Score=28.60 Aligned_cols=70 Identities=14% Similarity=0.100 Sum_probs=50.7
Q ss_pred eEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeC-CCcE--EEE
Q psy12134 17 SLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYAN-PPAK--RFD 88 (139)
Q Consensus 17 ~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~--~~~ 88 (139)
.|.|..++...+|.|+=+..+..+.. ....+++....+|.+.+... .+.+|+...-.|.+... |+.. +.|
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrW 256 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRW 256 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEE
Confidence 48999999999999999877765432 34556666777887765543 34589999999998765 4433 367
No 344
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=88.31 E-value=3.7 Score=24.71 Aligned_cols=27 Identities=11% Similarity=0.062 Sum_probs=20.8
Q ss_pred cceEEEEecCCCCceeEEEEcccCCCC
Q psy12134 95 EGTVTAKVLQPFSERTLSVQDKIGPGP 121 (139)
Q Consensus 95 ~~~l~i~~~~~~d~g~y~~~n~~g~~~ 121 (139)
+.+|.|.+++.+|.|.|.|.=..|...
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~ 104 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIED 104 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcc
Confidence 457999999999999996665555433
No 345
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=87.83 E-value=1.9 Score=24.86 Aligned_cols=22 Identities=9% Similarity=-0.050 Sum_probs=16.2
Q ss_pred CCCCeEEEEEEeeeCCCcEE--EE
Q psy12134 67 APDMRAEIICNVYANPPAKR--FD 88 (139)
Q Consensus 67 ~~g~~~~l~C~~~~~p~~~~--~~ 88 (139)
..+..++|.|.+.+.-|+.+ .|
T Consensus 14 ~~~~~~tL~C~a~gFyP~~I~v~W 37 (96)
T cd07697 14 EKQGQGIYLCLLENFFPDVIQVHW 37 (96)
T ss_pred ccCCCEEEEEEEEEEeCCCeEEEE
Confidence 34677899999999665543 67
No 346
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=87.39 E-value=1.6 Score=25.47 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=18.9
Q ss_pred CCCCeEEEEEEeeeCCCcE--EEE--cCee
Q psy12134 67 APDMRAEIICNVYANPPAK--RFD--EGTR 92 (139)
Q Consensus 67 ~~g~~~~l~C~~~~~p~~~--~~~--~~~~ 92 (139)
..+..+.|.|.+.++.|.. +.| ++..
T Consensus 14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~ 43 (102)
T cd05768 14 SLQETATLTCLVKGFSPSDIFVKWLQNGQP 43 (102)
T ss_pred CcCCceEEEEEEeeEeCCCCEEEEEECCEE
Confidence 3478899999999976654 477 4443
No 347
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=87.15 E-value=3.5 Score=22.72 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=13.5
Q ss_pred EEEEEEeeeC-CCcEEEE
Q psy12134 72 AEIICNVYAN-PPAKRFD 88 (139)
Q Consensus 72 ~~l~C~~~~~-p~~~~~~ 88 (139)
+.|.|.+.+. |.+.+.|
T Consensus 2 ~~L~C~~~~~~P~~~v~W 19 (82)
T cd05761 2 VELTCTSSGSKPAATIRW 19 (82)
T ss_pred EEEEEEecCcCcCCeEEE
Confidence 5789999765 7778888
No 348
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=85.17 E-value=1.7 Score=25.07 Aligned_cols=19 Identities=0% Similarity=-0.106 Sum_probs=16.9
Q ss_pred ecceEEEEecCCCCceeEE
Q psy12134 94 DEGTVTAKVLQPFSERTLS 112 (139)
Q Consensus 94 ~~~~l~i~~~~~~d~g~y~ 112 (139)
.+.+|.|.+++.+|+|.|.
T Consensus 58 ~d~sI~i~nvt~~D~G~Y~ 76 (96)
T cd05889 58 EDMSLSFNNATEEDVGLYC 76 (96)
T ss_pred CccEEEEcCCCcccCEEEE
Confidence 5678999999999999993
No 349
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=83.79 E-value=1.9 Score=24.97 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=18.9
Q ss_pred eecceEEEEecCCCCceeE--EEEc
Q psy12134 93 FDEGTVTAKVLQPFSERTL--SVQD 115 (139)
Q Consensus 93 ~~~~~l~i~~~~~~d~g~y--~~~n 115 (139)
..+.+|.|.+++.+|+|.| ...+
T Consensus 60 ~~daSi~i~nl~~~D~G~Y~C~v~t 84 (99)
T cd05886 60 FEDGTISLSRLELEDEGVYICEFAT 84 (99)
T ss_pred CCcceEEEcCCccccCEEEEEEEEe
Confidence 3567899999999999999 4444
No 350
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=82.19 E-value=1.8 Score=25.02 Aligned_cols=29 Identities=7% Similarity=-0.051 Sum_probs=21.1
Q ss_pred eecceEEEEecCCCCceeEEE---EcccCCCC
Q psy12134 93 FDEGTVTAKVLQPFSERTLSV---QDKIGPGP 121 (139)
Q Consensus 93 ~~~~~l~i~~~~~~d~g~y~~---~n~~g~~~ 121 (139)
..+.+|.|.++..+|.|.|.| ....|+-+
T Consensus 57 ~~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~ 88 (96)
T cd05887 57 LLDATIMLENVGFSDIGVYICKAVTFPLGNTQ 88 (96)
T ss_pred CCccEEEEeCCCccccEEEEEEEEeCCCCCee
Confidence 346789999999999999933 33445443
No 351
>PHA03269 envelope glycoprotein C; Provisional
Probab=81.96 E-value=12 Score=28.38 Aligned_cols=71 Identities=15% Similarity=0.121 Sum_probs=49.7
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCC-C-ceeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeC-CCcE--EEE
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIG-E-STSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYAN-PPAK--RFD 88 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~-~-~~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~--~~~ 88 (139)
-.|.|..++..++|.|.=++.+... . .....+.+.+..+|.+.+... .+.+|+...-.|.+... |+.. +.|
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~--PVL~Ge~YkAtC~vA~YYPp~SvrlrW 364 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD--PVLLGNPYAAYCKVNKYYPPHSVIVKW 364 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEE
Confidence 4589999999999999877654332 1 134667777777886665443 45589999999998765 4433 367
No 352
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=81.29 E-value=2.6 Score=24.27 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=17.6
Q ss_pred eeCCCCeEEEEEEeeeC-CCcE--EEE
Q psy12134 65 HTAPDMRAEIICNVYAN-PPAK--RFD 88 (139)
Q Consensus 65 ~~~~g~~~~l~C~~~~~-p~~~--~~~ 88 (139)
.+..++.++|.|.+.+. -|+. +.|
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W 36 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTW 36 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEE
Confidence 44458899999999998 4433 467
No 353
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=81.15 E-value=9.1 Score=22.67 Aligned_cols=74 Identities=9% Similarity=-0.004 Sum_probs=37.6
Q ss_pred eeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeCCCcE--EEEc-Cee--------------eecceEEEEecCCCC
Q psy12134 45 KNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAK--RFDE-GTR--------------FDEGTVTAKVLQPFS 107 (139)
Q Consensus 45 ~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~--~~~~-~~~--------------~~~~~l~i~~~~~~d 107 (139)
..-.+.+...|....++.... .-..+.+.-+....+... ..|+ +.. ..+-.|.|+.++++|
T Consensus 5 ~~~VvgiSG~pl~LrP~~~Qt--k~~sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qD 82 (108)
T PF11465_consen 5 ADHVVGISGKPLQLRPSNIQT--KVYSVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQD 82 (108)
T ss_dssp EEEEEEETTS-EEE--SS-----SSEEEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG
T ss_pred ccceEEccCCEEEECCCCccc--eeEEEEEEEEcccCCceEEEEEEcCCCcccccccccceEeeeccCceEEEeecCccc
Confidence 333445555564444332211 224556555555444443 3452 222 123479999999999
Q ss_pred ceeE--EEEcccCCC
Q psy12134 108 ERTL--SVQDKIGPG 120 (139)
Q Consensus 108 ~g~y--~~~n~~g~~ 120 (139)
+|.| +.++.-|..
T Consensus 83 SG~Y~LEvT~~sG~V 97 (108)
T PF11465_consen 83 SGLYCLEVTNESGKV 97 (108)
T ss_dssp -EEEEEEEEETTSCE
T ss_pred CceEEEEEEcCCCcE
Confidence 9999 778876654
No 354
>COG5475 Uncharacterized small protein [Function unknown]
Probab=80.04 E-value=6.4 Score=20.25 Aligned_cols=26 Identities=15% Similarity=0.369 Sum_probs=18.6
Q ss_pred CCeEEEcccCCCCCEEEEEEEEcCCCCc
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASNNIGES 42 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~ 42 (139)
+..+++...+ ..|.|.|+..+..|..
T Consensus 17 GP~Mtvs~~s--s~Gmy~C~Wf~g~g~~ 42 (60)
T COG5475 17 GPRMTVSGYS--SDGMYECRWFDGYGVK 42 (60)
T ss_pred CceEEEeccc--cCCeEEEEEecCCCcc
Confidence 4566666554 3399999999988753
No 355
>PHA03271 envelope glycoprotein C; Provisional
Probab=79.87 E-value=13 Score=27.60 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=45.7
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEEEec-CCeEEecCceEeeCCCCeEEEEEEeeeC-CCcE--EEE
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIY-PPEVSVEKQWIHTAPDMRAEIICNVYAN-PPAK--RFD 88 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~--~~~ 88 (139)
-.|.|.++.-.++|.|+-...+..... ....+.+.+.+ +|.+.+.+. .+.+|+...-.|.+... |+.. +.|
T Consensus 207 m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrW 282 (490)
T PHA03271 207 MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSW 282 (490)
T ss_pred eeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEE
Confidence 568899999999997765555544332 34455555555 444554433 34579999999998765 4433 367
No 356
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=77.78 E-value=5.2 Score=23.19 Aligned_cols=24 Identities=8% Similarity=-0.014 Sum_probs=15.2
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCC
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNI 39 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~ 39 (139)
+.+.+..-...|.-.++|++.++.
T Consensus 61 S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 61 SEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred EEEEEEeCHHHCCcEEEEEEeCcc
Confidence 455553333445558999998864
No 357
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=76.81 E-value=7.1 Score=28.78 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=26.9
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEecCCeEE
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS 58 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~~p~~~ 58 (139)
-.+.+.+++.+|.|.|+|........ +-.-.+.|..-|.+.
T Consensus 81 Ysf~~~Nvs~sdEGrYrCIFYLn~~E--tyrH~I~vrVmPKId 121 (500)
T PHA02914 81 YSFIEENIGEHEDGDFKCIFYLGDNE--SHKHEILVRKAPKID 121 (500)
T ss_pred eEEEecCcccccCCcEEEEEEeCCce--eEEEEEEEEEcccee
Confidence 45778899999999999998754433 233334444444443
No 358
>PHA03273 envelope glycoprotein C; Provisional
Probab=75.30 E-value=33 Score=25.91 Aligned_cols=70 Identities=19% Similarity=0.219 Sum_probs=47.8
Q ss_pred eEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEEEecCCeEEecCceEeeCCCCeEEEEEEeeeC-CCcE--EEE
Q psy12134 17 SLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYAN-PPAK--RFD 88 (139)
Q Consensus 17 ~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~--~~~ 88 (139)
.|.|..++...+|.|+=++.+..+.. ....+++....+|.+.+.+. .+.+|+...-.|.+... |+.. +.|
T Consensus 199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rW 272 (486)
T PHA03273 199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRW 272 (486)
T ss_pred ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEE
Confidence 48999999999999987765654431 23444444467787765543 44589999999998765 4333 367
No 359
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=74.88 E-value=75 Score=29.85 Aligned_cols=97 Identities=12% Similarity=-0.058 Sum_probs=60.6
Q ss_pred cCCCCCEEEEEE--EEcCCCCceeeeEEEEEecCCe-EEecCceEeeCCCCeEEEEEEeeeCCCcEEEEcCe---ee-e-
Q psy12134 23 VTLKLAGLYQCI--ASNNIGESTSKNFIVNVIYPPE-VSVEKQWIHTAPDMRAEIICNVYANPPAKRFDEGT---RF-D- 94 (139)
Q Consensus 23 v~~~d~G~Y~C~--~~n~~~~~~s~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~~~---~~-~- 94 (139)
.+..+.|.|+-. |.|..+. .+.+..+.|+.+.. +........+..|+.++|.+...+.+...+.|.-. .. .
T Consensus 1834 ~Tf~~aG~ytV~L~AsN~vs~-~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t 1912 (2740)
T TIGR00864 1834 MTFPDAGTFAIRLNASNAVSG-KSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQ 1912 (2740)
T ss_pred EecCCCeEEEEEEEEEcccCc-ceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeec
Confidence 456789999775 6788866 46777788887653 33333334556899999999998887766777321 11 0
Q ss_pred cceEEEEecCCCCceeE----EEEcccCCCCC
Q psy12134 95 EGTVTAKVLQPFSERTL----SVQDKIGPGPD 122 (139)
Q Consensus 95 ~~~l~i~~~~~~d~g~y----~~~n~~g~~~~ 122 (139)
.+. . -.=.....|.| .+.|.++..+.
T Consensus 1913 ~~~-t-~~HsY~~~G~Y~VtV~A~N~Vs~~~a 1942 (2740)
T TIGR00864 1913 PGP-R-FSHSFPRVDDHMVNLRAKNEVSCAQA 1942 (2740)
T ss_pred CCC-e-EEeecCCCCcEEEEEEEEeccceeee
Confidence 111 0 01123345677 78888888554
No 360
>PHA02935 Hypothetical protein; Provisional
Probab=73.61 E-value=24 Score=23.54 Aligned_cols=48 Identities=8% Similarity=0.228 Sum_probs=28.7
Q ss_pred EEEECCEEeeec--C-----------------CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEE
Q psy12134 3 VIFFSKIELLYN--R-----------------ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN 50 (139)
Q Consensus 3 ~W~~~~~~~~~~--~-----------------~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~ 50 (139)
.|+++++.+... + .-|.|..+.-+|+|.|.-......|........+.
T Consensus 70 swyyndkvialatedrtsgyissfikrvnisltclnisslryedsgsykgvshlkdgvivtttmnis 136 (349)
T PHA02935 70 SWYYNDKVIALATEDRTSGYISSFIKRVNISLTCLNISSLRYEDSGSYKGVSHLKDGVIVTTTMNIS 136 (349)
T ss_pred eeeecCEEEEEeeccccccHHHHHHhhheeeEEEeeccceeeccCCcccCchhhcCceEEEEEEEEE
Confidence 599998775331 0 23456677788999997665545555333333333
No 361
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=72.73 E-value=4.4 Score=24.34 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=18.7
Q ss_pred CeEEEcccCCCCCEEEEEEEE
Q psy12134 16 ESLDLDRVTLKLAGLYQCIAS 36 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~ 36 (139)
-.|.|.+++.+|++.|.|...
T Consensus 74 v~L~l~~L~a~DTa~Y~Ca~e 94 (115)
T cd05721 74 VNFTLQNLRANQTDIYFCKIE 94 (115)
T ss_pred EEEEEcCCCHHHCeEEEEEee
Confidence 568899999999999999864
No 362
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=69.52 E-value=11 Score=21.87 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=16.9
Q ss_pred eeCCCCeEEEEEEeeeCC-Cc--EEEE
Q psy12134 65 HTAPDMRAEIICNVYANP-PA--KRFD 88 (139)
Q Consensus 65 ~~~~g~~~~l~C~~~~~p-~~--~~~~ 88 (139)
....+..+.|.|.+.+.- +. .+.|
T Consensus 15 ~l~~~~~atLtClV~~f~~P~~i~V~W 41 (99)
T cd04986 15 DLLLGSSASLTCTLSGLRDPEGAVFTW 41 (99)
T ss_pred HhCcCCccEEEEEEeccCCCCCeEEEE
Confidence 333578899999999865 43 3467
No 363
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=66.55 E-value=24 Score=20.64 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=14.3
Q ss_pred CCCCeEEEEEEeeeCCCc
Q psy12134 67 APDMRAEIICNVYANPPA 84 (139)
Q Consensus 67 ~~g~~~~l~C~~~~~p~~ 84 (139)
..|..+++.|.+.+..|.
T Consensus 13 ~~G~~vtv~C~v~~v~P~ 30 (99)
T cd07689 13 EEGKPVTVKCEVPDVYPF 30 (99)
T ss_pred cCCceEEEEEEecCcccC
Confidence 579999999999865443
No 364
>PHA03376 BARF1; Provisional
Probab=65.55 E-value=15 Score=24.42 Aligned_cols=26 Identities=8% Similarity=-0.027 Sum_probs=19.7
Q ss_pred ceEEEEecCCCCceeEEEEcccCCCC
Q psy12134 96 GTVTAKVLQPFSERTLSVQDKIGPGP 121 (139)
Q Consensus 96 ~~l~i~~~~~~d~g~y~~~n~~g~~~ 121 (139)
-.|.|.+++.+|.|+|.|.-+-|.-.
T Consensus 87 vsLvI~~l~lSDdGtY~C~fQkge~~ 112 (221)
T PHA03376 87 FFLVVTAANISHDGNYLCRMKLGETE 112 (221)
T ss_pred EEEEEEeeeecCCceEEEEEEcCCCc
Confidence 36889999999999996655555433
No 365
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=63.47 E-value=39 Score=25.17 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=21.5
Q ss_pred CeEEEcccCCCCCEEEEEEEEcC
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNN 38 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~ 38 (139)
++|+|..++...+|-|+|++...
T Consensus 346 STLTIkka~I~N~GCY~~~a~~g 368 (500)
T PHA02914 346 STLTIKKAHINNAGCYEAQAFMG 368 (500)
T ss_pred ceEEeeeEEEEcCCceEEEEecC
Confidence 89999999999999999999865
No 366
>KOG4597|consensus
Probab=61.45 E-value=9.2 Score=28.83 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=29.3
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~ 52 (139)
.-|.|.+-.+.|+|.|+|.+.+..|. .-..+.+.+.
T Consensus 257 cql~ic~ewq~~a~w~tCs~rcg~g~-~~rdv~c~s~ 292 (560)
T KOG4597|consen 257 CQLVICNEWQADAGWYTCSARCGAGF-LRRDVPCSSV 292 (560)
T ss_pred eeEEEcchhhcCCCceeeccccccce-eeccceeeee
Confidence 56889999999999999999999887 4556666553
No 367
>PHA03273 envelope glycoprotein C; Provisional
Probab=61.08 E-value=47 Score=25.15 Aligned_cols=79 Identities=16% Similarity=0.117 Sum_probs=40.6
Q ss_pred eEEEECCEEeee-c----------------CCeEEEcccCC-CCCEEEEEEEEc-CCCCc---eeeeEEEEEecCCeEEe
Q psy12134 2 LVIFFSKIELLY-N----------------RESLDLDRVTL-KLAGLYQCIASN-NIGES---TSKNFIVNVIYPPEVSV 59 (139)
Q Consensus 2 ~~W~~~~~~~~~-~----------------~~~L~i~~v~~-~d~G~Y~C~~~n-~~~~~---~s~~~~l~v~~~p~~~~ 59 (139)
++||+|+.++.. . .+.|.+..... ..-=+.+|.+.= ..+.. .++...-.|..+|.++.
T Consensus 270 ~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~ 349 (486)
T PHA03273 270 LRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSV 349 (486)
T ss_pred EEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEE
Confidence 789999988762 1 13444444322 222378998742 22211 13344445667776654
Q ss_pred cCceEeeCCCCeEEEEEEeeeCCC--cEEEE
Q psy12134 60 EKQWIHTAPDMRAEIICNVYANPP--AKRFD 88 (139)
Q Consensus 60 ~~~~~~~~~g~~~~l~C~~~~~p~--~~~~~ 88 (139)
.- +.....|.+..-|. ..+.|
T Consensus 350 ~F--------~~G~AVCtA~CVP~egV~l~W 372 (486)
T PHA03273 350 TV--------EDGDAVCTAKCVPSTGVFVSW 372 (486)
T ss_pred EE--------eCCEEEEecccccCCCeeEEE
Confidence 21 22233467666654 34456
No 368
>PHA03282 envelope glycoprotein E; Provisional
Probab=58.72 E-value=32 Score=26.07 Aligned_cols=39 Identities=15% Similarity=0.087 Sum_probs=27.2
Q ss_pred cCCeEEEcccCCCCCEEEEEEEEcCCCCc-eeeeEEEEEe
Q psy12134 14 NRESLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVI 52 (139)
Q Consensus 14 ~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~-~s~~~~l~v~ 52 (139)
.+.+|.|.++..+|+|.|+-.+...-... ....+.|.|.
T Consensus 122 ~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 122 VNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred ecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 35679999999999999998865433222 3445666664
No 369
>PHA03052 Hypothetical protein; Provisional
Probab=57.09 E-value=27 Score=18.84 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=18.6
Q ss_pred ceEeeCCCCeEEEEEEeeeCCCc---EEEE
Q psy12134 62 QWIHTAPDMRAEIICNVYANPPA---KRFD 88 (139)
Q Consensus 62 ~~~~~~~g~~~~l~C~~~~~p~~---~~~~ 88 (139)
....+..|++..+.|.+.-.++. .++|
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W 34 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFW 34 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEE
Confidence 33456679999999998644432 3477
No 370
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=56.62 E-value=40 Score=21.61 Aligned_cols=34 Identities=12% Similarity=0.074 Sum_probs=23.7
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEE
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN 50 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~ 50 (139)
-.|.|++.+.+|+|.|.-++.-.. ....+-+.+.
T Consensus 124 ~lL~i~~p~~~dsG~Y~lRV~l~~-~~~~d~F~~~ 157 (161)
T PF01688_consen 124 VLLRIRNPRPEDSGIYYLRVWLDG-ANKADVFRLS 157 (161)
T ss_pred eEEEeCCCCcccceEEEEEEEECC-CCCCcEEEEe
Confidence 458999999999999999886432 2234444443
No 371
>KOG1480|consensus
Probab=47.83 E-value=1.8 Score=34.34 Aligned_cols=104 Identities=11% Similarity=0.106 Sum_probs=65.1
Q ss_pred EEEEE--EEcCCCCceeeeEEEEEecC-CeEEecCceEeeCCCCeEEEEEEe-eeCCCcEEEE--cCee---------ee
Q psy12134 30 LYQCI--ASNNIGESTSKNFIVNVIYP-PEVSVEKQWIHTAPDMRAEIICNV-YANPPAKRFD--EGTR---------FD 94 (139)
Q Consensus 30 ~Y~C~--~~n~~~~~~s~~~~l~v~~~-p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~~--~~~~---------~~ 94 (139)
-|+|+ +....|...+....+...|. ..+...+....+.++..+.+.|.. .+.|.....| ++.. ..
T Consensus 102 d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~ 181 (909)
T KOG1480|consen 102 DYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRAS 181 (909)
T ss_pred ceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhh
Confidence 57665 44444432233333222222 223344444566677888888875 4556666666 2221 24
Q ss_pred cceEEEEecCCCCceeE--EEEcccCCCCCCCCcceeeeeC
Q psy12134 95 EGTVTAKVLQPFSERTL--SVQDKIGPGPDSNLRPSAYMAD 133 (139)
Q Consensus 95 ~~~l~i~~~~~~d~g~y--~~~n~~g~~~~~~~~~~~~~~~ 133 (139)
...+.+..++..|.|.| .+.|-.+....-...+..|++.
T Consensus 182 d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv~g 222 (909)
T KOG1480|consen 182 DHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYVNG 222 (909)
T ss_pred cCCccccchhhhhcccceeeeehhhccccccceEEEEEEcC
Confidence 46788889999999999 8899888888878888888765
No 372
>PHA03282 envelope glycoprotein E; Provisional
Probab=46.79 E-value=24 Score=26.74 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=19.2
Q ss_pred CeEEEcccCCCCCEEEEEEEE
Q psy12134 16 ESLDLDRVTLKLAGLYQCIAS 36 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~ 36 (139)
-.|++.+....++|.|.|.+.
T Consensus 333 VdL~F~nAp~saSGLYVfVl~ 353 (540)
T PHA03282 333 VNLQLRDASEASGGLYVCVVY 353 (540)
T ss_pred cceEecCCCcccCceEEEEEE
Confidence 479999999999999999986
No 373
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=46.20 E-value=6.7 Score=29.32 Aligned_cols=39 Identities=21% Similarity=0.223 Sum_probs=0.0
Q ss_pred CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY 53 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~ 53 (139)
.+.|.|.+++.+|+|.|+=...+..+......+.|.|..
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~ 126 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKG 126 (439)
T ss_dssp ---------------------------------------
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence 467999999999999999988776655445556666654
No 374
>PHA03189 UL14 tegument protein; Provisional
Probab=45.71 E-value=48 Score=23.70 Aligned_cols=18 Identities=39% Similarity=0.846 Sum_probs=14.9
Q ss_pred ccCCCCCEEEEEEEEcCC
Q psy12134 22 RVTLKLAGLYQCIASNNI 39 (139)
Q Consensus 22 ~v~~~d~G~Y~C~~~n~~ 39 (139)
++..+-+|.|.|.+.|..
T Consensus 139 ~v~t~taG~Y~CvLrN~t 156 (348)
T PHA03189 139 RVSTSTAGMYECVLRNET 156 (348)
T ss_pred EEEecccceEEEEecccc
Confidence 566677999999998875
No 375
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=45.14 E-value=55 Score=18.22 Aligned_cols=37 Identities=14% Similarity=-0.004 Sum_probs=24.6
Q ss_pred eEEEECCEEeee--cCCeEEEcccCCCCCEEEEEEEEcCCCC
Q psy12134 2 LVIFFSKIELLY--NRESLDLDRVTLKLAGLYQCIASNNIGE 41 (139)
Q Consensus 2 ~~W~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~~~n~~~~ 41 (139)
+.||-||..+.. ....+.+ .....|.|+-.+....|.
T Consensus 45 ~~W~vdg~~~g~~~~~~~~~~---~~~~~G~h~l~vvD~~G~ 83 (89)
T PF06832_consen 45 VYWFVDGEPLGTTQPGHQLFW---QPDRPGEHTLTVVDAQGR 83 (89)
T ss_pred EEEEECCEEcccCCCCCeEEe---CCCCCeeEEEEEEcCCCC
Confidence 689999988833 2344443 234679998888766665
No 376
>PHA03286 envelope glycoprotein E; Provisional
Probab=45.05 E-value=71 Score=24.21 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=31.9
Q ss_pred CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~ 52 (139)
++.|.|.+.+..++|.|+-...|..+....+.+.+.|.
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~ 163 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVS 163 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence 47899999999999999999988776666677777774
No 377
>PHA03283 envelope glycoprotein E; Provisional
Probab=44.83 E-value=86 Score=24.22 Aligned_cols=39 Identities=28% Similarity=0.353 Sum_probs=31.0
Q ss_pred cCCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY 53 (139)
Q Consensus 14 ~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~ 53 (139)
..+.|.|.+++.+++|.|+-...+..+. ....+.|.|..
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~~-~~~vflvtVk~ 170 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGMM-KHSVFFVTVKK 170 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCce-EEEEEEEEecC
Confidence 3578999999999999999988875553 56667777765
No 378
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=43.54 E-value=53 Score=17.65 Aligned_cols=33 Identities=12% Similarity=0.354 Sum_probs=21.9
Q ss_pred eEEEECCEEe-eecCCeEEEcccCCCCCEEEEEEEEcC
Q psy12134 2 LVIFFSKIEL-LYNRESLDLDRVTLKLAGLYQCIASNN 38 (139)
Q Consensus 2 ~~W~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~~~n~ 38 (139)
+.||-||..+ ......+.+.. -.++|+|.-...
T Consensus 13 iswYcN~TRLlRlt~~Tlt~~~----ltcNFtCV~qSG 46 (71)
T PF11049_consen 13 ISWYCNGTRLLRLTQQTLTVVT----LTCNFTCVGQSG 46 (71)
T ss_pred ccEEECCceeeeecCCeEeeee----eeEEeeecCCCC
Confidence 5799888654 44555666533 468999987543
No 379
>PHA03286 envelope glycoprotein E; Provisional
Probab=43.42 E-value=29 Score=26.08 Aligned_cols=20 Identities=35% Similarity=0.409 Sum_probs=18.5
Q ss_pred eEEEcccCCCCCEEEEEEEE
Q psy12134 17 SLDLDRVTLKLAGLYQCIAS 36 (139)
Q Consensus 17 ~L~i~~v~~~d~G~Y~C~~~ 36 (139)
.|.+.+....++|.|.|.+.
T Consensus 308 nL~f~nA~~s~SGLYVfVl~ 327 (492)
T PHA03286 308 SFRLANAQPTDAGLYVVVAL 327 (492)
T ss_pred ceeecCCCcccCceEEEEEE
Confidence 58899999999999999986
No 380
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=41.34 E-value=40 Score=25.35 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=17.1
Q ss_pred CCeEEEcccCCCCCEEEEEEEE
Q psy12134 15 RESLDLDRVTLKLAGLYQCIAS 36 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~ 36 (139)
.-.|++.+....++|.|.|.+.
T Consensus 268 ~~~l~f~~a~~~~sGLYv~V~~ 289 (439)
T PF02480_consen 268 GVDLQFTNAPESASGLYVFVVY 289 (439)
T ss_dssp SSSEEESS--GGG-EEEEEEEE
T ss_pred CcceEecCCCcccCceEEEEEE
Confidence 4679999999999999999986
No 381
>PHA03290 envelope glycoprotein I; Provisional
Probab=41.19 E-value=96 Score=22.51 Aligned_cols=37 Identities=11% Similarity=0.234 Sum_probs=26.2
Q ss_pred CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~ 52 (139)
+-.|.|.+...+|+|.|.-++.-.. ...++-+.+.+.
T Consensus 128 ~vLL~I~~P~~~DSGiY~LRV~Ldg-a~~sDvF~lsv~ 164 (357)
T PHA03290 128 EIIFKINKPGIEDAGIYLLLVQLDH-SRLFDGFFLGLN 164 (357)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeCC-CcccceEEEEEE
Confidence 3568899999999999999987432 223455555554
No 382
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=40.31 E-value=3e+02 Score=26.47 Aligned_cols=96 Identities=11% Similarity=0.079 Sum_probs=57.8
Q ss_pred cCCCCCEEEEE--EEEcCCCCceeeeEEEEEecCC-eEEecCceEeeCCCCeEEEEEEeeeCCCcEEEEc---Ceee--e
Q psy12134 23 VTLKLAGLYQC--IASNNIGESTSKNFIVNVIYPP-EVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDE---GTRF--D 94 (139)
Q Consensus 23 v~~~d~G~Y~C--~~~n~~~~~~s~~~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~~---~~~~--~ 94 (139)
++-.+.|.|.- .++|..|. ......+.|.++- .+....+...+..+..+.|.-...+.....+.|. +... .
T Consensus 1664 vt~~~pG~Y~VtL~aSN~vG~-~t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s 1742 (2740)
T TIGR00864 1664 LNPLEAGPCDIFLQAANLLGQ-ATADCTIDFLEPAGNLMLQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETS 1742 (2740)
T ss_pred EecCCCceEEEEEEEeecccc-eeeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccC
Confidence 34567788865 46788877 4666666666532 2222223334456889999888788788888883 2111 1
Q ss_pred cceEEEEecCCCCceeE----EEEcccCCCCC
Q psy12134 95 EGTVTAKVLQPFSERTL----SVQDKIGPGPD 122 (139)
Q Consensus 95 ~~~l~i~~~~~~d~g~y----~~~n~~g~~~~ 122 (139)
...+ .-.....|.| .|.|.+|+...
T Consensus 1743 ~p~~---tHtf~~~G~y~VtVta~N~vss~~~ 1771 (2740)
T TIGR00864 1743 EPFM---SHSFPSAGLHLVTMKAFNELGSANA 1771 (2740)
T ss_pred CCce---EEEccCCceEEEEEEEEccccccce
Confidence 1111 1124567888 78898887764
No 383
>PF11327 DUF3129: Protein of unknown function (DUF3129); InterPro: IPR021476 This eukaryotic family of proteins has no known function.
Probab=36.01 E-value=73 Score=20.88 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=17.6
Q ss_pred eEEEcccCCCCCEEEEEEEEcC
Q psy12134 17 SLDLDRVTLKLAGLYQCIASNN 38 (139)
Q Consensus 17 ~L~i~~v~~~d~G~Y~C~~~n~ 38 (139)
.+++++|..+-+|.|+|.....
T Consensus 94 ~mt~hQVN~DGaGP~~C~iD~t 115 (184)
T PF11327_consen 94 SMTIHQVNADGAGPFTCDIDET 115 (184)
T ss_pred EEEEEEecCCCCcCeEEEECCC
Confidence 3567888888899999998643
No 384
>KOG4597|consensus
Probab=35.13 E-value=42 Score=25.55 Aligned_cols=60 Identities=7% Similarity=-0.194 Sum_probs=42.5
Q ss_pred ceEeeCCCCeEEEEEEeeeCCCcEEEE-----cCeee--------------ecceEEEEecCCCCceeE--EEEcccCCC
Q psy12134 62 QWIHTAPDMRAEIICNVYANPPAKRFD-----EGTRF--------------DEGTVTAKVLQPFSERTL--SVQDKIGPG 120 (139)
Q Consensus 62 ~~~~~~~g~~~~l~C~~~~~p~~~~~~-----~~~~~--------------~~~~l~i~~~~~~d~g~y--~~~n~~g~~ 120 (139)
..+.+..+++..+.|-+.|.+.+.++| |+.+. ....|.|-+....|.|-| ++.+..|-.
T Consensus 204 a~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~ 283 (560)
T KOG4597|consen 204 AEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFL 283 (560)
T ss_pred chhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecccccccee
Confidence 345666789999999999999999988 33221 234567777778888888 666665544
Q ss_pred C
Q psy12134 121 P 121 (139)
Q Consensus 121 ~ 121 (139)
.
T Consensus 284 ~ 284 (560)
T KOG4597|consen 284 R 284 (560)
T ss_pred e
Confidence 4
No 385
>PHA03289 envelope glycoprotein I; Provisional
Probab=33.59 E-value=1.4e+02 Score=21.67 Aligned_cols=35 Identities=20% Similarity=0.110 Sum_probs=24.7
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
-.|.|++...+|+|.|.-++.-... ...+-+.+.+
T Consensus 122 vLL~I~~Pr~~DSGiYyLRV~Ldga-~~sDvF~lsv 156 (352)
T PHA03289 122 LLLTIIEPRMSDTGIYYIRVSLAGR-NKSDIFRTSV 156 (352)
T ss_pred eEEEeCCCCcccCeeEEEEEEeCCC-ccCceEEEEE
Confidence 5688999999999999998874322 2345555554
No 386
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=31.78 E-value=45 Score=17.38 Aligned_cols=52 Identities=13% Similarity=0.038 Sum_probs=28.4
Q ss_pred eeCCCCeEEEEEEeeeCCCcEEEEcCee----eecceEEEEecCCCCceeE----EEEcccCC
Q psy12134 65 HTAPDMRAEIICNVYANPPAKRFDEGTR----FDEGTVTAKVLQPFSERTL----SVQDKIGP 119 (139)
Q Consensus 65 ~~~~g~~~~l~C~~~~~p~~~~~~~~~~----~~~~~l~i~~~~~~d~g~y----~~~n~~g~ 119 (139)
.+..|..+.|...........+.|+-.. ....... -.....|.| .+.|..|.
T Consensus 7 ~~~~g~~v~f~~~~~~g~~~~y~W~fgd~~~~~~~~~~t---~ty~~~G~y~V~ltv~n~~g~ 66 (69)
T PF00801_consen 7 YVPTGQPVTFTASSSDGSPVTYSWDFGDNGTVSTGSSVT---HTYSSPGTYTVTLTVTNGVGS 66 (69)
T ss_dssp CEBTTSEEEEEETTTTSSECEEEEE-SSESEEECSSEEE---EEESSSEEEEEEEEEEETTSE
T ss_pred EEcCCCEEEEEEEccCCCCeEEEEEECCCCccccCCCEE---EEcCCCeEEEEEEEEEECCCC
Confidence 3456888888888843344556773221 1122221 223457888 56776654
No 387
>PHA03283 envelope glycoprotein E; Provisional
Probab=31.48 E-value=58 Score=25.09 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.6
Q ss_pred CCeEEEcccCCCCCEEEEEEEE
Q psy12134 15 RESLDLDRVTLKLAGLYQCIAS 36 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~ 36 (139)
+-.|.+.++..+++|.|.|.+.
T Consensus 314 ~v~L~f~nap~~~SGLYVfVv~ 335 (542)
T PHA03283 314 RVDLLFKNAPASASGLYVFVLL 335 (542)
T ss_pred CcceEeccCCcccCceEEEEEE
Confidence 3678999999999999999986
No 388
>PHA03292 envelope glycoprotein I; Provisional
Probab=30.46 E-value=1.5e+02 Score=22.03 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=25.0
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEE
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v 51 (139)
..|.|++...+|+|.|.-++.-.... ..+-|.|.+
T Consensus 128 vLL~I~~P~~~DSGiY~LRV~Ldga~-~aDvF~lsv 162 (413)
T PHA03292 128 VLLNITGPQPADSGAYILRVKLDHAP-TADVFGLSA 162 (413)
T ss_pred eEEEeCCCCcccceeEEEEEEeCCCc-cCceeEEEE
Confidence 56889999999999999998743222 345555554
No 389
>PHA03291 envelope glycoprotein I; Provisional
Probab=29.82 E-value=1.8e+02 Score=21.39 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=25.6
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEe
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~ 52 (139)
-.|.|++...+|+|.|.-++.-.. ....+-|.|.+.
T Consensus 129 vLL~i~~P~~~DsGiYvLRV~vdg-at~adlF~lg~~ 164 (401)
T PHA03291 129 PLLRARGAARAVVGLYVLRVWVEG-ATNASLFPLGLA 164 (401)
T ss_pred eEEEecCCCcccceeEEEEEEeCC-CcccceEEEeee
Confidence 568899999999999999986432 223455555555
No 390
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=26.16 E-value=1.4e+02 Score=17.15 Aligned_cols=52 Identities=13% Similarity=0.049 Sum_probs=29.7
Q ss_pred EEecCceEeeCCCCeEEEEEEeeeCCCcEEEE----cCeee----ecceEEEEecCCCCce
Q psy12134 57 VSVEKQWIHTAPDMRAEIICNVYANPPAKRFD----EGTRF----DEGTVTAKVLQPFSER 109 (139)
Q Consensus 57 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~~----~~~~~----~~~~l~i~~~~~~d~g 109 (139)
+.+.+....+..|..+.+.|...-..+....| .+... .-..+.+.+++. |.-
T Consensus 6 v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~k~~~~~g~~W~~f~LsnV~~-ds~ 65 (91)
T PF03921_consen 6 VRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLSKTELDSGPQWKAFQLSNVTE-DSS 65 (91)
T ss_dssp EEEESSEEEEETTEEEEEEEEESSSS-SEEEEESSSEEEEEEEETTEEEEEEEEE-S-CEE
T ss_pred EEEECCccEECCCCCEEEEEcCCCCCCCcceEEEecCCcccCCCCcEEEEEEEcccc-CCe
Confidence 34455566778899999999987544444434 12111 123566777775 443
No 391
>PHA03240 envelope glycoprotein M; Provisional
Probab=24.16 E-value=66 Score=21.76 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=19.9
Q ss_pred CeEEEcccCCCCCEEEEEEEEcCCCC
Q psy12134 16 ESLDLDRVTLKLAGLYQCIASNNIGE 41 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~~n~~~~ 41 (139)
++|.|.++..+|.|+|.-+.....|.
T Consensus 105 stL~i~~vn~sd~~nYcr~k~~~~g~ 130 (258)
T PHA03240 105 STLIIAHLNLSDAGEYCRKKCPPKGD 130 (258)
T ss_pred ceEEEEEEeecCcchhhhccCCCCCC
Confidence 78999999999999996555444444
No 392
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=23.51 E-value=1.2e+02 Score=15.44 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=18.5
Q ss_pred CCeEEEcccCC---CCCEEEEEEEEcCCCC
Q psy12134 15 RESLDLDRVTL---KLAGLYQCIASNNIGE 41 (139)
Q Consensus 15 ~~~L~i~~v~~---~d~G~Y~C~~~n~~~~ 41 (139)
+..+++..+.. .+.+.|.|+..+..+.
T Consensus 13 Gp~MTV~~v~~~~~~~~~~v~C~WFd~~~~ 42 (53)
T PF09926_consen 13 GPRMTVTEVGPNAGASGGWVECQWFDGHGE 42 (53)
T ss_pred CCCeEEEEccccccCCCCeEEEEeCCCCCc
Confidence 45677766644 3668999999776544
No 393
>PHA03281 envelope glycoprotein E; Provisional
Probab=22.13 E-value=3.1e+02 Score=21.66 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=27.9
Q ss_pred CCeEEEcccCCCCCEEEEEEEEcCCCCceeeeEEEEEec
Q psy12134 15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY 53 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~v~~ 53 (139)
.+.|.|.+.+..++|.|+-......|...-..+.+.|..
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg 335 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKG 335 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecC
Confidence 578999999999999999877654444322355566654
No 394
>PHA03281 envelope glycoprotein E; Provisional
Probab=21.21 E-value=1.1e+02 Score=23.85 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.5
Q ss_pred CCeEEEcccCCCCCEEEEEEEE
Q psy12134 15 RESLDLDRVTLKLAGLYQCIAS 36 (139)
Q Consensus 15 ~~~L~i~~v~~~d~G~Y~C~~~ 36 (139)
...|.+.+...+++|.|.|.+.
T Consensus 474 ~vdL~F~nApasaSGLYVfVl~ 495 (642)
T PHA03281 474 GSALKFVDAAESLSGLYVFIIH 495 (642)
T ss_pred CcceEeccCCcccCceEEEEEE
Confidence 4568999999999999999986
No 395
>PF11088 RL11D: Glycoprotein encoding membrane proteins RL5A and RL6; InterPro: IPR024349 This entry represents RL5A and RL6 from human herpesvirus 5. RL5A and RL6 are members of the RL11 family, which are predicted to encode membrane glycoproteins [].
Probab=20.04 E-value=68 Score=18.57 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=16.8
Q ss_pred CeEEEcccCCCCCEEEEEEE
Q psy12134 16 ESLDLDRVTLKLAGLYQCIA 35 (139)
Q Consensus 16 ~~L~i~~v~~~d~G~Y~C~~ 35 (139)
..|.|.+++..+.|.|--.-
T Consensus 60 tsL~lCN~T~g~eg~ydl~r 79 (98)
T PF11088_consen 60 TSLTLCNMTQGNEGVYDLGR 79 (98)
T ss_pred CcEEEEeeeccCcccEeeee
Confidence 67999999999999997644
Done!