RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12134
(139 letters)
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 60.1 bits (146), Expect = 3e-12
Identities = 15/77 (19%), Positives = 32/77 (41%)
Query: 7 SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHT 66
++ + N + L + V G+Y C A+N +G + + V P+++ +
Sbjct: 53 TRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKI 112
Query: 67 APDMRAEIICNVYANPP 83
++A + C NP
Sbjct: 113 IEGLKAVLPCTTMGNPK 129
Score = 35.5 bits (82), Expect = 0.002
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
SL + V + AG Y+C+A N++G + SK + V
Sbjct: 154 SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV 188
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 60.7 bits (147), Expect = 6e-12
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 7 SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY-PPEVSVEKQWIH 65
+++L + +L L VT G Y+C N + S I+NV+Y P + ++ + +
Sbjct: 333 PRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTY 392
Query: 66 TAPDMRAEIICNVYANPPAK 85
P + + C+ +NPPA+
Sbjct: 393 YRPGVNLSLSCHAASNPPAQ 412
Score = 56.1 bits (135), Expect = 2e-10
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 7 SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE-VSVEKQWIH 65
+++L +L L VT A Y C N++ + S ++V+Y P+ +
Sbjct: 511 PRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSS 570
Query: 66 TAPDMRAEIICNVYANPPAK 85
+ C+ +NP +
Sbjct: 571 YLSGANLNLSCHSASNPSPQ 590
Score = 54.6 bits (131), Expect = 7e-10
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 7 SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHT 66
+++L +L L VT Y+C N + S + I+NV+Y P+ +
Sbjct: 155 PRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTS 214
Query: 67 A-PDMRAEIICNVYANPPA 84
+ C+ +NPPA
Sbjct: 215 YRSGENLNLSCHAASNPPA 233
Score = 44.9 bits (106), Expect = 2e-06
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 3/77 (3%)
Query: 10 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGE---STSKNFIVNVIYPPEVSVEKQWIHT 66
+ + + L + +T K +GLY C A+N+ +T K V+ P
Sbjct: 420 NIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPV 479
Query: 67 APDMRAEIICNVYANPP 83
C A
Sbjct: 480 EDKDAVAFTCEPEAQNT 496
Score = 41.5 bits (97), Expect = 3e-05
Identities = 12/80 (15%), Positives = 19/80 (23%), Gaps = 2/80 (2%)
Query: 6 FSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIG--ESTSKNFIVNVIYPPEVSVEKQW 63
+S E++Y SL + + G Y + E + F V P
Sbjct: 61 YSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNS 120
Query: 64 IHTAPDMRAEIICNVYANPP 83
C
Sbjct: 121 KPVEDKDAVAFTCEPETQDA 140
Score = 38.4 bits (89), Expect = 3e-04
Identities = 10/77 (12%), Positives = 22/77 (28%), Gaps = 3/77 (3%)
Query: 10 ELLYNRESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNVIYPPE--VSVEKQWIHT 66
+ + L + +T+ +G Y C A N+ + + + V P
Sbjct: 242 TFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPV 301
Query: 67 APDMRAEIICNVYANPP 83
+ + C
Sbjct: 302 EDEDAVALTCEPEIQNT 318
Score = 36.5 bits (84), Expect = 0.001
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 11 LLYNRESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNV 51
+ + L + ++T G Y C SN + S + V
Sbjct: 599 PQQHTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITV 640
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 54.8 bits (132), Expect = 3e-10
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 7 SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHT 66
K L + L + + G Y C A+N GE K + V P + ++ + T
Sbjct: 49 EKYILKGSNTELTVRNIINSDGGPYVCRATNKAGE-DEKQAFLQVFVQPHI-IQLKNETT 106
Query: 67 APDMRAEIICNVYANPP 83
+ + ++C+ P
Sbjct: 107 YENGQVTLVCDAEGEPI 123
Score = 34.4 bits (79), Expect = 0.005
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 9 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
++ + SL + V L +G Y C A++ IG K+ +++
Sbjct: 150 VKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG-GHQKSMYLDI 191
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 55.4 bits (133), Expect = 4e-10
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 7/69 (10%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
L L R+ G Y + SN+ + + F V V P + + + + C
Sbjct: 376 ELHLTRLKGTEGGTYTFLVSNSDV-NAAIAFNVYVNTKP------EILTYDRLVNGMLQC 428
Query: 77 NVYANPPAK 85
P
Sbjct: 429 VAAGFPEPT 437
Score = 50.4 bits (120), Expect = 2e-08
Identities = 11/70 (15%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQW---IHTAPDMRAE 73
+L + + +G++ C A+N G S + + V+ +++ + +
Sbjct: 274 TLTISSARVNDSGVFMCYANNTFG-SANVTTTLEVVDKGFINIFPMINTTVFVNDGENVD 332
Query: 74 IICNVYANPP 83
+I A P
Sbjct: 333 LIVEYEAFPK 342
Score = 47.4 bits (112), Expect = 3e-07
Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
++ G Y C + + S V V P ++ + + ++ D + C
Sbjct: 81 EWITEKAEATNTGKYTCTNKHGLSNSIY----VFVRDPAKLFLVDRSLYGKEDNDTLVRC 136
Query: 77 NVYANPPAKRF 87
+ +P +
Sbjct: 137 PL-TDPEVTNY 146
Score = 42.3 bits (99), Expect = 1e-05
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 62
+D K G +C A N++G+ TS F + +
Sbjct: 475 QSSIDSSAFKHNGTVECKAYNDVGK-TSAYFNFAFKGNNKEQIHPH 519
Score = 40.8 bits (95), Expect = 5e-05
Identities = 11/60 (18%), Positives = 15/60 (25%), Gaps = 4/60 (6%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVIY----PPEVSVEKQWIHTAPDMRAEIICNVYANPP 83
C S+ FI+ V P VSV K + C +
Sbjct: 181 RLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSS 240
Score = 26.9 bits (59), Expect = 2.4
Identities = 8/55 (14%), Positives = 14/55 (25%), Gaps = 5/55 (9%)
Query: 28 AGLYQCI----ASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNV 78
A + C+ G S PP + K + ++C
Sbjct: 7 AWDFLCVLLLLLRVQTGSSQPS-VSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTD 60
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 54.0 bits (130), Expect = 4e-10
Identities = 15/67 (22%), Positives = 24/67 (35%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
L L V AG Y C + S+ + V P +VE + + P+ ++ C
Sbjct: 61 FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSC 120
Query: 77 NVYANPP 83
P
Sbjct: 121 EAVGPPE 127
Score = 36.7 bits (85), Expect = 0.001
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 20 LDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
L+ + + ++ C A N G ++S+ V++
Sbjct: 150 LNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 53.6 bits (129), Expect = 5e-10
Identities = 12/69 (17%), Positives = 28/69 (40%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
L + ++ AG+Y+C A++ G++ ++ + AE++C
Sbjct: 59 RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVC 118
Query: 77 NVYANPPAK 85
V ++P
Sbjct: 119 RVSSSPAPA 127
Score = 30.5 bits (69), Expect = 0.10
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNV 51
+L + + G+Y+C E ++ IV V
Sbjct: 152 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 187
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 54.6 bits (131), Expect = 6e-10
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI----YPPEVSVEKQWIHTAPD 69
+ R + YQC A + S + + V PP +++ +
Sbjct: 142 PWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRG 201
Query: 70 MRAEIICNVYANPP 83
A+I+C+ +
Sbjct: 202 EAAQIVCSASSVDV 215
Score = 41.1 bits (96), Expect = 4e-05
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 62
+L+LD+V + AG Y C+ASN G S + V+ S
Sbjct: 243 KVLTLNLDQVDFQHAGNYSCVASNVQG-KHSTSMFFRVVESAGNSHHHH 290
Score = 40.7 bits (95), Expect = 4e-05
Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 2/68 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK-QWIHTAPDMRAEII 75
L + T + G Y+C + S + V P Q + D A +
Sbjct: 52 ILSTNNATFQNTGTYRCTEPGDPL-GGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLP 110
Query: 76 CNVYANPP 83
C +
Sbjct: 111 CLLTDPVL 118
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 53.0 bits (127), Expect = 1e-09
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFI-VNVIYPPEVSVEKQWIHTAPDMRAEII 75
+ VT + G Y C+ S G S + + + V+ PP RA +
Sbjct: 69 GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLT 128
Query: 76 CNVY-ANPP 83
C+ +PP
Sbjct: 129 CSEQDGSPP 137
Score = 32.2 bits (73), Expect = 0.032
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSK 45
L D ++ G Y C A N G +
Sbjct: 172 ELVFDPLSASDTGEYSCEARNGYGTPMTS 200
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 52.7 bits (126), Expect = 1e-09
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
+ + G Y C+ + + + + PP V K H A ++C
Sbjct: 50 KTEFKVDSDDQWGEYSCVFLPEPMGTAN----IQLHGPPRVKAVKSSEHINEGETAMLVC 105
Query: 77 NVYANPPA 84
+ PP
Sbjct: 106 KSESVPPV 113
Score = 34.2 bits (78), Expect = 0.006
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 14 NRESLDLDRVTLKL-AGLYQCIASNNIGESTSKNFIVNVIY 53
R L ++ + ++ G Y+C +++ G S + V
Sbjct: 144 GRSELHIENLNMEADPGQYRCNGTSSKG-SDQAIITLRVRS 183
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 52.5 bits (126), Expect = 2e-09
Identities = 12/69 (17%), Positives = 25/69 (36%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
+L + + AG+Y+C+ + G + V + A I+C
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122
Query: 77 NVYANPPAK 85
+V ++ P
Sbjct: 123 DVVSSLPPT 131
Score = 32.5 bits (74), Expect = 0.028
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNV 51
L + + G Y+C E K+ V V
Sbjct: 156 YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 53.4 bits (128), Expect = 2e-09
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 4/77 (5%)
Query: 11 LLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI----YPPEVSVEKQWIHT 66
+ + + + Y C N ESTS + V PP++ +E +
Sbjct: 139 FFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVR 198
Query: 67 APDMRAEIICNVYANPP 83
A+I+C+
Sbjct: 199 IRGEAAQIVCSATNAEV 215
Score = 41.1 bits (96), Expect = 3e-05
Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 2/68 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK-QWIHTAPDMRAEII 75
+L T K G Y+C + + S + V P Q + A +
Sbjct: 52 TLTTRNATFKNTGTYRCTELEDPM-AGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLP 110
Query: 76 CNVYANPP 83
C +
Sbjct: 111 CLITDPAL 118
Score = 36.5 bits (84), Expect = 0.001
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE 60
+L L+ V + AG+Y C+ASN++G + + V+
Sbjct: 246 ALSLNAVDFQDAGIYSCVASNDVG-TRTATMNFQVVESHHHHHH 288
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 52.7 bits (126), Expect = 2e-09
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 7 SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 56
++ L N L +D + + AG YQC SN + S + +++I+ P
Sbjct: 154 ERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPH 203
Score = 33.1 bits (75), Expect = 0.015
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 10 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
E++Y+ SL +T+K G+Y ++ T +V P
Sbjct: 65 EIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPV 110
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 52.6 bits (126), Expect = 3e-09
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP-DMRAEII 75
L + G+Y C N +G+ + + V+ P+ + + + I
Sbjct: 271 RLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIP 330
Query: 76 CNVYANPPAK 85
C V P
Sbjct: 331 CKVTGLPAPN 340
Score = 48.8 bits (116), Expect = 9e-08
Identities = 13/67 (19%), Positives = 20/67 (29%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
SL R G YQC A G ++S+ Y + ++ C
Sbjct: 63 SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDC 122
Query: 77 NVYANPP 83
+ P
Sbjct: 123 VLPNAYP 129
Score = 34.1 bits (78), Expect = 0.010
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSK 45
L + V G Y C A+N G+ +
Sbjct: 361 GLVIKGVKNGDKGYYGCRATNEHGDKYFE 389
Score = 33.3 bits (76), Expect = 0.014
Identities = 9/66 (13%), Positives = 14/66 (21%), Gaps = 10/66 (15%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVIY----------PPEVSVEKQWIHTAPDMRAEIICN 77
Y C A N + + P + + I C
Sbjct: 176 IYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCM 235
Query: 78 VYANPP 83
+NP
Sbjct: 236 YGSNPM 241
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 51.5 bits (123), Expect = 4e-09
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFI-VNVIYPPEVSVEKQWIHTAPDMRAEII 75
+ VT K G Y C+ S G++ + I + V+ PP RA +
Sbjct: 66 GITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLT 125
Query: 76 CNVY-ANPP 83
C+ + +PP
Sbjct: 126 CSEHDGSPP 134
Score = 35.3 bits (81), Expect = 0.003
Identities = 11/42 (26%), Positives = 13/42 (30%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS 58
L D VT +G Y C A N G + V
Sbjct: 170 DLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNVG 211
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 52.5 bits (125), Expect = 4e-09
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGE---STSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 73
++L +L+ G Y C+A + + + V P ++ + T+ E
Sbjct: 626 IMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIE 685
Query: 74 IICNVYANPPAK 85
+ C NPP +
Sbjct: 686 VSCTASGNPPPQ 697
Score = 49.8 bits (118), Expect = 4e-08
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVIYPPEV---SVEKQWIHTAPDMRA 72
L + V+ + G Y I +N I + S + V PP++ S+
Sbjct: 382 VLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQ 441
Query: 73 EIICNVYANPP 83
+ C VYA PP
Sbjct: 442 TLTCTVYAIPP 452
Score = 49.4 bits (117), Expect = 5e-08
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 73
N+ L ++ LY+C A N +G + +V PE++++ +
Sbjct: 511 NKTVSTLVIQAANVSALYKCEAVNKVGRG-ERVISFHVTRGPEITLQPD-MQPTEQESVS 568
Query: 74 IICNVYANPP 83
+ C +
Sbjct: 569 LWCTADRSTF 578
Score = 45.5 bits (107), Expect = 1e-06
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE---KQWIHTAPDMRAE 73
+L +D VT GLY C AS+ + + V V P V+ + + R
Sbjct: 291 TLTIDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVHEKPFVAFGSGMESLVEATVGERVR 349
Query: 74 IICNVYANPP 83
I PP
Sbjct: 350 IPAKYLGYPP 359
Score = 42.4 bits (99), Expect = 1e-05
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 3/73 (4%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---PPEVSVEKQWIHTAPDM 70
+++ + + AG+ C A N S +IV V+ V I +
Sbjct: 181 SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGE 240
Query: 71 RAEIICNVYANPP 83
+ + C
Sbjct: 241 KLVLNCTARTELN 253
Score = 42.4 bits (99), Expect = 2e-05
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 7 SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV-SVEKQWIH 65
S I L +L + RV + GLY C A + +G + + + E ++E+ H
Sbjct: 711 SGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVE-AFFIIEGAQEKTNLERTHHH 769
Query: 66 T 66
Sbjct: 770 H 770
Score = 39.4 bits (91), Expect = 2e-04
Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 12/106 (11%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ----WIHTAPDMRA 72
+L + +V G Y+C S ++ + P SV Q +I +
Sbjct: 87 TLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTV 146
Query: 73 EIICNVYANPP----AKRFDEGTRFDEGTVTAKVLQPFSERTLSVQ 114
I C + R+ E +G + S++ ++
Sbjct: 147 VIPCLGSISNLNVSLCARYPEKRFVPDG----NRISWDSKKGFTIP 188
Score = 36.7 bits (84), Expect = 0.001
Identities = 9/88 (10%), Positives = 28/88 (31%), Gaps = 4/88 (4%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRF 87
L+ C+ + + P +S++K + + +I C +
Sbjct: 9 VALWLCVETRAASVGLPSVSLD----LPRLSIQKDILTIKANTTLQITCRGQRDLDWLWP 64
Query: 88 DEGTRFDEGTVTAKVLQPFSERTLSVQD 115
+ + ++ + +TL++
Sbjct: 65 NNQSGSEQRVEVTECSDGLFCKTLTIPK 92
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 52.1 bits (125), Expect = 5e-09
Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 67
++ + + L++ ++++ +G Y C A N G ++S + + V PP + + T
Sbjct: 339 RMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS-STSLKVKEPPVFRKKPHPVETL 397
Query: 68 PDMRAEIICNVYANPPAK 85
+ C + PP +
Sbjct: 398 KGADVHLECELQGTPPFQ 415
Score = 49.8 bits (119), Expect = 3e-08
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 67
K+ L+ N +L + +VT AG Y C ASN G+ + + V PP + +
Sbjct: 245 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCS-AQLGVQEPPRFIKKLEPSRIV 303
Query: 68 -PDMRAEIICNVYANPPAK 85
D C + +P K
Sbjct: 304 KQDEHTRYECKIGGSPEIK 322
Score = 47.1 bits (112), Expect = 3e-07
Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 7/114 (6%)
Query: 7 SKIELLYN--RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWI 64
K +++ S+ + V G YQC ASN++G + + + PP + I
Sbjct: 429 KKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS-DTCVGSITLKAPPRFVKKLSDI 487
Query: 65 HTAPDMRAEIICNVYANPPAK---RFDEGTRFDEGTVTAKVLQPFSERTLSVQD 115
T ++ + P D + + + TL
Sbjct: 488 STVVGEEVQLQATIEGAEPISVAWFKD-KGEIVRESDNIWISYSENIATLQFSR 540
Score = 44.0 bits (104), Expect = 4e-06
Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 7 SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---PPEVSVEKQW 63
K++ N SL +++V G Y C A N++G S + ++ + PP + + +
Sbjct: 52 YKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVAS-SAVLVIKERKLPPSFARKLKD 110
Query: 64 IHTAPDMRAEIICNVYANPPAK 85
+H C + + P +
Sbjct: 111 VHETLGFPVAFECRINGSEPLQ 132
Score = 40.6 bits (95), Expect = 5e-05
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI---YPPEVSVEKQWI 64
+ ++N +L + + G Y C ASN +G ++S + + + PP ++ +
Sbjct: 149 QTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASS-SAKLTLSEHEVPPFFDLKPVSV 207
Query: 65 HTAPDMRAEIICNVYANPP 83
A C+V P
Sbjct: 208 DLALGESGTFKCHVTGTAP 226
Score = 32.9 bits (75), Expect = 0.028
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52
N +L R AG Y C N G ++V+
Sbjct: 532 NIATLQFSRAEPANAGKYTCQIKNEAGTQ-ECFATLSVL 569
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 52.4 bits (125), Expect = 5e-09
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 9/72 (12%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 73
N S+ G Y A N+ +K F +N+ P+V E ++
Sbjct: 376 NGYSISKFCNHKHQPGEYIFHAENDDA-QFTKMFTLNIRRKPQVLAE--------ASASQ 426
Query: 74 IICNVYANPPAK 85
C P
Sbjct: 427 ASCFSDGYPLPS 438
Score = 50.1 bits (119), Expect = 3e-08
Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPP 83
+C A N +G ++ F +++ P+ ++ + + I C
Sbjct: 203 GTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQ--LFLKVGEPLWIRCKAVHVNH 256
Score = 48.2 bits (114), Expect = 1e-07
Identities = 9/71 (12%), Positives = 19/71 (26%), Gaps = 6/71 (8%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV--EKQWIHTAPDMRAEI 74
+ V G Y C +S + +S V ++ ++ +
Sbjct: 291 FAFVSSVARNDTGYYTCSSSKHPSQSAL----VTIVEKGFINATNSSEDYEIDQYEEFCF 346
Query: 75 ICNVYANPPAK 85
A P +
Sbjct: 347 SVRFKAYPQIR 357
Score = 45.1 bits (106), Expect = 2e-06
Identities = 9/67 (13%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
S+ + ++T AG Y + + + F V++ ++ + + + + ++C
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEAT-NYTILFTVSIRNTLLYTLRRPYFRKMEN-QDALVC 161
Query: 77 NVYANPP 83
+ P
Sbjct: 162 ISESVPE 168
Score = 37.4 bits (86), Expect = 6e-04
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV---SVEKQWIH 65
S L+ L +C A N++G ++ + ++N P K H
Sbjct: 475 SSTLNMSEAIKGFLVKCCAYNSLG-TSCETILLNSPGPFPFIQDGGTKHHHH 525
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 51.0 bits (122), Expect = 1e-08
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Query: 12 LYNRESLDLDRVTLKLAGLYQCIASNNIG-ESTSKNFIVNVIYPPEVSVEKQWIHTA--P 68
+ + L + + G Y+C E K+ V V PP V + ++
Sbjct: 151 VLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANL 210
Query: 69 DMRAEIICNVYANPP 83
++C+ P
Sbjct: 211 GQSVTLVCDADGFPE 225
Score = 47.2 bits (112), Expect = 3e-07
Identities = 12/67 (17%), Positives = 25/67 (37%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
+L + + AG+Y+C+ + G + V + A I+C
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122
Query: 77 NVYANPP 83
+V ++ P
Sbjct: 123 DVVSSLP 129
Score = 32.2 bits (73), Expect = 0.036
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52
L + V Y CIA N G + + V
Sbjct: 255 ELTIRNVDKNDEAEYVCIAENKAG-EQDASIHLKVF 289
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 50.3 bits (120), Expect = 1e-08
Identities = 13/67 (19%), Positives = 21/67 (31%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
L + + L G YQC+ S+ V + P E + A + + C
Sbjct: 69 QLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSC 128
Query: 77 NVYANPP 83
P
Sbjct: 129 QAQGPPE 135
Score = 39.1 bits (91), Expect = 1e-04
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVIYPPE 56
+ C A N G +TS+ + V+ P +
Sbjct: 168 TSSFSCEAHNAKGVTTSRTATITVL-PQQ 195
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 50.5 bits (120), Expect = 2e-08
Identities = 11/60 (18%), Positives = 16/60 (26%), Gaps = 2/60 (3%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVIY--PPEVSVEKQWIHTAPDMRAEIICNVYANPPAK 85
Y C + E S + V + VSV ++C V N
Sbjct: 153 DRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVN 212
Score = 38.9 bits (90), Expect = 2e-04
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 7/75 (9%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP------EVSVEKQWIHTAPDM 70
L L +T G Y C +++ G T + + + P E+ +I
Sbjct: 52 VLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEIT 111
Query: 71 RAEIICNVYANPPAK 85
I C V +P
Sbjct: 112 EITIPCRV-TDPQLV 125
Score = 37.0 bits (85), Expect = 0.001
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 15 RESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVIYPPEVSV 59
R L + L+ +G Y C + ++ + K + V+
Sbjct: 241 RSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGHHHH 286
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 50.5 bits (121), Expect = 2e-08
Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 67
++ + + L++ ++++ +G Y C A N G ++S + + V PP + + T
Sbjct: 147 RMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASS-STSLKVKEPPVFRKKPHPVETL 205
Query: 68 PDMRAEIICNVYANPPAK 85
+ C + PP +
Sbjct: 206 KGADVHLECELQGTPPFQ 223
Score = 46.3 bits (110), Expect = 5e-07
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 67
K+ L+ N +L + +VT AG Y C ASN G+ S + + V PP + +
Sbjct: 53 KMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK-DSCSAQLGVQEPPRFIKKLEPSRIV 111
Query: 68 -PDMRAEIICNVYANPP 83
D C + +P
Sbjct: 112 KQDEHTRYECKIGGSPE 128
Score = 34.3 bits (79), Expect = 0.007
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
S+ + V G YQC ASN++G T + +
Sbjct: 246 FLTSIHILNVDSADIGEYQCKASNDVGSYTC-VGSITL 282
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 50.5 bits (120), Expect = 2e-08
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
SL + + ++ G Y C+ S S + + V+ P+ + E Q + + C
Sbjct: 80 SLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARC 139
Query: 77 NV-YANPPAK 85
PPA+
Sbjct: 140 VSTGGRPPAQ 149
Score = 43.2 bits (101), Expect = 7e-06
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 28 AGLYQCIASNNIGEST-SKNFIVNVIYPPEVSVEKQWIHTAP-DMRAEIICNVYANPPAK 85
C + E + V YPPEVS+ + A + C+ +NP
Sbjct: 189 GKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPT 248
Query: 86 RF 87
+
Sbjct: 249 GY 250
Score = 36.2 bits (83), Expect = 0.001
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
L + V + C +N +G + V V
Sbjct: 269 QLLIRPVDKPINTTLICNVTNALG-ARQAELTVQV 302
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 50.2 bits (120), Expect = 2e-08
Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPD------M 70
+L + R+ +G+Y+C A N T V ++ P + + ++ +
Sbjct: 178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGK 237
Query: 71 RAEIICNVYANPP 83
A + C V PP
Sbjct: 238 DAVLECCVSGYPP 250
Score = 47.9 bits (114), Expect = 1e-07
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
+L + VT +G Y C+ + + S + + V+ PP ++ M E C
Sbjct: 276 NLLISNVTDDDSGTYTCVVTYKNE-NISASAELTVLVPPWFLNHPSNLYAYESMDIEFEC 334
Query: 77 NVYANPP 83
V P
Sbjct: 335 AVSGKPV 341
Score = 45.6 bits (108), Expect = 9e-07
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNI-GESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEII 75
++ R GLYQC AS G S+ V V P + + I +
Sbjct: 83 NILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLK 142
Query: 76 CNVYANPP 83
C V +P
Sbjct: 143 CEVIGDPM 150
Score = 34.8 bits (80), Expect = 0.005
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 12 LYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP 54
+ +L + V G YQC+A N G + + + V P
Sbjct: 361 IVGGSNLRILGVVKSDEGFYQCVAENEAG-NAQSSAQLIVPKP 402
Score = 25.6 bits (56), Expect = 6.2
Identities = 4/50 (8%), Positives = 12/50 (24%), Gaps = 1/50 (2%)
Query: 35 ASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPA 84
+ + S+ + E T + C+ ++
Sbjct: 3 WGSELE-SSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGV 51
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 49.9 bits (119), Expect = 3e-08
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 10 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV---IYPPEVSVEKQWIHT 66
+ ++ L ++ V + G+YQC N+ + + + + + PP + Q
Sbjct: 383 AIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEA-SAELKLGGRFDPPVIRQAFQEETM 441
Query: 67 APDMRAEIICNVYANPPAK 85
P + C NP +
Sbjct: 442 EPGPSVFLKCVAGGNPTPE 460
Score = 49.5 bits (118), Expect = 5e-08
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 2/73 (2%)
Query: 17 SLDLDRVTLKL-AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK-QWIHTAPDMRAEI 74
+L ++ V Y C+A N G S + V V+ P + + +
Sbjct: 580 TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTL 639
Query: 75 ICNVYANPPAKRF 87
C+V
Sbjct: 640 HCSVPGGDLPLNI 652
Score = 49.2 bits (117), Expect = 7e-08
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
+L + ++ +G Y C+ +N++G + + ++ V P ++ A C
Sbjct: 307 TLIIKDAVVEDSGKYLCVVNNSVGGESVE-TVLTVTAPLSAKIDPPTQTVDFGRPAVFTC 365
Query: 77 NVYANPPAK 85
NP
Sbjct: 366 QYTGNPIKT 374
Score = 49.2 bits (117), Expect = 7e-08
Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 6/101 (5%)
Query: 21 DRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNV-- 78
D A +Y C+A N G S++ V + + H A I C +
Sbjct: 105 DYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPS 164
Query: 79 -YANPPAK---RFDEGTRFDEGTVTAKVLQPFSERTLSVQD 115
A+ DE + G L +++
Sbjct: 165 FVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIRE 205
Score = 46.5 bits (110), Expect = 5e-07
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
L ++ V AG + C A N G +NV PP +E A A++ C
Sbjct: 678 VLTIEAVEASHAGNFTCHARNLAGHQQFT-TPLNVYVPPRWILEPTDKAFAQGSDAKVEC 736
Query: 77 NVYANPP 83
P
Sbjct: 737 KADGFPK 743
Score = 42.2 bits (99), Expect = 1e-05
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 14/73 (19%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR----- 71
L++ V GLY+CIA + +G + + +NV P +I
Sbjct: 491 YLNITSVHANDGGLYKCIAKSKVGVAEH-SAKLNVYGLP-------YIRQMEKKAIVAGE 542
Query: 72 -AEIICNVYANPP 83
+ C V P
Sbjct: 543 TLIVTCPVAGYPI 555
Score = 41.1 bits (96), Expect = 3e-05
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
+L +D + G Y C A N IG S +++V
Sbjct: 774 TLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHH 812
Score = 39.1 bits (91), Expect = 2e-04
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 2/70 (2%)
Query: 18 LDLDRVTLKLAGLYQCIASNNIGEST-SKNFIVNVIYPPEVSVE-KQWIHTAPDMRAEII 75
+++ LK L+ +A G T + N P E I + AEI
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 76 CNVYANPPAK 85
C NP +
Sbjct: 61 CKASGNPMPE 70
Score = 33.8 bits (77), Expect = 0.014
Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 10/66 (15%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVI---------YPPEVSVEKQWIHTAPDM-RAEIICN 77
YQC + + T + + P VS+ K + T ++C
Sbjct: 212 YKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCP 271
Query: 78 VYANPP 83
P
Sbjct: 272 AQGYPV 277
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 49.4 bits (118), Expect = 4e-08
Identities = 12/67 (17%), Positives = 28/67 (41%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
L + ++ AG+Y+C A++ G++ ++ + AE++C
Sbjct: 61 RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVC 120
Query: 77 NVYANPP 83
V ++P
Sbjct: 121 RVSSSPA 127
Score = 45.6 bits (108), Expect = 9e-07
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Query: 7 SKIELLYNRESLDLDRVTLKLAGLYQCIASNN-IGESTSKNFIVNVIYPPEVS-VEKQWI 64
++ +L N +L + + G+Y+C GE ++ IV V PP +S +K +
Sbjct: 145 NRFAMLANN-NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFN 203
Query: 65 HTAPD-MRAEIICNVYANPP 83
TA C +P
Sbjct: 204 ATAERGEEMTFSCRASGSPE 223
Score = 40.2 bits (94), Expect = 6e-05
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 7 SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 56
K L + L + + G Y C A+N GE + V
Sbjct: 239 EKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK-QAFLQVFVQHH 287
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 49.5 bits (118), Expect = 5e-08
Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 4 IFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQW 63
+ K + ++L + V+ + +G Y C+ASN +G S V V P E +
Sbjct: 263 LPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMG-SIRHTISVRVKAAPYWLDEPKN 321
Query: 64 IHTAPDMRAEIICNVYANPP 83
+ AP ++C NP
Sbjct: 322 LILAPGEDGRLVCRANGNPK 341
Score = 41.8 bits (98), Expect = 2e-05
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 62
G YQC A N G + S + V P E
Sbjct: 89 EGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENL 123
Score = 35.2 bits (81), Expect = 0.003
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52
++ + +YQC SN G + F V+V+
Sbjct: 368 TIIFRDTQISSRAVYQCNTSNEHGYLLANAF-VSVL 402
Score = 30.6 bits (69), Expect = 0.13
Identities = 9/68 (13%), Positives = 15/68 (22%), Gaps = 12/68 (17%)
Query: 28 AGLYQCIASNNIGEST--SKNFIVNVIYPPEVSVEK----------QWIHTAPDMRAEII 75
Y C A + + F + V+ V+ M +
Sbjct: 184 QTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLE 243
Query: 76 CNVYANPP 83
C P
Sbjct: 244 CIASGVPT 251
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 49.4 bits (117), Expect = 5e-08
Identities = 22/136 (16%), Positives = 41/136 (30%), Gaps = 17/136 (12%)
Query: 18 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV------------SVEKQWIH 65
++ T + AG Y+C+ G S + V PP + Q
Sbjct: 225 FNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNA 284
Query: 66 TAPDMRAEIIC-NVYANPPAKRFDEGTRFDEGTVTAKVLQPFSERTLSVQ----DKIGPG 120
+ + I+ V + +++ D + L P +E +SV + G G
Sbjct: 285 NSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTG 344
Query: 121 PDSNLRPSAYMADAPP 136
+ P
Sbjct: 345 SPGPALRTRTKCADPM 360
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 49.1 bits (117), Expect = 5e-08
Identities = 12/67 (17%), Positives = 19/67 (28%), Gaps = 1/67 (1%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
L + V + G Y+C A N G T + + + P+ C
Sbjct: 258 LLHIQNVDFEDEGTYECEAENIKGRDTYQ-GRIIIHAQPDWLDVITDTEADIGSDLRWSC 316
Query: 77 NVYANPP 83
P
Sbjct: 317 VASGKPR 323
Score = 41.4 bits (97), Expect = 3e-05
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ-WIHTAPDMRAEIICNVYANPP 83
AG YQC+A+N G S+ + + E S E++ + C+ + P
Sbjct: 74 AGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYP 130
Score = 32.9 bits (75), Expect = 0.021
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFI 48
L ++ L+ +G+YQC+A N G + +
Sbjct: 347 ELRFSKLVLEDSGMYQCVAENKHGTVYASAEL 378
Score = 32.9 bits (75), Expect = 0.023
Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 11/78 (14%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGEST----SKNFIVNVIYPPEVSVEKQWIHTAP---- 68
+L + + G Y C A+++I T SK +++ P
Sbjct: 159 NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTY 218
Query: 69 ---DMRAEIICNVYANPP 83
+ C + NP
Sbjct: 219 ALTGQMVTLECFAFGNPV 236
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 48.3 bits (115), Expect = 6e-08
Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
+++ + +G Y C+ + + N + V P+++ K+ + A + C
Sbjct: 57 EYRINKPRAEDSGEYHCVY--HFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYC 114
Query: 77 NVYANPP 83
P
Sbjct: 115 KSVGYPH 121
Score = 30.2 bits (68), Expect = 0.13
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 8 KIELLYNRESLDLDRVTLKL-AGLYQCIASNNIGESTSKNFIVNV 51
I N L++ + + G Y+C A+N+IG S S + ++ V
Sbjct: 145 FIINKENYTELNIVNLQITEDPGEYECNATNSIG-SASVSTVLRV 188
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 49.2 bits (117), Expect = 6e-08
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
+L + ++ +G Y C+ +N++G S ++ V P ++ A C
Sbjct: 271 TLIIKDAVVEDSGKYLCVVNNSVG-GESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTC 329
Query: 77 NVYANPP 83
NP
Sbjct: 330 QYTGNPI 336
Score = 43.8 bits (103), Expect = 4e-06
Identities = 13/63 (20%), Positives = 21/63 (33%)
Query: 21 DRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYA 80
D A +Y C+A N G S++ V + + H A I C + +
Sbjct: 70 DYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPS 129
Query: 81 NPP 83
Sbjct: 130 FVA 132
Score = 34.5 bits (79), Expect = 0.006
Identities = 11/64 (17%), Positives = 18/64 (28%), Gaps = 9/64 (14%)
Query: 29 GLYQCIASNNIGEST--SKNFIVNVIYPPEVSVE-------KQWIHTAPDMRAEIICNVY 79
YQC + + T S VI P S ++ + ++C
Sbjct: 178 KSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQ 237
Query: 80 ANPP 83
P
Sbjct: 238 GFPA 241
Score = 33.8 bits (77), Expect = 0.013
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSK 45
+ L ++ V + G+YQC N+ + +
Sbjct: 351 SESVLRIESVKKEDKGMYQCFVRNDRESAEAS 382
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 48.3 bits (115), Expect = 1e-07
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 1/67 (1%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
L++ + AG Y+C+A N+ G + P IH A + C
Sbjct: 259 ILEIPNFQQEDAGSYECVAENSRG-KNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWEC 317
Query: 77 NVYANPP 83
P
Sbjct: 318 KANGRPK 324
Score = 43.7 bits (103), Expect = 5e-06
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ-WIHTAPDMRAEIICNVYANPP 83
AG YQCIA+N+ G S+ + Y + + ++C +
Sbjct: 75 AGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSG 131
Score = 34.0 bits (78), Expect = 0.009
Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 10/77 (12%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGE--STSKNFIVNVI-------YPPEVSVEK-QWIHT 66
+L + +V G Y C+ +N + + + Y P++ V+ + +
Sbjct: 158 NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPA 217
Query: 67 APDMRAEIICNVYANPP 83
++ C NP
Sbjct: 218 EKGTTVKLECFALGNPV 234
Score = 32.9 bits (75), Expect = 0.022
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52
+L++ V L AG+YQC+A N G S + ++VI
Sbjct: 348 TLNITIVNLSDAGMYQCVAENKHGVIFS-SAELSVI 382
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 44.6 bits (106), Expect = 3e-07
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
++ + V L+ G Y C N+ SK + +
Sbjct: 48 TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 46.7 bits (110), Expect = 4e-07
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP-DMRAEIICNVYANPPAKR 86
CI + ++ ++ +NV Y PEV++E + M ++ C ANPPA
Sbjct: 206 QQSLACIVNYHMD-RFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATE 264
Query: 87 F 87
+
Sbjct: 265 Y 265
Score = 45.5 bits (107), Expect = 9e-07
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 62
NR + LAG Y C A+N IG + S VN+ +
Sbjct: 282 NRTLFFKGPINYSLAGTYICEATNPIG-TRSGQVEVNITEAAALEHHHH 329
Score = 39.0 bits (90), Expect = 2e-04
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 6/75 (8%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE--- 73
++ L R+ L+ G+Y C + + + V+ P +E +
Sbjct: 93 TIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKV 152
Query: 74 --IICNV-YANPPAK 85
C PP+
Sbjct: 153 LVATCTSANGKPPSV 167
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 45.9 bits (109), Expect = 4e-07
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 17 SLDLDRVTLKLAGLYQCIASNN-IGESTSKNFIVNVIYPPEVSVEKQWIHT--APDMRAE 73
+L + + G+Y+C GE ++ IV V PP +S+ ++ +
Sbjct: 58 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMT 117
Query: 74 IICNVYANPP 83
C +P
Sbjct: 118 FSCRASGSPE 127
Score = 35.9 bits (83), Expect = 0.002
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 7 SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNV 51
K L + L + + G Y C A+N GE V V
Sbjct: 143 EKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 46.4 bits (109), Expect = 5e-07
Identities = 8/55 (14%), Positives = 16/55 (29%)
Query: 29 GLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPP 83
Y C + G+ ++ PP E + T ++ C +
Sbjct: 103 RRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKH 157
Score = 39.8 bits (92), Expect = 1e-04
Identities = 11/75 (14%), Positives = 22/75 (29%), Gaps = 10/75 (13%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQW---------IHTA 67
+L + L+ +G Y C + + +V+ V + I+
Sbjct: 183 NLIIHNPELEDSGRYDCYVHYDDV-RIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVT 241
Query: 68 PDMRAEIICNVYANP 82
A I C +
Sbjct: 242 IGEPANITCTAVSTS 256
Score = 28.3 bits (62), Expect = 0.76
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 13 YNRESLDLDRVTLKLAG-LYQCIASNNIGESTS 44
+L + VT + G Y C N + T
Sbjct: 290 ITEATLYFENVTEEYIGNTYTCRGHNYYFDKTL 322
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 45.3 bits (107), Expect = 7e-07
Identities = 9/49 (18%), Positives = 20/49 (40%)
Query: 7 SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
++ Y ++ + T++ +G Y C + S+ + VI P
Sbjct: 125 EALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173
Score = 32.6 bits (74), Expect = 0.021
Identities = 9/72 (12%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEII 75
SL++ + +G Y+C + S+ + V + ++ +
Sbjct: 51 SSLNIVNAKFEDSGEYKCQHQQV---NESEPVYLEVFSDW-LLLQASAEVVMEGQPLFLR 106
Query: 76 CNVYANPPAKRF 87
C+ + N +
Sbjct: 107 CHGWRNWDVYKV 118
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 45.6 bits (108), Expect = 9e-07
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 67
+++ + SL + V L +G Y C A++ IG K+ +++ Y P+ + ++
Sbjct: 55 EVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQTIYYSW 113
Query: 68 PDMRAEIICNVYANPPAK 85
I C+V +NPPA
Sbjct: 114 EGNPINISCDVKSNPPAS 131
Score = 34.0 bits (78), Expect = 0.008
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 56
K + L++ + G Y C A+N+IG + +I+ + P
Sbjct: 150 KTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQE-YILALADVPS 197
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 45.3 bits (107), Expect = 9e-07
Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 15/85 (17%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR-- 71
N L + V +K AG Y C +NN S+ ++V PE + ++
Sbjct: 63 NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQIC 122
Query: 72 -------------AEIICNVYANPP 83
+ C +P
Sbjct: 123 VEPTSQKLMPGSTLVLQCVAVGSPI 147
Score = 43.7 bits (103), Expect = 3e-06
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS 58
++ + V L+ G Y C N+ SK + + +
Sbjct: 163 TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLG 207
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 45.5 bits (107), Expect = 1e-06
Identities = 10/74 (13%), Positives = 18/74 (24%), Gaps = 4/74 (5%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI----YPPEVSVEKQWIHTAPD 69
+ +C A + S F + V P VSV +
Sbjct: 144 KAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKG 203
Query: 70 MRAEIICNVYANPP 83
++C +
Sbjct: 204 DTFTVVCTIKDVST 217
Score = 43.6 bits (102), Expect = 4e-06
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 73
+ ++ G Y C SN + S V V P ++ + + D A
Sbjct: 55 KKNEWIQEKAEATRTGTYTCSNSNGLTSSIY----VFVRDPAKLFLVGLPLFGKEDSDAL 110
Query: 74 IICNVYANPPA 84
+ C + +
Sbjct: 111 VRCPLTDPQVS 121
Score = 34.7 bits (79), Expect = 0.006
Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52
+L + + +G++ C A+N G S + + V+
Sbjct: 253 TLTISSARVDDSGVFMCYANNTFG-SANVTTTLKVV 287
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 44.3 bits (104), Expect = 2e-06
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 73
N L + + G Y C E T + ++V+ P +SV +
Sbjct: 65 NTFFLVVTAANISHDGNYLCRMKLGETEVTKQ-EHLSVVKPLTLSVHSERSQFPDFSVLT 123
Query: 74 IICNVYANPP 83
+ C V A P
Sbjct: 124 VTCTVNAFPH 133
Score = 30.0 bits (67), Expect = 0.18
Identities = 3/15 (20%), Positives = 6/15 (40%)
Query: 28 AGLYQCIASNNIGES 42
C+ N+ E+
Sbjct: 176 HLPVTCVGKNDKEEA 190
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 44.4 bits (104), Expect = 2e-06
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV---EKQWIHTAPDM 70
+++ + + AG+ C A N S +IV V+ V I +
Sbjct: 62 SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGE 121
Query: 71 RAEIICNVYANPPAK 85
+ + C
Sbjct: 122 KLVLNCTARTELNVG 136
Score = 37.5 bits (86), Expect = 5e-04
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
+L +D VT GLY C AS+ + + + V V P
Sbjct: 172 TLTIDGVTRSDQGLYTCAASSGLM-TKKNSTFVRVHEDP 209
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 44.2 bits (104), Expect = 3e-06
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 9 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI-----YPPEVSVEKQW 63
I+L + + SL ++ V G Y C+ N G + + ++V+ P +
Sbjct: 65 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS-IRQTYTLDVLERSPHRPILQAGLPAN 123
Query: 64 IHTAPDMRAEIICNVYANPP 83
E C VY++
Sbjct: 124 QTAVLGSDVEFHCKVYSDAQ 143
Score = 40.7 bits (95), Expect = 5e-05
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 12 LYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE 60
+ L L V+ + G Y C A+N IG K F ++V P E
Sbjct: 178 VEADVRLRLANVSERDGGEYLCRATNFIG-VAEKAFWLSVHGPRAAEEE 225
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 44.2 bits (104), Expect = 3e-06
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE 60
E L L VT + AG Y C+A N+IG S + + V+ E VE
Sbjct: 289 ELEVLSLHNVTFEDAGEYTCLAGNSIGFSHH-SAWLVVLPAEEELVE 334
Score = 43.8 bits (103), Expect = 4e-06
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 9 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI-----YPPEVSVEKQW 63
I+L + + SL ++ V G Y C+ N G S + + ++V+ P +
Sbjct: 173 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFG-SIRQTYTLDVLERSPHRPILQAGLPAN 231
Query: 64 IHTAPDMRAEIICNVYANPP 83
E C VY++
Sbjct: 232 QTAVLGSDVEFHCKVYSDAQ 251
Score = 30.7 bits (69), Expect = 0.11
Identities = 5/35 (14%), Positives = 10/35 (28%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
L + + + +G Y C + V
Sbjct: 62 RLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTD 96
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 43.3 bits (102), Expect = 4e-06
Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVIY-PPEVSVEKQWIHTAPDMRAEIICN-VYANPPAK 85
G Y C+A N +G++ S++ + + + VE + A A + C P
Sbjct: 81 GGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPT 140
Score = 37.9 bits (88), Expect = 3e-04
Identities = 11/46 (23%), Positives = 16/46 (34%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 62
+L + V G Y+CIA N +G S + V
Sbjct: 171 NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHHH 216
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 43.7 bits (103), Expect = 4e-06
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 7 SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHT 66
K + +L + + K AG+Y+ I ++ G+ S+ + E+ +E
Sbjct: 52 EKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSR-LKLVDEAFKELMMEVCKKIA 110
Query: 67 APDMRAEIIC 76
+I
Sbjct: 111 LSATDLKIQS 120
Score = 38.4 bits (89), Expect = 3e-04
Identities = 11/98 (11%), Positives = 23/98 (23%), Gaps = 20/98 (20%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTS--------------------KNF 47
K + + L ++ T G Y + +
Sbjct: 156 KTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAA 215
Query: 48 IVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAK 85
I + + + CNV+ +PP +
Sbjct: 216 IAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE 253
Score = 37.6 bits (87), Expect = 6e-04
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 56
++ V+ +G Y + N G TS +F V+V + PE
Sbjct: 280 YFTINGVSTADSGKYGLVVKNKYGSETS-DFTVSV-FIPE 317
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 43.2 bits (102), Expect = 4e-06
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY---PPEVSVEKQWI 64
+I R L + VT +G Y A+N G++TS + V PP Q +
Sbjct: 55 QISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATST-AELLVKAETAPPNFVQRLQSM 113
Query: 65 HTAPDMRAEIICNVYANPP 83
+ + V P
Sbjct: 114 TVRQGSQVRLQVRVTGIPT 132
Score = 33.9 bits (78), Expect = 0.007
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSK 45
+ SL + + +G Y A+N++G +TS
Sbjct: 157 DLYSLLIAEAYPEDSGTYSVNATNSVGRATST 188
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 42.1 bits (99), Expect = 5e-06
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSV 59
G+Y C+A N +GE+ S + + V
Sbjct: 84 EGVYVCVARNYLGEAVSHDASLEVAAAAHHHH 115
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 43.2 bits (102), Expect = 5e-06
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 7/63 (11%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP-------DMRAEIICNVYA 80
Y+C+A N +G++ S + + + + I P + C
Sbjct: 77 DAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIG 136
Query: 81 NPP 83
NP
Sbjct: 137 NPT 139
Score = 35.5 bits (82), Expect = 0.002
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
L ++ + G Y+C+A N++G SK + V
Sbjct: 164 FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR 202
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 43.5 bits (102), Expect = 5e-06
Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 4/72 (5%)
Query: 11 LLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDM 70
+ + V G Y C +S + +S V ++ ++ D
Sbjct: 285 TMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL----VTIVEKGFINATNSSEDYEIDQ 340
Query: 71 RAEIICNVYANP 82
E +V
Sbjct: 341 YEEFCFSVRFKA 352
Score = 43.5 bits (102), Expect = 6e-06
Identities = 8/53 (15%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 31 YQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPP 83
+C A N +G ++ F +++ P+ ++ + + I C
Sbjct: 206 IRCCARNELGRECTRLFTIDLNQTPQTTLPQ--LFLKVGEPLWIRCKAVHVNH 256
Score = 42.7 bits (100), Expect = 1e-05
Identities = 10/67 (14%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
S+ + ++T AG Y + T F V++ ++ + + + + ++C
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEATNYTI-LFTVSIRNTLLYTLRRPYFRKMEN-QDALVC 161
Query: 77 NVYANPP 83
+ P
Sbjct: 162 ISESVPE 168
Score = 42.4 bits (99), Expect = 1e-05
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 7 SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 56
+ + L N S+ G Y A N+ + +K F +N+ +
Sbjct: 369 CEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQF-TKMFTLNIRSGTK 417
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 43.3 bits (101), Expect = 6e-06
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP 54
+ VT L G Y C A + G ++ VNV+ P
Sbjct: 413 PIGESVTVTRDLEGTYLCRARSTQG-EVTREVTVNVLSP 450
Score = 40.6 bits (94), Expect = 6e-05
Identities = 12/89 (13%), Positives = 28/89 (31%), Gaps = 5/89 (5%)
Query: 2 LVIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGEST---SKNFIVNVIYPP--E 56
+ + + L R L L + C A+ + ++ + V+Y P +
Sbjct: 313 VTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLD 372
Query: 57 VSVEKQWIHTAPDMRAEIICNVYANPPAK 85
+ + +C + NP +
Sbjct: 373 ERDCPGNWTWPENSQQTPMCQAWGNPLPE 401
Score = 33.3 bits (75), Expect = 0.019
Identities = 8/58 (13%), Positives = 16/58 (27%), Gaps = 2/58 (3%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVIYPPE-VSVEKQWIHTAPDMRAEIICNVYANPPA 84
C ++ ++ + V + PE V + + C V P
Sbjct: 60 DSQPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPR 116
Score = 31.8 bits (71), Expect = 0.064
Identities = 8/65 (12%), Positives = 20/65 (30%), Gaps = 8/65 (12%)
Query: 28 AGLYQCIASNNIG-------ESTSKNFIVNVIYPPEVSVEKQWIHTAP-DMRAEIICNVY 79
+ C ++ E+TS + + P + D + ++C++
Sbjct: 154 GANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLD 213
Query: 80 ANPPA 84
P
Sbjct: 214 GLFPV 218
Score = 30.6 bits (68), Expect = 0.13
Identities = 6/54 (11%), Positives = 12/54 (22%), Gaps = 3/54 (5%)
Query: 31 YQCIASNNIGE-STSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPP 83
C T + + P V + K + + C +
Sbjct: 261 LTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVS--EGTEVTVKCEAHPRAK 312
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 42.8 bits (101), Expect = 7e-06
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE---KQWIHTAPDMRAE 73
+L + + G+Y CIA+N +GE + + + + P+ K+ + A
Sbjct: 64 TLTVMTEEQEDEGVYTCIATNEVGEVET-SSKLLLQATPQFHPGYPLKEKYYGAVGSTLR 122
Query: 74 IICNVYANPPAK 85
+ P
Sbjct: 123 LHVMYIGRPVPA 134
Score = 32.0 bits (73), Expect = 0.033
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 14 NRESLDLDRVTLKL-AGLYQCIASNNIGESTSK 45
+ L + V K AG Y+ SN G +
Sbjct: 157 HYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAI 189
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 42.5 bits (100), Expect = 7e-06
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVIY-PPEVSVEKQWIHTAPDMRAEIICNV-YANPPAK 85
G+Y C+A N +GE+ S + + V + + A A + C +P
Sbjct: 84 EGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPT 143
Score = 37.9 bits (88), Expect = 4e-04
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 56
L + AG Y C+ +N +GE S+ + V+ P
Sbjct: 166 KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPS 205
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 42.7 bits (100), Expect = 9e-06
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP 54
+ VT L G Y C A + G ++ VNV+ P
Sbjct: 228 PIGESVTVTRDLEGTYLCRARSTQG-EVTREVTVNVLSP 265
Score = 35.0 bits (80), Expect = 0.004
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 5/83 (6%)
Query: 7 SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIG---ESTSKNFIVNVIYPPEVSVEK-- 61
+ L R L L + C A+ + ++ + V+Y P +
Sbjct: 133 VPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCP 192
Query: 62 QWIHTAPDMRAEIICNVYANPPA 84
+ + +C + NP
Sbjct: 193 GNWTWPENSQQTPMCQAWGNPLP 215
Score = 30.8 bits (69), Expect = 0.11
Identities = 6/57 (10%), Positives = 13/57 (22%), Gaps = 3/57 (5%)
Query: 28 AGLYQCIASNNIGE-STSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPP 83
C T + + P V + K + + + C +
Sbjct: 73 TQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEV--SEGTEVTVKCEAHPRAK 127
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 42.0 bits (99), Expect = 1e-05
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 6/74 (8%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEK-----QWIHTAPDMR 71
L + VT A +YQ A+N G S + V P ++ + K +H
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSV-SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 72 AEIICNVYANPPAK 85
I P
Sbjct: 122 VSIKIPFSGKPDPV 135
Score = 31.6 bits (72), Expect = 0.050
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTS 44
+ + V K AG Y A N G
Sbjct: 159 FTSLVFPNGVERKDAGFYVVCAKNRFGIDQK 189
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 42.4 bits (100), Expect = 1e-05
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI-YPP 55
+L+ VT++ G+Y C+ SN++G +T+ + +NV
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVG-NTTASATLNVTGTHH 436
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 41.8 bits (98), Expect = 2e-05
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 9 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI-----YPPEVSVEKQW 63
++ SL ++ V G Y C+ N G S + + ++V+ P +
Sbjct: 69 YKVRNQHWSLIMESVVPSDKGNYTCVVENEYG-SINHTYHLDVVERSRHRPILQAGLPAN 127
Query: 64 IHTAPDMRAEIICNVYANPP 83
T E +C VY++
Sbjct: 128 ASTVVGGDVEFVCKVYSDAQ 147
Score = 38.7 bits (90), Expect = 2e-04
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 62
N E L L VT AG Y C SN IG++ + + V+ + ++
Sbjct: 183 NAEVLALFNVTEADAGEYICKVSNYIGQANQ-SAWLTVLPKQQAPGREK 230
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 41.4 bits (97), Expect = 2e-05
Identities = 9/53 (16%), Positives = 19/53 (35%)
Query: 7 SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV 59
+ ++ + + TLK +G Y C +S+ + + VS
Sbjct: 128 KGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVST 180
Score = 39.5 bits (92), Expect = 9e-05
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 73
S +D T+ +G Y+C + + S + V + +W+ D
Sbjct: 52 QASSYFIDAATVDDSGEYRCQTQLS---TLSDPVQLEVHIGWLLLQAPRWVFKEED-PIH 107
Query: 74 IICNVYANPPAKRF 87
+ C+ + N +
Sbjct: 108 LRCHSWKNTALHKV 121
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 39.8 bits (93), Expect = 2e-05
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 15 RESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
E +++ +GLY C+ S+ G T+ F VNV
Sbjct: 59 GEEVEVRDSIPADSGLYACVTSSPSGSDTT-YFSVNV 94
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 39.7 bits (93), Expect = 2e-05
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 56
E +++ +GLY C+ S+ G T+ F VNV
Sbjct: 52 TGEEVEVQDSVPADSGLYACVTSSPSGSDTT-YFSVNVSDALP 93
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 41.3 bits (97), Expect = 2e-05
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSK--NFIVNVIY-PPEVSVEKQWIHTAPDMRAE 73
+L ++ G Y+C+A+N+ G S N V V P S+ P
Sbjct: 165 ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVN 224
Query: 74 IICNVYANPP 83
I C +P
Sbjct: 225 ITCVAVGSPM 234
Score = 34.4 bits (79), Expect = 0.006
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE 60
L+ +K + Y C+A +++G + + V P+ +
Sbjct: 255 GRNVLELTDVKDSANYTCVAMSSLGVIEAV-AQITVKSLPKAGTK 298
Score = 34.0 bits (78), Expect = 0.009
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP-------DMRAEIICNVYA 80
+Y+C+A N++GE T + + V+ ++ I P A ++C
Sbjct: 76 ENVYECVAQNSVGEITV-HAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASG 134
Query: 81 NPP 83
NP
Sbjct: 135 NPD 137
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 41.7 bits (98), Expect = 3e-05
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
+L+ V L G+Y C+ +N G +++ + +NV
Sbjct: 408 TLNFSHVLLSDTGVYTCMVTNVAG-NSNASAYLNV 441
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 41.2 bits (96), Expect = 3e-05
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 9/89 (10%)
Query: 4 IFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGE---STSKNFIVNVIY------P 54
+ I ++ L + V K G Y C AS ++ + P
Sbjct: 150 LLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRP 209
Query: 55 PEVSVEKQWIHTAPDMRAEIICNVYANPP 83
VS + + + ++ICNV
Sbjct: 210 VIVSPANETMEVDLGSQIQLICNVTGQLS 238
Score = 33.2 bits (75), Expect = 0.016
Identities = 10/76 (13%), Positives = 22/76 (28%), Gaps = 5/76 (6%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY-PPEVSVEKQWIHT---APD 69
++E L ++ +G Y C+ N+ + P + Q I
Sbjct: 60 HKEKLWFVPAKVEDSGHYYCVVRNSSYCLRI-KISAKFVENEPNLCYNAQAIFKQKLPVA 118
Query: 70 MRAEIICNVYANPPAK 85
++C +
Sbjct: 119 GDGGLVCPYMEFFKNE 134
Score = 31.2 bits (70), Expect = 0.074
Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 4/49 (8%)
Query: 7 SKIELLYNRESLDLDRVTLK-LAGLYQCIASNNIGESTSKNFIVNVIYP 54
+ L++ + + + C A N G + + +IYP
Sbjct: 268 ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAY---IQLIYP 313
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 41.3 bits (96), Expect = 3e-05
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
L L++ T G Y +A+N G S + + + P
Sbjct: 310 CLRLNQPTHVNNGNYTLLAANPFG-QASASIMAAFMDNP 347
Score = 39.0 bits (90), Expect = 2e-04
Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 6/70 (8%)
Query: 17 SLDLDRVTLKL-AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEII 75
L L VT L C A N++G + + VNV +P Q I
Sbjct: 213 GLTLANVTSDLNRKNVTCWAENDVGRAE-VSVQVNVSFPA----SVQLHTAVEMHHWCIP 267
Query: 76 CNVYANPPAK 85
+V P
Sbjct: 268 FSVDGQPAPS 277
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 38.9 bits (91), Expect = 4e-05
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVIYP 54
L L + + G Y C+A+++ S+ +++I P
Sbjct: 58 VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 40.7 bits (95), Expect = 4e-05
Identities = 9/77 (11%), Positives = 19/77 (24%), Gaps = 1/77 (1%)
Query: 9 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVIYPPEVSVEKQWIHTA 67
+ + +L + + + G Y C S + V ++P V
Sbjct: 124 FKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLL 183
Query: 68 PDMRAEIICNVYANPPA 84
+ C
Sbjct: 184 EGNLVTLSCETKLLLQR 200
Score = 38.0 bits (88), Expect = 3e-04
Identities = 6/74 (8%), Positives = 22/74 (29%), Gaps = 4/74 (5%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 73
+ S + ++ +G Y+C + S + + + ++
Sbjct: 46 STPSYRITSASVNDSGEYRCQRGLS---GRSDPIQLEIHRGW-LLLQVSSRVFTEGEPLA 101
Query: 74 IICNVYANPPAKRF 87
+ C+ + +
Sbjct: 102 LRCHAWKDKLVYNV 115
Score = 30.3 bits (68), Expect = 0.18
Identities = 6/35 (17%), Positives = 14/35 (40%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
+ + +GLY C A+ G ++ + +
Sbjct: 224 EYQILTARREDSGLYWCEAATEDGNVLKRSPELEL 258
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 39.1 bits (91), Expect = 6e-05
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 5 FFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP---PEVSVEK 61
F ++ L +L + +V + Y G + V+ P P + +EK
Sbjct: 62 FKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIKIEK 121
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 39.4 bits (92), Expect = 7e-05
Identities = 6/43 (13%), Positives = 15/43 (34%)
Query: 9 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
+ + + + + +G Y C + +SK + V
Sbjct: 127 QKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
Score = 39.4 bits (92), Expect = 8e-05
Identities = 9/78 (11%), Positives = 23/78 (29%), Gaps = 4/78 (5%)
Query: 10 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPD 69
+ + + + +G Y C S S + V++ V +
Sbjct: 45 LIPTHTQPSYRFKANNNDSGEYTCQTGQT---SLSDPVHLTVLFEWLVLQTPHLEFQEGE 101
Query: 70 MRAEIICNVYANPPAKRF 87
+ C+ + + P +
Sbjct: 102 T-IMLRCHSWKDKPLVKV 118
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 39.7 bits (92), Expect = 8e-05
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Query: 6 FSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIH 65
F+ ++ S+++ + L G YQC G +K F++ V+ P +
Sbjct: 74 FTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPG-VANKKFLLTVLVKPSGTRCFVDGS 132
Query: 66 TAPDMRAEIICNVYANPP 83
++ C
Sbjct: 133 EEIGNDFKLKCEPKEGSL 150
Score = 37.4 bits (86), Expect = 5e-04
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP 54
+ + + + +G Y C N +G S ++V+ P
Sbjct: 177 VISVKNASSEYSGTYSCTVQNRVG-SDQCMLRLDVVPP 213
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 39.8 bits (93), Expect = 8e-05
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 56
+L +++ G Y+C+A+N+ G S + V
Sbjct: 168 ALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKH 207
Score = 38.3 bits (89), Expect = 3e-04
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP-DMR------AEIICNVYA 80
+Y+C+ASNN+GE S + + V+ ++ I P A ++C
Sbjct: 76 EAIYECVASNNVGEI-SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASG 134
Query: 81 NPP 83
NP
Sbjct: 135 NPD 137
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 39.2 bits (91), Expect = 1e-04
Identities = 7/49 (14%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 10 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS 58
+ + ++L + ++ L+ +G + C N + V+ + S
Sbjct: 137 KNIQGGKTLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVVLAFQKAS 184
Score = 34.6 bits (79), Expect = 0.004
Identities = 5/67 (7%), Positives = 15/67 (22%), Gaps = 9/67 (13%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
L + + ++ + Y C + E F + + + +
Sbjct: 69 PLIIKNLKIEDSDTYICEVEDQKEEVQLLVF--GLTANSDTHLL-------QGQSLTLTL 119
Query: 77 NVYANPP 83
Sbjct: 120 ESPPGSS 126
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 39.7 bits (92), Expect = 1e-04
Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 8/83 (9%)
Query: 7 SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGE---STSKNFIVNVI-----YPPEVS 58
K + L + V L+ AG Y+C+ + + +++ + + P +
Sbjct: 171 EKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVII 230
Query: 59 VEKQWIHTAPDMRAEIICNVYAN 81
+ I + R I C V+
Sbjct: 231 SPLKTISASLGSRLTIPCKVFLG 253
Score = 34.7 bits (79), Expect = 0.006
Identities = 7/46 (15%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 62
+L L + +G Y C N + + V + +
Sbjct: 82 ALWLLPALQEDSGTYVCTTRNASYC-DKMSIELRVFENTDAFLPFI 126
Score = 30.8 bits (69), Expect = 0.10
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 6 FSKIELLYNRESLDLDRVTLKLAGL-YQCIASNNIGESTSK 45
+S+ Y L D VT + + ++C+ N + T +
Sbjct: 288 YSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLR 328
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 39.7 bits (93), Expect = 1e-04
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
+L++ ++ G Y CIA+N G + S ++V
Sbjct: 442 TLEVRYAQVQDNGTYLCIAANAGG-NDSMPAHLHV 475
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 38.1 bits (89), Expect = 1e-04
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 7 SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS 58
S I L +L + RV + GLY C A + +G + + F + E +
Sbjct: 55 SGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAF-FIIEGAQEKT 105
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 37.8 bits (88), Expect = 1e-04
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV 57
L LD T G Y IA N G+ K + + P +
Sbjct: 63 CLQLDNPTHMNNGDYTLIAKNEYGK-DEKQISAHFMGWPGI 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 39.1 bits (91), Expect = 2e-04
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 2/53 (3%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPD 69
L +V ++ G+Y C A T + + V + ++ A D
Sbjct: 302 DLFFKKVQVEDGGVYTCYAMGETFNETL-SVELKVY-NFTLHGHHDTLNAAAD 352
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 38.6 bits (89), Expect = 2e-04
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 1/71 (1%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
+L ++ V+ Y C A+ K V + P+ + C
Sbjct: 55 TLTMNPVSFGNEHSYLCTATCESR-KLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKC 113
Query: 77 NVYANPPAKRF 87
+V P R
Sbjct: 114 SVADVYPFDRL 124
Score = 28.2 bits (62), Expect = 0.73
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 6/36 (16%)
Query: 29 GLYQCIASNNIGE------STSKNFIVNVIYPPEVS 58
+ C A +I E + V P+ +
Sbjct: 167 KVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPKNT 202
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 38.3 bits (89), Expect = 2e-04
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 73
S +D T+ +G Y+C + + S + V + +W+ D
Sbjct: 52 QASSYFIDAATVNDSGEYRCQTNLSTL---SDPVQLEVHIGWLLLQAPRWVFKEED-PIH 107
Query: 74 IICNVYANPPAKRF 87
+ C+ + N +
Sbjct: 108 LRCHSWKNTALHKV 121
Score = 36.0 bits (83), Expect = 0.001
Identities = 7/47 (14%), Positives = 17/47 (36%)
Query: 7 SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY 53
+ ++ + + TLK +G Y C +S+ + +
Sbjct: 128 KDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ 174
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 38.3 bits (89), Expect = 2e-04
Identities = 8/62 (12%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 3 VIFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGEST-SKNFIVNVIYP---PEVS 58
L+ +L + + +Y+ + G++ K F + + P++S
Sbjct: 53 TFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKIS 112
Query: 59 VE 60
Sbjct: 113 WT 114
Score = 35.6 bits (82), Expect = 0.002
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 10 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTS 44
+ L + + + T L+ ++C A N + + +S
Sbjct: 139 KHLKLSQRVITHKWTTSLSAKFKCTAGNKVSKESS 173
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 38.5 bits (89), Expect = 2e-04
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 12/96 (12%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
SL + + ++ G Y C+ S S + + V+ P+ + E Q + + C
Sbjct: 79 SLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARC 138
Query: 77 NVY-ANPPAK-----------RFDEGTRFDEGTVTA 100
PPA+ + + F GTVT
Sbjct: 139 VSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTV 174
Score = 30.8 bits (69), Expect = 0.089
Identities = 4/28 (14%), Positives = 8/28 (28%), Gaps = 1/28 (3%)
Query: 31 YQCIASN-NIGESTSKNFIVNVIYPPEV 57
C + + + + V YP
Sbjct: 191 VTCKVEHESFEKPQLLTVSLTVYYPHHH 218
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 37.9 bits (88), Expect = 3e-04
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP 54
++ V+ +G Y + N G TS +F V+V P
Sbjct: 175 YFTINGVSTADSGKYGLVVKNKYGSETS-DFTVSVFIP 211
Score = 34.5 bits (79), Expect = 0.006
Identities = 9/61 (14%), Positives = 17/61 (27%), Gaps = 1/61 (1%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTA 67
K + + L ++ T G Y + ++ E E Q + A
Sbjct: 51 KTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQK-TVDLSGQAYDEAYAEFQRLKQA 109
Query: 68 P 68
Sbjct: 110 A 110
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 36.6 bits (84), Expect = 4e-04
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 62
+L +D VT GLY C AS+ + + + V V P V+
Sbjct: 75 TLTIDGVTRSDQGLYTCAASSGLM-TKKNSTFVRVHEKPFVAFGSG 119
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 37.6 bits (86), Expect = 5e-04
Identities = 18/137 (13%), Positives = 34/137 (24%), Gaps = 17/137 (12%)
Query: 15 RESLDLDRVTLKLAGLYQCIASNNIG------ESTSKNFIVNVIYP--PEVSVEKQWIHT 66
+L L V + G Y C + ++ S V P + +
Sbjct: 89 APTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQV 148
Query: 67 APDMRAEIICNVYANPPA--------KRFDEGTRFDEGTVTAKVLQPFSERTLSVQDKIG 118
+ C A F+ + K + + + +
Sbjct: 149 DEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRAS 208
Query: 119 PGPDSNLR-PSAYMADA 134
NL +A + DA
Sbjct: 209 FSGARNLVIRAAKITDA 225
Score = 31.8 bits (71), Expect = 0.054
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSK 45
+L + + AG C + GE +
Sbjct: 214 NLVIRAAKITDAGRVWCELATGQGELDAD 242
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 37.6 bits (87), Expect = 5e-04
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 9/76 (11%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVI--------YPPEVSVEKQWIHTA 67
+L + V G Y C S+ S FI + YP ++ V+ + ++
Sbjct: 67 NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYAL 126
Query: 68 PDMRAEIICNVYANPP 83
+ C NP
Sbjct: 127 MGQNVTLECFALGNPV 142
Score = 33.3 bits (76), Expect = 0.013
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 7 SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
S E+ + L + + L+ G+Y+C A N G + V
Sbjct: 156 STAEISTSGAVLKIFNIQLEDEGIYECEAENIRG-KDKHQARIYV 199
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 36.5 bits (84), Expect = 6e-04
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS 58
L L++ T G Y +A+N G+ S + + + P
Sbjct: 64 CLRLNQPTHVNNGNYTLLAANPFGQ-ASASIMAAFMDNPFEF 104
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 36.3 bits (84), Expect = 7e-04
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
L ++ T G Y IA N +G ++ + + P
Sbjct: 66 CLLFNKPTHYNNGNYTLIAKNPLGT-ANQTINGHFLKEP 103
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 35.9 bits (83), Expect = 7e-04
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 6 FSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52
++ SL ++ V G Y C+ N G S + + ++V+
Sbjct: 55 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG-SINHTYHLDVV 100
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 35.8 bits (82), Expect = 8e-04
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 10 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
EL+ L L V G YQC+ SN+ G S S + +
Sbjct: 70 ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 35.8 bits (83), Expect = 9e-04
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 56
SL ++ VT + AG+Y CIA+N G+++ + + V
Sbjct: 67 SLIIEPVTSRDAGIYTCIATNRAGQNSF-SLELVVAAKES 105
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 37.1 bits (85), Expect = 0.001
Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 10 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSK-NFIVNVIYPPEVSVEKQWIHTAP 68
+ + ++L + ++ L+ +G + C N + K + +V V K+
Sbjct: 136 KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVE 195
Score = 36.3 bits (83), Expect = 0.002
Identities = 5/87 (5%), Positives = 19/87 (21%), Gaps = 13/87 (14%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
L + + ++ + Y C + E + + + + +
Sbjct: 68 PLIIKNLKIEDSDTYICEVEDQKEEVQLL--VFGLTANSDTHLL-------QGQSLTLTL 118
Query: 77 NVYANPPA----KRFDEGTRFDEGTVT 99
+ T++
Sbjct: 119 ESPPGSSPSVQCRSPRGKNIQGGKTLS 145
Score = 28.2 bits (62), Expect = 0.79
Identities = 10/71 (14%), Positives = 20/71 (28%), Gaps = 16/71 (22%)
Query: 17 SLDLDRVTLKLA--GLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEI 74
L L + + A G G+ + + V+ A ++ +
Sbjct: 256 HLTLPQALPQYAGSGNLTLALEAKTGK-LHQEVNLVVM-------------RATQLQKNL 301
Query: 75 ICNVYANPPAK 85
C V+ K
Sbjct: 302 TCEVWGPTSPK 312
Score = 26.7 bits (58), Expect = 3.0
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 16 ESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
+ V AG++QC+ S++ N+ P
Sbjct: 328 KREKAVWVLNPEAGMWQCLLSDSGQVLLE----SNIKVLP 363
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 36.2 bits (83), Expect = 0.001
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNVIYPP 55
++ +D + + G Y+C ASN+ ++ V +
Sbjct: 91 TISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQ 130
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 36.8 bits (84), Expect = 0.001
Identities = 14/85 (16%), Positives = 26/85 (30%), Gaps = 11/85 (12%)
Query: 12 LYNRESLDLDRVTLKLAGLYQCIAS---NNIGESTSKNFIVNVIYPPEVSV--------E 60
+ +L + G Y C+ + N ++ V V+ P+ +V +
Sbjct: 173 IPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPND 232
Query: 61 KQWIHTAPDMRAEIICNVYANPPAK 85
P I C VY +
Sbjct: 233 HVVYEKEPGEELLIPCTVYFSFLMD 257
Score = 33.3 bits (75), Expect = 0.016
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 14/62 (22%)
Query: 16 ESLDLDRVTLK-LAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEI 74
+ L + +VT + L Y C A + GE +K V P AP E+
Sbjct: 296 QILSIKKVTSEDLKRSYVCHARSAKGE-VAKAAKVKQKVP------------APRYTVEL 342
Query: 75 IC 76
C
Sbjct: 343 AC 344
Score = 31.4 bits (70), Expect = 0.075
Identities = 9/46 (19%), Positives = 12/46 (26%), Gaps = 1/46 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 62
L L G Y C+ N S F + V+
Sbjct: 80 VLWFRPTLLNDTGNYTCMLRNTTYCSKV-AFPLEVVQKDSCFNSPM 124
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 35.4 bits (82), Expect = 0.001
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
L L AG+Y C A N GE+ + V V+ PP
Sbjct: 70 GLLLTAALPTDAGVYVCRARNAAGEAYA-AAAVTVLEPP 107
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 34.9 bits (81), Expect = 0.001
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSK 45
L + AG Y C A N G +
Sbjct: 63 RLRILAAERGDAGFYTCKAVNEYGARQCE 91
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 35.0 bits (81), Expect = 0.002
Identities = 5/38 (13%), Positives = 16/38 (42%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSK 45
++ + + ++ V G Y + N+ G+ ++
Sbjct: 62 QVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAE 99
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 35.4 bits (81), Expect = 0.002
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS 58
+ + + AG Y+C + + +F + V +
Sbjct: 76 EMQIIKAKDNFAGNYRCEVTYKDKFDSC-SFDLEVHESTGTT 116
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 36.1 bits (83), Expect = 0.002
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Query: 6 FSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIH 65
K +L +L + V L+ AG+Y+C+ S G + K V V P ++ +
Sbjct: 70 LLKDQLSLGNAALQITDVKLQDAGVYRCMISY--GGADYKRITVKVNAPYNKINQRILVV 127
Query: 66 TAPDMRAEIICNVYANPP 83
E+ C P
Sbjct: 128 DPVTSEHELTCQAEGYPK 145
Score = 27.3 bits (60), Expect = 1.5
Identities = 3/38 (7%), Positives = 9/38 (23%), Gaps = 1/38 (2%)
Query: 22 RVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV 59
R+ ++ C + + + P
Sbjct: 181 RINTTTNEIFYCTFRRLDP-EENHTAELVIPELPLAHP 217
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 35.5 bits (81), Expect = 0.002
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52
++E +R ++ + G+Y N +GE N V VI
Sbjct: 95 RVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQV-NLTVKVI 138
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 34.6 bits (80), Expect = 0.002
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSK 45
SL TL G Y +A+N G +
Sbjct: 67 SLHTTASTLDDDGNYTIMAANPQGRISCT 95
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 34.7 bits (80), Expect = 0.002
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV 59
+L + V K AG Y A N G +T ++V P ++
Sbjct: 74 TLLIKDVNKKDAGWYTVSAVNEAGVTTCN-TRLDVTARPNQTL 115
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 35.3 bits (81), Expect = 0.002
Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 12/86 (13%)
Query: 4 IFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGEST-SKNFIVNVIYP---PEVSV 59
S + L + +T +G Y + G +K + ++ P +
Sbjct: 49 FLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYW 108
Query: 60 EKQWIHTAPDMRAEIICNVYANPPAK 85
E A + C V +
Sbjct: 109 E--------CSNATLTCEVLEGTDVE 126
Score = 33.0 bits (75), Expect = 0.017
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 10 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTS 44
E L + + L ++C A N + + +
Sbjct: 134 EHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESE 168
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 35.6 bits (81), Expect = 0.002
Identities = 6/55 (10%), Positives = 15/55 (27%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAP 68
+ + + T G+Y +S + ++ V + T
Sbjct: 143 TTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVA 197
Score = 33.6 bits (76), Expect = 0.012
Identities = 5/46 (10%), Positives = 18/46 (39%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 62
+L + T + AG Y+ + ++ ++ + + + +
Sbjct: 53 TLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITE 98
Score = 26.7 bits (58), Expect = 3.0
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 9/45 (20%)
Query: 17 SLDLDRVTLKLAGLYQCIASN---------NIGESTSKNFIVNVI 52
L + T + C+A + STS+ + V+
Sbjct: 259 HLFKESATYDDTAKFWCVAKLYQQIEDETVEVAASTSRKCSMEVV 303
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 34.2 bits (79), Expect = 0.003
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 4 IFFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSK 45
I +++ L + + G Y C+A N +G+ +
Sbjct: 52 IQYARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCS 93
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 34.3 bits (79), Expect = 0.004
Identities = 4/48 (8%), Positives = 13/48 (27%), Gaps = 1/48 (2%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
+ + + +G Y+ + T+ + V+
Sbjct: 71 HVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTA-TIRIRVVEKA 117
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 35.1 bits (81), Expect = 0.004
Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGE-STSKNFIVNV---IYPPEVSVEKQWIHTAPDMRA 72
L + VT A +YQ A+N G S + + V V I+ P+ +H
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 73 EIICNVYANPP 83
I P
Sbjct: 123 SIKIPFSGKPD 133
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 33.8 bits (78), Expect = 0.004
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSK 45
+L++ +G Y+ + +N GE++
Sbjct: 65 TLEILDCHTDDSGTYRAVCTNYKGEASDY 93
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 33.8 bits (78), Expect = 0.004
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSK 45
SL + V AG Y C+A N GE+T
Sbjct: 63 SLIFEVVRASDAGAYACVAKNRAGEATFT 91
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 35.0 bits (80), Expect = 0.004
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 7 SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSK 45
K + +L + + K AG+Y+ I ++ G+ S+
Sbjct: 267 EKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSR 305
Score = 34.2 bits (78), Expect = 0.009
Identities = 7/85 (8%), Positives = 21/85 (24%), Gaps = 19/85 (22%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS------------------ 58
+ ++++ + G Y + + S ++ ++
Sbjct: 167 EMFMEKLQDEDEGTYTFQLQDGKATNHS-TVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 225
Query: 59 VEKQWIHTAPDMRAEIICNVYANPP 83
VE + + C V
Sbjct: 226 VEYLSWEVTGECNVLLKCKVANIKK 250
Score = 33.4 bits (76), Expect = 0.016
Identities = 11/90 (12%), Positives = 25/90 (27%), Gaps = 12/90 (13%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY------------PP 55
++E N+ + + + G+Y C ++ G ++S +
Sbjct: 50 EVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTV 109
Query: 56 EVSVEKQWIHTAPDMRAEIICNVYANPPAK 85
V E + + AK
Sbjct: 110 PVKSELAVEILEKGQVRFWMQAEKLSGNAK 139
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 34.9 bits (80), Expect = 0.004
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 7 SKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSK 45
K + +L + + K AG+Y+ I ++ G+ S+
Sbjct: 162 EKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSR 200
Score = 30.7 bits (69), Expect = 0.13
Identities = 8/84 (9%), Positives = 21/84 (25%), Gaps = 17/84 (20%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS-----------------V 59
+ ++++ + G Y + + S +V ++ V
Sbjct: 62 EMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV 121
Query: 60 EKQWIHTAPDMRAEIICNVYANPP 83
E + + C V
Sbjct: 122 EYLSWEVTGECNVLLKCKVANIKK 145
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 34.4 bits (79), Expect = 0.005
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSK 45
SL + V Y C A N++GE+T
Sbjct: 99 SLTISEVCGDDDAKYTCKAVNSLGEATCT 127
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 33.8 bits (78), Expect = 0.005
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 56
K+E N L + + G Y + N +G + + V+ P+
Sbjct: 55 KVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQA-QVNLTVVDKPD 102
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 33.5 bits (77), Expect = 0.005
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTS 44
+L + + + G Y C+A+++ GE++
Sbjct: 63 TLQIKNLRISDTGTYTCVATSSSGETSW 90
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 33.4 bits (77), Expect = 0.005
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSK 45
L++ + +GLY C N+ G +S
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSS 91
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 33.1 bits (76), Expect = 0.006
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSK 45
L + +T G Y+C N+ GE +S
Sbjct: 59 ILYVKDITKLDDGTYRCKVVNDYGEDSSY 87
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 34.1 bits (78), Expect = 0.006
Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 5 FFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP---PEVSVE 60
F +++ L SL + +T Y+ + N + + F + V+ P + E
Sbjct: 49 FKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN---ITDTMKFFLYVLEMVSKPMIYWE 104
Score = 32.6 bits (74), Expect = 0.024
Identities = 6/39 (15%), Positives = 14/39 (35%)
Query: 10 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFI 48
E L + + L ++C A N + + + +
Sbjct: 129 EHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVV 167
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 33.0 bits (76), Expect = 0.007
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSK 45
L + VT + + A N GE++S
Sbjct: 63 ELVIRDVTGEDSASIMVKAINIAGETSSH 91
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 34.1 bits (77), Expect = 0.008
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
S+ L V G+Y C + K +++V+
Sbjct: 202 SIKLQTVKESDQGIYTCSIYVGKL-ESRKTIVLHVVQDE 239
Score = 34.1 bits (77), Expect = 0.009
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
SL L V G+Y C K V + PE + + ++ C
Sbjct: 85 SLLLQDVQKADEGIYTCEIRLKNESMVMKK-PVELWVLPEEP---RDLRVRVGDTTQMRC 140
Query: 77 NVYANPP 83
++ +
Sbjct: 141 SIQSTEE 147
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 32.9 bits (75), Expect = 0.008
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
L + V AG Y C SN ++V
Sbjct: 63 ILTIRNVQPSDAGTYVCTGSNMFA-MDQGTATLHV 96
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 33.6 bits (77), Expect = 0.009
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 56
KI + L++ + G Y C A N IG+ S FI+ P
Sbjct: 68 KIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQ-ESLEFILVQADTPS 115
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 33.8 bits (77), Expect = 0.009
Identities = 10/74 (13%), Positives = 19/74 (25%), Gaps = 5/74 (6%)
Query: 5 FFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWI 64
K SL L + ++ G Y+ S S + + + V
Sbjct: 59 KQGKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQ 118
Query: 65 HTAPDMRAEIICNV 78
+ C +
Sbjct: 119 LF-----QNMTCEL 127
Score = 28.0 bits (62), Expect = 0.98
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 22 RVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52
+ Y CIA N + + S + +
Sbjct: 162 DPRISSEQDYTCIAENAVS-NLSFSVSAQKL 191
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 33.0 bits (75), Expect = 0.011
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 6 FSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIH 65
+ + N+ S+ + VTL+ G+Y+C+ ++ ++K V V+ + + H
Sbjct: 56 YQLLHHSANQLSITVPNVTLQDEGVYKCLHYSD--SVSTKEVKVIVLATMKGEFCRYPSH 113
Query: 66 TAP 68
P
Sbjct: 114 WRP 116
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 33.8 bits (76), Expect = 0.012
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIIC 76
+++ +++ +G Y+C N S + + V P + + + I C
Sbjct: 76 VVNIAQLSQDDSGRYKCGLGIN-SRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINC 134
Query: 77 NVYANPPAKR 86
KR
Sbjct: 135 PFKTENAQKR 144
Score = 33.0 bits (74), Expect = 0.020
Identities = 10/42 (23%), Positives = 12/42 (28%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVS 58
SL L+ VT G Y C + V V
Sbjct: 510 SLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAG 551
Score = 31.9 bits (71), Expect = 0.065
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGE---STSKNFIVNVIYPPEVSVEKQWIHTAPDMRAE 73
S+ + + + AG Y C A ++ S + + + V + +
Sbjct: 291 SVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVA 350
Query: 74 IICNVYANPP 83
++C
Sbjct: 351 VLCPYNRKES 360
Score = 31.5 bits (70), Expect = 0.072
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 62
S+ ++++ L AG Y C A ++ + N + V+ P V +
Sbjct: 186 SVVINQLRLSDAGQYLCQAGDDSNSNKK-NADLQVLKPEPELVYED 230
Score = 28.0 bits (61), Expect = 1.1
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP 54
++ L+++T + AG Y C+ + + T+ + P
Sbjct: 407 TVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEP 444
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 32.8 bits (75), Expect = 0.013
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTS 44
L + L G Y CIAS GE+T
Sbjct: 63 VLQIRYAKLGDTGRYTCIASTPSGEATW 90
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.014
Identities = 24/140 (17%), Positives = 43/140 (30%), Gaps = 41/140 (29%)
Query: 22 RVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWI-----HTAPDMRAEI-I 75
+L + L + NN G + ++++ + V+ + H + EI +
Sbjct: 316 NTSLPPSILEDSLE-NNEGVPSP---MLSISNLTQEQVQDY-VNKTNSHLPAGKQVEISL 370
Query: 76 CN-----VYANPPA--KRFDEGTRFDEGTVTAKVLQ---PFSERTLSVQDKIGPGPDSNL 125
N V + PP + + + + Q PFSER L
Sbjct: 371 VNGAKNLVVSGPPQSLYGLN--LTLRKAKAPSGLDQSRIPFSERKLKFS----------N 418
Query: 126 R------P--SAYMADAPPT 137
R P S + A
Sbjct: 419 RFLPVASPFHSHLLVPASDL 438
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 32.9 bits (75), Expect = 0.016
Identities = 6/35 (17%), Positives = 13/35 (37%)
Query: 10 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTS 44
E L + + L ++C A N + + +
Sbjct: 139 EHLRSLRQKTMSYQWTNLRAPFKCKAVNRVSQESE 173
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 32.7 bits (74), Expect = 0.023
Identities = 11/80 (13%), Positives = 23/80 (28%), Gaps = 4/80 (5%)
Query: 6 FSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIH 65
+ +L + + V ++ +G Y+C+ + V I
Sbjct: 57 LLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYK---YLTVKVKASYMRIDTRIL 113
Query: 66 TAP-DMRAEIICNVYANPPA 84
P ++ C P A
Sbjct: 114 EVPGTGEVQLTCQARGYPLA 133
Score = 26.5 bits (58), Expect = 3.0
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 22 RVTLKLAGLYQCIASNNIG-ESTSKNFIVNVIYPPEV 57
R+ + + + C+ N E TS P+V
Sbjct: 163 RLKPQPSRNFSCMFWNAHMKELTSAIIDPLSRMEPKV 199
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 31.5 bits (72), Expect = 0.025
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
IE + +L + V + GLY N G ++ +++
Sbjct: 55 HIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSA-TVNIHI 97
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 31.2 bits (71), Expect = 0.042
Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 3/41 (7%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV 57
L +D V + G Y + ++K +N +
Sbjct: 64 KLVIDDVRPEDEGDYTFVPDGYALSLSAK---LNFLEIKVS 101
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 31.8 bits (71), Expect = 0.042
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
+++ +L G+YQC S N + + +
Sbjct: 47 DKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDA 88
Score = 30.6 bits (68), Expect = 0.10
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNV 51
+G Y C + E + +
Sbjct: 179 SGYYVCYPRGSKPEDANFYLYLRA 202
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 31.1 bits (70), Expect = 0.048
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
L + G Y+C S S NF + V
Sbjct: 73 ELHITDAQPAFTGSYRCEVSTKDKFDCS-NFNLTV 106
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 31.0 bits (70), Expect = 0.062
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 42 STSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFD---EGTRFDEGT 97
S+ + + V PP +S + H + +I C + + PP R + + GT
Sbjct: 2 SSGSSGTLTVNGPPIISSTQT-QHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGT 59
Score = 27.5 bits (61), Expect = 0.82
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNV 51
+Y C A N+ G S ++ +
Sbjct: 89 QTIYNCTAWNSFG-SDTEIIRLKE 111
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 31.3 bits (70), Expect = 0.065
Identities = 8/43 (18%), Positives = 13/43 (30%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV 59
L L + Y C+ + +NV PE +
Sbjct: 78 RLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATE 120
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 30.7 bits (69), Expect = 0.076
Identities = 8/46 (17%), Positives = 15/46 (32%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 62
L L +T+ G Y CI + + + V+ +
Sbjct: 72 GLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGAR 117
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 30.4 bits (69), Expect = 0.077
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
L + + G Y +K V+VI P
Sbjct: 62 KLVIANALTEDEGDYVFAPDAYNVTLPAK---VHVISGP 97
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 30.3 bits (68), Expect = 0.085
Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 9 IELLYNRESLDLDRVTLKLAGLYQC-IASNNIGESTSKNFIVNV 51
I L +L + + ++ AG Y+ I + +T+K + + +
Sbjct: 65 IHALGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 30.0 bits (68), Expect = 0.092
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
S+ +G Y+ N +GE + F V V
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEA-IFEVIV 92
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 31.0 bits (69), Expect = 0.11
Identities = 11/58 (18%), Positives = 18/58 (31%)
Query: 29 GLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMRAEIICNVYANPPAKR 86
C ++ G+ST+K F+ P V + + C V P
Sbjct: 61 SQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 29.6 bits (67), Expect = 0.13
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
L ++ T A Y + + +S V++ P
Sbjct: 65 ILIIEGATKADAAEYSVMTTG---GQSSAKLSVDLKSGP 100
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 30.4 bits (68), Expect = 0.14
Identities = 10/71 (14%), Positives = 22/71 (30%), Gaps = 3/71 (4%)
Query: 6 FSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIH 65
+ + + +L + VT +G Y C + + +V + S +
Sbjct: 73 ILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDF---YEKALVELKVAALGSDLHVDVK 129
Query: 66 TAPDMRAEIIC 76
D + C
Sbjct: 130 GYKDGGIHLEC 140
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 29.9 bits (66), Expect = 0.18
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 5/82 (6%)
Query: 6 FSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV-IYPPEVSVEKQWI 64
++ R L + +L AG C+ S G + + V +P +++V +
Sbjct: 49 LGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCG-GRTFQHTVQLLVYAFPNQLTVSPAAL 107
Query: 65 HTAPDMRAEIICNVYANPPAKR 86
E+ C + P
Sbjct: 108 ---VPGDPEVACTAHKVTPVDP 126
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 29.5 bits (66), Expect = 0.31
Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 3/66 (4%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNF---IVNVIYPPEVSVEKQWIHTAPDM 70
N+ + + ++AG Y CI S N +V +Y
Sbjct: 58 NKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGE 117
Query: 71 RAEIIC 76
+ C
Sbjct: 118 KVTFYC 123
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 29.5 bits (65), Expect = 0.32
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGEST 43
+ + +L G YQC +
Sbjct: 151 TKNTWNLGNNAKDPRGTYQCQGAKETSNPL 180
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 29.4 bits (66), Expect = 0.33
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTS 44
L ++RV G Y A N+ G
Sbjct: 539 GLTINRVKGDDKGEYTVRAKNSYGTKEE 566
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 28.6 bits (63), Expect = 0.37
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP 54
L + +V L G Y+ S F ++V P
Sbjct: 81 ELHIGKVVLGDRGYYRLEVKAKDTCD-SCGFNIDVEAP 117
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 28.2 bits (62), Expect = 0.58
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 56
S+ + V L G Y C + +V V+ P+
Sbjct: 104 SISISNVALADEGEYTCSIFTMPVRTAK--SLVTVLGIPQ 141
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 79
Score = 26.8 bits (59), Expect = 0.85
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTS 44
LL + LDL + L G+Y+C ++ + S
Sbjct: 27 VGTLLSDITRLDLGKRILDPRGIYRCNGTDIYKDKES 63
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 27.7 bits (61), Expect = 1.5
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 23/117 (19%)
Query: 31 YQCIASNNIGESTSKNFIVNVIY------PPEVSVEK----------QWIHTAPDMRAEI 74
A N +G+ TS + + +Y P +SV W + + +
Sbjct: 173 VWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIIL 232
Query: 75 ICNVYANPPAKR-----FDEGTRFDEGTVTAKVLQPFSERTLSVQ--DKIGPGPDSN 124
N+ E T + T + L+PF+E ++ + G G S+
Sbjct: 233 KYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSD 289
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 26.8 bits (59), Expect = 2.1
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 20 LDRVTLKLAGLYQCIASNNIGEST-SKNFIVNVI---YPPEVSV 59
+D + AG YQC S + V P +S
Sbjct: 68 IDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSA 111
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 26.3 bits (58), Expect = 2.2
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
SL + + ++ G Y C+ S S + + V+ P
Sbjct: 80 SLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 27.1 bits (59), Expect = 2.3
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 56
L L V L +G Y C + + + V PPE
Sbjct: 61 RLLLRSVQLHDSGNYSCYRAGRPAGTVH----LLVDVPPE 96
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 26.0 bits (57), Expect = 2.6
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVIYPP 55
AG Y C+ G +N+ PP
Sbjct: 80 AGEYGCMVDGARGPQILHRVSLNI-LPP 106
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 26.0 bits (57), Expect = 2.7
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
S+ + V+L G Y C + + V+ P
Sbjct: 72 SISVSDVSLSDEGQYTCSLFTM--PVKTSKAYLTVLGVP 108
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 26.3 bits (58), Expect = 2.7
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFI---VNVIYPP 55
N+ + + ++AG Y CI S N + V +Y
Sbjct: 55 NKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDT 99
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 25.8 bits (57), Expect = 2.9
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
L L ++ +G ++C S V P
Sbjct: 66 RLILPEAKVQDSGEFECRTEG---VSAFFGVTVQDPSGP 101
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 26.0 bits (57), Expect = 3.0
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 11/53 (20%)
Query: 14 NRESLDLDRVTLKL-------AGLYQCIASNNIGESTSKNFIVNVIYPPEVSV 59
R S D D TL+L GLYQCI + + +N E+SV
Sbjct: 60 GRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNS----ELSV 108
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 26.6 bits (58), Expect = 3.2
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Query: 5 FFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWI 64
S L SL L + L+ AG Y+C ++ + V+ P +
Sbjct: 71 IVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKA-QGTVQLEVVASPASRLLLD-Q 128
Query: 65 HTAPDMRAEIICNVY 79
+ + +C
Sbjct: 129 VGMKENEDKYMCESS 143
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 25.6 bits (56), Expect = 3.6
Identities = 6/38 (15%), Positives = 10/38 (26%), Gaps = 2/38 (5%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP 54
+L + V + G Y + V P
Sbjct: 74 ALHISNVRKEDKGTYYMRVLR--ETENELKITLEVFDP 109
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 25.8 bits (57), Expect = 3.8
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQ 62
L L ++ LK +G A G+ + + V P V
Sbjct: 71 VLTLRQLALKDSGTIYFEA----GDQRAS-AALRVTEKPSVFSRSG 111
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 25.6 bits (55), Expect = 4.5
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 18 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
L + L G Y C + N S + ++V
Sbjct: 81 LHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHV 114
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 25.3 bits (56), Expect = 4.7
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGEST 43
L + +LK AG Y C + ++
Sbjct: 64 MLVIRGASLKDAGEYTCEVEASKSTAS 90
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex;
HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*
Length = 1642
Score = 26.3 bits (56), Expect = 5.4
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 29 GLYQCIASN-NIGESTSKNFIVNVIYPP--EVSVEKQWIHTAPDMRAEIICNVYANPPAK 85
G ++ +A + E+ + F V P EV ++ D ++ A
Sbjct: 195 GTWRIVAKYEHSPENYTAYFDVRKYVLPSFEVRLQPSEKFFYIDGNENFHVSITARYLYG 254
Query: 86 RFDEGTRF 93
EG F
Sbjct: 255 EEVEGVAF 262
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 5.4
Identities = 6/29 (20%), Positives = 15/29 (51%), Gaps = 8/29 (27%)
Query: 108 ERTLSVQDKIGPGPDSNLRPSAYMADAPP 136
E+ +++ K+ ++L+ Y D+ P
Sbjct: 18 EKQ-ALK-KL----QASLKL--YADDSAP 38
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 25.3 bits (55), Expect = 6.9
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 1/39 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
+L + V G Y C ++ + V P
Sbjct: 86 ALRIQNVRFSDEGGYTCFFRDH-SYQEEAAVELKVEDPF 123
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 24.7 bits (54), Expect = 8.8
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 94 DEGTVTAKVLQPFSERTLSVQDKIGPGPDS 123
D G V V S+ +L V+++ GP S
Sbjct: 76 DAGEVVFSVRGLTSKASLIVRER--SGPSS 103
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 24.8 bits (54), Expect = 8.9
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFI---VNVIYPP 55
N+ + +T AG Y+C + G S + + V Y
Sbjct: 56 NKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNK 100
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 24.2 bits (53), Expect = 9.1
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASN 37
+ L L L + G A+N
Sbjct: 58 KKHILILHNCQLGMTGEVSFQAAN 81
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 25.5 bits (54), Expect = 9.2
Identities = 11/62 (17%), Positives = 27/62 (43%)
Query: 12 LYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVEKQWIHTAPDMR 71
L R++L + ++ +G+YQC++ + T + + +V + T ++
Sbjct: 582 LMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQ 641
Query: 72 AE 73
E
Sbjct: 642 TE 643
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.396
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,076,461
Number of extensions: 110801
Number of successful extensions: 533
Number of sequences better than 10.0: 1
Number of HSP's gapped: 465
Number of HSP's successfully gapped: 330
Length of query: 139
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 55
Effective length of database: 4,356,429
Effective search space: 239603595
Effective search space used: 239603595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.3 bits)