RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12134
(139 letters)
>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 38.0 bits (87), Expect = 3e-05
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 20 LDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
L V AG Y C + S+ + V
Sbjct: 58 LKSVERSDAGRYWCQVEDGGETEISQPVWLTV 89
>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,
CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 96
Score = 38.1 bits (87), Expect = 4e-05
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 13 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
N L +D + + AG YQC SN + S + +++I+ P
Sbjct: 53 QNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP 95
>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId:
9606]}
Length = 101
Score = 36.7 bits (84), Expect = 1e-04
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 9 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 56
+E N L + + G Y + N +G + + V+ P+
Sbjct: 49 VENSENGSKLTILAARQEHCGCYTLLVENKLGSRQA-QVNLTVVDKPD 95
>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor
TrkA, different domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 107
Score = 35.3 bits (80), Expect = 5e-04
Identities = 9/39 (23%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
L L++ T G Y +A+N G++++ + + + P
Sbjct: 64 CLRLNQPTHVNNGNYTLLAANPFGQASA-SIMAAFMDNP 101
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha
subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 34.6 bits (78), Expect = 6e-04
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 18 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
+ + T++ +G Y C + S+ + VI P
Sbjct: 51 ISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 88
>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis
elegans) [TaxId: 6239]}
Length = 97
Score = 34.9 bits (79), Expect = 7e-04
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPE 56
N L ++RV G Y A N+ G +NV E
Sbjct: 55 NDYGLTINRVKGDDKGEYTVRAKNSYGTKEE-IVFLNVTRHSE 96
>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 89
Score = 33.6 bits (76), Expect = 0.001
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 18 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
L + V G Y C A+N G+ +V V
Sbjct: 56 LVIKGVKNGDKGYYGCRATNEHGDKYF-ETLVQV 88
>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 94
Score = 33.9 bits (76), Expect = 0.001
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 13 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
+ SL R G YQC A G ++S+
Sbjct: 55 KDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRK 93
>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 126
Score = 33.9 bits (76), Expect = 0.002
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 1/39 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPP 55
+L + V G Y C ++ + V P
Sbjct: 82 ALRIQNVRFSDEGGYTCFFRDHSY-QEEAAVELKVEDPF 119
>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 130
Score = 33.5 bits (75), Expect = 0.002
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 9 IELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52
+E +R ++ + G+Y N +G N V VI
Sbjct: 87 VETTKDRSIFTVEGAEKEDEGVYTVTVKNPVG-EDQVNLTVKVI 129
>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 97
Score = 33.0 bits (74), Expect = 0.003
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 18 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN 50
+ + V K AG YQC+A+N G S+ +
Sbjct: 64 VISNPVKAKDAGSYQCVATNARGTVVSREASLR 96
>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32)
{Human (Homo sapiens), IIb [TaxId: 9606]}
Length = 88
Score = 32.6 bits (73), Expect = 0.003
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 22 RVTLKLAGLYQCIASNNIGESTSKNFIVNVIYP 54
+ +G Y C + +SK + V P
Sbjct: 55 QANHSHSGDYHCTGNIGYTLYSSKPVTITVQAP 87
>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein
phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 32.7 bits (73), Expect = 0.003
Identities = 9/46 (19%), Positives = 15/46 (32%)
Query: 6 FSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
S ++ T + AG Y+C+ G S + V
Sbjct: 50 IKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 95
>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor
tyro3, second domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 85
Score = 32.6 bits (73), Expect = 0.004
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNV 51
+ ++ C A N G ++S+ V++
Sbjct: 61 STMFSCEAHNLKGLASSRTATVHL 84
>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 97
Score = 31.8 bits (71), Expect = 0.008
Identities = 7/40 (17%), Positives = 16/40 (40%)
Query: 13 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52
+ + L + G+Y C N +G+ + + V+
Sbjct: 58 TSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 97
>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM,
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 102
Score = 31.6 bits (70), Expect = 0.009
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFI-VNVI 52
+ VT K G Y C+ S G++ + I + V+
Sbjct: 66 GITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL 102
>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 31.4 bits (70), Expect = 0.010
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 5 FFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52
F +++ L SL + +T Y+ + N + F + V+
Sbjct: 49 FKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITD---TMKFFLYVL 93
>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different
modules [TaxId: 9606]}
Length = 91
Score = 31.4 bits (70), Expect = 0.011
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 22 RVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
V G Y + N+ G+ + F + +
Sbjct: 61 SVQASDEGNYSVVVENSEGKQEA-EFTLTI 89
>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}
Length = 97
Score = 31.3 bits (70), Expect = 0.012
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52
SL ++ V G Y C+ N G + ++V+
Sbjct: 63 SLIMESVVPSDKGNYTCVVENEYGSINH-TYHLDVV 97
>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)
[TaxId: 9103]}
Length = 102
Score = 31.4 bits (70), Expect = 0.012
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 22 RVTLKLAGLYQCIASNNIGESTSK 45
V Y C A N++GE+T
Sbjct: 71 EVCGDDDAKYTCKAVNSLGEATCT 94
>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor,
FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}
Length = 109
Score = 31.1 bits (69), Expect = 0.016
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52
E L + VT + AG Y C+A N+IG S + + V+
Sbjct: 72 EIEVLYIRNVTFEDAGEYTCLAGNSIGISFH-SAWLTVL 109
>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 89
Score = 30.6 bits (68), Expect = 0.017
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 18 LDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
L ++ L+ +G+YQC+A N G + + + V
Sbjct: 55 LRFSKLVLEDSGMYQCVAENKHGTVYA-SAELTV 87
>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 30.7 bits (68), Expect = 0.024
Identities = 7/44 (15%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE 60
S+ + + G Y+C+ ++ + + V +SV+
Sbjct: 66 SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEV----TLSVK 105
>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 30.8 bits (68), Expect = 0.026
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSVE 60
+ + + AG Y+C + S +F + V +
Sbjct: 69 EMQIIKAKDNFAGNYRCEVTYKDKF-DSCSFDLEVHESTGTTPN 111
>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 110
Score = 30.4 bits (67), Expect = 0.028
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 20 LDRVTLKLAGLYQCIASNNIGES-TSKNFIVNVI 52
D VT +G Y C A N G + S+ ++ +
Sbjct: 71 FDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV 104
>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 100
Score = 30.2 bits (67), Expect = 0.030
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVI 52
Y CIA N GE + + + V
Sbjct: 75 EAEYVCIAENKAGEQDA-SIHLKVF 98
>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 91
Score = 29.8 bits (66), Expect = 0.041
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSK 45
L + V + G Y+C A N G T +
Sbjct: 56 LLHIQNVDFEDEGTYECEAENIKGRDTYQ 84
>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 29.6 bits (65), Expect = 0.055
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEV 57
L LD T G Y IA N G+ + + P +
Sbjct: 63 CLQLDNPTHMNNGDYTLIAKNEYGKDEK-QISAHFMGWPGI 102
>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 29.1 bits (64), Expect = 0.060
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 11 LLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
L L V L +G Y C + + + +V+V
Sbjct: 55 WAGMGRRLLLRSVQLHDSGNYSCYRAGRPA--GTVHLLVDV 93
>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 29.2 bits (64), Expect = 0.063
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 13 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV 59
R++L + ++ +G+YQC++ + T F V + EV V
Sbjct: 47 MGRKNLLIFNLSEGDSGVYQCLSEERVKNKTV--FQVVAKHVLEVKV 91
>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different
modules [TaxId: 9606]}
Length = 98
Score = 29.1 bits (64), Expect = 0.067
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 22 RVTLKLAGLYQCIASNNIGESTSK 45
VT + + A N GE++S
Sbjct: 67 DVTGEDSASIMVKAINIAGETSSH 90
>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 29.0 bits (64), Expect = 0.070
Identities = 7/43 (16%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 8 KIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVN 50
+I + + L ++ T A Y + + +S V+
Sbjct: 49 RIRVEGKKHILIIEGATKADAAEYSVMTTG---GQSSAKLSVD 88
Score = 28.6 bits (63), Expect = 0.11
Identities = 11/63 (17%), Positives = 16/63 (25%)
Query: 54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRFDEGTRFDEGTVTAKVLQPFSERTLSV 113
V K P ++ V + T+ D + S LSV
Sbjct: 28 DANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKLSV 87
Query: 114 QDK 116
K
Sbjct: 88 DLK 90
>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 29.2 bits (64), Expect = 0.078
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 20 LDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
+ V G Y+C A+ S + + V
Sbjct: 69 FEPVLPNDNGSYRCSANFQSNLIESHSTTLYV 100
>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 97
Score = 28.5 bits (62), Expect = 0.11
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 22 RVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
+ AG+Y+C+ + G + V +
Sbjct: 66 NANIDDAGIYKCVVTAEDGTQSEATVNVKI 95
>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1,
ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 28.0 bits (61), Expect = 0.13
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVIYP 54
G Y C A + G ++ VNV+ P
Sbjct: 59 EGTYLCRARSTQG-EVTREVTVNVLSP 84
>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 89
Score = 28.4 bits (62), Expect = 0.13
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
L + V AG Y C SN ++V
Sbjct: 55 ILTIRNVQPSDAGTYVCTGSNMFA-MDQGTATLHV 88
>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a,
CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 107
Score = 28.5 bits (63), Expect = 0.14
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 5 FFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
+S E++Y+ SL +T+K G+Y ++ T +V
Sbjct: 60 AYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV 106
>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car),
domain 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 28.8 bits (63), Expect = 0.14
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52
S+++ + L G YQC G +K + V+
Sbjct: 86 GDASINVTNLQLSDIGTYQCKVKKAPG-VANKKIHLVVL 123
>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C,
different domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 110
Score = 28.5 bits (62), Expect = 0.15
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNV 51
L + G Y+C S S NF + V
Sbjct: 73 ELHITDAQPAFTGGYRCEVSTKDKFDCS-NFNLTV 106
>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 92
Score = 28.0 bits (61), Expect = 0.18
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 20 LDRVTLKLAGLYQCIASNNI-GESTSKNFIVNV 51
+ + G Y+C GE K+ V V
Sbjct: 60 IRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 92
>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens)
[TaxId: 9606]}
Length = 101
Score = 27.7 bits (60), Expect = 0.23
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNV 51
G Y+C +++ G S + V
Sbjct: 78 PGQYRCNGTSSKG-SDQAIITLRV 100
Score = 26.6 bits (57), Expect = 0.61
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 54 PPEVSVEKQWIHTAPDMRAEIICNVYANPPAKRF 87
PP V K H A ++C + PP +
Sbjct: 2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDW 35
>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1
(ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 27.5 bits (60), Expect = 0.26
Identities = 3/32 (9%), Positives = 8/32 (25%), Gaps = 1/32 (3%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVIYPPEVSV 59
+ C ++ N P ++
Sbjct: 72 GAQFSCRTELDLR-PQGLELFENTSAPYQLQT 102
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 27.5 bits (60), Expect = 0.27
Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 3/42 (7%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGE---STSKNFIVNVIYPP 55
L + V K G Y C AS ++ +
Sbjct: 59 RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEEN 100
>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 105
Score = 27.7 bits (60), Expect = 0.27
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 17 SLDLDRVTLKLAGLYQCIASNNIGESTSKNF--IVNVIYPPE 56
+L + + G Y C A+++I T F + E
Sbjct: 62 NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAE 103
>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 27.0 bits (58), Expect = 0.53
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 29 GLYQCIASNNIGESTSKNFIVNVIYP 54
+ C A N G + + +IYP
Sbjct: 84 HPFTCFAKNTHGIDAAY---IQLIYP 106
>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 26.3 bits (56), Expect = 0.76
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 18 LDLDRVTLKLAGLYQCIASNNIGESTSKNFI-VNVI 52
+ VT + G Y C+ S G S + + + V+
Sbjct: 70 ITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL 105
>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 26.1 bits (56), Expect = 0.85
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 20 LDRVTLKLAGLYQCIASNNIGESTSKNFI-VNVI 52
D ++ G Y C A N G + N + + +
Sbjct: 70 FDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV 103
>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32)
{Human (Homo sapiens), III [TaxId: 9606]}
Length = 89
Score = 25.7 bits (55), Expect = 1.1
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 20 LDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY 53
+ + TLK +G Y C +S+ + +
Sbjct: 55 IPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ 88
>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human
(Homo sapiens) [TaxId: 9606]}
Length = 74
Score = 25.2 bits (55), Expect = 1.2
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Query: 11 LLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY 53
LL + LDL + L G+Y+C ++ K V V Y
Sbjct: 30 LLSDITRLDLGKRILDPRGIYRCNGTDI---YKDKESTVQVHY 69
>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans)
[TaxId: 6239]}
Length = 93
Score = 24.9 bits (53), Expect = 2.1
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 31 YQCIASNNIGESTSKNFIVNV 51
Y+ N +GE + F V V
Sbjct: 73 YKLKVKNELGEDEAI-FEVIV 92
>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 84
Score = 24.7 bits (52), Expect = 2.5
Identities = 3/26 (11%), Positives = 7/26 (26%), Gaps = 1/26 (3%)
Query: 31 YQCIASNNIGESTSKNFIVNVIYPPE 56
+ C N + V+ +
Sbjct: 60 WTCTVLQNQK-KVEFKIDIVVLAFQK 84
>d1xmwa2 b.1.1.4 (A:113-178) CD3 epsilon chain ectodomain fragment
{Sheep (Ovis aries) [TaxId: 9940]}
Length = 66
Score = 24.0 bits (52), Expect = 2.7
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 10 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY 53
+ + + ++L+L + G+YQC +K+F + V Y
Sbjct: 28 QEVSDNKTLNLGKRIEDPRGMYQC-------GENAKSFTLQVYY 64
>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 24.1 bits (52), Expect = 3.3
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 10 ELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY 53
L +++ +L G+YQC S N K+ + V Y
Sbjct: 42 FLTEDKKKWNLGSNAKDPRGMYQCKGSQN------KSKPLQVYY 79
>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 110
Score = 24.4 bits (52), Expect = 3.9
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 5 FFSKIELLYNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIYPPEVSV 59
+ + + +L L + +K GLYQCI + + +N E+SV
Sbjct: 58 YMGRTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNS----ELSV 108
>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 86
Score = 23.7 bits (51), Expect = 5.1
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 6/40 (15%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVIY 53
+ + +L G YQC + + + V Y
Sbjct: 51 TKNTWNLGNNAKDPRGTYQCQGAKE------TSNPLQVYY 84
>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 115
Score = 23.9 bits (50), Expect = 5.6
Identities = 6/21 (28%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 31 YQCIASNNIGESTSKNFIVNV 51
Y C A N+ G S ++ +
Sbjct: 85 YNCTAWNSFG-SDTEIIRLKE 104
>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 23.7 bits (50), Expect = 5.9
Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 13 YNRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIVNVI 52
++E L ++ +G Y C+ N+ +
Sbjct: 56 QHKEKLWFVPAKVEDSGHYYCVVRNSSY-CLRIKISAKFV 94
>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 23.6 bits (50), Expect = 6.1
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 14 NRESLDLDRVTLKLAGLYQCIASNNIGESTSKNFIV 49
+ +L + + +L YQC+ E S V
Sbjct: 60 AKRTLTISQCSLADDAAYQCVVGG---EKCSTELFV 92
>d1kv7a2 b.6.1.3 (A:171-335) multi-copper oxidase CueO {Escherichia
coli [TaxId: 562]}
Length = 165
Score = 23.8 bits (51), Expect = 6.8
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 83 PAKRFDEGTRFDEGTVTAKVLQPFSERTLSVQDKIGPGPDSNLRPSAYMADAP-PTKL 139
+RF+ ++ V P S+ +++ P P ++P A A P L
Sbjct: 107 MGERFEVLVEVNDNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAISASGALPDTL 164
>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia)
[TaxId: 7123]}
Length = 111
Score = 23.9 bits (50), Expect = 7.0
Identities = 5/31 (16%), Positives = 9/31 (29%), Gaps = 3/31 (9%)
Query: 28 AGLYQCIASNNIGESTSKNFIVNVIYPPEVS 58
Y C A N + ++ V+
Sbjct: 78 IYKYVCTAKNAAV---DEEVVLVEYEIKGVT 105
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.396
Gapped
Lambda K H
0.267 0.0491 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 503,568
Number of extensions: 20676
Number of successful extensions: 88
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 65
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.8 bits)