Query psy12135
Match_columns 212
No_of_seqs 274 out of 1583
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 19:36:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12135.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12135hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0588 GpmA Phosphoglycerate 99.9 1.2E-26 2.6E-31 190.1 8.5 119 90-212 77-202 (230)
2 PRK14119 gpmA phosphoglyceromu 99.9 8.9E-22 1.9E-26 165.5 8.7 168 31-210 18-200 (228)
3 PRK14116 gpmA phosphoglyceromu 99.8 8.7E-21 1.9E-25 159.6 8.4 168 31-210 18-200 (228)
4 PRK14117 gpmA phosphoglyceromu 99.8 1.6E-20 3.4E-25 158.3 8.8 167 31-209 18-199 (230)
5 TIGR01258 pgm_1 phosphoglycera 99.8 2.8E-20 6.2E-25 158.2 9.1 161 42-210 24-199 (245)
6 PRK14118 gpmA phosphoglyceromu 99.8 5.6E-20 1.2E-24 154.6 9.0 167 32-210 18-199 (227)
7 PTZ00123 phosphoglycerate muta 99.8 8.8E-20 1.9E-24 154.3 8.1 162 41-210 11-187 (236)
8 COG0588 GpmA Phosphoglycerate 99.8 4.5E-20 9.7E-25 151.4 5.8 104 2-109 109-212 (230)
9 PRK14115 gpmA phosphoglyceromu 99.8 2.2E-19 4.8E-24 152.9 9.2 161 42-210 24-199 (247)
10 PRK14120 gpmA phosphoglyceromu 99.8 2.1E-19 4.4E-24 153.3 8.9 160 42-211 28-202 (249)
11 PRK01295 phosphoglyceromutase; 99.8 6.9E-19 1.5E-23 145.9 6.3 136 42-210 26-176 (206)
12 PRK01112 phosphoglyceromutase; 99.8 7.3E-19 1.6E-23 148.0 6.5 140 42-210 25-199 (228)
13 PRK13463 phosphatase PhoE; Pro 99.7 2.9E-18 6.2E-23 141.7 6.6 131 42-210 26-169 (203)
14 KOG0235|consensus 99.7 3.9E-18 8.6E-23 141.4 6.3 146 31-211 22-183 (214)
15 PRK15004 alpha-ribazole phosph 99.7 9.2E-18 2E-22 138.0 6.3 132 41-210 23-167 (199)
16 TIGR03848 MSMEG_4193 probable 99.7 1.7E-17 3.7E-22 136.8 6.8 133 43-210 25-170 (204)
17 PRK03482 phosphoglycerate muta 99.7 3.9E-17 8.5E-22 135.7 7.5 135 42-210 25-168 (215)
18 TIGR03162 ribazole_cobC alpha- 99.7 1.9E-16 4.1E-21 127.2 7.1 132 41-209 20-162 (177)
19 PRK13462 acid phosphatase; Pro 99.7 2.4E-16 5.1E-21 130.5 7.7 123 42-210 29-165 (203)
20 COG0406 phoE Broad specificity 99.6 1.2E-15 2.5E-20 125.9 7.5 131 42-209 26-170 (208)
21 PRK07238 bifunctional RNase H/ 99.6 2.3E-15 5E-20 134.9 6.8 129 42-209 195-337 (372)
22 PTZ00322 6-phosphofructo-2-kin 99.5 1.1E-14 2.4E-19 139.5 7.5 131 43-206 442-599 (664)
23 smart00855 PGAM Phosphoglycera 99.5 5E-14 1.1E-18 110.9 5.2 122 41-199 22-155 (155)
24 PF00300 His_Phos_1: Histidine 99.4 2E-13 4.3E-18 106.4 4.0 120 43-199 24-158 (158)
25 PTZ00122 phosphoglycerate muta 98.9 1.4E-09 3.1E-14 95.1 6.4 52 157-209 205-257 (299)
26 PTZ00123 phosphoglycerate muta 98.7 3.7E-08 8E-13 83.3 7.6 102 4-109 98-200 (236)
27 PRK14119 gpmA phosphoglyceromu 98.7 4.9E-08 1.1E-12 82.0 7.8 83 4-90 111-193 (228)
28 PRK14117 gpmA phosphoglyceromu 98.6 1.2E-07 2.5E-12 80.0 8.2 83 4-90 111-193 (230)
29 PRK14116 gpmA phosphoglyceromu 98.6 1.3E-07 2.9E-12 79.5 7.0 84 3-90 110-193 (228)
30 TIGR01258 pgm_1 phosphoglycera 98.6 1.8E-07 3.9E-12 79.7 7.5 83 4-90 110-192 (245)
31 PRK14118 gpmA phosphoglyceromu 98.4 9.1E-07 2E-11 74.4 7.3 50 41-90 143-192 (227)
32 KOG0234|consensus 98.4 7E-07 1.5E-11 81.0 6.9 51 156-211 352-402 (438)
33 PRK14120 gpmA phosphoglyceromu 98.4 1E-06 2.2E-11 75.2 6.9 81 4-90 114-194 (249)
34 PRK14115 gpmA phosphoglyceromu 98.3 1.7E-06 3.6E-11 73.9 7.1 50 41-90 143-192 (247)
35 KOG0235|consensus 98.1 6E-06 1.3E-10 68.9 6.5 71 39-109 124-194 (214)
36 PRK01112 phosphoglyceromutase; 98.1 7.8E-06 1.7E-10 68.9 6.8 53 38-90 140-192 (228)
37 PRK13463 phosphatase PhoE; Pro 98.0 1.4E-05 3E-10 65.9 6.3 52 37-90 111-162 (203)
38 PRK13462 acid phosphatase; Pro 97.9 1.7E-05 3.7E-10 65.6 5.6 46 42-89 112-157 (203)
39 TIGR03162 ribazole_cobC alpha- 97.9 2.5E-05 5.5E-10 62.4 6.1 51 38-90 106-156 (177)
40 TIGR03848 MSMEG_4193 probable 97.9 2.6E-05 5.6E-10 64.1 6.2 53 38-90 108-163 (204)
41 PRK01295 phosphoglyceromutase; 97.9 3.3E-05 7.2E-10 63.9 6.7 51 40-90 119-169 (206)
42 PRK15004 alpha-ribazole phosph 97.9 2.9E-05 6.3E-10 63.6 6.2 49 40-90 112-160 (199)
43 PRK03482 phosphoglycerate muta 97.9 4.2E-05 9.2E-10 63.4 6.7 48 41-90 114-161 (215)
44 COG0406 phoE Broad specificity 97.6 0.00023 5E-09 58.4 6.7 52 37-90 113-164 (208)
45 cd07067 HP_PGM_like Histidine 97.5 0.00021 4.5E-09 55.4 5.9 40 167-208 84-123 (153)
46 PF00300 His_Phos_1: Histidine 97.5 0.00021 4.4E-09 55.2 5.8 47 39-86 112-158 (158)
47 smart00855 PGAM Phosphoglycera 97.5 0.00014 3.1E-09 56.8 4.3 47 39-85 108-154 (155)
48 PRK07238 bifunctional RNase H/ 97.5 0.00024 5.3E-09 63.8 6.2 48 41-90 284-331 (372)
49 KOG3734|consensus 97.3 0.00044 9.6E-09 59.6 6.0 51 156-208 168-218 (272)
50 cd07040 HP Histidine phosphata 97.2 0.00068 1.5E-08 52.1 5.7 42 167-208 82-123 (153)
51 PTZ00322 6-phosphofructo-2-kin 96.9 0.0018 4E-08 62.6 6.4 50 37-90 546-596 (664)
52 PTZ00122 phosphoglycerate muta 95.4 0.024 5.2E-07 49.8 4.8 47 43-90 204-251 (299)
53 KOG4609|consensus 95.2 0.0059 1.3E-07 51.1 0.2 43 167-209 197-242 (284)
54 PRK06193 hypothetical protein; 94.8 0.043 9.4E-07 45.7 4.4 45 157-205 132-176 (206)
55 KOG4754|consensus 91.9 0.36 7.9E-06 40.5 5.2 44 158-204 157-200 (248)
56 KOG3734|consensus 91.8 0.37 8E-06 41.8 5.3 45 43-89 168-212 (272)
57 PRK15416 lipopolysaccharide co 91.7 0.3 6.5E-06 40.6 4.6 48 159-208 128-175 (201)
58 KOG0234|consensus 91.7 0.36 7.8E-06 44.4 5.4 48 37-89 346-393 (438)
59 cd07067 HP_PGM_like Histidine 90.8 0.48 1E-05 36.3 4.7 41 46-90 78-118 (153)
60 TIGR00249 sixA phosphohistidin 88.4 1 2.2E-05 35.3 5.0 24 183-206 99-122 (152)
61 cd07040 HP Histidine phosphata 88.3 0.91 2E-05 34.4 4.6 37 54-90 82-118 (153)
62 PRK06193 hypothetical protein; 66.7 12 0.00026 31.2 4.8 40 45-88 133-172 (206)
63 PRK10848 phosphohistidine phos 61.8 17 0.00036 28.6 4.7 23 183-205 99-121 (159)
64 PRK04946 hypothetical protein; 54.4 45 0.00098 27.2 6.1 45 158-206 101-148 (181)
65 PF12048 DUF3530: Protein of u 52.8 44 0.00095 29.3 6.2 43 164-209 175-217 (310)
66 PF13422 DUF4110: Domain of un 50.7 28 0.00061 25.4 3.9 22 158-179 14-35 (96)
67 KOG4754|consensus 48.3 49 0.0011 28.0 5.4 44 45-91 157-200 (248)
68 PF11658 DUF3260: Protein of u 42.7 50 0.0011 31.3 5.1 53 45-102 370-425 (518)
69 cd04256 AAK_P5CS_ProBA AAK_P5C 42.1 36 0.00079 29.5 4.0 31 164-198 31-61 (284)
70 TIGR03368 cellulose_yhjU cellu 41.5 51 0.0011 31.1 5.0 53 45-102 367-422 (518)
71 KOG4609|consensus 40.0 45 0.00099 28.3 4.0 46 49-94 192-243 (284)
72 smart00195 DSPc Dual specifici 39.5 71 0.0015 23.8 4.8 35 159-197 57-91 (138)
73 PF01764 Lipase_3: Lipase (cla 38.8 1.1E+02 0.0025 22.4 5.9 39 164-204 45-85 (140)
74 COG1121 ZnuC ABC-type Mn/Zn tr 38.3 30 0.00065 29.8 2.8 13 182-194 187-199 (254)
75 PRK15416 lipopolysaccharide co 37.0 43 0.00093 27.8 3.4 42 46-89 128-169 (201)
76 PF02697 DUF217: Uncharacteriz 36.4 29 0.00064 23.8 2.0 14 158-171 20-33 (71)
77 TIGR03729 acc_ester putative p 34.3 79 0.0017 26.1 4.7 40 157-198 139-178 (239)
78 cd07397 MPP_DevT Myxococcus xa 33.7 48 0.001 28.2 3.3 35 159-198 126-160 (238)
79 PRK15088 PTS system mannose-sp 31.6 3.2E+02 0.0069 24.2 8.3 21 73-93 4-24 (322)
80 TIGR00824 EIIA-man PTS system, 30.9 1.9E+02 0.004 21.4 5.8 42 157-203 36-80 (116)
81 COG1134 TagH ABC-type polysacc 30.8 83 0.0018 27.0 4.2 34 163-200 180-214 (249)
82 cd00741 Lipase Lipase. Lipase 30.6 1.9E+02 0.0041 21.8 6.0 41 162-204 7-49 (153)
83 PF14606 Lipase_GDSL_3: GDSL-l 30.5 47 0.001 27.0 2.6 31 161-193 72-102 (178)
84 PRK12314 gamma-glutamyl kinase 30.3 68 0.0015 27.5 3.7 14 182-195 45-58 (266)
85 PF03610 EIIA-man: PTS system 29.6 2.2E+02 0.0048 20.6 6.2 45 157-206 35-82 (116)
86 cd00519 Lipase_3 Lipase (class 28.8 1.4E+02 0.003 24.3 5.3 43 160-204 105-149 (229)
87 TIGR01166 cbiO cobalt transpor 26.8 57 0.0012 25.8 2.5 24 166-193 163-186 (190)
88 KOG2369|consensus 26.6 1.4E+02 0.003 28.1 5.2 44 158-203 157-200 (473)
89 PF02604 PhdYeFM_antitox: Anti 26.3 1.3E+02 0.0027 19.9 3.8 31 161-195 5-35 (75)
90 COG1598 Predicted nuclease of 26.0 1.2E+02 0.0027 20.5 3.8 24 156-179 27-50 (73)
91 PF09370 TIM-br_sig_trns: TIM- 25.6 58 0.0012 28.3 2.4 36 158-197 190-225 (268)
92 PRK06635 aspartate kinase; Rev 25.3 90 0.002 28.1 3.8 44 158-203 9-54 (404)
93 PRK13696 hypothetical protein; 25.2 60 0.0013 21.8 1.9 13 158-170 21-33 (62)
94 PF08471 Ribonuc_red_2_N: Clas 24.7 97 0.0021 22.5 3.1 21 157-177 46-67 (93)
95 PLN02517 phosphatidylcholine-s 24.6 1.2E+02 0.0026 29.6 4.5 35 158-194 188-222 (642)
96 cd03246 ABCC_Protease_Secretio 24.6 76 0.0016 24.8 2.8 14 183-196 145-158 (173)
97 cd03238 ABC_UvrA The excision 24.2 77 0.0017 25.3 2.8 14 183-196 138-151 (176)
98 PF01676 Metalloenzyme: Metall 24.2 1.1E+02 0.0024 25.8 3.9 36 159-195 160-197 (252)
99 PF08665 PglZ: PglZ domain; I 23.9 1E+02 0.0023 24.5 3.5 15 182-196 161-176 (181)
100 TIGR02673 FtsE cell division A 23.7 72 0.0016 25.7 2.6 13 183-195 186-198 (214)
101 PF00782 DSPc: Dual specificit 23.5 80 0.0017 23.2 2.6 36 158-197 51-86 (133)
102 TIGR01092 P5CS delta l-pyrroli 23.1 1.1E+02 0.0023 30.3 4.1 30 165-198 30-59 (715)
103 COG1136 SalX ABC-type antimicr 22.9 1.8E+02 0.004 24.5 4.9 32 166-200 178-209 (226)
104 PF06180 CbiK: Cobalt chelatas 22.5 54 0.0012 28.3 1.7 37 158-195 116-152 (262)
105 TIGR00960 3a0501s02 Type II (G 22.3 76 0.0017 25.6 2.5 13 183-195 187-199 (216)
106 TIGR01552 phd_fam prevent-host 21.7 2.1E+02 0.0045 17.5 4.0 30 161-195 3-32 (52)
107 PRK13538 cytochrome c biogenes 21.4 82 0.0018 25.3 2.5 14 183-196 178-191 (204)
108 cd03226 ABC_cobalt_CbiO_domain 21.4 83 0.0018 25.2 2.5 26 166-195 162-187 (205)
109 PF00156 Pribosyltran: Phospho 21.3 79 0.0017 22.8 2.2 25 183-207 87-115 (125)
110 cd03225 ABC_cobalt_CbiO_domain 21.0 90 0.002 25.0 2.7 26 166-195 170-195 (211)
111 PRK13540 cytochrome c biogenes 20.9 93 0.002 24.9 2.7 26 166-195 163-188 (200)
112 cd03216 ABC_Carb_Monos_I This 20.8 86 0.0019 24.3 2.4 26 166-195 118-143 (163)
113 COG2390 DeoR Transcriptional r 20.7 3.3E+02 0.0073 24.2 6.3 41 164-209 99-139 (321)
114 cd03235 ABC_Metallic_Cations A 20.6 93 0.002 25.0 2.7 26 166-195 168-193 (213)
115 cd03292 ABC_FtsE_transporter F 20.5 85 0.0018 25.2 2.4 26 166-195 172-197 (214)
116 PF05991 NYN_YacP: YacP-like N 20.2 2.4E+02 0.0051 22.3 4.9 39 157-202 74-112 (166)
117 cd03231 ABC_CcmA_heme_exporter 20.1 83 0.0018 25.2 2.3 25 166-194 161-185 (201)
No 1
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=99.93 E-value=1.2e-26 Score=190.06 Aligned_cols=119 Identities=41% Similarity=0.733 Sum_probs=111.4
Q ss_pred hhcCCCccccccc--cccCcch-----hhhHHHHHHHHhccCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCH
Q psy12135 90 VHVGRPWGLQSHV--FLLGINN-----NFARFQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESL 162 (212)
Q Consensus 90 ipi~~~~~LrE~~--~wEGlt~-----~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~gES~ 162 (212)
+|+...|+|+|++ .|+|++. +|+++++..||++|+++||+++.+.++++- +|++|+ ..+....|.+||+
T Consensus 77 ipv~kswrLNERhYG~LqGlnK~~t~~kyGeeqv~~wRRsydi~PP~~~~~~~~~~~--~d~ry~--~~~~~~~p~~EsL 152 (230)
T COG0588 77 IPVIKSWRLNERHYGALQGLNKAETAAKYGEEQVLIWRRSYDIPPPKLEKDDERSPH--RDRRYA--HLDIGGLPLTESL 152 (230)
T ss_pred cchhhHHHhhhhhhhhhhcCChHHHHHHHhHHHHHHHHHhcCCCCCCcccccccccc--cccccc--cccccCCCccchH
Confidence 7899999999999 9999999 899999999999999999999999998886 788998 6666677889999
Q ss_pred HHHHHhHHHHHHHHhHhhhcCCCEEEEEeccHHHHHHHHHhhCCCCCCCC
Q psy12135 163 KETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLREPV 212 (212)
Q Consensus 163 ~~v~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ir~ll~~l~g~~~~~~~ 212 (212)
+++.+|+.+||++.|.+....|++||||+||++||+|+++|.|+|.++|+
T Consensus 153 kdt~~Rv~Pyw~~~I~p~l~~Gk~VlI~AHGNSlRaLiK~L~~iSd~dI~ 202 (230)
T COG0588 153 KDTVERVLPYWEDDIAPNLKSGKNVLIVAHGNSLRALIKYLEGISDEDIL 202 (230)
T ss_pred HHHHHHhhHHHHHHhhHHHhCCCeEEEEecchhHHHHHHHHhCCCHHHhh
Confidence 99999999999999999999999999999999999999999999998874
No 2
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=99.86 E-value=8.9e-22 Score=165.47 Aligned_cols=168 Identities=27% Similarity=0.450 Sum_probs=112.7
Q ss_pred CcccCCCCCCCCCCCCccHHHHHHHHHHHHH-------Hhh-hhhhhcCceEEEEechHHHHHHHHhhhcCCCccccccc
Q psy12135 31 PNFKIDGPNEDQFPHTESLKETIMRVLPYWN-------ENI-ATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWGLQSHV 102 (212)
Q Consensus 31 ~~~~~~~~~~~~~p~gEsl~~~~~Rv~~~~~-------~ii-s~~~ra~~tvliVaHg~~irall~~ipi~~~~~LrE~~ 102 (212)
.+|+|. .+.|.++...+..+++..++. .++ ||++|+.+|+.+++... . ...+++..+++|+|++
T Consensus 18 ~~~~G~----~D~pLt~~G~~QA~~l~~~L~~~~~~~d~i~sSpL~Ra~~TA~~i~~~~--~--~~~~~~~~~~~LrE~~ 89 (228)
T PRK14119 18 NLFTGW----EDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTES--K--QQWIPVYKSWRLNERH 89 (228)
T ss_pred CCccCC----CCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEeCccHHHHHHHHHHHHhc--c--cCCCCeeECCCccccc
Confidence 356653 356777777666666655443 223 67778888876654210 0 0125777889999999
Q ss_pred --cccCcch-----hhhHHHHHHHHhccCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCHHHHHHhHHHHHHH
Q psy12135 103 --FLLGINN-----NFARFQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNE 175 (212)
Q Consensus 103 --~wEGlt~-----~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~gES~~~v~~R~~~~~~~ 175 (212)
+|||+++ ++++..+..|+++++..||+........ ...++.|. ++....+|+|||+.++.+|+.++|++
T Consensus 90 fG~weG~~~~ei~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~--~~~~~~~~--~~~~~~~p~GES~~~~~~Rv~~~l~~ 165 (228)
T PRK14119 90 YGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREA--YLADRRYN--HLDKRMMPYSESLKDTLVRVIPFWTD 165 (228)
T ss_pred cccccCCcHHHHHHHccHHHHHHHHcccccCCCccccccccc--cccccccc--ccccccCCCCCCHHHHHHHHHHHHHH
Confidence 9999999 5665567789887776665432211100 00122222 22233468999999999999999999
Q ss_pred HhHhhhcCCCEEEEEeccHHHHHHHHHhhCCCCCC
Q psy12135 176 NIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLRE 210 (212)
Q Consensus 176 ~i~~~~~~~~~vliVsHG~~ir~ll~~l~g~~~~~ 210 (212)
++......+++|||||||++||+++++++|++.++
T Consensus 166 ~~~~~~~~~~~vlvVsHg~vir~l~~~~~~~~~~~ 200 (228)
T PRK14119 166 HISQYLLDGQTVLVSAHGNSIRALIKYLEDVSDED 200 (228)
T ss_pred HHHhhccCCCeEEEEeChHHHHHHHHHHhCCCHHH
Confidence 76532236789999999999999999999987653
No 3
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=99.83 E-value=8.7e-21 Score=159.58 Aligned_cols=168 Identities=29% Similarity=0.451 Sum_probs=108.3
Q ss_pred CcccCCCCCCCCCCCCccHHHHHHHHHHHHH-------Hhh-hhhhhcCceEEEEechHHHHHHHHhhhcCCCccccccc
Q psy12135 31 PNFKIDGPNEDQFPHTESLKETIMRVLPYWN-------ENI-ATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWGLQSHV 102 (212)
Q Consensus 31 ~~~~~~~~~~~~~p~gEsl~~~~~Rv~~~~~-------~ii-s~~~ra~~tvliVaHg~~irall~~ipi~~~~~LrE~~ 102 (212)
.+|+|. .+.|..+...+..+++...+. .++ ||+.|+.+|+.+++... . ...+|+..+++|+|++
T Consensus 18 ~~~~G~----~D~pLt~~G~~QA~~l~~~L~~~~~~~d~i~sSpL~Ra~qTA~~i~~~~--~--~~~~~~~~~~~LrE~~ 89 (228)
T PRK14116 18 NQFTGW----VDVDLSEKGVEEAKKAGRLIKEAGLEFDQAYTSVLTRAIKTLHYALEES--D--QLWIPETKTWRLNERH 89 (228)
T ss_pred cCcCCC----CCCCcCHHHHHHHHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHHhc--C--cCCCCcccCccccccc
Confidence 356653 356777777766666655443 223 67778888866553211 0 0125677889999999
Q ss_pred --cccCcch-----hhhHHHHHHHHhccCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCHHHHHHhHHHHHHH
Q psy12135 103 --FLLGINN-----NFARFQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNE 175 (212)
Q Consensus 103 --~wEGlt~-----~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~gES~~~v~~R~~~~~~~ 175 (212)
+|||+++ ++++..++.|+++++..|+.++..+-... ..+..|. ++....+|||||+.+|.+|+..+|++
T Consensus 90 fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~pgGEs~~~~~~Rv~~~l~~ 165 (228)
T PRK14116 90 YGALQGLNKKETAEKYGDEQVHIWRRSYDVLPPLLDADDEGSA--AKDRRYA--NLDPRIIPGGENLKVTLERVIPFWED 165 (228)
T ss_pred chhhcCCCHHHHHHHhhhhHHHHHhhcccccCccccccccccc--ccchhhh--ccCccCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999 45555567888765544332211110000 0011111 11123468999999999999999999
Q ss_pred HhHhhhcCCCEEEEEeccHHHHHHHHHhhCCCCCC
Q psy12135 176 NIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLRE 210 (212)
Q Consensus 176 ~i~~~~~~~~~vliVsHG~~ir~ll~~l~g~~~~~ 210 (212)
++....+.+++|||||||++||+++++++|++.++
T Consensus 166 ~i~~~~~~~~~vlvVsHg~vir~ll~~~~~~~~~~ 200 (228)
T PRK14116 166 HIAPDLLDGKNVIIAAHGNSLRALTKYIENISDED 200 (228)
T ss_pred HHHHhhcCCCeEEEEcChHHHHHHHHHHhCCCHHH
Confidence 66432235789999999999999999999998654
No 4
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=99.83 E-value=1.6e-20 Score=158.29 Aligned_cols=167 Identities=33% Similarity=0.508 Sum_probs=109.9
Q ss_pred CcccCCCCCCCCCCCCccHHHHHHHHHHHHH-------Hhh-hhhhhcCceEEEEechHHHHHHHHhhhcCCCccccccc
Q psy12135 31 PNFKIDGPNEDQFPHTESLKETIMRVLPYWN-------ENI-ATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWGLQSHV 102 (212)
Q Consensus 31 ~~~~~~~~~~~~~p~gEsl~~~~~Rv~~~~~-------~ii-s~~~ra~~tvliVaHg~~irall~~ipi~~~~~LrE~~ 102 (212)
.+|+|. .+.|.++...+..+++...+. .++ ||+.|+.+|+.+++... . ...+++..+++|+|++
T Consensus 18 ~~~qG~----~D~~Lt~~G~~qa~~~~~~l~~~~~~~~~i~sSpl~Ra~~TA~~i~~~~--~--~~~~~~~~~~~LrE~~ 89 (230)
T PRK14117 18 NLFTGW----ADVDLSEKGTQQAIDAGKLIKEAGIEFDLAFTSVLKRAIKTTNLALEAS--D--QLWVPVEKSWRLNERH 89 (230)
T ss_pred CCcCCC----CCCCcCHHHHHHHHHHHHHHHHcCCCCCEEEECCcHHHHHHHHHHHHhc--c--cCCCCceeCCcccccc
Confidence 356653 346677777776666655443 222 67778888865543110 0 0136777789999999
Q ss_pred --cccCcch-----hhhHHHHHHHHhccCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCHHHHHHhHHHHHHH
Q psy12135 103 --FLLGINN-----NFARFQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNE 175 (212)
Q Consensus 103 --~wEGlt~-----~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~gES~~~v~~R~~~~~~~ 175 (212)
.|||+++ ++++..+..|++++...||++..+..+.+. .++.|. ++....+|+|||+.++.+|+.++|++
T Consensus 90 fG~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~p~GEs~~~~~~Rv~~~l~~ 165 (230)
T PRK14117 90 YGGLTGKNKAEAAEQFGDEQVHIWRRSYDVLPPAMAKDDEYSAH--TDRRYA--SLDDSVIPDAENLKVTLERALPFWED 165 (230)
T ss_pred chhhcCCCHHHHHHHccHHHHHHHhcccccCCCccccccccccc--cccccc--ccccCCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999 456555678888766656544322111000 000111 11223478999999999999999999
Q ss_pred HhHhhhcCCCEEEEEeccHHHHHHHHHhhCCCCC
Q psy12135 176 NIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLR 209 (212)
Q Consensus 176 ~i~~~~~~~~~vliVsHG~~ir~ll~~l~g~~~~ 209 (212)
++......+++|||||||++||+++++++|++.+
T Consensus 166 ~~~~~~~~~~~vlvVsHg~~ir~ll~~~lg~~~~ 199 (230)
T PRK14117 166 KIAPALKDGKNVFVGAHGNSIRALVKHIKGLSDD 199 (230)
T ss_pred HHHhhccCCCEEEEEeChHHHHHHHHHHhCcCHH
Confidence 6543323468999999999999999999998764
No 5
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=99.82 E-value=2.8e-20 Score=158.17 Aligned_cols=161 Identities=35% Similarity=0.576 Sum_probs=110.2
Q ss_pred CCCCCccHHHHHHHHHHHHH-------Hhh-hhhhhcCceEEEEechHHHHHHHHhhhcCCCccccccc--cccCcch--
Q psy12135 42 QFPHTESLKETIMRVLPYWN-------ENI-ATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWGLQSHV--FLLGINN-- 109 (212)
Q Consensus 42 ~~p~gEsl~~~~~Rv~~~~~-------~ii-s~~~ra~~tvliVaHg~~irall~~ipi~~~~~LrE~~--~wEGlt~-- 109 (212)
+.|.++...+..+++...+. .++ ||++|+.+|+.+++...- ...+++..+.+|+|++ +|||+++
T Consensus 24 D~~Lt~~G~~QA~~la~~L~~~~~~~d~iysSpl~Ra~qTA~ii~~~~~----~~~~~i~~~~~L~E~~~G~~eG~~~~e 99 (245)
T TIGR01258 24 DVKLSEKGQQEAKRAGELLKEEGYEFDVAYTSLLKRAIHTLNIALDELD----QLWIPVKKSWRLNERHYGALQGLNKAE 99 (245)
T ss_pred CCCcCHHHHHHHHHHHHHHHhcCCCCCEEEEcChHHHHHHHHHHHHhcC----CCCCCeeeCcccccccCCCCcCCCHHH
Confidence 45677776666666555443 222 677788888777654210 0014666788999999 9999998
Q ss_pred ---hhhHHHHHHHHhccCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCHHHHHHhHHHHHHHHhHhhhcCCCE
Q psy12135 110 ---NFARFQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKK 186 (212)
Q Consensus 110 ---~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~gES~~~v~~R~~~~~~~~i~~~~~~~~~ 186 (212)
.+++..+..|...+...||.|....+..+. .|+.|. ......+|+|||+.++.+|+.++|++++......+++
T Consensus 100 i~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~~--~d~~y~--~~~~~~~p~GES~~~~~~Rv~~~l~~l~~~~~~~~~~ 175 (245)
T TIGR01258 100 TAAKYGEEQVNIWRRSFDVPPPPIDESDPRSPH--NDPRYA--HLDPKVLPLTESLKDTIARVLPYWNDEIAPDLLSGKR 175 (245)
T ss_pred HHHHhhHHHHHHHHhhccCCCCcCCcccccccc--cChhhh--cCCcccCCCCCCHHHHHHHHHHHHHHHHhhhhcCCCE
Confidence 455555778888777766655554432111 122332 1111236899999999999999999965433346789
Q ss_pred EEEEeccHHHHHHHHHhhCCCCCC
Q psy12135 187 VLVVTHGTSLRGLVKHIERKSLRE 210 (212)
Q Consensus 187 vliVsHG~~ir~ll~~l~g~~~~~ 210 (212)
|||||||++||+++++++|++.++
T Consensus 176 vlvVsHg~vir~l~~~l~~l~~~~ 199 (245)
T TIGR01258 176 VLIVAHGNSLRALVKHLEGISDEE 199 (245)
T ss_pred EEEEcChHHHHHHHHHHHCcCHHH
Confidence 999999999999999999988664
No 6
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=99.81 E-value=5.6e-20 Score=154.59 Aligned_cols=167 Identities=32% Similarity=0.465 Sum_probs=106.9
Q ss_pred cccCCCCCCCCCCCCccHHHHHHHHHHHHHH-------hh-hhhhhcCceEEEEechHHHHHHHHhhhcCCCccccccc-
Q psy12135 32 NFKIDGPNEDQFPHTESLKETIMRVLPYWNE-------NI-ATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWGLQSHV- 102 (212)
Q Consensus 32 ~~~~~~~~~~~~p~gEsl~~~~~Rv~~~~~~-------ii-s~~~ra~~tvliVaHg~~irall~~ipi~~~~~LrE~~- 102 (212)
+|+|. .+.|.++...+..+++...+.+ ++ ||+.|+.+|+.+++...- ...+|+..+++|+|++
T Consensus 18 ~~~G~----~d~~Lt~~G~~qa~~~~~~l~~~~~~~d~i~sSpl~Ra~~TA~~i~~~~~----~~~~~~~~~~~LrE~~f 89 (227)
T PRK14118 18 LFTGW----RDVNLTERGVEEAKAAGKKLKEAGYEFDIAFTSVLTRAIKTCNIVLEESN----QLWIPQVKNWRLNERHY 89 (227)
T ss_pred CcCCC----CCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHHHHHhcC----CCCCCeecCCccccccC
Confidence 56652 3567777776666665554432 22 677788888665542110 0025667788999999
Q ss_pred -cccCcch-----hhhHHHHHHHHhccCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCHHHHHHhHHHHHHHH
Q psy12135 103 -FLLGINN-----NFARFQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNEN 176 (212)
Q Consensus 103 -~wEGlt~-----~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~gES~~~v~~R~~~~~~~~ 176 (212)
+|||+++ ++++..+..|..+++..||.+....+.-. ..+..|. ......+|||||+.++.+|+.++|+++
T Consensus 90 G~wEG~~~~ei~~~~p~~~~~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~p~GEs~~~~~~Rv~~~l~~~ 165 (227)
T PRK14118 90 GALQGLDKKATAEQYGDEQVHIWRRSYDTLPPDLDPQDPNSA--HNDRRYA--HLPADVVPDAENLKVTLERVLPFWEDQ 165 (227)
T ss_pred ccccCCcHHHHHHHhhHHHHHHHHhccccCCCcccccccccc--ccchhhc--cCcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999 45555567788765544432222221100 0000010 000123689999999999999999996
Q ss_pred hHhhhcCCCEEEEEeccHHHHHHHHHhhCCCCCC
Q psy12135 177 IATEIKQGKKVLVVTHGTSLRGLVKHIERKSLRE 210 (212)
Q Consensus 177 i~~~~~~~~~vliVsHG~~ir~ll~~l~g~~~~~ 210 (212)
+....+.+++|||||||++||+++++++|++.++
T Consensus 166 ~~~~~~~~~~vlvVsHggvir~ll~~~l~~~~~~ 199 (227)
T PRK14118 166 IAPALLSGKRVLVAAHGNSLRALAKHIEGISDAD 199 (227)
T ss_pred HhhhhcCCCeEEEEeCHHHHHHHHHHHhCCCHHH
Confidence 6432246789999999999999999999988653
No 7
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=99.80 E-value=8.8e-20 Score=154.26 Aligned_cols=162 Identities=36% Similarity=0.604 Sum_probs=107.6
Q ss_pred CCCCCCccHHHHHHHHHHHHH-------Hh-hhhhhhcCceEEEEechHHHHHHHHhhhcCCCccccccc--cccCcch-
Q psy12135 41 DQFPHTESLKETIMRVLPYWN-------EN-IATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWGLQSHV--FLLGINN- 109 (212)
Q Consensus 41 ~~~p~gEsl~~~~~Rv~~~~~-------~i-is~~~ra~~tvliVaHg~~irall~~ipi~~~~~LrE~~--~wEGlt~- 109 (212)
.+.|..|...+..+++...+. .+ .||+.|+.+|+.+++.+.- ...+++..+.+|+|++ .|||+++
T Consensus 11 ~D~pLTe~G~~QA~~l~~~L~~~~~~~d~iysSpl~Ra~qTA~~i~~~~~----~~~~~~~~~~~L~E~~~G~~EG~~~~ 86 (236)
T PTZ00123 11 TDVPLSEKGVQEAREAGKLLKEKGFRFDVVYTSVLKRAIKTAWIVLEELG----QLHVPVIKSWRLNERHYGALQGLNKS 86 (236)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCCCEEEECChHHHHHHHHHHHHhcC----CCCCCceeCchhhhcccccccCCCHH
Confidence 356777777777776655553 22 3677788888665543210 0014667788999999 9999999
Q ss_pred ----hhhHHHHHHHHhccCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCHHHHHHhHHHHHHHHhHhhhcCCC
Q psy12135 110 ----NFARFQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGK 185 (212)
Q Consensus 110 ----~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~gES~~~v~~R~~~~~~~~i~~~~~~~~ 185 (212)
++++..+..|..++...||........|+. .++.|. ......+|+|||+.++.+|+.++|++++......++
T Consensus 87 ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~p~gES~~~~~~Rv~~~l~~li~~~~~~~~ 162 (236)
T PTZ00123 87 ETAEKHGEEQVKIWRRSYDIPPPPLEKSDERYPG--NDPVYK--DIPKDALPNTECLKDTVERVLPYWEDHIAPDILAGK 162 (236)
T ss_pred HHHHHccHHHHHHHhcccCCCCCCcccccccccc--cchhhh--ccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 555555677887666555433222222211 111111 111123689999999999999999996544334578
Q ss_pred EEEEEeccHHHHHHHHHhhCCCCCC
Q psy12135 186 KVLVVTHGTSLRGLVKHIERKSLRE 210 (212)
Q Consensus 186 ~vliVsHG~~ir~ll~~l~g~~~~~ 210 (212)
+|||||||++|++++++++|++.+.
T Consensus 163 ~vliVsHG~vir~ll~~l~~~~~~~ 187 (236)
T PTZ00123 163 KVLVAAHGNSLRALVKYLDKMSEED 187 (236)
T ss_pred eEEEEeCHHHHHHHHHHHhCCCHHH
Confidence 9999999999999999999988653
No 8
>COG0588 GpmA Phosphoglycerate mutase 1 [Carbohydrate transport and metabolism]
Probab=99.80 E-value=4.5e-20 Score=151.44 Aligned_cols=104 Identities=40% Similarity=0.653 Sum_probs=90.4
Q ss_pred ceeEEecCCCCCCCCCCCCCccCccccCCCcccCCCCCCCCCCCCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechH
Q psy12135 2 SVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGT 81 (212)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~ 81 (212)
+|++||||||++||+++++.+|+|. ++++|+. +.....|.+||++++.+|+.+||++.|+|....++||+|+|||.
T Consensus 109 qv~~wRRsydi~PP~~~~~~~~~~~--~d~ry~~--~~~~~~p~~EsLkdt~~Rv~Pyw~~~I~p~l~~Gk~VlI~AHGN 184 (230)
T COG0588 109 QVLIWRRSYDIPPPKLEKDDERSPH--RDRRYAH--LDIGGLPLTESLKDTVERVLPYWEDDIAPNLKSGKNVLIVAHGN 184 (230)
T ss_pred HHHHHHHhcCCCCCCcccccccccc--ccccccc--ccccCCCccchHHHHHHHhhHHHHHHhhHHHhCCCeEEEEecch
Confidence 6899999999999999999999998 8899995 45567889999999999999999999999889999999999999
Q ss_pred HHHHHHHhhhcCCCccccccccccCcch
Q psy12135 82 SLRGLILKVHVGRPWGLQSHVFLLGINN 109 (212)
Q Consensus 82 ~irall~~ipi~~~~~LrE~~~wEGlt~ 109 (212)
++||++.++.-..+..+.+.+-=.|.++
T Consensus 185 SlRaLiK~L~~iSd~dI~~l~IPtg~Pl 212 (230)
T COG0588 185 SLRALIKYLEGISDEDILDLNIPTGIPL 212 (230)
T ss_pred hHHHHHHHHhCCCHHHhhhcccCCCCcE
Confidence 9999999987666666655553345544
No 9
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=99.79 E-value=2.2e-19 Score=152.89 Aligned_cols=161 Identities=36% Similarity=0.595 Sum_probs=106.1
Q ss_pred CCCCCccHHHHHHHHHHHHH-------Hhh-hhhhhcCceEEEEechHHHHHHHHhhhcCCCccccccc--cccCcch--
Q psy12135 42 QFPHTESLKETIMRVLPYWN-------ENI-ATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWGLQSHV--FLLGINN-- 109 (212)
Q Consensus 42 ~~p~gEsl~~~~~Rv~~~~~-------~ii-s~~~ra~~tvliVaHg~~irall~~ipi~~~~~LrE~~--~wEGlt~-- 109 (212)
+.|.++...+..+++..++. .++ ||+.|+.+|+.++++..- +..+++..+.+|+|++ +|||+++
T Consensus 24 D~pLte~G~~QA~~la~~L~~~~~~~d~IysSpl~Ra~qTA~~i~~~~~----~~~~~~~~~~~L~E~~fG~~eG~~~~e 99 (247)
T PRK14115 24 DVDLSEKGVSEAKAAGKLLKEEGYTFDVAYTSVLKRAIRTLWIVLDELD----QMWLPVEKSWRLNERHYGALQGLNKAE 99 (247)
T ss_pred CCCcCHHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHHcC----CCCCCceECccccccccccccCCCHHH
Confidence 45666766666665544443 223 677788888766653210 0014667789999999 9999999
Q ss_pred ---hhhHHHHHHHHhccCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCHHHHHHhHHHHHHHHhHhhhcCCCE
Q psy12135 110 ---NFARFQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKK 186 (212)
Q Consensus 110 ---~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~gES~~~v~~R~~~~~~~~i~~~~~~~~~ 186 (212)
++++..+..|.+++...||.+....+.++. .|+.|. ......+|+|||+.++.+|+..+|++++......+++
T Consensus 100 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~p~GES~~~~~~Rv~~~l~~~i~~~~~~~~~ 175 (247)
T PRK14115 100 TAAKYGDEQVKIWRRSYDVPPPALEKDDERYPG--HDPRYA--KLPEEELPLTESLKDTIARVLPYWNETIAPQLKSGKR 175 (247)
T ss_pred HHHHhhHHHHHHHhcccccCCCccccccccccc--ccchhh--cccCCCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 445455778887665544332222221110 122232 1111236899999999999999999966533346789
Q ss_pred EEEEeccHHHHHHHHHhhCCCCCC
Q psy12135 187 VLVVTHGTSLRGLVKHIERKSLRE 210 (212)
Q Consensus 187 vliVsHG~~ir~ll~~l~g~~~~~ 210 (212)
|||||||++|+++++++++++.++
T Consensus 176 vlvVtHggvir~l~~~ll~~~~~~ 199 (247)
T PRK14115 176 VLIAAHGNSLRALVKYLDNISDEE 199 (247)
T ss_pred EEEEeChHHHHHHHHHHhCCCHHH
Confidence 999999999999999999988754
No 10
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=99.79 E-value=2.1e-19 Score=153.26 Aligned_cols=160 Identities=32% Similarity=0.536 Sum_probs=107.5
Q ss_pred CCCCCccHHHHHHHHHHHHHH-------hh-hhhhhcCceEEEEechHHHHHHHHhhhcCCCccccccc--cccCcch--
Q psy12135 42 QFPHTESLKETIMRVLPYWNE-------NI-ATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWGLQSHV--FLLGINN-- 109 (212)
Q Consensus 42 ~~p~gEsl~~~~~Rv~~~~~~-------ii-s~~~ra~~tvliVaHg~~irall~~ipi~~~~~LrE~~--~wEGlt~-- 109 (212)
+.|.+|......+++...+.+ ++ |++.|+.+|+.+++... -...+++..+++|+|++ .|||+++
T Consensus 28 D~pLTe~G~~QA~~~a~~l~~~~~~~~~IysSpl~Ra~qTA~~i~~~~----~~~~~~i~~~~~L~E~~fG~~eG~~~~e 103 (249)
T PRK14120 28 DVDLTEKGEAEAKRGGELLAEAGVLPDVVYTSLLRRAIRTANLALDAA----DRLWIPVRRSWRLNERHYGALQGKDKAE 103 (249)
T ss_pred CCCcCHHHHHHHHHHHHHHHhcCCCCCEEEecChHHHHHHHHHHHHhc----ccCCCCeEECCCcccccccccCCCCHHH
Confidence 557777776666666555432 23 56668888765543210 00125777788999999 9999998
Q ss_pred ---hhhHHHHHHHHhccCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCHHHHHHhHHHHHHHHhHhhhcCCCE
Q psy12135 110 ---NFARFQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKK 186 (212)
Q Consensus 110 ---~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~gES~~~v~~R~~~~~~~~i~~~~~~~~~ 186 (212)
++++..+..|.+++..+||++...-+|.+. .|+.|. ....+|+|||+.++.+|+.++|++++....+.+++
T Consensus 104 i~~~~~~~~~~~w~~~~~~~~p~~~~~~~~~~~--~d~~~~----~~~~~p~GES~~~~~~Rv~~~l~~~~~~~~~~~~~ 177 (249)
T PRK14120 104 TKAEYGEEQFMLWRRSYDTPPPPIEDGSEYSQD--NDPRYA----DLGVGPRTECLKDVVARFLPYWEDDIVPDLKAGKT 177 (249)
T ss_pred HHHHccHHHHHHHHhccccCCCccccccccccc--cCcccc----ccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCE
Confidence 455444677888766665544333332211 122332 11124899999999999999999854433346789
Q ss_pred EEEEeccHHHHHHHHHhhCCCCCCC
Q psy12135 187 VLVVTHGTSLRGLVKHIERKSLREP 211 (212)
Q Consensus 187 vliVsHG~~ir~ll~~l~g~~~~~~ 211 (212)
|||||||++||+++++++|++.+++
T Consensus 178 iliVsHggvir~l~~~~~~~~~~~~ 202 (249)
T PRK14120 178 VLIAAHGNSLRALVKHLDGISDEDI 202 (249)
T ss_pred EEEEeCHHHHHHHHHHHhCCCHHHh
Confidence 9999999999999999999887653
No 11
>PRK01295 phosphoglyceromutase; Provisional
Probab=99.76 E-value=6.9e-19 Score=145.93 Aligned_cols=136 Identities=29% Similarity=0.366 Sum_probs=95.8
Q ss_pred CCCCCccHHHHHHHHHHHHH-------Hh-hhhhhhcCceEEEEechHHHHHHHHhhhcCCCccccccc--cccCcch--
Q psy12135 42 QFPHTESLKETIMRVLPYWN-------EN-IATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWGLQSHV--FLLGINN-- 109 (212)
Q Consensus 42 ~~p~gEsl~~~~~Rv~~~~~-------~i-is~~~ra~~tvliVaHg~~irall~~ipi~~~~~LrE~~--~wEGlt~-- 109 (212)
+.|..+...+..+++...+. .+ .||+.|+.+|+.++++..- ...+++..+.+|+|++ +|+|+++
T Consensus 26 d~~Lt~~G~~qA~~~~~~L~~~~~~~d~i~sSpl~Ra~qTA~~i~~~~~----~~~~~~~~~~~L~E~~~G~~eg~~~~e 101 (206)
T PRK01295 26 DPDLTEQGVAEAKAAGRKLKAAGLKFDIAFTSALSRAQHTCQLILEELG----QPGLETIRDQALNERDYGDLSGLNKDD 101 (206)
T ss_pred CCCcCHHHHHHHHHHHHHHHhCCCCCCEEEeCCcHHHHHHHHHHHHHcC----CCCCCeEECCcccccccccccCCcHHH
Confidence 45677777666666655443 22 3677788888766653210 0025677789999999 9999998
Q ss_pred ---hhhHHHHHHHHhccCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCHHHHHHhHHHHHHHHhHhhhcCCCE
Q psy12135 110 ---NFARFQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKK 186 (212)
Q Consensus 110 ---~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~gES~~~v~~R~~~~~~~~i~~~~~~~~~ 186 (212)
++++.....|.+++.. .+|+|||+.+|.+|+..++.+.+......+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~-----------------------------~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~ 152 (206)
T PRK01295 102 ARAKWGEEQVHIWRRSYDV-----------------------------PPPGGESLKDTGARVLPYYLQEILPRVLRGER 152 (206)
T ss_pred HHHHchHHHHHHhhcccCC-----------------------------CCcCCCCHHHHHHHHHHHHHHHHHHhccCCCe
Confidence 4444445567653322 14799999999999999864434333235789
Q ss_pred EEEEeccHHHHHHHHHhhCCCCCC
Q psy12135 187 VLVVTHGTSLRGLVKHIERKSLRE 210 (212)
Q Consensus 187 vliVsHG~~ir~ll~~l~g~~~~~ 210 (212)
|||||||++||+++++++|++.+.
T Consensus 153 vliVtHg~~ir~l~~~~l~~~~~~ 176 (206)
T PRK01295 153 VLVAAHGNSLRALVMVLDGLTPEQ 176 (206)
T ss_pred EEEEcChHHHHHHHHHHhCCCHHH
Confidence 999999999999999999998754
No 12
>PRK01112 phosphoglyceromutase; Provisional
Probab=99.76 E-value=7.3e-19 Score=148.02 Aligned_cols=140 Identities=29% Similarity=0.406 Sum_probs=99.7
Q ss_pred CCCCCccHHHHHHHHHHHHHH-----h-hhhhhhcCceEEEEechHH---HHH-------------------HHHhhhcC
Q psy12135 42 QFPHTESLKETIMRVLPYWNE-----N-IATEIKQGKKVLVVTHGTS---LRG-------------------LILKVHVG 93 (212)
Q Consensus 42 ~~p~gEsl~~~~~Rv~~~~~~-----i-is~~~ra~~tvliVaHg~~---ira-------------------ll~~ipi~ 93 (212)
+.|.+|...+..+++..++.+ + .||+.|+.+|+.+++.... +-. .-..+|+.
T Consensus 25 D~~Lte~G~~Qa~~l~~~L~~~~~d~iysSpl~Ra~qTA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (228)
T PRK01112 25 DIPLSQQGIAEAIAAGEKIKDLPIDCIFTSTLVRSLMTALLAMTNHSSGKIPYIVHEEDDKKWMSRIYSDEEPEQMIPLF 104 (228)
T ss_pred CCCcCHHHHHHHHHHHHHhhcCCCCEEEEcCcHHHHHHHHHHHHhhcccccccccccccccccccccccccccccCCCee
Confidence 567777777777766655543 2 2677788888654431000 000 00125677
Q ss_pred CCccccccc--cccCcch-----hhhHHHHHHHHhccCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCHHHHH
Q psy12135 94 RPWGLQSHV--FLLGINN-----NFARFQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETI 166 (212)
Q Consensus 94 ~~~~LrE~~--~wEGlt~-----~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~gES~~~v~ 166 (212)
.+++|+|++ +|||+++ ++++...++|.+++... +|+|||+.++.
T Consensus 105 ~~~~L~E~~~G~~eG~~~~ei~~~~~~~~~~~w~~~~~~~-----------------------------~p~GES~~d~~ 155 (228)
T PRK01112 105 QSSALNERMYGELQGKNKAETAEKFGEEQVKLWRRSYKTA-----------------------------PPQGESLEDTG 155 (228)
T ss_pred ecCccccccccccCCCCHHHHHHHCcHHHHHHHhCcCCCC-----------------------------CCCCCCHHHHH
Confidence 789999999 9999999 45555667787654332 47999999999
Q ss_pred HhHHHHHHHHhHhhhcCCCEEEEEeccHHHHHHHHHhhCCCCCC
Q psy12135 167 MRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLRE 210 (212)
Q Consensus 167 ~R~~~~~~~~i~~~~~~~~~vliVsHG~~ir~ll~~l~g~~~~~ 210 (212)
+|+.++|++++......+++|||||||++||++++++++++.++
T Consensus 156 ~Rv~~~l~~~~~~~~~~~~~ilVVsHg~vir~l~~~ll~~~~~~ 199 (228)
T PRK01112 156 QRTLPYFQNRILPHLQQGKNVFVSAHGNSLRSLIMDLEKLSEEE 199 (228)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEeCHHHHHHHHHHHhCCCHHH
Confidence 99999999865533235789999999999999999999998754
No 13
>PRK13463 phosphatase PhoE; Provisional
Probab=99.74 E-value=2.9e-18 Score=141.69 Aligned_cols=131 Identities=12% Similarity=0.086 Sum_probs=94.6
Q ss_pred CCCCCccHHHHHHHHHHHHH-----Hhh-hhhhhcCceEEEEechHHHHHHHHhhhcCCCccccccc--cccCcch----
Q psy12135 42 QFPHTESLKETIMRVLPYWN-----ENI-ATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWGLQSHV--FLLGINN---- 109 (212)
Q Consensus 42 ~~p~gEsl~~~~~Rv~~~~~-----~ii-s~~~ra~~tvliVaHg~~irall~~ipi~~~~~LrE~~--~wEGlt~---- 109 (212)
+.|..+...+..+++...+. .++ ||+.|+.+|+.+++.. ..+|+..+.+|+|++ +|||++.
T Consensus 26 d~~Lt~~G~~Qa~~~~~~l~~~~~~~i~sSpl~Ra~qTA~~i~~~-------~~~~~~~~~~l~E~~~G~~eG~~~~e~~ 98 (203)
T PRK13463 26 NSALTENGILQAKQLGERMKDLSIHAIYSSPSERTLHTAELIKGE-------RDIPIIADEHFYEINMGIWEGQTIDDIE 98 (203)
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCCCEEEECCcHHHHHHHHHHHhc-------CCCCceECcCceeCCCCccCCCcHHHHh
Confidence 46677776666666655443 222 6777888886655432 146888889999999 9999998
Q ss_pred -hhhHHHHHHHHhccCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCHHHHHHhHHHHHHHHhHhhhcCCCEEE
Q psy12135 110 -NFARFQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVL 188 (212)
Q Consensus 110 -~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~gES~~~v~~R~~~~~~~~i~~~~~~~~~vl 188 (212)
.+++. ++.|..+.. .| .+|+|||+.++.+|+..+|+++.. .+.+++||
T Consensus 99 ~~~p~~-~~~~~~~~~--------------------~~--------~~~~gEs~~~~~~R~~~~l~~i~~--~~~~~~vl 147 (203)
T PRK13463 99 RQYPDD-IQLFWNEPH--------------------LF--------QSTSGENFEAVHKRVIEGMQLLLE--KHKGESIL 147 (203)
T ss_pred hhCHHH-HHHHHhChh--------------------cc--------CCCCCeEHHHHHHHHHHHHHHHHH--hCCCCEEE
Confidence 45543 344433211 11 247999999999999999998543 24678999
Q ss_pred EEeccHHHHHHHHHhhCCCCCC
Q psy12135 189 VVTHGTSLRGLVKHIERKSLRE 210 (212)
Q Consensus 189 iVsHG~~ir~ll~~l~g~~~~~ 210 (212)
|||||++||+++++++|++.+.
T Consensus 148 vVsHg~~ir~~~~~~~~~~~~~ 169 (203)
T PRK13463 148 IVSHAAAAKLLVGHFAGIEIEN 169 (203)
T ss_pred EEeChHHHHHHHHHHhCCCHHH
Confidence 9999999999999999988653
No 14
>KOG0235|consensus
Probab=99.73 E-value=3.9e-18 Score=141.43 Aligned_cols=146 Identities=33% Similarity=0.400 Sum_probs=102.9
Q ss_pred CcccCCCCCCCCCCCCccHHHHHHHHHHHHH------Hhh--hhhhhcCceEEEEechHHHHHHHHhhhcCCCccccccc
Q psy12135 31 PNFKIDGPNEDQFPHTESLKETIMRVLPYWN------ENI--ATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWGLQSHV 102 (212)
Q Consensus 31 ~~~~~~~~~~~~~p~gEsl~~~~~Rv~~~~~------~ii--s~~~ra~~tvliVaHg~~irall~~ipi~~~~~LrE~~ 102 (212)
.+|+|. .+.|..|...+.++++..++. +++ |+++|+.+|+.++.+..- ...+|+..+|+|+|++
T Consensus 22 ~~~~G~----~D~~Lte~G~~qA~~~~~~l~~~~~~~~~~~tS~l~RakqT~~~il~~~~----~~~~pv~~~~~L~ER~ 93 (214)
T KOG0235|consen 22 NIFQGW----IDAPLTEKGEEQAKAAAQRLKDLNIEFDVCYTSDLKRAKQTAELILEELK----QKKVPVLYTWRLNERH 93 (214)
T ss_pred Cccccc----ccCccChhhHHHHHHHHHHHHhcCCcccEEecCHHHHHHHHHHHHHHhhc----cCCcceEechhhchhh
Confidence 477762 233444444444444333322 223 677788888766665321 1238999999999999
Q ss_pred --cccCcch-----hhhHHHH-HHHHhccCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCHHHHHHhHHHHHH
Q psy12135 103 --FLLGINN-----NFARFQV-QIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 174 (212)
Q Consensus 103 --~wEGlt~-----~~~~~~~-~~~~~~~~~~pP~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~gES~~~v~~R~~~~~~ 174 (212)
+++|+++ .++++++ ..|+.. +......|.|||+.++.+|+.+||+
T Consensus 94 yG~l~Gl~~~e~~~~~g~~~~~~~~r~~---------------------------~~~~~~~p~~EsL~~~~~R~~~~~~ 146 (214)
T KOG0235|consen 94 YGDLQGLNKRETAKRYGEEQVYEDPRLS---------------------------DLDEIPLPDGESLKDCLDRLLPFWN 146 (214)
T ss_pred hccccCccHHHHHHHcchhccccchhhc---------------------------cCCcCCCCCCccHHHHHHHHHHHHH
Confidence 9999999 4444332 233321 1112335899999999999999999
Q ss_pred HHhHhhhcCCCEEEEEeccHHHHHHHHHhhCCCCCCC
Q psy12135 175 ENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLREP 211 (212)
Q Consensus 175 ~~i~~~~~~~~~vliVsHG~~ir~ll~~l~g~~~~~~ 211 (212)
+.+.+....|++||||+||+++|+++.++.|++.+++
T Consensus 147 e~i~~~~~~gk~Vli~aHGnsLR~i~~~l~g~s~~~i 183 (214)
T KOG0235|consen 147 EEIAKESKEGKNVLIVAHGNSLRAIVKHLEGISDEAI 183 (214)
T ss_pred HhhhhhhcCCcEEEEEcCcHHHHHHHHHHhcCCHhhh
Confidence 9999888889999999999999999999999987764
No 15
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=99.71 E-value=9.2e-18 Score=138.01 Aligned_cols=132 Identities=13% Similarity=0.033 Sum_probs=95.6
Q ss_pred CCCCCCccHHHHHHHHHHHHH-----Hhh-hhhhhcCceEEEEechHHHHHHHHhhhcCCCccccccc--cccCcch---
Q psy12135 41 DQFPHTESLKETIMRVLPYWN-----ENI-ATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWGLQSHV--FLLGINN--- 109 (212)
Q Consensus 41 ~~~p~gEsl~~~~~Rv~~~~~-----~ii-s~~~ra~~tvliVaHg~~irall~~ipi~~~~~LrE~~--~wEGlt~--- 109 (212)
.+.|..+...+..+++...+. .++ ||+.|+.+|+.+++... .+++..+++|+|++ .|||++.
T Consensus 23 ~d~pLt~~G~~Qa~~~~~~l~~~~~~~i~sSpl~Ra~qTA~~i~~~~-------~~~~~~~~~L~E~~~G~~eg~~~~~~ 95 (199)
T PRK15004 23 APTPLTARGIEQAQNLHTLLRDVPFDLVLCSELERAQHTARLVLSDR-------QLPVHIIPELNEMFFGDWEMRHHRDL 95 (199)
T ss_pred CCCCcCHHHHHHHHHHHHHHhCCCCCEEEECchHHHHHHHHHHHhcC-------CCCceeChhheeCCCcccCCCCHHHH
Confidence 355777777666666655543 222 67778888876664321 46777889999999 9999998
Q ss_pred --hhhHHHHHHHHhccCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCHHHHHHhHHHHHHHHhHhhhcCCCEE
Q psy12135 110 --NFARFQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKV 187 (212)
Q Consensus 110 --~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~gES~~~v~~R~~~~~~~~i~~~~~~~~~v 187 (212)
+++ +.+..|..++.. ..+|+|||+.++.+|+..+++++.. . ..+++|
T Consensus 96 ~~~~~-~~~~~~~~~~~~----------------------------~~~~~gEs~~~~~~Rv~~~l~~l~~-~-~~~~~i 144 (199)
T PRK15004 96 MQEDA-ENYAAWCNDWQH----------------------------AIPTNGEGFQAFSQRVERFIARLSA-F-QHYQNL 144 (199)
T ss_pred HHHCH-HHHHHHHhChhh----------------------------cCCCCCcCHHHHHHHHHHHHHHHHH-h-CCCCeE
Confidence 333 334555543211 1136999999999999999999643 2 457899
Q ss_pred EEEeccHHHHHHHHHhhCCCCCC
Q psy12135 188 LVVTHGTSLRGLVKHIERKSLRE 210 (212)
Q Consensus 188 liVsHG~~ir~ll~~l~g~~~~~ 210 (212)
||||||++|++++++++|++.+.
T Consensus 145 liVsHg~~i~~l~~~~~~~~~~~ 167 (199)
T PRK15004 145 LIVSHQGVLSLLIARLLGMPAEA 167 (199)
T ss_pred EEEcChHHHHHHHHHHhCCCHHH
Confidence 99999999999999999987643
No 16
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=99.70 E-value=1.7e-17 Score=136.79 Aligned_cols=133 Identities=14% Similarity=0.067 Sum_probs=94.1
Q ss_pred CCCCccHHHHHHHHHHHHH-----Hhh-hhhhhcCceEEEEechHHHHHHHHhhhcCCCccccccc--cccCcch-hhhH
Q psy12135 43 FPHTESLKETIMRVLPYWN-----ENI-ATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWGLQSHV--FLLGINN-NFAR 113 (212)
Q Consensus 43 ~p~gEsl~~~~~Rv~~~~~-----~ii-s~~~ra~~tvliVaHg~~irall~~ipi~~~~~LrE~~--~wEGlt~-~~~~ 113 (212)
.|..+...+..+++...+. .++ ||+.|+.+|+.+++... ++++..+.+|+|++ +|||+++ +...
T Consensus 25 ~~Lt~~G~~qa~~l~~~l~~~~~~~i~sSpl~Ra~qTA~~i~~~~-------~~~~~~~~~L~E~~~G~~eG~~~~e~~~ 97 (204)
T TIGR03848 25 VDLDERGREQAAALAERLADLPIAAIVSSPLERCRETAEPIAEAR-------GLPPRVDERLGECDYGDWTGRELKELAK 97 (204)
T ss_pred CCcCHHHHHHHHHHHHHHhcCCCCEEEeCcHHHHHHHHHHHHHhc-------CCCceECcccccCCCCeeCCcCHHHHhC
Confidence 5777777777776665543 223 67778888866554321 46788899999999 9999998 3221
Q ss_pred -HHHHHHHhccCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCHHHHHHhHHHHHHHHhHh---hhcCCCEEEE
Q psy12135 114 -FQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIAT---EIKQGKKVLV 189 (212)
Q Consensus 114 -~~~~~~~~~~~~~pP~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~gES~~~v~~R~~~~~~~~i~~---~~~~~~~vli 189 (212)
..+..|..+ | .. ..+|+|||+.++.+|+.++++++... ..+.+++|||
T Consensus 98 ~~~~~~~~~~----~----------------~~--------~~~p~gEs~~~~~~R~~~~l~~~~~~~~~~~~~~~~vli 149 (204)
T TIGR03848 98 EPLWPVVQAH----P----------------SA--------AVFPGGESLAQVQARAVAAVREHDARLAAEHGPDAVWVA 149 (204)
T ss_pred cHHHHHHhcC----c----------------cc--------CCCCCCCCHHHHHHHHHHHHHHHHHHhhhccCCCCEEEE
Confidence 223444332 1 01 12579999999999999999986432 0125679999
Q ss_pred EeccHHHHHHHHHhhCCCCCC
Q psy12135 190 VTHGTSLRGLVKHIERKSLRE 210 (212)
Q Consensus 190 VsHG~~ir~ll~~l~g~~~~~ 210 (212)
||||++|++++++++|++.+.
T Consensus 150 VsHg~~ir~ll~~~lg~~~~~ 170 (204)
T TIGR03848 150 CSHGDVIKSVLADALGMHLDL 170 (204)
T ss_pred EeCChHHHHHHHHHhCCCHHH
Confidence 999999999999999988753
No 17
>PRK03482 phosphoglycerate mutase; Provisional
Probab=99.69 E-value=3.9e-17 Score=135.70 Aligned_cols=135 Identities=19% Similarity=0.179 Sum_probs=95.3
Q ss_pred CCCCCccHHHHHHHHHHHHHH-----hh-hhhhhcCceEEEEechHHHHHHHHhhhcCCCccccccc--cccCcch-hhh
Q psy12135 42 QFPHTESLKETIMRVLPYWNE-----NI-ATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWGLQSHV--FLLGINN-NFA 112 (212)
Q Consensus 42 ~~p~gEsl~~~~~Rv~~~~~~-----ii-s~~~ra~~tvliVaHg~~irall~~ipi~~~~~LrE~~--~wEGlt~-~~~ 112 (212)
+.|..+...+..+.+...+.+ ++ ||+.|+.+|+.+++.. .++++..+++|+|++ .|||+++ +..
T Consensus 25 d~~Lt~~G~~qA~~~~~~l~~~~~~~I~sSpl~Ra~qTA~~i~~~-------~~~~~~~~~~L~E~~~G~~eg~~~~~~~ 97 (215)
T PRK03482 25 DSPLTAKGEQQAMQVAERAKELGITHIISSDLGRTRRTAEIIAQA-------CGCDIIFDPRLRELNMGVLEKRHIDSLT 97 (215)
T ss_pred CCCcCHHHHHHHHHHHHHHhcCCCCEEEECCcHHHHHHHHHHHHh-------cCCCeeEChhccccCCccccCCcHHHHH
Confidence 456777766666666555542 22 6777888886655422 146777889999999 9999998 433
Q ss_pred HHHHHHHHhccCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCHHHHHHhHHHHHHHHhHhhhcCCCEEEEEec
Q psy12135 113 RFQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTH 192 (212)
Q Consensus 113 ~~~~~~~~~~~~~~pP~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~gES~~~v~~R~~~~~~~~i~~~~~~~~~vliVsH 192 (212)
.. ...|+..+...+ +. ..+|+|||+.++.+|+..+|++++. ..++++||||||
T Consensus 98 ~~-~~~~~~~~~~~~----------------~~--------~~~p~gEs~~~~~~Rv~~~l~~~~~--~~~~~~vliVsH 150 (215)
T PRK03482 98 EE-EEGWRRQLVNGT----------------VD--------GRIPEGESMQELSDRMHAALESCLE--LPQGSRPLLVSH 150 (215)
T ss_pred hh-HHHHHHhhhcCC----------------Cc--------cCCCCCccHHHHHHHHHHHHHHHHH--hCCCCeEEEEeC
Confidence 22 245655321111 11 2258999999999999999999643 246789999999
Q ss_pred cHHHHHHHHHhhCCCCCC
Q psy12135 193 GTSLRGLVKHIERKSLRE 210 (212)
Q Consensus 193 G~~ir~ll~~l~g~~~~~ 210 (212)
|++|++++++++|++.+.
T Consensus 151 g~~i~~l~~~l~~~~~~~ 168 (215)
T PRK03482 151 GIALGCLVSTILGLPAWA 168 (215)
T ss_pred cHHHHHHHHHHhCCChhh
Confidence 999999999999988653
No 18
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=99.66 E-value=1.9e-16 Score=127.24 Aligned_cols=132 Identities=17% Similarity=0.227 Sum_probs=93.6
Q ss_pred CCCCCCccHHHHHHHHHHHHH-----Hhh-hhhhhcCceEEEEechHHHHHHHHhhhcCCCccccccc--cccCcch-hh
Q psy12135 41 DQFPHTESLKETIMRVLPYWN-----ENI-ATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWGLQSHV--FLLGINN-NF 111 (212)
Q Consensus 41 ~~~p~gEsl~~~~~Rv~~~~~-----~ii-s~~~ra~~tvliVaHg~~irall~~ipi~~~~~LrE~~--~wEGlt~-~~ 111 (212)
.+.|..+...+..+++...+. .++ ||+.|+.+|+.+++... ++++..+.+|+|++ .|+|++. +.
T Consensus 20 ~d~~Lt~~G~~qa~~l~~~l~~~~~~~i~sSpl~Ra~qTA~~i~~~~-------~~~~~~~~~L~E~~~G~~~g~~~~~~ 92 (177)
T TIGR03162 20 TDVPLAEKGAEQAAALREKLADVPFDAVYSSPLSRCRELAEILAERR-------GLPIIKDPRLREMDFGDWEGRSWDEI 92 (177)
T ss_pred CCCCcChhHHHHHHHHHHHhcCCCCCEEEECchHHHHHHHHHHHhhc-------CCCceECCccccccCCccCCCCHHHH
Confidence 356677777666666655442 222 67778888866554321 46777889999998 9999998 22
Q ss_pred hHH--HHHHHHhccCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCHHHHHHhHHHHHHHHhHhhhcCCCEEEE
Q psy12135 112 ARF--QVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLV 189 (212)
Q Consensus 112 ~~~--~~~~~~~~~~~~pP~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~gES~~~v~~R~~~~~~~~i~~~~~~~~~vli 189 (212)
.+. .+..|..+.. .+ .+|+|||+.++.+|+..+++++.. . ..+++|||
T Consensus 93 ~~~~~~~~~~~~~~~--------------------~~--------~~~~gEs~~~~~~R~~~~~~~l~~-~-~~~~~vlv 142 (177)
T TIGR03162 93 PEAYPELDAWAADWQ--------------------HA--------RPPGGESFADFYQRVSEFLEELLK-A-HEGDNVLI 142 (177)
T ss_pred HHhCHHHHHHHhCcc--------------------cC--------CCcCCCCHHHHHHHHHHHHHHHHH-h-CCCCeEEE
Confidence 211 2344544211 11 247999999999999999999654 2 35789999
Q ss_pred EeccHHHHHHHHHhhCCCCC
Q psy12135 190 VTHGTSLRGLVKHIERKSLR 209 (212)
Q Consensus 190 VsHG~~ir~ll~~l~g~~~~ 209 (212)
||||++|++++++++|++.+
T Consensus 143 VsHg~~i~~l~~~~~~~~~~ 162 (177)
T TIGR03162 143 VTHGGVIRALLAHLLGLPLE 162 (177)
T ss_pred EECHHHHHHHHHHHhCCCHH
Confidence 99999999999999998764
No 19
>PRK13462 acid phosphatase; Provisional
Probab=99.65 E-value=2.4e-16 Score=130.49 Aligned_cols=123 Identities=15% Similarity=0.122 Sum_probs=84.3
Q ss_pred CCCCCccHHHHHHHHHHHHHH-------hh-hhhhhcCceEEEEechHHHHHHHHhhhc-CCCccccccc--cccCcch-
Q psy12135 42 QFPHTESLKETIMRVLPYWNE-------NI-ATEIKQGKKVLVVTHGTSLRGLILKVHV-GRPWGLQSHV--FLLGINN- 109 (212)
Q Consensus 42 ~~p~gEsl~~~~~Rv~~~~~~-------ii-s~~~ra~~tvliVaHg~~irall~~ipi-~~~~~LrE~~--~wEGlt~- 109 (212)
+.|..+...+..+++...+.+ ++ ||+.|+.+|+.++ .++. ..+.+|+|++ .|||+++
T Consensus 29 d~pLt~~G~~QA~~l~~~l~~~~~~~~~i~sSpl~Ra~qTA~~i-----------~~~~~~~~~~LrE~~~G~~eG~~~~ 97 (203)
T PRK13462 29 ELELTETGRTQAELAGQALGELELDDPLVISSPRRRALDTAKLA-----------GLTVDEVSGLLAEWDYGSYEGLTTP 97 (203)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCEEEECchHHHHHHHHHh-----------cCcccccCccccccCCccccCCcHH
Confidence 456666666655555444321 22 5666777775433 1232 4678999999 9999998
Q ss_pred hhhHHH--HHHHHhccCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCHHHHHHhHHHHHHHHhHhhhcCCCEE
Q psy12135 110 NFARFQ--VQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKV 187 (212)
Q Consensus 110 ~~~~~~--~~~~~~~~~~~pP~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~gES~~~v~~R~~~~~~~~i~~~~~~~~~v 187 (212)
+..... +..|.. ..|+|||+.++.+|+..++++++. .+.+++|
T Consensus 98 ei~~~~~~~~~~~~---------------------------------~~p~gES~~~~~~Rv~~~l~~i~~--~~~~~~v 142 (203)
T PRK13462 98 QIRESEPDWLVWTH---------------------------------GCPGGESVAQVNERADRAVALALE--HMESRDV 142 (203)
T ss_pred HHHHhCchHHhhcC---------------------------------CCCCCccHHHHHHHHHHHHHHHHH--hCCCCCE
Confidence 221110 111211 136999999999999999999543 2467899
Q ss_pred EEEeccHHHHHHHHHhhCCCCCC
Q psy12135 188 LVVTHGTSLRGLVKHIERKSLRE 210 (212)
Q Consensus 188 liVsHG~~ir~ll~~l~g~~~~~ 210 (212)
||||||++||+++++++|++.+.
T Consensus 143 liVsHg~vir~ll~~~l~~~~~~ 165 (203)
T PRK13462 143 VFVSHGHFSRAVITRWVELPLAE 165 (203)
T ss_pred EEEeCCHHHHHHHHHHhCCCHHH
Confidence 99999999999999999988653
No 20
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=99.61 E-value=1.2e-15 Score=125.88 Aligned_cols=131 Identities=18% Similarity=0.122 Sum_probs=89.6
Q ss_pred CCCCCccHHHHHHHHHHHHH-------Hh-hhhhhhcCceEEEEechHHHHHHHHhhhcCCCccccccc--cccCcch--
Q psy12135 42 QFPHTESLKETIMRVLPYWN-------EN-IATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWGLQSHV--FLLGINN-- 109 (212)
Q Consensus 42 ~~p~gEsl~~~~~Rv~~~~~-------~i-is~~~ra~~tvliVaHg~~irall~~ipi~~~~~LrE~~--~wEGlt~-- 109 (212)
+.|..+...+..+.+...+. .+ .|++.|+.+|+.+++... .+++..+.+|+|++ +|||++.
T Consensus 26 d~pLt~~G~~QA~~l~~~l~~~~~~~~~i~sS~l~Ra~~TA~~~a~~~-------~~~~~~~~~l~E~~~G~~eg~~~~e 98 (208)
T COG0406 26 DSPLTEEGRAQAEALAERLAARDIGFDAIYSSPLKRAQQTAEPLAEEL-------GLPLEVDDRLREIDFGDWEGLTIDE 98 (208)
T ss_pred CCCCCHHHHHHHHHHHHHHhhcCCCCCEEEECchHHHHHHHHHHHHhc-------CCCceecCCeeEeecccccCCcHHH
Confidence 34555555555555544443 22 256668887765554321 35567789999999 9999998
Q ss_pred --hhhHHHHHHHHhccCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCHHHHHHhHHHHHHHHhHhhhcCCCEE
Q psy12135 110 --NFARFQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKV 187 (212)
Q Consensus 110 --~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~gES~~~v~~R~~~~~~~~i~~~~~~~~~v 187 (212)
+.....+..|...+. .| ..|+|||+.++.+|+..+++++.. . ..+++|
T Consensus 99 ~~~~~p~~~~~~~~~~~--------------------~~--------~~~~gEs~~~~~~R~~~~~~~~~~-~-~~~~~v 148 (208)
T COG0406 99 LAEEPPEELAAWLADPY--------------------LA--------PPPGGESLADVSKRVVAALAELLR-S-PPGNNV 148 (208)
T ss_pred HHHhCHHHHHHHhcCcc--------------------cc--------CCCCCCCHHHHHHHHHHHHHHHHH-h-cCCCeE
Confidence 222234455544211 11 246799999999999999999654 2 345589
Q ss_pred EEEeccHHHHHHHHHhhCCCCC
Q psy12135 188 LVVTHGTSLRGLVKHIERKSLR 209 (212)
Q Consensus 188 liVsHG~~ir~ll~~l~g~~~~ 209 (212)
||||||++||+|+++++|++..
T Consensus 149 lvVsHg~~ir~l~~~~~~~~~~ 170 (208)
T COG0406 149 LVVSHGGVIRALLAYLLGLDLE 170 (208)
T ss_pred EEEEChHHHHHHHHHhcCCChh
Confidence 9999999999999999998753
No 21
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.58 E-value=2.3e-15 Score=134.89 Aligned_cols=129 Identities=19% Similarity=0.127 Sum_probs=93.5
Q ss_pred CCCCCccHHHHHHHHHHHHHHh------h-hhhhhcCceEEEEechHHHHHHHHhhhcCCCccccccc--cccCcch---
Q psy12135 42 QFPHTESLKETIMRVLPYWNEN------I-ATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWGLQSHV--FLLGINN--- 109 (212)
Q Consensus 42 ~~p~gEsl~~~~~Rv~~~~~~i------i-s~~~ra~~tvliVaHg~~irall~~ipi~~~~~LrE~~--~wEGlt~--- 109 (212)
+.|..+...+..+.+...+... + ||+.|+.+|+.+++... .+++..+.+|+|++ +|+|+++
T Consensus 195 D~~Lt~~G~~QA~~l~~~l~~~~~~d~i~sSpl~Ra~qTA~~i~~~~-------~~~~~~~~~L~E~~~G~~eg~~~~ei 267 (372)
T PRK07238 195 NPELTEVGRRQAAAAARYLAARGGIDAVVSSPLQRARDTAAAAAKAL-------GLDVTVDDDLIETDFGAWEGLTFAEA 267 (372)
T ss_pred CCCcCHHHHHHHHHHHHHHhccCCCCEEEECChHHHHHHHHHHHHhc-------CCCcEECccceeCCCCccCCCCHHHH
Confidence 4567777766666665555432 2 66678877765443221 35777789999999 9999998
Q ss_pred --hhhHHHHHHHHhccCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCHHHHHHhHHHHHHHHhHhhhcCCCEE
Q psy12135 110 --NFARFQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKV 187 (212)
Q Consensus 110 --~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~gES~~~v~~R~~~~~~~~i~~~~~~~~~v 187 (212)
+++ +.+..|..+... .+|+|||+.++.+|+..++++++. . ..+++|
T Consensus 268 ~~~~p-~~~~~w~~~~~~-----------------------------~~p~gEs~~~~~~Rv~~~l~~l~~-~-~~~~~v 315 (372)
T PRK07238 268 AERDP-ELHRAWLADTSV-----------------------------APPGGESFDAVARRVRRARDRLIA-E-YPGATV 315 (372)
T ss_pred HHHCH-HHHHHHHhCCCC-----------------------------CCcCCCCHHHHHHHHHHHHHHHHH-H-CCCCeE
Confidence 344 334556553221 147999999999999999999543 2 467899
Q ss_pred EEEeccHHHHHHHHHhhCCCCC
Q psy12135 188 LVVTHGTSLRGLVKHIERKSLR 209 (212)
Q Consensus 188 liVsHG~~ir~ll~~l~g~~~~ 209 (212)
||||||++|++++++++|++.+
T Consensus 316 lvVtHg~~ir~ll~~~l~~~~~ 337 (372)
T PRK07238 316 LVVSHVTPIKTLLRLALDAGPG 337 (372)
T ss_pred EEEEChHHHHHHHHHHhCCCHH
Confidence 9999999999999999998764
No 22
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.53 E-value=1.1e-14 Score=139.47 Aligned_cols=131 Identities=16% Similarity=0.092 Sum_probs=91.4
Q ss_pred CCCCccHHHHHHHHHHHHHH--------h-hhhhhhcCceEEEEechHH----------HHHHHHhhhcCCCccccccc-
Q psy12135 43 FPHTESLKETIMRVLPYWNE--------N-IATEIKQGKKVLVVTHGTS----------LRGLILKVHVGRPWGLQSHV- 102 (212)
Q Consensus 43 ~p~gEsl~~~~~Rv~~~~~~--------i-is~~~ra~~tvliVaHg~~----------irall~~ipi~~~~~LrE~~- 102 (212)
.|..|...+..+++..+++. + .|+++|+.+|+.++++... +.+...++|+..+.+|+|++
T Consensus 442 ~pLt~~G~~qA~~l~~~l~~~~~~~~~~V~sSpl~Ra~~TA~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~L~Ei~f 521 (664)
T PTZ00322 442 SRLTERGRAYSRALFEYFQKEISTTSFTVMSSCAKRCTETVHYFAEESILQQSTASAASSQSPSLNCRVLYFPTLDDINH 521 (664)
T ss_pred CccCHHHHHHHHHHHHHHHhccCCCCcEEEcCCcHHHHHHHHHHHhccccccccccccccccccccccccchhhhCcCCC
Confidence 46777776666666555543 2 2677788888766654310 00000135777889999999
Q ss_pred -cccCcch-----hhhHHHHHHHHhccCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCHHHHH-HhHHHHHHH
Q psy12135 103 -FLLGINN-----NFARFQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETI-MRVLPYWNE 175 (212)
Q Consensus 103 -~wEGlt~-----~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~gES~~~v~-~R~~~~~~~ 175 (212)
+|||+++ ++++ .+..|..+.. .| .+|+|||+.++. .|+.+++++
T Consensus 522 G~wEG~t~~ei~~~~p~-~~~~~~~d~~--------------------~~--------~~P~GES~~d~~~~R~~~~i~~ 572 (664)
T PTZ00322 522 GDCEGQLLSDVRRTMPN-TLQSMKADPY--------------------YT--------AWPNGECIHQVFNARLEPHIHD 572 (664)
T ss_pred cccCCCCHHHHHHhCcH-HHHHHHhCCC--------------------cC--------CCCCCcCHHHHHHHHHHHHHHH
Confidence 9999999 4443 3455654311 12 258999999976 799999999
Q ss_pred HhHhhhcCCCEEEEEeccHHHHHHHHHhhCC
Q psy12135 176 NIATEIKQGKKVLVVTHGTSLRGLVKHIERK 206 (212)
Q Consensus 176 ~i~~~~~~~~~vliVsHG~~ir~ll~~l~g~ 206 (212)
+ . ...++|||||||++||+++++++|.
T Consensus 573 l-~---~~~~~ilvVsHg~vir~ll~~~~~~ 599 (664)
T PTZ00322 573 I-Q---ASTTPVLVVSHLHLLQGLYSYFVTD 599 (664)
T ss_pred H-H---ccCCCEEEEeCcHHHHHHHHHHhcC
Confidence 5 3 2347899999999999999999996
No 23
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=99.47 E-value=5e-14 Score=110.89 Aligned_cols=122 Identities=19% Similarity=0.127 Sum_probs=79.8
Q ss_pred CCCCCCccHHHHHHHHHHHHHHh---------hhhhhhcCceEEEEechHHHHHHHHhhhcCCCccccccc--cccCcch
Q psy12135 41 DQFPHTESLKETIMRVLPYWNEN---------IATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWGLQSHV--FLLGINN 109 (212)
Q Consensus 41 ~~~p~gEsl~~~~~Rv~~~~~~i---------is~~~ra~~tvliVaHg~~irall~~ipi~~~~~LrE~~--~wEGlt~ 109 (212)
.+.|..+...+..+++..++... .||+.|+.+|+.+++... ..++ ..++|+|++ .|+|+++
T Consensus 22 ~d~~Lt~~G~~qa~~~a~~l~~~~~~~~~~i~sSpl~Ra~qTa~~i~~~~-------~~~~-~~~~L~E~~~G~~~g~~~ 93 (155)
T smart00855 22 TDSPLTELGRAQAEALGELLASLGRLRFDVIYSSPLLRARETAEALAIAL-------GLGE-VDPRLRERDYGAWEGLTK 93 (155)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhccCCCCCEEEeCchHHHHHHHHHHHHhc-------CCCC-CChhhhhcccceecCCcH
Confidence 46778888877777776666431 256667766644332110 2332 578999999 9999998
Q ss_pred -hhhHHHHHHHHhccCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCHHHHHHhHHHHHHHHhHhhhcCCCEEE
Q psy12135 110 -NFARFQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVL 188 (212)
Q Consensus 110 -~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~gES~~~v~~R~~~~~~~~i~~~~~~~~~vl 188 (212)
+........|...+. ..+|+|||+.++..|+..+++++.......+++||
T Consensus 94 ~~~~~~~~~~~~~~~~-----------------------------~~~~~gEs~~~~~~Rv~~~~~~i~~~~~~~~~~vl 144 (155)
T smart00855 94 EEERAKAWTRPADWLG-----------------------------AAPPGGESLADVVERLVRALEELIATHDKSGQNVL 144 (155)
T ss_pred HHHHHHHHHHHhccCC-----------------------------CCCcCCCCHHHHHHHHHHHHHHHHHhcccCCCeEE
Confidence 322222222322111 12479999999999999999996432112567999
Q ss_pred EEeccHHHHHH
Q psy12135 189 VVTHGTSLRGL 199 (212)
Q Consensus 189 iVsHG~~ir~l 199 (212)
|||||++|+++
T Consensus 145 vVtHg~~ir~~ 155 (155)
T smart00855 145 IVSHGGVIRAL 155 (155)
T ss_pred EEECCcccccC
Confidence 99999999874
No 24
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=99.40 E-value=2e-13 Score=106.40 Aligned_cols=120 Identities=23% Similarity=0.238 Sum_probs=79.4
Q ss_pred CCCCccHHHHHHHHHHHHHHh--------hhhhhhcCceEEEEechHHHHHHHHhhhcCCCccccccc--cccCcch---
Q psy12135 43 FPHTESLKETIMRVLPYWNEN--------IATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWGLQSHV--FLLGINN--- 109 (212)
Q Consensus 43 ~p~gEsl~~~~~Rv~~~~~~i--------is~~~ra~~tvliVaHg~~irall~~ipi~~~~~LrE~~--~wEGlt~--- 109 (212)
.|.++...+..+.+...+... .||..|+.+|+.+++.+. ++++..+..|+|++ .|+|.+.
T Consensus 24 ~~Lt~~G~~qA~~~~~~l~~~~~~~~~i~~Sp~~R~~qTA~~~~~~~-------~~~~~~~~~l~E~~~g~~~g~~~~~~ 96 (158)
T PF00300_consen 24 PPLTERGREQARQLGEYLAERDIQIDVIYSSPLRRCIQTAEIIAEGL-------GIEIIVDPRLREIDFGDWEGRPFDEI 96 (158)
T ss_dssp TGBEHHHHHHHHHHHHHHHHTTSSCSEEEEESSHHHHHHHHHHHHHH-------TSEEEEEGGGSCCGCGGGTTSBHHHH
T ss_pred ccccHHHHHHHHhhcccccccccCceEEecCCcchhhhhhchhhccc-------ccccccccccccccchhhcccchhhH
Confidence 367777777777665555411 144445555543333321 35677789999999 7999999
Q ss_pred --hhhHHHHHHHHhccCCCCCCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCHHHHHHhHHHHHHHHhHhhhcCCCEE
Q psy12135 110 --NFARFQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKV 187 (212)
Q Consensus 110 --~~~~~~~~~~~~~~~~~pP~~~~~~~~~~~~~~~~~y~~~~~~~~~~p~gES~~~v~~R~~~~~~~~i~~~~~~~~~v 187 (212)
.++.....++...+.. .+|+|||+.++..|+..+++.+.. ....+++|
T Consensus 97 ~~~~~~~~~~~~~~~~~~-----------------------------~~~~~Es~~~~~~R~~~~~~~l~~-~~~~~~~v 146 (158)
T PF00300_consen 97 EEKFPDEFEAWWSDPYFY-----------------------------RPPGGESWEDFQQRVKQFLDELIA-YKRPGENV 146 (158)
T ss_dssp HHHHHHHHHHHHHHTSSC-----------------------------GSTTSHHHHHHHHHHHHHHHHHHH-HHHTTSEE
T ss_pred Hhhhhcccchhhcccccc-----------------------------ccccCCCHHHHHHHHHHHHHHHHH-HhCCCCEE
Confidence 3332333333332221 146999999999999999999653 23578999
Q ss_pred EEEeccHHHHHH
Q psy12135 188 LVVTHGTSLRGL 199 (212)
Q Consensus 188 liVsHG~~ir~l 199 (212)
||||||++|++|
T Consensus 147 liVsHg~~i~~~ 158 (158)
T PF00300_consen 147 LIVSHGGFIRAL 158 (158)
T ss_dssp EEEE-HHHHHHH
T ss_pred EEEecHHHHHhC
Confidence 999999999986
No 25
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=98.94 E-value=1.4e-09 Score=95.13 Aligned_cols=52 Identities=17% Similarity=0.230 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHhHHHHHHHHhHhhhc-CCCEEEEEeccHHHHHHHHHhhCCCCC
Q psy12135 157 PHTESLKETIMRVLPYWNENIATEIK-QGKKVLVVTHGTSLRGLVKHIERKSLR 209 (212)
Q Consensus 157 p~gES~~~v~~R~~~~~~~~i~~~~~-~~~~vliVsHG~~ir~ll~~l~g~~~~ 209 (212)
+++|+ .++.+|+..++++++..... .++++||||||++||++++.++|++++
T Consensus 205 ~gee~-~~~~~Rv~~al~~i~~r~~~~~~~~vLVVsHGgvIR~ll~~lLglp~~ 257 (299)
T PTZ00122 205 TIEEI-LEDMKRIEAAFEKYFHRPVEDEDSVEIIVCHGNVIRYLVCRALQLPPE 257 (299)
T ss_pred CcchH-HHHHHHHHHHHHHHHHhcccCCCCeEEEEeCChHHHHHHHHHhCcCHH
Confidence 45555 67799999999996532111 235789999999999999999998854
No 26
>PTZ00123 phosphoglycerate mutase like-protein; Provisional
Probab=98.72 E-value=3.7e-08 Score=83.33 Aligned_cols=102 Identities=41% Similarity=0.682 Sum_probs=69.8
Q ss_pred eEEecCCCCCCCCCCCCCccCccccCCCcccCCCCCCCCCCCCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechHHH
Q psy12135 4 QIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSL 83 (212)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~~i 83 (212)
+.|+.+|..+||+.+..++.|.. .+..|. ......+|+|||+.++.+|+..+|++++......+++|+||+||++|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~p~gES~~~~~~Rv~~~l~~li~~~~~~~~~vliVsHG~vi 173 (236)
T PTZ00123 98 KIWRRSYDIPPPPLEKSDERYPG--NDPVYK--DIPKDALPNTECLKDTVERVLPYWEDHIAPDILAGKKVLVAAHGNSL 173 (236)
T ss_pred HHHhcccCCCCCCcccccccccc--cchhhh--ccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCHHHH
Confidence 45888888888877766666654 333343 22234789999999999999999988765333457899999999999
Q ss_pred HHHHHhhhcCCCccccccc-cccCcch
Q psy12135 84 RGLILKVHVGRPWGLQSHV-FLLGINN 109 (212)
Q Consensus 84 rall~~ipi~~~~~LrE~~-~wEGlt~ 109 (212)
+++++.+--.....+...+ ...+++.
T Consensus 174 r~ll~~l~~~~~~~~~~~~~~n~~~~~ 200 (236)
T PTZ00123 174 RALVKYLDKMSEEDILELNIPTGVPLV 200 (236)
T ss_pred HHHHHHHhCCCHHHHhhccCCCCceEE
Confidence 9999874222222232333 5555555
No 27
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=98.70 E-value=4.9e-08 Score=82.04 Aligned_cols=83 Identities=39% Similarity=0.799 Sum_probs=59.4
Q ss_pred eEEecCCCCCCCCCCCCCccCccccCCCcccCCCCCCCCCCCCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechHHH
Q psy12135 4 QIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSL 83 (212)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~~i 83 (212)
..|+.+++..||+.++...- ..+.+++|. .+....+|+|||+.++.+|+..+|++++......+++++||+||+++
T Consensus 111 ~~w~~~~~~~~p~~~~~~~~--~~~~~~~~~--~~~~~~~p~GES~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHg~vi 186 (228)
T PRK14119 111 HIWRRSYDVKPPAETEEQRE--AYLADRRYN--HLDKRMMPYSESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSI 186 (228)
T ss_pred HHHHcccccCCCcccccccc--ccccccccc--ccccccCCCCCCHHHHHHHHHHHHHHHHHhhccCCCeEEEEeChHHH
Confidence 45888999988887643220 001223443 22334579999999999999999998775322357899999999999
Q ss_pred HHHHHhh
Q psy12135 84 RGLILKV 90 (212)
Q Consensus 84 rall~~i 90 (212)
|++++.+
T Consensus 187 r~l~~~~ 193 (228)
T PRK14119 187 RALIKYL 193 (228)
T ss_pred HHHHHHH
Confidence 9998874
No 28
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=98.64 E-value=1.2e-07 Score=79.96 Aligned_cols=83 Identities=45% Similarity=0.893 Sum_probs=59.0
Q ss_pred eEEecCCCCCCCCCCCCCccCccccCCCcccCCCCCCCCCCCCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechHHH
Q psy12135 4 QIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSL 83 (212)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~~i 83 (212)
+.|+.+++..||++..+-+|... ...+|. ++....+|+|||+.++.+|+..+|++++.+....+++++||+||++|
T Consensus 111 ~~w~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~p~GEs~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHg~~i 186 (230)
T PRK14117 111 HIWRRSYDVLPPAMAKDDEYSAH--TDRRYA--SLDDSVIPDAENLKVTLERALPFWEDKIAPALKDGKNVFVGAHGNSI 186 (230)
T ss_pred HHHhcccccCCCccccccccccc--cccccc--ccccCCCCCCCCHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHHH
Confidence 46888888888877644332111 112233 23345789999999999999999998764322345899999999999
Q ss_pred HHHHHhh
Q psy12135 84 RGLILKV 90 (212)
Q Consensus 84 rall~~i 90 (212)
|++++.+
T Consensus 187 r~ll~~~ 193 (230)
T PRK14117 187 RALVKHI 193 (230)
T ss_pred HHHHHHH
Confidence 9999873
No 29
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=98.58 E-value=1.3e-07 Score=79.48 Aligned_cols=84 Identities=39% Similarity=0.768 Sum_probs=57.7
Q ss_pred eeEEecCCCCCCCCCCCCCccCccccCCCcccCCCCCCCCCCCCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechHH
Q psy12135 3 VQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTS 82 (212)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~~ 82 (212)
++.|+++++..|++++.++.-... ....|+ .+....+|+|||+.++.+|+..+|++++......+++++||+||++
T Consensus 110 ~~~w~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~pgGEs~~~~~~Rv~~~l~~~i~~~~~~~~~vlvVsHg~v 185 (228)
T PRK14116 110 VHIWRRSYDVLPPLLDADDEGSAA--KDRRYA--NLDPRIIPGGENLKVTLERVIPFWEDHIAPDLLDGKNVIIAAHGNS 185 (228)
T ss_pred HHHHhhcccccCcccccccccccc--cchhhh--ccCccCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCeEEEEcChHH
Confidence 345888888888766543321110 112222 1223467999999999999999998877522235789999999999
Q ss_pred HHHHHHhh
Q psy12135 83 LRGLILKV 90 (212)
Q Consensus 83 irall~~i 90 (212)
||++++.+
T Consensus 186 ir~ll~~~ 193 (228)
T PRK14116 186 LRALTKYI 193 (228)
T ss_pred HHHHHHHH
Confidence 99998873
No 30
>TIGR01258 pgm_1 phosphoglycerate mutase, BPG-dependent, family 1. Most members of this family are phosphoglycerate mutase (EC 5.4.2.1). This enzyme interconverts 2-phosphoglycerate and 3-phosphoglycerate. The enzyme is transiently phosphorylated on an active site histidine by 2,3-diphosphoglyerate, which is both substrate and product. Some members of this family have are phosphoglycerate mutase as a minor activity and act primarily as a bisphoglycerate mutase, interconverting 2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC 5.4.2.4). This model is designated as a subfamily for this reason. The second and third paralogs in S. cerevisiae are somewhat divergent and apparently inactive (see PUBMED:9544241) but are also part of this subfamily phylogenetically.
Probab=98.57 E-value=1.8e-07 Score=79.65 Aligned_cols=83 Identities=47% Similarity=0.907 Sum_probs=61.2
Q ss_pred eEEecCCCCCCCCCCCCCccCccccCCCcccCCCCCCCCCCCCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechHHH
Q psy12135 4 QIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSL 83 (212)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~~i 83 (212)
..|..+++..||+|++.-+...+ .+..|+. .....+|+|||+.++.+|+..++++++......+++++|||||++|
T Consensus 110 ~~w~~~~~~~~~~~~~~~~~~~~--~d~~y~~--~~~~~~p~GES~~~~~~Rv~~~l~~l~~~~~~~~~~vlvVsHg~vi 185 (245)
T TIGR01258 110 NIWRRSFDVPPPPIDESDPRSPH--NDPRYAH--LDPKVLPLTESLKDTIARVLPYWNDEIAPDLLSGKRVLIVAHGNSL 185 (245)
T ss_pred HHHHhhccCCCCcCCcccccccc--cChhhhc--CCcccCCCCCCHHHHHHHHHHHHHHHHhhhhcCCCEEEEEcChHHH
Confidence 45788888888888766655543 2234441 1223578999999999999999988764322456899999999999
Q ss_pred HHHHHhh
Q psy12135 84 RGLILKV 90 (212)
Q Consensus 84 rall~~i 90 (212)
|++++.+
T Consensus 186 r~l~~~l 192 (245)
T TIGR01258 186 RALVKHL 192 (245)
T ss_pred HHHHHHH
Confidence 9998874
No 31
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=98.40 E-value=9.1e-07 Score=74.38 Aligned_cols=50 Identities=48% Similarity=0.860 Sum_probs=42.1
Q ss_pred CCCCCCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechHHHHHHHHhh
Q psy12135 41 DQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILKV 90 (212)
Q Consensus 41 ~~~p~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~~irall~~i 90 (212)
..+|+|||+.++.+|+..+|++++......+++++|||||++||++++.+
T Consensus 143 ~~~p~GEs~~~~~~Rv~~~l~~~~~~~~~~~~~vlvVsHggvir~ll~~~ 192 (227)
T PRK14118 143 DVVPDAENLKVTLERVLPFWEDQIAPALLSGKRVLVAAHGNSLRALAKHI 192 (227)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhhhcCCCeEEEEeCHHHHHHHHHHH
Confidence 35789999999999999999887753224578999999999999998873
No 32
>KOG0234|consensus
Probab=98.39 E-value=7e-07 Score=81.00 Aligned_cols=51 Identities=31% Similarity=0.408 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHhHHHHHHHHhHhhhcCCCEEEEEeccHHHHHHHHHhhCCCCCCC
Q psy12135 156 FPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLREP 211 (212)
Q Consensus 156 ~p~gES~~~v~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ir~ll~~l~g~~~~~~ 211 (212)
.|+|||+.|+..|+.+.+-+ +. +.. +|||+||-.+||+|+.++++.+.+++
T Consensus 352 y~~gESy~D~v~RlePvImE-lE---r~~-~Vlvi~Hqavircll~Yf~~~~~~e~ 402 (438)
T KOG0234|consen 352 YPGGESYSDLVQRLEPVIME-LE---RQE-NVLVITHQAVIRCLLAYFLNCSPVEL 402 (438)
T ss_pred cCCCCCHHHHHHhhhhHhHh-hh---hcc-cEEEEecHHHHHHHHHHHhcCCHhhc
Confidence 78999999999999999888 33 334 49999999999999999999886543
No 33
>PRK14120 gpmA phosphoglyceromutase; Provisional
Probab=98.36 E-value=1e-06 Score=75.23 Aligned_cols=81 Identities=43% Similarity=0.891 Sum_probs=56.4
Q ss_pred eEEecCCCCCCCCCCCCCccCccccCCCcccCCCCCCCCCCCCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechHHH
Q psy12135 4 QIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSL 83 (212)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~~i 83 (212)
..|+++++-+||++..+-+|-+. -+..|.. -..+|+|||+.++.+|+..+|++++....+.+++++||+||++|
T Consensus 114 ~~w~~~~~~~~p~~~~~~~~~~~--~d~~~~~----~~~~p~GES~~~~~~Rv~~~l~~~~~~~~~~~~~iliVsHggvi 187 (249)
T PRK14120 114 MLWRRSYDTPPPPIEDGSEYSQD--NDPRYAD----LGVGPRTECLKDVVARFLPYWEDDIVPDLKAGKTVLIAAHGNSL 187 (249)
T ss_pred HHHHhccccCCCccccccccccc--cCccccc----cCCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCEEEEEeCHHHH
Confidence 34778888888777644444322 1112210 01358999999999999999987654323467899999999999
Q ss_pred HHHHHhh
Q psy12135 84 RGLILKV 90 (212)
Q Consensus 84 rall~~i 90 (212)
|++++.+
T Consensus 188 r~l~~~~ 194 (249)
T PRK14120 188 RALVKHL 194 (249)
T ss_pred HHHHHHH
Confidence 9998863
No 34
>PRK14115 gpmA phosphoglyceromutase; Provisional
Probab=98.31 E-value=1.7e-06 Score=73.85 Aligned_cols=50 Identities=58% Similarity=1.019 Sum_probs=42.0
Q ss_pred CCCCCCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechHHHHHHHHhh
Q psy12135 41 DQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILKV 90 (212)
Q Consensus 41 ~~~p~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~~irall~~i 90 (212)
..+|+|||+.++.+|+..+|++++....+.+++++|||||++|+++++.+
T Consensus 143 ~~~p~GES~~~~~~Rv~~~l~~~i~~~~~~~~~vlvVtHggvir~l~~~l 192 (247)
T PRK14115 143 EELPLTESLKDTIARVLPYWNETIAPQLKSGKRVLIAAHGNSLRALVKYL 192 (247)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeChHHHHHHHHHH
Confidence 46789999999999999999886643234578999999999999998874
No 35
>KOG0235|consensus
Probab=98.13 E-value=6e-06 Score=68.89 Aligned_cols=71 Identities=38% Similarity=0.625 Sum_probs=59.6
Q ss_pred CCCCCCCCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechHHHHHHHHhhhcCCCccccccccccCcch
Q psy12135 39 NEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWGLQSHVFLLGINN 109 (212)
Q Consensus 39 ~~~~~p~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~~irall~~ipi~~~~~LrE~~~wEGlt~ 109 (212)
.....|.+||+.+++.|+..||++.+.+....+++|+|++||+++|+++..+.-.......+.+.-.|.++
T Consensus 124 ~~~~~p~~EsL~~~~~R~~~~~~e~i~~~~~~gk~Vli~aHGnsLR~i~~~l~g~s~~~i~~~~~~t~vp~ 194 (214)
T KOG0235|consen 124 DEIPLPDGESLKDCLDRLLPFWNEEIAKESKEGKNVLIVAHGNSLRAIVKHLEGISDEAIKELNLPTGVPI 194 (214)
T ss_pred CcCCCCCCccHHHHHHHHHHHHHHhhhhhhcCCcEEEEEcCcHHHHHHHHHHhcCCHhhhhheecccCCce
Confidence 34568899999999999999999999887888999999999999999998876666666766664456666
No 36
>PRK01112 phosphoglyceromutase; Provisional
Probab=98.11 E-value=7.8e-06 Score=68.90 Aligned_cols=53 Identities=42% Similarity=0.698 Sum_probs=43.2
Q ss_pred CCCCCCCCCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechHHHHHHHHhh
Q psy12135 38 PNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILKV 90 (212)
Q Consensus 38 ~~~~~~p~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~~irall~~i 90 (212)
+....+|+|||+.++.+|+..+|++++......+++++||+||++||++++.+
T Consensus 140 ~~~~~~p~GES~~d~~~Rv~~~l~~~~~~~~~~~~~ilVVsHg~vir~l~~~l 192 (228)
T PRK01112 140 SYKTAPPQGESLEDTGQRTLPYFQNRILPHLQQGKNVFVSAHGNSLRSLIMDL 192 (228)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeCHHHHHHHHHHH
Confidence 33467899999999999999999876643223568999999999999998763
No 37
>PRK13463 phosphatase PhoE; Provisional
Probab=98.00 E-value=1.4e-05 Score=65.90 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=43.2
Q ss_pred CCCCCCCCCCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechHHHHHHHHhh
Q psy12135 37 GPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILKV 90 (212)
Q Consensus 37 ~~~~~~~p~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~~irall~~i 90 (212)
.+....+|+|||+.++.+|+..+++.+.. .+.+++++||+||+++|++++.+
T Consensus 111 ~~~~~~~~~gEs~~~~~~R~~~~l~~i~~--~~~~~~vlvVsHg~~ir~~~~~~ 162 (203)
T PRK13463 111 EPHLFQSTSGENFEAVHKRVIEGMQLLLE--KHKGESILIVSHAAAAKLLVGHF 162 (203)
T ss_pred ChhccCCCCCeEHHHHHHHHHHHHHHHHH--hCCCCEEEEEeChHHHHHHHHHH
Confidence 34455678999999999999999988664 34568999999999999998873
No 38
>PRK13462 acid phosphatase; Provisional
Probab=97.93 E-value=1.7e-05 Score=65.61 Aligned_cols=46 Identities=22% Similarity=0.245 Sum_probs=39.8
Q ss_pred CCCCCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechHHHHHHHHh
Q psy12135 42 QFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILK 89 (212)
Q Consensus 42 ~~p~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~~irall~~ 89 (212)
..|+|||+.++.+|+..+++++.. ....++++||+||+++|++++.
T Consensus 112 ~~p~gES~~~~~~Rv~~~l~~i~~--~~~~~~vliVsHg~vir~ll~~ 157 (203)
T PRK13462 112 GCPGGESVAQVNERADRAVALALE--HMESRDVVFVSHGHFSRAVITR 157 (203)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHH--hCCCCCEEEEeCCHHHHHHHHH
Confidence 458999999999999999988654 2456889999999999999877
No 39
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=97.91 E-value=2.5e-05 Score=62.38 Aligned_cols=51 Identities=29% Similarity=0.473 Sum_probs=42.5
Q ss_pred CCCCCCCCCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechHHHHHHHHhh
Q psy12135 38 PNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILKV 90 (212)
Q Consensus 38 ~~~~~~p~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~~irall~~i 90 (212)
+....+|+|||..++.+|+..+++++... ...++++||+||++++++++.+
T Consensus 106 ~~~~~~~~gEs~~~~~~R~~~~~~~l~~~--~~~~~vlvVsHg~~i~~l~~~~ 156 (177)
T TIGR03162 106 WQHARPPGGESFADFYQRVSEFLEELLKA--HEGDNVLIVTHGGVIRALLAHL 156 (177)
T ss_pred cccCCCcCCCCHHHHHHHHHHHHHHHHHh--CCCCeEEEEECHHHHHHHHHHH
Confidence 44457889999999999999999887652 3568999999999999988764
No 40
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=97.90 E-value=2.6e-05 Score=64.14 Aligned_cols=53 Identities=21% Similarity=0.305 Sum_probs=42.2
Q ss_pred CCCCCCCCCccHHHHHHHHHHHHHHhhhhhh---hcCceEEEEechHHHHHHHHhh
Q psy12135 38 PNEDQFPHTESLKETIMRVLPYWNENIATEI---KQGKKVLVVTHGTSLRGLILKV 90 (212)
Q Consensus 38 ~~~~~~p~gEsl~~~~~Rv~~~~~~iis~~~---ra~~tvliVaHg~~irall~~i 90 (212)
+....+|+|||+.++.+|+..+++++..... ...++++||+||++|+++++.+
T Consensus 108 ~~~~~~p~gEs~~~~~~R~~~~l~~~~~~~~~~~~~~~~vliVsHg~~ir~ll~~~ 163 (204)
T TIGR03848 108 PSAAVFPGGESLAQVQARAVAAVREHDARLAAEHGPDAVWVACSHGDVIKSVLADA 163 (204)
T ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhccCCCCEEEEEeCChHHHHHHHHH
Confidence 4445679999999999999999888653211 2457899999999999998773
No 41
>PRK01295 phosphoglyceromutase; Provisional
Probab=97.89 E-value=3.3e-05 Score=63.95 Aligned_cols=51 Identities=43% Similarity=0.702 Sum_probs=39.6
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechHHHHHHHHhh
Q psy12135 40 EDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILKV 90 (212)
Q Consensus 40 ~~~~p~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~~irall~~i 90 (212)
...+|+|||+.++.+|+..++.+.+......+++++||+||++||++++.+
T Consensus 119 ~~~~p~GES~~~~~~Rv~~~~~~~i~~~~~~~~~vliVtHg~~ir~l~~~~ 169 (206)
T PRK01295 119 DVPPPGGESLKDTGARVLPYYLQEILPRVLRGERVLVAAHGNSLRALVMVL 169 (206)
T ss_pred CCCCcCCCCHHHHHHHHHHHHHHHHHHhccCCCeEEEEcChHHHHHHHHHH
Confidence 457899999999999999875433322123568999999999999998763
No 42
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=97.88 E-value=2.9e-05 Score=63.63 Aligned_cols=49 Identities=20% Similarity=0.219 Sum_probs=41.4
Q ss_pred CCCCCCCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechHHHHHHHHhh
Q psy12135 40 EDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILKV 90 (212)
Q Consensus 40 ~~~~p~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~~irall~~i 90 (212)
...+|+|||+.++.+|+..+++++.. ....++++||+||++++++++.+
T Consensus 112 ~~~~~~gEs~~~~~~Rv~~~l~~l~~--~~~~~~iliVsHg~~i~~l~~~~ 160 (199)
T PRK15004 112 HAIPTNGEGFQAFSQRVERFIARLSA--FQHYQNLLIVSHQGVLSLLIARL 160 (199)
T ss_pred hcCCCCCcCHHHHHHHHHHHHHHHHH--hCCCCeEEEEcChHHHHHHHHHH
Confidence 34568999999999999999988764 24568999999999999998874
No 43
>PRK03482 phosphoglycerate mutase; Provisional
Probab=97.85 E-value=4.2e-05 Score=63.35 Aligned_cols=48 Identities=27% Similarity=0.463 Sum_probs=40.9
Q ss_pred CCCCCCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechHHHHHHHHhh
Q psy12135 41 DQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILKV 90 (212)
Q Consensus 41 ~~~p~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~~irall~~i 90 (212)
..+|+|||+.++.+|+..++++++. ...+++++||+||++++++++.+
T Consensus 114 ~~~p~gEs~~~~~~Rv~~~l~~~~~--~~~~~~vliVsHg~~i~~l~~~l 161 (215)
T PRK03482 114 GRIPEGESMQELSDRMHAALESCLE--LPQGSRPLLVSHGIALGCLVSTI 161 (215)
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHH--hCCCCeEEEEeCcHHHHHHHHHH
Confidence 4578999999999999999988654 24567899999999999998873
No 44
>COG0406 phoE Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
Probab=97.55 E-value=0.00023 Score=58.39 Aligned_cols=52 Identities=33% Similarity=0.459 Sum_probs=42.3
Q ss_pred CCCCCCCCCCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechHHHHHHHHhh
Q psy12135 37 GPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILKV 90 (212)
Q Consensus 37 ~~~~~~~p~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~~irall~~i 90 (212)
.+.....|++|++.++.+|+..+++++... ...+++++|+||++||++++.+
T Consensus 113 ~~~~~~~~~gEs~~~~~~R~~~~~~~~~~~--~~~~~vlvVsHg~~ir~l~~~~ 164 (208)
T COG0406 113 DPYLAPPPGGESLADVSKRVVAALAELLRS--PPGNNVLVVSHGGVIRALLAYL 164 (208)
T ss_pred CccccCCCCCCCHHHHHHHHHHHHHHHHHh--cCCCeEEEEEChHHHHHHHHHh
Confidence 455667778999999999999999887642 2333799999999999988874
No 45
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=97.53 E-value=0.00021 Score=55.44 Aligned_cols=40 Identities=45% Similarity=0.576 Sum_probs=34.1
Q ss_pred HhHHHHHHHHhHhhhcCCCEEEEEeccHHHHHHHHHhhCCCC
Q psy12135 167 MRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSL 208 (212)
Q Consensus 167 ~R~~~~~~~~i~~~~~~~~~vliVsHG~~ir~ll~~l~g~~~ 208 (212)
+|+..+++++.. . +.+++|||||||++|+++++++++.+.
T Consensus 84 ~R~~~~~~~l~~-~-~~~~~iliV~H~~~i~~~~~~l~~~~~ 123 (153)
T cd07067 84 ARVLPALEELIA-P-HDGKNVLIVSHGGVLRALLAYLLGLSD 123 (153)
T ss_pred HHHHHHHHHHHH-h-CCCCeEEEEeChHHHHHHHHHHhCCCH
Confidence 899999998543 2 257899999999999999999999764
No 46
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=97.53 E-value=0.00021 Score=55.21 Aligned_cols=47 Identities=34% Similarity=0.429 Sum_probs=38.4
Q ss_pred CCCCCCCCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechHHHHHH
Q psy12135 39 NEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGL 86 (212)
Q Consensus 39 ~~~~~p~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~~iral 86 (212)
....+|++||..++.+|+..+++.+.. .....++++||+||++|+++
T Consensus 112 ~~~~~~~~Es~~~~~~R~~~~~~~l~~-~~~~~~~vliVsHg~~i~~~ 158 (158)
T PF00300_consen 112 YFYRPPGGESWEDFQQRVKQFLDELIA-YKRPGENVLIVSHGGFIRAL 158 (158)
T ss_dssp SSCGSTTSHHHHHHHHHHHHHHHHHHH-HHHTTSEEEEEE-HHHHHHH
T ss_pred cccccccCCCHHHHHHHHHHHHHHHHH-HhCCCCEEEEEecHHHHHhC
Confidence 345678999999999999999988774 24678999999999999864
No 47
>smart00855 PGAM Phosphoglycerate mutase family. Phosphoglycerate mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate PUBMED:2847721, PUBMED:2831102, PUBMED:10958932. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein.
Probab=97.48 E-value=0.00014 Score=56.83 Aligned_cols=47 Identities=36% Similarity=0.483 Sum_probs=37.4
Q ss_pred CCCCCCCCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechHHHHH
Q psy12135 39 NEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRG 85 (212)
Q Consensus 39 ~~~~~p~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~~ira 85 (212)
....+|+||++.++..|+..+++++........++++||+||+++++
T Consensus 108 ~~~~~~~gEs~~~~~~Rv~~~~~~i~~~~~~~~~~vlvVtHg~~ir~ 154 (155)
T smart00855 108 LGAAPPGGESLADVVERLVRALEELIATHDKSGQNVLIVSHGGVIRA 154 (155)
T ss_pred CCCCCcCCCCHHHHHHHHHHHHHHHHHhcccCCCeEEEEECCccccc
Confidence 34567899999999999999998876431125688999999998875
No 48
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=97.47 E-value=0.00024 Score=63.77 Aligned_cols=48 Identities=31% Similarity=0.285 Sum_probs=41.3
Q ss_pred CCCCCCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechHHHHHHHHhh
Q psy12135 41 DQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILKV 90 (212)
Q Consensus 41 ~~~p~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~~irall~~i 90 (212)
..+|+||++.++.+|+..+++++.. .+.+++++||+||++|+++++.+
T Consensus 284 ~~~p~gEs~~~~~~Rv~~~l~~l~~--~~~~~~vlvVtHg~~ir~ll~~~ 331 (372)
T PRK07238 284 VAPPGGESFDAVARRVRRARDRLIA--EYPGATVLVVSHVTPIKTLLRLA 331 (372)
T ss_pred CCCcCCCCHHHHHHHHHHHHHHHHH--HCCCCeEEEEEChHHHHHHHHHH
Confidence 4678999999999999999988664 24568999999999999999874
No 49
>KOG3734|consensus
Probab=97.34 E-value=0.00044 Score=59.61 Aligned_cols=51 Identities=18% Similarity=0.233 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHhHHHHHHHHhHhhhcCCCEEEEEeccHHHHHHHHHhhCCCC
Q psy12135 156 FPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSL 208 (212)
Q Consensus 156 ~p~gES~~~v~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ir~ll~~l~g~~~ 208 (212)
+-.|||++++..|....+++++. ...++++||||||.++.+.-+.+.|.+.
T Consensus 168 ~~~~es~e~~~~R~~~~~k~i~~--k~~~~~lLIV~H~~sv~~~~~~l~~~~~ 218 (272)
T KOG3734|consen 168 PRWGESLEDCNDRIQKVFKAIAD--KYPNENLLIVAHGSSVDTCSAQLQGLPV 218 (272)
T ss_pred ccccccHHHHHHHHHHHHHHHHH--hcCCCceEEEeccchHHHHHHHhcCCCc
Confidence 34799999999999999999654 3578889999999999999999988553
No 50
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=97.25 E-value=0.00068 Score=52.05 Aligned_cols=42 Identities=36% Similarity=0.468 Sum_probs=34.4
Q ss_pred HhHHHHHHHHhHhhhcCCCEEEEEeccHHHHHHHHHhhCCCC
Q psy12135 167 MRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSL 208 (212)
Q Consensus 167 ~R~~~~~~~~i~~~~~~~~~vliVsHG~~ir~ll~~l~g~~~ 208 (212)
.|+..++.+++......+++|++||||++|+.+++++.+.+.
T Consensus 82 ~r~~~~~~~~~~~~~~~~~~iliv~H~~~i~~~~~~l~~~~~ 123 (153)
T cd07040 82 ARVLNALLELLARHLLDGKNVLIVSHGGTIRALLAALLGLSD 123 (153)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHhCcCH
Confidence 999999998654211257899999999999999999998764
No 51
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=96.92 E-value=0.0018 Score=62.57 Aligned_cols=50 Identities=26% Similarity=0.366 Sum_probs=41.0
Q ss_pred CCCCCCCCCCccHHHHH-HHHHHHHHHhhhhhhhcCceEEEEechHHHHHHHHhh
Q psy12135 37 GPNEDQFPHTESLKETI-MRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILKV 90 (212)
Q Consensus 37 ~~~~~~~p~gEsl~~~~-~Rv~~~~~~iis~~~ra~~tvliVaHg~~irall~~i 90 (212)
+|....+|+|||+.++. +|+..+++++. +..++++||+||++||++++.+
T Consensus 546 d~~~~~~P~GES~~d~~~~R~~~~i~~l~----~~~~~ilvVsHg~vir~ll~~~ 596 (664)
T PTZ00322 546 DPYYTAWPNGECIHQVFNARLEPHIHDIQ----ASTTPVLVVSHLHLLQGLYSYF 596 (664)
T ss_pred CCCcCCCCCCcCHHHHHHHHHHHHHHHHH----ccCCCEEEEeCcHHHHHHHHHH
Confidence 45566789999999976 79999888753 3447899999999999999874
No 52
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=95.40 E-value=0.024 Score=49.77 Aligned_cols=47 Identities=17% Similarity=0.290 Sum_probs=33.7
Q ss_pred CCCCccHHHHHHHHHHHHHHhhhhhhh-cCceEEEEechHHHHHHHHhh
Q psy12135 43 FPHTESLKETIMRVLPYWNENIATEIK-QGKKVLVVTHGTSLRGLILKV 90 (212)
Q Consensus 43 ~p~gEsl~~~~~Rv~~~~~~iis~~~r-a~~tvliVaHg~~irall~~i 90 (212)
++++|+ .+..+|+..+++++...... ..++++||+||++||++++.+
T Consensus 204 ~~gee~-~~~~~Rv~~al~~i~~r~~~~~~~~vLVVsHGgvIR~ll~~l 251 (299)
T PTZ00122 204 PTIEEI-LEDMKRIEAAFEKYFHRPVEDEDSVEIIVCHGNVIRYLVCRA 251 (299)
T ss_pred CCcchH-HHHHHHHHHHHHHHHHhcccCCCCeEEEEeCChHHHHHHHHH
Confidence 345555 66689999999886642111 235689999999999999874
No 53
>KOG4609|consensus
Probab=95.16 E-value=0.0059 Score=51.09 Aligned_cols=43 Identities=12% Similarity=0.160 Sum_probs=29.3
Q ss_pred HhHHHHHHHHh---HhhhcCCCEEEEEeccHHHHHHHHHhhCCCCC
Q psy12135 167 MRVLPYWNENI---ATEIKQGKKVLVVTHGTSLRGLVKHIERKSLR 209 (212)
Q Consensus 167 ~R~~~~~~~~i---~~~~~~~~~vliVsHG~~ir~ll~~l~g~~~~ 209 (212)
.|+.++|...+ .+....+.--|||+|++|||-++|..+.+|.+
T Consensus 197 aRIEaafRryfhRA~p~QeedSy~liV~HaNVIRY~icRALq~Ppe 242 (284)
T KOG4609|consen 197 ARIEAAFRRYFHRASPSQEEDSYELIVCHANVIRYFICRALQFPPE 242 (284)
T ss_pred hHHHHHHHHHHhhcCcccccccEEEEEeecchhhhhhhhhhcCCcc
Confidence 45555554433 22212234689999999999999999988875
No 54
>PRK06193 hypothetical protein; Provisional
Probab=94.80 E-value=0.043 Score=45.68 Aligned_cols=45 Identities=13% Similarity=0.124 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHhHHHHHHHHhHhhhcCCCEEEEEeccHHHHHHHHHhhC
Q psy12135 157 PHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIER 205 (212)
Q Consensus 157 p~gES~~~v~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ir~ll~~l~g 205 (212)
+.+|+.....+|+..+++++ . ..+++||||+|+.+|+.+..+..+
T Consensus 132 ~~~~~~~~y~~~l~~~I~~l-~---~~~~~vLlVgHnp~i~~l~g~~~~ 176 (206)
T PRK06193 132 VPAERNALLKAGLRPLLTTP-P---DPGTNTVLVGHDDNLEAATGIYPE 176 (206)
T ss_pred CChhhHHHHHHHHHHHHhhC-C---CCCCeEEEEeCchHHHHHhCCCCc
Confidence 35789999999999999883 2 467899999999999999887766
No 55
>KOG4754|consensus
Probab=91.85 E-value=0.36 Score=40.50 Aligned_cols=44 Identities=32% Similarity=0.367 Sum_probs=37.5
Q ss_pred CCCCHHHHHHhHHHHHHHHhHhhhcCCCEEEEEeccHHHHHHHHHhh
Q psy12135 158 HTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIE 204 (212)
Q Consensus 158 ~gES~~~v~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ir~ll~~l~ 204 (212)
--|+.++...|-..|++.+ .. .+.+-|.||||+|-|+.+++.+-
T Consensus 157 y~ed~e~~a~r~re~~~~l-~~--r~ek~iavvths~fl~~llk~i~ 200 (248)
T KOG4754|consen 157 YREDDEESAARSREFLEWL-AK--RPEKEIAVVTHSGFLRSLLKKIQ 200 (248)
T ss_pred chhhHHHHHHhHHHHHHHH-Hh--CccceEEEEEehHHHHHHHHHhc
Confidence 3589999999999999984 42 56788999999999999998775
No 56
>KOG3734|consensus
Probab=91.75 E-value=0.37 Score=41.75 Aligned_cols=45 Identities=20% Similarity=0.227 Sum_probs=37.5
Q ss_pred CCCCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechHHHHHHHHh
Q psy12135 43 FPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILK 89 (212)
Q Consensus 43 ~p~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~~irall~~ 89 (212)
+-.+||..+...|....+..+++ +...+++|||+||.++.+..+.
T Consensus 168 ~~~~es~e~~~~R~~~~~k~i~~--k~~~~~lLIV~H~~sv~~~~~~ 212 (272)
T KOG3734|consen 168 PRWGESLEDCNDRIQKVFKAIAD--KYPNENLLIVAHGSSVDTCSAQ 212 (272)
T ss_pred ccccccHHHHHHHHHHHHHHHHH--hcCCCceEEEeccchHHHHHHH
Confidence 55899999999999999988886 4667889999999988765443
No 57
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=91.71 E-value=0.3 Score=40.55 Aligned_cols=48 Identities=13% Similarity=0.155 Sum_probs=36.9
Q ss_pred CCCHHHHHHhHHHHHHHHhHhhhcCCCEEEEEeccHHHHHHHHHhhCCCC
Q psy12135 159 TESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSL 208 (212)
Q Consensus 159 gES~~~v~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ir~ll~~l~g~~~ 208 (212)
-|.+.+.-.+...++.+++.. .++++||||+|+..+..+...+.|.+.
T Consensus 128 ~~~Lye~~~~~~~~i~~~i~~--~~~~tVLIVGHnp~i~~La~~~~~~~~ 175 (201)
T PRK15416 128 DKRLSDCGNGIYSAIKDLQRK--SPDKNIVIFTHNHCLTYIAKDKRGVKF 175 (201)
T ss_pred cHHHhhcCchhHHHHHHHHHh--CCCCEEEEEeCchhHHHHHHHhcCCCC
Confidence 356777777787778876542 356899999999999999998776543
No 58
>KOG0234|consensus
Probab=91.67 E-value=0.36 Score=44.41 Aligned_cols=48 Identities=29% Similarity=0.411 Sum_probs=37.4
Q ss_pred CCCCCCCCCCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechHHHHHHHHh
Q psy12135 37 GPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILK 89 (212)
Q Consensus 37 ~~~~~~~p~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~~irall~~ 89 (212)
+.-.+..|+||++.++..|+.+ +|-.+.|... |+|++|..++||++..
T Consensus 346 dky~yry~~gESy~D~v~RleP----vImElEr~~~-Vlvi~Hqavircll~Y 393 (438)
T KOG0234|consen 346 DKYRYRYPGGESYSDLVQRLEP----VIMELERQEN-VLVITHQAVIRCLLAY 393 (438)
T ss_pred CcceeecCCCCCHHHHHHhhhh----HhHhhhhccc-EEEEecHHHHHHHHHH
Confidence 3344578999999999999654 3433456655 9999999999999987
No 59
>cd07067 HP_PGM_like Histidine phosphatase domain found in phosphoglycerate mutases and related proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Subgroup of the catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This subgroup contains cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example, F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent His-to-Asp phos
Probab=90.78 E-value=0.48 Score=36.33 Aligned_cols=41 Identities=46% Similarity=0.701 Sum_probs=30.2
Q ss_pred CccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechHHHHHHHHhh
Q psy12135 46 TESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILKV 90 (212)
Q Consensus 46 gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~~irall~~i 90 (212)
.+.+.+ +|+..+++.+... ...++++||+|+++++++++.+
T Consensus 78 ~~~L~e--~R~~~~~~~l~~~--~~~~~iliV~H~~~i~~~~~~l 118 (153)
T cd07067 78 DPRLRE--ARVLPALEELIAP--HDGKNVLIVSHGGVLRALLAYL 118 (153)
T ss_pred CccchH--HHHHHHHHHHHHh--CCCCeEEEEeChHHHHHHHHHH
Confidence 444544 7787878776541 2578999999999999988764
No 60
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=88.42 E-value=1 Score=35.32 Aligned_cols=24 Identities=25% Similarity=0.156 Sum_probs=21.6
Q ss_pred CCCEEEEEeccHHHHHHHHHhhCC
Q psy12135 183 QGKKVLVVTHGTSLRGLVKHIERK 206 (212)
Q Consensus 183 ~~~~vliVsHG~~ir~ll~~l~g~ 206 (212)
..++||||+|+..|..++.++.+.
T Consensus 99 ~~~~vliVgH~P~i~~l~~~l~~~ 122 (152)
T TIGR00249 99 GVASVLLVSHLPLVGYLVAELCPG 122 (152)
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCC
Confidence 457999999999999999999874
No 61
>cd07040 HP Histidine phosphatase domain found in a functionally diverse set of proteins, mostly phosphatases; contains a His residue which is phosphorylated during the reaction. Catalytic domain of a functionally diverse set of proteins, most of which are phosphatases. The conserved catalytic core of this domain contains a His residue which is phosphorylated in the reaction. This set of proteins includes cofactor-dependent and cofactor-independent phosphoglycerate mutases (dPGM, and BPGM respectively), fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, histidine acid phosphatases, phytases, and related proteins. Functions include roles in metabolism, signaling, or regulation, for example F26BPase affects glycolysis and gluconeogenesis through controlling the concentration of F26BP; BPGM controls the concentration of 2,3-BPG (the main allosteric effector of hemoglobin in human blood cells); human Sts-1 is a T-cell regulator; Escherichia coli Six A participates in the ArcB-dependent Hi
Probab=88.32 E-value=0.91 Score=34.38 Aligned_cols=37 Identities=38% Similarity=0.597 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhhhhhhcCceEEEEechHHHHHHHHhh
Q psy12135 54 MRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILKV 90 (212)
Q Consensus 54 ~Rv~~~~~~iis~~~ra~~tvliVaHg~~irall~~i 90 (212)
+|+..++..+........+++++|+|+++|+.+++.+
T Consensus 82 ~r~~~~~~~~~~~~~~~~~~iliv~H~~~i~~~~~~l 118 (153)
T cd07040 82 ARVLNALLELLARHLLDGKNVLIVSHGGTIRALLAAL 118 (153)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHH
Confidence 6676767665542112468899999999999988774
No 62
>PRK06193 hypothetical protein; Provisional
Probab=66.68 E-value=12 Score=31.15 Aligned_cols=40 Identities=15% Similarity=0.122 Sum_probs=28.7
Q ss_pred CCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechHHHHHHHH
Q psy12135 45 HTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLIL 88 (212)
Q Consensus 45 ~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~~irall~ 88 (212)
..++.....+|+..+++.+. ...+++++|+|+..++++..
T Consensus 133 ~~~~~~~y~~~l~~~I~~l~----~~~~~vLlVgHnp~i~~l~g 172 (206)
T PRK06193 133 PAERNALLKAGLRPLLTTPP----DPGTNTVLVGHDDNLEAATG 172 (206)
T ss_pred ChhhHHHHHHHHHHHHhhCC----CCCCeEEEEeCchHHHHHhC
Confidence 45666666777766665532 56789999999998887654
No 63
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=61.80 E-value=17 Score=28.63 Aligned_cols=23 Identities=26% Similarity=0.197 Sum_probs=20.4
Q ss_pred CCCEEEEEeccHHHHHHHHHhhC
Q psy12135 183 QGKKVLVVTHGTSLRGLVKHIER 205 (212)
Q Consensus 183 ~~~~vliVsHG~~ir~ll~~l~g 205 (212)
..++||||+|.-.|..+...|.+
T Consensus 99 ~~~~vllVgH~P~l~~l~~~L~~ 121 (159)
T PRK10848 99 GVASVLVISHLPLVGYLVAELCP 121 (159)
T ss_pred CCCeEEEEeCcCcHHHHHHHHhC
Confidence 34699999999999999999886
No 64
>PRK04946 hypothetical protein; Provisional
Probab=54.44 E-value=45 Score=27.17 Aligned_cols=45 Identities=13% Similarity=-0.002 Sum_probs=36.6
Q ss_pred CCCCHHHHHHhHHHHHHHHhHhhhcCCCEEEEEecc---HHHHHHHHHhhCC
Q psy12135 158 HTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHG---TSLRGLVKHIERK 206 (212)
Q Consensus 158 ~gES~~~v~~R~~~~~~~~i~~~~~~~~~vliVsHG---~~ir~ll~~l~g~ 206 (212)
.|=+.++....+..|+.+.. ..+...+.|-|| |+|+..+...+..
T Consensus 101 hG~~~eeA~~~L~~fl~~a~----~~g~r~v~IIHGkG~gvLk~~V~~wL~q 148 (181)
T PRK04946 101 HGLTQLQAKQELGALIAACR----KEHVFCACVMHGHGKHILKQQTPLWLAQ 148 (181)
T ss_pred CCCCHHHHHHHHHHHHHHHH----HcCCCEEEEEcCCCHhHHHHHHHHHHcC
Confidence 68899999999999998842 356677788899 8999888887753
No 65
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=52.80 E-value=44 Score=29.34 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=29.2
Q ss_pred HHHHhHHHHHHHHhHhhhcCCCEEEEEeccHHHHHHHHHhhCCCCC
Q psy12135 164 ETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLR 209 (212)
Q Consensus 164 ~v~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ir~ll~~l~g~~~~ 209 (212)
.+.+|+...+.. +. .+++++++|++||..-..++.++......
T Consensus 175 ~~~ari~Aa~~~-~~--~~~~~~ivlIg~G~gA~~~~~~la~~~~~ 217 (310)
T PF12048_consen 175 RLFARIEAAIAF-AQ--QQGGKNIVLIGHGTGAGWAARYLAEKPPP 217 (310)
T ss_pred HHHHHHHHHHHH-HH--hcCCceEEEEEeChhHHHHHHHHhcCCCc
Confidence 444555554443 22 24567899999999999999998765543
No 66
>PF13422 DUF4110: Domain of unknown function (DUF4110)
Probab=50.73 E-value=28 Score=25.43 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.4
Q ss_pred CCCCHHHHHHhHHHHHHHHhHh
Q psy12135 158 HTESLKETIMRVLPYWNENIAT 179 (212)
Q Consensus 158 ~gES~~~v~~R~~~~~~~~i~~ 179 (212)
-|||+.+|+.|...+|...+..
T Consensus 14 p~EsLr~Ff~RT~~~W~~~a~~ 35 (96)
T PF13422_consen 14 PFESLRDFFARTSEYWQEWAIE 35 (96)
T ss_pred CCCcHHHHHHHhHHHHHHHHHH
Confidence 5999999999999999986653
No 67
>KOG4754|consensus
Probab=48.29 E-value=49 Score=28.04 Aligned_cols=44 Identities=30% Similarity=0.370 Sum_probs=33.7
Q ss_pred CCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechHHHHHHHHhhh
Q psy12135 45 HTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILKVH 91 (212)
Q Consensus 45 ~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~~irall~~ip 91 (212)
=.|+..+.+.|-..|++- ++ +|..+-+.||+|++.|+.++..+.
T Consensus 157 y~ed~e~~a~r~re~~~~-l~--~r~ek~iavvths~fl~~llk~i~ 200 (248)
T KOG4754|consen 157 YREDDEESAARSREFLEW-LA--KRPEKEIAVVTHSGFLRSLLKKIQ 200 (248)
T ss_pred chhhHHHHHHhHHHHHHH-HH--hCccceEEEEEehHHHHHHHHHhc
Confidence 456777888887777654 43 477788999999999998887753
No 68
>PF11658 DUF3260: Protein of unknown function (DUF3260); InterPro: IPR017744 This protein was identified by the partial phylogenetic profiling algorithm [] as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation [].
Probab=42.74 E-value=50 Score=31.27 Aligned_cols=53 Identities=30% Similarity=0.336 Sum_probs=30.7
Q ss_pred CCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEe---chHHHHHHHHhhhcCCCccccccc
Q psy12135 45 HTESLKETIMRVLPYWNENIATEIKQGKKVLVVT---HGTSLRGLILKVHVGRPWGLQSHV 102 (212)
Q Consensus 45 ~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVa---Hg~~irall~~ipi~~~~~LrE~~ 102 (212)
..++.+..++++..-++..+..+.+++++|+||- ||+.+|.- -....+|||+-
T Consensus 370 s~~sY~~Ra~~Llddl~~F~~~Le~SgR~v~vv~VPEHGAAlrGD-----k~QiaGLReIP 425 (518)
T PF11658_consen 370 SLASYKPRAQKLLDDLDRFFDELEKSGRKVMVVVVPEHGAALRGD-----KMQIAGLREIP 425 (518)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecCcccccccc-----chhhccccCCC
Confidence 4455555555544434444445557777776665 99877642 12236788874
No 69
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=42.12 E-value=36 Score=29.53 Aligned_cols=31 Identities=26% Similarity=0.388 Sum_probs=19.5
Q ss_pred HHHHhHHHHHHHHhHhhhcCCCEEEEEeccHHHHH
Q psy12135 164 ETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRG 198 (212)
Q Consensus 164 ~v~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ir~ 198 (212)
+...++...+.++ ...|..|++||||++--+
T Consensus 31 ~~l~~l~~~i~~l----~~~g~~vilVssGAv~~G 61 (284)
T cd04256 31 GRLASIVEQVSEL----QSQGREVILVTSGAVAFG 61 (284)
T ss_pred HHHHHHHHHHHHH----HHCCCEEEEEeeCcHHhC
Confidence 4444544444442 235789999999987654
No 70
>TIGR03368 cellulose_yhjU cellulose synthase operon protein YhjU. This protein was identified by the partial phylogenetic profiling algorithm (PubMed:16930487) as part of the system for cellulose biosynthesis in bacteria, and in fact is found in cellulose biosynthesis gene regions. The protein was designated YhjU in Salmonella enteritidis, where disruption of its gene disrupts cellulose biosynthesis and biofilm formation (PubMed:11929533).
Probab=41.52 E-value=51 Score=31.13 Aligned_cols=53 Identities=28% Similarity=0.320 Sum_probs=28.6
Q ss_pred CCccHHHHHHHHHHHHHHhhhhhhhcCceEEEEe---chHHHHHHHHhhhcCCCccccccc
Q psy12135 45 HTESLKETIMRVLPYWNENIATEIKQGKKVLVVT---HGTSLRGLILKVHVGRPWGLQSHV 102 (212)
Q Consensus 45 ~gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVa---Hg~~irall~~ipi~~~~~LrE~~ 102 (212)
..++.+..++++..-++..+..+.+++.+++||- ||+.+|.--. ...+|||+-
T Consensus 367 s~~sY~~Ra~kLlddld~F~~~le~SgR~vvVv~VPEHGAAlrGDk~-----QisGLREIP 422 (518)
T TIGR03368 367 SLASYPLRAKKLLDDLDRFFDELEKSGRKVVVVLVPEHGAALRGDKM-----QISGLREIP 422 (518)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecCcchhcccchh-----hhccccCCC
Confidence 3444444444433333344444456777776665 9997764221 235777774
No 71
>KOG4609|consensus
Probab=40.02 E-value=45 Score=28.32 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhh---hhhhhcCceEEEEechHHHHHHHHh---hhcCC
Q psy12135 49 LKETIMRVLPYWNENI---ATEIKQGKKVLVVTHGTSLRGLILK---VHVGR 94 (212)
Q Consensus 49 l~~~~~Rv~~~~~~ii---s~~~ra~~tvliVaHg~~irall~~---ipi~~ 94 (212)
+..-..|+.++|..+. +|......--+||+|+++||-++|. +|...
T Consensus 192 y~rdgaRIEaafRryfhRA~p~QeedSy~liV~HaNVIRY~icRALq~Ppeg 243 (284)
T KOG4609|consen 192 YYRDGARIEAAFRRYFHRASPSQEEDSYELIVCHANVIRYFICRALQFPPEG 243 (284)
T ss_pred hhhcchHHHHHHHHHHhhcCcccccccEEEEEeecchhhhhhhhhhcCCcch
Confidence 3333456666665544 2212223336899999999988884 55443
No 72
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=39.53 E-value=71 Score=23.76 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=26.4
Q ss_pred CCCHHHHHHhHHHHHHHHhHhhhcCCCEEEEEeccHHHH
Q psy12135 159 TESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLR 197 (212)
Q Consensus 159 gES~~~v~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ir 197 (212)
++.+.+....+..|++..+ ..++.|||-+++|.-|
T Consensus 57 ~~~~~~~~~~~~~~i~~~~----~~~~~VlVHC~~G~~R 91 (138)
T smart00195 57 ETKISPYFPEAVEFIEDAE----KKGGKVLVHCQAGVSR 91 (138)
T ss_pred CCChHHHHHHHHHHHHHHh----cCCCeEEEECCCCCch
Confidence 5567788889999998743 4577899998877544
No 73
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=38.78 E-value=1.1e+02 Score=22.38 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=25.5
Q ss_pred HHHHhHHHHHHHHhHhhhcCCCEEEEEec--cHHHHHHHHHhh
Q psy12135 164 ETIMRVLPYWNENIATEIKQGKKVLVVTH--GTSLRGLVKHIE 204 (212)
Q Consensus 164 ~v~~R~~~~~~~~i~~~~~~~~~vliVsH--G~~ir~ll~~l~ 204 (212)
....++...+.++.. . .+..+|+|++| ||++-.++...+
T Consensus 45 ~~~~~~~~~l~~~~~-~-~~~~~i~itGHSLGGalA~l~a~~l 85 (140)
T PF01764_consen 45 SLYDQILDALKELVE-K-YPDYSIVITGHSLGGALASLAAADL 85 (140)
T ss_dssp HHHHHHHHHHHHHHH-H-STTSEEEEEEETHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-c-ccCccchhhccchHHHHHHHHHHhh
Confidence 445566667776333 2 34579999999 677777766554
No 74
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=38.30 E-value=30 Score=29.78 Aligned_cols=13 Identities=54% Similarity=0.841 Sum_probs=10.6
Q ss_pred cCCCEEEEEeccH
Q psy12135 182 KQGKKVLVVTHGT 194 (212)
Q Consensus 182 ~~~~~vliVsHG~ 194 (212)
..|++||+|||--
T Consensus 187 ~eg~tIl~vtHDL 199 (254)
T COG1121 187 QEGKTVLMVTHDL 199 (254)
T ss_pred HCCCEEEEEeCCc
Confidence 3489999999963
No 75
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=37.03 E-value=43 Score=27.79 Aligned_cols=42 Identities=12% Similarity=0.129 Sum_probs=25.5
Q ss_pred CccHHHHHHHHHHHHHHhhhhhhhcCceEEEEechHHHHHHHHh
Q psy12135 46 TESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILK 89 (212)
Q Consensus 46 gEsl~~~~~Rv~~~~~~iis~~~ra~~tvliVaHg~~irall~~ 89 (212)
-+.+.+.-.+...++.+++. ....++++||+|+..+..+...
T Consensus 128 ~~~Lye~~~~~~~~i~~~i~--~~~~~tVLIVGHnp~i~~La~~ 169 (201)
T PRK15416 128 DKRLSDCGNGIYSAIKDLQR--KSPDKNIVIFTHNHCLTYIAKD 169 (201)
T ss_pred cHHHhhcCchhHHHHHHHHH--hCCCCEEEEEeCchhHHHHHHH
Confidence 34455555555544555443 2344899999999877655443
No 76
>PF02697 DUF217: Uncharacterized ACR, COG1753; InterPro: IPR003847 This entry is represented by Natrialba phage PhiCh1, Orf96. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=36.38 E-value=29 Score=23.85 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=13.1
Q ss_pred CCCCHHHHHHhHHH
Q psy12135 158 HTESLKETIMRVLP 171 (212)
Q Consensus 158 ~gES~~~v~~R~~~ 171 (212)
+||||.+|..|+.+
T Consensus 20 ~~eSFSdvI~rli~ 33 (71)
T PF02697_consen 20 EDESFSDVIERLIE 33 (71)
T ss_pred CCCCHHHHHHHHHh
Confidence 79999999999977
No 77
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=34.28 E-value=79 Score=26.15 Aligned_cols=40 Identities=25% Similarity=0.212 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHhHHHHHHHHhHhhhcCCCEEEEEeccHHHHH
Q psy12135 157 PHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRG 198 (212)
Q Consensus 157 p~gES~~~v~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ir~ 198 (212)
+.++.-.++.++...++++.+.. ..++.+++|||=.....
T Consensus 139 ~~~~~~~~~~~~~l~~l~~~l~~--~~~~~~ivvtH~pP~~~ 178 (239)
T TIGR03729 139 KRPMSDPERTAIVLKQLKKQLNQ--LDNKQVIFVTHFVPHRD 178 (239)
T ss_pred CCCCChHHHHHHHHHHHHHHHHh--cCCCCEEEEEcccchHH
Confidence 35566778888888888886642 34578999999765443
No 78
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=33.72 E-value=48 Score=28.20 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=25.2
Q ss_pred CCCHHHHHHhHHHHHHHHhHhhhcCCCEEEEEeccHHHHH
Q psy12135 159 TESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRG 198 (212)
Q Consensus 159 gES~~~v~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ir~ 198 (212)
-+|+.|..+|+.+.+.. ..++++.++|||+++.-+
T Consensus 126 i~s~~eA~~~ive~~~~-----~~~~~~~VliaH~~~~G~ 160 (238)
T cd07397 126 VISLEESAQRIIAAAKK-----APPDLPLILLAHNGPSGL 160 (238)
T ss_pred CCCHHHHHHHHHHHhhh-----cCCCCCeEEEeCcCCcCC
Confidence 56888888888777642 135667888999987543
No 79
>PRK15088 PTS system mannose-specific transporter subunits IIAB; Provisional
Probab=31.56 E-value=3.2e+02 Score=24.23 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=15.6
Q ss_pred eEEEEechHHHHHHHHhhhcC
Q psy12135 73 KVLVVTHGTSLRGLILKVHVG 93 (212)
Q Consensus 73 tvliVaHg~~irall~~ipi~ 93 (212)
.++++|||..-.+++..+.+.
T Consensus 4 ~IIiasHG~~A~gl~~s~emI 24 (322)
T PRK15088 4 AIIIGTHGWAAEQLLKTAEML 24 (322)
T ss_pred eEEEEeCHHHHHHHHHHHHHh
Confidence 488999999887776665443
No 80
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=30.93 E-value=1.9e+02 Score=21.37 Aligned_cols=42 Identities=12% Similarity=0.098 Sum_probs=28.6
Q ss_pred CCCCCHHHHHHhHHHHHHHHhHhhhcCCCEEEEEe--ccH-HHHHHHHHh
Q psy12135 157 PHTESLKETIMRVLPYWNENIATEIKQGKKVLVVT--HGT-SLRGLVKHI 203 (212)
Q Consensus 157 p~gES~~~v~~R~~~~~~~~i~~~~~~~~~vliVs--HG~-~ir~ll~~l 203 (212)
..++|.+++.+|+..++++. ..++.|+|.| -|| +-......+
T Consensus 36 ~~~~~~~~~~~~l~~~i~~~-----~~~~~vivltDl~GGSp~n~a~~~~ 80 (116)
T TIGR00824 36 VPGENAETLQEKYNAALADL-----DTEEEVLFLVDIFGGSPYNAAARII 80 (116)
T ss_pred CCCcCHHHHHHHHHHHHHhc-----CCCCCEEEEEeCCCCCHHHHHHHHH
Confidence 46899999999999988772 3456788887 334 444444333
No 81
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=30.78 E-value=83 Score=27.03 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=23.4
Q ss_pred HHHHHhHHHHHHHHhHhhhcCCCEEEEEeccH-HHHHHH
Q psy12135 163 KETIMRVLPYWNENIATEIKQGKKVLVVTHGT-SLRGLV 200 (212)
Q Consensus 163 ~~v~~R~~~~~~~~i~~~~~~~~~vliVsHG~-~ir~ll 200 (212)
..|++++..-+++.+ .++++|++|||.. .|+-++
T Consensus 180 ~~F~~K~~~rl~e~~----~~~~tiv~VSHd~~~I~~~C 214 (249)
T COG1134 180 AAFQEKCLERLNELV----EKNKTIVLVSHDLGAIKQYC 214 (249)
T ss_pred HHHHHHHHHHHHHHH----HcCCEEEEEECCHHHHHHhc
Confidence 356888888888753 3458999999985 344333
No 82
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=30.59 E-value=1.9e+02 Score=21.83 Aligned_cols=41 Identities=27% Similarity=0.270 Sum_probs=24.4
Q ss_pred HHHHHHhHHHHHHHHhHhhhcCCCEEEEEec--cHHHHHHHHHhh
Q psy12135 162 LKETIMRVLPYWNENIATEIKQGKKVLVVTH--GTSLRGLVKHIE 204 (212)
Q Consensus 162 ~~~v~~R~~~~~~~~i~~~~~~~~~vliVsH--G~~ir~ll~~l~ 204 (212)
+..+.+-+...+++... ..++.+|.|++| ||.+..++...+
T Consensus 7 ~~~~~~~i~~~~~~~~~--~~p~~~i~v~GHSlGg~lA~l~a~~~ 49 (153)
T cd00741 7 ARSLANLVLPLLKSALA--QYPDYKIHVTGHSLGGALAGLAGLDL 49 (153)
T ss_pred HHHHHHHHHHHHHHHHH--HCCCCeEEEEEcCHHHHHHHHHHHHH
Confidence 34444555555544222 136778999988 677777765554
No 83
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=30.47 E-value=47 Score=27.02 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=21.7
Q ss_pred CHHHHHHhHHHHHHHHhHhhhcCCCEEEEEecc
Q psy12135 161 SLKETIMRVLPYWNENIATEIKQGKKVLVVTHG 193 (212)
Q Consensus 161 S~~~v~~R~~~~~~~~i~~~~~~~~~vliVsHG 193 (212)
|.+++.+|+..|++. |.. .++...||+|+|-
T Consensus 72 ~~~~~~~~~~~fv~~-iR~-~hP~tPIllv~~~ 102 (178)
T PF14606_consen 72 SPEEFRERLDGFVKT-IRE-AHPDTPILLVSPI 102 (178)
T ss_dssp CTTTHHHHHHHHHHH-HHT-T-SSS-EEEEE--
T ss_pred CHHHHHHHHHHHHHH-HHH-hCCCCCEEEEecC
Confidence 556789999999987 443 4788899999963
No 84
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=30.35 E-value=68 Score=27.46 Aligned_cols=14 Identities=36% Similarity=0.748 Sum_probs=11.0
Q ss_pred cCCCEEEEEeccHH
Q psy12135 182 KQGKKVLVVTHGTS 195 (212)
Q Consensus 182 ~~~~~vliVsHG~~ 195 (212)
..|..|+||+||++
T Consensus 45 ~~g~~vvlV~Sga~ 58 (266)
T PRK12314 45 NKGKEVILVSSGAI 58 (266)
T ss_pred HCCCeEEEEeeCcc
Confidence 45678999999854
No 85
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=29.63 E-value=2.2e+02 Score=20.64 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHhHHHHHHHHhHhhhcCCCEEEEEe---ccHHHHHHHHHhhCC
Q psy12135 157 PHTESLKETIMRVLPYWNENIATEIKQGKKVLVVT---HGTSLRGLVKHIERK 206 (212)
Q Consensus 157 p~gES~~~v~~R~~~~~~~~i~~~~~~~~~vliVs---HG~~ir~ll~~l~g~ 206 (212)
+.++|..++.+++...+++ + ..++.|+|.| -|......+..+...
T Consensus 35 ~~~~~~~~~~~~l~~~i~~-~----~~~~~vlil~Dl~ggsp~n~a~~~~~~~ 82 (116)
T PF03610_consen 35 YPDESIEDFEEKLEEAIEE-L----DEGDGVLILTDLGGGSPFNEAARLLLDK 82 (116)
T ss_dssp TTTSCHHHHHHHHHHHHHH-C----CTTSEEEEEESSTTSHHHHHHHHHHCTS
T ss_pred cCCCCHHHHHHHHHHHHHh-c----cCCCcEEEEeeCCCCccchHHHHHhccC
Confidence 4678999999999988865 2 3567899987 566666666665443
No 86
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=28.79 E-value=1.4e+02 Score=24.35 Aligned_cols=43 Identities=23% Similarity=0.275 Sum_probs=27.8
Q ss_pred CCHHHHHHhHHHHHHHHhHhhhcCCCEEEEEec--cHHHHHHHHHhh
Q psy12135 160 ESLKETIMRVLPYWNENIATEIKQGKKVLVVTH--GTSLRGLVKHIE 204 (212)
Q Consensus 160 ES~~~v~~R~~~~~~~~i~~~~~~~~~vliVsH--G~~ir~ll~~l~ 204 (212)
.++..+.+.+...+.+.+. ..++.+|+|++| ||++..++...+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~--~~p~~~i~vtGHSLGGaiA~l~a~~l 149 (229)
T cd00519 105 SAYKSLYNQVLPELKSALK--QYPDYKIIVTGHSLGGALASLLALDL 149 (229)
T ss_pred HHHHHHHHHHHHHHHHHHh--hCCCceEEEEccCHHHHHHHHHHHHH
Confidence 3455666666666666433 246778999999 677777665544
No 87
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=26.83 E-value=57 Score=25.83 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=15.9
Q ss_pred HHhHHHHHHHHhHhhhcCCCEEEEEecc
Q psy12135 166 IMRVLPYWNENIATEIKQGKKVLVVTHG 193 (212)
Q Consensus 166 ~~R~~~~~~~~i~~~~~~~~~vliVsHG 193 (212)
.+++...+.+. . ..+.+|++|||-
T Consensus 163 ~~~~~~~l~~~-~---~~~~tili~sH~ 186 (190)
T TIGR01166 163 REQMLAILRRL-R---AEGMTVVISTHD 186 (190)
T ss_pred HHHHHHHHHHH-H---HcCCEEEEEeec
Confidence 45555566653 2 246799999995
No 88
>KOG2369|consensus
Probab=26.60 E-value=1.4e+02 Score=28.07 Aligned_cols=44 Identities=14% Similarity=0.217 Sum_probs=31.7
Q ss_pred CCCCHHHHHHhHHHHHHHHhHhhhcCCCEEEEEeccHHHHHHHHHh
Q psy12135 158 HTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHI 203 (212)
Q Consensus 158 ~gES~~~v~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ir~ll~~l 203 (212)
+-|-..+...+++..++...+ .+.+|.|+|++|+.=-..+++.+
T Consensus 157 ~~e~rd~yl~kLK~~iE~~~~--~~G~kkVvlisHSMG~l~~lyFl 200 (473)
T KOG2369|consen 157 NSEERDQYLSKLKKKIETMYK--LNGGKKVVLISHSMGGLYVLYFL 200 (473)
T ss_pred ChhHHHHHHHHHHHHHHHHHH--HcCCCceEEEecCCccHHHHHHH
Confidence 466788889999998887543 35669999999976444444443
No 89
>PF02604 PhdYeFM_antitox: Antitoxin Phd_YefM, type II toxin-antitoxin system; InterPro: IPR006442 This entry is represented by Bacteriophage P1, prevent-host-death protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins is characterised by a region of about 55 amino acids toward the N-terminal end of bacterial proteins which are themselves only 85 amino acids, or thereabouts, in length. The best-characterised member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (IPR006440 from INTERPRO) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family. ; PDB: 3DBO_A 2ODK_B 3G5O_D 2A6Q_B 3D55_C 3OEI_E 3CTO_C 3K33_D 3KH2_F 3HS2_C ....
Probab=26.27 E-value=1.3e+02 Score=19.95 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=22.2
Q ss_pred CHHHHHHhHHHHHHHHhHhhhcCCCEEEEEeccHH
Q psy12135 161 SLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTS 195 (212)
Q Consensus 161 S~~~v~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ 195 (212)
|..++.++...+++.. . ..+..|+|.-||..
T Consensus 5 s~~e~r~~~~~~l~~v-~---~~~~pv~It~~g~~ 35 (75)
T PF02604_consen 5 SITEFRNNFSELLDEV-E---EGEEPVIITKNGKP 35 (75)
T ss_dssp EHHHHHHTHHHHHHHH-H---HCT-EEEEEETTEE
T ss_pred cHHHHHHHHHHHHHHH-H---cCCCeEEEEECCCC
Confidence 5789999999988873 2 23445888888863
No 90
>COG1598 Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=26.01 E-value=1.2e+02 Score=20.50 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=20.2
Q ss_pred CCCCCCHHHHHHhHHHHHHHHhHh
Q psy12135 156 FPHTESLKETIMRVLPYWNENIAT 179 (212)
Q Consensus 156 ~p~gES~~~v~~R~~~~~~~~i~~ 179 (212)
...|+|++++.++++.+++-.+..
T Consensus 27 ~s~G~T~eea~~n~~eai~l~~e~ 50 (73)
T COG1598 27 HSQGETLEEALQNAKEAIELHLEA 50 (73)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999876654
No 91
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=25.59 E-value=58 Score=28.30 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=24.0
Q ss_pred CCCCHHHHHHhHHHHHHHHhHhhhcCCCEEEEEeccHHHH
Q psy12135 158 HTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLR 197 (212)
Q Consensus 158 ~gES~~~v~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ir 197 (212)
.+.|+++..+++..-++. .. .-+..|++..|||.|.
T Consensus 190 ~~~sl~~a~~~~~~i~~a-a~---~v~~dii~l~hGGPI~ 225 (268)
T PF09370_consen 190 TALSLEEAAERIQEIFDA-AR---AVNPDIIVLCHGGPIA 225 (268)
T ss_dssp -S--HHHHHHHHHHHHHH-HH---CC-TT-EEEEECTTB-
T ss_pred ccCCHHHHHHHHHHHHHH-HH---HhCCCeEEEEeCCCCC
Confidence 578999999999987765 22 3456799999999876
No 92
>PRK06635 aspartate kinase; Reviewed
Probab=25.33 E-value=90 Score=28.13 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=24.7
Q ss_pred CCCCHHHHHHhHHHHHHHHhHhhhcCCCEEEEEecc--HHHHHHHHHh
Q psy12135 158 HTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHG--TSLRGLVKHI 203 (212)
Q Consensus 158 ~gES~~~v~~R~~~~~~~~i~~~~~~~~~vliVsHG--~~ir~ll~~l 203 (212)
||.++.+. +++..+.+. +......|..++||.|| ++...++...
T Consensus 9 GGs~l~~~-~~~~~~~~~-i~~~~~~g~~~vvV~sg~~~~~~~l~~~~ 54 (404)
T PRK06635 9 GGTSVGDV-ERIKRVAER-VKAEVEAGHQVVVVVSAMGGTTDELLDLA 54 (404)
T ss_pred CCcccCCH-HHHHHHHHH-HHHHHHcCCCEEEEEeCCCCcHHHHHHHH
Confidence 78887653 344444444 22222346678888885 5666665543
No 93
>PRK13696 hypothetical protein; Provisional
Probab=25.20 E-value=60 Score=21.82 Aligned_cols=13 Identities=23% Similarity=0.386 Sum_probs=12.1
Q ss_pred CCCCHHHHHHhHH
Q psy12135 158 HTESLKETIMRVL 170 (212)
Q Consensus 158 ~gES~~~v~~R~~ 170 (212)
+||||.||..|+.
T Consensus 21 ~~~SFSevi~~L~ 33 (62)
T PRK13696 21 GDKSFSEVIRELI 33 (62)
T ss_pred CCCCHHHHHHHHH
Confidence 8999999999987
No 94
>PF08471 Ribonuc_red_2_N: Class II vitamin B12-dependent ribonucleotide reductase; InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=24.68 E-value=97 Score=22.52 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=17.8
Q ss_pred CCCC-CHHHHHHhHHHHHHHHh
Q psy12135 157 PHTE-SLKETIMRVLPYWNENI 177 (212)
Q Consensus 157 p~gE-S~~~v~~R~~~~~~~~i 177 (212)
-|+| |+++|..|+..+|....
T Consensus 46 ~g~E~S~rQv~~Rla~tw~~wG 67 (93)
T PF08471_consen 46 FGGETSVRQVFDRLAGTWTYWG 67 (93)
T ss_pred ccccchHHHHHHHHHHHHHHHH
Confidence 3677 89999999999998754
No 95
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=24.62 E-value=1.2e+02 Score=29.65 Aligned_cols=35 Identities=34% Similarity=0.414 Sum_probs=27.4
Q ss_pred CCCCHHHHHHhHHHHHHHHhHhhhcCCCEEEEEeccH
Q psy12135 158 HTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGT 194 (212)
Q Consensus 158 ~gES~~~v~~R~~~~~~~~i~~~~~~~~~vliVsHG~ 194 (212)
.-|...+...|++..++.+.. .+.++.|+||+|+-
T Consensus 188 ~le~rd~YF~rLK~lIE~ay~--~nggkKVVLV~HSM 222 (642)
T PLN02517 188 NTEVRDQTLSRLKSNIELMVA--TNGGKKVVVVPHSM 222 (642)
T ss_pred chhhhhHHHHHHHHHHHHHHH--HcCCCeEEEEEeCC
Confidence 467888999999998887533 34578999999964
No 96
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=24.59 E-value=76 Score=24.79 Aligned_cols=14 Identities=21% Similarity=0.430 Sum_probs=11.0
Q ss_pred CCCEEEEEeccHHH
Q psy12135 183 QGKKVLVVTHGTSL 196 (212)
Q Consensus 183 ~~~~vliVsHG~~i 196 (212)
.+.+|++|||--..
T Consensus 145 ~~~tii~~sh~~~~ 158 (173)
T cd03246 145 AGATRIVIAHRPET 158 (173)
T ss_pred CCCEEEEEeCCHHH
Confidence 46799999998643
No 97
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=24.24 E-value=77 Score=25.35 Aligned_cols=14 Identities=21% Similarity=0.579 Sum_probs=11.6
Q ss_pred CCCEEEEEeccHHH
Q psy12135 183 QGKKVLVVTHGTSL 196 (212)
Q Consensus 183 ~~~~vliVsHG~~i 196 (212)
.+.+|++|||---.
T Consensus 138 ~g~tvIivSH~~~~ 151 (176)
T cd03238 138 LGNTVILIEHNLDV 151 (176)
T ss_pred CCCEEEEEeCCHHH
Confidence 47899999998754
No 98
>PF01676 Metalloenzyme: Metalloenzyme superfamily; InterPro: IPR006124 This domain unites alkaline phosphatase, N-acetylgalactosamine-4-sulphatase, and cerebroside sulphatase, enzymes with known three-dimensional structures, with phosphopentomutase, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, phosphoglycerol transferase, phosphonate monoesterase, streptomycin-6-phosphate phosphatase, alkaline phosphodiesterase/nucleotide pyrophosphatase PC-1, and several closely related sulphatases. This domain is also related to alkaline phosphatase IPR001952 from INTERPRO []. The most conserved residues are probably involved in metal binding and catalysis.; GO: 0003824 catalytic activity, 0046872 metal ion binding; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3UN5_F 3UN3_B 3M8Y_C 3UO0_B 3UN2_B 3UNY_E ....
Probab=24.16 E-value=1.1e+02 Score=25.79 Aligned_cols=36 Identities=22% Similarity=0.469 Sum_probs=24.5
Q ss_pred CCCHHHHHHhHHHHHHHHhHhhhcCCCEEEEEe--ccHH
Q psy12135 159 TESLKETIMRVLPYWNENIATEIKQGKKVLVVT--HGTS 195 (212)
Q Consensus 159 gES~~~v~~R~~~~~~~~i~~~~~~~~~vliVs--HG~~ 195 (212)
-|-..++.+++-.++.+++.. ....+.+|||| ||+.
T Consensus 160 ~~~~~~~ie~~D~~l~~l~~~-~~~~~~~liiTaDHg~~ 197 (252)
T PF01676_consen 160 PEAYIEAIERIDRFLGRLLEA-LDKEDDLLIITADHGND 197 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHTTEEEEEEESSBST
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhcCCCEEEEECCCCCc
Confidence 355778888888888886543 32455677776 8874
No 99
>PF08665 PglZ: PglZ domain; InterPro: IPR013973 This entry is a member of the Alkaline phosphatase clan.
Probab=23.87 E-value=1e+02 Score=24.47 Aligned_cols=15 Identities=27% Similarity=0.707 Sum_probs=11.3
Q ss_pred cCCCEEEEEe-ccHHH
Q psy12135 182 KQGKKVLVVT-HGTSL 196 (212)
Q Consensus 182 ~~~~~vliVs-HG~~i 196 (212)
..+.+|+|+| ||.+.
T Consensus 161 ~~~~~V~ITsDHG~v~ 176 (181)
T PF08665_consen 161 NAGRRVVITSDHGFVY 176 (181)
T ss_pred hcCceEEEECCCCCEE
Confidence 3477899888 99764
No 100
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=23.67 E-value=72 Score=25.67 Aligned_cols=13 Identities=46% Similarity=0.705 Sum_probs=10.5
Q ss_pred CCCEEEEEeccHH
Q psy12135 183 QGKKVLVVTHGTS 195 (212)
Q Consensus 183 ~~~~vliVsHG~~ 195 (212)
.+.+|++|||--.
T Consensus 186 ~~~tii~~tH~~~ 198 (214)
T TIGR02673 186 RGTTVIVATHDLS 198 (214)
T ss_pred cCCEEEEEeCCHH
Confidence 4679999999854
No 101
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=23.49 E-value=80 Score=23.19 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=25.8
Q ss_pred CCCCHHHHHHhHHHHHHHHhHhhhcCCCEEEEEeccHHHH
Q psy12135 158 HTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLR 197 (212)
Q Consensus 158 ~gES~~~v~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ir 197 (212)
.++++.+...++..++++.. ..+++|||-+++|.-|
T Consensus 51 ~~~~~~~~~~~~~~~i~~~~----~~~~~VlVHC~~G~~R 86 (133)
T PF00782_consen 51 PEEPILEHLDQAVEFIENAI----SEGGKVLVHCKAGLSR 86 (133)
T ss_dssp TTSHGGGGHHHHHHHHHHHH----HTTSEEEEEESSSSSH
T ss_pred CCcchHHHHHHHHHhhhhhh----cccceeEEEeCCCccc
Confidence 35566677788888888742 4678999988776544
No 102
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=23.07 E-value=1.1e+02 Score=30.30 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=18.8
Q ss_pred HHHhHHHHHHHHhHhhhcCCCEEEEEeccHHHHH
Q psy12135 165 TIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRG 198 (212)
Q Consensus 165 v~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ir~ 198 (212)
...++...+.++ ...|..|+|||||++--+
T Consensus 30 ~l~~l~~~i~~l----~~~g~~vilVsSGA~a~G 59 (715)
T TIGR01092 30 RLGSICEQLSEL----NSDGREVILVTSGAVAFG 59 (715)
T ss_pred HHHHHHHHHHHH----HHCCCEEEEEccchHHhc
Confidence 344444444432 245789999999987643
No 103
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=22.88 E-value=1.8e+02 Score=24.49 Aligned_cols=32 Identities=28% Similarity=0.394 Sum_probs=20.5
Q ss_pred HHhHHHHHHHHhHhhhcCCCEEEEEeccHHHHHHH
Q psy12135 166 IMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLV 200 (212)
Q Consensus 166 ~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ir~ll 200 (212)
.+.+...+.++ . ...|.+|++|||--.+....
T Consensus 178 ~~~V~~ll~~~-~--~~~g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 178 AKEVLELLREL-N--KERGKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHHHHH-H--HhcCCEEEEEcCCHHHHHhC
Confidence 34445555552 2 13478999999998876644
No 104
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=22.49 E-value=54 Score=28.27 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=20.1
Q ss_pred CCCCHHHHHHhHHHHHHHHhHhhhcCCCEEEEEeccHH
Q psy12135 158 HTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTS 195 (212)
Q Consensus 158 ~gES~~~v~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ 195 (212)
|-++-.+-++++..++.+.+.. ..+++.+++++||+.
T Consensus 116 g~~~~~~D~~~va~aL~~~~~~-~~~~~a~vlmGHGt~ 152 (262)
T PF06180_consen 116 GQENSPEDYEAVAEALAEEFPK-KRKDEAVVLMGHGTP 152 (262)
T ss_dssp ----SHHHHHHHHHHHHCCS-T-T-TTEEEEEEE---S
T ss_pred cccCChHHHHHHHHHHHHhccc-cCCCCEEEEEeCCCC
Confidence 4445555667888888775432 246788999999973
No 105
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=22.30 E-value=76 Score=25.60 Aligned_cols=13 Identities=46% Similarity=0.721 Sum_probs=10.6
Q ss_pred CCCEEEEEeccHH
Q psy12135 183 QGKKVLVVTHGTS 195 (212)
Q Consensus 183 ~~~~vliVsHG~~ 195 (212)
.+.+|++|||--.
T Consensus 187 ~~~tii~vsH~~~ 199 (216)
T TIGR00960 187 RGTTVLVATHDIN 199 (216)
T ss_pred CCCEEEEEeCCHH
Confidence 4679999999854
No 106
>TIGR01552 phd_fam prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family.
Probab=21.69 E-value=2.1e+02 Score=17.53 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=22.2
Q ss_pred CHHHHHHhHHHHHHHHhHhhhcCCCEEEEEeccHH
Q psy12135 161 SLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTS 195 (212)
Q Consensus 161 S~~~v~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ 195 (212)
|..++.++....+++. . .++.|+|.-||..
T Consensus 3 ~~te~r~~~~~~l~~v-~----~~~pv~It~~g~~ 32 (52)
T TIGR01552 3 SLSEAKNKLGELLKRV-R----DGEPVTITKRGRP 32 (52)
T ss_pred CHHHHHHHHHHHHHHH-H----CCCCEEEEECCcc
Confidence 5778888888888763 2 2348888889874
No 107
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=21.44 E-value=82 Score=25.29 Aligned_cols=14 Identities=36% Similarity=0.427 Sum_probs=10.7
Q ss_pred CCCEEEEEeccHHH
Q psy12135 183 QGKKVLVVTHGTSL 196 (212)
Q Consensus 183 ~~~~vliVsHG~~i 196 (212)
.+.+|++|||--..
T Consensus 178 ~~~tiii~sh~~~~ 191 (204)
T PRK13538 178 QGGMVILTTHQDLP 191 (204)
T ss_pred CCCEEEEEecChhh
Confidence 46799999997543
No 108
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=21.37 E-value=83 Score=25.17 Aligned_cols=26 Identities=42% Similarity=0.469 Sum_probs=16.1
Q ss_pred HHhHHHHHHHHhHhhhcCCCEEEEEeccHH
Q psy12135 166 IMRVLPYWNENIATEIKQGKKVLVVTHGTS 195 (212)
Q Consensus 166 ~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ 195 (212)
.+.+...+.+. . ..+.+|++|||--.
T Consensus 162 ~~~l~~~l~~~-~---~~~~tii~~sH~~~ 187 (205)
T cd03226 162 MERVGELIREL-A---AQGKAVIVITHDYE 187 (205)
T ss_pred HHHHHHHHHHH-H---HCCCEEEEEeCCHH
Confidence 34444455542 2 24679999999854
No 109
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=21.26 E-value=79 Score=22.83 Aligned_cols=25 Identities=28% Similarity=0.615 Sum_probs=19.4
Q ss_pred CCCEEEEE----eccHHHHHHHHHhhCCC
Q psy12135 183 QGKKVLVV----THGTSLRGLVKHIERKS 207 (212)
Q Consensus 183 ~~~~vliV----sHG~~ir~ll~~l~g~~ 207 (212)
.|++|||| +-|++++.++..|....
T Consensus 87 ~gk~vliVDDvi~tG~Tl~~~~~~L~~~g 115 (125)
T PF00156_consen 87 KGKRVLIVDDVIDTGGTLKEAIELLKEAG 115 (125)
T ss_dssp TTSEEEEEEEEESSSHHHHHHHHHHHHTT
T ss_pred cceeEEEEeeeEcccHHHHHHHHHHHhCC
Confidence 56788865 79999999998887544
No 110
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=21.03 E-value=90 Score=25.01 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=15.6
Q ss_pred HHhHHHHHHHHhHhhhcCCCEEEEEeccHH
Q psy12135 166 IMRVLPYWNENIATEIKQGKKVLVVTHGTS 195 (212)
Q Consensus 166 ~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ 195 (212)
.+.+...+.+. . ..+.+|+++||--.
T Consensus 170 ~~~~~~~l~~~-~---~~~~tvi~~sH~~~ 195 (211)
T cd03225 170 RRELLELLKKL-K---AEGKTIIIVTHDLD 195 (211)
T ss_pred HHHHHHHHHHH-H---HcCCEEEEEeCCHH
Confidence 33444445542 2 23679999999754
No 111
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=20.93 E-value=93 Score=24.85 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=16.2
Q ss_pred HHhHHHHHHHHhHhhhcCCCEEEEEeccHH
Q psy12135 166 IMRVLPYWNENIATEIKQGKKVLVVTHGTS 195 (212)
Q Consensus 166 ~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ 195 (212)
.+.+...+.+. . ..+.+|+++||--.
T Consensus 163 ~~~l~~~l~~~-~---~~~~tiii~sh~~~ 188 (200)
T PRK13540 163 LLTIITKIQEH-R---AKGGAVLLTSHQDL 188 (200)
T ss_pred HHHHHHHHHHH-H---HcCCEEEEEeCCch
Confidence 44455555552 2 24679999999754
No 112
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=20.75 E-value=86 Score=24.33 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=16.4
Q ss_pred HHhHHHHHHHHhHhhhcCCCEEEEEeccHH
Q psy12135 166 IMRVLPYWNENIATEIKQGKKVLVVTHGTS 195 (212)
Q Consensus 166 ~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ 195 (212)
.+.+...+.++ . ..+.+|+++||--.
T Consensus 118 ~~~l~~~l~~~-~---~~~~tiii~sh~~~ 143 (163)
T cd03216 118 VERLFKVIRRL-R---AQGVAVIFISHRLD 143 (163)
T ss_pred HHHHHHHHHHH-H---HCCCEEEEEeCCHH
Confidence 34444555552 2 24679999999865
No 113
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=20.67 E-value=3.3e+02 Score=24.17 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=27.5
Q ss_pred HHHHhHHHHHHHHhHhhhcCCCEEEEEeccHHHHHHHHHhhCCCCC
Q psy12135 164 ETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLR 209 (212)
Q Consensus 164 ~v~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ir~ll~~l~g~~~~ 209 (212)
++-.=...++.+.+ .+++ ++-|++|.++.+++.++.-.+..
T Consensus 99 ~lg~aaA~~l~~~l----~~gd-vigV~wGrTv~a~~~~l~~~~~~ 139 (321)
T COG2390 99 RLGRAAAQYLESLL----KPGD-VIGVGWGRTLSAVVDNLPPAPLR 139 (321)
T ss_pred HHHHHHHHHHHHhC----CCCC-EEEEeccHHHHHHHHhcCcCccC
Confidence 34444444555533 3454 99999999999999988766543
No 114
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=20.65 E-value=93 Score=25.01 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=16.2
Q ss_pred HHhHHHHHHHHhHhhhcCCCEEEEEeccHH
Q psy12135 166 IMRVLPYWNENIATEIKQGKKVLVVTHGTS 195 (212)
Q Consensus 166 ~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ 195 (212)
.+++...+.+. . ..+.+|+++||--.
T Consensus 168 ~~~l~~~l~~~-~---~~~~tvi~~sH~~~ 193 (213)
T cd03235 168 QEDIYELLREL-R---REGMTILVVTHDLG 193 (213)
T ss_pred HHHHHHHHHHH-H---hcCCEEEEEeCCHH
Confidence 34444445542 2 24679999999864
No 115
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=20.48 E-value=85 Score=25.18 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=16.1
Q ss_pred HHhHHHHHHHHhHhhhcCCCEEEEEeccHH
Q psy12135 166 IMRVLPYWNENIATEIKQGKKVLVVTHGTS 195 (212)
Q Consensus 166 ~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ 195 (212)
.+++...+.+. . ..+.+|++|||--.
T Consensus 172 ~~~~~~~l~~~-~---~~~~tiiivtH~~~ 197 (214)
T cd03292 172 TWEIMNLLKKI-N---KAGTTVVVATHAKE 197 (214)
T ss_pred HHHHHHHHHHH-H---HcCCEEEEEeCCHH
Confidence 34444555552 2 24679999999754
No 116
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=20.22 E-value=2.4e+02 Score=22.32 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHhHHHHHHHHhHhhhcCCCEEEEEeccHHHHHHHHH
Q psy12135 157 PHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKH 202 (212)
Q Consensus 157 p~gES~~~v~~R~~~~~~~~i~~~~~~~~~vliVsHG~~ir~ll~~ 202 (212)
+.|||-.++++|...-+. ..+..|.|||--..++.....
T Consensus 74 ~~~~tAD~~Ie~~v~~~~-------~~~~~v~VVTSD~~iq~~~~~ 112 (166)
T PF05991_consen 74 KEGETADDYIERLVRELK-------NRPRQVTVVTSDREIQRAARG 112 (166)
T ss_pred CCCCCHHHHHHHHHHHhc-------cCCCeEEEEeCCHHHHHHHhh
Confidence 579999999999654221 225789999999888876643
No 117
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=20.12 E-value=83 Score=25.21 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=15.1
Q ss_pred HHhHHHHHHHHhHhhhcCCCEEEEEeccH
Q psy12135 166 IMRVLPYWNENIATEIKQGKKVLVVTHGT 194 (212)
Q Consensus 166 ~~R~~~~~~~~i~~~~~~~~~vliVsHG~ 194 (212)
.+.+...+.+. . ..+.++++|||-.
T Consensus 161 ~~~l~~~l~~~-~---~~g~tiii~sH~~ 185 (201)
T cd03231 161 VARFAEAMAGH-C---ARGGMVVLTTHQD 185 (201)
T ss_pred HHHHHHHHHHH-H---hCCCEEEEEecCc
Confidence 34444455442 2 3477999999953
Done!