RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12135
(212 letters)
>gnl|CDD|184516 PRK14115, gpmA, phosphoglyceromutase; Provisional.
Length = 247
Score = 123 bits (311), Expect = 6e-35
Identities = 48/90 (53%), Positives = 63/90 (70%), Gaps = 4/90 (4%)
Query: 115 QVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 174
QV+IWRRSYDV PP + KD + Y +P + E++ P TESLK+TI RVLPYWN
Sbjct: 108 QVKIWRRSYDVPPPALEKDDERYP--GHDPRYA--KLPEEELPLTESLKDTIARVLPYWN 163
Query: 175 ENIATEIKQGKKVLVVTHGTSLRGLVKHIE 204
E IA ++K GK+VL+ HG SLR LVK+++
Sbjct: 164 ETIAPQLKSGKRVLIAAHGNSLRALVKYLD 193
Score = 114 bits (287), Expect = 3e-31
Identities = 45/85 (52%), Positives = 58/85 (68%), Gaps = 4/85 (4%)
Query: 3 VQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNE 62
V+IWRRSYDV PP + KD + Y +P + E++ P TESLK+TI RVLPYWNE
Sbjct: 109 VKIWRRSYDVPPPALEKDDERYP--GHDPRYA--KLPEEELPLTESLKDTIARVLPYWNE 164
Query: 63 NIATEIKQGKKVLVVTHGTSLRGLI 87
IA ++K GK+VL+ HG SLR L+
Sbjct: 165 TIAPQLKSGKRVLIAAHGNSLRALV 189
>gnl|CDD|213596 TIGR01258, pgm_1, phosphoglycerate mutase, BPG-dependent, family 1.
Most members of this family are phosphoglycerate mutase
(EC 5.4.2.1). This enzyme interconverts
2-phosphoglycerate and 3-phosphoglycerate. The enzyme is
transiently phosphorylated on an active site histidine
by 2,3-diphosphoglyerate, which is both substrate and
product. Some members of this family have are
phosphoglycerate mutase as a minor activity and act
primarily as a bisphoglycerate mutase, interconverting
2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC
5.4.2.4). This model is designated as a subfamily for
this reason. The second and third paralogs in S.
cerevisiae are somewhat divergent and apparently
inactive (see PUBMED:9544241) but are also part of this
subfamily phylogenetically.
Length = 245
Score = 117 bits (296), Expect = 8e-33
Identities = 46/93 (49%), Positives = 60/93 (64%), Gaps = 4/93 (4%)
Query: 115 QVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 174
QV IWRRS+DV PPP+ + ++P + + P TESLK+TI RVLPYWN
Sbjct: 108 QVNIWRRSFDVPPPPIDESDPRSPH--NDPRYA--HLDPKVLPLTESLKDTIARVLPYWN 163
Query: 175 ENIATEIKQGKKVLVVTHGTSLRGLVKHIERKS 207
+ IA ++ GK+VL+V HG SLR LVKH+E S
Sbjct: 164 DEIAPDLLSGKRVLIVAHGNSLRALVKHLEGIS 196
Score = 106 bits (267), Expect = 2e-28
Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 4/85 (4%)
Query: 3 VQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNE 62
V IWRRS+DV PPP+ + +P + + P TESLK+TI RVLPYWN+
Sbjct: 109 VNIWRRSFDVPPPPIDESDPRSPH--NDPRYA--HLDPKVLPLTESLKDTIARVLPYWND 164
Query: 63 NIATEIKQGKKVLVVTHGTSLRGLI 87
IA ++ GK+VL+V HG SLR L+
Sbjct: 165 EIAPDLLSGKRVLIVAHGNSLRALV 189
>gnl|CDD|240280 PTZ00123, PTZ00123, phosphoglycerate mutase like-protein;
Provisional.
Length = 236
Score = 114 bits (287), Expect = 2e-31
Identities = 47/93 (50%), Positives = 65/93 (69%), Gaps = 4/93 (4%)
Query: 115 QVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 174
QV+IWRRSYD+ PPP+ K + Y ++P +K +D P+TE LK+T+ RVLPYW
Sbjct: 96 QVKIWRRSYDIPPPPLEKSDERYPG--NDPVYK--DIPKDALPNTECLKDTVERVLPYWE 151
Query: 175 ENIATEIKQGKKVLVVTHGTSLRGLVKHIERKS 207
++IA +I GKKVLV HG SLR LVK++++ S
Sbjct: 152 DHIAPDILAGKKVLVAAHGNSLRALVKYLDKMS 184
Score = 104 bits (262), Expect = 9e-28
Identities = 43/85 (50%), Positives = 57/85 (67%), Gaps = 4/85 (4%)
Query: 3 VQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNE 62
V+IWRRSYD+ PPP+ K + Y +P +K +D P+TE LK+T+ RVLPYW +
Sbjct: 97 VKIWRRSYDIPPPPLEKSDERYPG--NDPVYK--DIPKDALPNTECLKDTVERVLPYWED 152
Query: 63 NIATEIKQGKKVLVVTHGTSLRGLI 87
+IA +I GKKVLV HG SLR L+
Sbjct: 153 HIAPDILAGKKVLVAAHGNSLRALV 177
>gnl|CDD|223661 COG0588, GpmA, Phosphoglycerate mutase 1 [Carbohydrate transport
and metabolism].
Length = 230
Score = 111 bits (281), Expect = 1e-30
Identities = 43/96 (44%), Positives = 60/96 (62%), Gaps = 4/96 (4%)
Query: 115 QVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 174
QV IWRRSYD+ PP + KD + + + + + P TESLK+T+ RVLPYW
Sbjct: 109 QVLIWRRSYDIPPPKLEKDDERSP----HRDRRYAHLDIGGLPLTESLKDTVERVLPYWE 164
Query: 175 ENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLRE 210
++IA +K GK VL+V HG SLR L+K++E S +
Sbjct: 165 DDIAPNLKSGKNVLIVAHGNSLRALIKYLEGISDED 200
Score = 100 bits (252), Expect = 3e-26
Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 4/85 (4%)
Query: 3 VQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNE 62
V IWRRSYD+ PP + KD + + + + + P TESLK+T+ RVLPYW +
Sbjct: 110 VLIWRRSYDIPPPKLEKDDERSP----HRDRRYAHLDIGGLPLTESLKDTVERVLPYWED 165
Query: 63 NIATEIKQGKKVLVVTHGTSLRGLI 87
+IA +K GK VL+V HG SLR LI
Sbjct: 166 DIAPNLKSGKNVLIVAHGNSLRALI 190
>gnl|CDD|184519 PRK14120, gpmA, phosphoglyceromutase; Provisional.
Length = 249
Score = 99.3 bits (248), Expect = 1e-25
Identities = 40/90 (44%), Positives = 55/90 (61%), Gaps = 6/90 (6%)
Query: 115 QVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 174
Q +WRRSYD PPP+ +Y QD ++P + G P TE LK+ + R LPYW
Sbjct: 112 QFMLWRRSYDTPPPPIEDGSEYSQD--NDPRYADLGVG----PRTECLKDVVARFLPYWE 165
Query: 175 ENIATEIKQGKKVLVVTHGTSLRGLVKHIE 204
++I ++K GK VL+ HG SLR LVKH++
Sbjct: 166 DDIVPDLKAGKTVLIAAHGNSLRALVKHLD 195
Score = 88.6 bits (220), Expect = 1e-21
Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
Query: 4 QIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNEN 63
+WRRSYD PPP+ +Y QD +P + G P TE LK+ + R LPYW ++
Sbjct: 114 MLWRRSYDTPPPPIEDGSEYSQD--NDPRYADLGVG----PRTECLKDVVARFLPYWEDD 167
Query: 64 IATEIKQGKKVLVVTHGTSLRGLI 87
I ++K GK VL+ HG SLR L+
Sbjct: 168 IVPDLKAGKTVLIAAHGNSLRALV 191
>gnl|CDD|184517 PRK14117, gpmA, phosphoglyceromutase; Provisional.
Length = 230
Score = 93.9 bits (233), Expect = 1e-23
Identities = 52/127 (40%), Positives = 68/127 (53%), Gaps = 11/127 (8%)
Query: 88 LKVHVGRPWGLQSHVF--LLGINN-----NFARFQVQIWRRSYDVLPPPMTKDHKYYQDI 140
L V V + W L + L G N F QV IWRRSYDVLPP M KD +Y
Sbjct: 75 LWVPVEKSWRLNERHYGGLTGKNKAEAAEQFGDEQVHIWRRSYDVLPPAMAKDDEYS--- 131
Query: 141 ISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLV 200
++ + + ++ P E+LK T+ R LP+W + IA +K GK V V HG S+R LV
Sbjct: 132 -AHTDRRYASLDDSVIPDAENLKVTLERALPFWEDKIAPALKDGKNVFVGAHGNSIRALV 190
Query: 201 KHIERKS 207
KHI+ S
Sbjct: 191 KHIKGLS 197
Score = 81.2 bits (200), Expect = 6e-19
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 3 VQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNE 62
V IWRRSYDVLPP M KD +Y + + + ++ P E+LK T+ R LP+W +
Sbjct: 110 VHIWRRSYDVLPPAMAKDDEYS----AHTDRRYASLDDSVIPDAENLKVTLERALPFWED 165
Query: 63 NIATEIKQGKKVLVVTHGTSLRGLI 87
IA +K GK V V HG S+R L+
Sbjct: 166 KIAPALKDGKNVFVGAHGNSIRALV 190
>gnl|CDD|184518 PRK14119, gpmA, phosphoglyceromutase; Provisional.
Length = 228
Score = 88.8 bits (220), Expect = 1e-21
Identities = 43/111 (38%), Positives = 68/111 (61%), Gaps = 13/111 (11%)
Query: 104 LLGINNNFARF-----QVQIWRRSYDVLPPPMTKDHK--YYQDIISNPNFKIDGPNEDQF 156
L G+N + AR QV IWRRSYDV PP T++ + Y D + + ++
Sbjct: 93 LQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREAYLAD------RRYNHLDKRMM 146
Query: 157 PHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKS 207
P++ESLK+T++RV+P+W ++I+ + G+ VLV HG S+R L+K++E S
Sbjct: 147 PYSESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRALIKYLEDVS 197
Score = 78.8 bits (194), Expect = 5e-18
Identities = 35/87 (40%), Positives = 55/87 (63%), Gaps = 8/87 (9%)
Query: 3 VQIWRRSYDVLPPPMTKDHK--YYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYW 60
V IWRRSYDV PP T++ + Y D + + ++ P++ESLK+T++RV+P+W
Sbjct: 110 VHIWRRSYDVKPPAETEEQREAYLAD------RRYNHLDKRMMPYSESLKDTLVRVIPFW 163
Query: 61 NENIATEIKQGKKVLVVTHGTSLRGLI 87
++I+ + G+ VLV HG S+R LI
Sbjct: 164 TDHISQYLLDGQTVLVSAHGNSIRALI 190
>gnl|CDD|172608 PRK14118, gpmA, phosphoglyceromutase; Provisional.
Length = 227
Score = 83.5 bits (206), Expect = 9e-20
Identities = 40/90 (44%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 115 QVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 174
QV IWRRSYD LPP + ++ + + D P E+LK T+ RVLP+W
Sbjct: 108 QVHIWRRSYDTLPPDLDPQDPNS----AHNDRRYAHLPADVVPDAENLKVTLERVLPFWE 163
Query: 175 ENIATEIKQGKKVLVVTHGTSLRGLVKHIE 204
+ IA + GK+VLV HG SLR L KHIE
Sbjct: 164 DQIAPALLSGKRVLVAAHGNSLRALAKHIE 193
Score = 71.9 bits (176), Expect = 2e-15
Identities = 35/84 (41%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 3 VQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNE 62
V IWRRSYD LPP + + + + D P E+LK T+ RVLP+W +
Sbjct: 109 VHIWRRSYDTLPPDLDPQDPNS----AHNDRRYAHLPADVVPDAENLKVTLERVLPFWED 164
Query: 63 NIATEIKQGKKVLVVTHGTSLRGL 86
IA + GK+VLV HG SLR L
Sbjct: 165 QIAPALLSGKRVLVAAHGNSLRAL 188
>gnl|CDD|172606 PRK14116, gpmA, phosphoglyceromutase; Provisional.
Length = 228
Score = 79.6 bits (196), Expect = 3e-18
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 115 QVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 174
QV IWRRSYDVLPP + D + + + P P E+LK T+ RV+P+W
Sbjct: 109 QVHIWRRSYDVLPPLLDADDEGSA--AKDRRYANLDPR--IIPGGENLKVTLERVIPFWE 164
Query: 175 ENIATEIKQGKKVLVVTHGTSLRGLVKHIERKS 207
++IA ++ GK V++ HG SLR L K+IE S
Sbjct: 165 DHIAPDLLDGKNVIIAAHGNSLRALTKYIENIS 197
Score = 69.2 bits (169), Expect = 2e-14
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 3 VQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNE 62
V IWRRSYDVLPP + D + + + P P E+LK T+ RV+P+W +
Sbjct: 110 VHIWRRSYDVLPPLLDADDEGSA--AKDRRYANLDPR--IIPGGENLKVTLERVIPFWED 165
Query: 63 NIATEIKQGKKVLVVTHGTSLRGL 86
+IA ++ GK V++ HG SLR L
Sbjct: 166 HIAPDLLDGKNVIIAAHGNSLRAL 189
>gnl|CDD|167205 PRK01295, PRK01295, phosphoglyceromutase; Provisional.
Length = 206
Score = 70.9 bits (174), Expect = 3e-15
Identities = 39/109 (35%), Positives = 51/109 (46%), Gaps = 34/109 (31%)
Query: 104 LLGINNNFARF-----QVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPH 158
L G+N + AR QV IWRRSYDV PP
Sbjct: 94 LSGLNKDDARAKWGEEQVHIWRRSYDVPPP-----------------------------G 124
Query: 159 TESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKS 207
ESLK+T RVLPY+ + I + +G++VLV HG SLR LV ++ +
Sbjct: 125 GESLKDTGARVLPYYLQEILPRVLRGERVLVAAHGNSLRALVMVLDGLT 173
Score = 65.5 bits (160), Expect = 3e-13
Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 29/86 (33%)
Query: 3 VQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNE 62
V IWRRSYDV PP ESLK+T RVLPY+ +
Sbjct: 111 VHIWRRSYDVPPP-----------------------------GGESLKDTGARVLPYYLQ 141
Query: 63 NIATEIKQGKKVLVVTHGTSLRGLIL 88
I + +G++VLV HG SLR L++
Sbjct: 142 EILPRVLRGERVLVAAHGNSLRALVM 167
>gnl|CDD|234902 PRK01112, PRK01112, phosphoglyceromutase; Provisional.
Length = 228
Score = 64.7 bits (158), Expect = 8e-13
Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 29/100 (29%)
Query: 111 FARFQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVL 170
F QV++WRRSY PP ESL++T R L
Sbjct: 129 FGEEQVKLWRRSYKTAPP-----------------------------QGESLEDTGQRTL 159
Query: 171 PYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLRE 210
PY+ I ++QGK V V HG SLR L+ +E+ S E
Sbjct: 160 PYFQNRILPHLQQGKNVFVSAHGNSLRSLIMDLEKLSEEE 199
Score = 62.0 bits (151), Expect = 6e-12
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 29/88 (32%)
Query: 3 VQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNE 62
V++WRRSY PP ESL++T R LPY+
Sbjct: 134 VKLWRRSYKTAPP-----------------------------QGESLEDTGQRTLPYFQN 164
Query: 63 NIATEIKQGKKVLVVTHGTSLRGLILKV 90
I ++QGK V V HG SLR LI+ +
Sbjct: 165 RILPHLQQGKNVFVSAHGNSLRSLIMDL 192
>gnl|CDD|214859 smart00855, PGAM, Phosphoglycerate mutase family. Phosphoglycerate
mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are
structurally related enzymes that catalyse reactions
involving the transfer of phospho groups between the
three carbon atoms of phosphoglycerate... Both enzymes
can catalyse three different reactions with different
specificities, the isomerization of 2-phosphoglycerate
(2-PGA) to 3-phosphoglycerate (3-PGA) with
2,3-diphosphoglycerate (2,3-DPG) as the primer of the
reaction, the synthesis of 2,3-DPG from 1,3-DPG with
3-PGA as a primer and the degradation of 2,3-DPG to
3-PGA (phosphatase activity). In mammals, PGAM is a
dimeric protein with two isoforms, the M (muscle) and B
(brain) forms. In yeast, PGAM is a tetrameric protein.
Length = 158
Score = 54.0 bits (130), Expect = 2e-09
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 17 MTKDH--KYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKV 74
+T D Y + P P ESL + + RV P +E IAT G+ V
Sbjct: 87 LTWDEIAAKYPEEYLAAWRDPYDPAPPAPPGGESLADLVERVEPALDELIATADASGQNV 146
Query: 75 LVVTHGTSLRGL 86
L+V+HG +R L
Sbjct: 147 LIVSHGGVIRAL 158
Score = 54.0 bits (130), Expect = 2e-09
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 150 GPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGL 199
P P ESL + + RV P +E IAT G+ VL+V+HG +R L
Sbjct: 109 DPAPPAPPGGESLADLVERVEPALDELIATADASGQNVLIVSHGGVIRAL 158
>gnl|CDD|132716 cd07040, HP, Histidine phosphatase domain found in a functionally
diverse set of proteins, mostly phosphatases; contains a
His residue which is phosphorylated during the reaction.
Catalytic domain of a functionally diverse set of
proteins, most of which are phosphatases. The conserved
catalytic core of this domain contains a His residue
which is phosphorylated in the reaction. This set of
proteins includes cofactor-dependent and
cofactor-independent phosphoglycerate mutases (dPGM, and
BPGM respectively), fructose-2,6-bisphosphatase
(F26BP)ase, Sts-1, SixA, histidine acid phosphatases,
phytases, and related proteins. Functions include roles
in metabolism, signaling, or regulation, for example
F26BPase affects glycolysis and gluconeogenesis through
controlling the concentration of F26BP; BPGM controls
the concentration of 2,3-BPG (the main allosteric
effector of hemoglobin in human blood cells); human
Sts-1 is a T-cell regulator; Escherichia coli Six A
participates in the ArcB-dependent His-to-Asp
phosphorelay signaling system; phytases scavenge
phosphate from extracellular sources. Deficiency and
mutation in many of the human members result in disease,
for example erythrocyte BPGM deficiency is a disease
associated with a decrease in the concentration of
2,3-BPG. Clinical applications include the use of
prostatic acid phosphatase (PAP) as a serum marker for
prostate cancer. Agricultural applications include the
addition of phytases to animal feed.
Length = 153
Score = 48.2 bits (115), Expect = 2e-07
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 168 RVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLREPV 212
RVL E +A + GK VL+V+HG ++R L+ + S E +
Sbjct: 83 RVLNALLELLARHLLDGKNVLIVSHGGTIRALLAALLGLSDEEIL 127
Score = 43.2 bits (102), Expect = 1e-05
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 55 RVLPYWNENIATEIKQGKKVLVVTHGTSLRGLI 87
RVL E +A + GK VL+V+HG ++R L+
Sbjct: 83 RVLNALLELLARHLLDGKNVLIVSHGGTIRALL 115
>gnl|CDD|132718 cd07067, HP_PGM_like, Histidine phosphatase domain found in
phosphoglycerate mutases and related proteins, mostly
phosphatases; contains a His residue which is
phosphorylated during the reaction. Subgroup of the
catalytic domain of a functionally diverse set of
proteins, most of which are phosphatases. The conserved
catalytic core of this domain contains a His residue
which is phosphorylated in the reaction. This subgroup
contains cofactor-dependent and cofactor-independent
phosphoglycerate mutases (dPGM, and BPGM respectively),
fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and
related proteins. Functions include roles in metabolism,
signaling, or regulation, for example, F26BPase affects
glycolysis and gluconeogenesis through controlling the
concentration of F26BP; BPGM controls the concentration
of 2,3-BPG (the main allosteric effector of hemoglobin
in human blood cells); human Sts-1 is a T-cell
regulator; Escherichia coli Six A participates in the
ArcB-dependent His-to-Asp phosphorelay signaling system.
Deficiency and mutation in many of the human members
result in disease, for example erythrocyte BPGM
deficiency is a disease associated with a decrease in
the concentration of 2,3-BPG.
Length = 153
Score = 47.7 bits (114), Expect = 4e-07
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 159 TESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLRE 210
L+E RVLP E IA GK VL+V+HG LR L+ ++ S +
Sbjct: 78 DPRLREA--RVLPALEELIAPH--DGKNVLIVSHGGVLRALLAYLLGLSDED 125
Score = 41.2 bits (97), Expect = 8e-05
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 46 TESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLI 87
L+E RVLP E IA GK VL+V+HG LR L+
Sbjct: 78 DPRLREA--RVLPALEELIAPH--DGKNVLIVSHGGVLRALL 115
>gnl|CDD|215845 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch
1). The histidine phosphatase superfamily is so named
because catalysis centres on a conserved His residue
that is transiently phosphorylated during the catalytic
cycle. Other conserved residues contribute to a
'phosphate pocket' and interact with the phospho group
of substrate before, during and after its transfer to
the His residue. Structure and sequence analyses show
that different families contribute different additional
residues to the 'phosphate pocket' and, more
surprisingly, differ in the position, in sequence and in
three dimensions, of a catalytically essential acidic
residue. The superfamily may be divided into two main
branches. The larger branch 1 contains a wide variety of
catalytic functions, the best known being fructose
2,6-bisphosphatase (found in a bifunctional protein with
2-phosphofructokinase) and cofactor-dependent
phosphoglycerate mutase. The latter is an unusual
example of a mutase activity in the superfamily: the
vast majority of members appear to be phosphatases. The
bacterial regulatory protein phosphatase SixA is also in
branch 1 and has a minimal, and possible ancestral-like
structure, lacking the large domain insertions that
contribute to binding of small molecules in branch 1
members.
Length = 154
Score = 43.6 bits (103), Expect = 1e-05
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 35 IDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGL 86
++ P + + P ESL + RV E +A G VL+V+HG +R L
Sbjct: 105 LEDPADFRPPGGESLADVYERVEAALEELLAK--HPGGNVLIVSHGGVIRAL 154
Score = 43.6 bits (103), Expect = 1e-05
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 148 IDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGL 199
++ P + + P ESL + RV E +A G VL+V+HG +R L
Sbjct: 105 LEDPADFRPPGGESLADVYERVEAALEELLAK--HPGGNVLIVSHGGVIRAL 154
>gnl|CDD|223483 COG0406, phoE, Broad specificity phosphatase PhoE and related
phosphatases [General function prediction only].
Length = 208
Score = 40.2 bits (94), Expect = 3e-04
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 149 DGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSL 208
P P ESL + RV+ E + G VLVV+HG +R L+ ++ L
Sbjct: 112 ADPYLAPPPGGESLADVSKRVVAALAE-LLRS-PPGNNVLVVSHGGVIRALLAYLLGLDL 169
Query: 209 REP 211
E
Sbjct: 170 EEL 172
Score = 38.2 bits (89), Expect = 0.001
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 20 DHKYYQDIITNPN----FKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVL 75
+ ++ P + P P ESL + RV+ E + G VL
Sbjct: 92 EGLTIDELAEEPPEELAAWLADPYLAPPPGGESLADVSKRVVAALAE-LLRS-PPGNNVL 149
Query: 76 VVTHGTSLRGLI 87
VV+HG +R L+
Sbjct: 150 VVSHGGVIRALL 161
>gnl|CDD|234131 TIGR03162, ribazole_cobC, alpha-ribazole phosphatase. Members of
this protein family include the known CobC protein of
Salmonella and Eschichia coli species, and homologous
proteins found in cobalamin biosynthesis regions in
other bacteria. This protein is alpha-ribazole
phosphatase (EC 3.1.3.73) and, like many phosphatases,
can be closely related in sequence to other phosphatases
with different functions. Close homologs excluded from
this model include proteins with duplications, so this
model is built in -g mode to suppress hits to those
proteins [Biosynthesis of cofactors, prosthetic groups,
and carriers, Heme, porphyrin, and cobalamin].
Length = 177
Score = 36.1 bits (84), Expect = 0.005
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 43 FPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILKVH 91
P ES + RV + E + +G VL+VTHG +R L+ +
Sbjct: 111 PPGGESFADFYQRVSEFLEE-LLKA-HEGDNVLIVTHGGVIRALLAHLL 157
Score = 35.3 bits (82), Expect = 0.010
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 156 FPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHI 203
P ES + RV + E + +G VL+VTHG +R L+ H+
Sbjct: 111 PPGGESFADFYQRVSEFLEE-LLKA-HEGDNVLIVTHGGVIRALLAHL 156
>gnl|CDD|180903 PRK07238, PRK07238, bifunctional RNase H/acid phosphatase;
Provisional.
Length = 372
Score = 31.9 bits (73), Expect = 0.20
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 157 PHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKH 202
P ES RV + IA G VLVV+H T ++ L++
Sbjct: 287 PGGESFDAVARRVRRARDRLIAEY--PGATVLVVSHVTPIKTLLRL 330
Score = 29.9 bits (68), Expect = 0.79
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 44 PHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLI 87
P ES RV + IA G VLVV+H T ++ L+
Sbjct: 287 PGGESFDAVARRVRRARDRLIAEY--PGATVLVVSHVTPIKTLL 328
>gnl|CDD|215757 pfam00156, Pribosyltran, Phosphoribosyl transferase domain. This
family includes a range of diverse phosphoribosyl
transferase enzymes. This family includes: Adenine
phosphoribosyltransferase EC:2.4.2.7.
Hypoxanthine-guanine-xanthine phosphoribosyltransferase.
Hypoxanthine phosphoribosyltransferase EC:2.4.2.8.
Ribose-phosphate pyrophosphokinase i EC:2.7.6.1.
Amidophosphoribosyltransferase EC:2.4.2.14. Orotate
phosphoribosyltransferase EC:2.4.2.10. Uracil
phosphoribosyltransferase EC:2.4.2.9. Xanthine-guanine
phosphoribosyltransferase EC:2.4.2.22. In Arabidopsis,
At the very N-terminus of this domain is the P-Loop
NTPase domain.
Length = 123
Score = 28.5 bits (64), Expect = 1.4
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 171 PYWNENIATEIKQGKKVLVV----THGTSLRGLVKHIER 205
+ E+ +GK+VL+V G +LR V+ +++
Sbjct: 73 SVTLLSRLPELLKGKRVLIVDDVLDTGGTLRAAVELLKK 111
>gnl|CDD|206754 cd06223, PRTases_typeI, Phosphoribosyl transferase (PRT)-type I
domain. Phosphoribosyl transferase (PRT) domain. The
type I PRTases are identified by a conserved PRPP
binding motif which features two adjacent acidic
residues surrounded by one or more hydrophobic residue.
PRTases catalyze the displacement of the
alpha-1'-pyrophosphate of
5-phosphoribosyl-alpha1-pyrpphosphate (PRPP) by a
nitrogen-containing nucleophile. The reaction products
are an alpha-1 substituted ribose-5'-phosphate and a
free pyrophosphate (PP). PRPP, an activated form of
ribose-5-phosphate, is a key metabolite connecting
nucleotide synthesis and salvage pathways. The type I
PRTase family includes a range of diverse phosphoribosyl
transferase enzymes and regulatory proteins of the
nucleotide synthesis and salvage pathways, including
adenine phosphoribosyltransferase EC:2.4.2.7.,
hypoxanthine-guanine-xanthine phosphoribosyltransferase,
hypoxanthine phosphoribosyltransferase EC:2.4.2.8.,
ribose-phosphate pyrophosphokinase EC:2.7.6.1.,
amidophosphoribosyltransferase EC:2.4.2.14., orotate
phosphoribosyltransferase EC:2.4.2.10., uracil
phosphoribosyltransferase EC:2.4.2.9., and
xanthine-guanine phosphoribosyltransferase EC:2.4.2.22.
Length = 130
Score = 28.1 bits (63), Expect = 1.7
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 156 FPHTESLKETIMRVLPYWNENIATEIKQGKKVLVV----THGTSLRGLVKHIERK 206
F E PY E +GK+VL+V G +L ++ ++
Sbjct: 43 FIRKERKGPGRTPSEPYGLELPLGGDVKGKRVLLVDDVIATGGTLLAAIELLKEA 97
>gnl|CDD|223363 COG0286, HsdM, Type I restriction-modification system
methyltransferase subunit [Defense mechanisms].
Length = 489
Score = 28.5 bits (64), Expect = 2.6
Identities = 28/119 (23%), Positives = 41/119 (34%), Gaps = 18/119 (15%)
Query: 101 HVFLLGINNNFARFQVQIWRRSYDVL--PPPMTKDHKYYQD-IISNPNFKIDGPNEDQFP 157
++ L GI + R D L P KD K D +I+NP F G D
Sbjct: 233 NLILHGIEGDANI-------RHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLE 285
Query: 158 HTESLKETIMRVLPYWNENIATEIK--------QGKKVLVVTHGTSLRGLVKHIERKSL 208
+ + V P N ++ G+ +V+ G RG + RK L
Sbjct: 286 SEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDGVLFRGGAEKDIRKDL 344
>gnl|CDD|239196 cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-containing
prokaryotic phenylalanly tRNA synthetase (PheRS) beta
chain. PheRS aminoacylate phenylalanine transfer RNAs
(tRNAphe). PheRSs belong structurally to class II
aminoacyl tRNA synthetases (aaRSs) but, as they
aminoacylate the 2'OH of the terminal ribose of tRNA
they belong functionally to class 1 aaRSs. This domain
has general tRNA binding properties and is believed to
direct tRNAphe to the active site of the enzyme.
Length = 103
Score = 27.1 bits (61), Expect = 3.4
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 178 ATEIKQGKKVLVVTHGTSLRGLVKHIERKSLR 209
A ++ G KV+V G L G +K I+++ LR
Sbjct: 37 APNVRAGDKVVVALPGAVLPGGLK-IKKRKLR 67
>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein.
This model describes a subfamily of probable pyridoxal
phosphate-dependent enzymes in the aminotransferase
class V family. Related families contain members active
as cysteine desulfurases, selenocysteine lyases, or
both. The members of this family form a distinct clade
and all are shorter at the N-terminus. The function of
this subfamily is unknown [Unknown function, Enzymes of
unknown specificity].
Length = 376
Score = 28.1 bits (63), Expect = 3.6
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 162 LKETIMRVLPYWN---ENIATEIKQGKKVLVVTHGTSLRGLVKHIE 204
++ TI++ E I IK K++VV+H +++ G + IE
Sbjct: 112 VEITIVKCDNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPIE 157
Score = 28.1 bits (63), Expect = 4.1
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 49 LKETIMRVLPYWN---ENIATEIKQGKKVLVVTHGTSLRGLILKV 90
++ TI++ E I IK K++VV+H +++ G IL +
Sbjct: 112 VEITIVKCDNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPI 156
>gnl|CDD|129436 TIGR00336, pyrE, orotate phosphoribosyltransferase. Orotate
phosphoribosyltransferase (OPRTase) is involved in the
biosynthesis of pyrimidine nucleotides.
Alpha-D-ribosyldiphosphate 5-phosphate (PRPP) and
orotate are utilized to form pyrophosphate and orotidine
5'-monophosphate (OMP) in the presence of divalent
cations, preferably Mg2+. In a number of eukaryotes,
this protein is fused to a domain that catalyses the
reaction (EC 4.1.1.23). The combined activity of EC
2.4.2.10 and EC 4.1.1.23 is termed uridine
5'-monophosphate synthase. The conserved Lys (K) residue
at position 101 of the seed alignment has been proposed
as the active site for the enzyme [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 173
Score = 27.4 bits (61), Expect = 4.5
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 176 NIATEIKQGKKVLVV----THGTSLRGLVKHIE 204
NI E+ +G KV+VV T GTS+ V+ I+
Sbjct: 100 NIEGELLEGDKVVVVEDVITTGTSILEAVEIIQ 132
>gnl|CDD|107339 cd06344, PBP1_ABC_ligand_binding_like_9, Type I periplasmic
ligand-binding domain of uncharacterized ABC (ATPase
Binding Cassette)-type active transport systems that are
predicted to be involved in uptake of amino acids,
peptides, or inorganic ions. This subgroup includes the
type I periplasmic ligand-binding domain of
uncharacterized ABC (ATPase Binding Cassette)-type
active transport systems that are predicted to be
involved in uptake of amino acids, peptides, or
inorganic ions. Members of this group are
sequence-similar to members of the family of ABC-type
hydrophobic amino acid transporters, such as
leucine/isoleucine/valine binding protein (LIVBP);
however their ligand specificity has not been determined
experimentally.
Length = 332
Score = 27.6 bits (62), Expect = 4.8
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 38/102 (37%)
Query: 43 FPHTESLKETIMRVLPYWNENIATEIKQGKKVLV-----------VTHGTSLRGLILKVH 91
FP T++L + + +A +G+ L+ + G L GL+L V
Sbjct: 198 FPDTDTLDKAL---------EVAKA-NKGRLTLLGGDSLYTPDTLLDGGKDLEGLVLAV- 246
Query: 92 VGRPWGLQSHVFLLGINNNFARFQVQIWRR--------SYDV 125
PW H L N+ FA+ Q+W +YD
Sbjct: 247 ---PW----H-PLASPNSPFAKLAQQLWGGDVSWRTATAYDA 280
>gnl|CDD|236539 PRK09490, metH, B12-dependent methionine synthase; Provisional.
Length = 1229
Score = 27.4 bits (62), Expect = 6.6
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 16/42 (38%)
Query: 110 NFARFQVQIWRRSYDVL------PPPMTKDHKYYQDIISNPN 145
R +++I +R+YD+L PP +DII +PN
Sbjct: 496 TRER-KIEICKRAYDILTEEVGFPP---------EDIIFDPN 527
>gnl|CDD|235362 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated.
Length = 618
Score = 26.9 bits (61), Expect = 8.3
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Query: 73 KVLVVTHGTSLRGLILKVHVG 93
K +V+T GT LRG I H+G
Sbjct: 147 KAVVLTTGTFLRGKI---HIG 164
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.138 0.426
Gapped
Lambda K H
0.267 0.0657 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,995,715
Number of extensions: 1025480
Number of successful extensions: 1249
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1225
Number of HSP's successfully gapped: 59
Length of query: 212
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 119
Effective length of database: 6,812,680
Effective search space: 810708920
Effective search space used: 810708920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)