RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12135
(212 letters)
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A
{Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A*
2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Length = 267
Score = 147 bits (374), Expect = 3e-44
Identities = 45/90 (50%), Positives = 65/90 (72%)
Query: 115 QVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 174
QV++WRRSY+V PPP+ + H YYQ+I ++ +K+ DQ P +ESLK+ + R+LPYWN
Sbjct: 111 QVRLWRRSYNVTPPPIEESHPYYQEIYNDRRYKVCDVPLDQLPRSESLKDVLERLLPYWN 170
Query: 175 ENIATEIKQGKKVLVVTHGTSLRGLVKHIE 204
E IA E+ +GK +L+ HG S R L+KH+E
Sbjct: 171 ERIAPEVLRGKTILISAHGNSSRALLKHLE 200
Score = 135 bits (342), Expect = 2e-39
Identities = 41/85 (48%), Positives = 59/85 (69%)
Query: 3 VQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNE 62
V++WRRSY+V PPP+ + H YYQ+I + +K+ DQ P +ESLK+ + R+LPYWNE
Sbjct: 112 VRLWRRSYNVTPPPIEESHPYYQEIYNDRRYKVCDVPLDQLPRSESLKDVLERLLPYWNE 171
Query: 63 NIATEIKQGKKVLVVTHGTSLRGLI 87
IA E+ +GK +L+ HG S R L+
Sbjct: 172 RIAPEVLRGKTILISAHGNSSRALL 196
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET:
CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Length = 262
Score = 141 bits (359), Expect = 5e-42
Identities = 51/90 (56%), Positives = 64/90 (71%), Gaps = 2/90 (2%)
Query: 115 QVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 174
QV+IWRRSYDV PPPM DH +Y +I + + EDQ P ESLK+TI R LP+WN
Sbjct: 111 QVKIWRRSYDVPPPPMEPDHPFYSNISKDRRYA--DLTEDQLPSCESLKDTIARALPFWN 168
Query: 175 ENIATEIKQGKKVLVVTHGTSLRGLVKHIE 204
E I +IK+GK+VL+ HG SLRG+VKH+E
Sbjct: 169 EEIVPQIKEGKRVLIAAHGNSLRGIVKHLE 198
Score = 129 bits (328), Expect = 2e-37
Identities = 46/85 (54%), Positives = 59/85 (69%), Gaps = 2/85 (2%)
Query: 3 VQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNE 62
V+IWRRSYDV PPPM DH +Y +I + + EDQ P ESLK+TI R LP+WNE
Sbjct: 112 VKIWRRSYDVPPPPMEPDHPFYSNISKDRRYA--DLTEDQLPSCESLKDTIARALPFWNE 169
Query: 63 NIATEIKQGKKVLVVTHGTSLRGLI 87
I +IK+GK+VL+ HG SLRG++
Sbjct: 170 EIVPQIKEGKRVLIAAHGNSLRGIV 194
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and
gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia
coli} SCOP: c.60.1.1 PDB: 1e59_A*
Length = 249
Score = 135 bits (343), Expect = 8e-40
Identities = 40/90 (44%), Positives = 57/90 (63%), Gaps = 4/90 (4%)
Query: 115 QVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 174
QV+ WRR + V PP +TKD + Y +P + +E + P TESL TI RV+PYWN
Sbjct: 110 QVKQWRRGFAVTPPELTKDDERYP--GHDPRYA--KLSEKELPLTESLALTIDRVIPYWN 165
Query: 175 ENIATEIKQGKKVLVVTHGTSLRGLVKHIE 204
E I +K G++V++ HG SLR LVK+++
Sbjct: 166 ETILPRMKSGERVIIAAHGNSLRALVKYLD 195
Score = 123 bits (312), Expect = 4e-35
Identities = 37/85 (43%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 3 VQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNE 62
V+ WRR + V PP +TKD + Y +P + +E + P TESL TI RV+PYWNE
Sbjct: 111 VKQWRRGFAVTPPELTKDDERYP--GHDPRYA--KLSEKELPLTESLALTIDRVIPYWNE 166
Query: 63 NIATEIKQGKKVLVVTHGTSLRGLI 87
I +K G++V++ HG SLR L+
Sbjct: 167 TILPRMKSGERVIIAAHGNSLRALV 191
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural
genomics, medical STRU genomics of pathogenic protozoa,
MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Length = 258
Score = 135 bits (343), Expect = 9e-40
Identities = 43/90 (47%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
Query: 115 QVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 174
QV+IWRRSYD+ PP + K+ + N +K +D P TE LK+T+ RVLP+W
Sbjct: 119 QVKIWRRSYDIPPPKLDKEDNRWP--GHNVVYK--NVPKDALPFTECLKDTVERVLPFWF 174
Query: 175 ENIATEIKQGKKVLVVTHGTSLRGLVKHIE 204
++IA +I KKV+V HG SLRGLVKH++
Sbjct: 175 DHIAPDILANKKVMVAAHGNSLRGLVKHLD 204
Score = 123 bits (312), Expect = 4e-35
Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 4/85 (4%)
Query: 3 VQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNE 62
V+IWRRSYD+ PP + K+ + N +K +D P TE LK+T+ RVLP+W +
Sbjct: 120 VKIWRRSYDIPPPKLDKEDNRWP--GHNVVYK--NVPKDALPFTECLKDTVERVLPFWFD 175
Query: 63 NIATEIKQGKKVLVVTHGTSLRGLI 87
+IA +I KKV+V HG SLRGL+
Sbjct: 176 HIAPDILANKKVMVAAHGNSLRGLV 200
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET:
3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1
PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Length = 240
Score = 134 bits (341), Expect = 1e-39
Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 115 QVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 174
+ +RRS+DV PPP+ + Q + + + P TESL I R+LPYW
Sbjct: 108 KFNTYRRSFDVPPPPIDASSPFSQKGDE----RYKYVDPNVLPETESLALVIDRLLPYWQ 163
Query: 175 ENIATEIKQGKKVLVVTHGTSLRGLVKHIE 204
+ IA ++ GK V++ HG SLRGLVKH+E
Sbjct: 164 DVIAKDLLSGKTVMIAAHGNSLRGLVKHLE 193
Score = 122 bits (309), Expect = 6e-35
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 3 VQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNE 62
+RRS+DV PPP+ + Q +K + + P TESL I R+LPYW +
Sbjct: 109 FNTYRRSFDVPPPPIDASSPFSQKGD--ERYK--YVDPNVLPETESLALVIDRLLPYWQD 164
Query: 63 NIATEIKQGKKVLVVTHGTSLRGLI 87
IA ++ GK V++ HG SLRGL+
Sbjct: 165 VIAKDLLSGKTVMIAAHGNSLRGLV 189
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria,
glycolysis, I structural genomics consortium, SGC; 2.01A
{Cryptosporidium parvum}
Length = 267
Score = 135 bits (342), Expect = 2e-39
Identities = 38/90 (42%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 115 QVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 174
QV+IWRRS+DV PP + K + G P TE LK+T+ RV PY+
Sbjct: 128 QVKIWRRSFDVPPPVLEKSDPRWPGNEL----IYKGICPSCLPTTECLKDTVERVKPYFE 183
Query: 175 ENIATEIKQGKKVLVVTHGTSLRGLVKHIE 204
+ IA I GK VLV HG SLR L+ +E
Sbjct: 184 DVIAPSIMSGKSVLVSAHGNSLRALLYLLE 213
Score = 123 bits (311), Expect = 8e-35
Identities = 37/85 (43%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 3 VQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNE 62
V+IWRRS+DV PP + K + +K G P TE LK+T+ RV PY+ +
Sbjct: 129 VKIWRRSFDVPPPVLEKSDPRWP--GNELIYK--GICPSCLPTTECLKDTVERVKPYFED 184
Query: 63 NIATEIKQGKKVLVVTHGTSLRGLI 87
IA I GK VLV HG SLR L+
Sbjct: 185 VIAPSIMSGKSVLVSAHGNSLRALL 209
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat;
phosphoglyceromutase, decode, SBRI, niaid, UWPPG,
glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia
pseudomallei} PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A*
3lnt_A
Length = 257
Score = 134 bits (341), Expect = 2e-39
Identities = 39/90 (43%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 115 QVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 174
QV +WRRSYD PP + + ++P + +Q P TE LK+T+ RVLP WN
Sbjct: 117 QVLVWRRSYDTPPPALEPGDERA--PYADPRYA--KVPREQLPLTECLKDTVARVLPLWN 172
Query: 175 ENIATEIKQGKKVLVVTHGTSLRGLVKHIE 204
E+IA +K GK+VL+ HG SLR L+K+++
Sbjct: 173 ESIAPAVKAGKQVLIAAHGNSLRALIKYLD 202
Score = 123 bits (310), Expect = 8e-35
Identities = 38/85 (44%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 3 VQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNE 62
V +WRRSYD PP + + +P + +Q P TE LK+T+ RVLP WNE
Sbjct: 118 VLVWRRSYDTPPPALEPGDERA--PYADPRYA--KVPREQLPLTECLKDTVARVLPLWNE 173
Query: 63 NIATEIKQGKKVLVVTHGTSLRGLI 87
+IA +K GK+VL+ HG SLR LI
Sbjct: 174 SIAPAVKAGKQVLIAAHGNSLRALI 198
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 2.30A {Borrelia burgdorferi}
Length = 274
Score = 134 bits (340), Expect = 4e-39
Identities = 37/90 (41%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 115 QVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 174
+V IWRRSYDV P + + + + + + P TE LK+T+ RV+PYW
Sbjct: 135 KVLIWRRSYDVPPMSLDESDDRHPIKDP----RYKHIPKRELPSTECLKDTVARVIPYWT 190
Query: 175 ENIATEIKQGKKVLVVTHGTSLRGLVKHIE 204
+ IA E+ +GKKV+V HG SLR LVK+ +
Sbjct: 191 DEIAKEVLEGKKVIVAAHGNSLRALVKYFD 220
Score = 122 bits (309), Expect = 2e-34
Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 3 VQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNE 62
V IWRRSYDV P + + + P +K + + P TE LK+T+ RV+PYW +
Sbjct: 136 VLIWRRSYDVPPMSLDESDDRHPIKD--PRYK--HIPKRELPSTECLKDTVARVIPYWTD 191
Query: 63 NIATEIKQGKKVLVVTHGTSLRGLI 87
IA E+ +GKKV+V HG SLR L+
Sbjct: 192 EIAKEVLEGKKVIVAAHGNSLRALV 216
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate
mutase, SH3 domain binding, structural genom TBSGC;
1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Length = 265
Score = 133 bits (337), Expect = 8e-39
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Query: 115 QVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 174
Q WRRSYD PPP+ + ++ QD P + + P TE L + + R LPY+
Sbjct: 112 QFMAWRRSYDTPPPPIERGSQFSQDAD--PRYA----DIGGGPLTECLADVVARFLPYFT 165
Query: 175 ENIATEIKQGKKVLVVTHGTSLRGLVKHIE 204
+ I +++ GK VL+V HG SLR LVKH++
Sbjct: 166 DVIVGDLRVGKTVLIVAHGNSLRALVKHLD 195
Score = 121 bits (306), Expect = 4e-34
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 3 VQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNE 62
WRRSYD PPP+ + ++ QD P + + P TE L + + R LPY+ +
Sbjct: 113 FMAWRRSYDTPPPPIERGSQFSQDAD--PRYA----DIGGGPLTECLADVVARFLPYFTD 166
Query: 63 NIATEIKQGKKVLVVTHGTSLRGLI 87
I +++ GK VL+V HG SLR L+
Sbjct: 167 VIVGDLRVGKTVLIVAHGNSLRALV 191
>4eo9_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 2.45A {Mycobacterium leprae}
Length = 268
Score = 131 bits (333), Expect = 4e-38
Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Query: 115 QVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 174
+ WRRSYD PPP+ K ++ QD P + + P TE L + + R LPY+
Sbjct: 135 RFMAWRRSYDTPPPPIEKGSEFSQDAD--PRYT----DIGGGPLTECLADVVTRFLPYFT 188
Query: 175 ENIATEIKQGKKVLVVTHGTSLRGLVKHIE 204
+ I +++ G+ VL+V HG SLR LVKH++
Sbjct: 189 DVIVPDLRTGRTVLIVAHGNSLRALVKHLD 218
Score = 119 bits (302), Expect = 1e-33
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 3 VQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNE 62
WRRSYD PPP+ K ++ QD P + + P TE L + + R LPY+ +
Sbjct: 136 FMAWRRSYDTPPPPIEKGSEFSQDAD--PRYT----DIGGGPLTECLADVVTRFLPYFTD 189
Query: 63 NIATEIKQGKKVLVVTHGTSLRGLI 87
I +++ G+ VL+V HG SLR L+
Sbjct: 190 VIVPDLRTGRTVLIVAHGNSLRALV 214
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR
{Schizosaccharomyces pombe} SCOP: c.60.1.1
Length = 211
Score = 106 bits (268), Expect = 4e-29
Identities = 35/93 (37%), Positives = 44/93 (47%), Gaps = 29/93 (31%)
Query: 115 QVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 174
QVQIWRRSYD+ PP ESLK+T RVLPY+
Sbjct: 115 QVQIWRRSYDIAPPN-----------------------------GESLKDTAERVLPYYK 145
Query: 175 ENIATEIKQGKKVLVVTHGTSLRGLVKHIERKS 207
I I +G+KVL+ HG SLR L+ +E +
Sbjct: 146 STIVPHILKGEKVLIAAHGNSLRALIMDLEGLT 178
Score = 94.9 bits (237), Expect = 2e-24
Identities = 34/85 (40%), Positives = 40/85 (47%), Gaps = 29/85 (34%)
Query: 3 VQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNE 62
VQIWRRSYD+ PP ESLK+T RVLPY+
Sbjct: 116 VQIWRRSYDIAPPN-----------------------------GESLKDTAERVLPYYKS 146
Query: 63 NIATEIKQGKKVLVVTHGTSLRGLI 87
I I +G+KVL+ HG SLR LI
Sbjct: 147 TIVPHILKGEKVLIAAHGNSLRALI 171
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1,
signaling protein, low PH, alternative splicing,
cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus}
PDB: 2ikq_A 2h0q_A
Length = 264
Score = 88.9 bits (220), Expect = 9e-22
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 2/98 (2%)
Query: 114 FQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYW 173
F+ W + P + ++ + ++ + +ES I R
Sbjct: 117 FEWTKWVAGSTL-PAWIPPSELAAANLSVDTTYR-PHIPVSKLAISESYDTYINRSFQVT 174
Query: 174 NENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLREP 211
E I+ +G +L+V H +SL ++ S +
Sbjct: 175 KEIISECKSKGNNILIVAHASSLEACTCQLQGLSPQNS 212
Score = 79.3 bits (195), Expect = 4e-18
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 2/85 (2%)
Query: 3 VQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNE 62
W + P + ++ + ++ + +ES I R E
Sbjct: 119 WTKWVAGSTL-PAWIPPSELAAANLSVDTTYR-PHIPVSKLAISESYDTYINRSFQVTKE 176
Query: 63 NIATEIKQGKKVLVVTHGTSLRGLI 87
I+ +G +L+V H +SL
Sbjct: 177 IISECKSKGNNILIVAHASSLEACT 201
>3dcy_A Regulator protein; OMIM 610775, C12ORF5, tigar, TP53-induced
glycolysis and apoptosis regulator, CAsp target,
structural genomics medical relevance; HET: MSE; 1.75A
{Homo sapiens}
Length = 275
Score = 86.4 bits (214), Expect = 1e-20
Identities = 18/113 (15%), Positives = 36/113 (31%), Gaps = 15/113 (13%)
Query: 106 GINNNFARFQVQIWRRSYDVLPPPMTKD--------HKYYQDIISNPNFKID-GPNEDQF 156
G + R + R V PP + +++ + + D Q
Sbjct: 102 GKALSELRAMAKAAREECPVFTPPGGETLDQVKMRGIDFFEFLCQLILKEADQKEQFSQG 161
Query: 157 PHTESLKETIMRVLPYWNENIATEIKQ------GKKVLVVTHGTSLRGLVKHI 203
+ L+ ++ + P + + VLVV+HG +R L +
Sbjct: 162 SPSNCLETSLAEIFPLGKNHSSKVNSDSGIPGLAASVLVVSHGAYMRSLFDYF 214
Score = 76.7 bits (189), Expect = 4e-17
Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 15/97 (15%)
Query: 6 WRRSYDVLPPPMTKD--------HKYYQDIITNPNFKID-GPNEDQFPHTESLKETIMRV 56
R V PP + +++ + + D Q + L+ ++ +
Sbjct: 115 AREECPVFTPPGGETLDQVKMRGIDFFEFLCQLILKEADQKEQFSQGSPSNCLETSLAEI 174
Query: 57 LPYWNENIATEIKQ------GKKVLVVTHGTSLRGLI 87
P + + VLVV+HG +R L
Sbjct: 175 FPLGKNHSSKVNSDSGIPGLAASVLVVSHGAYMRSLF 211
Score = 30.9 bits (70), Expect = 0.24
Identities = 8/49 (16%), Positives = 19/49 (38%)
Query: 157 PHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIER 205
P E+L + MR + ++ +K+ + + G+ L +
Sbjct: 125 PGGETLDQVKMRGIDFFEFLCQLILKEADQKEQFSQGSPSNCLETSLAE 173
>3r7a_A Phosphoglycerate mutase, putative; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE EPE; 1.84A {Bacillus anthracis}
Length = 237
Score = 76.6 bits (189), Expect = 2e-17
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 8/97 (8%)
Query: 117 QIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNEN 176
++ V P + D E + R+ ++
Sbjct: 113 DAVGKAAGVTSPEELLKFSIQE-------VIDLIRAADPTKQAEDWELFSTRIKAEIDKI 165
Query: 177 IATEIKQ-GKKVLVVTHGTSLRGLVKHIERKSLREPV 212
K G VLVV HG + L++ ++ + V
Sbjct: 166 SEEAAKDGGGNVLVVVHGLLITTLIEMLDSSKTKLGV 202
Score = 68.5 bits (168), Expect = 2e-14
Identities = 15/85 (17%), Positives = 23/85 (27%), Gaps = 8/85 (9%)
Query: 4 QIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNEN 63
++ V P + D E + R+ ++
Sbjct: 113 DAVGKAAGVTSPEELLKFSIQE-------VIDLIRAADPTKQAEDWELFSTRIKAEIDKI 165
Query: 64 IATEIKQ-GKKVLVVTHGTSLRGLI 87
K G VLVV HG + LI
Sbjct: 166 SEEAAKDGGGNVLVVVHGLLITTLI 190
>3f3k_A Uncharacterized protein YKR043C; structural genomics,, PSI-2, prote
structure initiative; 1.75A {Saccharomyces cerevisiae}
PDB: 3lg2_A 3oi7_A* 3ll4_A*
Length = 265
Score = 58.2 bits (141), Expect = 1e-10
Identities = 10/103 (9%), Positives = 24/103 (23%), Gaps = 35/103 (33%)
Query: 115 QVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLK---ETIMRVLP 171
+ + W D E+ + + R +
Sbjct: 124 KERPWNIWRDGCEN------------------------------GETTQQIGLRLSRAIA 153
Query: 172 YWNENIATEIKQGK--KVLVVTHGTSLRGLVKHIERKSLREPV 212
+G+ ++V HG +LR +++
Sbjct: 154 RIQNLHRKHQSEGRASDIMVFAHGHALRYFAAIWFGLGVQKKC 196
Score = 49.3 bits (118), Expect = 2e-07
Identities = 10/90 (11%), Positives = 20/90 (22%), Gaps = 35/90 (38%)
Query: 3 VQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLK---ETIMRVLPY 59
+ W D E+ + + R +
Sbjct: 125 ERPWNIWRDGCEN------------------------------GETTQQIGLRLSRAIAR 154
Query: 60 WNENIATEIKQGK--KVLVVTHGTSLRGLI 87
+G+ ++V HG +LR
Sbjct: 155 IQNLHRKHQSEGRASDIMVFAHGHALRYFA 184
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM,
hydrolase; 1.76A {Bombyx mori}
Length = 263
Score = 55.5 bits (133), Expect = 1e-09
Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 8/96 (8%)
Query: 119 WRRSYDVLPPPMTKDHKYYQDIISNPNFKID---GPNEDQFPHTESLKETIMRVLPYWNE 175
++ + + + +D P + E++ E R
Sbjct: 121 FKNWHMPKGIDFMTPIELCKA-----GLNVDMTYKPYVEMDASAETMDEFFKRGEVAMQA 175
Query: 176 NIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLREP 211
+ K G V+ + H +L +V + R
Sbjct: 176 AVNDTEKDGGNVIFIGHAITLDQMVGALHRLRDDME 211
Score = 51.6 bits (123), Expect = 3e-08
Identities = 10/85 (11%), Positives = 25/85 (29%), Gaps = 8/85 (9%)
Query: 6 WRRSYDVLPPPMTKDHKYYQDIITNPNFKID---GPNEDQFPHTESLKETIMRVLPYWNE 62
++ + + + +D P + E++ E R
Sbjct: 121 FKNWHMPKGIDFMTPIELCKA-----GLNVDMTYKPYVEMDASAETMDEFFKRGEVAMQA 175
Query: 63 NIATEIKQGKKVLVVTHGTSLRGLI 87
+ K G V+ + H +L ++
Sbjct: 176 AVNDTEKDGGNVIFIGHAITLDQMV 200
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase;
1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Length = 273
Score = 52.4 bits (125), Expect = 1e-08
Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 2/98 (2%)
Query: 114 FQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYW 173
F+ W S +T + + + ES + + R
Sbjct: 126 FEWMKWEASKAT-LTFLTLEE-LKEANFNVDLDYRPALPRCSLMPAESYDQYVERCAVSM 183
Query: 174 NENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLREP 211
+ I T + L+V+H ++L + + RE
Sbjct: 184 GQIINTCPQDMGITLIVSHSSALDSCTRPLLGLPPREC 221
Score = 46.7 bits (110), Expect = 1e-06
Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 2/82 (2%)
Query: 6 WRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIA 65
W S +T + + + +++ ES + + R + I
Sbjct: 131 WEASKAT-LTFLTLEELKEANFNVDLDYR-PALPRCSLMPAESYDQYVERCAVSMGQIIN 188
Query: 66 TEIKQGKKVLVVTHGTSLRGLI 87
T + L+V+H ++L
Sbjct: 189 TCPQDMGITLIVSHSSALDSCT 210
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate
mutase, structural genomics, PSI, structure initiative;
2.20A {Mycobacterium tuberculosis}
Length = 208
Score = 48.8 bits (117), Expect = 2e-07
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 154 DQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLRE 210
P ES+ + R A E + VL V+HG R ++ + L E
Sbjct: 116 HGCPAGESVAQVNDRADSAVAL--ALEHMSSRDVLFVSHGHFSRAVITRWVQLPLAE 170
Score = 46.4 bits (111), Expect = 1e-06
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 41 DQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLI 87
P ES+ + R A E + VL V+HG R +I
Sbjct: 116 HGCPAGESVAQVNDRADSAVAL--ALEHMSSRDVLFVSHGHFSRAVI 160
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM
homolog; 1.69A {Bacillus stearothermophilus} SCOP:
c.60.1.1 PDB: 1h2f_A* 1ebb_A
Length = 207
Score = 48.4 bits (116), Expect = 2e-07
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 149 DGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSL 208
P+ E + R L + +G+ VL+VTHG L+ L+ + L
Sbjct: 109 QAPHLYAPQRGERFCDVQQRALEAVQS--IVDRHEGETVLIVTHGVVLKTLMAAFKDTPL 166
Query: 209 RE 210
Sbjct: 167 DH 168
Score = 46.0 bits (110), Expect = 1e-06
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 36 DGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLI 87
P+ E + R L + +G+ VL+VTHG L+ L+
Sbjct: 109 QAPHLYAPQRGERFCDVQQRALEAVQS--IVDRHEGETVLIVTHGVVLKTLM 158
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase
(phospho), phosphatase, hydrolase (phosp glycolysis,
bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus}
SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A*
1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Length = 469
Score = 48.1 bits (114), Expect = 7e-07
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 151 PNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLRE 210
++P ES ++ + R+ P E +++ + VLV+ H +R L+ + K+ E
Sbjct: 355 KYRYRYPKGESYEDLVQRLEPVIME-----LERQENVLVICHQAVMRCLLAYFLDKAAEE 409
Score = 45.0 bits (106), Expect = 8e-06
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 38 PNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLI 87
++P ES ++ + R+ P E +++ + VLV+ H +R L+
Sbjct: 355 KYRYRYPKGESYEDLVQRLEPVIME-----LERQENVLVICHQAVMRCLL 399
>1v37_A Phosphoglycerate mutase; riken structu genomics/proteomics
initiative, RSGI, structural genomics,; 1.40A {Thermus
thermophilus} SCOP: c.60.1.1 PDB: 1v7q_A 2hia_A 2pa0_A
2p2y_A 2p77_A 2p6m_A 2p9y_A 2p30_A 2ekz_A 2p9f_A 2p79_A
2p78_A 2p2z_A 2p75_A 2owe_A 2enu_A 2ekb_A 2p6o_A 2owd_A
2enw_A ...
Length = 177
Score = 44.9 bits (107), Expect = 3e-06
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 7/57 (12%)
Query: 155 QFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLREP 211
P ESL RV + A ++ THG +R +++ + L P
Sbjct: 103 HPPGGESLSAFQERVFRFLEGLKAP-------AVLFTHGGVVRAVLRALGEDGLVPP 152
Score = 41.1 bits (97), Expect = 6e-05
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Query: 42 QFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLI 87
P ESL RV + A ++ THG +R ++
Sbjct: 103 HPPGGESLSAFQERVFRFLEGLKAP-------AVLFTHGGVVRAVL 141
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 46.2 bits (109), Expect = 3e-06
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 151 PNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLRE 210
++P ES ++ + R+ P E +++ + VLV+ H LR L+ + KS E
Sbjct: 352 KYYYRYPTGESYQDLVQRLEPVIME-----LERQENVLVICHQAVLRCLLAYFLDKSAEE 406
Score = 42.8 bits (100), Expect = 4e-05
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 38 PNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLI 87
++P ES ++ + R+ P E +++ + VLV+ H LR L+
Sbjct: 352 KYYYRYPTGESYQDLVQRLEPVIME-----LERQENVLVICHQAVLRCLL 396
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 2e-05
Identities = 50/242 (20%), Positives = 82/242 (33%), Gaps = 79/242 (32%)
Query: 13 LPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRV---LPYWNENIATEIK 69
LPP + +D + + +P I ++Q +++ + + LP + + +
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQ------VQDYVNKTNSHLPA-GKQVEISLV 371
Query: 70 QGKKVLVVTHG--TSLRGLILKVH-VGRPWGL-QSHV-F---LLGINNNFARFQVQIWRR 121
G K LVV+ G SL GL L + P GL QS + F L +N F
Sbjct: 372 NGAKNLVVS-GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF---------- 420
Query: 122 SYDVLP---P---PMTKD--HKYYQDIISNPNFKIDGPNED-QFP--HT----------- 159
LP P + +D++ N N + +D Q P T
Sbjct: 421 ----LPVASPFHSHLLVPASDLINKDLVKN-NVSFNA--KDIQIPVYDTFDGSDLRVLSG 473
Query: 160 ---ESLKETIMRVLPYWNENIATEIKQGKKVLVVTH-------GTS-LRGLVKHI-ERKS 207
E + + I+R+ W + TH G S L L +
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFKA---------THILDFGPGGASGLGVLTHRNKDGTG 524
Query: 208 LR 209
+R
Sbjct: 525 VR 526
Score = 42.0 bits (98), Expect = 1e-04
Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 21/108 (19%)
Query: 103 FLLGINNNFARFQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESL 162
F +G R + + + LPP + +D + + +P I ++Q +
Sbjct: 304 FFIG-----VRCY-EAYPNTS--LPPSILEDSLENNEGVPSPMLSISNLTQEQ------V 349
Query: 163 KETIMRV---LPYWNENIATEIKQGKKVLVVTHG--TSLRGLVKHIER 205
++ + + LP + + + G K LVV+ G SL GL + +
Sbjct: 350 QDYVNKTNSHLPA-GKQVEISLVNGAKNLVVS-GPPQSLYGLNLTLRK 395
Score = 28.1 bits (62), Expect = 3.1
Identities = 37/198 (18%), Positives = 62/198 (31%), Gaps = 76/198 (38%)
Query: 41 DQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWGLQS 100
+ +P+T SL +I+ NE + + + L + L + +Q
Sbjct: 312 EAYPNT-SLPPSILEDSLENNEGVPSPM------LSI------SNLTQEQ-------VQD 351
Query: 101 HVFLLGINNNF-ARFQVQIW----RRSYDVL--PPPMTKDHKYYQDIIS-NPNF-KIDGP 151
+V N++ A QV+I ++ V+ PP Q + N K P
Sbjct: 352 YVNKT--NSHLPAGKQVEISLVNGAKNL-VVSGPP---------QSLYGLNLTLRKAKAP 399
Query: 152 NE-DQ--FPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVT---HGTSLRGLVKHIER 205
+ DQ P +E + R LP V H L I +
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLP------------------VASPFHSHLLVPASDLINK 441
Query: 206 -----------KSLREPV 212
K ++ PV
Sbjct: 442 DLVKNNVSFNAKDIQIPV 459
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2,
NYSGXRC, structural genomics, protein structure
initiative; 2.80A {Vibrio parahaemolyticus}
Length = 213
Score = 43.0 bits (102), Expect = 2e-05
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 4/72 (5%)
Query: 38 PNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWG 97
P P+ ESL RV W++ I +L+VTHG +R ++ V G W
Sbjct: 111 PAHHSLPNAESLSTFSQRVSRAWSQIIN---DINDNLLIVTHGGVIRIILAHVL-GVDWR 166
Query: 98 LQSHVFLLGINN 109
L I N
Sbjct: 167 NPQWYSTLAIGN 178
Score = 41.1 bits (97), Expect = 9e-05
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 151 PNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLRE 210
P P+ ESL RV W++ I +L+VTHG +R ++ H+ R
Sbjct: 111 PAHHSLPNAESLSTFSQRVSRAWSQIIN---DINDNLLIVTHGGVIRIILAHVLGVDWRN 167
Query: 211 P 211
P
Sbjct: 168 P 168
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 4e-05
Identities = 33/210 (15%), Positives = 64/210 (30%), Gaps = 38/210 (18%)
Query: 14 PPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN-ENIATEIKQGK 72
P MT+ + +D + N N F K + R+ PY E++ K
Sbjct: 105 PSMMTRMYIEQRDRLYNDN--------QVFA-----KYNVSRLQPYLKLRQALLELRPAK 151
Query: 73 KVLVVTHG------TSLRGLIL---KVHVGRPWGLQSHVFLLGINN-NFARFQVQIWRRS 122
VL+ G T + + KV + +F L + N N +++ ++
Sbjct: 152 NVLI--DGVLGSGKTWVALDVCLSYKVQCKMDFK----IFWLNLKNCNSPETVLEMLQKL 205
Query: 123 YDVLPPPMTKDHKYYQDIISNPNFKIDGPNE--DQFPHTESLKETIMR-VLPYWNENIAT 179
+ P T + +I + P+ L ++ V N
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LVLLNV---QNAKAWN 260
Query: 180 EIKQGKKVLVVTHGTSLRGLVKHIERKSLR 209
K+L+ T + + +
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Score = 38.7 bits (89), Expect = 0.001
Identities = 40/239 (16%), Positives = 68/239 (28%), Gaps = 101/239 (42%)
Query: 4 QIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNEN 63
I S +VL P + K + + FP + + ++ ++ W +
Sbjct: 357 TIIESSLNVLEPAEYR--KMFDR------LSV-------FPPSAHIPTILLSLI--WFDV 399
Query: 64 IATEI--------------KQGKKVLVVTHGTSL-------------RGLILKV------ 90
I +++ KQ K+ + L R ++
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 91 ----------------HVGR---------PWGLQSHVFLLGINNNFARF-QVQI------ 118
H+G L VFL +F RF + +I
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-----DF-RFLEQKIRHDSTA 513
Query: 119 WRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENI 177
W S +L + K+Y+ I D P E L I+ LP EN+
Sbjct: 514 WNASGSILN--TLQQLKFYKPYIC-----------DNDPKYERLVNAILDFLPKIEENL 559
Score = 37.5 bits (86), Expect = 0.003
Identities = 35/190 (18%), Positives = 60/190 (31%), Gaps = 57/190 (30%)
Query: 18 TKDHKY-YQDIITN--PNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKV 74
T +H+Y Y+DI++ F + + + ++I+ E I I V
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNF----DCKDVQDMPKSILS-----KEEIDHIIMSKDAV 61
Query: 75 LVVTHGTSLRGLILKVHVGRPWGLQSHVFLLGINNNFARFQVQIWRRSYDVL-------- 126
+ L W L +F ++ R +Y L
Sbjct: 62 ------SGTLRLF--------W-----TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 127 --PPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN-ENIATEIKQ 183
P MT+ + +D + N N F K + R+ PY E++
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDN--------QVFA-----KYNVSRLQPYLKLRQALLELRP 149
Query: 184 GKKVLVVTHG 193
K VL+ G
Sbjct: 150 AKNVLI--DG 157
>3e9c_A ZGC:56074; histidine phosphatase, hydrolase; 2.00A {Danio rerio}
PDB: 3e9d_A 3e9e_A
Length = 265
Score = 38.3 bits (89), Expect = 9e-04
Identities = 11/83 (13%), Positives = 21/83 (25%), Gaps = 28/83 (33%)
Query: 149 DGPNEDQFPHTESLKETIMRVLPYWNENIATEI--------------------------- 181
+ P E+L++ R +
Sbjct: 112 QSCRDYTPPGGETLEQVKTRFKMFLKSLFQRMFEEHGSALSSVPSEADQPVIAGLADDGA 171
Query: 182 -KQGKKVLVVTHGTSLRGLVKHI 203
L+V+HG +R V+H+
Sbjct: 172 QNVPVHALMVSHGAFIRISVRHL 194
Score = 36.0 bits (83), Expect = 0.005
Identities = 13/106 (12%), Positives = 25/106 (23%), Gaps = 32/106 (30%)
Query: 36 DGPNEDQFPHTESLKETIMRVLPYWNENIATEI--------------------------- 68
+ P E+L++ R +
Sbjct: 112 QSCRDYTPPGGETLEQVKTRFKMFLKSLFQRMFEEHGSALSSVPSEADQPVIAGLADDGA 171
Query: 69 -KQGKKVLVVTHGTSLRGLI----LKVHVGRPWGLQSHVFLLGINN 109
L+V+HG +R + + P GL+ + N
Sbjct: 172 QNVPVHALMVSHGAFIRISVRHLVEDLQCCLPAGLKMNQVFSPCPN 217
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU
proteolysis, structural genomics, PSI protein structure
initiative; 1.80A {Agrobacterium tumefaciens str}
Length = 219
Score = 37.9 bits (88), Expect = 0.001
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 160 ESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSL 208
E + R++ + + + V HG L HIE + +
Sbjct: 132 ERAIDAQARIVEAVKA-VLDRHDARQPIAFVGHGGVGTLLKCHIEGRGI 179
Score = 35.2 bits (81), Expect = 0.008
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 4/74 (5%)
Query: 47 ESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWGLQSHVFLLG 106
E + R++ + + + V HG L+ GR +
Sbjct: 132 ERAIDAQARIVEAVKA-VLDRHDARQPIAFVGHGGVGT-LLKCHIEGRG--ISRSKDQPA 187
Query: 107 INNNFARFQVQIWR 120
N RF + +
Sbjct: 188 GGGNLFRFSIAEFS 201
>3eoz_A Putative phosphoglycerate mutase; PGAM, malaria, structural
genomics, isomerase, structural GE consortium, SGC;
2.40A {Plasmodium falciparum}
Length = 214
Score = 34.0 bits (78), Expect = 0.023
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 149 DGPNEDQFPHTESLKETIMRVLPYWNENIATEI-KQGKKVLVVTHGTSLRGLVKHI 203
D + +KE R+ + + + LV+ HG +R +
Sbjct: 111 DPLPRHSKFDAQKIKEDNKRINKAYETYFYKPSGDEDEYQLVICHGNVIRYFLCRA 166
Score = 32.4 bits (74), Expect = 0.074
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 4/68 (5%)
Query: 36 DGPNEDQFPHTESLKETIMRVLPYWNENIATEI-KQGKKVLVVTHGTSLRGLI---LKVH 91
D + +KE R+ + + + LV+ HG +R + L++
Sbjct: 111 DPLPRHSKFDAQKIKEDNKRINKAYETYFYKPSGDEDEYQLVICHGNVIRYFLCRALQIP 170
Query: 92 VGRPWGLQ 99
+
Sbjct: 171 LFAWLRFS 178
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 33.6 bits (76), Expect = 0.035
Identities = 9/71 (12%), Positives = 23/71 (32%), Gaps = 15/71 (21%)
Query: 1 MSVQIWRRSYDVLPPPMTKDHKY-------YQDI-ITNPNFKIDGPNEDQFPHTESLKET 52
+S + L K K+ +++I I P +I + + +
Sbjct: 148 VS------GLE-LSDTKQKGKKFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDE 200
Query: 53 IMRVLPYWNEN 63
+ + +W+
Sbjct: 201 LNKKCTFWDAI 211
Score = 32.4 bits (73), Expect = 0.082
Identities = 8/59 (13%), Positives = 20/59 (33%), Gaps = 8/59 (13%)
Query: 126 LPPPMTKDHKY-------YQDI-ISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNEN 176
L K K+ +++I I P +I + + + + + +W+
Sbjct: 153 LSDTKQKGKKFLVIAYEPFENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAI 211
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate
pathway, isopentenyl phsophate kinase, beta-alpha
sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A
{Thermoplasma acidophilum} PDB: 3lkk_A*
Length = 249
Score = 32.6 bits (75), Expect = 0.068
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 50 KETIMRVLPYWNENIATEIKQGKKVLVVTHG 80
K Y +I + + ++ V HG
Sbjct: 18 KSAYRTARTYAIRSIVKVLSGIEDLVCVVHG 48
Score = 32.6 bits (75), Expect = 0.068
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 163 KETIMRVLPYWNENIATEIKQGKKVLVVTHG 193
K Y +I + + ++ V HG
Sbjct: 18 KSAYRTARTYAIRSIVKVLSGIEDLVCVVHG 48
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ;
2.0A {Escherichia coli} SCOP: e.22.1.2
Length = 408
Score = 32.6 bits (75), Expect = 0.087
Identities = 7/38 (18%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 175 ENIATEIKQGKKVLVVTHGTSLR--GLVKHIERKSLRE 210
+ +I +VL+ G S++ G++ + +L+
Sbjct: 41 AGLREQIPHDARVLITYGGGSVKKTGVLDQVL-DALKG 77
Score = 32.2 bits (74), Expect = 0.095
Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 62 ENIATEIKQGKKVLVVTHGTSLR--GLILKV 90
+ +I +VL+ G S++ G++ +V
Sbjct: 41 AGLREQIPHDARVLITYGGGSVKKTGVLDQV 71
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate
mutase family member 5, BXLBV68, MGC protein, structural
genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo
sapiens} PDB: 3o0t_A
Length = 202
Score = 31.3 bits (71), Expect = 0.14
Identities = 9/58 (15%), Positives = 17/58 (29%), Gaps = 3/58 (5%)
Query: 149 DGPNEDQFPHTESLKETIMRVLPYWNENIAT---EIKQGKKVLVVTHGTSLRGLVKHI 203
D P P E R+ + I ++ + + H +R +V
Sbjct: 97 DPPVSHWKPEAVQYYEDGARIEAAFRNYIHRADARQEEDSYEIFICHANVIRYIVCRA 154
Score = 30.6 bits (69), Expect = 0.30
Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 6/69 (8%)
Query: 36 DGPNEDQFPHTESLKETIMRVLPYWNENIAT---EIKQGKKVLVVTHGTSLRGLI---LK 89
D P P E R+ + I ++ + + H +R ++ L+
Sbjct: 97 DPPVSHWKPEAVQYYEDGARIEAAFRNYIHRADARQEEDSYEIFICHANVIRYIVCRALQ 156
Query: 90 VHVGRPWGL 98
L
Sbjct: 157 FPPEGWLRL 165
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO
structural genomics, JCSG, protein structure initiative,
PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP:
e.22.1.2
Length = 376
Score = 28.1 bits (63), Expect = 2.4
Identities = 5/37 (13%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 175 ENIATEIKQ-GKKVLVVTHGTSLRGLVKHIERKSLRE 210
+ E+ + G++ VV + ++ S +
Sbjct: 31 NILEEELSRFGERAFVVIDDFVDKNVLGENFFSSFTK 67
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid,
transferase; HET: ADP; 2.15A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 269
Score = 27.6 bits (62), Expect = 2.6
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 19/55 (34%)
Query: 27 IITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIK-QGKKVLVVTHG 80
+IT + + + D E IA+EI L++ HG
Sbjct: 13 VITRKDSEEPAIDRDNL------------------ERIASEIGNASPSSLMIVHG 49
Score = 26.1 bits (58), Expect = 8.2
Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 175 ENIATEIK-QGKKVLVVTHG 193
E IA+EI L++ HG
Sbjct: 30 ERIASEIGNASPSSLMIVHG 49
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG,
protein structure initiative, PSI, joint center for S
genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP:
e.22.1.2
Length = 407
Score = 28.0 bits (63), Expect = 2.7
Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 175 ENIATEIKQ--GKKVLVVTHGTSLR--GLVKHIERKSLRE 210
I EIK +KVL + G S++ G+ + SL++
Sbjct: 32 PKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVV-DSLKK 70
Score = 26.8 bits (60), Expect = 6.0
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 62 ENIATEIKQ--GKKVLVVTHGTSLR--GLILKV 90
I EIK +KVL + G S++ G+ +V
Sbjct: 32 PKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQV 64
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus
horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Length = 416
Score = 27.8 bits (62), Expect = 3.1
Identities = 17/88 (19%), Positives = 26/88 (29%)
Query: 38 PNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWG 97
N Q + L E + + N + I V+ H LI PW
Sbjct: 92 HNALQGNESLKLTEEMKELYLNVNRENSKFIDLSSFDYVLVHDPQPAALIEFYEKKSPWL 151
Query: 98 LQSHVFLLGINNNFARFQVQIWRRSYDV 125
+ H+ L N F F + +
Sbjct: 152 WRCHIDLSSPNREFWEFLRRFVEKYDRY 179
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A
{Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A
1ons_A 1izz_A
Length = 291
Score = 27.7 bits (61), Expect = 3.2
Identities = 13/63 (20%), Positives = 18/63 (28%), Gaps = 4/63 (6%)
Query: 38 PNEDQ--FPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILKVHVGRP 95
ED FP SL + V + + K+LV+ R L
Sbjct: 13 IAEDNAFFPSEYSLSQYTSPVSDLDGVDYPKPYRGKHKILVIA--ADERYLPTDNGKLFS 70
Query: 96 WGL 98
G
Sbjct: 71 TGN 73
>2exd_A NFED short homolog; membrane protein; NMR {Pyrococcus horikoshii}
SCOP: b.40.12.1
Length = 80
Score = 25.6 bits (56), Expect = 4.6
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 59 YWNENIATEIKQGKKVLVVTHGTSLRGLILKV 90
W ++ G +V+VV + GL LKV
Sbjct: 39 KWIAYSDEKLSLGDRVMVV----DVDGLKLKV 66
>2cul_A Glucose-inhibited division protein A-related PROT probable
oxidoreductase; rossmann fold, protein-FAD complex; HET:
FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Length = 232
Score = 26.4 bits (59), Expect = 5.7
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
Query: 71 GKKVLVVTHGTSLRGLILKVHVGR 94
G+KV V+ G+ L + +G
Sbjct: 114 GEKV-VLAVGSFLGARL---FLGG 133
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG;
modification, 5-carboxymethylaminomethyl uridine, WOBB
uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB:
2zxh_A* 2e57_A*
Length = 637
Score = 27.1 bits (61), Expect = 5.8
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 73 KVLVVTHGTSLRGLILKVHVGR 94
K +VVT GT L G+I ++G
Sbjct: 170 KAVVVTTGTFLNGVI---YIGD 188
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation;
2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X
2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Length = 365
Score = 26.8 bits (60), Expect = 6.0
Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 3/18 (16%)
Query: 4 QIWRRSYDVLPPPMTKDH 21
QI RSY VL KDH
Sbjct: 310 QI--RSY-VLDKNYVKDH 324
Score = 26.8 bits (60), Expect = 6.0
Identities = 10/18 (55%), Positives = 10/18 (55%), Gaps = 3/18 (16%)
Query: 117 QIWRRSYDVLPPPMTKDH 134
QI RSY VL KDH
Sbjct: 310 QI--RSY-VLDKNYVKDH 324
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 26.7 bits (60), Expect = 6.1
Identities = 9/22 (40%), Positives = 12/22 (54%), Gaps = 3/22 (13%)
Query: 73 KVLVVTHGTSLRGLILKVHVGR 94
K ++ GT L GLI H+G
Sbjct: 164 KAAILACGTFLNGLI---HIGM 182
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA;
tRNA modification, FAD binding domain, structural
genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Length = 651
Score = 26.6 bits (60), Expect = 6.2
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Query: 73 KVLVVTHGTSLRGLILKVHVG 93
K +V+T GT L G I H+G
Sbjct: 171 KAVVLTVGTFLDGKI---HIG 188
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 1.70A {Methanosarcina mazei}
Length = 153
Score = 26.2 bits (58), Expect = 6.4
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 47 ESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWG 97
ESLKE + R + E + G V + + +I V G
Sbjct: 49 ESLKEGVAREV---WEETGITMVPGDIAGQVNFELTEKKVIAIVFDGGYVV 96
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural
genomics, JCSG, PSI, protein structure initiative; HET:
MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2
PDB: 1vhd_A*
Length = 371
Score = 26.0 bits (58), Expect = 9.1
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 175 ENIATEIKQ-GKKVLVVTHGTSLR--GLVKHIERKSLRE 210
E I GK+ LVVT +S + G + ++ K L E
Sbjct: 30 EKRGNIIDLLGKRALVVTGKSSSKKNGSLDDLK-KLLDE 67
>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering
regulation, trapp complex, TR network, transport
protein; 1.80A {Saccharomyces cerevisiae}
Length = 162
Score = 25.8 bits (56), Expect = 9.8
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 134 HKYYQDIISNPNFKIDGPNEDQFPHTE 160
K Y + NP + G + E
Sbjct: 118 RKIYIRVKCNP-LLVSGDEKSIIKSLE 143
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.426
Gapped
Lambda K H
0.267 0.0787 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,392,796
Number of extensions: 197205
Number of successful extensions: 814
Number of sequences better than 10.0: 1
Number of HSP's gapped: 772
Number of HSP's successfully gapped: 93
Length of query: 212
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 123
Effective length of database: 4,216,824
Effective search space: 518669352
Effective search space used: 518669352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.9 bits)