RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12135
(212 letters)
>d2hhja1 c.60.1.1 (A:3-250) Phosphoglycerate mutase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 248
Score = 69.2 bits (168), Expect = 6e-15
Identities = 49/117 (41%), Positives = 73/117 (62%)
Query: 94 RPWGLQSHVFLLGINNNFARFQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNE 153
R +G + + N QV++WRRSY+V PPP+ + H YYQ+I ++ +K+
Sbjct: 88 RHYGALIGLNREQMALNHGEEQVRLWRRSYNVTPPPIEESHPYYQEIYNDRRYKVCDVPL 147
Query: 154 DQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLRE 210
DQ P +ESLK+ + R+LPYWNE IA E+ +GK +L+ HG S R L+KH+E S +
Sbjct: 148 DQLPRSESLKDVLERLLPYWNERIAPEVLRGKTILISAHGNSSRALLKHLEGISDED 204
Score = 61.5 bits (148), Expect = 3e-12
Identities = 40/84 (47%), Positives = 58/84 (69%)
Query: 4 QIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNEN 63
++WRRSY+V PPP+ + H YYQ+I + +K+ DQ P +ESLK+ + R+LPYWNE
Sbjct: 111 RLWRRSYNVTPPPIEESHPYYQEIYNDRRYKVCDVPLDQLPRSESLKDVLERLLPYWNER 170
Query: 64 IATEIKQGKKVLVVTHGTSLRGLI 87
IA E+ +GK +L+ HG S R L+
Sbjct: 171 IAPEVLRGKTILISAHGNSSRALL 194
>d1xq9a_ c.60.1.1 (A:) Phosphoglycerate mutase {Plasmodium
falciparum [TaxId: 5833]}
Length = 241
Score = 61.1 bits (147), Expect = 4e-12
Identities = 44/117 (37%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Query: 94 RPWGLQSHVFLLGINNNFARFQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNE 153
R +G + + QV+IWRRSYD+ PP + K+ + +
Sbjct: 90 RHYGSLQGLNKSETAKKYGEEQVKIWRRSYDIPPPKLDKEDNRWPGHN----VVYKNVPK 145
Query: 154 DQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLRE 210
D P TE LK+T+ RVLP+W ++IA +I KKV+V HG SLRGLVKH++ S +
Sbjct: 146 DALPFTECLKDTVERVLPFWFDHIAPDILANKKVMVAAHGNSLRGLVKHLDNLSEAD 202
Score = 52.7 bits (125), Expect = 4e-09
Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 4/87 (4%)
Query: 1 MSVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYW 60
V+IWRRSYD+ PP + K+ + +D P TE LK+T+ RVLP+W
Sbjct: 110 EQVKIWRRSYDIPPPKLDKEDNRWPGHN----VVYKNVPKDALPFTECLKDTVERVLPFW 165
Query: 61 NENIATEIKQGKKVLVVTHGTSLRGLI 87
++IA +I KKV+V HG SLRGL+
Sbjct: 166 FDHIAPDILANKKVMVAAHGNSLRGLV 192
>d1e58a_ c.60.1.1 (A:) Phosphoglycerate mutase {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 53.3 bits (127), Expect = 2e-09
Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Query: 94 RPWGLQSHVFLLGINNNFARFQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNE 153
R +G + + QV+ WRR + V PP +TKD + Y + + +E
Sbjct: 89 RHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYP----GHDPRYAKLSE 144
Query: 154 DQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLRE 210
+ P TESL TI RV+PYWNE I +K G++V++ HG SLR LVK+++ S E
Sbjct: 145 KELPLTESLALTIDRVIPYWNETILPRMKSGERVIIAAHGNSLRALVKYLDNMSEEE 201
Score = 46.4 bits (109), Expect = 6e-07
Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 4 QIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNEN 63
+ WRR + V PP +TKD + Y + + +E + P TESL TI RV+PYWNE
Sbjct: 112 KQWRRGFAVTPPELTKDDERYP----GHDPRYAKLSEKELPLTESLALTIDRVIPYWNET 167
Query: 64 IATEIKQGKKVLVVTHGTSLR 84
I +K G++V++ HG SLR
Sbjct: 168 ILPRMKSGERVIIAAHGNSLR 188
>d1fzta_ c.60.1.1 (A:) Phosphoglycerate mutase {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 211
Score = 49.2 bits (116), Expect = 5e-08
Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 1/117 (0%)
Query: 94 RPWGLQSHVFLLGINNNFARFQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNE 153
R + N + + Y + KD + +
Sbjct: 66 RAQKTCQIILEEVGEPNLETIKSEKLNERYYGDLQGLNKDDARKKWGAEQVQIWRRSYD- 124
Query: 154 DQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLRE 210
P+ ESLK+T RVLPY+ I I +G+KVL+ HG SLR L+ +E + +
Sbjct: 125 IAPPNGESLKDTAERVLPYYKSTIVPHILKGEKVLIAAHGNSLRALIMDLEGLTGDQ 181
Score = 45.4 bits (106), Expect = 1e-06
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 38 PNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLI 87
+ P+ ESLK+T RVLPY+ I I +G+KVL+ HG SLR LI
Sbjct: 122 SYDIAPPNGESLKDTAERVLPYYKSTIVPHILKGEKVLIAAHGNSLRALI 171
>d1riia_ c.60.1.1 (A:) Phosphoglycerate mutase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 243
Score = 49.2 bits (116), Expect = 6e-08
Identities = 43/164 (26%), Positives = 67/164 (40%), Gaps = 6/164 (3%)
Query: 47 ESLKETIMRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWGLQSHVFLLG 106
E + E + + + I L + R +G +
Sbjct: 43 ELIAEHDLLPDVLYTSLLRRAITTAHLALDSADRLWIPVRRSWRLNERHYGALQGLDKAE 102
Query: 107 INNNFARFQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETI 166
+ Q WRRSYD PPP+ + ++ QD + P TE L + +
Sbjct: 103 TKARYGEEQFMAWRRSYDTPPPPIERGSQFSQD------ADPRYADIGGGPLTECLADVV 156
Query: 167 MRVLPYWNENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLRE 210
R LPY+ + I +++ GK VL+V HG SLR LVKH+++ S E
Sbjct: 157 ARFLPYFTDVIVGDLRVGKTVLIVAHGNSLRALVKHLDQMSDDE 200
Score = 38.8 bits (89), Expect = 2e-04
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 1 MSVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYW 60
WRRSYD PPP+ + ++ QD + P TE L + + R LPY+
Sbjct: 110 EQFMAWRRSYDTPPPPIERGSQFSQD------ADPRYADIGGGPLTECLADVVARFLPYF 163
Query: 61 NENIATEIKQGKKVLVVTHGTSLRGLI 87
+ I +++ GK VL+V HG SLR L+
Sbjct: 164 TDVIVGDLRVGKTVLIVAHGNSLRALV 190
>d1bifa2 c.60.1.4 (A:250-468)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
phosphatase domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 219
Score = 40.6 bits (94), Expect = 5e-05
Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 5/97 (5%)
Query: 114 FQVQIWRRSYDVLPPPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYW 173
++ D + + ++P ES ++ + R+ P
Sbjct: 68 YEQFKVLNEIDAGVCEEMTYEEIQDHYPLEFALRDQDKYRYRYPKGESYEDLVQRLEPVI 127
Query: 174 NENIATEIKQGKKVLVVTHGTSLRGLVKHIERKSLRE 210
E +++ + VLV+ H +R L+ + K+ E
Sbjct: 128 ME-----LERQENVLVICHQAVMRCLLAYFLDKAAEE 159
Score = 36.0 bits (82), Expect = 0.001
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 5/87 (5%)
Query: 1 MSVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYW 60
D + + ++P ES ++ + R+ P
Sbjct: 68 YEQFKVLNEIDAGVCEEMTYEEIQDHYPLEFALRDQDKYRYRYPKGESYEDLVQRLEPVI 127
Query: 61 NENIATEIKQGKKVLVVTHGTSLRGLI 87
E +++ + VLV+ H +R L+
Sbjct: 128 ME-----LERQENVLVICHQAVMRCLL 149
>d1h2ea_ c.60.1.1 (A:) Broad specificity phosphatase PhoE (YhfR)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 207
Score = 29.3 bits (64), Expect = 0.29
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 2/83 (2%)
Query: 128 PPMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKV 187
+ Q + P+ E + R L + +G+ V
Sbjct: 88 WEGKTHDEIRQMDPIAFDHFWQAPHLYAPQRGERFCDVQQRALEAVQSIVDR--HEGETV 145
Query: 188 LVVTHGTSLRGLVKHIERKSLRE 210
L+VTHG L+ L+ + L
Sbjct: 146 LIVTHGVVLKTLMAAFKDTPLDH 168
Score = 25.4 bits (54), Expect = 4.5
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 2/73 (2%)
Query: 15 PPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKV 74
+ Q + P+ E + R L + +G+ V
Sbjct: 88 WEGKTHDEIRQMDPIAFDHFWQAPHLYAPQRGERFCDVQQRALEAVQSIVDR--HEGETV 145
Query: 75 LVVTHGTSLRGLI 87
L+VTHG L+ L+
Sbjct: 146 LIVTHGVVLKTLM 158
>d1oj7a_ e.22.1.2 (A:) Hypothetical oxidoreductase yqhD {Escherichia
coli [TaxId: 562]}
Length = 390
Score = 27.3 bits (59), Expect = 1.3
Identities = 6/32 (18%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 175 ENIATEIKQGKKVLVVTHGTSLR--GLVKHIE 204
+ +I +VL+ G S++ G++ +
Sbjct: 23 AGLREQIPHDARVLITYGGGSVKKTGVLDQVL 54
Score = 26.6 bits (57), Expect = 2.7
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 62 ENIATEIKQGKKVLVVTHGTSLRGL 86
+ +I +VL+ G S++
Sbjct: 23 AGLREQIPHDARVLITYGGGSVKKT 47
>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus
cereus [TaxId: 1396]}
Length = 251
Score = 26.5 bits (57), Expect = 2.4
Identities = 13/124 (10%), Positives = 38/124 (30%), Gaps = 8/124 (6%)
Query: 69 KQGKKVLVVTHGTSLRGLILKVHVGRPWGLQSHVFLLGINNNFARFQVQIWRRSYDVLPP 128
++G VL++ G L + GR + I +
Sbjct: 23 EEGANVLLLDKGNKLGRKLAISGGGRCN--------VTNRLPLDEIVKHIPGNGRFLYSA 74
Query: 129 PMTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKKVL 188
+++ N K+ + + + ++++ L +++ +I+ V
Sbjct: 75 FSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVE 134
Query: 189 VVTH 192
+ +
Sbjct: 135 TIEY 138
>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 366
Score = 26.1 bits (56), Expect = 4.2
Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 175 ENIATEIKQ-GKKVLVVTHGTSLRGLVKHIERKSLRE 210
IA ++ G K +V+ + I L++
Sbjct: 20 TKIANYLEGIGNKTVVIADEIVWKIAGHTIV-NELKK 55
>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga
maritima [TaxId: 2336]}
Length = 359
Score = 25.8 bits (55), Expect = 4.9
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 175 ENIATEIKQ-GKKVLVVTHGTSLR--GLVKHIERKSLRE 210
E I GK+ LVVT +S + G + ++ K L E
Sbjct: 18 EKRGNIIDLLGKRALVVTGKSSSKKNGSLDDLK-KLLDE 55
>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 180
Score = 25.0 bits (53), Expect = 5.5
Identities = 17/153 (11%), Positives = 37/153 (24%), Gaps = 7/153 (4%)
Query: 2 SVQIWRRSYDVLPPPMTKDHKYYQDIITNPNFKIDGPNEDQFPHTESLKETIMRVLPYWN 61
V+IW +D + + + N E E+ + ++ V
Sbjct: 25 EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVSTDGV 84
Query: 62 ENIATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWGLQSHVFLLGINNNFARFQVQIWRR 121
+ + I K + + + V + A I R
Sbjct: 85 LPVMSRILPYLKDQYIVLISK-GLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIARE 143
Query: 122 SYDVLPPPMT------KDHKYYQDIISNPNFKI 148
+P + ++I F +
Sbjct: 144 VAKRMPTTVVFSSPSESSANKMKEIFETEYFGV 176
>d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima
[TaxId: 2336]}
Length = 364
Score = 25.0 bits (53), Expect = 7.9
Identities = 5/37 (13%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 175 ENIATEIKQ-GKKVLVVTHGTSLRGLVKHIERKSLRE 210
+ E+ + G++ VV + ++ S +
Sbjct: 20 NILEEELSRFGERAFVVIDDFVDKNVLGENFFSSFTK 56
>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE
{Haemophilus influenzae [TaxId: 727]}
Length = 171
Score = 24.5 bits (52), Expect = 8.6
Identities = 14/117 (11%), Positives = 32/117 (27%), Gaps = 5/117 (4%)
Query: 70 QGKKVLVVTHGTSLRGLILKVHVGRPWGLQSHVFLLGINNNFARFQVQIWRRSYDVLPPP 129
+ VL++ G + +G++L + + + ++ RFQ ++
Sbjct: 17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVS----- 71
Query: 130 MTKDHKYYQDIISNPNFKIDGPNEDQFPHTESLKETIMRVLPYWNENIATEIKQGKK 186
M D++ N + + Y I K
Sbjct: 72 MDSIPLQTYDLVINATSAGLSGGTASVDAEILKLGSAFYDMQYAKGTDTPFIALCKS 128
>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate
dehydrogenase, C-domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 24.0 bits (51), Expect = 9.9
Identities = 9/60 (15%), Positives = 20/60 (33%)
Query: 65 ATEIKQGKKVLVVTHGTSLRGLILKVHVGRPWGLQSHVFLLGINNNFARFQVQIWRRSYD 124
A +QG + VV+H + + V G++ V + ++ +
Sbjct: 7 AKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTN 66
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.426
Gapped
Lambda K H
0.267 0.0489 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 852,957
Number of extensions: 40547
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 32
Length of query: 212
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,295,466
Effective search space: 169706046
Effective search space used: 169706046
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)