BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12136
(399 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 149 bits (376), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 70/137 (51%), Positives = 102/137 (74%), Gaps = 1/137 (0%)
Query: 258 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVK 316
+ GKI ++L +ST++ LIV +I+C +L MD+NG+SDPF+KL+LKPD+ K+ K+KT +K
Sbjct: 22 ERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIK 81
Query: 317 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWV 376
KTLNP FNEEF + K ++L+K++L I+VWD D GKSNDY+G +L ++KG+RL+HW
Sbjct: 82 KKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWY 141
Query: 377 DMMKYPDHKHEGIHNLS 393
+ +K D K E H L
Sbjct: 142 ECLKNKDKKIERWHQLQ 158
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Query: 97 RGVITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCK 156
RG+ E+E G I +++ Y + L V + R L AMD +G SDPF K
Sbjct: 4 RGMALYEEEQVERIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVK 63
Query: 157 LNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD-KYGHDF 215
L L P + +T+ +T+NPEF+E+ FY + +DL+ +SL I V D D +D+
Sbjct: 64 LWLKPDMGKKAKHKTQIKKKTLNPEFNEEF-FYDIKHSDLAKKSLDISVWDYDIGKSNDY 122
Query: 216 LGEARFPLN 224
+G + ++
Sbjct: 123 IGGCQLGIS 131
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/135 (51%), Positives = 101/135 (74%), Gaps = 1/135 (0%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWK 318
GKI ++L +ST++ LIV +I+C +L MD+NG+SDPF+KL+LKPD+ K+ K+KT +K K
Sbjct: 2 GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK 61
Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 378
TLNP FNEEF + K ++L+K++L I+VWD D GKSNDY+G +L ++KG+RL+HW +
Sbjct: 62 TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYEC 121
Query: 379 MKYPDHKHEGIHNLS 393
+K D K E H L
Sbjct: 122 LKNKDKKIERWHQLQ 136
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
G I +++ Y + L V + R L AMD +G SDPF KL L P + +T+ +
Sbjct: 2 GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK 61
Query: 177 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDD-KYGHDFLGEARFPLN 224
T+NPEF+E+ FY + +DL+ +SL I V D D +D++G + ++
Sbjct: 62 TLNPEFNEEF-FYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGIS 109
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 144 bits (364), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 100/137 (72%), Gaps = 1/137 (0%)
Query: 258 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVK 316
+ GKI ++L +ST++ LIV +I+C +L D+NG+SDPF+KL+LKPD K+ K+KT +K
Sbjct: 22 ERGKILVSLXYSTQQGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIK 81
Query: 317 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWV 376
KTLNP FNEEF + K ++L+K++L I+VWD D GKSNDY+G +L ++KG+RL+HW
Sbjct: 82 KKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWY 141
Query: 377 DMMKYPDHKHEGIHNLS 393
+ +K D K E H L
Sbjct: 142 ECLKNKDKKIERWHQLQ 158
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
G I +++ Y + L V + R L A D +G SDPF KL L P + +T+ +
Sbjct: 24 GKILVSLXYSTQQGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKK 83
Query: 177 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDD-KYGHDFLGEARFPLN 224
T+NPEF+E+ FY + +DL+ +SL I V D D +D++G + ++
Sbjct: 84 TLNPEFNEEF-FYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGIS 131
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 90/283 (31%), Positives = 146/283 (51%), Gaps = 17/283 (6%)
Query: 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
LG ++ ++ YD L V + +A L A+D+ GTSDP+ K+ L+P K + TK
Sbjct: 5 LGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKVHR 62
Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLR-PHISRD 233
+T+NP F+E+ TF V ++L+ ++L + V D D++ HD +GE + P+N + H++ +
Sbjct: 63 KTLNPVFNEQFTF-KVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 121
Query: 234 LCLNLCKHYPVPRXXXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGF 293
R + G I +L + L V +++ NL MD G
Sbjct: 122 W-----------RDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGL 170
Query: 294 SDPFIKLYLKPD-LHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 352
SDP++K++L + +K KT +K TLNP +NE F+ E ++ K +V+TV D D
Sbjct: 171 SDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKI 230
Query: 353 KSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 395
ND +G + + NS G LRHW DM+ P H L ++
Sbjct: 231 GKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 273
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 90/138 (65%), Gaps = 4/138 (2%)
Query: 103 EKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPL 162
E + + QA T LG++E ++ YD +L T+ RAKGL+ MD +G +DP+ KL+L+P
Sbjct: 3 EANSYDSDQA-TTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPG 61
Query: 163 TKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARF 221
S++LRTKT T NP ++E L ++ ++E D+ ++L I V D+DK+GH +F+GE RF
Sbjct: 62 ASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRF 121
Query: 222 PLNRLRPHISRDLCLNLC 239
L +L+ + ++ N+C
Sbjct: 122 SLKKLKANQRKN--FNIC 137
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 318
G + +L + L +I+ L PMDSNG +DP++KL+L P K K +T
Sbjct: 16 GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN 75
Query: 319 TLNPIFNEEFAIETKITE--LSKQTLVITVWDKDYGKSNDYLG 359
T NP++NE ITE + ++TL I+V D+D N+++G
Sbjct: 76 TRNPVWNETLQYHG-ITEEDMQRKTLRISVCDEDKFGHNEFIG 117
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 108 bits (270), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 86/131 (65%), Gaps = 3/131 (2%)
Query: 110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 169
S T LG++E ++ YD +L T+ RAKGL+ MD +G +DP+ KL+L+P S++L
Sbjct: 7 SDEATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKL 66
Query: 170 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 228
RTKT T NP ++E L ++ ++E D+ ++L I V D+DK+GH +F+GE RF L +L+
Sbjct: 67 RTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKA 126
Query: 229 HISRDLCLNLC 239
+ ++ N+C
Sbjct: 127 NQRKN--FNIC 135
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 318
G + +L + L +I+ L PMDSNG +DP++KL+L P K K +T
Sbjct: 14 GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN 73
Query: 319 TLNPIFNEEFAIETKITE--LSKQTLVITVWDKDYGKSNDYLG 359
T NP++NE ITE + ++TL I+V D+D N+++G
Sbjct: 74 TRNPVWNETLQYHG-ITEEDMQRKTLRISVCDEDKFGHNEFIG 115
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 130/289 (44%), Gaps = 21/289 (7%)
Query: 110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 169
+A G I + Y + L V + +A L A D +G SDP+ K+ L+P K +
Sbjct: 1 GEAGAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKK--KF 58
Query: 170 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 228
+TK +T+NP F+E F SV +L+ + LH V D D++ HD +G+
Sbjct: 59 QTKVHRKTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQ---------- 107
Query: 229 HISRDLCLNLCKH---YPVPRXXXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNL 285
+ D L L + P+ R G++ +LC+ L V +IK +NL
Sbjct: 108 -VVLDNLLELAEQPPDRPLWRDILEGGSEKA-DLGELNFSLCYLPTAGLLTVTIIKASNL 165
Query: 286 IPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVI 344
MD GFSDP++K L + + +K KT +K TLNP +NE + + L I
Sbjct: 166 KAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSI 225
Query: 345 TVWDKDYGKSNDYLGCLELCCNSKGDRLR-HWVDMMKYPDHKHEGIHNL 392
V D D N+ +G + + R HW +M+ P E H L
Sbjct: 226 AVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQL 274
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 130/288 (45%), Gaps = 21/288 (7%)
Query: 111 QADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLR 170
+A G I + Y + L V + +A L A D +G SDP+ K+ L+P K + +
Sbjct: 1 EAGAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKK--KFQ 58
Query: 171 TKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPH 229
TK +T+NP F+E F SV +L+ + LH V D D++ HD +G+
Sbjct: 59 TKVHRKTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQ----------- 106
Query: 230 ISRDLCLNLCKH---YPVPRXXXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNLI 286
+ D L L + P+ R G++ +LC+ L V +IK +NL
Sbjct: 107 VVLDNLLELAEQPPDRPLWRDILEGGSEKA-DLGELNFSLCYLPTAGLLTVTIIKASNLK 165
Query: 287 PMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVIT 345
MD GFSDP++K L + + +K KT +K TLNP +NE + + L I
Sbjct: 166 AMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIA 225
Query: 346 VWDKDYGKSNDYLGCLELCCNSKGDRLR-HWVDMMKYPDHKHEGIHNL 392
V D D N+ +G + + R HW +M+ P E H L
Sbjct: 226 VVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQL 273
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 76/135 (56%), Gaps = 1/135 (0%)
Query: 259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLK-PDLHKRKYKTGVKW 317
G++ L+LC++ ++IVN+IK NL MD G SDP++K++L D K KT K
Sbjct: 2 RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKK 61
Query: 318 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVD 377
+ LNPIFNE FA + +L + T++ITV DKD ND +G + L S ++HW D
Sbjct: 62 RNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKD 121
Query: 378 MMKYPDHKHEGIHNL 392
M+ P H L
Sbjct: 122 MIARPRQPVAQWHQL 136
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
G + L++ Y+ + S+ V + +A+ L+AMDI GTSDP+ K+ L+ K + +T T R
Sbjct: 3 GELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKR 62
Query: 177 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGE 218
+NP F+E F + L ++ I V+D DK +D +G+
Sbjct: 63 NLNPIFNESFAF-DIPTEKLRETTIIITVMDKDKLSRNDVIGK 104
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 319
GK+ +L + + L+V +I+ L +D G SDP++K++L PD K+K++T V KT
Sbjct: 21 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-KKKKFETKVHRKT 79
Query: 320 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVD 377
LNP+FNE+F + +EL +TLV+ V+D D +D +G ++ N+ G W D
Sbjct: 80 LNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 139
Query: 378 M 378
+
Sbjct: 140 L 140
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 66/110 (60%), Gaps = 4/110 (3%)
Query: 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
LG ++ ++ YD L V + +A L A+D+ GTSDP+ K+ L+P K + TK
Sbjct: 20 LGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKK--KKFETKVHR 77
Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLN 224
+T+NP F+E+ TF V ++L ++L + V D D++ HD +GE + P+N
Sbjct: 78 KTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMN 126
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 319
GK+ +L + + L+V +I+ L +D G SDP++K++L PD K+K++T V KT
Sbjct: 21 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-KKKKFETKVHRKT 79
Query: 320 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVD 377
LNP+FNE+F + +EL +TLV+ V+D D +D +G ++ N+ G W D
Sbjct: 80 LNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 139
Query: 378 M 378
+
Sbjct: 140 L 140
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 66/110 (60%), Gaps = 4/110 (3%)
Query: 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
LG ++ ++ YD L V + +A L A+D+ GTSDP+ K+ L+P K + TK
Sbjct: 20 LGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKK--KKFETKVHR 77
Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLN 224
+T+NP F+E+ TF V ++L ++L + V D D++ HD +GE + P+N
Sbjct: 78 KTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMN 126
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 319
GK+ +L + + L+V +I+ L +D G SDP++K++L PD K+K++T V KT
Sbjct: 29 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-KKKKFETKVHRKT 87
Query: 320 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVD 377
LNP+FNE+F + +EL +TLV+ V+D D +D +G ++ N+ G W D
Sbjct: 88 LNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 147
Query: 378 M 378
+
Sbjct: 148 L 148
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 66/110 (60%), Gaps = 4/110 (3%)
Query: 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
LG ++ ++ YD L V + +A L A+D+ GTSDP+ K+ L+P K + TK
Sbjct: 28 LGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKK--KKFETKVHR 85
Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLN 224
+T+NP F+E+ TF V ++L ++L + V D D++ HD +GE + P+N
Sbjct: 86 KTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMN 134
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 80.5 bits (197), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/121 (35%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 319
GK+ +L + + L+V +I+ L +D G SDP++K++L PD K+K++T V KT
Sbjct: 4 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-KKKKFETKVHRKT 62
Query: 320 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVD 377
LNP+FNE+F + +EL +TLV+ V+D D +D +G ++ N+ G W D
Sbjct: 63 LNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 122
Query: 378 M 378
+
Sbjct: 123 L 123
Score = 68.2 bits (165), Expect = 8e-12, Method: Composition-based stats.
Identities = 40/110 (36%), Positives = 66/110 (60%), Gaps = 4/110 (3%)
Query: 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
LG ++ ++ YD L V + +A L A+D+ GTSDP+ K+ L+P K + TK
Sbjct: 3 LGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKK--KFETKVHR 60
Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLN 224
+T+NP F+E+ TF V ++L ++L + V D D++ HD +GE + P+N
Sbjct: 61 KTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMN 109
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 65/113 (57%), Gaps = 3/113 (2%)
Query: 115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC 174
NLG I+ +V Y+ +L V + +A+ L A D GTSDPF K+ L+P K H+L TK
Sbjct: 11 NLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKK--HKLETKVK 68
Query: 175 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 226
+ +NP ++E F + + L++ VLD D++ +D +GE PLN++
Sbjct: 69 RKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKV 121
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 319
G+I ++ ++ ++ L V ++K L D +G SDPF+K+YL PD K K +T VK K
Sbjct: 13 GRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPD-KKHKLETKVKRKN 71
Query: 320 LNPIFNEEFAIETKITE-LSKQTLVITVWDKDYGKSNDYLGCLELCCN 366
LNP +NE F E E + ++ L + V D D ND +G + + N
Sbjct: 72 LNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLN 119
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVKWK 318
G I +L + L V +++ NL MD G SDP++K++L + +K KT +K
Sbjct: 4 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 63
Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 378
TLNP +NE F+ E ++ K +V+TV D D ND +G + + NS G LRHW DM
Sbjct: 64 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 123
Query: 379 MKYPDHKHEGIHNLSIK 395
+ P H L ++
Sbjct: 124 LANPRRPIAQWHTLQVE 140
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
LG I ++ Y T L V + AK L+ MD+ G SDP+ K++L+ K + +T
Sbjct: 3 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK 62
Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLN 224
T+NP ++E +F E +Q + + VLD DK G +D +G+ N
Sbjct: 63 NTLNPYYNESFSFEVPFEQIQKVQVV-VTVLDYDKIGKNDAIGKVFVGYN 111
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVKWK 318
G I +L + L V +++ NL MD G SDP++K++L + +K KT +K
Sbjct: 5 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 64
Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 378
TLNP +NE F+ E ++ K +V+TV D D ND +G + + NS G LRHW DM
Sbjct: 65 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 124
Query: 379 MKYPDHKHEGIHNLSIK 395
+ P H L ++
Sbjct: 125 LANPRRPIAQWHTLQVE 141
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
LG I ++ Y T L V + AK L+ MD+ G SDP+ K++L+ K + +T
Sbjct: 4 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK 63
Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLN 224
T+NP ++E +F E +Q + + VLD DK G +D +G+ N
Sbjct: 64 NTLNPYYNESFSFEVPFEQIQKVQVV-VTVLDYDKIGKNDAIGKVFVGYN 112
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVKWK 318
G I +L + L V +++ NL MD G SDP++K++L + +K KT +K
Sbjct: 12 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 71
Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 378
TLNP +NE F+ E ++ K +V+TV D D ND +G + + NS G LRHW DM
Sbjct: 72 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 131
Query: 379 MKYPDHKHEGIHNLSIK 395
+ P H L ++
Sbjct: 132 LANPRRPIAQWHTLQVE 148
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
LG I ++ Y T L V + AK L+ MD+ G SDP+ K++L+ K + +T
Sbjct: 11 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK 70
Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLN 224
T+NP ++E +F E +Q + + VLD DK G +D +G+ N
Sbjct: 71 NTLNPYYNESFSFEVPFEQIQKVQVV-VTVLDYDKIGKNDAIGKVFVGYN 119
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 15/129 (11%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--------RKY 311
G+I L + + LI+++++ NL+P D+NG+SDPF+K+YL P + +Y
Sbjct: 7 GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 312 KTGVKW--KTLNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLG--CLELCCN 366
K K+ K+LNP +N+ ++ + +L K+TL +TVWD D SND+LG ++L
Sbjct: 65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124
Query: 367 SKGDRLRHW 375
S D W
Sbjct: 125 SHLDNTPRW 133
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 12/117 (10%)
Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPL---------TKTSH 167
G I+L + YD +H+ +A+ L D +G SDPF K+ L+P +
Sbjct: 7 GEIQLQINYDLGNLIIHIL--QARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 168 RLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY-GHDFLGEARFPL 223
+ RTK +++NPE+++ + + S+S L ++L + V D D++ +DFLGE L
Sbjct: 65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL 121
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 4/110 (3%)
Query: 258 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVK 316
+ G+I+L + +K L V + NLIPMD NG SDP++KL L PD ++ K KT
Sbjct: 4 KRGRIYLKAEVTDEK--LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTI 61
Query: 317 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCN 366
TLNP +NE F + K ++ ++ L + +WD D ND++G L +
Sbjct: 62 RSTLNPQWNESFTFKLKPSDKDRR-LSVEIWDWDRTTRNDFMGSLSFGVS 110
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 5/101 (4%)
Query: 128 TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLT 187
T LHVT+ AK L MD +G SDP+ KL L+P K + +TKT T+NP+++E T
Sbjct: 15 TDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFT 74
Query: 188 F-YSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 226
F S+ D + L + + D D+ +DF+G F ++ L
Sbjct: 75 FKLKPSDKD---RRLSVEIWDWDRTTRNDFMGSLSFGVSEL 112
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 258 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVK 316
+ G+I+L + +K L V + NLIPMD NG SDP++KL L PD ++ K KT
Sbjct: 3 KRGRIYLKAEVTDEK--LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTI 60
Query: 317 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCC 365
TLNP +NE F + K ++ ++ L + +WD D ND++G L
Sbjct: 61 RSTLNPQWNESFTFKLKPSDKDRR-LSVEIWDWDRTTRNDFMGSLSFGV 108
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 5/101 (4%)
Query: 128 TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLT 187
T LHVT+ AK L MD +G SDP+ KL L+P K + +TKT T+NP+++E T
Sbjct: 14 TDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFT 73
Query: 188 F-YSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 226
F S+ D + L + + D D+ +DF+G F ++ L
Sbjct: 74 FKLKPSDKD---RRLSVEIWDWDRTTRNDFMGSLSFGVSEL 111
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 6/92 (6%)
Query: 277 VNLIKCTNLIPMDSNGFSDPFIKLYLKPD---LHKRKYKTGVKWKTLNPIFNEEFAIETK 333
V + + NLIPMD NG SDP++KL L PD L K+K +T VK TLNP++NE F K
Sbjct: 24 VTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRT-VK-ATLNPVWNETFVFNLK 81
Query: 334 ITELSKQTLVITVWDKDYGKSNDYLGCLELCC 365
++ ++ L + VWD D ND++G +
Sbjct: 82 PGDVERR-LSVEVWDWDRTSRNDFMGAMSFGV 112
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 4/111 (3%)
Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
G ++L + T +HVT+ A+ L MD +G SDP+ KL L+P + + +T+T
Sbjct: 8 GRLQLEIRA-PTADEIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKA 66
Query: 177 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 226
T+NP ++E F ++ D+ + L + V D D+ +DF+G F ++ L
Sbjct: 67 TLNPVWNETFVF-NLKPGDVE-RRLSVEVWDWDRTSRNDFMGAMSFGVSEL 115
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 258 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVK 316
+ G+I+L + +K L V + NLIP D NG SDP++KL L PD ++ K KT
Sbjct: 5 KRGRIYLKAEVADEK--LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTI 62
Query: 317 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCC 365
TLNP +NE F + K ++ ++ L + +WD D ND+ G L
Sbjct: 63 RSTLNPQWNESFTFKLKPSDKDRR-LSVEIWDWDRTTRNDFXGSLSFGV 110
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTF-YS 190
LHVT+ AK L D +G SDP+ KL L+P K + +TKT T+NP+++E TF
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 191 VSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 226
S+ D + L + + D D+ +DF G F ++ L
Sbjct: 80 PSDKD---RRLSVEIWDWDRTTRNDFXGSLSFGVSEL 113
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 258 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVK 316
+ G+I++ + LIV + NL+PMD NG SDP++KL L PD + K KT
Sbjct: 159 RRGRIYIQA--HIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTI 216
Query: 317 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 363
+LNP +NE F + K ++ ++ L + +WD D ND++G L
Sbjct: 217 KSSLNPEWNETFRFQLKESDKDRR-LSVEIWDWDLTSRNDFMGSLSF 262
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
L V + AK L MD +G SDP+ KL L+P K+ + +TKT ++NPE++E F +
Sbjct: 174 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRF-QL 232
Query: 192 SETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLR 227
E+D + L + + D D +DF+G F ++ L+
Sbjct: 233 KESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQ 268
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 59/106 (55%), Gaps = 4/106 (3%)
Query: 121 LTVTYDSTTCSLHVTLHRAKGLRAMDIHG-TSDPFCKLNLVPLTKTSHRLRTKTCLRTIN 179
++ Y+ + V + A+GL AMD TSDP+ K+ ++P K H+++T+ +T++
Sbjct: 13 FSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKK--HKVKTRVLRKTLD 70
Query: 180 PEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLN 224
P F E TFY + T + +LH +L D++ D +GE PL+
Sbjct: 71 PAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLS 116
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 56/103 (54%), Gaps = 9/103 (8%)
Query: 262 IFLTLCFSTKKRALIVNLIKCTNLIPMDSNGF-SDPFIKLYLKPDLHKRKYKTGVKWKTL 320
+F +L ++ +++A +VN+ + L MD SDP+IK+ + P+ K K KT V KTL
Sbjct: 11 LFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE-KKHKVKTRVLRKTL 69
Query: 321 NPIFNEEFAI----ETKITELSKQTLVITVWDKDYGKSNDYLG 359
+P F+E F T+I EL+ L T+ D +D +G
Sbjct: 70 DPAFDETFTFYGIPYTQIQELA---LHFTILSFDRFSRDDIIG 109
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 4/105 (3%)
Query: 258 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVK 316
+ G+I++ + LIV + NL+PMD NG SDP++KL L PD + K KT
Sbjct: 18 RRGRIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTI 75
Query: 317 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCL 361
+LNP +NE F + K ++ ++ L + +WD D ND++G L
Sbjct: 76 KCSLNPEWNETFRFQLKESDKDRR-LSVEIWDWDLTSRNDFMGSL 119
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 3/97 (3%)
Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
L V + AK L MD +G SDP+ KL L+P K+ + +TKT ++NPE++E F +
Sbjct: 33 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF-QL 91
Query: 192 SETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLR 227
E+D + L + + D D +DF+G F ++ L+
Sbjct: 92 KESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQ 127
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWK 318
G+I LT+ S+++ LIV + C NLI +G SDP++++YL PD + + KT V K
Sbjct: 11 GQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKK 69
Query: 319 TLNPIFNEEFAIETKITELSKQTLVITV 346
TLNP+F++ F + E+ ++TL + V
Sbjct: 70 TLNPVFDQSFDFSVSLPEVQRRTLDVAV 97
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
LG I+LT+ + S L V +H + L A G SDP+ ++ L+P + S R +T
Sbjct: 10 LGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSK 68
Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILV 205
+T+NP F + F SVS ++ ++L + V
Sbjct: 69 KTLNPVFDQSFDF-SVSLPEVQRRTLDVAV 97
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 318
G++ ++LC+ + L V ++K +L D +G SDP++K+ L + K KT VK
Sbjct: 17 GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC 76
Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 378
T N +FNE F + L + ++ V D + G N+ +G L L ++G HW ++
Sbjct: 77 TPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEI 136
Query: 379 MKYPDHKHEGIHNL 392
+P + H L
Sbjct: 137 CDFPRRQIAKWHML 150
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
G + +++ Y STT +L V + +A+ L D+ G SDP+ K+NL K + +T
Sbjct: 17 GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC 76
Query: 177 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK 210
T N F+E F E+ L S+ LVLD ++
Sbjct: 77 TPNAVFNELFVFDIPCES-LEEISVEFLVLDSER 109
>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
pdb|3FDW|B Chain B, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
Length = 148
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKR-KYKTGVKW 317
G+I +L + + ++L+V++ +C L D + S+P++K YL PD ++ K KT +K
Sbjct: 10 GRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR 69
Query: 318 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS 367
T+NP+++E E + L+++TL +VW N +LG E+ +S
Sbjct: 70 DTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDS 119
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
G I ++ Y+ T SL V + L D S+P+ K L+P + +T
Sbjct: 10 GRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR 69
Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLRPHISRDL 234
T+NP + E L Y + E+ L+ ++L V ++G + FLGEA ++ + D
Sbjct: 70 DTVNPLYDETLR-YEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDH 128
Query: 235 CLNL 238
CL L
Sbjct: 129 CLPL 132
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
L V + +A L A D G SDPFC L L + RL+T T + +NPE+++ TF
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLEL-----GNDRLQTHTVYKNLNPEWNKVFTFPIK 69
Query: 192 SETDLSLQSLHILVLDDD-KYGHDFLGEARFPLNRLR 227
D+ L + V D+D DFLG+ PL +R
Sbjct: 70 DIHDV----LEVTVFDEDGDKPPDFLGKVAIPLLSIR 102
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
L V ++K +L+ D +G SDPF L L D + +T +K LNP +N+ F K
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGND----RLQTHTVYKNLNPEWNKVFTFPIKD 70
Query: 335 TELSKQTLVITVWDKDYGKSNDYLG 359
L +TV+D+D K D+LG
Sbjct: 71 IH---DVLEVTVFDEDGDKPPDFLG 92
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 257 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-------GFSDPFIKLYLKPDLHKR 309
+Q G + + + L V +I+ +L P S+ S+P++K+ L PD K
Sbjct: 10 YQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPD-QKN 68
Query: 310 KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 350
+TGVK KT P+F E + E E ++TL++TV D D
Sbjct: 69 SKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFD 109
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 14/127 (11%)
Query: 125 YDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLV-PLTKTSHRLRTKTCLRTINPEFH 183
++ T + V + GL DI G SDP+ ++ L P++ ++TKT +++NP+++
Sbjct: 3 HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWN 62
Query: 184 EKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL--------RPHISRDL 234
E++ F + + + V D+++ DFLG+ PL L RP+ +D
Sbjct: 63 EEILFRVLPQR----HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDF 118
Query: 235 CLNLCKH 241
L+ H
Sbjct: 119 VLHPRSH 125
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 16/140 (11%)
Query: 114 TNLGSIELTVTYDSTTCS-LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHR--LR 170
T LG ++ D L V + L DI G SDP+ KL+L + ++
Sbjct: 4 TGLGEPVYGLSEDEGESRILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQ 63
Query: 171 TKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL--- 226
TKT +T+NP+++E+ F + S L V D+++ DFLG+ PL+ L
Sbjct: 64 TKTIKKTLNPKWNEEFYF----RVNPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTE 119
Query: 227 -----RPHISRDLCLNLCKH 241
RP+ +D L H
Sbjct: 120 DPTMERPYTFKDFLLRPRSH 139
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRK---YKTGVKWKTLNPIFNEEFA 329
R L V ++ +L D G SDP++KL L R+ +T KTLNP +NEEF
Sbjct: 21 RILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFY 80
Query: 330 IETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 363
S L+ V+D++ +D+LG +++
Sbjct: 81 FRVNP---SNHRLLFEVFDENRLTRDDFLGQVDV 111
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 14/111 (12%)
Query: 141 GLRAMDIHGTSDPFCKLNLV-PLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQ 199
GL DI G SDP+ ++ L P+ ++TKT +++NP+++E++ F +
Sbjct: 31 GLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQ----H 86
Query: 200 SLHILVLDDDKYGH-DFLGEARFPLNRL--------RPHISRDLCLNLCKH 241
L V D+++ DFLG+ PL L RP+ +D L+ H
Sbjct: 87 RLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSH 137
>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
pdb|2B3R|B Chain B, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
Length = 134
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
G+++L+V+Y + T L + + K L D +P+ K L+P T + + +TK +
Sbjct: 9 GAVKLSVSYRNGT--LFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRK 65
Query: 177 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPL 223
T NP F+E L + S+ L + L + VL + + FLG PL
Sbjct: 66 TRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPL 113
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 318
G + L S + L + ++ +L+ D +P++K YL PD HK K KT + K
Sbjct: 7 GSGAVKLSVSYRNGTLFIMVMHIKDLVTEDGAD-PNPYVKTYLLPDTHKTSKRKTKISRK 65
Query: 319 TLNPIFNEEFAIETKITE-LSKQTLVITVWDKDYGKSNDYLGCLEL 363
T NP FNE E L ++ L ++V + + N +LG + L
Sbjct: 66 TRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITL 111
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
G + + + +D L VT+ AK L + + +P+ K+ +P ++ RTKT +
Sbjct: 5 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 64
Query: 177 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH---DFLGE 218
T+ P++++ + V + + L I + D + +FLGE
Sbjct: 65 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGE 109
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL---HKRKYKTGVK 316
G++ + L F LIV ++ +L + +P++K+Y PD +KR+ KT VK
Sbjct: 5 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKT-VK 63
Query: 317 WKTLNPIFNEEFAIE-TKITELSKQTLVITVWDK 349
KTL P +N+ F E ++ L IT+WD+
Sbjct: 64 -KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ 96
>pdb|3NSJ|A Chain A, The X-Ray Crystal Structure Of Lymphocyte Perforin
Length = 540
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 301 YLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG 359
YLK ++++TGV W NP + ++ E + + L + VWD DYG +D LG
Sbjct: 417 YLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLS-TGGPLRVQVWDADYGWDDDLLG 474
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
L+V++I+ T L NG S+P+ ++ + + Y T TLNP +N F + I
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEI----SMGSQSYTTRTIQDTLNPKWN--FNCQFFI 442
Query: 335 TELSKQTLVITVWDKDYGKSNDYLGCLEL 363
+L + L +T++D+D +D+LG E+
Sbjct: 443 KDLYQDVLCLTLFDRDQFSPDDFLGRTEI 471
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 22/126 (17%)
Query: 103 EKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPL 162
EK Y SQ + +G L V + A L+A +G S+P+C++++
Sbjct: 373 EKAYQARSQKTSGIGR-------------LMVHVIEATELKACKPNGKSNPYCEISM--- 416
Query: 163 TKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARF 221
S T+T T+NP+++ F+ DL L + + D D++ DFLG
Sbjct: 417 --GSQSYTTRTIQDTLNPKWNFNCQFFI---KDLYQDVLCLTLFDRDQFSPDDFLGRTEI 471
Query: 222 PLNRLR 227
P+ ++R
Sbjct: 472 PVAKIR 477
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 23/125 (18%)
Query: 129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTF 188
+ + +T+ A+GL+A D G+SDP+ + + K RTKT +NP + E F
Sbjct: 16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKK-----RTKTIYGNLNPVWEENFHF 70
Query: 189 YSVSETDLSLQSLHILVLDDD------------KYGHDFLGEARFPLNRLRPHISRDLCL 236
+ +D + + VLD+D + DFLG+ + L + D+
Sbjct: 71 ECHNSSD----RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEM--DVWY 124
Query: 237 NLCKH 241
NL K
Sbjct: 125 NLDKR 129
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 277 VNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE 331
+ ++ L D G SDP++ + + K K +T + LNP++ E F E
Sbjct: 21 ITVVCAQGLQAKDKTGSSDPYVTVQV----GKTKKRTKTIYGNLNPVWEENFHFE 71
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 261 KIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL-HKRKYKTGVKWKT 319
++ + L F LIV ++ +L + +P++K+Y PD K K +T KT
Sbjct: 9 QLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKT 68
Query: 320 LNPIFNEEFAIE-TKITELSKQTLVITVWDK 349
L P +N+ F E ++ L IT+WD+
Sbjct: 69 LEPKWNQTFIYSPVHRREFRERMLEITLWDQ 99
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 118 SIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRT 177
+ + + +D L VT+ AK L + + +P+ K+ +P ++ RTKT +T
Sbjct: 9 QLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKT 68
Query: 178 INPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH---DFLGE 218
+ P++++ + V + + L I + D + +FLGE
Sbjct: 69 LEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGE 112
>pdb|3FBK|A Chain A, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
pdb|3FBK|B Chain B, Crystal Structure Of The C2 Domain Of The Human Regulator
Of G-Protein Signaling 3 Isoform 6 (Rgp3), Northeast
Structural Genomics Consortium Target Hr5550a
Length = 153
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
G+ +L ++ D+ L + + KGL + GT DP+ K++L+P +T+T
Sbjct: 14 GAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPD 72
Query: 177 TINPEFHEKLTFYSVSETD 195
+P FHE F+ V E D
Sbjct: 73 CRDPAFHEHF-FFPVQEED 90
>pdb|3T5D|A Chain A, Crystal Structure Of Septin 7 In Complex With Gdp
pdb|3T5D|C Chain C, Crystal Structure Of Septin 7 In Complex With Gdp
Length = 274
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 126 DSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL---RTINPEF 182
+ C L+ GL+ +DI K+N++PL + L + C + I E
Sbjct: 114 NRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEI 173
Query: 183 HE-KLTFYSVSETD 195
E K+ Y ETD
Sbjct: 174 QEHKIKIYEFPETD 187
>pdb|3TW4|A Chain A, Crystal Structure Of Human Septin 7 Gtpase Domain
pdb|3TW4|B Chain B, Crystal Structure Of Human Septin 7 Gtpase Domain
Length = 271
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 126 DSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL---RTINPEF 182
+ C L+ GL+ +DI K+N++PL + L + C + I E
Sbjct: 109 NRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEI 168
Query: 183 HE-KLTFYSVSETD 195
E K+ Y ETD
Sbjct: 169 QEHKIKIYEFPETD 182
>pdb|2Q3X|A Chain A, The Rim1alpha C2b Domain
pdb|2Q3X|B Chain B, The Rim1alpha C2b Domain
Length = 171
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 271 KKRALIVNLIKCTNLIPM-DSNGFSDPFIKLYL-KPDLHKRKYKTGVKWKTLNPIFNEEF 328
KK L V +I+ +L S P++K+YL + K KT + KTL+P++ +
Sbjct: 28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSL 87
Query: 329 AIETKITELSKQTLVITVWDKDYGKSN 355
+ + L + VW DYG+ +
Sbjct: 88 VFD---ESPQGKVLQVIVWG-DYGRXD 110
>pdb|2QAG|C Chain C, Crystal Structure Of Human Septin Trimer 267
Length = 418
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 126 DSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL---RTINPEF 182
+ C L+ GL+ +DI K+N++PL + L + C + I E
Sbjct: 137 NRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEI 196
Query: 183 HE-KLTFYSVSETD 195
E K+ Y ETD
Sbjct: 197 QEHKIKIYEFPETD 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,864,115
Number of Sequences: 62578
Number of extensions: 474258
Number of successful extensions: 1008
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 870
Number of HSP's gapped (non-prelim): 82
length of query: 399
length of database: 14,973,337
effective HSP length: 101
effective length of query: 298
effective length of database: 8,652,959
effective search space: 2578581782
effective search space used: 2578581782
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)