Query psy12136
Match_columns 399
No_of_seqs 381 out of 2194
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 19:38:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12136.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12136hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1028|consensus 100.0 1E-48 2.2E-53 380.4 28.2 270 112-394 149-420 (421)
2 cd08407 C2B_Synaptotagmin-13 C 100.0 1.4E-32 3.1E-37 227.3 14.8 135 259-393 1-138 (138)
3 cd08692 C2B_Tac2-N C2 domain s 100.0 1.6E-31 3.4E-36 217.7 15.1 131 261-392 2-135 (135)
4 cd08406 C2B_Synaptotagmin-12 C 100.0 1.5E-31 3.2E-36 221.4 14.9 135 259-393 1-136 (136)
5 KOG1013|consensus 100.0 1.3E-31 2.9E-36 240.2 4.4 281 112-396 75-357 (362)
6 cd08408 C2B_Synaptotagmin-14_1 100.0 3.4E-29 7.4E-34 208.3 14.6 134 260-393 2-138 (138)
7 cd08409 C2B_Synaptotagmin-15 C 100.0 4.5E-29 9.8E-34 207.8 14.8 133 259-392 1-136 (137)
8 cd08402 C2B_Synaptotagmin-1 C2 100.0 1.3E-28 2.8E-33 205.3 15.4 135 259-393 1-136 (136)
9 cd08410 C2B_Synaptotagmin-17 C 100.0 4.4E-28 9.5E-33 201.5 14.6 133 260-392 1-135 (135)
10 cd08405 C2B_Synaptotagmin-7 C2 100.0 5.9E-28 1.3E-32 201.3 14.8 135 259-393 1-136 (136)
11 cd08384 C2B_Rabphilin_Doc2 C2 100.0 7.3E-28 1.6E-32 200.0 14.4 132 261-392 1-133 (133)
12 cd08403 C2B_Synaptotagmin-3-5- 100.0 1.6E-27 3.5E-32 198.2 14.8 133 260-392 1-134 (134)
13 cd08404 C2B_Synaptotagmin-4 C2 100.0 2.2E-27 4.7E-32 197.9 15.2 135 259-393 1-136 (136)
14 cd08677 C2A_Synaptotagmin-13 C 99.9 7.5E-27 1.6E-31 185.8 13.0 116 260-378 1-118 (118)
15 cd08677 C2A_Synaptotagmin-13 C 99.9 1.2E-26 2.6E-31 184.6 13.3 116 117-237 1-117 (118)
16 cd00276 C2B_Synaptotagmin C2 d 99.9 4.8E-26 1E-30 189.4 15.2 133 260-392 1-134 (134)
17 cd08393 C2A_SLP-1_2 C2 domain 99.9 5E-26 1.1E-30 186.5 14.5 122 116-238 1-124 (125)
18 cd08392 C2A_SLP-3 C2 domain fi 99.9 3.3E-25 7.3E-30 181.8 14.7 122 116-238 1-127 (128)
19 cd04029 C2A_SLP-4_5 C2 domain 99.9 4.4E-25 9.4E-30 180.8 14.9 123 116-239 1-125 (125)
20 cd08381 C2B_PI3K_class_II C2 d 99.9 3.8E-25 8.3E-30 180.3 14.4 119 117-238 2-121 (122)
21 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.9 6.9E-25 1.5E-29 187.4 15.2 135 259-393 1-162 (162)
22 cd08680 C2_Kibra C2 domain fou 99.9 5.1E-25 1.1E-29 179.2 13.4 119 118-237 2-123 (124)
23 KOG2059|consensus 99.9 3.1E-25 6.7E-30 216.1 14.2 236 129-397 4-256 (800)
24 cd08389 C2A_Synaptotagmin-14_1 99.9 1.3E-24 2.7E-29 177.9 14.6 122 115-239 1-123 (124)
25 cd08393 C2A_SLP-1_2 C2 domain 99.9 1.2E-24 2.7E-29 178.3 14.0 123 259-393 1-125 (125)
26 cd04029 C2A_SLP-4_5 C2 domain 99.9 2.1E-24 4.5E-29 176.8 14.7 123 259-393 1-125 (125)
27 cd08392 C2A_SLP-3 C2 domain fi 99.9 2.3E-24 5.1E-29 176.8 14.4 125 259-392 1-127 (128)
28 cd04028 C2B_RIM1alpha C2 domai 99.9 6.6E-24 1.4E-28 176.8 15.7 122 113-240 14-138 (146)
29 cd08388 C2A_Synaptotagmin-4-11 99.9 8.7E-24 1.9E-28 173.8 15.6 122 116-239 2-127 (128)
30 cd08680 C2_Kibra C2 domain fou 99.9 4.4E-24 9.4E-29 173.7 12.7 117 261-377 2-123 (124)
31 cd08406 C2B_Synaptotagmin-12 C 99.9 4.8E-24 1E-28 176.5 12.7 110 116-226 1-111 (136)
32 cd08407 C2B_Synaptotagmin-13 C 99.9 5.2E-24 1.1E-28 176.2 12.6 120 116-238 1-123 (138)
33 cd08381 C2B_PI3K_class_II C2 d 99.9 1.1E-23 2.5E-28 171.7 14.1 108 259-369 1-110 (122)
34 cd04028 C2B_RIM1alpha C2 domai 99.9 2.6E-23 5.6E-28 173.2 15.8 124 257-397 15-141 (146)
35 cd08385 C2A_Synaptotagmin-1-5- 99.9 2.1E-23 4.5E-28 171.1 14.9 122 115-239 1-123 (124)
36 cd08387 C2A_Synaptotagmin-8 C2 99.9 2.2E-23 4.7E-28 171.0 14.7 121 116-239 2-123 (124)
37 cd04030 C2C_KIAA1228 C2 domain 99.9 5E-23 1.1E-27 169.6 15.3 122 116-238 2-126 (127)
38 cd08521 C2A_SLP C2 domain firs 99.9 4.9E-23 1.1E-27 168.6 14.6 121 117-238 1-123 (123)
39 cd08685 C2_RGS-like C2 domain 99.9 4.7E-23 1E-27 167.1 13.5 117 117-238 1-119 (119)
40 cd04031 C2A_RIM1alpha C2 domai 99.9 9.5E-23 2.1E-27 167.4 14.6 123 116-239 2-125 (125)
41 cd08386 C2A_Synaptotagmin-7 C2 99.9 1.1E-22 2.3E-27 167.1 14.4 122 116-239 2-124 (125)
42 cd08388 C2A_Synaptotagmin-4-11 99.9 2.9E-22 6.2E-27 164.8 15.3 125 259-394 2-128 (128)
43 cd08389 C2A_Synaptotagmin-14_1 99.9 1.8E-22 3.8E-27 165.2 14.0 122 259-394 2-124 (124)
44 cd08387 C2A_Synaptotagmin-8 C2 99.9 2.6E-22 5.7E-27 164.5 14.7 122 259-393 2-123 (124)
45 cd08390 C2A_Synaptotagmin-15-1 99.9 2.6E-22 5.6E-27 164.3 14.4 120 117-239 1-122 (123)
46 cd08409 C2B_Synaptotagmin-15 C 99.9 8.7E-23 1.9E-27 169.9 10.4 122 116-239 1-123 (137)
47 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.9 3.3E-22 7.1E-27 170.9 14.2 124 116-239 1-137 (162)
48 cd08385 C2A_Synaptotagmin-1-5- 99.9 2.6E-22 5.6E-27 164.6 12.8 119 259-378 2-122 (124)
49 cd04030 C2C_KIAA1228 C2 domain 99.9 6.8E-22 1.5E-26 162.8 15.0 110 259-368 2-114 (127)
50 cd08521 C2A_SLP C2 domain firs 99.9 7.6E-22 1.6E-26 161.6 14.1 109 260-368 1-111 (123)
51 cd08685 C2_RGS-like C2 domain 99.9 6.4E-22 1.4E-26 160.4 13.4 105 260-368 1-107 (119)
52 cd08408 C2B_Synaptotagmin-14_1 99.9 8.1E-22 1.7E-26 164.0 12.6 110 117-227 2-113 (138)
53 cd04031 C2A_RIM1alpha C2 domai 99.9 1.1E-21 2.3E-26 161.2 12.5 109 259-367 2-112 (125)
54 cd04035 C2A_Rabphilin_Doc2 C2 99.9 2.3E-21 5E-26 158.7 14.5 123 116-238 1-123 (123)
55 cd08404 C2B_Synaptotagmin-4 C2 99.9 6.1E-22 1.3E-26 165.0 11.1 121 116-239 1-122 (136)
56 cd08386 C2A_Synaptotagmin-7 C2 99.9 3.2E-21 6.9E-26 158.3 14.4 123 259-394 2-125 (125)
57 cd08405 C2B_Synaptotagmin-7 C2 99.9 1E-21 2.2E-26 163.7 10.7 110 116-226 1-111 (136)
58 cd08692 C2B_Tac2-N C2 domain s 99.9 3.3E-21 7.1E-26 157.2 12.9 107 118-226 2-110 (135)
59 cd08390 C2A_Synaptotagmin-15-1 99.9 6.4E-21 1.4E-25 156.1 14.5 122 260-394 1-123 (123)
60 cd08395 C2C_Munc13 C2 domain t 99.9 5.2E-21 1.1E-25 154.3 12.8 109 131-241 1-113 (120)
61 cd08402 C2B_Synaptotagmin-1 C2 99.9 5E-21 1.1E-25 159.5 12.7 110 116-226 1-111 (136)
62 cd08384 C2B_Rabphilin_Doc2 C2 99.9 4.2E-21 9.1E-26 159.4 11.8 119 118-239 1-120 (133)
63 cd04016 C2_Tollip C2 domain pr 99.9 1.1E-20 2.3E-25 152.9 13.9 117 130-268 2-121 (121)
64 cd08410 C2B_Synaptotagmin-17 C 99.9 8.2E-21 1.8E-25 157.8 13.2 110 117-227 1-111 (135)
65 cd08403 C2B_Synaptotagmin-3-5- 99.8 1E-20 2.2E-25 157.3 12.7 119 117-238 1-120 (134)
66 cd08395 C2C_Munc13 C2 domain t 99.8 1.8E-20 3.9E-25 151.2 13.1 109 274-395 1-113 (120)
67 cd04010 C2B_RasA3 C2 domain se 99.8 1.5E-20 3.3E-25 157.5 13.2 132 131-266 1-147 (148)
68 cd08682 C2_Rab11-FIP_classI C2 99.8 1.7E-20 3.8E-25 154.1 13.2 119 132-266 1-125 (126)
69 KOG0696|consensus 99.8 3.3E-21 7.1E-26 179.0 8.6 131 248-381 157-289 (683)
70 cd04009 C2B_Munc13-like C2 dom 99.8 5E-20 1.1E-24 152.8 14.1 114 115-229 1-119 (133)
71 cd00276 C2B_Synaptotagmin C2 d 99.8 1.9E-20 4E-25 155.7 10.6 121 117-240 1-122 (134)
72 cd04022 C2A_MCTP_PRT_plant C2 99.8 5.9E-20 1.3E-24 151.1 13.2 121 131-268 1-125 (127)
73 cd04042 C2A_MCTP_PRT C2 domain 99.8 1E-19 2.2E-24 148.4 13.9 120 131-270 1-121 (121)
74 cd08682 C2_Rab11-FIP_classI C2 99.8 1.2E-19 2.6E-24 149.1 12.3 107 275-395 1-110 (126)
75 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 3.5E-19 7.6E-24 145.0 13.7 118 132-268 2-121 (121)
76 cd04010 C2B_RasA3 C2 domain se 99.8 2.1E-19 4.6E-24 150.6 12.5 94 274-369 1-108 (148)
77 cd04009 C2B_Munc13-like C2 dom 99.8 3.4E-19 7.3E-24 147.8 13.2 110 259-368 2-116 (133)
78 cd04035 C2A_Rabphilin_Doc2 C2 99.8 4E-19 8.7E-24 145.4 12.9 117 259-376 1-119 (123)
79 cd04036 C2_cPLA2 C2 domain pre 99.8 5.8E-19 1.3E-23 143.6 13.5 116 132-268 2-117 (119)
80 cd08681 C2_fungal_Inn1p-like C 99.8 4.7E-19 1E-23 143.9 12.8 117 130-268 1-118 (118)
81 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 6.6E-19 1.4E-23 144.1 13.6 121 131-266 1-122 (123)
82 cd08376 C2B_MCTP_PRT C2 domain 99.8 7.8E-19 1.7E-23 142.1 13.7 113 132-269 2-115 (116)
83 cd04026 C2_PKC_alpha_gamma C2 99.8 8.4E-19 1.8E-23 145.1 13.8 120 116-240 1-121 (131)
84 cd08379 C2D_MCTP_PRT_plant C2 99.8 1E-18 2.2E-23 142.3 13.1 100 132-240 2-111 (126)
85 KOG0696|consensus 99.8 6.3E-20 1.4E-24 170.5 6.6 114 112-229 164-278 (683)
86 KOG1028|consensus 99.8 5.8E-19 1.3E-23 172.3 13.4 156 49-225 237-393 (421)
87 cd04019 C2C_MCTP_PRT_plant C2 99.8 1.6E-18 3.4E-23 146.1 14.3 130 131-273 1-136 (150)
88 cd08400 C2_Ras_p21A1 C2 domain 99.8 2.2E-18 4.8E-23 141.4 14.3 121 130-271 4-125 (126)
89 cd08375 C2_Intersectin C2 doma 99.8 1.8E-18 3.9E-23 143.5 13.7 117 129-269 14-136 (136)
90 cd08678 C2_C21orf25-like C2 do 99.8 3E-18 6.6E-23 140.7 14.0 122 132-272 1-123 (126)
91 KOG1328|consensus 99.8 5.2E-20 1.1E-24 179.7 3.9 96 272-367 946-1046(1103)
92 cd04026 C2_PKC_alpha_gamma C2 99.8 2E-18 4.3E-23 142.9 12.2 107 259-368 1-108 (131)
93 COG5038 Ca2+-dependent lipid-b 99.8 1.1E-17 2.4E-22 172.2 20.0 239 125-376 706-1139(1227)
94 cd08378 C2B_MCTP_PRT_plant C2 99.8 2.9E-18 6.3E-23 139.5 12.6 113 132-268 2-119 (121)
95 cd04016 C2_Tollip C2 domain pr 99.8 3.2E-18 7E-23 138.4 12.5 100 273-380 2-105 (121)
96 cd04015 C2_plant_PLD C2 domain 99.8 4.6E-18 1E-22 144.7 14.2 122 129-268 6-157 (158)
97 cd08688 C2_KIAA0528-like C2 do 99.8 9.5E-19 2.1E-23 140.1 9.1 107 275-394 1-109 (110)
98 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 4.7E-18 1E-22 141.0 13.4 122 132-268 2-132 (133)
99 cd04019 C2C_MCTP_PRT_plant C2 99.8 3.4E-18 7.4E-23 144.1 12.3 108 274-395 1-109 (150)
100 cd08379 C2D_MCTP_PRT_plant C2 99.8 3.9E-18 8.4E-23 138.9 12.0 99 274-379 1-110 (126)
101 cd04024 C2A_Synaptotagmin-like 99.8 8.8E-18 1.9E-22 138.4 14.0 122 130-268 1-128 (128)
102 cd04050 C2B_Synaptotagmin-like 99.8 5.4E-18 1.2E-22 134.6 11.6 103 275-396 2-104 (105)
103 cd08688 C2_KIAA0528-like C2 do 99.8 3.8E-18 8.1E-23 136.7 10.5 102 132-239 1-108 (110)
104 cd04022 C2A_MCTP_PRT_plant C2 99.8 5E-18 1.1E-22 139.7 11.5 91 274-368 1-93 (127)
105 cd04018 C2C_Ferlin C2 domain t 99.8 3.9E-18 8.5E-23 143.2 10.9 106 274-384 1-129 (151)
106 cd04041 C2A_fungal C2 domain f 99.8 3.3E-18 7.3E-23 137.2 10.0 94 273-367 1-96 (111)
107 cd08376 C2B_MCTP_PRT C2 domain 99.8 1.1E-17 2.4E-22 135.4 13.0 103 275-395 2-104 (116)
108 cd04041 C2A_fungal C2 domain f 99.8 3.8E-18 8.3E-23 136.8 10.0 95 130-227 1-98 (111)
109 KOG1030|consensus 99.8 3.8E-18 8.2E-23 141.1 9.6 97 129-234 5-102 (168)
110 cd04011 C2B_Ferlin C2 domain s 99.8 8.3E-18 1.8E-22 134.9 10.9 108 270-394 1-110 (111)
111 cd08391 C2A_C2C_Synaptotagmin_ 99.7 2.1E-17 4.5E-22 134.8 12.9 115 130-268 1-121 (121)
112 cd08690 C2_Freud-1 C2 domain f 99.7 4.6E-17 9.9E-22 136.7 15.2 125 132-270 4-138 (155)
113 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 2.3E-17 5E-22 134.4 13.0 117 132-267 2-120 (121)
114 cd08401 C2A_RasA2_RasA3 C2 dom 99.7 2.1E-17 4.6E-22 134.5 12.6 103 275-395 2-105 (121)
115 cd04046 C2_Calpain C2 domain p 99.7 4.9E-17 1.1E-21 133.5 14.9 121 130-270 3-123 (126)
116 KOG1030|consensus 99.7 8.5E-18 1.9E-22 139.0 10.3 98 272-376 5-102 (168)
117 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 2E-17 4.3E-22 135.3 12.4 89 274-368 1-89 (123)
118 cd08375 C2_Intersectin C2 doma 99.7 2.5E-17 5.3E-22 136.7 12.7 114 269-395 11-124 (136)
119 cd04043 C2_Munc13_fungal C2 do 99.7 5.6E-17 1.2E-21 133.2 14.3 116 131-269 2-121 (126)
120 cd04036 C2_cPLA2 C2 domain pre 99.7 2.8E-17 6.2E-22 133.6 12.3 105 275-395 2-106 (119)
121 cd08373 C2A_Ferlin C2 domain f 99.7 5.1E-17 1.1E-21 133.6 13.9 118 136-273 2-120 (127)
122 cd04017 C2D_Ferlin C2 domain f 99.7 5.4E-17 1.2E-21 134.9 13.9 121 131-270 2-133 (135)
123 cd04042 C2A_MCTP_PRT C2 domain 99.7 3.4E-17 7.3E-22 133.5 12.4 100 274-379 1-102 (121)
124 cd04039 C2_PSD C2 domain prese 99.7 1.9E-17 4.1E-22 131.8 10.6 94 130-230 1-99 (108)
125 cd04039 C2_PSD C2 domain prese 99.7 2.1E-17 4.6E-22 131.5 10.5 90 273-367 1-94 (108)
126 cd04014 C2_PKC_epsilon C2 doma 99.7 5.3E-17 1.2E-21 134.5 13.4 114 130-270 4-130 (132)
127 cd08377 C2C_MCTP_PRT C2 domain 99.7 7.8E-17 1.7E-21 131.0 14.0 117 130-268 1-118 (119)
128 cd08675 C2B_RasGAP C2 domain s 99.7 3.8E-17 8.2E-22 135.9 11.8 106 132-240 1-120 (137)
129 cd04050 C2B_Synaptotagmin-like 99.7 4.7E-17 1E-21 129.2 11.4 99 132-240 2-102 (105)
130 cd08681 C2_fungal_Inn1p-like C 99.7 3.3E-17 7.1E-22 133.0 10.3 101 273-380 1-104 (118)
131 cd08675 C2B_RasGAP C2 domain s 99.7 7.4E-17 1.6E-21 134.1 12.5 109 275-396 1-122 (137)
132 cd04037 C2E_Ferlin C2 domain f 99.7 9.5E-17 2.1E-21 131.3 12.9 107 275-386 2-108 (124)
133 cd04017 C2D_Ferlin C2 domain f 99.7 8.5E-17 1.8E-21 133.7 12.7 112 273-396 1-119 (135)
134 cd04044 C2A_Tricalbin-like C2 99.7 8.4E-17 1.8E-21 131.8 12.3 120 130-270 2-124 (124)
135 cd08382 C2_Smurf-like C2 domai 99.7 1.3E-16 2.9E-21 130.3 13.3 117 132-266 2-122 (123)
136 cd08378 C2B_MCTP_PRT_plant C2 99.7 6.7E-17 1.5E-21 131.5 11.4 84 274-368 1-84 (121)
137 cd04027 C2B_Munc13 C2 domain s 99.7 1.3E-16 2.7E-21 131.2 13.1 114 131-266 2-127 (127)
138 cd08676 C2A_Munc13-like C2 dom 99.7 4.4E-17 9.6E-22 137.0 10.1 104 267-376 22-151 (153)
139 cd04011 C2B_Ferlin C2 domain s 99.7 7.1E-17 1.5E-21 129.5 10.8 103 128-239 2-109 (111)
140 cd08678 C2_C21orf25-like C2 do 99.7 1.3E-16 2.9E-21 131.0 12.2 86 275-367 1-86 (126)
141 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 1.3E-16 2.8E-21 130.0 12.0 87 275-367 2-88 (121)
142 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 1.3E-16 2.8E-21 132.4 12.2 92 274-368 1-95 (133)
143 cd08394 C2A_Munc13 C2 domain f 99.7 1.1E-16 2.3E-21 128.8 11.0 102 272-395 1-102 (127)
144 cd08690 C2_Freud-1 C2 domain f 99.7 1.1E-16 2.4E-21 134.4 11.4 106 275-380 4-121 (155)
145 cd04024 C2A_Synaptotagmin-like 99.7 1.8E-16 3.9E-21 130.5 11.8 89 273-367 1-91 (128)
146 cd08377 C2C_MCTP_PRT C2 domain 99.7 1.6E-16 3.4E-21 129.2 11.2 100 273-379 1-100 (119)
147 COG5038 Ca2+-dependent lipid-b 99.7 1.1E-15 2.3E-20 157.8 19.4 223 130-367 436-799 (1227)
148 cd08691 C2_NEDL1-like C2 domai 99.7 6.3E-16 1.4E-20 127.9 14.2 119 131-266 2-136 (137)
149 cd08676 C2A_Munc13-like C2 dom 99.7 1.6E-16 3.4E-21 133.7 10.5 107 125-238 23-153 (153)
150 cd04038 C2_ArfGAP C2 domain pr 99.7 3.3E-16 7.1E-21 131.0 12.2 111 273-392 2-113 (145)
151 cd04015 C2_plant_PLD C2 domain 99.7 2.1E-16 4.6E-21 134.5 10.8 104 273-383 7-142 (158)
152 cd08383 C2A_RasGAP C2 domain ( 99.7 6.8E-16 1.5E-20 125.0 13.3 115 132-268 2-117 (117)
153 cd08394 C2A_Munc13 C2 domain f 99.7 3.7E-16 8.1E-21 125.7 11.5 97 130-239 2-100 (127)
154 cd04018 C2C_Ferlin C2 domain t 99.7 2.5E-16 5.4E-21 132.3 10.9 93 131-230 1-108 (151)
155 cd04027 C2B_Munc13 C2 domain s 99.7 2.8E-16 6E-21 129.2 11.0 102 273-381 1-113 (127)
156 cd04032 C2_Perforin C2 domain 99.7 3.9E-16 8.4E-21 127.3 11.1 93 271-369 26-118 (127)
157 cd08391 C2A_C2C_Synaptotagmin_ 99.7 2.9E-16 6.3E-21 128.0 10.3 89 273-368 1-95 (121)
158 cd08400 C2_Ras_p21A1 C2 domain 99.7 7.7E-16 1.7E-20 126.3 12.7 98 273-379 4-103 (126)
159 cd04043 C2_Munc13_fungal C2 do 99.7 1.3E-15 2.8E-20 125.1 13.9 91 274-367 2-92 (126)
160 cd04045 C2C_Tricalbin-like C2 99.7 6.2E-16 1.3E-20 125.6 11.5 112 273-390 1-113 (120)
161 cd04038 C2_ArfGAP C2 domain pr 99.7 9.2E-16 2E-20 128.3 12.7 91 130-230 2-93 (145)
162 cd04032 C2_Perforin C2 domain 99.7 5.4E-16 1.2E-20 126.4 10.9 91 129-227 27-118 (127)
163 cd04040 C2D_Tricalbin-like C2 99.7 1E-15 2.2E-20 123.6 11.9 102 132-240 1-103 (115)
164 cd04049 C2_putative_Elicitor-r 99.7 8E-16 1.7E-20 126.0 11.4 105 130-240 1-108 (124)
165 cd04048 C2A_Copine C2 domain f 99.7 6E-16 1.3E-20 125.9 10.4 102 135-239 5-113 (120)
166 cd04049 C2_putative_Elicitor-r 99.7 9E-16 2E-20 125.7 11.4 91 273-367 1-93 (124)
167 cd04051 C2_SRC2_like C2 domain 99.7 1.1E-15 2.4E-20 125.4 11.4 105 131-240 1-114 (125)
168 cd04013 C2_SynGAP_like C2 doma 99.7 2.2E-15 4.7E-20 125.3 13.0 126 130-271 11-141 (146)
169 KOG1011|consensus 99.7 4.3E-15 9.3E-20 144.1 16.9 100 130-240 295-406 (1283)
170 cd08382 C2_Smurf-like C2 domai 99.6 1.3E-15 2.9E-20 124.4 11.6 88 274-368 1-90 (123)
171 cd04046 C2_Calpain C2 domain p 99.6 1E-15 2.2E-20 125.6 10.9 99 273-379 3-101 (126)
172 cd04045 C2C_Tricalbin-like C2 99.6 1.3E-15 2.9E-20 123.7 10.8 102 130-240 1-103 (120)
173 cd08686 C2_ABR C2 domain in th 99.6 3E-15 6.4E-20 118.9 12.4 83 132-224 1-91 (118)
174 cd04014 C2_PKC_epsilon C2 doma 99.6 2.5E-15 5.4E-20 124.5 12.0 88 273-367 4-101 (132)
175 cd04037 C2E_Ferlin C2 domain f 99.6 1.5E-15 3.3E-20 124.2 9.4 91 132-228 2-93 (124)
176 cd08691 C2_NEDL1-like C2 domai 99.6 7.9E-15 1.7E-19 121.3 13.6 108 275-397 3-124 (137)
177 cd08373 C2A_Ferlin C2 domain f 99.6 5.9E-15 1.3E-19 121.3 12.4 96 279-380 2-99 (127)
178 cd04021 C2_E3_ubiquitin_ligase 99.6 8.2E-15 1.8E-19 120.0 13.1 117 130-266 2-124 (125)
179 cd04040 C2D_Tricalbin-like C2 99.6 7.4E-15 1.6E-19 118.6 12.4 89 275-368 1-89 (115)
180 cd08686 C2_ABR C2 domain in th 99.6 4.3E-15 9.3E-20 118.0 10.4 84 275-367 1-92 (118)
181 cd04047 C2B_Copine C2 domain s 99.6 3.1E-15 6.6E-20 119.8 9.6 98 276-376 3-106 (110)
182 PLN03008 Phospholipase D delta 99.6 4.9E-15 1.1E-19 150.7 12.7 126 128-271 12-179 (868)
183 cd00275 C2_PLC_like C2 domain 99.6 1.8E-14 4E-19 118.5 14.0 121 131-268 3-127 (128)
184 cd08383 C2A_RasGAP C2 domain ( 99.6 6.8E-15 1.5E-19 119.1 10.8 98 275-379 2-99 (117)
185 cd04048 C2A_Copine C2 domain f 99.6 8.9E-15 1.9E-19 119.0 11.3 89 278-368 5-100 (120)
186 cd04047 C2B_Copine C2 domain s 99.6 7.7E-15 1.7E-19 117.5 9.9 98 132-233 2-105 (110)
187 KOG2059|consensus 99.6 3.3E-15 7.2E-20 146.6 9.1 193 47-270 68-277 (800)
188 cd04051 C2_SRC2_like C2 domain 99.6 1.1E-14 2.4E-19 119.4 10.7 91 274-367 1-94 (125)
189 cd04044 C2A_Tricalbin-like C2 99.6 3.4E-14 7.3E-19 116.2 12.1 91 273-368 2-93 (124)
190 cd04052 C2B_Tricalbin-like C2 99.5 2.8E-14 6E-19 114.4 9.4 100 148-270 10-110 (111)
191 PF00168 C2: C2 domain; Inter 99.5 8E-14 1.7E-18 105.6 10.7 85 275-362 1-85 (85)
192 cd00275 C2_PLC_like C2 domain 99.5 6.5E-14 1.4E-18 115.2 10.6 104 273-380 2-110 (128)
193 cd08374 C2F_Ferlin C2 domain s 99.5 9.8E-14 2.1E-18 113.3 10.6 95 274-369 1-122 (133)
194 PF00168 C2: C2 domain; Inter 99.5 2.9E-13 6.3E-18 102.5 9.7 84 132-220 1-85 (85)
195 cd04021 C2_E3_ubiquitin_ligase 99.5 4.6E-13 9.9E-18 109.6 10.7 87 273-367 2-88 (125)
196 cd04052 C2B_Tricalbin-like C2 99.4 3E-13 6.5E-18 108.4 8.1 85 290-380 9-96 (111)
197 PLN03200 cellulose synthase-in 99.4 4E-13 8.7E-18 148.9 11.7 119 130-270 1980-2101(2102)
198 cd04013 C2_SynGAP_like C2 doma 99.4 9.5E-13 2.1E-17 109.5 11.1 101 273-384 11-117 (146)
199 cd08374 C2F_Ferlin C2 domain s 99.4 6.5E-13 1.4E-17 108.5 9.7 97 131-230 1-125 (133)
200 KOG1326|consensus 99.4 3.1E-13 6.8E-18 137.3 9.4 238 130-374 613-973 (1105)
201 KOG1326|consensus 99.4 1.3E-13 2.8E-18 140.1 6.0 91 273-367 613-703 (1105)
202 KOG0905|consensus 99.4 1.9E-13 4.1E-18 140.4 6.9 126 112-239 1508-1634(1639)
203 PLN03008 Phospholipase D delta 99.4 1.4E-12 3E-17 133.1 11.4 86 292-384 75-162 (868)
204 KOG1013|consensus 99.4 1.3E-12 2.8E-17 118.4 9.0 114 112-226 215-329 (362)
205 PLN03200 cellulose synthase-in 99.4 9.4E-13 2E-17 146.0 9.0 102 272-380 1979-2082(2102)
206 KOG1328|consensus 99.4 5.5E-13 1.2E-17 131.2 5.2 116 111-227 928-1048(1103)
207 KOG1011|consensus 99.4 9.1E-13 2E-17 128.1 6.5 105 272-383 294-409 (1283)
208 smart00239 C2 Protein kinase C 99.3 1.5E-11 3.3E-16 95.6 10.4 96 131-231 1-97 (101)
209 KOG0905|consensus 99.3 1.7E-12 3.6E-17 133.6 5.8 112 256-369 1509-1622(1639)
210 smart00239 C2 Protein kinase C 99.3 2.3E-11 5E-16 94.6 11.0 97 274-373 1-97 (101)
211 KOG1327|consensus 99.3 5.5E-11 1.2E-15 115.9 13.4 206 144-368 4-234 (529)
212 cd00030 C2 C2 domain. The C2 d 99.3 4.3E-11 9.2E-16 92.8 10.3 99 132-237 1-101 (102)
213 cd00030 C2 C2 domain. The C2 d 99.2 6.9E-11 1.5E-15 91.6 10.6 89 275-368 1-89 (102)
214 PLN02223 phosphoinositide phos 99.2 6.4E-11 1.4E-15 116.5 11.1 108 273-383 409-522 (537)
215 PLN02223 phosphoinositide phos 99.2 6.9E-11 1.5E-15 116.2 11.0 104 130-239 409-518 (537)
216 PLN02952 phosphoinositide phos 99.2 3.8E-10 8.3E-15 113.3 14.1 106 129-240 469-581 (599)
217 PLN02952 phosphoinositide phos 99.1 3.5E-10 7.6E-15 113.6 11.3 110 272-384 469-585 (599)
218 PLN02230 phosphoinositide phos 99.1 3E-10 6.4E-15 113.9 10.3 109 272-383 468-583 (598)
219 PLN02230 phosphoinositide phos 99.1 3.9E-10 8.4E-15 113.1 10.7 105 129-239 468-579 (598)
220 cd08684 C2A_Tac2-N C2 domain f 99.1 1.4E-10 3.1E-15 85.0 5.4 100 276-378 2-103 (103)
221 PLN02270 phospholipase D alpha 99.1 8.9E-10 1.9E-14 112.8 12.6 124 129-270 7-149 (808)
222 PLN02222 phosphoinositide phos 99.1 7E-10 1.5E-14 111.1 11.2 102 272-375 451-559 (581)
223 KOG1031|consensus 99.1 3.3E-10 7.1E-15 109.4 7.9 116 273-394 3-120 (1169)
224 PLN02222 phosphoinositide phos 99.1 1E-09 2.2E-14 109.9 11.2 105 130-240 452-563 (581)
225 PLN02228 Phosphoinositide phos 99.0 2.9E-09 6.3E-14 106.4 14.0 104 130-239 431-542 (567)
226 KOG0169|consensus 99.0 5.4E-10 1.2E-14 112.1 8.0 100 274-375 617-722 (746)
227 PLN02228 Phosphoinositide phos 99.0 2.2E-09 4.8E-14 107.3 10.7 111 272-385 430-548 (567)
228 KOG0169|consensus 99.0 3.6E-09 7.9E-14 106.3 11.1 98 131-231 617-720 (746)
229 cd08689 C2_fungal_Pkc1p C2 dom 98.9 3.2E-09 6.9E-14 81.6 7.6 85 132-228 1-88 (109)
230 KOG1264|consensus 98.9 5.9E-09 1.3E-13 104.4 9.7 105 131-242 1066-1173(1267)
231 KOG1031|consensus 98.9 7.1E-09 1.5E-13 100.4 8.8 94 130-229 3-99 (1169)
232 PLN02270 phospholipase D alpha 98.8 1.2E-08 2.5E-13 104.8 9.7 108 272-386 7-135 (808)
233 KOG1264|consensus 98.7 3.8E-08 8.1E-13 98.8 9.7 93 273-368 1065-1160(1267)
234 cd08689 C2_fungal_Pkc1p C2 dom 98.7 3.1E-08 6.7E-13 76.2 6.9 84 275-369 1-87 (109)
235 KOG2060|consensus 98.7 1.3E-07 2.9E-12 87.7 9.9 123 257-395 255-380 (405)
236 cd08683 C2_C2cd3 C2 domain fou 98.6 8.2E-08 1.8E-12 76.2 5.4 93 275-367 1-129 (143)
237 KOG2060|consensus 98.5 1.1E-07 2.4E-12 88.3 5.2 122 113-240 254-379 (405)
238 cd08684 C2A_Tac2-N C2 domain f 98.5 1.3E-07 2.7E-12 69.7 4.3 93 133-229 2-95 (103)
239 PLN02352 phospholipase D epsil 98.3 2.9E-06 6.2E-11 87.3 10.9 118 129-271 9-132 (758)
240 cd08683 C2_C2cd3 C2 domain fou 98.0 5.4E-06 1.2E-10 65.9 4.4 95 132-230 1-134 (143)
241 PLN02352 phospholipase D epsil 98.0 1.4E-05 3.1E-10 82.2 7.9 101 273-386 10-118 (758)
242 KOG1327|consensus 97.9 4.3E-05 9.4E-10 75.3 9.3 113 112-228 118-236 (529)
243 PF12416 DUF3668: Cep120 prote 97.7 0.0041 8.8E-08 59.1 17.6 218 132-367 2-292 (340)
244 PLN02964 phosphatidylserine de 97.5 0.00014 3E-09 74.5 6.3 96 269-376 50-146 (644)
245 PLN02964 phosphatidylserine de 97.5 0.00017 3.7E-09 73.8 6.9 89 126-229 50-140 (644)
246 KOG1265|consensus 97.4 0.00031 6.7E-09 72.1 6.1 90 131-229 704-797 (1189)
247 KOG3837|consensus 97.3 0.00011 2.4E-09 69.4 1.9 131 124-268 361-502 (523)
248 cd08693 C2_PI3K_class_I_beta_d 97.3 0.0018 3.9E-08 55.8 9.1 93 273-367 8-119 (173)
249 PF15627 CEP76-C2: CEP76 C2 do 97.2 0.006 1.3E-07 51.0 11.5 131 127-271 6-152 (156)
250 cd08398 C2_PI3K_class_I_alpha 97.1 0.0035 7.6E-08 53.1 9.3 91 273-367 8-105 (158)
251 cd08380 C2_PI3K_like C2 domain 97.1 0.0039 8.4E-08 52.9 9.0 94 273-367 8-106 (156)
252 KOG1265|consensus 97.0 0.0015 3.2E-08 67.3 6.5 94 272-375 702-801 (1189)
253 cd08397 C2_PI3K_class_III C2 d 97.0 0.0034 7.4E-08 53.3 7.7 76 292-367 28-106 (159)
254 cd08693 C2_PI3K_class_I_beta_d 96.9 0.02 4.3E-07 49.4 12.0 95 129-226 7-120 (173)
255 KOG3837|consensus 96.8 0.00075 1.6E-08 63.9 2.5 96 272-367 366-472 (523)
256 cd08398 C2_PI3K_class_I_alpha 96.8 0.0086 1.9E-07 50.7 8.6 94 129-227 7-107 (158)
257 cd04012 C2A_PI3K_class_II C2 d 96.7 0.0071 1.5E-07 52.1 8.0 95 273-367 8-118 (171)
258 PF12416 DUF3668: Cep120 prote 96.7 0.011 2.3E-07 56.3 9.7 87 275-368 2-94 (340)
259 cd08380 C2_PI3K_like C2 domain 96.7 0.043 9.3E-07 46.5 12.3 97 129-227 7-108 (156)
260 PF15627 CEP76-C2: CEP76 C2 do 96.4 0.034 7.4E-07 46.5 9.6 103 270-384 6-121 (156)
261 cd08399 C2_PI3K_class_I_gamma 96.4 0.025 5.5E-07 48.7 8.9 94 273-367 10-121 (178)
262 cd04012 C2A_PI3K_class_II C2 d 96.1 0.057 1.2E-06 46.5 9.9 97 129-226 7-119 (171)
263 PF10358 NT-C2: N-terminal C2 96.0 0.2 4.3E-06 41.5 12.4 102 131-239 8-119 (143)
264 cd08399 C2_PI3K_class_I_gamma 95.8 0.086 1.9E-06 45.5 9.7 79 129-209 9-88 (178)
265 PF00792 PI3K_C2: Phosphoinosi 95.8 0.053 1.2E-06 45.1 8.0 73 295-367 3-84 (142)
266 smart00142 PI3K_C2 Phosphoinos 95.7 0.058 1.3E-06 41.9 7.6 76 275-350 13-91 (100)
267 cd08397 C2_PI3K_class_III C2 d 95.5 0.061 1.3E-06 45.6 7.5 77 149-226 28-107 (159)
268 PF10358 NT-C2: N-terminal C2 95.1 0.47 1E-05 39.2 11.7 90 273-367 7-103 (143)
269 PF14429 DOCK-C2: C2 domain in 95.1 0.39 8.5E-06 41.8 11.5 61 309-369 59-122 (184)
270 cd08695 C2_Dock-B C2 domains f 95.0 0.25 5.5E-06 42.9 9.8 58 166-224 52-112 (189)
271 cd08694 C2_Dock-A C2 domains f 94.8 0.31 6.6E-06 42.5 9.8 58 166-224 52-114 (196)
272 PF14429 DOCK-C2: C2 domain in 94.6 0.69 1.5E-05 40.2 11.7 59 166-225 58-120 (184)
273 smart00142 PI3K_C2 Phosphoinos 94.1 0.39 8.5E-06 37.3 8.1 79 131-210 12-92 (100)
274 cd08695 C2_Dock-B C2 domains f 94.1 0.19 4.1E-06 43.7 6.8 58 309-366 53-112 (189)
275 PF00792 PI3K_C2: Phosphoinosi 93.7 0.54 1.2E-05 39.0 8.8 75 152-227 3-86 (142)
276 cd08694 C2_Dock-A C2 domains f 93.6 0.28 6.1E-06 42.7 7.0 58 309-366 53-114 (196)
277 KOG1452|consensus 93.1 0.44 9.6E-06 44.0 7.8 82 123-213 44-127 (442)
278 cd08687 C2_PKN-like C2 domain 88.8 5 0.00011 30.4 8.4 63 151-225 9-71 (98)
279 cd08696 C2_Dock-C C2 domains f 88.8 1.5 3.2E-05 37.9 6.5 61 309-369 54-120 (179)
280 cd08679 C2_DOCK180_related C2 88.3 1.3 2.8E-05 38.4 5.9 57 310-367 54-115 (178)
281 cd08697 C2_Dock-D C2 domains f 86.2 2.8 6.2E-05 36.4 6.8 59 309-367 56-123 (185)
282 KOG1452|consensus 86.0 2.5 5.5E-05 39.2 6.6 84 266-356 44-129 (442)
283 PF15625 CC2D2AN-C2: CC2D2A N- 85.0 6.2 0.00014 33.7 8.4 67 294-367 37-105 (168)
284 PF15625 CC2D2AN-C2: CC2D2A N- 84.6 17 0.00037 31.0 10.9 70 150-227 36-107 (168)
285 cd08697 C2_Dock-D C2 domains f 83.0 19 0.00041 31.3 10.5 59 166-225 55-123 (185)
286 PF11618 DUF3250: Protein of u 82.7 4.5 9.7E-05 31.8 6.0 62 166-230 10-77 (107)
287 cd08679 C2_DOCK180_related C2 81.7 3.5 7.7E-05 35.6 5.6 56 168-225 54-115 (178)
288 PF07162 B9-C2: Ciliary basal 79.2 34 0.00074 29.1 10.8 86 276-367 5-103 (168)
289 cd08696 C2_Dock-C C2 domains f 78.3 5.6 0.00012 34.3 5.6 58 166-224 53-117 (179)
290 PF10409 PTEN_C2: C2 domain of 76.4 39 0.00085 27.3 10.4 91 273-367 4-96 (134)
291 PF14186 Aida_C2: Cytoskeletal 75.8 23 0.0005 29.5 8.3 110 269-382 9-125 (147)
292 KOG4027|consensus 71.8 49 0.0011 27.7 9.1 75 293-367 25-110 (187)
293 PF14186 Aida_C2: Cytoskeletal 70.3 22 0.00047 29.6 6.9 99 127-229 10-115 (147)
294 KOG0906|consensus 65.3 9.1 0.0002 39.3 4.4 46 322-367 77-123 (843)
295 KOG1329|consensus 59.6 1.4E+02 0.0031 32.3 12.0 82 151-240 138-221 (887)
296 PF11618 DUF3250: Protein of u 59.0 22 0.00047 27.9 4.7 57 309-367 11-72 (107)
297 KOG0694|consensus 56.3 4.2 9.1E-05 42.0 0.4 67 150-225 27-94 (694)
298 KOG1329|consensus 54.7 9.8 0.00021 40.6 2.7 85 293-383 137-224 (887)
299 cd08687 C2_PKN-like C2 domain 53.1 56 0.0012 24.9 5.7 50 294-351 9-58 (98)
300 KOG0904|consensus 53.0 60 0.0013 34.9 7.9 75 272-349 342-421 (1076)
301 PF10409 PTEN_C2: C2 domain of 52.6 1.2E+02 0.0026 24.4 9.3 93 130-227 4-98 (134)
302 KOG0904|consensus 52.0 33 0.00071 36.8 5.9 76 129-208 342-421 (1076)
303 PTZ00447 apical membrane antig 49.7 1.9E+02 0.004 27.7 9.8 97 129-239 57-157 (508)
304 PF14909 SPATA6: Spermatogenes 47.6 1.6E+02 0.0035 24.3 9.0 73 150-227 19-100 (140)
305 KOG0906|consensus 40.5 1.3E+02 0.0028 31.4 7.9 76 149-225 45-123 (843)
306 PF07162 B9-C2: Ciliary basal 35.0 2.8E+02 0.0061 23.5 9.8 83 135-223 7-101 (168)
307 PTZ00447 apical membrane antig 33.7 3.4E+02 0.0074 26.1 9.0 99 271-382 56-160 (508)
308 PF06219 DUF1005: Protein of u 32.0 3.3E+02 0.0071 26.9 8.8 63 199-271 95-169 (460)
309 KOG0241|consensus 31.1 73 0.0016 34.7 4.6 126 214-356 771-932 (1714)
310 PF08151 FerI: FerI (NUC094) d 30.5 66 0.0014 23.2 3.1 42 223-271 3-44 (72)
311 KOG0694|consensus 29.5 22 0.00048 36.9 0.6 53 293-352 27-79 (694)
312 cd05137 RasGAP_CLA2_BUD2 CLA2/ 27.5 74 0.0016 31.3 3.9 26 215-240 1-27 (395)
313 KOG1032|consensus 26.6 2.1E+02 0.0045 29.9 7.0 80 132-219 99-180 (590)
314 PF15532 Toxin_53: Putative to 26.0 3.1E+02 0.0068 21.2 6.4 67 119-186 23-93 (102)
315 PF14909 SPATA6: Spermatogenes 25.7 3.8E+02 0.0083 22.1 8.4 71 292-367 18-98 (140)
316 KOG3543|consensus 20.1 3.6E+02 0.0079 28.1 7.0 111 259-379 327-440 (1218)
No 1
>KOG1028|consensus
Probab=100.00 E-value=1e-48 Score=380.45 Aligned_cols=270 Identities=34% Similarity=0.553 Sum_probs=248.0
Q ss_pred CCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEecee
Q psy12136 112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191 (399)
Q Consensus 112 ~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v 191 (399)
.....|+|++++.|+.....|.|+|++|++|++.+..|.+||||+++++|++ ..+.+|++.++++||+|||+|.| .|
T Consensus 149 ~~~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk--~~k~kT~v~r~tlnP~fnEtf~f-~v 225 (421)
T KOG1028|consen 149 NVKAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDK--KGKFKTRVHRKTLNPVFNETFRF-EV 225 (421)
T ss_pred cceeeeeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCC--CCcceeeeeecCcCCccccceEe-ec
Confidence 4567899999999999999999999999999999977889999999999987 48999999999999999999999 59
Q ss_pred CcccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136 192 SETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 270 (399)
Q Consensus 192 ~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~ 270 (399)
+..++....|.|.|||+|++++ ++||++.++|..+.......+|.++..... ......|+|.++++|.|
T Consensus 226 ~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~----------~~~~~~gel~~sL~Y~p 295 (421)
T KOG1028|consen 226 PYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSST----------DSEELAGELLLSLCYLP 295 (421)
T ss_pred CHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccC----------CcccccceEEEEEEeec
Confidence 9999999999999999999999 999999999999988877778888864211 11122389999999999
Q ss_pred cceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeC
Q psy12136 271 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDK 349 (399)
Q Consensus 271 ~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~ 349 (399)
..++|+|.|++|+||..++..+..||||++++..+..+ .++||.+++++.||+|||+|.|.|+.+.+.+..|.|+|||+
T Consensus 296 ~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~ 375 (421)
T KOG1028|consen 296 TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDH 375 (421)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEc
Confidence 99999999999999999999999999999999977755 89999999999999999999999999999988999999999
Q ss_pred CCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCC
Q psy12136 350 DYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 394 (399)
Q Consensus 350 ~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~ 394 (399)
+.++++++||++.++..+.+.+..||.+|+.+|++++++||.|..
T Consensus 376 d~~~~~~~iG~~~lG~~~~~~~~~hW~~m~~~p~~pv~~wh~l~~ 420 (421)
T KOG1028|consen 376 DTLGSNDLIGRCILGSDSTGEEVRHWQEMLNSPRKPVAQWHSLRS 420 (421)
T ss_pred ccccccceeeEEEecCCCCchHHHHHHHHHhCccCceeeeEeccc
Confidence 999999999999999998888999999999999999999999975
No 2
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=100.00 E-value=1.4e-32 Score=227.27 Aligned_cols=135 Identities=24% Similarity=0.329 Sum_probs=126.4
Q ss_pred ceeEEEEEeeeccceeEEEEEEeeecCCCCCC--CCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccC
Q psy12136 259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDS--NGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKIT 335 (399)
Q Consensus 259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~--~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~ 335 (399)
.|+|.++++|.|..++|.|.|++|+||+.++. .+.+||||+|++.++..+ .++||++++++.||+|||+|.|.++.+
T Consensus 1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~ 80 (138)
T cd08407 1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSE 80 (138)
T ss_pred CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHH
Confidence 38999999999999999999999999999873 345899999999987655 789999999999999999999999988
Q ss_pred cccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCC
Q psy12136 336 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 393 (399)
Q Consensus 336 ~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~ 393 (399)
++.+..|.|+|||++.++++++||++.|++.+.+.+.+||.+|+.+|++++++||.|.
T Consensus 81 ~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml~~p~~~va~WH~L~ 138 (138)
T cd08407 81 LLAASSVELEVLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEMLDNPRRQIAMWHQLH 138 (138)
T ss_pred HhCccEEEEEEEeCCCCcCcceeceEEecCcCCCcHHHHHHHHHhCCCCchhEEEECC
Confidence 8888999999999999999999999999999999999999999999999999999985
No 3
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.98 E-value=1.6e-31 Score=217.70 Aligned_cols=131 Identities=16% Similarity=0.266 Sum_probs=120.0
Q ss_pred eEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCC-CceecceEEEEeccCccc
Q psy12136 261 KIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTL-NPIFNEEFAIETKITELS 338 (399)
Q Consensus 261 ~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~-nP~wne~f~f~v~~~~l~ 338 (399)
+|.++++|.|..++|+|+|++|+||+++...+.+||||||++.+.+++ .++||++++++. ||+|||+|.|+|+.++ .
T Consensus 2 el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~-~ 80 (135)
T cd08692 2 ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQE-H 80 (135)
T ss_pred eEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchh-h
Confidence 799999999999999999999999999877777899999999987766 899999999995 6999999999998754 4
Q ss_pred ccEEEEEEEeCCCCCCCeeeEEEEEccCC-CCCcchhhhhhhcCCCCceeeEEeC
Q psy12136 339 KQTLVITVWDKDYGKSNDYLGCLELCCNS-KGDRLRHWVDMMKYPDHKHEGIHNL 392 (399)
Q Consensus 339 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~-~~~~~~~w~~l~~~p~~~~~~Wh~L 392 (399)
+..|.|+|||++..+++++||++.|+.++ .+.+.+||.+|+.+|++++++||.|
T Consensus 81 ~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~~pr~~ia~WH~L 135 (135)
T cd08692 81 GIQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIANPEKVVTKWHSL 135 (135)
T ss_pred eeEEEEEEEeCCCCcCCceEEEEEECCccCCchhhhhHHHHHhCCCCeeeEeecC
Confidence 67899999999999999999999999987 4567999999999999999999987
No 4
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.97 E-value=1.5e-31 Score=221.39 Aligned_cols=135 Identities=30% Similarity=0.408 Sum_probs=127.1
Q ss_pred ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcc
Q psy12136 259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 337 (399)
Q Consensus 259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l 337 (399)
.|+|.++++|.+...+|.|+|++|+||+..+..|.+||||++++.+++.+ .++||++++++.||+|||+|.|.++..++
T Consensus 1 ~G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l 80 (136)
T cd08406 1 VGEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVL 80 (136)
T ss_pred CcEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHh
Confidence 38999999999999999999999999999988999999999999876554 68899999999999999999999988888
Q ss_pred cccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCC
Q psy12136 338 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 393 (399)
Q Consensus 338 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~ 393 (399)
.+..|.|+|||++.++++++||++.|+..+.+.+.+||++|+.+|++++++||.|.
T Consensus 81 ~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~~~~~v~~WH~l~ 136 (136)
T cd08406 81 QDLSLRVTVAESTEDGKTPNVGHVIIGPAASGMGLSHWNQMLASLRKPVAMWHPLR 136 (136)
T ss_pred CCcEEEEEEEeCCCCCCCCeeEEEEECCCCCChhHHHHHHHHHCCCCeeeEeeecC
Confidence 88999999999999999999999999999999999999999999999999999984
No 5
>KOG1013|consensus
Probab=99.97 E-value=1.3e-31 Score=240.21 Aligned_cols=281 Identities=37% Similarity=0.586 Sum_probs=248.5
Q ss_pred CCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEecee
Q psy12136 112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191 (399)
Q Consensus 112 ~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v 191 (399)
+....|.+.+.+.|+...+.+.+++.+|++|.+++.++..|||+++.++|......+.+|++..+++||.|||+..+..+
T Consensus 75 ~at~lg~~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i 154 (362)
T KOG1013|consen 75 PATTLGALEFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGI 154 (362)
T ss_pred hhhhccchhhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceeccc
Confidence 44578999999999999999999999999999999999999999999999666667799999999999999998877667
Q ss_pred CcccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136 192 SETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 270 (399)
Q Consensus 192 ~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~ 270 (399)
..++...+.+++.|+|.+.+.. +++|+..+++..+...+...+...|+...+ .+. ........+|++.+++.|..
T Consensus 155 ~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp--~~r--ad~~~~E~rg~i~isl~~~s 230 (362)
T KOG1013|consen 155 TDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLP--SER--ADRDEDEERGAILISLAYSS 230 (362)
T ss_pred ccchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCC--ccc--ccccchhhccceeeeeccCc
Confidence 7777777899999999999988 999999999999988776555555544322 111 12222478999999999999
Q ss_pred cceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeC
Q psy12136 271 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDK 349 (399)
Q Consensus 271 ~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~ 349 (399)
....+.|++++|..|..+|.+|-+||||+.++.++.++ -++||.+.+++.+|+||+.|.|.+.+.+|....+.|.|||+
T Consensus 231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~ 310 (362)
T KOG1013|consen 231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY 310 (362)
T ss_pred CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence 99999999999999999999999999999999877666 79999999999999999999999999999999999999999
Q ss_pred CCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCCC
Q psy12136 350 DYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP 396 (399)
Q Consensus 350 ~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~~ 396 (399)
+..+.++++|-+..+....+....||..++..++.....||.|..+.
T Consensus 311 ~~G~s~d~~GG~~~g~~rr~~v~~h~gr~~~~~~a~~~~ss~l~~~~ 357 (362)
T KOG1013|consen 311 DIGKSNDSIGGSMLGGYRRGEVHKHWGRCLFDQDANFERSSGLETEG 357 (362)
T ss_pred CCCcCccCCCcccccccccchhhcCcccccccccccccccccccccc
Confidence 99888999999999999999999999999999999999999998653
No 6
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.96 E-value=3.4e-29 Score=208.27 Aligned_cols=134 Identities=27% Similarity=0.412 Sum_probs=124.3
Q ss_pred eeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC--ceEeecceeCCCCceecceEEEEeccCcc
Q psy12136 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITEL 337 (399)
Q Consensus 260 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l 337 (399)
|+|.+++.|.+..++|.|+|++|+||+.++..|.+||||++++.+..++ .++||++++++.||+|||+|.|.++..++
T Consensus 2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l 81 (138)
T cd08408 2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL 81 (138)
T ss_pred CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh
Confidence 7899999999999999999999999999998999999999999875433 57899999999999999999999998888
Q ss_pred cccEEEEEEEeCCCCCCCeeeEEEEEccCCCC-CcchhhhhhhcCCCCceeeEEeCC
Q psy12136 338 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKG-DRLRHWVDMMKYPDHKHEGIHNLS 393 (399)
Q Consensus 338 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~-~~~~~w~~l~~~p~~~~~~Wh~L~ 393 (399)
.+..|.|+|||++.++++++||++.|++...+ .+.+||++|+.+|++++++||.|.
T Consensus 82 ~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~~~~~v~~WH~l~ 138 (138)
T cd08408 82 SEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKESKGQQVCRWHTLL 138 (138)
T ss_pred CccEEEEEEEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHhCCCCEEeEeeecC
Confidence 88999999999999999999999999999876 468999999999999999999984
No 7
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.96 E-value=4.5e-29 Score=207.76 Aligned_cols=133 Identities=24% Similarity=0.388 Sum_probs=122.9
Q ss_pred ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcc
Q psy12136 259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 337 (399)
Q Consensus 259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l 337 (399)
.|+|++++.|.+..++|.|.|++|+||+..+ .+.+||||+|.+.+.... .+++|++++++.||+|||+|.|.++..++
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l 79 (137)
T cd08409 1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQL 79 (137)
T ss_pred CcEEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHh
Confidence 4899999999999999999999999999888 778999999999876544 68899999999999999999999988888
Q ss_pred cccEEEEEEEeCCCCCCCeeeEEEEEccC--CCCCcchhhhhhhcCCCCceeeEEeC
Q psy12136 338 SKQTLVITVWDKDYGKSNDYLGCLELCCN--SKGDRLRHWVDMMKYPDHKHEGIHNL 392 (399)
Q Consensus 338 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~--~~~~~~~~w~~l~~~p~~~~~~Wh~L 392 (399)
.+..|.|+|||++..+++++||++.|+.. +.+.+.+||++|+.+|++++++||.|
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i~~WH~l 136 (137)
T cd08409 80 DTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELIKRWHAL 136 (137)
T ss_pred CccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCceeEEEeC
Confidence 88899999999998889999999999965 56788999999999999999999997
No 8
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.96 E-value=1.3e-28 Score=205.32 Aligned_cols=135 Identities=36% Similarity=0.608 Sum_probs=125.0
Q ss_pred ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcc
Q psy12136 259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 337 (399)
Q Consensus 259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l 337 (399)
.|+|.+++.|.+..+.|.|.|++|++|+.++..+.+||||+|++.+.+.. .+++|++++++.||+|||+|.|.+...++
T Consensus 1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l 80 (136)
T cd08402 1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQI 80 (136)
T ss_pred CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHh
Confidence 49999999999999999999999999999998999999999999754433 67899999999999999999999986666
Q ss_pred cccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCC
Q psy12136 338 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 393 (399)
Q Consensus 338 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~ 393 (399)
....|.|+|||++.++++++||++.|++.+.+.+..||++|+..|++++++||.|+
T Consensus 81 ~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~~~~~~W~~~~~~~~~~~~~wh~~~ 136 (136)
T cd08402 81 QKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLASPRRPIAQWHTLQ 136 (136)
T ss_pred CCCEEEEEEEeCCCCCCCceeEEEEECCccCChHHHHHHHHHhCCCCeeeEEEEcC
Confidence 66789999999999999999999999999999999999999999999999999985
No 9
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.96 E-value=4.4e-28 Score=201.50 Aligned_cols=133 Identities=30% Similarity=0.514 Sum_probs=121.5
Q ss_pred eeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCccc
Q psy12136 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELS 338 (399)
Q Consensus 260 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~ 338 (399)
|+|.+++.|.+..+.|.|.|++|++|+..+..|.+||||++++.++... .+++|++++++.||+|||+|.|.+...++.
T Consensus 1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~ 80 (135)
T cd08410 1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELE 80 (135)
T ss_pred CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhC
Confidence 8999999999999999999999999999998899999999998654333 678999999999999999999999877777
Q ss_pred ccEEEEEEEeCCCCCCCeeeEEEEEccCCCC-CcchhhhhhhcCCCCceeeEEeC
Q psy12136 339 KQTLVITVWDKDYGKSNDYLGCLELCCNSKG-DRLRHWVDMMKYPDHKHEGIHNL 392 (399)
Q Consensus 339 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~-~~~~~w~~l~~~p~~~~~~Wh~L 392 (399)
+..|.|+|||++..+++++||++.|+..+.+ .+.+||+.|+.+|++++++||.|
T Consensus 81 ~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~~~~~~wh~l 135 (135)
T cd08410 81 NVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQRTAVEQWHSL 135 (135)
T ss_pred CCEEEEEEEeCCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCCCEeeEeecC
Confidence 7789999999999899999999999987754 46899999999999999999987
No 10
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.95 E-value=5.9e-28 Score=201.30 Aligned_cols=135 Identities=40% Similarity=0.658 Sum_probs=124.3
Q ss_pred ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcc
Q psy12136 259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 337 (399)
Q Consensus 259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l 337 (399)
+|+|.++++|.+..+.|.|+|++|+||+..+..+.+||||+|++.+.+.. .+++|++++++.||+|||+|.|.+...++
T Consensus 1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~ 80 (136)
T cd08405 1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERL 80 (136)
T ss_pred CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHh
Confidence 59999999999999999999999999999888899999999999754333 67899999999999999999999876666
Q ss_pred cccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCC
Q psy12136 338 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 393 (399)
Q Consensus 338 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~ 393 (399)
.+..|.|+|||++.++++++||++.|++.+.+.+.+||++|+..|++++.+||.|.
T Consensus 81 ~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~~~~~w~~~~~~~~~~~~~wh~l~ 136 (136)
T cd08405 81 RETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQPVAQWHRLK 136 (136)
T ss_pred CCCEEEEEEEECCCCCCCcEeEEEEECCccCCchHHHHHHHHhCCCCchhEEEecC
Confidence 66789999999999989999999999999889999999999999999999999984
No 11
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.95 E-value=7.3e-28 Score=200.04 Aligned_cols=132 Identities=61% Similarity=0.999 Sum_probs=122.3
Q ss_pred eEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcccc
Q psy12136 261 KIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSK 339 (399)
Q Consensus 261 ~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~ 339 (399)
+|.+++.|.+..+.|.|+|++|+||+.++..|.+||||+|++.+...+ .+++|++++++.||+|||+|.|.+...++..
T Consensus 1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~ 80 (133)
T cd08384 1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK 80 (133)
T ss_pred CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence 478999999999999999999999999998899999999999875544 6889999999999999999999998766767
Q ss_pred cEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeC
Q psy12136 340 QTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 392 (399)
Q Consensus 340 ~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L 392 (399)
..|.|+|||++..+++++||++.|++++.+....||++|+.+|++++++||.|
T Consensus 81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~W~~~l~~~~~~~~~wh~l 133 (133)
T cd08384 81 KTLEITVWDKDIGKSNDYIGGLQLGINAKGERLRHWLDCLKNPDKKIEAWHTL 133 (133)
T ss_pred CEEEEEEEeCCCCCCccEEEEEEEecCCCCchHHHHHHHHhCCCCChheeecC
Confidence 89999999999888899999999999998889999999999999999999987
No 12
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.95 E-value=1.6e-27 Score=198.17 Aligned_cols=133 Identities=32% Similarity=0.569 Sum_probs=123.0
Q ss_pred eeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCccc
Q psy12136 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELS 338 (399)
Q Consensus 260 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~ 338 (399)
|+|.+++.|.+..++|.|+|++|++|+.++..|.+||||+|++.+.+.+ .+++|++++++.||.|||+|.|.+....+.
T Consensus 1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~ 80 (134)
T cd08403 1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVD 80 (134)
T ss_pred CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhC
Confidence 7899999999999999999999999999999999999999999764434 688999999999999999999998766666
Q ss_pred ccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeC
Q psy12136 339 KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 392 (399)
Q Consensus 339 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L 392 (399)
...|.|+|||++..+++++||++.|++.+.+.+.+||++|+.+|++++++||.|
T Consensus 81 ~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~~~~~~w~~~~~~~~~~~~~wh~~ 134 (134)
T cd08403 81 NVSLIIAVVDYDRVGHNELIGVCRVGPNADGQGREHWNEMLANPRKPIAQWHQL 134 (134)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEECCCCCCchHHHHHHHHHCCCCeeeEeecC
Confidence 678999999999999999999999999988889999999999999999999987
No 13
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.95 E-value=2.2e-27 Score=197.87 Aligned_cols=135 Identities=32% Similarity=0.521 Sum_probs=124.4
Q ss_pred ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcc
Q psy12136 259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 337 (399)
Q Consensus 259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l 337 (399)
+|+|.++++|.+..+.|.|+|++|+||+..+..|.+||||++++.+.... .+++|++++++.||.|||+|.|.++..++
T Consensus 1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~ 80 (136)
T cd08404 1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEEL 80 (136)
T ss_pred CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHh
Confidence 59999999999999999999999999999998999999999999765433 57899999999999999999999987666
Q ss_pred cccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCC
Q psy12136 338 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 393 (399)
Q Consensus 338 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~ 393 (399)
....|.|+|||++.++++++||++.|++.+.+.+..||++|...|++++.+||.|.
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~~~~~~~~w~~l~~~~~~~i~~Wh~l~ 136 (136)
T cd08404 81 EDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRRQIAEWHMLC 136 (136)
T ss_pred CCCEEEEEEEECCCCCCCccEEEEEECCcCCCchHHHHHHHHhCCCCeeeEEEecC
Confidence 66789999999999999999999999999988899999999999999999999983
No 14
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.94 E-value=7.5e-27 Score=185.77 Aligned_cols=116 Identities=22% Similarity=0.252 Sum_probs=106.0
Q ss_pred eeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccc
Q psy12136 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSK 339 (399)
Q Consensus 260 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~ 339 (399)
|+|+++++|.+..+.|+|+|++|+||+ ..|.+||||++++.++.++.+++|+++++|.||+|||+|.|.|+.+++.+
T Consensus 1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~ 77 (118)
T cd08677 1 PKLHYSLSYDKQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLD 77 (118)
T ss_pred CeEEEEEEEcCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCC
Confidence 579999999999999999999999998 23569999999998755457889999999999999999999999999999
Q ss_pred cEEEEEEEeCCCCCCCeeeEEEEEccCC--CCCcchhhhhh
Q psy12136 340 QTLVITVWDKDYGKSNDYLGCLELCCNS--KGDRLRHWVDM 378 (399)
Q Consensus 340 ~~l~i~V~d~~~~~~d~~lG~~~i~l~~--~~~~~~~w~~l 378 (399)
..|.|+|||+|.++++++||++.+++++ .+.+.+||.+|
T Consensus 78 ~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 78 GTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred cEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 9999999999999999999999999996 47889999764
No 15
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.94 E-value=1.2e-26 Score=184.58 Aligned_cols=116 Identities=16% Similarity=0.274 Sum_probs=103.2
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccC
Q psy12136 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL 196 (399)
Q Consensus 117 G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l 196 (399)
|+|++++.|++..++|.|+|++|+||+ ..|.+||||+|+|+++.+ ..+++|+++++|+||+|||+|.| .|+.+++
T Consensus 1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k-~~k~kT~v~rktlnPvfnE~f~F-~v~~~~l 75 (118)
T cd08677 1 PKLHYSLSYDKQKAELHVNILEAENIS---VDAGCECYISGCVSVSEG-QKEAQTALKKLALHTQWEEELVF-PLPEEES 75 (118)
T ss_pred CeEEEEEEEcCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcC-ccEEEcceecCCCCCccccEEEE-eCCHHHh
Confidence 579999999999999999999999999 246699999999987544 46889999999999999999999 6999999
Q ss_pred CCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEe
Q psy12136 197 SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLN 237 (399)
Q Consensus 197 ~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~ 237 (399)
...+|.|+|||+|++++ ++||++.++++++..+.....|..
T Consensus 76 ~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~ 117 (118)
T cd08677 76 LDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVD 117 (118)
T ss_pred CCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhc
Confidence 99999999999999999 999999999998866655555544
No 16
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.94 E-value=4.8e-26 Score=189.40 Aligned_cols=133 Identities=38% Similarity=0.610 Sum_probs=122.8
Q ss_pred eeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCccc
Q psy12136 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELS 338 (399)
Q Consensus 260 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~ 338 (399)
|+|.++++|.+..++|.|.|++|+||+..+..+.+||||++++.+.... .+++|++++++.||.|||+|.|.+....+.
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~ 80 (134)
T cd00276 1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLE 80 (134)
T ss_pred CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhC
Confidence 8899999999999999999999999999888889999999999875443 578999999999999999999999866665
Q ss_pred ccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeC
Q psy12136 339 KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 392 (399)
Q Consensus 339 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L 392 (399)
...|.|+|||++..+++++||++.|++++.+.+.+||++|+..|++.+++||+|
T Consensus 81 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~wh~~ 134 (134)
T cd00276 81 EVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRKPIARWHKL 134 (134)
T ss_pred CcEEEEEEEecCCCCCCceeEEEEECCCCCCcHHHHHHHHHhCCCCceEEeeeC
Confidence 688999999999888899999999999998889999999999999999999987
No 17
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.94 E-value=5e-26 Score=186.52 Aligned_cols=122 Identities=29% Similarity=0.459 Sum_probs=111.5
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcc
Q psy12136 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIH-GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET 194 (399)
Q Consensus 116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~ 194 (399)
+|+|++++.|++..++|.|+|++|+||++++.. |.+||||+|+++|+.....++||+++++++||+|||+|.| .++..
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f-~v~~~ 79 (125)
T cd08393 1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRY-KVERE 79 (125)
T ss_pred CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEE-ECCHH
Confidence 599999999999999999999999999999976 8899999999998765556789999999999999999999 68888
Q ss_pred cCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEee
Q psy12136 195 DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 238 (399)
Q Consensus 195 ~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L 238 (399)
++....|.|+|||++..++ ++||++.|+|.++...+....|++|
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 8888899999999999888 9999999999999877777778776
No 18
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.93 E-value=3.3e-25 Score=181.84 Aligned_cols=122 Identities=28% Similarity=0.396 Sum_probs=108.6
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcc
Q psy12136 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIH-GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET 194 (399)
Q Consensus 116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~ 194 (399)
.|+|++++.|++..++|.|+|++|+||++++.. |.+||||+|+++|+.....++||+++++++||+|||+|.| .++..
T Consensus 1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f-~v~~~ 79 (128)
T cd08392 1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKY-VVEAD 79 (128)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEE-EcCHH
Confidence 499999999999999999999999999999875 8999999999999776567889999999999999999999 58888
Q ss_pred cCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCc---ceeEEEee
Q psy12136 195 DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI---SRDLCLNL 238 (399)
Q Consensus 195 ~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~---~~~~~~~L 238 (399)
++....|.|.|||++..++ ++||++.|+|+++.... ....|++|
T Consensus 80 ~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 80 LLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred HhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 8888999999999999878 99999999999986543 33455554
No 19
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.93 E-value=4.4e-25 Score=180.80 Aligned_cols=123 Identities=30% Similarity=0.511 Sum_probs=111.4
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCC-CCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcc
Q psy12136 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDI-HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET 194 (399)
Q Consensus 116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~-~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~ 194 (399)
.|+|++++.|++..++|.|+|++|+||++.+. .+.+||||+|++.|+.....++||++++++.||+|||+|.| .++..
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f-~i~~~ 79 (125)
T cd04029 1 SGEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKY-SISHS 79 (125)
T ss_pred CcEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEE-ECCHH
Confidence 49999999999999999999999999998875 47899999999998765557889999999999999999999 58887
Q ss_pred cCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136 195 DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 239 (399)
Q Consensus 195 ~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~ 239 (399)
++....|.|.|||++..++ ++||++.|+|.++...+....|++|+
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 80 QLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred HhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 7877899999999999888 99999999999999888888888773
No 20
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.93 E-value=3.8e-25 Score=180.33 Aligned_cols=119 Identities=29% Similarity=0.492 Sum_probs=107.2
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccC
Q psy12136 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL 196 (399)
Q Consensus 117 G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l 196 (399)
|+|++++.|+ .++|.|+|++|+||++.+ .+.+||||+|++.|+.....++||++++++.||+|||+|.|..++..++
T Consensus 2 G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l 78 (122)
T cd08381 2 GQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDL 78 (122)
T ss_pred CeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHh
Confidence 8999999998 799999999999999999 8899999999999876556789999999999999999999943366777
Q ss_pred CCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEee
Q psy12136 197 SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 238 (399)
Q Consensus 197 ~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L 238 (399)
....|+|+|||++..++ ++||++.++|.++...+....|+.|
T Consensus 79 ~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 79 QQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 78899999999999987 9999999999999877766777766
No 21
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.93 E-value=6.9e-25 Score=187.36 Aligned_cols=135 Identities=35% Similarity=0.552 Sum_probs=120.7
Q ss_pred ceeEEEEEeeec------------cceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceec
Q psy12136 259 HGKIFLTLCFST------------KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFN 325 (399)
Q Consensus 259 ~G~l~l~l~~~~------------~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wn 325 (399)
+|+|.+++.|.| ..+.|.|+|++|+||+..+..+.+||||++++.+...+ .+++|++++++.||.||
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn 80 (162)
T cd04020 1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN 80 (162)
T ss_pred CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence 599999999999 45899999999999999988899999999999765444 78999999999999999
Q ss_pred ceEEEEe-ccCcccccEEEEEEEeCCCCCCCeeeEEEEEccCC-------------CCCcchhhhhhhcCCCCceeeEEe
Q psy12136 326 EEFAIET-KITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS-------------KGDRLRHWVDMMKYPDHKHEGIHN 391 (399)
Q Consensus 326 e~f~f~v-~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~-------------~~~~~~~w~~l~~~p~~~~~~Wh~ 391 (399)
|+|.|.+ ...++.+..|.|+|||++.++++++||++.+++.+ .+.+..||++|+.+|+.++.+..+
T Consensus 81 E~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~~~~~w~~~~~~p~~~~~~~~~ 160 (162)
T cd04020 81 HTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGEEILLWQKMLDNPNSWVEGTLP 160 (162)
T ss_pred CEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCChHHHHHHHHHHhCCCCeEEEEEe
Confidence 9999985 34456667899999999999889999999999885 367899999999999999999998
Q ss_pred CC
Q psy12136 392 LS 393 (399)
Q Consensus 392 L~ 393 (399)
|+
T Consensus 161 ~~ 162 (162)
T cd04020 161 LR 162 (162)
T ss_pred cC
Confidence 84
No 22
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.93 E-value=5.1e-25 Score=179.22 Aligned_cols=119 Identities=24% Similarity=0.360 Sum_probs=106.5
Q ss_pred EEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCC-CceEecccccCCCCCeecceEEeceeCcccC
Q psy12136 118 SIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKT-SHRLRTKTCLRTINPEFHEKLTFYSVSETDL 196 (399)
Q Consensus 118 ~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~-~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l 196 (399)
+|++++.|++..++|.|+|++|+||++.+..+.+||||+++|+|+... ..++||++++++.||+|||+|.| .++.+++
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f-~v~~~~L 80 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRV-PISSTKL 80 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEE-ECCHHHh
Confidence 699999999999999999999999999988889999999999997754 36899999999999999999999 5999999
Q ss_pred CCceEEEEEEEcCCCCC-cceeeEEecCcccCCCc-ceeEEEe
Q psy12136 197 SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI-SRDLCLN 237 (399)
Q Consensus 197 ~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~-~~~~~~~ 237 (399)
....|+|+|||++..++ ++||++.|+|+++.... ....|+.
T Consensus 81 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~ 123 (124)
T cd08680 81 YQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYN 123 (124)
T ss_pred hcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCcccccccc
Confidence 99999999999999888 99999999999996553 3344443
No 23
>KOG2059|consensus
Probab=99.93 E-value=3.1e-25 Score=216.11 Aligned_cols=236 Identities=25% Similarity=0.361 Sum_probs=192.0
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136 129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 208 (399)
Q Consensus 129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~ 208 (399)
.+.|.|+|.+|+||++.+..|..||||.|.+. .....||.++.+++.|.|.|+|.| .++.. -..|.|.|||.
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD----~E~v~RT~tv~ksL~PF~gEe~~~-~iP~~---F~~l~fYv~D~ 75 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD----QEEVCRTATVEKSLCPFFGEEFYF-EIPRT---FRYLSFYVWDR 75 (800)
T ss_pred ccceeEEEeecccCCCCCCCCCcCcceEEeec----chhhhhhhhhhhhcCCccccceEE-ecCcc---eeeEEEEEecc
Confidence 46799999999999999999999999999996 357899999999999999999999 57654 47899999999
Q ss_pred CCCCC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeecc--ceeEEEEEEeeecC
Q psy12136 209 DKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTK--KRALIVNLIKCTNL 285 (399)
Q Consensus 209 ~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~~--~~~L~v~v~~a~~L 285 (399)
| .++ +.||.+.|.=.+|......+.|+.|.+ +++ .....|++++.+.+.+. ...+...++.++++
T Consensus 76 d-~~~D~~IGKvai~re~l~~~~~~d~W~~L~~---VD~--------dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~ 143 (800)
T KOG2059|consen 76 D-LKRDDIIGKVAIKREDLHMYPGKDTWFSLQP---VDP--------DSEVQGKVHLELALTEAIQSSGLVCHVLKTRQG 143 (800)
T ss_pred c-cccccccceeeeeHHHHhhCCCCccceeccc---cCC--------ChhhceeEEEEEEeccccCCCcchhhhhhhccc
Confidence 9 666 999999999989887778888988875 222 24689999999988764 45677888888888
Q ss_pred CCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccC-------------cccccEEEEEEEe-CCC
Q psy12136 286 IPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT-------------ELSKQTLVITVWD-KDY 351 (399)
Q Consensus 286 ~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-------------~l~~~~l~i~V~d-~~~ 351 (399)
.+...+ .+|||+++.+.+....+..+|+++++|.+|.|+|.|.|.+... +...-.|.+.+|+ ++.
T Consensus 144 ~P~~~~-~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~ 222 (800)
T KOG2059|consen 144 LPIING-QCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNL 222 (800)
T ss_pred CceeCC-CCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhh
Confidence 776544 4999999998765433668999999999999999999998754 1112468899998 556
Q ss_pred CCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCCCC
Q psy12136 352 GKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL 397 (399)
Q Consensus 352 ~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~~~ 397 (399)
...++|+|++.+++.. |. -....+.|+.|+|++.
T Consensus 223 ~~~~~FlGevrv~v~~-------~~-----~~s~p~~W~~Lqp~~~ 256 (800)
T KOG2059|consen 223 VINDVFLGEVRVPVDV-------LR-----QKSSPAAWYYLQPRPN 256 (800)
T ss_pred hhhhhhceeEEeehhh-------hh-----hccCccceEEEecCCC
Confidence 6669999999999865 21 1224688999988764
No 24
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.92 E-value=1.3e-24 Score=177.91 Aligned_cols=122 Identities=28% Similarity=0.404 Sum_probs=111.9
Q ss_pred cceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcc
Q psy12136 115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET 194 (399)
Q Consensus 115 ~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~ 194 (399)
.+|+|++++.|++..++|.|+|++|+||++.+..+.+||||++.++|.+. +++||+++++ .||+|||+|.|..++.+
T Consensus 1 ~~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~--~~~kTkv~~~-~nP~fnE~F~f~~i~~~ 77 (124)
T cd08389 1 KCGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKK--QRAKTKVQRG-PNPVFNETFTFSRVEPE 77 (124)
T ss_pred CCEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCc--ceeecccccC-CCCcccCEEEECCCCHH
Confidence 36999999999999999999999999999999888999999999988653 6889999887 99999999999558888
Q ss_pred cCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136 195 DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 239 (399)
Q Consensus 195 ~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~ 239 (399)
++....|.|.|||++..++ ++||++.|+|+++..+.....|++|+
T Consensus 78 ~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 78 ELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred HhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 8888999999999999887 99999999999999888888898885
No 25
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.92 E-value=1.2e-24 Score=178.28 Aligned_cols=123 Identities=35% Similarity=0.534 Sum_probs=108.4
Q ss_pred ceeEEEEEeeeccceeEEEEEEeeecCCCCCCC-CCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCc
Q psy12136 259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITE 336 (399)
Q Consensus 259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~-g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~ 336 (399)
+|+|++++.|.+..+.|.|+|++|+||++++.. |.+||||++++.++... .+++|++++++.||+|||+|.|.+...+
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~ 80 (125)
T cd08393 1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREE 80 (125)
T ss_pred CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHH
Confidence 599999999999999999999999999999875 88999999999876544 6789999999999999999999998777
Q ss_pred ccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCC
Q psy12136 337 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 393 (399)
Q Consensus 337 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~ 393 (399)
+....|.|+|||++.++++++||++.|+|.... ++.....||+|+
T Consensus 81 l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~------------~~~~~~~W~~L~ 125 (125)
T cd08393 81 LPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWD------------WSNTQPTWYPLQ 125 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeEEEEEecCccc------------cCCCCcceEECc
Confidence 877899999999999999999999999998754 223456777764
No 26
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.92 E-value=2.1e-24 Score=176.81 Aligned_cols=123 Identities=33% Similarity=0.535 Sum_probs=109.2
Q ss_pred ceeEEEEEeeeccceeEEEEEEeeecCCCCCC-CCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCc
Q psy12136 259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITE 336 (399)
Q Consensus 259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~-~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~ 336 (399)
.|+|++++.|.+..+.|.|.|++|+||++.+. .|.+||||++++.++..+ .++||++++++.||+|||+|.|.+...+
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~ 80 (125)
T cd04029 1 SGEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQ 80 (125)
T ss_pred CcEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHH
Confidence 49999999999999999999999999998765 578999999999876544 6889999999999999999999998777
Q ss_pred ccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCC
Q psy12136 337 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 393 (399)
Q Consensus 337 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~ 393 (399)
+.+..|.|.|||++..+++++||++.|++.+.. ++..+..|++|+
T Consensus 81 l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~------------~~~~~~~w~~l~ 125 (125)
T cd04029 81 LETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWN------------FDSQHEECLPLH 125 (125)
T ss_pred hCCCEEEEEEEECCCCCCCcEEEEEEEeCCccc------------ccCCcccEEECc
Confidence 777899999999999999999999999998744 445678888875
No 27
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.92 E-value=2.3e-24 Score=176.83 Aligned_cols=125 Identities=27% Similarity=0.378 Sum_probs=108.5
Q ss_pred ceeEEEEEeeeccceeEEEEEEeeecCCCCCCC-CCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCc
Q psy12136 259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITE 336 (399)
Q Consensus 259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~-g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~ 336 (399)
.|+|.+++.|.+..+.|.|.|++|+||++++.. |.+||||++++.++.+. .++||++++++.||+|||+|.|.+...+
T Consensus 1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~ 80 (128)
T cd08392 1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADL 80 (128)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHH
Confidence 489999999999999999999999999998874 89999999999876654 6889999999999999999999998778
Q ss_pred ccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeC
Q psy12136 337 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 392 (399)
Q Consensus 337 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L 392 (399)
+.+..|.|.|||++.++++++||++.|+|.+.. +.+....+..||+|
T Consensus 81 l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~---------~~~~~~~~~~W~~l 127 (128)
T cd08392 81 LSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWD---------FEDTDSQRFLWYPL 127 (128)
T ss_pred hCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcc---------cCCCCccccceEEC
Confidence 888899999999999889999999999998743 11223345667766
No 28
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.92 E-value=6.6e-24 Score=176.78 Aligned_cols=122 Identities=25% Similarity=0.341 Sum_probs=106.5
Q ss_pred CCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCC-CCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEecee
Q psy12136 113 DTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191 (399)
Q Consensus 113 ~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v 191 (399)
...+|+|++++.| ..++|.|+|++|+||++.+ ..|.+||||+++|+|++....++||+++++++||+|||+|.| .+
T Consensus 14 ~~~~G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f-~v 90 (146)
T cd04028 14 SPSMGDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVF-DV 90 (146)
T ss_pred CCCcceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEE-EE
Confidence 3468999999999 4789999999999999874 568899999999998776567899999999999999999999 46
Q ss_pred CcccCCCceEEEEEE-EcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136 192 SETDLSLQSLHILVL-DDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK 240 (399)
Q Consensus 192 ~~~~l~~~~L~~~V~-d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~ 240 (399)
+ +....|.|+|| |++..++ ++||++.|+|+.+..+.....|+.|.+
T Consensus 91 ~---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~ 138 (146)
T cd04028 91 S---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFP 138 (146)
T ss_pred c---CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCC
Confidence 5 45789999999 5787777 999999999999987777778888864
No 29
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.91 E-value=8.7e-24 Score=173.84 Aligned_cols=122 Identities=34% Similarity=0.536 Sum_probs=107.8
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcc
Q psy12136 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIH-GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET 194 (399)
Q Consensus 116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~ 194 (399)
+|+|++++.|++..++|.|+|++|+||+..+.. +.+||||+|++.+.+ .+++||++++++.||+|||+|.|..++..
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~--~~~~kT~v~~~t~nP~wnE~F~f~~~~~~ 79 (128)
T cd08388 2 LGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEK--EHKVKTRVLRKTRNPVYDETFTFYGIPYN 79 (128)
T ss_pred CeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCc--CceeeccEEcCCCCCceeeEEEEcccCHH
Confidence 699999999999999999999999999998876 889999999998754 35789999999999999999999556777
Q ss_pred cCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCC--cceeEEEeec
Q psy12136 195 DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH--ISRDLCLNLC 239 (399)
Q Consensus 195 ~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~--~~~~~~~~L~ 239 (399)
++....|+|.|||++..++ ++||++.++|+++... .....|++|+
T Consensus 80 ~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 80 QLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred HhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 7777789999999999888 9999999999999765 4566777764
No 30
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.91 E-value=4.4e-24 Score=173.74 Aligned_cols=117 Identities=18% Similarity=0.310 Sum_probs=105.1
Q ss_pred eEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC--ceEeecceeCCCCceecceEEEEeccCccc
Q psy12136 261 KIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS 338 (399)
Q Consensus 261 ~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l~ 338 (399)
+|.+++.|.+..++|.|+|++|+||++++..+.+||||++++.++.++ .+++|++++++.||+|||+|.|.++.+++.
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 689999999999999999999999999988889999999999987753 589999999999999999999999999999
Q ss_pred ccEEEEEEEeCCCCCCCeeeEEEEEccCCCC---Ccchhhhh
Q psy12136 339 KQTLVITVWDKDYGKSNDYLGCLELCCNSKG---DRLRHWVD 377 (399)
Q Consensus 339 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~---~~~~~w~~ 377 (399)
+..|.|+|||++.++++++||++.|+|+... ....+||+
T Consensus 82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~ 123 (124)
T cd08680 82 QKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYN 123 (124)
T ss_pred cCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCcccccccc
Confidence 9999999999999999999999999988642 23455553
No 31
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.91 E-value=4.8e-24 Score=176.49 Aligned_cols=110 Identities=26% Similarity=0.320 Sum_probs=101.4
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 195 (399)
Q Consensus 116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~ 195 (399)
.|+|++++.|++..++|.|+|++|+||+..+..+.+||||+|+++|++....++||+++++++||+|||+|.| .++..+
T Consensus 1 ~G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F-~v~~~~ 79 (136)
T cd08406 1 VGEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIF-SVPAIV 79 (136)
T ss_pred CcEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEE-ECCHHH
Confidence 4999999999999999999999999999999889999999999998766556789999999999999999999 699888
Q ss_pred CCCceEEEEEEEcCCCCC-cceeeEEecCccc
Q psy12136 196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRL 226 (399)
Q Consensus 196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l 226 (399)
+....|+|+|||++..++ ++||++.|+....
T Consensus 80 l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~ 111 (136)
T cd08406 80 LQDLSLRVTVAESTEDGKTPNVGHVIIGPAAS 111 (136)
T ss_pred hCCcEEEEEEEeCCCCCCCCeeEEEEECCCCC
Confidence 989999999999999888 9999999987653
No 32
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.91 E-value=5.2e-24 Score=176.16 Aligned_cols=120 Identities=23% Similarity=0.303 Sum_probs=104.9
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCC--CCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCc
Q psy12136 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDI--HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE 193 (399)
Q Consensus 116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~ 193 (399)
.|+|+++|.|.+..++|.|.|++|+||++.+. .+.+||||+|+++++.....++||+++++++||+|||.|.| .++.
T Consensus 1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F-~v~~ 79 (138)
T cd08407 1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMF-ELPS 79 (138)
T ss_pred CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEE-ECCH
Confidence 39999999999999999999999999999983 34589999999998766667899999999999999999999 6999
Q ss_pred ccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEee
Q psy12136 194 TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 238 (399)
Q Consensus 194 ~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L 238 (399)
+++....|.|+|||++..++ ++||++.+++.. .+.....|..+
T Consensus 80 ~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~m 123 (138)
T cd08407 80 ELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEM 123 (138)
T ss_pred HHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHH
Confidence 99989999999999999988 999999999975 33333444444
No 33
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.91 E-value=1.1e-23 Score=171.67 Aligned_cols=108 Identities=31% Similarity=0.533 Sum_probs=98.0
Q ss_pred ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEe-ccCc
Q psy12136 259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIET-KITE 336 (399)
Q Consensus 259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v-~~~~ 336 (399)
.|+|.+++.|. .+.|.|.|++|+||+.++ .+.+||||++++.+...+ .+++|++++++.||+|||+|.|.+ +..+
T Consensus 1 ~G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~ 77 (122)
T cd08381 1 GGQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVED 77 (122)
T ss_pred CCeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHH
Confidence 38999999999 689999999999999999 889999999999876544 789999999999999999999997 5566
Q ss_pred ccccEEEEEEEeCCCCCCCeeeEEEEEccCCCC
Q psy12136 337 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG 369 (399)
Q Consensus 337 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~ 369 (399)
+....|.|+|||++.++++++||++.|++.+..
T Consensus 78 l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~ 110 (122)
T cd08381 78 LQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLD 110 (122)
T ss_pred hCCCEEEEEEEeCCCCcCCcEEEEEEEeccccc
Confidence 777899999999999989999999999998744
No 34
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.91 E-value=2.6e-23 Score=173.20 Aligned_cols=124 Identities=23% Similarity=0.341 Sum_probs=105.9
Q ss_pred ccceeEEEEEeeeccceeEEEEEEeeecCCCCC-CCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEecc
Q psy12136 257 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKI 334 (399)
Q Consensus 257 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~-~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~ 334 (399)
...|+|.+++.|. .+.|.|+|++|+||++.+ ..|.+||||++++.++..+ .++||+++++++||+|||+|.|.+.
T Consensus 15 ~~~G~l~lsl~y~--~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~- 91 (146)
T cd04028 15 PSMGDIQLGLYDK--KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS- 91 (146)
T ss_pred CCcceEEEEEEeC--CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc-
Confidence 5689999999994 689999999999998864 5688999999999886655 6999999999999999999999997
Q ss_pred CcccccEEEEEEE-eCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCCCC
Q psy12136 335 TELSKQTLVITVW-DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL 397 (399)
Q Consensus 335 ~~l~~~~l~i~V~-d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~~~ 397 (399)
+.+..|.|+|| |++.++++++||++.|+|+... .+.....||.|.++..
T Consensus 92 --l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~------------~~~~~~~Wy~L~~~~~ 141 (146)
T cd04028 92 --PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLD------------LSNLVIGWYKLFPTSS 141 (146)
T ss_pred --CCCCEEEEEEEeCCCCCCCCceEEEEEEEccccc------------CCCCceeEEecCCccc
Confidence 56789999999 6788888999999999998753 2334577888887643
No 35
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.91 E-value=2.1e-23 Score=171.08 Aligned_cols=122 Identities=34% Similarity=0.562 Sum_probs=109.8
Q ss_pred cceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcc
Q psy12136 115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET 194 (399)
Q Consensus 115 ~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~ 194 (399)
.+|+|+++++|+...++|.|+|++|+||++.+..+.+||||+|++.+... .++||++++++.||+|||+|.| .++..
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f-~i~~~ 77 (124)
T cd08385 1 KLGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFTF-KVPYS 77 (124)
T ss_pred CccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCC--CceecccCcCCCCCceeeeEEE-eCCHH
Confidence 36999999999999999999999999999999889999999999987543 5789999999999999999999 57766
Q ss_pred cCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136 195 DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 239 (399)
Q Consensus 195 ~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~ 239 (399)
++....|.|+|||++..++ ++||++.++|.++..+.....|+.|+
T Consensus 78 ~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 78 ELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred HhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 6767899999999999887 99999999999998877778888774
No 36
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.91 E-value=2.2e-23 Score=170.97 Aligned_cols=121 Identities=30% Similarity=0.574 Sum_probs=110.3
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 195 (399)
Q Consensus 116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~ 195 (399)
+|+|++++.|++..+.|.|+|++|+||++.+..+.+||||+|++.+++. ..+||++++++.||+|||+|.| .++..+
T Consensus 2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~--~~~kT~v~~~t~~P~wne~f~f-~v~~~~ 78 (124)
T cd08387 2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRS--NTKQSKIHKKTLNPEFDESFVF-EVPPQE 78 (124)
T ss_pred CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCC--CcEeCceEcCCCCCCcccEEEE-eCCHHH
Confidence 6999999999999999999999999999999889999999999986543 5789999999999999999999 588777
Q ss_pred CCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136 196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 239 (399)
Q Consensus 196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~ 239 (399)
+....|.|+|||++..++ ++||++.++|+++..++....|+.|+
T Consensus 79 l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 79 LPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred hCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 777899999999999887 99999999999999887888888874
No 37
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.90 E-value=5e-23 Score=169.56 Aligned_cols=122 Identities=30% Similarity=0.475 Sum_probs=110.2
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 195 (399)
Q Consensus 116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~ 195 (399)
.|+|++++.|++..++|.|+|++|+||+..+..+.+||||+|++.+++....++||++++++.||+|||+|.| .++..+
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f-~i~~~~ 80 (127)
T cd04030 2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEF-PVSLEE 80 (127)
T ss_pred CeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEE-ecCHHH
Confidence 6999999999999999999999999999999889999999999988665567899999999999999999999 587777
Q ss_pred CCCceEEEEEEEcCCC--CC-cceeeEEecCcccCCCcceeEEEee
Q psy12136 196 LSLQSLHILVLDDDKY--GH-DFLGEARFPLNRLRPHISRDLCLNL 238 (399)
Q Consensus 196 l~~~~L~~~V~d~~~~--~~-~~lG~~~i~l~~l~~~~~~~~~~~L 238 (399)
+....|.|.|||++.. ++ ++||++.++|.++..+.....|+.|
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 7778999999999875 55 9999999999999877777778776
No 38
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.90 E-value=4.9e-23 Score=168.63 Aligned_cols=121 Identities=29% Similarity=0.525 Sum_probs=108.3
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEecCCCCCC-CCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 195 (399)
Q Consensus 117 G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~ 195 (399)
|+|++++.|+...+.|.|+|++|+||+..+ ..+.+||||+|++.|+.....+++|++++++.||+|||+|.| .++..+
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f-~i~~~~ 79 (123)
T cd08521 1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKY-HISKSQ 79 (123)
T ss_pred CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEE-eCCHHH
Confidence 899999999999999999999999999988 678899999999987655456889999999999999999999 577777
Q ss_pred CCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEee
Q psy12136 196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 238 (399)
Q Consensus 196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L 238 (399)
+....|.|.|||++..++ ++||++.++|+++..+.....|++|
T Consensus 80 l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 80 LETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred hCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 777899999999998888 9999999999999877666777765
No 39
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.90 E-value=4.7e-23 Score=167.08 Aligned_cols=117 Identities=26% Similarity=0.424 Sum_probs=101.6
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccC
Q psy12136 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL 196 (399)
Q Consensus 117 G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l 196 (399)
|+|+++++| ..++|.|+|++|+||++.+ .+.+||||+|+++|+.....++||++++++.||+|||+|.| .++.+++
T Consensus 1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f-~v~~~~~ 76 (119)
T cd08685 1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSF-DVNERDY 76 (119)
T ss_pred CEEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEE-EcChHHh
Confidence 789999999 6899999999999999998 78899999999998766567889999999999999999999 5777666
Q ss_pred CCceEEEEEEEcCCCC-C-cceeeEEecCcccCCCcceeEEEee
Q psy12136 197 SLQSLHILVLDDDKYG-H-DFLGEARFPLNRLRPHISRDLCLNL 238 (399)
Q Consensus 197 ~~~~L~~~V~d~~~~~-~-~~lG~~~i~l~~l~~~~~~~~~~~L 238 (399)
. ..|.|+|||++... + ++||++.|+|.++..+.....|+.|
T Consensus 77 ~-~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 77 Q-KRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred C-CEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 4 46889999999874 4 8999999999999876666666654
No 40
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.90 E-value=9.5e-23 Score=167.42 Aligned_cols=123 Identities=30% Similarity=0.442 Sum_probs=105.7
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 195 (399)
Q Consensus 116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~ 195 (399)
+|+|++++.|++..++|.|+|++|++|+..+..+.+||||+|++.++.....++||++++++.||+|||+|.|..++..+
T Consensus 2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~ 81 (125)
T cd04031 2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRET 81 (125)
T ss_pred cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHH
Confidence 69999999999999999999999999999998899999999999875544578899999999999999999995345566
Q ss_pred CCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136 196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 239 (399)
Q Consensus 196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~ 239 (399)
+....|.|+|||++..++ ++||++.++|.+... .....|++|+
T Consensus 82 l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L~ 125 (125)
T cd04031 82 LKERTLEVTVWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPLQ 125 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeeEEEEecccccc-cCCcceEECc
Confidence 667899999999999887 999999999998332 3345677663
No 41
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.90 E-value=1.1e-22 Score=167.13 Aligned_cols=122 Identities=34% Similarity=0.563 Sum_probs=109.0
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 195 (399)
Q Consensus 116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~ 195 (399)
+|+|++++.|.+...+|.|+|++|+||+..+..+.+||||+|++.++. ..+.+|++++++.||+|||+|.|..++.+.
T Consensus 2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~--~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~ 79 (125)
T cd08386 2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDK--KHKLETKVKRKNLNPHWNETFLFEGFPYEK 79 (125)
T ss_pred ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCC--CcceeeeeecCCCCCccceeEEEcccCHHH
Confidence 599999999999999999999999999999988999999999997654 357899999999999999999995345555
Q ss_pred CCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136 196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 239 (399)
Q Consensus 196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~ 239 (399)
+....|.|+|||++..++ ++||++.+++.++..+.....|+.|.
T Consensus 80 l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 80 LQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred hCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 666789999999999887 99999999999999888888888875
No 42
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.89 E-value=2.9e-22 Score=164.82 Aligned_cols=125 Identities=30% Similarity=0.466 Sum_probs=107.2
Q ss_pred ceeEEEEEeeeccceeEEEEEEeeecCCCCCCC-CCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEE-EeccCc
Q psy12136 259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAI-ETKITE 336 (399)
Q Consensus 259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~-g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f-~v~~~~ 336 (399)
+|+|.+++.|.+....|.|+|++|+||+..+.. +.+||||++++.+.. +.++||++++++.||+|||+|.| .+...+
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~-~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~ 80 (128)
T cd08388 2 LGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEK-EHKVKTRVLRKTRNPVYDETFTFYGIPYNQ 80 (128)
T ss_pred CeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCc-CceeeccEEcCCCCCceeeEEEEcccCHHH
Confidence 699999999999999999999999999998875 889999999997643 36789999999999999999999 566566
Q ss_pred ccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCC
Q psy12136 337 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 394 (399)
Q Consensus 337 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~ 394 (399)
+.+..|.|+|||++.++++++||++.|+|.+..- ..+.+.+.|.+|+|
T Consensus 81 ~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~----------~~~~~~~~~~~~~~ 128 (128)
T cd08388 81 LQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADL----------LNEGELLVSREIQP 128 (128)
T ss_pred hCCCEEEEEEEEcCCCCCCceeEEEEEeccccCC----------CCCceEEEEEeccC
Confidence 6667899999999999999999999999987541 11345778888875
No 43
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.89 E-value=1.8e-22 Score=165.18 Aligned_cols=122 Identities=21% Similarity=0.296 Sum_probs=109.4
Q ss_pred ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEE-eccCcc
Q psy12136 259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE-TKITEL 337 (399)
Q Consensus 259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~~l 337 (399)
.|+|.+++.|.+...+|.|+|++|+||++.+..|.+||||++.+.+.. +.+++|+++++ .||+|||+|.|. +...++
T Consensus 2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~-~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l 79 (124)
T cd08389 2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSK-KQRAKTKVQRG-PNPVFNETFTFSRVEPEEL 79 (124)
T ss_pred CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCC-cceeecccccC-CCCcccCEEEECCCCHHHh
Confidence 699999999999999999999999999999988999999999987753 37889999888 999999999998 877788
Q ss_pred cccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCC
Q psy12136 338 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 394 (399)
Q Consensus 338 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~ 394 (399)
.+..|.|+|||++.++++++||++.|+|+... +......|++|+|
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~------------~~~~~~~w~~L~p 124 (124)
T cd08389 80 NNMALRFRLYGVERMRKERLIGEKVVPLSQLN------------LEGETTVWLTLEP 124 (124)
T ss_pred ccCEEEEEEEECCCcccCceEEEEEEeccccC------------CCCCceEEEeCCC
Confidence 88999999999999999999999999998754 3446789999986
No 44
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.89 E-value=2.6e-22 Score=164.53 Aligned_cols=122 Identities=30% Similarity=0.459 Sum_probs=107.1
Q ss_pred ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCccc
Q psy12136 259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELS 338 (399)
Q Consensus 259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~ 338 (399)
+|+|++++.|.+..+.|.|+|++|+||+..+..|.+||||++++.+.. ..+++|++++++.||+|||+|.|.+...++.
T Consensus 2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~-~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~ 80 (124)
T cd08387 2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDR-SNTKQSKIHKKTLNPEFDESFVFEVPPQELP 80 (124)
T ss_pred CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCC-CCcEeCceEcCCCCCCcccEEEEeCCHHHhC
Confidence 699999999999999999999999999999988999999999997542 3678999999999999999999999877777
Q ss_pred ccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCC
Q psy12136 339 KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 393 (399)
Q Consensus 339 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~ 393 (399)
+..|.|+|||++.++++++||++.|++++.. .+.....|++|+
T Consensus 81 ~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~------------~~~~~~~W~~l~ 123 (124)
T cd08387 81 KRTLEVLLYDFDQFSRDECIGVVELPLAEVD------------LSEKLDLWRKIQ 123 (124)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEEeccccc------------CCCCcceEEECc
Confidence 7899999999999889999999999998754 122456777775
No 45
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.89 E-value=2.6e-22 Score=164.33 Aligned_cols=120 Identities=30% Similarity=0.456 Sum_probs=108.6
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEecCCCCCC-CCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 195 (399)
Q Consensus 117 G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~ 195 (399)
|+|++++.|++..++|.|+|++|+||+..+ ..+.+||||+|++.++.. ..++|++++++.||+|||.|.| .++...
T Consensus 1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~--~~~~T~v~~~~~~P~wne~f~f-~i~~~~ 77 (123)
T cd08390 1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDER--RSLQSKVKRKTQNPNFDETFVF-QVSFKE 77 (123)
T ss_pred CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCC--CceEeeeEcCCCCCccceEEEE-EcCHHH
Confidence 899999999999999999999999999998 678899999999987543 5678999999999999999999 577776
Q ss_pred CCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136 196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 239 (399)
Q Consensus 196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~ 239 (399)
+....|.|.|||++..++ ++||++.++|.++.....+..|++|+
T Consensus 78 l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 78 LQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred hcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 666789999999999877 99999999999999888888998885
No 46
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.88 E-value=8.7e-23 Score=169.93 Aligned_cols=122 Identities=25% Similarity=0.398 Sum_probs=106.2
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 195 (399)
Q Consensus 116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~ 195 (399)
+|+|++++.|++..++|.|+|++|+||++.+ .+.+||||+|++.++.....++||++++++.||+|||+|.| .++.++
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f-~i~~~~ 78 (137)
T cd08409 1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSF-KVTSRQ 78 (137)
T ss_pred CcEEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEE-ECCHHH
Confidence 5999999999999999999999999999998 77899999999988654446789999999999999999999 688888
Q ss_pred CCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136 196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 239 (399)
Q Consensus 196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~ 239 (399)
+....|.|+|||++..++ ++||++.++......+.....|..+.
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~ 123 (137)
T cd08409 79 LDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDML 123 (137)
T ss_pred hCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence 888999999999998877 99999999976665555555555443
No 47
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.88 E-value=3.3e-22 Score=170.86 Aligned_cols=124 Identities=30% Similarity=0.435 Sum_probs=109.7
Q ss_pred ceEEEEEEEEeC------------CCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeec
Q psy12136 116 LGSIELTVTYDS------------TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFH 183 (399)
Q Consensus 116 ~G~i~~~l~y~~------------~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wn 183 (399)
+|+|.+++.|.+ ..++|.|+|++|+||++.+..+.+||||+|++.++.....++||++++++.||+||
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn 80 (162)
T cd04020 1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN 80 (162)
T ss_pred CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence 599999999999 44899999999999999998899999999999886666678999999999999999
Q ss_pred ceEEeceeCcccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136 184 EKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 239 (399)
Q Consensus 184 e~f~f~~v~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~ 239 (399)
|+|.|..++..++....|.|+|||++..++ ++||++.+++.++........|+.+.
T Consensus 81 E~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 81 HTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred CEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence 999995455666767789999999999987 99999999999998776677777774
No 48
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.88 E-value=2.6e-22 Score=164.60 Aligned_cols=119 Identities=37% Similarity=0.639 Sum_probs=104.3
Q ss_pred ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCccc
Q psy12136 259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELS 338 (399)
Q Consensus 259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~ 338 (399)
.|+|.+++.|.+..+.|.|+|++|+||+..+..+.+||||++++.+.. +.+++|++++++.||+|||+|.|.+...++.
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~-~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~ 80 (124)
T cd08385 2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK-KKKFETKVHRKTLNPVFNETFTFKVPYSELG 80 (124)
T ss_pred ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCC-CCceecccCcCCCCCceeeeEEEeCCHHHhC
Confidence 699999999999999999999999999999888999999999997643 3688999999999999999999999866666
Q ss_pred ccEEEEEEEeCCCCCCCeeeEEEEEccCCC--CCcchhhhhh
Q psy12136 339 KQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVDM 378 (399)
Q Consensus 339 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~--~~~~~~w~~l 378 (399)
...|.|+|||++.++++++||++.|++++. +...++|++|
T Consensus 81 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 81 NKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred CCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 779999999999988999999999999874 3445555543
No 49
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.88 E-value=6.8e-22 Score=162.80 Aligned_cols=110 Identities=36% Similarity=0.616 Sum_probs=100.4
Q ss_pred ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcc
Q psy12136 259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 337 (399)
Q Consensus 259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l 337 (399)
.|+|.+++.|.+..++|.|+|++|+||+..+..+.+||||+|++.+.... .+++|++++++.||+|||+|.|.+...++
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l 81 (127)
T cd04030 2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEEL 81 (127)
T ss_pred CeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHh
Confidence 69999999999999999999999999999998899999999999865443 78999999999999999999999987777
Q ss_pred cccEEEEEEEeCCCC--CCCeeeEEEEEccCCC
Q psy12136 338 SKQTLVITVWDKDYG--KSNDYLGCLELCCNSK 368 (399)
Q Consensus 338 ~~~~l~i~V~d~~~~--~~d~~lG~~~i~l~~~ 368 (399)
....|.|.|||++.+ +++++||++.|++.+.
T Consensus 82 ~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l 114 (127)
T cd04030 82 KRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDL 114 (127)
T ss_pred cCCEEEEEEEECCcccCCCCceEEEEEEecccc
Confidence 778999999999875 6899999999999874
No 50
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.88 E-value=7.6e-22 Score=161.58 Aligned_cols=109 Identities=37% Similarity=0.578 Sum_probs=99.2
Q ss_pred eeEEEEEeeeccceeEEEEEEeeecCCCCC-CCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcc
Q psy12136 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 337 (399)
Q Consensus 260 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~-~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l 337 (399)
|+|.+++.|.+..+.|.|+|++|+||+..+ ..+.+||||++++.+.... .+++|++++++.||+|||+|.|.+...++
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l 80 (123)
T cd08521 1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQL 80 (123)
T ss_pred CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHh
Confidence 899999999999999999999999999988 6788999999999765443 67899999999999999999999987677
Q ss_pred cccEEEEEEEeCCCCCCCeeeEEEEEccCCC
Q psy12136 338 SKQTLVITVWDKDYGKSNDYLGCLELCCNSK 368 (399)
Q Consensus 338 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~ 368 (399)
....|.|+|||++.++++++||++.++++..
T Consensus 81 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l 111 (123)
T cd08521 81 ETRTLQLSVWHHDRFGRNTFLGEVEIPLDSW 111 (123)
T ss_pred CCCEEEEEEEeCCCCcCCceeeEEEEecccc
Confidence 6789999999999888999999999999874
No 51
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.88 E-value=6.4e-22 Score=160.44 Aligned_cols=105 Identities=25% Similarity=0.500 Sum_probs=91.9
Q ss_pred eeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCccc
Q psy12136 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELS 338 (399)
Q Consensus 260 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~ 338 (399)
|+|++++.| ..+.|.|+|++|+||+.++ .|.+||||++++.++..+ .+++|++++++.||+|||+|.|.+...++.
T Consensus 1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~ 77 (119)
T cd08685 1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQ 77 (119)
T ss_pred CEEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhC
Confidence 788988888 5689999999999999988 788999999999986554 688999999999999999999999765553
Q ss_pred ccEEEEEEEeCCCCC-CCeeeEEEEEccCCC
Q psy12136 339 KQTLVITVWDKDYGK-SNDYLGCLELCCNSK 368 (399)
Q Consensus 339 ~~~l~i~V~d~~~~~-~d~~lG~~~i~l~~~ 368 (399)
..|.|+|||++... ++++||++.|++.+.
T Consensus 78 -~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~ 107 (119)
T cd08685 78 -KRLLVTVWNKLSKSRDSGLLGCMSFGVKSI 107 (119)
T ss_pred -CEEEEEEECCCCCcCCCEEEEEEEecHHHh
Confidence 57899999999765 478999999999874
No 52
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.87 E-value=8.1e-22 Score=163.96 Aligned_cols=110 Identities=22% Similarity=0.337 Sum_probs=100.0
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCC-CCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLT-KTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 195 (399)
Q Consensus 117 G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~-~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~ 195 (399)
|+|++++.|++..++|.|+|++|+||++.+..+.+||||+|+++|+. ....++||++++++.||+|||+|.| .++.++
T Consensus 2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f-~i~~~~ 80 (138)
T cd08408 2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVF-QVALFQ 80 (138)
T ss_pred CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEE-ECCHHH
Confidence 78999999999999999999999999999988999999999999843 3335789999999999999999999 599888
Q ss_pred CCCceEEEEEEEcCCCCC-cceeeEEecCcccC
Q psy12136 196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR 227 (399)
Q Consensus 196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~ 227 (399)
+....|.|.|||++..++ ++||++.+++....
T Consensus 81 l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~ 113 (138)
T cd08408 81 LSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG 113 (138)
T ss_pred hCccEEEEEEEECCCCCCCcEEEEEEECCcCCC
Confidence 888999999999998888 99999999987654
No 53
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.87 E-value=1.1e-21 Score=161.18 Aligned_cols=109 Identities=33% Similarity=0.590 Sum_probs=98.3
Q ss_pred ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEe-ccCc
Q psy12136 259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIET-KITE 336 (399)
Q Consensus 259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v-~~~~ 336 (399)
.|+|.+++.|.+..++|.|+|++|+||+..+..+.+||||+|++.+.... .+++|++++++.||+|||+|.|.+ ...+
T Consensus 2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~ 81 (125)
T cd04031 2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRET 81 (125)
T ss_pred cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHH
Confidence 69999999999999999999999999999988899999999999765433 788999999999999999999985 3345
Q ss_pred ccccEEEEEEEeCCCCCCCeeeEEEEEccCC
Q psy12136 337 LSKQTLVITVWDKDYGKSNDYLGCLELCCNS 367 (399)
Q Consensus 337 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~ 367 (399)
+....|.|+|||++..+++++||++.+++.+
T Consensus 82 l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 82 LKERTLEVTVWDYDRDGENDFLGEVVIDLAD 112 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeeEEEEeccc
Confidence 6668999999999998889999999999987
No 54
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.87 E-value=2.3e-21 Score=158.67 Aligned_cols=123 Identities=49% Similarity=0.908 Sum_probs=107.4
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 195 (399)
Q Consensus 116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~ 195 (399)
.|+|++++.|++..+.|+|+|++|++|++.+..+.+||||+|++.++.....++||++++++.||+|||.|.|..+...+
T Consensus 1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~ 80 (123)
T cd04035 1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEED 80 (123)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHH
Confidence 49999999999999999999999999999988889999999999875544578999999999999999999994355555
Q ss_pred CCCceEEEEEEEcCCCCCcceeeEEecCcccCCCcceeEEEee
Q psy12136 196 LSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNL 238 (399)
Q Consensus 196 l~~~~L~~~V~d~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L 238 (399)
+....|.|+|||++..++++||++.++|+++..+..+++++.|
T Consensus 81 ~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 81 IQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred hCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeeccC
Confidence 6567899999999988349999999999999988777776553
No 55
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.87 E-value=6.1e-22 Score=164.97 Aligned_cols=121 Identities=28% Similarity=0.448 Sum_probs=104.9
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 195 (399)
Q Consensus 116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~ 195 (399)
+|+|.++++|++..++|.|+|++|+||+..+..+.+||||+|++.+++....+.||++++++.||+|||+|.| .++..+
T Consensus 1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f-~v~~~~ 79 (136)
T cd08404 1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVF-DIPSEE 79 (136)
T ss_pred CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEE-ECCHHH
Confidence 5999999999999999999999999999999899999999999987654445789999999999999999999 577777
Q ss_pred CCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136 196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 239 (399)
Q Consensus 196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~ 239 (399)
+....|.|+|||++..++ ++||++.+++.. .+.....|..+.
T Consensus 80 ~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~ 122 (136)
T cd08404 80 LEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVC 122 (136)
T ss_pred hCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHH
Confidence 767889999999999988 999999999998 233444555553
No 56
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.87 E-value=3.2e-21 Score=158.35 Aligned_cols=123 Identities=33% Similarity=0.476 Sum_probs=105.2
Q ss_pred ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEe-ccCcc
Q psy12136 259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIET-KITEL 337 (399)
Q Consensus 259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v-~~~~l 337 (399)
.|+|++++.|.+..+.|.|.|++|+||+..+..+.+||||++.+.+.. ..+++|++++++.||.|||+|.|.+ +...+
T Consensus 2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~-~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l 80 (125)
T cd08386 2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDK-KHKLETKVKRKNLNPHWNETFLFEGFPYEKL 80 (125)
T ss_pred ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCC-CcceeeeeecCCCCCccceeEEEcccCHHHh
Confidence 699999999999999999999999999999888899999999996532 3678999999999999999999984 33345
Q ss_pred cccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCC
Q psy12136 338 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 394 (399)
Q Consensus 338 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~ 394 (399)
....|.|+|||++..+++++||++.|++.+.. .+.....|+.|+|
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~------------~~~~~~~W~~l~~ 125 (125)
T cd08386 81 QQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVD------------LTEEQTFWKDLKP 125 (125)
T ss_pred CCCEEEEEEEeCCCCcCCcEeeEEEEeccccc------------CCCCcceEEecCC
Confidence 56789999999999889999999999998744 2334677887775
No 57
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.86 E-value=1e-21 Score=163.66 Aligned_cols=110 Identities=32% Similarity=0.520 Sum_probs=99.2
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 195 (399)
Q Consensus 116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~ 195 (399)
+|+|+++++|++..++|.|+|++|+||+..+..+.+||||+|++.++.....++||++++++.||+|||+|.| .++.+.
T Consensus 1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f-~i~~~~ 79 (136)
T cd08405 1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIF-NIPLER 79 (136)
T ss_pred CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEE-eCCHHH
Confidence 5999999999999999999999999999998889999999999976544446789999999999999999999 577666
Q ss_pred CCCceEEEEEEEcCCCCC-cceeeEEecCccc
Q psy12136 196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRL 226 (399)
Q Consensus 196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l 226 (399)
+....|.|+|||++..++ ++||++.+++.+.
T Consensus 80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred hCCCEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence 666789999999999887 9999999999886
No 58
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.86 E-value=3.3e-21 Score=157.20 Aligned_cols=107 Identities=13% Similarity=0.213 Sum_probs=95.7
Q ss_pred EEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCC-CCeecceEEeceeCcccC
Q psy12136 118 SIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTI-NPEFHEKLTFYSVSETDL 196 (399)
Q Consensus 118 ~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~-nP~wne~f~f~~v~~~~l 196 (399)
+|.++|+|.+..++|.|.|++|+||++....+..||||||++.+.++...++||++++++. ||+|||+|.| .|+.++.
T Consensus 2 el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~F-dv~~~~~ 80 (135)
T cd08692 2 ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIF-PVTQQEH 80 (135)
T ss_pred eEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEE-eCCchhh
Confidence 7899999999999999999999999998666778999999998877767899999999995 6999999999 6887654
Q ss_pred CCceEEEEEEEcCCCCC-cceeeEEecCccc
Q psy12136 197 SLQSLHILVLDDDKYGH-DFLGEARFPLNRL 226 (399)
Q Consensus 197 ~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l 226 (399)
...|.|+|||++..++ ++||++.++....
T Consensus 81 -~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 81 -GIQFLIKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred -eeEEEEEEEeCCCCcCCceEEEEEECCccC
Confidence 5889999999999888 9999999999764
No 59
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.86 E-value=6.4e-21 Score=156.06 Aligned_cols=122 Identities=29% Similarity=0.449 Sum_probs=105.6
Q ss_pred eeEEEEEeeeccceeEEEEEEeeecCCCCC-CCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCccc
Q psy12136 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELS 338 (399)
Q Consensus 260 G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~-~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~ 338 (399)
|+|.+++.|.+..++|.|.|++|+||+..+ ..+.+||||++++.+.. ...++|++++++.||+|||+|.|.+...++.
T Consensus 1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~-~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~ 79 (123)
T cd08390 1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE-RRSLQSKVKRKTQNPNFDETFVFQVSFKELQ 79 (123)
T ss_pred CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC-CCceEeeeEcCCCCCccceEEEEEcCHHHhc
Confidence 899999999999999999999999999988 67889999999997543 3567899999999999999999999766666
Q ss_pred ccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCC
Q psy12136 339 KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 394 (399)
Q Consensus 339 ~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~ 394 (399)
...|.|.|||++..+++++||++.|++++.. .......|++|+|
T Consensus 80 ~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~------------~~~~~~~w~~L~~ 123 (123)
T cd08390 80 RRTLRLSVYDVDRFSRHCIIGHVLFPLKDLD------------LVKGGVVWRDLEP 123 (123)
T ss_pred ccEEEEEEEECCcCCCCcEEEEEEEecccee------------cCCCceEEEeCCC
Confidence 6789999999998888999999999998744 2334567887765
No 60
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.86 E-value=5.2e-21 Score=154.34 Aligned_cols=109 Identities=23% Similarity=0.309 Sum_probs=92.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEec--CCCCCceEecccccCCCCCeecceEEeceeCcc-cCCCceEEEEEEE
Q psy12136 131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP--LTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET-DLSLQSLHILVLD 207 (399)
Q Consensus 131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~--~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~-~l~~~~L~~~V~d 207 (399)
+|+|+|++|++|+..+ .|.+||||+|++.. .....++++|+++.+++||+|||+|.| .++.+ .+....|+|.|||
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F-~v~~~~~~~~~~L~~~V~D 78 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQF-ILGNEDDPESYELHICVKD 78 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEE-EeeCcCCCceeEEEEEEEE
Confidence 5899999999999987 48999999999853 112235689999999999999999999 56543 5566789999999
Q ss_pred cCCCCC-cceeeEEecCcccCCCcceeEEEeeccc
Q psy12136 208 DDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKH 241 (399)
Q Consensus 208 ~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~ 241 (399)
++..++ ++||++.++|.++..++....|++|++.
T Consensus 79 ~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 79 YCFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred ecccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 998877 9999999999999998888899999764
No 61
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.86 E-value=5e-21 Score=159.50 Aligned_cols=110 Identities=33% Similarity=0.507 Sum_probs=99.3
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 195 (399)
Q Consensus 116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~ 195 (399)
+|+|.+++.|.+..++|.|+|++|++|+..+..+.+||||+|++.+.+....+++|++++++.||+|||+|.| .++..+
T Consensus 1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f-~i~~~~ 79 (136)
T cd08402 1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSF-EVPFEQ 79 (136)
T ss_pred CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEE-ECCHHH
Confidence 4999999999999999999999999999999889999999999986554456789999999999999999999 577777
Q ss_pred CCCceEEEEEEEcCCCCC-cceeeEEecCccc
Q psy12136 196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRL 226 (399)
Q Consensus 196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l 226 (399)
+....|.|+|||++..++ ++||++.+++...
T Consensus 80 l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 80 IQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred hCCCEEEEEEEeCCCCCCCceeEEEEECCccC
Confidence 766789999999999888 9999999999864
No 62
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.85 E-value=4.2e-21 Score=159.36 Aligned_cols=119 Identities=30% Similarity=0.463 Sum_probs=102.6
Q ss_pred EEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCC
Q psy12136 118 SIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS 197 (399)
Q Consensus 118 ~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~ 197 (399)
+|++++.|++..++|.|+|++|+||++.+..+.+||||+|++.++.....++||++++++.||+|||+|.| .++..++.
T Consensus 1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f-~~~~~~l~ 79 (133)
T cd08384 1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFY-DIKHSDLA 79 (133)
T ss_pred CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEE-ECCHHHhC
Confidence 48999999999999999999999999999889999999999988655557889999999999999999999 57777776
Q ss_pred CceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136 198 LQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 239 (399)
Q Consensus 198 ~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~ 239 (399)
...|.|+|||++..++ ++||++.+++... +.....|+.+.
T Consensus 80 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~--~~~~~~W~~~l 120 (133)
T cd08384 80 KKTLEITVWDKDIGKSNDYIGGLQLGINAK--GERLRHWLDCL 120 (133)
T ss_pred CCEEEEEEEeCCCCCCccEEEEEEEecCCC--CchHHHHHHHH
Confidence 7899999999998877 9999999999863 23334454443
No 63
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.85 E-value=1.1e-20 Score=152.88 Aligned_cols=117 Identities=17% Similarity=0.283 Sum_probs=97.1
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccC-CCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136 130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR-TINPEFHEKLTFYSVSETDLSLQSLHILVLDD 208 (399)
Q Consensus 130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~-t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~ 208 (399)
+.|.|+|++|++|+..+ .|.+||||+|.+. .+++||+++.+ +.||+|||+|.| .+... ...|.|+|||+
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg-----~~~~kT~v~~~~~~nP~WNe~F~f-~v~~~---~~~l~~~V~d~ 71 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVG-----HAVYETPTAYNGAKNPRWNKTIQC-TLPEG---VDSIYIEIFDE 71 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEEC-----CEEEEeEEccCCCCCCccCeEEEE-EecCC---CcEEEEEEEeC
Confidence 68999999999988776 7899999999994 47889999876 799999999999 46543 35799999999
Q ss_pred CCCCC-cceeeEEecCc-ccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136 209 DKYGH-DFLGEARFPLN-RLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 268 (399)
Q Consensus 209 ~~~~~-~~lG~~~i~l~-~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~ 268 (399)
+.+++ ++||++.+++. .+..++....|++|.+.. .....|+|+++++|
T Consensus 72 d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~------------~~~~~g~i~l~l~y 121 (121)
T cd04016 72 RAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQ------------GEDKEGMINLVFSY 121 (121)
T ss_pred CCCcCCceEEEEEEECchhccCCCCccccEeCcCcc------------CCCCceEEEEEEeC
Confidence 99988 99999999996 577777677888886421 12467999999987
No 64
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.85 E-value=8.2e-21 Score=157.75 Aligned_cols=110 Identities=29% Similarity=0.395 Sum_probs=97.7
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccC
Q psy12136 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL 196 (399)
Q Consensus 117 G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l 196 (399)
|+|++++.|.+..+.|.|+|++|+||+..+..+.+||||+|++.++.....+++|++++++.||+|||+|.| .++.+++
T Consensus 1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f-~i~~~~l 79 (135)
T cd08410 1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSF-KVPQEEL 79 (135)
T ss_pred CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEE-eCCHHHh
Confidence 899999999999999999999999999999889999999999976554456789999999999999999999 5877777
Q ss_pred CCceEEEEEEEcCCCCC-cceeeEEecCcccC
Q psy12136 197 SLQSLHILVLDDDKYGH-DFLGEARFPLNRLR 227 (399)
Q Consensus 197 ~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~ 227 (399)
....|.|+|||++..++ ++||++.|......
T Consensus 80 ~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~ 111 (135)
T cd08410 80 ENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSG 111 (135)
T ss_pred CCCEEEEEEEeCCCCCCCcEEEEEEEcCccCC
Confidence 77789999999999888 99999987664443
No 65
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.85 E-value=1e-20 Score=157.26 Aligned_cols=119 Identities=31% Similarity=0.493 Sum_probs=102.0
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccC
Q psy12136 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL 196 (399)
Q Consensus 117 G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l 196 (399)
|+|++++.|.+..++|+|+|++|++|++.+..+.+||||+|++.+.+....+++|++++++.||+|||+|.| .++.+.+
T Consensus 1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f-~i~~~~~ 79 (134)
T cd08403 1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVF-DVPPENV 79 (134)
T ss_pred CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEE-ECCHHHh
Confidence 899999999999999999999999999999999999999999976554456789999999999999999999 5777767
Q ss_pred CCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEee
Q psy12136 197 SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 238 (399)
Q Consensus 197 ~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L 238 (399)
....|.|+|||++..++ ++||++.+++... +.....|..+
T Consensus 80 ~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~--~~~~~~w~~~ 120 (134)
T cd08403 80 DNVSLIIAVVDYDRVGHNELIGVCRVGPNAD--GQGREHWNEM 120 (134)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEECCCCC--CchHHHHHHH
Confidence 66789999999999987 9999999998743 3333444444
No 66
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.85 E-value=1.8e-20 Score=151.25 Aligned_cols=109 Identities=20% Similarity=0.237 Sum_probs=89.2
Q ss_pred eEEEEEEeeecCCCCCCCCCCCcEEEEEEec--CCCC-ceEeecceeCCCCceecceEEEEeccC-cccccEEEEEEEeC
Q psy12136 274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKP--DLHK-RKYKTGVKWKTLNPIFNEEFAIETKIT-ELSKQTLVITVWDK 349 (399)
Q Consensus 274 ~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~--~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~-~l~~~~l~i~V~d~ 349 (399)
+|+|+|++|++|+..+ .|.+||||+|++.+ ...+ ++++|+++.++.||+|||+|.|.+... .+....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 5899999999999877 58999999999864 1122 578999999999999999999999754 45557899999999
Q ss_pred CCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136 350 DYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 395 (399)
Q Consensus 350 ~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~ 395 (399)
+..+++++||++.|++++.. ++.....|++|.+.
T Consensus 80 d~~~~dd~IG~~~l~l~~~~------------~~~~~~~w~~L~~~ 113 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIA------------QAGSCACWLPLGRR 113 (120)
T ss_pred cccCCCCEEEEEEEEHHHCc------------CCCcEEEEEECcCc
Confidence 98888999999999988743 33346778888654
No 67
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.85 E-value=1.5e-20 Score=157.50 Aligned_cols=132 Identities=27% Similarity=0.304 Sum_probs=101.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEecee-------------CcccCC
Q psy12136 131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV-------------SETDLS 197 (399)
Q Consensus 131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v-------------~~~~l~ 197 (399)
+|.|+|++|+||++ ..|.+||||+|++.+......++||+++++++||+|||+|.|. + +.+++.
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~-v~~~~~~~~~~~~~~~~~~~ 77 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFD-VTIDSSPEKKQFEMPEEDAE 77 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEE-EecccccccccccCCccccc
Confidence 48999999999998 5688999999999875544578899999999999999999994 5 334555
Q ss_pred CceEEEEEEEcCCCCC-cceeeEEecCcccCCC-cceeEEEeecccCCCCCccccccccccccceeEEEEE
Q psy12136 198 LQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH-ISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTL 266 (399)
Q Consensus 198 ~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~-~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l 266 (399)
...|.|.|||++..++ +|||++.|+|.++..+ .....|++|++......+.. .........|.|++.+
T Consensus 78 ~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 147 (148)
T cd04010 78 KLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPG-TRSSKDNSLGSLRLKI 147 (148)
T ss_pred EEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCC-CcccccCCcccEEEec
Confidence 5789999999998877 9999999999999876 56677888876433221111 1122345677777654
No 68
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.85 E-value=1.7e-20 Score=154.09 Aligned_cols=119 Identities=24% Similarity=0.378 Sum_probs=98.1
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCc---ccCCCceEEEEEEEc
Q psy12136 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE---TDLSLQSLHILVLDD 208 (399)
Q Consensus 132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~---~~l~~~~L~~~V~d~ 208 (399)
++|+|++|+||+..+..|.+||||+|.+. ..++||++++++.||+|||+|.| .++. ++.....|.|.|||+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~-----~~~~kT~v~~~t~nP~Wne~f~F-~v~~~~~~~~~~~~l~~~v~d~ 74 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG-----KEKYSTSVKEKTTSPVWKEECSF-ELPGLLSGNGNRATLQLTVMHR 74 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEEC-----CeeeeeeeecCCCCCEeCceEEE-EecCcccCCCcCCEEEEEEEEc
Confidence 57999999999999988999999999995 46889999999999999999999 5655 234567899999999
Q ss_pred CCCCC-cceeeEEecCcccC--CCcceeEEEeecccCCCCCccccccccccccceeEEEEE
Q psy12136 209 DKYGH-DFLGEARFPLNRLR--PHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTL 266 (399)
Q Consensus 209 ~~~~~-~~lG~~~i~l~~l~--~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l 266 (399)
+..++ ++||++.|+|.++. .+.....|++|..... ......|+|++++
T Consensus 75 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~----------~~~~~~Gei~l~~ 125 (126)
T cd08682 75 NLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPG----------KDDKERGEIEVDI 125 (126)
T ss_pred cccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCC----------CCccccceEEEEe
Confidence 99887 99999999999987 4555677888864211 1135689999876
No 69
>KOG0696|consensus
Probab=99.84 E-value=3.3e-21 Score=178.97 Aligned_cols=131 Identities=34% Similarity=0.605 Sum_probs=117.0
Q ss_pred cccccccccccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecc
Q psy12136 248 EEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNE 326 (399)
Q Consensus 248 ~~~~~~~~~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne 326 (399)
++.++.+....+|+|.+.+.. ....|+|+|.+|+||.+||.+|.+||||++.+.++.+. .++||++++.++||+|||
T Consensus 157 PslCG~DhtE~RGrl~l~~~~--~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNE 234 (683)
T KOG0696|consen 157 PSLCGTDHTERRGRLYLEAHI--KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNE 234 (683)
T ss_pred CcccCCcchhhcceEEEEEEe--cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccc
Confidence 455667778899999988876 56799999999999999999999999999999987765 899999999999999999
Q ss_pred eEEEEeccCcccccEEEEEEEeCCCCCCCeeeEEEEEccCCC-CCcchhhhhhhcC
Q psy12136 327 EFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK-GDRLRHWVDMMKY 381 (399)
Q Consensus 327 ~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~-~~~~~~w~~l~~~ 381 (399)
+|+|.+.+.+- ++.|.|+|||||+.++++++|...+++++. -.....||.+++.
T Consensus 235 tftf~Lkp~Dk-drRlsiEvWDWDrTsRNDFMGslSFgisEl~K~p~~GWyKlLsq 289 (683)
T KOG0696|consen 235 TFTFKLKPSDK-DRRLSIEVWDWDRTSRNDFMGSLSFGISELQKAPVDGWYKLLSQ 289 (683)
T ss_pred eeEEecccccc-cceeEEEEecccccccccccceecccHHHHhhcchhhHHHHhhh
Confidence 99999987654 589999999999999999999999999985 4678889999976
No 70
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.84 E-value=5e-20 Score=152.76 Aligned_cols=114 Identities=32% Similarity=0.468 Sum_probs=99.2
Q ss_pred cceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCC--CCceEecccccCCCCCeecceEEeceeC
Q psy12136 115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK--TSHRLRTKTCLRTINPEFHEKLTFYSVS 192 (399)
Q Consensus 115 ~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~~~rT~~~~~t~nP~wne~f~f~~v~ 192 (399)
.+|+|.++++|+...++|.|+|++|++|+..+..+.+||||+|++.+... ...++||++++++.||+|||+|.| .+.
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f-~i~ 79 (133)
T cd04009 1 PYGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEF-NVP 79 (133)
T ss_pred CceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEE-Eec
Confidence 37999999999999999999999999999998889999999999986442 346899999999999999999999 455
Q ss_pred cc--cCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCC
Q psy12136 193 ET--DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 229 (399)
Q Consensus 193 ~~--~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~ 229 (399)
.. .+....|.|+|||++..++ ++||++.++|+++..-
T Consensus 80 ~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 80 PEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred hhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCcc
Confidence 42 2345789999999999987 9999999999998743
No 71
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.83 E-value=1.9e-20 Score=155.66 Aligned_cols=121 Identities=27% Similarity=0.396 Sum_probs=105.3
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccC
Q psy12136 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL 196 (399)
Q Consensus 117 G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l 196 (399)
|+|+++++|++..++|.|.|++|+||+..+..+.+||||++++.+......+++|++++++.||+|||+|.| .++...+
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f-~i~~~~l 79 (134)
T cd00276 1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSF-DVPAEQL 79 (134)
T ss_pred CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEE-ECCHHHh
Confidence 899999999999999999999999999998888999999999987554445789999999999999999999 5777766
Q ss_pred CCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136 197 SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK 240 (399)
Q Consensus 197 ~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~ 240 (399)
....|.|+|||++..+. ++||++.+++++ .+...+.|+.|..
T Consensus 80 ~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 122 (134)
T cd00276 80 EEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLA 122 (134)
T ss_pred CCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence 66889999999998777 999999999999 4445566666653
No 72
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.83 E-value=5.9e-20 Score=151.14 Aligned_cols=121 Identities=29% Similarity=0.371 Sum_probs=99.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeC-cccCCCceEEEEEEEcC
Q psy12136 131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS-ETDLSLQSLHILVLDDD 209 (399)
Q Consensus 131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~-~~~l~~~~L~~~V~d~~ 209 (399)
+|+|+|++|++|++.+..+.+||||+|++. .+++||++++++.||+|||.|.|. +. ...+....|.|+|||++
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~-----~~~~rT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d~~ 74 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD-----GQKKRTRTKPKDLNPVWNEKLVFN-VSDPSRLSNLVLEVYVYNDR 74 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC-----CEEecceeEcCCCCCccceEEEEE-ccCHHHccCCeEEEEEeeCC
Confidence 489999999999999988999999999995 367899999999999999999994 54 34444578999999999
Q ss_pred CCC-C-cceeeEEecCcccC-CCcceeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136 210 KYG-H-DFLGEARFPLNRLR-PHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 268 (399)
Q Consensus 210 ~~~-~-~~lG~~~i~l~~l~-~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~ 268 (399)
..+ . ++||++.+++.++. .+.....|++|++... ....+|+|.+++.+
T Consensus 75 ~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~-----------~~~~~G~l~l~~~~ 125 (127)
T cd04022 75 RSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGL-----------FSRVRGEIGLKVYI 125 (127)
T ss_pred CCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCC-----------CCCccEEEEEEEEE
Confidence 885 5 99999999999987 4556678888875211 12368999998865
No 73
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.83 E-value=1e-19 Score=148.45 Aligned_cols=120 Identities=29% Similarity=0.413 Sum_probs=102.5
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCC
Q psy12136 131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK 210 (399)
Q Consensus 131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~ 210 (399)
+|+|+|++|++|+..+..+.+||||++.+. ....++|++++++.||+|||.|.| .+.. + ...|.|+|||++.
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~----~~~~~kT~~~~~t~nP~Wne~f~f-~v~~--~-~~~l~~~v~D~d~ 72 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYG----GKTVYKSKTIYKNLNPVWDEKFTL-PIED--V-TQPLYIKVFDYDR 72 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEEC----CEEEEEeeeccCCCCCccceeEEE-EecC--C-CCeEEEEEEeCCC
Confidence 589999999999999988999999999985 236789999999999999999999 4543 2 4689999999999
Q ss_pred CCC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136 211 YGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 270 (399)
Q Consensus 211 ~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~ 270 (399)
.++ ++||++.++++++..+.....|++|.+.. .....|+|.+.++|.|
T Consensus 73 ~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~------------~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 73 GLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPN------------SDEDLGYISLVVTLTP 121 (121)
T ss_pred CCCCcceEEEEEEHHHcCCCCCeEEEEECCCCC------------CccCceEEEEEEEECC
Confidence 977 99999999999999888888999986411 0257899999998865
No 74
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.82 E-value=1.2e-19 Score=149.07 Aligned_cols=107 Identities=24% Similarity=0.345 Sum_probs=89.0
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEecc---CcccccEEEEEEEeCCC
Q psy12136 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI---TELSKQTLVITVWDKDY 351 (399)
Q Consensus 275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~---~~l~~~~l~i~V~d~~~ 351 (399)
+.|+|++|+||+.++..|.+||||+|.+. ..+++|++++++.||+|||+|.|.+.. .++....|.|.|||++.
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~----~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~ 76 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLG----KEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL 76 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEEC----CeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc
Confidence 47999999999999889999999999994 367899999999999999999999974 22456789999999998
Q ss_pred CCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136 352 GKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 395 (399)
Q Consensus 352 ~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~ 395 (399)
++++++||++.|++++. ...++.....||+|.+.
T Consensus 77 ~~~d~~iG~~~i~l~~l----------~~~~~~~~~~W~~L~~~ 110 (126)
T cd08682 77 LGLDKFLGQVSIPLNDL----------DEDKGRRRTRWFKLESK 110 (126)
T ss_pred cCCCceeEEEEEEHHHh----------hccCCCcccEEEECcCC
Confidence 88899999999998652 22234456677777653
No 75
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.81 E-value=3.5e-19 Score=144.95 Aligned_cols=118 Identities=24% Similarity=0.377 Sum_probs=97.3
Q ss_pred EEEEEEEecCCCCCC-CCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCC
Q psy12136 132 LHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK 210 (399)
Q Consensus 132 L~V~V~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~ 210 (399)
|.|+|++|+||++.+ ..|.+||||+|.+. ....++|++++++.||+|||+|.| .++.. ...|.|.|||++.
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~----~~~~~kT~v~~kt~~P~WnE~F~f-~v~~~---~~~l~~~v~d~~~ 73 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD----QEEVFRTKTVEKSLCPFFGEDFYF-EIPRT---FRHLSFYIYDRDV 73 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEEC----CccEEEeeEEECCCCCccCCeEEE-EcCCC---CCEEEEEEEECCC
Confidence 789999999999874 45789999999994 234689999999999999999999 56643 3689999999999
Q ss_pred CCC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136 211 YGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 268 (399)
Q Consensus 211 ~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~ 268 (399)
.++ ++||++.++++++..+...+.|++|+... ......|+|++++++
T Consensus 74 ~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~-----------~~~~~~G~i~l~~~~ 121 (121)
T cd08401 74 LRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPVD-----------ADSEVQGKVHLELRL 121 (121)
T ss_pred CCCCceEEEEEEEHHHccCCCCcEeeEEEEccC-----------CCCcccEEEEEEEEC
Confidence 987 99999999999998877778899997421 012358999998864
No 76
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.81 E-value=2.1e-19 Score=150.60 Aligned_cols=94 Identities=29% Similarity=0.465 Sum_probs=81.3
Q ss_pred eEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEec-------------cCcccc
Q psy12136 274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETK-------------ITELSK 339 (399)
Q Consensus 274 ~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~-------------~~~l~~ 339 (399)
+|.|+|++|+||+. .+|.+||||+|++.+...+ .+++|++++++.||+|||+|.|.+. ..++..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 48999999999987 6788999999999875444 6889999999999999999999984 234455
Q ss_pred cEEEEEEEeCCCCCCCeeeEEEEEccCCCC
Q psy12136 340 QTLVITVWDKDYGKSNDYLGCLELCCNSKG 369 (399)
Q Consensus 340 ~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~ 369 (399)
..|.|.|||++.++++++||++.|++....
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~ 108 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLD 108 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEeccccc
Confidence 689999999998889999999999998754
No 77
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.81 E-value=3.4e-19 Score=147.76 Aligned_cols=110 Identities=35% Similarity=0.475 Sum_probs=97.8
Q ss_pred ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCC---CceEeecceeCCCCceecceEEEEeccC
Q psy12136 259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH---KRKYKTGVKWKTLNPIFNEEFAIETKIT 335 (399)
Q Consensus 259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~---~~~~kT~v~~~t~nP~wne~f~f~v~~~ 335 (399)
.|+|.+++.|.+....|.|+|++|++|+..+..+.+||||+|++.+... ..+++|++++++.||+|||+|.|.+...
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 81 (133)
T cd04009 2 YGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPE 81 (133)
T ss_pred ceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechh
Confidence 6999999999999999999999999999998889999999999975442 3689999999999999999999998743
Q ss_pred c--ccccEEEEEEEeCCCCCCCeeeEEEEEccCCC
Q psy12136 336 E--LSKQTLVITVWDKDYGKSNDYLGCLELCCNSK 368 (399)
Q Consensus 336 ~--l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~ 368 (399)
+ +....|.|+|||++.++++++||++.|++++.
T Consensus 82 ~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l 116 (133)
T cd04009 82 QCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDI 116 (133)
T ss_pred hcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHC
Confidence 2 34578999999999998899999999998763
No 78
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.81 E-value=4e-19 Score=145.38 Aligned_cols=117 Identities=32% Similarity=0.451 Sum_probs=100.8
Q ss_pred ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEE-eccCc
Q psy12136 259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIE-TKITE 336 (399)
Q Consensus 259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~-v~~~~ 336 (399)
.|+|.+++.|.+..+.|.|+|++|++|+..+..+.+||||++.+.+.... .+++|++++++.||.|||.|.|. +...+
T Consensus 1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~ 80 (123)
T cd04035 1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEED 80 (123)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHH
Confidence 48999999999999999999999999998888889999999999765433 78999999999999999999996 44345
Q ss_pred ccccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhh
Q psy12136 337 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWV 376 (399)
Q Consensus 337 l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~ 376 (399)
+....|.|+|||++.+ ++++||++.+++++...+..+|+
T Consensus 81 ~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~ 119 (123)
T cd04035 81 IQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQF 119 (123)
T ss_pred hCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCcceEe
Confidence 5567899999999988 79999999999998665555544
No 79
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.81 E-value=5.8e-19 Score=143.55 Aligned_cols=116 Identities=24% Similarity=0.356 Sum_probs=98.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 211 (399)
Q Consensus 132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~ 211 (399)
|.|+|++|++|+..+..+.+||||++++.+.. ..++||++++++.||+|||+|.| .+... ....|+|+|||++..
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~--~~~~kT~vv~~t~nP~Wne~f~f-~i~~~--~~~~l~v~v~d~d~~ 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTAS--DEKKRTKTIKNSINPVWNETFEF-RIQSQ--VKNVLELTVMDEDYV 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCC--CccCccceecCCCCCccceEEEE-EeCcc--cCCEEEEEEEECCCC
Confidence 78999999999999888899999999985432 36789999999999999999999 46543 246799999999998
Q ss_pred CCcceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136 212 GHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 268 (399)
Q Consensus 212 ~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~ 268 (399)
++++||++.+++.++..+.....|++|.+ ...|+|++.+.+
T Consensus 77 ~~~~iG~~~~~l~~l~~g~~~~~~~~L~~----------------~~~g~l~~~~~~ 117 (119)
T cd04036 77 MDDHLGTVLFDVSKLKLGEKVRVTFSLNP----------------QGKEELEVEFLL 117 (119)
T ss_pred CCcccEEEEEEHHHCCCCCcEEEEEECCC----------------CCCceEEEEEEe
Confidence 34999999999999998888889999864 347888887754
No 80
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.81 E-value=4.7e-19 Score=143.87 Aligned_cols=117 Identities=27% Similarity=0.411 Sum_probs=96.8
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEeccccc-CCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136 130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL-RTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 208 (399)
Q Consensus 130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~-~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~ 208 (399)
+.|+|+|++|++|+..+..+.+||||+|.+. ..+++|+++. ++.||+|||.|.| .+... ....|.|+|||+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~-----~~~~kT~~~~~~~~nP~Wne~f~f-~v~~~--~~~~l~i~v~d~ 72 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG-----GVTKKTKTDFRGGQHPEWDEELRF-EITED--KKPILKVAVFDD 72 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEEC-----CCccccccccCCCCCCccCceEEE-EecCC--CCCEEEEEEEeC
Confidence 5799999999999999988999999999995 3677888875 4799999999999 46653 247899999999
Q ss_pred CCCCCcceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136 209 DKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 268 (399)
Q Consensus 209 ~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~ 268 (399)
+..++++||++.+++.++..+.....|++|... ....|+|+++++|
T Consensus 73 ~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~~--------------~~~~G~i~l~l~f 118 (118)
T cd08681 73 DKRKPDLIGDTEVDLSPALKEGEFDDWYELTLK--------------GRYAGEVYLELTF 118 (118)
T ss_pred CCCCCcceEEEEEecHHHhhcCCCCCcEEeccC--------------CcEeeEEEEEEEC
Confidence 887679999999999998766666677777531 2468999999876
No 81
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.80 E-value=6.6e-19 Score=144.08 Aligned_cols=121 Identities=26% Similarity=0.359 Sum_probs=98.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCC
Q psy12136 131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK 210 (399)
Q Consensus 131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~ 210 (399)
+|+|+|++|++|...+..+.+||||+|++. ..+.+|++++++.||+|||+|.| .+.... ...|.|+|||++.
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f-~~~~~~--~~~l~~~v~d~~~ 72 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN-----GQTLETSVVKKSCYPRWNEVFEF-ELMEGA--DSPLSVEVWDWDL 72 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEEC-----CEEEeceeecCCCCCccCcEEEE-EcCCCC--CCEEEEEEEECCC
Confidence 589999999999999988899999999984 46789999999999999999999 354332 4789999999999
Q ss_pred CCC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEE
Q psy12136 211 YGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTL 266 (399)
Q Consensus 211 ~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l 266 (399)
.++ ++||++.++|+++........|+.|...... ........|.|++.+
T Consensus 73 ~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~-------~~~~~~~~G~l~~~~ 122 (123)
T cd04025 73 VSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRA-------EEESGGNLGSLRLKV 122 (123)
T ss_pred CCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCC-------CccccCceEEEEEEe
Confidence 887 9999999999999876666778888643211 122346788888875
No 82
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.80 E-value=7.8e-19 Score=142.12 Aligned_cols=113 Identities=29% Similarity=0.518 Sum_probs=98.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 211 (399)
Q Consensus 132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~ 211 (399)
|+|+|++|++|+..+..+.+||||++++. ..+++|++++++.||.|||.|.| .+... ....|.|+|||++..
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f-~~~~~--~~~~l~v~v~d~~~~ 73 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLG-----NEKYKSKVCSKTLNPQWLEQFDL-HLFDD--QSQILEIEVWDKDTG 73 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEEC-----CEeEecccccCCCCCceeEEEEE-EecCC--CCCEEEEEEEECCCC
Confidence 78999999999999988999999999994 46789999999999999999999 45432 257899999999998
Q ss_pred CC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeee
Q psy12136 212 GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS 269 (399)
Q Consensus 212 ~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~ 269 (399)
++ ++||++.++|.++..+..+..|++|.+ ..|+|++.+.|.
T Consensus 74 ~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-----------------~~G~~~~~~~~~ 115 (116)
T cd08376 74 KKDEFIGRCEIDLSALPREQTHSLELELED-----------------GEGSLLLLLTLT 115 (116)
T ss_pred CCCCeEEEEEEeHHHCCCCCceEEEEEccC-----------------CCcEEEEEEEec
Confidence 77 999999999999998888899999963 258898887663
No 83
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.80 E-value=8.4e-19 Score=145.11 Aligned_cols=120 Identities=34% Similarity=0.480 Sum_probs=102.7
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCccc
Q psy12136 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 195 (399)
Q Consensus 116 ~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~ 195 (399)
+|+|++++.|+. +.|+|+|++|++|+..+..+.+||||+|.+.+.......++|++++++.||.|||+|.|. +...+
T Consensus 1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~-~~~~~ 77 (131)
T cd04026 1 RGRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFD-LKPAD 77 (131)
T ss_pred CcEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEe-CCchh
Confidence 599999999976 899999999999999988889999999999865444578999999999999999999994 55433
Q ss_pred CCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136 196 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK 240 (399)
Q Consensus 196 l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~ 240 (399)
. ...|.|.|||++..++ ++||++.++|.++... ....|++|.+
T Consensus 78 ~-~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 78 K-DRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred c-CCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 2 4689999999998877 9999999999999754 5667777764
No 84
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.80 E-value=1e-18 Score=142.28 Aligned_cols=100 Identities=27% Similarity=0.406 Sum_probs=87.8
Q ss_pred EEEEEEEecC---CCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136 132 LHVTLHRAKG---LRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 208 (399)
Q Consensus 132 L~V~V~~a~~---L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~ 208 (399)
|.|+|++|++ |..++..|.+||||+|.+. .++.||++++++.||+|||+|.|. +... ...|.|+|||+
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g-----~~~~rTk~~~~~~nP~WnE~f~f~-v~~~---~~~l~v~V~d~ 72 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG-----PKWVRTRTVEDSSNPRWNEQYTWP-VYDP---CTVLTVGVFDN 72 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEEC-----CEEeEcCcccCCCCCcceeEEEEE-ecCC---CCEEEEEEEEC
Confidence 8999999999 8889999999999999994 478899999999999999999994 5432 25899999999
Q ss_pred CCC-------CCcceeeEEecCcccCCCcceeEEEeecc
Q psy12136 209 DKY-------GHDFLGEARFPLNRLRPHISRDLCLNLCK 240 (399)
Q Consensus 209 ~~~-------~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 240 (399)
+.. ++++||++.++|..+..+.....|++|..
T Consensus 73 d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~ 111 (126)
T cd08379 73 SQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLS 111 (126)
T ss_pred CCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence 887 34999999999999998888888999874
No 85
>KOG0696|consensus
Probab=99.80 E-value=6.3e-20 Score=170.51 Aligned_cols=114 Identities=34% Similarity=0.503 Sum_probs=104.3
Q ss_pred CCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEecee
Q psy12136 112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191 (399)
Q Consensus 112 ~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v 191 (399)
..+.+|+|.+.++. ....|.|.|.+|+||.++|.+|.+||||++.|.|+.+...+++|++++.++||+|||+|.| .+
T Consensus 164 htE~RGrl~l~~~~--~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf-~L 240 (683)
T KOG0696|consen 164 HTERRGRLYLEAHI--KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTF-KL 240 (683)
T ss_pred chhhcceEEEEEEe--cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEE-ec
Confidence 45789999998887 7889999999999999999999999999999999888888999999999999999999999 56
Q ss_pred CcccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCC
Q psy12136 192 SETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 229 (399)
Q Consensus 192 ~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~ 229 (399)
.+.+- ...|.|+|||||+.++ +|+|..++.+++|...
T Consensus 241 kp~Dk-drRlsiEvWDWDrTsRNDFMGslSFgisEl~K~ 278 (683)
T KOG0696|consen 241 KPSDK-DRRLSIEVWDWDRTSRNDFMGSLSFGISELQKA 278 (683)
T ss_pred ccccc-cceeEEEEecccccccccccceecccHHHHhhc
Confidence 66655 5789999999999999 9999999999998754
No 86
>KOG1028|consensus
Probab=99.79 E-value=5.8e-19 Score=172.29 Aligned_cols=156 Identities=25% Similarity=0.343 Sum_probs=124.5
Q ss_pred ccccCCCccccccCCCcccCCCCCCCCCCCcccCCCCccccCCcccccCCcccccccccccCCCCCcceEEEEEEEEeCC
Q psy12136 49 ATVRSSPLMSRHTLPLTVNENSISPVSPLSPICNGNFNTQQESSGTLKRGVITEEKEYFVTSQADTNLGSIELTVTYDST 128 (399)
Q Consensus 49 ~~~~~~~~~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~G~i~~~l~y~~~ 128 (399)
.+|.++|+++|++.+|.+... +.. +..... ...+.+..+.........|+|.++++|.+.
T Consensus 237 l~V~~~drfsr~~~iGev~~~-l~~------~~~~~~-------------~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~ 296 (421)
T KOG1028|consen 237 LSVYDFDRFSRHDFIGEVILP-LGE------VDLLST-------------TLFWKDLQPSSTDSEELAGELLLSLCYLPT 296 (421)
T ss_pred EEEEecCCcccccEEEEEEec-Ccc------cccccc-------------ceeeeccccccCCcccccceEEEEEEeecC
Confidence 678999999999999965322 111 111110 011111222212222233899999999999
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136 129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 208 (399)
Q Consensus 129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~ 208 (399)
.++|.|.|++|+||..++..+..||||++++.++.....+++|.+++++.||+|||+|.| .|+.+.+....|.|+|||+
T Consensus 297 ~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F-~vp~~~l~~~~l~l~V~d~ 375 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVF-DVPPEQLAEVSLELTVWDH 375 (421)
T ss_pred CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEE-eCCHHHhheeEEEEEEEEc
Confidence 999999999999999999999999999999998777778999999999999999999999 8999999889999999999
Q ss_pred CCCCC-cceeeEEecCcc
Q psy12136 209 DKYGH-DFLGEARFPLNR 225 (399)
Q Consensus 209 ~~~~~-~~lG~~~i~l~~ 225 (399)
+..+. ++||.+.+....
T Consensus 376 d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 376 DTLGSNDLIGRCILGSDS 393 (421)
T ss_pred ccccccceeeEEEecCCC
Confidence 99999 999998888775
No 87
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.79 E-value=1.6e-18 Score=146.14 Aligned_cols=130 Identities=25% Similarity=0.258 Sum_probs=100.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccC-CCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136 131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR-TINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 209 (399)
Q Consensus 131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~-t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~ 209 (399)
.|.|+|++|++|++.+..|.+||||+|.+. .++++|+++.+ +.||+|||.|.| .+.. .....|.|.|||++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~-----~~~~kTk~~~~~t~nP~WNE~F~f-~v~~--~~~~~l~v~V~d~~ 72 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLG-----NQVLRTRPSQTRNGNPSWNEELMF-VAAE--PFEDHLILSVEDRV 72 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEEC-----CEEeeeEeccCCCCCCcccCcEEE-EecC--ccCCeEEEEEEEec
Confidence 389999999999999999999999999995 37889998876 699999999999 4543 22468999999999
Q ss_pred CCCC-cceeeEEecCcccCCC----cceeEEEeecccCCCCCccccccccccccceeEEEEEeeeccce
Q psy12136 210 KYGH-DFLGEARFPLNRLRPH----ISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKR 273 (399)
Q Consensus 210 ~~~~-~~lG~~~i~l~~l~~~----~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~~ 273 (399)
..++ ++||++.++|.++..+ .....|++|.+..... .+.......|+|+|.++|.+...
T Consensus 73 ~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~-----~~~k~~k~~g~l~l~i~~~~~~~ 136 (150)
T cd04019 73 GPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAM-----EQKKKRKFASRIHLRLCLDGGYH 136 (150)
T ss_pred CCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcc-----cccccCcccccEEEEEEecCcce
Confidence 8866 9999999999998643 3356778876532110 01122356899999999986543
No 88
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.79 E-value=2.2e-18 Score=141.37 Aligned_cols=121 Identities=21% Similarity=0.288 Sum_probs=96.5
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136 130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 209 (399)
Q Consensus 130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~ 209 (399)
..|+|+|++|+||++. +.+||||+|.+.. .+..||+++ ++.||.|||.|.|. +...++ ..|.|.|||++
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~----~~~~kT~v~-~~~nP~WnE~f~f~-~~~~~~--~~l~v~v~d~~ 72 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNE----VKVARTKVR-EGPNPVWSEEFVFD-DLPPDV--NSFTISLSNKA 72 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECC----EeEEEeecC-CCCCCccCCEEEEe-cCCCCc--CEEEEEEEECC
Confidence 4699999999999875 4689999999942 345788875 68999999999994 433332 46889999999
Q ss_pred CCCC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeecc
Q psy12136 210 KYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTK 271 (399)
Q Consensus 210 ~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~~ 271 (399)
..++ ++||++.++|..+..+.....|+.|.+... ......|+|+++++|.+.
T Consensus 73 ~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~----------~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 73 KRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASP----------LKGGEWGSLRIRARYSHE 125 (126)
T ss_pred CCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCC----------CCCCcCcEEEEEEEEEcc
Confidence 9887 999999999999988877788888865211 123578999999999763
No 89
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.79 E-value=1.8e-18 Score=143.53 Aligned_cols=117 Identities=26% Similarity=0.435 Sum_probs=95.0
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136 129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 208 (399)
Q Consensus 129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~ 208 (399)
-+.|+|+|++|++|+..+..+.+||||++++. ...+||++++++.||.|||+|.| .+.. .....|.|+|||+
T Consensus 14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~-----~~~~kT~vi~~t~nP~Wne~f~f-~v~~--~~~~~l~i~V~D~ 85 (136)
T cd08375 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG-----SQEHKTKVVSDTLNPKWNSSMQF-FVKD--LEQDVLCITVFDR 85 (136)
T ss_pred cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC-----CEeeeccccCCCCCCccCceEEE-EecC--ccCCEEEEEEEEC
Confidence 46899999999999999988999999999994 46899999999999999999999 4543 3357899999999
Q ss_pred CCCCC-cceeeEEecCcccCCC-----cceeEEEeecccCCCCCccccccccccccceeEEEEEeee
Q psy12136 209 DKYGH-DFLGEARFPLNRLRPH-----ISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS 269 (399)
Q Consensus 209 ~~~~~-~~lG~~~i~l~~l~~~-----~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~ 269 (399)
+..++ ++||++.++|.++... ...+.|+.+. ....|+|++.+.++
T Consensus 86 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~----------------~~~~g~i~l~~~~~ 136 (136)
T cd08375 86 DFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH----------------EVPTGEVVVKLDLQ 136 (136)
T ss_pred CCCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccc----------------cccceeEEEEEEeC
Confidence 99887 9999999999998752 1222333331 25689999988763
No 90
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.78 E-value=3e-18 Score=140.72 Aligned_cols=122 Identities=28% Similarity=0.381 Sum_probs=100.1
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 211 (399)
Q Consensus 132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~ 211 (399)
|.|+|++|+||+. ..+.+||||++++.. ...++||++++++.||+|||.|.| .+... ...|.|+|||++..
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~Wne~f~f-~~~~~---~~~l~~~v~d~~~~ 71 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE---PPQKYQSSTQKNTSNPFWDEHFLF-ELSPN---SKELLFEVYDNGKK 71 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECC---CCcEEEeEEEecCCCCccCceEEE-EeCCC---CCEEEEEEEECCCC
Confidence 6799999999998 678899999999842 135789999999999999999999 46533 46799999999998
Q ss_pred CC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeeccc
Q psy12136 212 GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKK 272 (399)
Q Consensus 212 ~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~ 272 (399)
++ ++||++.+++.++........|++|..... ......|+|.+.+.|.+..
T Consensus 72 ~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~----------~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 72 SDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPY----------EGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred CCCceEEEEEEeHHHhccCCceeEEEEecCCCC----------CCCCcceEEEEEEEEeccc
Confidence 87 999999999999998777778888864210 1135799999999987653
No 91
>KOG1328|consensus
Probab=99.78 E-value=5.2e-20 Score=179.68 Aligned_cols=96 Identities=38% Similarity=0.580 Sum_probs=85.6
Q ss_pred ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC---ceEeecceeCCCCceecceEEEEeccCccc--ccEEEEEE
Q psy12136 272 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK---RKYKTGVKWKTLNPIFNEEFAIETKITELS--KQTLVITV 346 (399)
Q Consensus 272 ~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~---~~~kT~v~~~t~nP~wne~f~f~v~~~~l~--~~~l~i~V 346 (399)
..+|.|.|+.|+++.+.|.+|.+||||.|++++...- ...+|+|+++|+||+|+|+|+|.|+++... ...|.|+|
T Consensus 946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTV 1025 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTV 1025 (1103)
T ss_pred ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEe
Confidence 4668899999999999999999999999999875432 578999999999999999999999976554 46899999
Q ss_pred EeCCCCCCCeeeEEEEEccCC
Q psy12136 347 WDKDYGKSNDYLGCLELCCNS 367 (399)
Q Consensus 347 ~d~~~~~~d~~lG~~~i~l~~ 367 (399)
+|+|-.+.|+|-|++.+.|+.
T Consensus 1026 MDHD~L~sNDFaGEA~L~Lg~ 1046 (1103)
T KOG1328|consen 1026 MDHDYLRSNDFAGEAFLELGD 1046 (1103)
T ss_pred eccceecccccchHHHHhhCC
Confidence 999999999999999999885
No 92
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.78 E-value=2e-18 Score=142.89 Aligned_cols=107 Identities=40% Similarity=0.692 Sum_probs=94.2
Q ss_pred ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcc
Q psy12136 259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 337 (399)
Q Consensus 259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l 337 (399)
+|+|++++.|.+ +.|.|+|++|++|+..+..+.+||||+|.+.+.... .+++|++++++.||.|||+|.|.+...+
T Consensus 1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~- 77 (131)
T cd04026 1 RGRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD- 77 (131)
T ss_pred CcEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchh-
Confidence 589999999988 889999999999999888889999999999754433 7899999999999999999999987543
Q ss_pred cccEEEEEEEeCCCCCCCeeeEEEEEccCCC
Q psy12136 338 SKQTLVITVWDKDYGKSNDYLGCLELCCNSK 368 (399)
Q Consensus 338 ~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~ 368 (399)
....|.|+|||++..+++++||++.+++.+.
T Consensus 78 ~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l 108 (131)
T cd04026 78 KDRRLSIEVWDWDRTTRNDFMGSLSFGVSEL 108 (131)
T ss_pred cCCEEEEEEEECCCCCCcceeEEEEEeHHHh
Confidence 2468999999999888899999999998764
No 93
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.78 E-value=1.1e-17 Score=172.21 Aligned_cols=239 Identities=29% Similarity=0.375 Sum_probs=173.6
Q ss_pred EeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEE
Q psy12136 125 YDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHIL 204 (399)
Q Consensus 125 y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~ 204 (399)
|+...+.++|.|..|.+|......+.+|||++|.+. +..++||-....++||+||+....+.+++ ...|.+.
T Consensus 706 ~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n----~~~k~rti~~~~~~npiw~~i~Yv~v~sk----~~r~~l~ 777 (1227)
T COG5038 706 YDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVN----NLVKYRTIYGSSTLNPIWNEILYVPVTSK----NQRLTLE 777 (1227)
T ss_pred ecCccceEEEEeehhhcccccccCcccccceEEEec----ceeEEEEecccCccccceeeeEEEEecCC----ccEEeee
Confidence 344458899999999999987778999999999996 35788998888999999999876643322 3568889
Q ss_pred EEEcCCCCC-cceeeEEecCcccCCCcc---------------------------eeEEEeecccC---CC---C-----
Q psy12136 205 VLDDDKYGH-DFLGEARFPLNRLRPHIS---------------------------RDLCLNLCKHY---PV---P----- 245 (399)
Q Consensus 205 V~d~~~~~~-~~lG~~~i~l~~l~~~~~---------------------------~~~~~~L~~~~---~~---~----- 245 (399)
++|+...++ ..||++.++++++..... .++.+.+.+.. .+ .
T Consensus 778 ~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~ 857 (1227)
T COG5038 778 CMDYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKV 857 (1227)
T ss_pred eecchhccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhh
Confidence 999999888 999999999988754100 01111111100 00 0
Q ss_pred --------------Cccccccc----------------------------------------------------------
Q psy12136 246 --------------REEEVWGE---------------------------------------------------------- 253 (399)
Q Consensus 246 --------------~~~~~~~~---------------------------------------------------------- 253 (399)
.+...+..
T Consensus 858 ~~e~~~~~~~~~~l~ek~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f~ 937 (1227)
T COG5038 858 SSEKRKSEKRKSALDEKTISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIFF 937 (1227)
T ss_pred hhHHHHhhhhhcccCccccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEEe
Confidence 00000000
Q ss_pred -----------------------------------------c------------------------------ccccceeE
Q psy12136 254 -----------------------------------------E------------------------------ECWQHGKI 262 (399)
Q Consensus 254 -----------------------------------------~------------------------------~~~~~G~l 262 (399)
+ .......+
T Consensus 938 Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~~ 1017 (1227)
T COG5038 938 DDASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAKV 1017 (1227)
T ss_pred cCCCCceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCceE
Confidence 0 00001233
Q ss_pred EEEEeeecc------------ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEE
Q psy12136 263 FLTLCFSTK------------KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAI 330 (399)
Q Consensus 263 ~l~l~~~~~------------~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f 330 (399)
.+++.|.|. +|.|.|.+..|.||+..+.+|.+||||++.+.+ ++.++|+++++++||+|||.|..
T Consensus 1018 ~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~---k~vyktkv~KktlNPvwNEe~~i 1094 (1227)
T COG5038 1018 LVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNE---KSVYKTKVVKKTLNPVWNEEFTI 1094 (1227)
T ss_pred EEEEEEeecccccCcceeecccCcEEEEEeccCCCcccccCCCCCceEEEEecc---eecccccchhccCCCCccccceE
Confidence 444444442 799999999999999999999999999999953 36899999999999999999999
Q ss_pred EeccCcccccEEEEEEEeCCCCCCCeeeEEEEEccCCCC-Ccchhhh
Q psy12136 331 ETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG-DRLRHWV 376 (399)
Q Consensus 331 ~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~-~~~~~w~ 376 (399)
+|... ....+.|.|+||+...+++.||.+.|+|.... .....|.
T Consensus 1095 ~v~~r--~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~ 1139 (1227)
T COG5038 1095 EVLNR--VKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSN 1139 (1227)
T ss_pred eeecc--ccceEEEEEeecccCCCccccccccccHhhcCcCCcccee
Confidence 98743 35689999999999999999999999998754 3344443
No 94
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.78 E-value=2.9e-18 Score=139.54 Aligned_cols=113 Identities=29% Similarity=0.413 Sum_probs=91.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 211 (399)
Q Consensus 132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~ 211 (399)
|.|+|++|+||+.. .+||||+|++. ..+.||++++++.||+|||+|.|. +. .+....|.|+|||++..
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~-----~~~~kT~v~~~t~nP~Wne~F~f~-~~--~~~~~~L~~~v~d~d~~ 69 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLG-----NYKGSTKAIERTSNPEWNQVFAFS-KD--RLQGSTLEVSVWDKDKA 69 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEEC-----CccccccccCCCCCCccceEEEEE-cC--CCcCCEEEEEEEeCCCC
Confidence 89999999999988 68999999995 367899999999999999999994 33 33457899999999987
Q ss_pred CCcceeeEEecCcccCCCc-----ceeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136 212 GHDFLGEARFPLNRLRPHI-----SRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 268 (399)
Q Consensus 212 ~~~~lG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~ 268 (399)
++++||++.++|+++.... ....|++|.... .....|+|++++.|
T Consensus 70 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~------------~~~~~G~i~l~~~~ 119 (121)
T cd08378 70 KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKK------------GGRVGGELMLAVWF 119 (121)
T ss_pred cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCC------------CCccceEEEEEEEe
Confidence 5599999999999987532 234677775421 12578999999876
No 95
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.78 E-value=3.2e-18 Score=138.44 Aligned_cols=100 Identities=13% Similarity=0.283 Sum_probs=82.8
Q ss_pred eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeC-CCCceecceEEEEeccCcccccEEEEEEEeCCC
Q psy12136 273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWK-TLNPIFNEEFAIETKITELSKQTLVITVWDKDY 351 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~ 351 (399)
|.|.|+|++|++++..+ .|.+||||++.++ ..+++|+++.+ +.||+|||+|.|.+... ...|.|+|||++.
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg----~~~~kT~v~~~~~~nP~WNe~F~f~v~~~---~~~l~~~V~d~d~ 73 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVG----HAVYETPTAYNGAKNPRWNKTIQCTLPEG---VDSIYIEIFDERA 73 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEEC----CEEEEeEEccCCCCCCccCeEEEEEecCC---CcEEEEEEEeCCC
Confidence 68999999999987766 7899999999994 36789999865 79999999999999642 3579999999999
Q ss_pred CCCCeeeEEEEEccCC---CCCcchhhhhhhc
Q psy12136 352 GKSNDYLGCLELCCNS---KGDRLRHWVDMMK 380 (399)
Q Consensus 352 ~~~d~~lG~~~i~l~~---~~~~~~~w~~l~~ 380 (399)
+++|++||.+.|++.. .+...+.|++|..
T Consensus 74 ~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~ 105 (121)
T cd04016 74 FTMDERIAWTHITIPESVFNGETLDDWYSLSG 105 (121)
T ss_pred CcCCceEEEEEEECchhccCCCCccccEeCcC
Confidence 9999999999999953 2344566665543
No 96
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.78 E-value=4.6e-18 Score=144.73 Aligned_cols=122 Identities=25% Similarity=0.331 Sum_probs=98.9
Q ss_pred CCEEEEEEEEecCCCCCC------------------------------CCCCCCcEEEEEEecCCCCCceEecccccCCC
Q psy12136 129 TCSLHVTLHRAKGLRAMD------------------------------IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTI 178 (399)
Q Consensus 129 ~~~L~V~V~~a~~L~~~~------------------------------~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~ 178 (399)
++.|.|+|++|++|+.+| ..|.+||||+|.+.. ....||++++++.
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~----~~~~rT~v~~~~~ 81 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG----ARVARTRVIENSE 81 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC----eEeeEEEEeCCCC
Confidence 478999999999999987 246789999999952 2457999999999
Q ss_pred CCeecceEEeceeCcccCCCceEEEEEEEcCCCCCcceeeEEecCcccCCCcceeEEEeecccCCCCCcccccccccccc
Q psy12136 179 NPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQ 258 (399)
Q Consensus 179 nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~ 258 (399)
||+|||+|.|. +... ...|.|.|||++..+.++||++.++++++..+.....|++|...... ....
T Consensus 82 nP~WnE~F~~~-~~~~---~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~----------~~~~ 147 (158)
T cd04015 82 NPVWNESFHIY-CAHY---ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGK----------PPKP 147 (158)
T ss_pred CCccceEEEEE-ccCC---CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCC----------CCCC
Confidence 99999999993 4432 35799999999988779999999999999888778889988652111 1245
Q ss_pred ceeEEEEEee
Q psy12136 259 HGKIFLTLCF 268 (399)
Q Consensus 259 ~G~l~l~l~~ 268 (399)
.|+|++++.|
T Consensus 148 ~~~l~v~~~f 157 (158)
T cd04015 148 GAKIRVSLQF 157 (158)
T ss_pred CCEEEEEEEE
Confidence 6899999887
No 97
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.77 E-value=9.5e-19 Score=140.15 Aligned_cols=107 Identities=28% Similarity=0.358 Sum_probs=89.3
Q ss_pred EEEEEEeeecCCCCCC-CCCCCcEEEEEEecCCCCceEeecceeCCCCcee-cceEEEEeccCcccccEEEEEEEeCCCC
Q psy12136 275 LIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIF-NEEFAIETKITELSKQTLVITVWDKDYG 352 (399)
Q Consensus 275 L~v~v~~a~~L~~~~~-~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~w-ne~f~f~v~~~~l~~~~l~i~V~d~~~~ 352 (399)
|.|+|++|++|+.++. .+.+||||++++++ .+++|++++++.||.| ||+|.|.+...++....|.|+|||++.+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~----~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~ 76 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS----TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTY 76 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC----eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCC
Confidence 6799999999998884 78899999999953 7899999999999999 9999999987666667999999999999
Q ss_pred CCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCC
Q psy12136 353 KSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 394 (399)
Q Consensus 353 ~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~ 394 (399)
+++++||++.+++.+.... .+...+.+||+|..
T Consensus 77 ~~~~~iG~~~~~l~~l~~~---------~~~~~~~~w~~l~~ 109 (110)
T cd08688 77 SANDAIGKVYIDLNPLLLK---------DSVSQISGWFPIYD 109 (110)
T ss_pred CCCCceEEEEEeHHHhccc---------CCccccCCeEEccc
Confidence 8999999999998763210 12334677777754
No 98
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.77 E-value=4.7e-18 Score=141.01 Aligned_cols=122 Identities=28% Similarity=0.438 Sum_probs=96.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecC--CCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPL--TKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 209 (399)
Q Consensus 132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~--~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~ 209 (399)
|+|+|++|++|+..+..+.+||||+|++.+. .....+.+|++++++.||+|||+|.| .+... ...|.|+|||++
T Consensus 2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f-~~~~~---~~~l~~~v~d~~ 77 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF-RVNPR---EHRLLFEVFDEN 77 (133)
T ss_pred EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEE-EEcCC---CCEEEEEEEECC
Confidence 8999999999999998899999999999753 11223679999999999999999999 45543 357999999999
Q ss_pred CCCC-cceeeEEecCcccCCCcce------eEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136 210 KYGH-DFLGEARFPLNRLRPHISR------DLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 268 (399)
Q Consensus 210 ~~~~-~~lG~~~i~l~~l~~~~~~------~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~ 268 (399)
..++ ++||++.+++.++...... ..|++|++ .. ......|+|++++.|
T Consensus 78 ~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~------~~-----~~~~~~G~l~~~~~~ 132 (133)
T cd04033 78 RLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRP------RS-----SKSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCCCeeEEEEEEHHHCCCcCccccccccchheeeee------cC-----CCCcceeEEEEEEee
Confidence 9887 9999999999998865432 34555543 11 112569999999987
No 99
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.77 E-value=3.4e-18 Score=144.09 Aligned_cols=108 Identities=23% Similarity=0.249 Sum_probs=87.5
Q ss_pred eEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeC-CCCceecceEEEEeccCcccccEEEEEEEeCCCC
Q psy12136 274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWK-TLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 352 (399)
Q Consensus 274 ~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~ 352 (399)
.|.|+|++|++|+.++..|.+||||++.+++ .+.+|+++.+ +.||+|||.|.|.+. +.....|.|.|||++..
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~----~~~kTk~~~~~t~nP~WNE~F~f~v~--~~~~~~l~v~V~d~~~~ 74 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN----QVLRTRPSQTRNGNPSWNEELMFVAA--EPFEDHLILSVEDRVGP 74 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECC----EEeeeEeccCCCCCCcccCcEEEEec--CccCCeEEEEEEEecCC
Confidence 4899999999999999999999999999953 6788998866 699999999999986 33346899999999988
Q ss_pred CCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136 353 KSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 395 (399)
Q Consensus 353 ~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~ 395 (399)
+++++||++.|++++...+ ..++..+.+||+|++.
T Consensus 75 ~~dd~lG~v~i~L~~l~~~--------~~~~~~~~~W~~L~~~ 109 (150)
T cd04019 75 NKDEPLGRAVIPLNDIERR--------VDDRPVPSRWFSLERP 109 (150)
T ss_pred CCCCeEEEEEEEHHHCccc--------CCCCccCCceEECcCC
Confidence 8899999999999875422 1223445666666654
No 100
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.77 E-value=3.9e-18 Score=138.88 Aligned_cols=99 Identities=16% Similarity=0.218 Sum_probs=82.6
Q ss_pred eEEEEEEeeec---CCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCC
Q psy12136 274 ALIVNLIKCTN---LIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 350 (399)
Q Consensus 274 ~L~v~v~~a~~---L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~ 350 (399)
.|.|+|++|+| |..++..|.+||||++.++ .++.+|++++++.||+|||+|.|.+.. . ...|.|+|||++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g----~~~~rTk~~~~~~nP~WnE~f~f~v~~--~-~~~l~v~V~d~d 73 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYG----PKWVRTRTVEDSSNPRWNEQYTWPVYD--P-CTVLTVGVFDNS 73 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEEC----CEEeEcCcccCCCCCcceeEEEEEecC--C-CCEEEEEEEECC
Confidence 37899999999 8888889999999999994 367899999999999999999999863 2 358999999998
Q ss_pred CC------CCCeeeEEEEEccCCC--CCcchhhhhhh
Q psy12136 351 YG------KSNDYLGCLELCCNSK--GDRLRHWVDMM 379 (399)
Q Consensus 351 ~~------~~d~~lG~~~i~l~~~--~~~~~~w~~l~ 379 (399)
.. .+|++||++.|++.+. +....+|++|.
T Consensus 74 ~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~ 110 (126)
T cd08379 74 QSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLL 110 (126)
T ss_pred CccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeE
Confidence 76 3799999999998864 33344555554
No 101
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.77 E-value=8.8e-18 Score=138.41 Aligned_cols=122 Identities=28% Similarity=0.438 Sum_probs=97.8
Q ss_pred CEEEEEEEEecCCCCCCC--CCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEE
Q psy12136 130 CSLHVTLHRAKGLRAMDI--HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLD 207 (399)
Q Consensus 130 ~~L~V~V~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d 207 (399)
+.|+|+|++|++|+..+. .+.+||||+|.+. ..+++|++++++.||+|||.|.| .+.. .....|.|+|||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~-----~~~~kT~~~~~t~~P~Wne~f~~-~~~~--~~~~~l~i~v~d 72 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG-----AQRFKTQTIPNTLNPKWNYWCEF-PIFS--AQNQLLKLILWD 72 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC-----CEEEecceecCCcCCccCCcEEE-EecC--CCCCEEEEEEEE
Confidence 479999999999999988 7899999999984 46889999999999999999999 3543 335789999999
Q ss_pred cCCCCC-cceeeEEecCcccCC---CcceeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136 208 DDKYGH-DFLGEARFPLNRLRP---HISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 268 (399)
Q Consensus 208 ~~~~~~-~~lG~~~i~l~~l~~---~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~ 268 (399)
++..++ ++||++.++|.++.. ......|+.|..... .......|+|++++.+
T Consensus 73 ~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~---------~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 73 KDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRP---------GKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCccc---------CccccccceEEEEEEC
Confidence 999877 999999999999873 233467777764211 1223579999998753
No 102
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.76 E-value=5.4e-18 Score=134.59 Aligned_cols=103 Identities=28% Similarity=0.326 Sum_probs=87.9
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCC
Q psy12136 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 354 (399)
Q Consensus 275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~ 354 (399)
|.|+|++|++|+..+..+.+||||++++.+ .+++|++++++.||+|||.|.|.+.. .....|.|+|||++.
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~----~~~kT~v~~~t~nP~Wne~f~f~v~~--~~~~~l~v~v~d~~~--- 72 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGK----TTQKSKVKERTNNPVWEEGFTFLVRN--PENQELEIEVKDDKT--- 72 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECC----EEEeCccccCCCCCcccceEEEEeCC--CCCCEEEEEEEECCC---
Confidence 789999999999988889999999999953 78899999999999999999999974 334689999999875
Q ss_pred CeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCCC
Q psy12136 355 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP 396 (399)
Q Consensus 355 d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~~ 396 (399)
+++||++.|++.+ +...++..+.+||+|.+..
T Consensus 73 ~~~iG~~~i~l~~----------l~~~~~~~~~~w~~L~~~g 104 (105)
T cd04050 73 GKSLGSLTLPLSE----------LLKEPDLTLDQPFPLDNSG 104 (105)
T ss_pred CCccEEEEEEHHH----------hhccccceeeeeEecCCCC
Confidence 7899999999754 4444556688999998754
No 103
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.76 E-value=3.8e-18 Score=136.67 Aligned_cols=102 Identities=26% Similarity=0.413 Sum_probs=87.9
Q ss_pred EEEEEEEecCCCCCCC-CCCCCcEEEEEEecCCCCCceEecccccCCCCCee-cceEEeceeCcccCCCceEEEEEEEcC
Q psy12136 132 LHVTLHRAKGLRAMDI-HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEF-HEKLTFYSVSETDLSLQSLHILVLDDD 209 (399)
Q Consensus 132 L~V~V~~a~~L~~~~~-~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~w-ne~f~f~~v~~~~l~~~~L~~~V~d~~ 209 (399)
|.|+|++|++|+.++. .+.+||||+|++. ..++||++++++.||+| ||.|.| .++..++....|.|+|||++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~-----~~~~kT~v~~~~~nP~W~ne~f~f-~i~~~~l~~~~l~i~V~d~d 74 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG-----STTYKTDVVKKSLNPVWNSEWFRF-EVDDEELQDEPLQIRVMDHD 74 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEEC-----CeeEecceecCCCCCcccCcEEEE-EcChHHcCCCeEEEEEEeCC
Confidence 6899999999999884 6889999999995 37899999999999999 999999 57776666679999999999
Q ss_pred CCCC-cceeeEEecCcccCCC---cceeEEEeec
Q psy12136 210 KYGH-DFLGEARFPLNRLRPH---ISRDLCLNLC 239 (399)
Q Consensus 210 ~~~~-~~lG~~~i~l~~l~~~---~~~~~~~~L~ 239 (399)
..++ ++||++.+++.++... .....|++|.
T Consensus 75 ~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~ 108 (110)
T cd08688 75 TYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIY 108 (110)
T ss_pred CCCCCCceEEEEEeHHHhcccCCccccCCeEEcc
Confidence 9888 9999999999999862 3355677664
No 104
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.76 E-value=5e-18 Score=139.68 Aligned_cols=91 Identities=26% Similarity=0.476 Sum_probs=79.4
Q ss_pred eEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEecc-CcccccEEEEEEEeCCCC
Q psy12136 274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI-TELSKQTLVITVWDKDYG 352 (399)
Q Consensus 274 ~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-~~l~~~~l~i~V~d~~~~ 352 (399)
+|.|+|++|++|+..+..|.+||||++++.+ .+++|+++.++.||+|||.|.|.+.. ..+....|.|+|||++.+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~----~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~ 76 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG----QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRS 76 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC----EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCC
Confidence 4899999999999998889999999999853 67899999999999999999999863 223346899999999987
Q ss_pred C-CCeeeEEEEEccCCC
Q psy12136 353 K-SNDYLGCLELCCNSK 368 (399)
Q Consensus 353 ~-~d~~lG~~~i~l~~~ 368 (399)
+ ++++||++.|++++.
T Consensus 77 ~~~d~~lG~v~i~l~~l 93 (127)
T cd04022 77 GRRRSFLGRVRISGTSF 93 (127)
T ss_pred cCCCCeeeEEEEcHHHc
Confidence 6 799999999999864
No 105
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.76 E-value=3.9e-18 Score=143.20 Aligned_cols=106 Identities=23% Similarity=0.348 Sum_probs=85.6
Q ss_pred eEEEEEEeeecCCCCCCCC--------------CCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccc
Q psy12136 274 ALIVNLIKCTNLIPMDSNG--------------FSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSK 339 (399)
Q Consensus 274 ~L~v~v~~a~~L~~~~~~g--------------~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~ 339 (399)
.|.|+|++|++|+.++..+ .+||||+|.+.+ .+.+|++++++.||+|||+|.|.+..... .
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g----~~~kT~v~~~t~nPvWNE~f~f~v~~p~~-~ 75 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG----QKVKTSVKKNSYNPEWNEQIVFPEMFPPL-C 75 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC----EeeecceEcCCCCCCcceEEEEEeeCCCc-C
Confidence 4789999999999988543 689999999853 56799999999999999999999754433 3
Q ss_pred cEEEEEEEeCCCCCCCeeeEEEEEccCCC-CCcch--------hhhhhhcCCCC
Q psy12136 340 QTLVITVWDKDYGKSNDYLGCLELCCNSK-GDRLR--------HWVDMMKYPDH 384 (399)
Q Consensus 340 ~~l~i~V~d~~~~~~d~~lG~~~i~l~~~-~~~~~--------~w~~l~~~p~~ 384 (399)
..|.|+|||++..++|++||++.|++... ..+.+ +|+.|+..|+.
T Consensus 76 ~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~ 129 (151)
T cd04018 76 ERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPRE 129 (151)
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCccc
Confidence 68999999999998999999999998863 34443 55555555543
No 106
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.76 E-value=3.3e-18 Score=137.19 Aligned_cols=94 Identities=28% Similarity=0.429 Sum_probs=82.2
Q ss_pred eeEEEEEEeeecCCCCCCC-CCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcc-cccEEEEEEEeCC
Q psy12136 273 RALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITEL-SKQTLVITVWDKD 350 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~~-g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l-~~~~l~i~V~d~~ 350 (399)
|.|.|+|++|++|+..+.. +.+||||+|++...+ +..++|++++++.||+|||+|.|.+...++ ....|.|+|||++
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~-~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFG-KPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCC-CccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence 5799999999999999887 899999999986532 367899999999999999999998875443 3468999999999
Q ss_pred CCCCCeeeEEEEEccCC
Q psy12136 351 YGKSNDYLGCLELCCNS 367 (399)
Q Consensus 351 ~~~~d~~lG~~~i~l~~ 367 (399)
.++.+++||++.+++.+
T Consensus 80 ~~~~dd~lG~~~i~l~~ 96 (111)
T cd04041 80 RFTADDRLGRVEIDLKE 96 (111)
T ss_pred CCCCCCcceEEEEEHHH
Confidence 99899999999999876
No 107
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.76 E-value=1.1e-17 Score=135.41 Aligned_cols=103 Identities=37% Similarity=0.553 Sum_probs=86.9
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCC
Q psy12136 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 354 (399)
Q Consensus 275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~ 354 (399)
++|.|++|++|+..+..+.+||||++++. ..+++|++++++.||.|||+|.|.+.. .....|.|+|||++..++
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~----~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~~l~v~v~d~~~~~~ 75 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLG----NEKYKSKVCSKTLNPQWLEQFDLHLFD--DQSQILEIEVWDKDTGKK 75 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEEC----CEeEecccccCCCCCceeEEEEEEecC--CCCCEEEEEEEECCCCCC
Confidence 78999999999999888999999999994 367899999999999999999999863 235789999999999889
Q ss_pred CeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136 355 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 395 (399)
Q Consensus 355 d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~ 395 (399)
+++||++.+++++.. ++.....|++|.+.
T Consensus 76 ~~~iG~~~~~l~~l~------------~~~~~~~w~~L~~~ 104 (116)
T cd08376 76 DEFIGRCEIDLSALP------------REQTHSLELELEDG 104 (116)
T ss_pred CCeEEEEEEeHHHCC------------CCCceEEEEEccCC
Confidence 999999999987643 13345666666654
No 108
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.76 E-value=3.8e-18 Score=136.85 Aligned_cols=95 Identities=26% Similarity=0.413 Sum_probs=82.4
Q ss_pred CEEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccC-CCceEEEEEEE
Q psy12136 130 CSLHVTLHRAKGLRAMDIH-GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL-SLQSLHILVLD 207 (399)
Q Consensus 130 ~~L~V~V~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l-~~~~L~~~V~d 207 (399)
+.|+|+|++|++|+..+.. +.+||||+|++.+.+ ...++|++++++.||+|||.|.| .+...++ ....|.|+|||
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~--~~~~kT~v~~~t~nP~Wne~f~f-~~~~~~~~~~~~l~~~V~d 77 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFG--KPLYSTRIIRKDLNPVWEETWFV-LVTPDEVKAGERLSCRLWD 77 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCC--CccEeeeeECCCCCCccceeEEE-EeCchhccCCCEEEEEEEe
Confidence 5799999999999999987 899999999996533 35689999999999999999999 4554433 34689999999
Q ss_pred cCCCCC-cceeeEEecCcccC
Q psy12136 208 DDKYGH-DFLGEARFPLNRLR 227 (399)
Q Consensus 208 ~~~~~~-~~lG~~~i~l~~l~ 227 (399)
++..++ ++||++.+++.++.
T Consensus 78 ~d~~~~dd~lG~~~i~l~~l~ 98 (111)
T cd04041 78 SDRFTADDRLGRVEIDLKELI 98 (111)
T ss_pred CCCCCCCCcceEEEEEHHHHh
Confidence 999987 99999999999997
No 109
>KOG1030|consensus
Probab=99.75 E-value=3.8e-18 Score=141.05 Aligned_cols=97 Identities=36% Similarity=0.631 Sum_probs=86.0
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136 129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 208 (399)
Q Consensus 129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~ 208 (399)
-+.|+|+|++|.||..+|..+.+||||.+.+. .++.||+++++++||+|||.|.| .+... ...|+++|||+
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg-----~q~lkT~~v~~n~NPeWNe~ltf-~v~d~---~~~lkv~VyD~ 75 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELG-----NQKLKTRVVYKNLNPEWNEELTF-TVKDP---NTPLKVTVYDK 75 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEEC-----CeeeeeeeecCCCCCcccceEEE-EecCC---CceEEEEEEeC
Confidence 36799999999999999988999999999994 68999999999999999999999 45544 47899999999
Q ss_pred CCCCC-cceeeEEecCcccCCCcceeE
Q psy12136 209 DKYGH-DFLGEARFPLNRLRPHISRDL 234 (399)
Q Consensus 209 ~~~~~-~~lG~~~i~l~~l~~~~~~~~ 234 (399)
|+++. |+||+++|+|..+.......+
T Consensus 76 D~fs~dD~mG~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 76 DTFSSDDFMGEATIPLKPLLEAQKMDY 102 (168)
T ss_pred CCCCcccccceeeeccHHHHHHhhhhc
Confidence 99988 999999999999887654443
No 110
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.75 E-value=8.3e-18 Score=134.95 Aligned_cols=108 Identities=25% Similarity=0.280 Sum_probs=89.1
Q ss_pred ccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEecc--CcccccEEEEEEE
Q psy12136 270 TKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI--TELSKQTLVITVW 347 (399)
Q Consensus 270 ~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~--~~l~~~~l~i~V~ 347 (399)
|+.+.|.|+|++|++|+ ++.+||||++++.+ .+++|++++++.||.|||+|.|.+.. .++.+..|.|+||
T Consensus 1 ~~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~ 72 (111)
T cd04011 1 PQDFQVRVRVIEARQLV----GGNIDPVVKVEVGG----QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVY 72 (111)
T ss_pred CCcEEEEEEEEEcccCC----CCCCCCEEEEEECC----EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEE
Confidence 34678999999999997 57899999999963 57789999999999999999999743 2344578999999
Q ss_pred eCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCC
Q psy12136 348 DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 394 (399)
Q Consensus 348 d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~ 394 (399)
|++.++++++||++.|++++...+..|. ...+|++|..
T Consensus 73 d~~~~~~~~~iG~~~i~l~~v~~~~~~~---------~~~~w~~L~~ 110 (111)
T cd04011 73 DSRSLRSDTLIGSFKLDVGTVYDQPDHA---------FLRKWLLLTD 110 (111)
T ss_pred cCcccccCCccEEEEECCccccCCCCCc---------ceEEEEEeeC
Confidence 9998888999999999998754333332 4689999865
No 111
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.75 E-value=2.1e-17 Score=134.77 Aligned_cols=115 Identities=27% Similarity=0.390 Sum_probs=95.4
Q ss_pred CEEEEEEEEecCCCCCCC------CCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEE
Q psy12136 130 CSLHVTLHRAKGLRAMDI------HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHI 203 (399)
Q Consensus 130 ~~L~V~V~~a~~L~~~~~------~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~ 203 (399)
+.|.|+|++|+||+..+. .+.+||||+|++. ...++|++++++.||+|||.|.| .+... ....|.|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~-----~~~~kT~~~~~t~~P~W~e~f~~-~v~~~--~~~~l~i 72 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG-----AQTFKSKVIKENLNPKWNEVYEA-VVDEV--PGQELEI 72 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC-----CEeEEccccCCCCCCcccceEEE-EeCCC--CCCEEEE
Confidence 468999999999998875 3689999999995 37899999999999999999999 35432 3578999
Q ss_pred EEEEcCCCCCcceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136 204 LVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 268 (399)
Q Consensus 204 ~V~d~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~ 268 (399)
+|||++..++++||++.+++.++........|++|.. ...|+|++.+.+
T Consensus 73 ~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~----------------~~~G~~~~~~~~ 121 (121)
T cd08391 73 ELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLED----------------VKSGRLHLKLEW 121 (121)
T ss_pred EEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcC----------------CCCceEEEEEeC
Confidence 9999998834999999999999987776778888853 257889887653
No 112
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.75 E-value=4.6e-17 Score=136.70 Aligned_cols=125 Identities=18% Similarity=0.243 Sum_probs=98.0
Q ss_pred EEEEEEEecC--CCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcc------cCCCceEEE
Q psy12136 132 LHVTLHRAKG--LRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET------DLSLQSLHI 203 (399)
Q Consensus 132 L~V~V~~a~~--L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~------~l~~~~L~~ 203 (399)
..++|+.|++ |+..+..+.+||||++++..+....++.||+++++|+||+|||+|.| .|+.. .+....|.|
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f-~I~~~~~~~~R~l~~~~L~~ 82 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKL-NINRKHRSFQRVFKRHGLKF 82 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEE-EeccccchhhhhccCCcEEE
Confidence 4556666666 77888788899999999843233568999999999999999999999 57654 355678999
Q ss_pred EEEEcCCC-CC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136 204 LVLDDDKY-GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 270 (399)
Q Consensus 204 ~V~d~~~~-~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~ 270 (399)
+|||.+.+ ++ ++||++.++|+.+........|++|.+. .....|+|++.++.-.
T Consensus 83 ~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~-------------~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 83 EVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG-------------RKATGGKLEVKVRLRE 138 (155)
T ss_pred EEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC-------------CCCcCCEEEEEEEecC
Confidence 99999986 44 9999999999999877666678887531 1256788888876643
No 113
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.75 E-value=2.3e-17 Score=134.44 Aligned_cols=117 Identities=28% Similarity=0.455 Sum_probs=94.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 211 (399)
Q Consensus 132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~ 211 (399)
|.|+|++|++|++.+..|.+||||+|.+.. ....||++++++.||+|||.|.| .+... ...|.|.|||++..
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~----~~~~kT~v~~~t~nP~Wne~f~~-~~~~~---~~~l~v~v~d~~~~ 73 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDN----EVIIRTATVWKTLNPFWGEEYTV-HLPPG---FHTVSFYVLDEDTL 73 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECC----EeeeeeeeEcCCCCCcccceEEE-eeCCC---CCEEEEEEEECCCC
Confidence 789999999999999999999999999842 23579999999999999999999 45432 36899999999998
Q ss_pred CC-cceeeEEecCcccCCCc-ceeEEEeecccCCCCCccccccccccccceeEEEEEe
Q psy12136 212 GH-DFLGEARFPLNRLRPHI-SRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLC 267 (399)
Q Consensus 212 ~~-~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~ 267 (399)
++ ++||++.+++.++.... ....|++|.+.. ......|+|++.+.
T Consensus 74 ~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~-----------~~~~~~G~i~l~~~ 120 (121)
T cd04054 74 SRDDVIGKVSLTREVISAHPRGIDGWMNLTEVD-----------PDEEVQGEIHLELS 120 (121)
T ss_pred CCCCEEEEEEEcHHHhccCCCCCCcEEECeeeC-----------CCCccccEEEEEEE
Confidence 88 99999999998887532 356788886421 11246799988764
No 114
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.75 E-value=2.1e-17 Score=134.48 Aligned_cols=103 Identities=20% Similarity=0.291 Sum_probs=84.6
Q ss_pred EEEEEEeeecCCCCC-CCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCC
Q psy12136 275 LIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 353 (399)
Q Consensus 275 L~v~v~~a~~L~~~~-~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~ 353 (399)
|.|.|++|+||+.++ ..|.+||||+|.+. +...++|++++++.||.|||+|.|.+... ...|.|.|||++.++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~---~~~~~kT~v~~kt~~P~WnE~F~f~v~~~---~~~l~~~v~d~~~~~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD---QEEVFRTKTVEKSLCPFFGEDFYFEIPRT---FRHLSFYIYDRDVLR 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEEC---CccEEEeeEEECCCCCccCCeEEEEcCCC---CCEEEEEEEECCCCC
Confidence 678999999999874 46789999999994 22578999999999999999999999732 368999999999998
Q ss_pred CCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136 354 SNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 395 (399)
Q Consensus 354 ~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~ 395 (399)
++++||++.+++++... +.....|++|++.
T Consensus 76 ~~~~iG~~~i~l~~l~~------------~~~~~~w~~L~~~ 105 (121)
T cd08401 76 RDSVIGKVAIKKEDLHK------------YYGKDTWFPLQPV 105 (121)
T ss_pred CCceEEEEEEEHHHccC------------CCCcEeeEEEEcc
Confidence 99999999999876431 2235667777654
No 115
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.75 E-value=4.9e-17 Score=133.47 Aligned_cols=121 Identities=23% Similarity=0.341 Sum_probs=95.5
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136 130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 209 (399)
Q Consensus 130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~ 209 (399)
..|+|+|++|++|...+..|.+||||++.+. .++++|++++++.||+|||.|.|. +... ...|.|+|||++
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~i~V~d~~ 73 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCE-----GESVRSPVQKDTLSPEFDTQAIFY-RKKP---RSPIKIQVWNSN 73 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEEC-----CEEEEeCccCCCCCCcccceEEEE-ecCC---CCEEEEEEEECC
Confidence 4689999999999999988999999999984 467899999999999999999993 4322 578999999999
Q ss_pred CCCCcceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136 210 KYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 270 (399)
Q Consensus 210 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~ 270 (399)
..++++||++.+++.++..... .+++|.... ..+.....|.|.+.+.+.+
T Consensus 74 ~~~d~~lG~~~~~l~~~~~~~~--~~~~l~~~~---------~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 74 LLCDEFLGQATLSADPNDSQTL--RTLPLRKRG---------RDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCCCCceEEEEEecccCCCcCc--eEEEcccCC---------CCCCCCCCCEEEEEEEEcc
Confidence 8777999999999998754443 445554211 1123467899988876644
No 116
>KOG1030|consensus
Probab=99.74 E-value=8.5e-18 Score=138.98 Aligned_cols=98 Identities=33% Similarity=0.391 Sum_probs=86.2
Q ss_pred ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCC
Q psy12136 272 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 351 (399)
Q Consensus 272 ~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~ 351 (399)
-|.|.|.|++|.||...|..+++||||.+.+++ ++.+|+++++++||+|||.|+|.+. +. ...|+++|||+|.
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~----q~lkT~~v~~n~NPeWNe~ltf~v~--d~-~~~lkv~VyD~D~ 77 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN----QKLKTRVVYKNLNPEWNEELTFTVK--DP-NTPLKVTVYDKDT 77 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEECC----eeeeeeeecCCCCCcccceEEEEec--CC-CceEEEEEEeCCC
Confidence 378999999999999998888999999999954 8899999999999999999999997 33 4789999999999
Q ss_pred CCCCeeeEEEEEccCCCCCcchhhh
Q psy12136 352 GKSNDYLGCLELCCNSKGDRLRHWV 376 (399)
Q Consensus 352 ~~~d~~lG~~~i~l~~~~~~~~~w~ 376 (399)
++.||+||.++|++...-.....|+
T Consensus 78 fs~dD~mG~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 78 FSSDDFMGEATIPLKPLLEAQKMDY 102 (168)
T ss_pred CCcccccceeeeccHHHHHHhhhhc
Confidence 9999999999999987544444444
No 117
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.74 E-value=2e-17 Score=135.34 Aligned_cols=89 Identities=30% Similarity=0.534 Sum_probs=79.4
Q ss_pred eEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCC
Q psy12136 274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 353 (399)
Q Consensus 274 ~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~ 353 (399)
+|+|+|++|++|+.++..+.+||||+|++. ..+++|++++++.||.|||+|.|.+... ....|.|+|||++..+
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~----~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~~l~~~v~d~~~~~ 74 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYN----GQTLETSVVKKSCYPRWNEVFEFELMEG--ADSPLSVEVWDWDLVS 74 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEEC----CEEEeceeecCCCCCccCcEEEEEcCCC--CCCEEEEEEEECCCCC
Confidence 589999999999999888899999999984 3678999999999999999999998743 2568999999999988
Q ss_pred CCeeeEEEEEccCCC
Q psy12136 354 SNDYLGCLELCCNSK 368 (399)
Q Consensus 354 ~d~~lG~~~i~l~~~ 368 (399)
++++||++.+++++.
T Consensus 75 ~~~~iG~~~~~l~~l 89 (123)
T cd04025 75 KNDFLGKVVFSIQTL 89 (123)
T ss_pred CCcEeEEEEEEHHHc
Confidence 899999999998764
No 118
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.74 E-value=2.5e-17 Score=136.75 Aligned_cols=114 Identities=27% Similarity=0.381 Sum_probs=93.0
Q ss_pred eccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEe
Q psy12136 269 STKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD 348 (399)
Q Consensus 269 ~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d 348 (399)
....|.|.|+|++|++|+..+..|.+||||++.+. ..+++|++++++.||.|||+|.|.+. ++....|.|+|||
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~----~~~~kT~vi~~t~nP~Wne~f~f~v~--~~~~~~l~i~V~D 84 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG----SQEHKTKVVSDTLNPKWNSSMQFFVK--DLEQDVLCITVFD 84 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC----CEeeeccccCCCCCCccCceEEEEec--CccCCEEEEEEEE
Confidence 44568999999999999999989999999999984 36799999999999999999999986 4445789999999
Q ss_pred CCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136 349 KDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 395 (399)
Q Consensus 349 ~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~ 395 (399)
++.+++|++||++.|++.+......+ .+..+.+|+.|...
T Consensus 85 ~d~~~~d~~lG~~~i~l~~l~~~~~~-------~~~~~~~~~~~~~~ 124 (136)
T cd08375 85 RDFFSPDDFLGRTEIRVADILKETKE-------SKGPITKRLLLHEV 124 (136)
T ss_pred CCCCCCCCeeEEEEEEHHHhcccccc-------CCCcEEEEeccccc
Confidence 99988899999999998764322111 22345677777543
No 119
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.74 E-value=5.6e-17 Score=133.22 Aligned_cols=116 Identities=25% Similarity=0.400 Sum_probs=94.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCC
Q psy12136 131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK 210 (399)
Q Consensus 131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~ 210 (399)
.|.|+|++|++|+..+..+.+||||+|.+...+ ...+||++++++.||+|||+|.| .+... ....|.|+|||++.
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~--~~~~kT~~~~~t~~P~Wne~f~f-~i~~~--~~~~L~i~v~d~d~ 76 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGK--RRIAKTRTIYDTLNPRWDEEFEL-EVPAG--EPLWISATVWDRSF 76 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCCC--eeeecccEecCCCCCcccceEEE-EcCCC--CCCEEEEEEEECCC
Confidence 689999999999999988999999999975321 35689999999999999999999 45543 24789999999999
Q ss_pred CCC-cceeeEEecCcccCC---CcceeEEEeecccCCCCCccccccccccccceeEEEEEeee
Q psy12136 211 YGH-DFLGEARFPLNRLRP---HISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS 269 (399)
Q Consensus 211 ~~~-~~lG~~~i~l~~l~~---~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~ 269 (399)
.++ ++||++.++|.++.. +.....|+.|. ..|++++.+.+.
T Consensus 77 ~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~------------------~~g~i~l~~~~~ 121 (126)
T cd04043 77 VGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD------------------TQGRLLLRVSME 121 (126)
T ss_pred CCCCceEEEEEEecCHHHcCCCCCCceEEEEcC------------------CCCeEEEEEEEe
Confidence 877 999999999988643 33556787774 257888877664
No 120
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.74 E-value=2.8e-17 Score=133.57 Aligned_cols=105 Identities=26% Similarity=0.362 Sum_probs=86.1
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCC
Q psy12136 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 354 (399)
Q Consensus 275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~ 354 (399)
|.|+|++|++|+..+..+.+||||++++.+.. ..+++|++++++.||+|||+|.|.+... ....|.|+|||++.. +
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~-~~~~kT~vv~~t~nP~Wne~f~f~i~~~--~~~~l~v~v~d~d~~-~ 77 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTAS-DEKKRTKTIKNSINPVWNETFEFRIQSQ--VKNVLELTVMDEDYV-M 77 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCC-CccCccceecCCCCCccceEEEEEeCcc--cCCEEEEEEEECCCC-C
Confidence 78999999999998888899999999986422 3678999999999999999999998743 345799999999988 8
Q ss_pred CeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136 355 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 395 (399)
Q Consensus 355 d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~ 395 (399)
+++||++.++++... ++..+..|++|.+.
T Consensus 78 ~~~iG~~~~~l~~l~------------~g~~~~~~~~L~~~ 106 (119)
T cd04036 78 DDHLGTVLFDVSKLK------------LGEKVRVTFSLNPQ 106 (119)
T ss_pred CcccEEEEEEHHHCC------------CCCcEEEEEECCCC
Confidence 999999999997643 23345666666654
No 121
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=5.1e-17 Score=133.65 Aligned_cols=118 Identities=19% Similarity=0.277 Sum_probs=97.5
Q ss_pred EEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCCCC-c
Q psy12136 136 LHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-D 214 (399)
Q Consensus 136 V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~~~-~ 214 (399)
|++|++|+. ..+.+||||+|++. ..+++|++++++.||+|||.|.| .+.........|.|+|||++..++ +
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~-----~~~~kT~v~~~~~nP~Wne~f~f-~~~~~~~~~~~l~~~v~d~~~~~~d~ 73 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFR-----GVKKKTRVLENELNPVWNETFEW-PLAGSPDPDESLEIVVKDYEKVGRNR 73 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEEC-----CEeeecceeCCCcCCcccceEEE-EeCCCcCCCCEEEEEEEECCCCCCCc
Confidence 789999999 57889999999994 46789999999999999999999 454332346889999999999877 9
Q ss_pred ceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeeccce
Q psy12136 215 FLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKR 273 (399)
Q Consensus 215 ~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~~ 273 (399)
+||++.++|+++..+.....|++|.+.. .....|+|++.++|.|..+
T Consensus 74 ~iG~~~~~l~~l~~~~~~~~~~~L~~~~------------~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 74 LIGSATVSLQDLVSEGLLEVTEPLLDSN------------GRPTGATISLEVSYQPPDG 120 (127)
T ss_pred eEEEEEEEhhHcccCCceEEEEeCcCCC------------CCcccEEEEEEEEEeCCCC
Confidence 9999999999999887778888885310 1235689999999988643
No 122
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.74 E-value=5.4e-17 Score=134.89 Aligned_cols=121 Identities=22% Similarity=0.388 Sum_probs=95.2
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCc----ccCC--CceEEEE
Q psy12136 131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE----TDLS--LQSLHIL 204 (399)
Q Consensus 131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~----~~l~--~~~L~~~ 204 (399)
+|+|+|++|++|+..+..+.+||||+|.+. ..++||++++++.||+|||.|.|..+.. .++. ...|.|+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~ 76 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFL-----NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVE 76 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEEC-----CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEE
Confidence 799999999999999999999999999995 4688999999999999999999943322 1111 2578999
Q ss_pred EEEcCCCCC-cceeeEEe-cCcccCC---CcceeEEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136 205 VLDDDKYGH-DFLGEARF-PLNRLRP---HISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 270 (399)
Q Consensus 205 V~d~~~~~~-~~lG~~~i-~l~~l~~---~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~ 270 (399)
|||++..++ ++||++.+ ++..+.. ......|++|... ....|+|++++.+.+
T Consensus 77 V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~--------------~~~~Geil~~~~~~~ 133 (135)
T cd04017 77 LFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG--------------GQSAGELLAAFELIE 133 (135)
T ss_pred EEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecC--------------CCchhheeEEeEEEE
Confidence 999999888 99999986 4444432 3456678887531 247899999987764
No 123
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.73 E-value=3.4e-17 Score=133.53 Aligned_cols=100 Identities=28% Similarity=0.479 Sum_probs=84.4
Q ss_pred eEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCC
Q psy12136 274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 353 (399)
Q Consensus 274 ~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~ 353 (399)
+|+|+|++|++|+..+..|.+||||++.+.+ +..++|++++++.||+|||.|.|.+. .+ ...|.|+|||++..+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~---~~~~kT~~~~~t~nP~Wne~f~f~v~--~~-~~~l~~~v~D~d~~~ 74 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGG---KTVYKSKTIYKNLNPVWDEKFTLPIE--DV-TQPLYIKVFDYDRGL 74 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECC---EEEEEeeeccCCCCCccceeEEEEec--CC-CCeEEEEEEeCCCCC
Confidence 5899999999999999889999999999842 36889999999999999999999986 33 468999999999998
Q ss_pred CCeeeEEEEEccCCCC--Ccchhhhhhh
Q psy12136 354 SNDYLGCLELCCNSKG--DRLRHWVDMM 379 (399)
Q Consensus 354 ~d~~lG~~~i~l~~~~--~~~~~w~~l~ 379 (399)
++++||++.+++.+.. ...+.|++|.
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~~~~~~~L~ 102 (121)
T cd04042 75 TDDFMGSAFVDLSTLELNKPTEVKLKLE 102 (121)
T ss_pred CCcceEEEEEEHHHcCCCCCeEEEEECC
Confidence 9999999999998633 3444455544
No 124
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.73 E-value=1.9e-17 Score=131.75 Aligned_cols=94 Identities=22% Similarity=0.362 Sum_probs=79.5
Q ss_pred CEEEEEEEEecCCCCCCCC----CCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEE
Q psy12136 130 CSLHVTLHRAKGLRAMDIH----GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILV 205 (399)
Q Consensus 130 ~~L~V~V~~a~~L~~~~~~----~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V 205 (399)
+.|.|+|++|++|++.+.. +.+||||+|++. .+++||++++++.||+|||.|.| .+...+. ...|.|.|
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~-----~~~~kT~v~~~t~nPvWne~f~f-~v~~~~~-~~~L~~~V 73 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG-----RRVFRTSWRRHTLNPVFNERLAF-EVYPHEK-NFDIQFKV 73 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC-----CEeEeeeeecCCCCCcccceEEE-EEeCccC-CCEEEEEE
Confidence 4799999999999987642 358999999983 46789999999999999999999 4544332 46899999
Q ss_pred EEcCCCCC-cceeeEEecCcccCCCc
Q psy12136 206 LDDDKYGH-DFLGEARFPLNRLRPHI 230 (399)
Q Consensus 206 ~d~~~~~~-~~lG~~~i~l~~l~~~~ 230 (399)
||++..++ ++||++.++|++|..+.
T Consensus 74 ~D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 74 LDKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred EECCCCCCCcceEEEEEEHHHHHhhC
Confidence 99999988 99999999999987654
No 125
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.73 E-value=2.1e-17 Score=131.47 Aligned_cols=90 Identities=29% Similarity=0.417 Sum_probs=77.7
Q ss_pred eeEEEEEEeeecCCCCCCC----CCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEe
Q psy12136 273 RALIVNLIKCTNLIPMDSN----GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD 348 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~~----g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d 348 (399)
|.|.|+|++|++|+..+.. +.+||||++++. +.++||++++++.||+|||.|.|.+...+. ...|.|.|||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~----~~~~kT~v~~~t~nPvWne~f~f~v~~~~~-~~~L~~~V~D 75 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG----RRVFRTSWRRHTLNPVFNERLAFEVYPHEK-NFDIQFKVLD 75 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC----CEeEeeeeecCCCCCcccceEEEEEeCccC-CCEEEEEEEE
Confidence 5789999999999987632 358999999983 367899999999999999999999864432 4689999999
Q ss_pred CCCCCCCeeeEEEEEccCC
Q psy12136 349 KDYGKSNDYLGCLELCCNS 367 (399)
Q Consensus 349 ~~~~~~d~~lG~~~i~l~~ 367 (399)
++.+++|++||++.|+|++
T Consensus 76 ~d~~~~dd~IG~~~l~L~~ 94 (108)
T cd04039 76 KDKFSFNDYVATGSLSVQE 94 (108)
T ss_pred CCCCCCCcceEEEEEEHHH
Confidence 9999999999999999876
No 126
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.73 E-value=5.3e-17 Score=134.45 Aligned_cols=114 Identities=24% Similarity=0.371 Sum_probs=95.5
Q ss_pred CEEEEEEEEecCCCCCCCC----------CCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCc
Q psy12136 130 CSLHVTLHRAKGLRAMDIH----------GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQ 199 (399)
Q Consensus 130 ~~L~V~V~~a~~L~~~~~~----------~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~ 199 (399)
+.|+|+|++|++|...+.. +.+||||+|.+.. ....+|++++++.||.|||+|.| .+.. ..
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~----~~~~kT~~~~~t~~P~Wne~f~~-~v~~----~~ 74 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD----THIGKTSTKPKTNSPVWNEEFTT-EVHN----GR 74 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC----EEEeEEeEcCCCCCCCcceeEEE-EcCC----CC
Confidence 5799999999999988763 6799999999952 34578999999999999999999 4652 47
Q ss_pred eEEEEEEEcCCCCC-cceeeEEecCcccCC--CcceeEEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136 200 SLHILVLDDDKYGH-DFLGEARFPLNRLRP--HISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 270 (399)
Q Consensus 200 ~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~--~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~ 270 (399)
.|.|.|||++..+. ++||++.++|.++.. +.....|++|+ ..|+|++.+.|..
T Consensus 75 ~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------------------~~G~l~l~~~~~~ 130 (132)
T cd04014 75 NLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------------------PQGKLHVKIELKG 130 (132)
T ss_pred EEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc------------------CCcEEEEEEEEec
Confidence 89999999998877 999999999999887 45678888884 3589999988764
No 127
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.73 E-value=7.8e-17 Score=130.98 Aligned_cols=117 Identities=36% Similarity=0.574 Sum_probs=94.3
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136 130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 209 (399)
Q Consensus 130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~ 209 (399)
+.|.|+|++|++|+..+..+.+||||+|++. ...++|++++++.||.|||+|.|. +.. + ...|.|+|||++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~-----~~~~~T~~~~~t~nP~W~e~f~~~-~~~--~-~~~l~~~v~d~~ 71 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV-----NARLQTHTIYKTLNPEWNKIFTFP-IKD--I-HDVLEVTVYDED 71 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC-----CEeeecceecCCcCCccCcEEEEE-ecC--c-CCEEEEEEEECC
Confidence 5789999999999999988899999999995 356899999999999999999994 432 2 368999999999
Q ss_pred CCCC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136 210 KYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 268 (399)
Q Consensus 210 ~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~ 268 (399)
..++ ++||++.+++.++..+. ..|+.|... .......|+|.+++.+
T Consensus 72 ~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~-----------~~~~~~~G~i~l~~~~ 118 (119)
T cd08377 72 KDKKPEFLGKVAIPLLSIKNGE--RKWYALKDK-----------KLRTRAKGSILLEMDV 118 (119)
T ss_pred CCCCCceeeEEEEEHHHCCCCC--ceEEECccc-----------CCCCceeeEEEEEEEe
Confidence 8777 99999999999987654 346666431 0112468999988764
No 128
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.73 E-value=3.8e-17 Score=135.88 Aligned_cols=106 Identities=30% Similarity=0.404 Sum_probs=90.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcc-------------cCCC
Q psy12136 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET-------------DLSL 198 (399)
Q Consensus 132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~-------------~l~~ 198 (399)
|+|.|++|++|+.. ..+.+||||+|++..+ ....+++|++++++.||.|||+|.|. +... ++..
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~-~~~~~~rT~vv~~t~nP~Wne~f~f~-~~~~~~~~~~~~~~~~~~~~~ 77 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYS-SKTDTKRTKVKKKTNNPRFDEAFYFE-LTIGFSYEKKSFKVEEEDLEK 77 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecC-CcCCeeccceeeCCCCCCcceEEEEE-ccccccccccccccccccccc
Confidence 67999999999988 7789999999999743 23578999999999999999999994 4432 4456
Q ss_pred ceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136 199 QSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK 240 (399)
Q Consensus 199 ~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~ 240 (399)
..|.|+|||++..++ ++||++.++|.++........|+.|.+
T Consensus 78 ~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~ 120 (137)
T cd08675 78 SELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQP 120 (137)
T ss_pred cEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCC
Confidence 789999999999877 999999999999987767778888865
No 129
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.72 E-value=4.7e-17 Score=129.20 Aligned_cols=99 Identities=30% Similarity=0.361 Sum_probs=84.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 211 (399)
Q Consensus 132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~ 211 (399)
|.|+|++|++|+..+..+.+||||+|++. .+++||++++++.||+|||.|.| .+...+ ...|.|+|||++.
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f-~v~~~~--~~~l~v~v~d~~~- 72 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVG-----KTTQKSKVKERTNNPVWEEGFTF-LVRNPE--NQELEIEVKDDKT- 72 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEEC-----CEEEeCccccCCCCCcccceEEE-EeCCCC--CCEEEEEEEECCC-
Confidence 78999999999999888999999999995 47899999999999999999999 455422 4689999999887
Q ss_pred CCcceeeEEecCcccCCCc--ceeEEEeecc
Q psy12136 212 GHDFLGEARFPLNRLRPHI--SRDLCLNLCK 240 (399)
Q Consensus 212 ~~~~lG~~~i~l~~l~~~~--~~~~~~~L~~ 240 (399)
+++||++.++|.++.... ....|++|..
T Consensus 73 -~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 73 -GKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred -CCccEEEEEEHHHhhccccceeeeeEecCC
Confidence 689999999999987653 3456777753
No 130
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.72 E-value=3.3e-17 Score=133.03 Aligned_cols=101 Identities=24% Similarity=0.351 Sum_probs=84.2
Q ss_pred eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeeccee-CCCCceecceEEEEeccCcccccEEEEEEEeCCC
Q psy12136 273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKW-KTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 351 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~ 351 (399)
|.|.|+|++|++|+..+..+.+||||++.+.+ .+++|+++. ++.||+|||.|.|.+... ....|.|+|||++.
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~----~~~kT~~~~~~~~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~ 74 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG----VTKKTKTDFRGGQHPEWDEELRFEITED--KKPILKVAVFDDDK 74 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC----CccccccccCCCCCCccCceEEEEecCC--CCCEEEEEEEeCCC
Confidence 57999999999999998889999999999953 667888875 479999999999999743 34689999999998
Q ss_pred CCCCeeeEEEEEccCCC--CCcchhhhhhhc
Q psy12136 352 GKSNDYLGCLELCCNSK--GDRLRHWVDMMK 380 (399)
Q Consensus 352 ~~~d~~lG~~~i~l~~~--~~~~~~w~~l~~ 380 (399)
.+ +++||++.+++.+. +....+|++|..
T Consensus 75 ~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~ 104 (118)
T cd08681 75 RK-PDLIGDTEVDLSPALKEGEFDDWYELTL 104 (118)
T ss_pred CC-CcceEEEEEecHHHhhcCCCCCcEEecc
Confidence 76 89999999999863 345567776654
No 131
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.72 E-value=7.4e-17 Score=134.10 Aligned_cols=109 Identities=29% Similarity=0.452 Sum_probs=89.8
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccC-------------cccccE
Q psy12136 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT-------------ELSKQT 341 (399)
Q Consensus 275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-------------~l~~~~ 341 (399)
|.|.|++|++|+.+ ..+.+||||+|++.......+++|+++.++.||.|||+|.|.+... ++....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57899999999988 7889999999999754224789999999999999999999998643 335678
Q ss_pred EEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCCC
Q psy12136 342 LVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP 396 (399)
Q Consensus 342 l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~~ 396 (399)
|.|+|||++..+++++||++.|++.... .......|++|++..
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~------------~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQ------------QAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhcc------------CCCcccceEecCCcC
Confidence 9999999998888999999999987633 122457777777765
No 132
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.72 E-value=9.5e-17 Score=131.30 Aligned_cols=107 Identities=28% Similarity=0.381 Sum_probs=90.9
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCC
Q psy12136 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 354 (399)
Q Consensus 275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~ 354 (399)
|+|.|++|++|+.++..+.+||||++++.+. ....+|.+++++.||+|||+|.|.+... ....|.|+|||++.+++
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~--~~~~kT~~v~~t~nP~Wne~f~f~~~~~--~~~~L~~~V~d~d~~~~ 77 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKK--KINDRDNYIPNTLNPVFGKMFELEATLP--GNSILKISVMDYDLLGS 77 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCe--eccceeeEEECCCCCccceEEEEEecCC--CCCEEEEEEEECCCCCC
Confidence 7899999999999999999999999999542 2456788889999999999999987532 35689999999999989
Q ss_pred CeeeEEEEEccCCCCCcchhhhhhhcCCCCce
Q psy12136 355 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKH 386 (399)
Q Consensus 355 d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~ 386 (399)
+++||++.|+++...- ..||+.+...|....
T Consensus 78 dd~iG~~~i~l~~~~~-~~~~~~~~~~~~~~~ 108 (124)
T cd04037 78 DDLIGETVIDLEDRFF-SKHRATCGLPPTYEE 108 (124)
T ss_pred CceeEEEEEeeccccc-chHHHhccCCCcccc
Confidence 9999999999987543 688999888886553
No 133
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.72 E-value=8.5e-17 Score=133.70 Aligned_cols=112 Identities=19% Similarity=0.232 Sum_probs=87.8
Q ss_pred eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEecc-----Cccc--ccEEEEE
Q psy12136 273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI-----TELS--KQTLVIT 345 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~-----~~l~--~~~l~i~ 345 (399)
++|+|+|++|++|+.++..|.+||||+|.+.+ .+++|++++++.||.|||.|.|.+.. .++. ...|.|+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~----~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~ 76 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLN----QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVE 76 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEECC----eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEE
Confidence 47899999999999999999999999999953 67899999999999999999998531 1111 2479999
Q ss_pred EEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCCC
Q psy12136 346 VWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP 396 (399)
Q Consensus 346 V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~~ 396 (399)
|||++..++|++||++.+........ .| ++....+||+|....
T Consensus 77 V~d~d~~~~d~~iG~~~i~~~~~~~~--~~------~~~~~~~W~~L~~~~ 119 (135)
T cd04017 77 LFDQDSVGKDEFLGRSVAKPLVKLDL--EE------DFPPKLQWFPIYKGG 119 (135)
T ss_pred EEeCcCCCCCccceEEEeeeeeeccc--CC------CCCCCceEEEeecCC
Confidence 99999988999999999853221111 01 556778999987543
No 134
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.72 E-value=8.4e-17 Score=131.76 Aligned_cols=120 Identities=29% Similarity=0.390 Sum_probs=95.1
Q ss_pred CEEEEEEEEecCCCCCC-CCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136 130 CSLHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 208 (399)
Q Consensus 130 ~~L~V~V~~a~~L~~~~-~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~ 208 (399)
+.|.|+|++|++|+..+ ..+.+||||+|.+... ...++|++++++.||.|||.|.| .+.. ....|.|+|||+
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~---~~~~kT~~~~~~~~P~Wne~~~~-~v~~---~~~~l~~~v~d~ 74 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR---RELARTKVKKDTSNPVWNETKYI-LVNS---LTEPLNLTVYDF 74 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC---CcceEeeeecCCCCCcceEEEEE-EeCC---CCCEEEEEEEec
Confidence 46999999999999755 3467899999999632 36789999999999999999999 4652 257899999999
Q ss_pred CCCCC-cceeeEEecCcccCCCccee-EEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136 209 DKYGH-DFLGEARFPLNRLRPHISRD-LCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 270 (399)
Q Consensus 209 ~~~~~-~~lG~~~i~l~~l~~~~~~~-~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~ 270 (399)
+..++ ++||++.++|.++....... .+..+. . .....|+|+++++|.|
T Consensus 75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~------~--------~~k~~G~i~~~l~~~p 124 (124)
T cd04044 75 NDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLL------R--------NGKPVGELNYDLRFFP 124 (124)
T ss_pred CCCCCCceeEEEEEEHHHhccCccccCcchhhh------c--------CCccceEEEEEEEeCC
Confidence 98877 99999999999998765442 222221 1 1246799999999976
No 135
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.72 E-value=1.3e-16 Score=130.30 Aligned_cols=117 Identities=26% Similarity=0.406 Sum_probs=92.7
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 211 (399)
Q Consensus 132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~ 211 (399)
|+|+|++|++|+..+..+.+||||+|++.+ .+.+||++++++.||+|||.|.| .+.. ...|.|+|||++..
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~----~~~~kT~v~~~t~nP~Wne~f~~-~~~~----~~~l~i~V~d~~~~ 72 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG----GQTHSTDVAKKTLDPKWNEHFDL-TVGP----SSIITIQVFDQKKF 72 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECC----ccceEccEEcCCCCCcccceEEE-EeCC----CCEEEEEEEECCCC
Confidence 799999999999999889999999999952 46789999999999999999999 4543 47899999999987
Q ss_pred CC---cceeeEEecCcccCCCc-ceeEEEeecccCCCCCccccccccccccceeEEEEE
Q psy12136 212 GH---DFLGEARFPLNRLRPHI-SRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTL 266 (399)
Q Consensus 212 ~~---~~lG~~~i~l~~l~~~~-~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l 266 (399)
++ ++||++.+++.++.... ....|++|++... .......|+|.+.+
T Consensus 73 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~---------~~~~~~~G~v~~~~ 122 (123)
T cd08382 73 KKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKK---------SDNLSVRGKIVVSL 122 (123)
T ss_pred CCCCCceEeEEEEEHHHccccCCCccceeEeecCCC---------CCCceEeeEEEEEe
Confidence 53 69999999999987544 3356777754211 01124578887764
No 136
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.71 E-value=6.7e-17 Score=131.51 Aligned_cols=84 Identities=31% Similarity=0.438 Sum_probs=74.4
Q ss_pred eEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCC
Q psy12136 274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 353 (399)
Q Consensus 274 ~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~ 353 (399)
+|.|+|++|+||+.+ .+||||++.+.. .+.+|++++++.||+|||+|.|.+. .+....|.|+|||++..
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~----~~~kT~v~~~t~nP~Wne~F~f~~~--~~~~~~L~~~v~d~d~~- 69 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLGN----YKGSTKAIERTSNPEWNQVFAFSKD--RLQGSTLEVSVWDKDKA- 69 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEECC----ccccccccCCCCCCccceEEEEEcC--CCcCCEEEEEEEeCCCC-
Confidence 489999999999876 689999999953 6789999999999999999999975 44567899999999977
Q ss_pred CCeeeEEEEEccCCC
Q psy12136 354 SNDYLGCLELCCNSK 368 (399)
Q Consensus 354 ~d~~lG~~~i~l~~~ 368 (399)
++++||++.|++++.
T Consensus 70 ~~~~lG~~~i~l~~l 84 (121)
T cd08378 70 KDDFLGGVCFDLSEV 84 (121)
T ss_pred cCceeeeEEEEhHhC
Confidence 789999999999874
No 137
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.71 E-value=1.3e-16 Score=131.22 Aligned_cols=114 Identities=31% Similarity=0.472 Sum_probs=91.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCC
Q psy12136 131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK 210 (399)
Q Consensus 131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~ 210 (399)
+|+|+|++|++|+..+..+.+||||+|++. ...++|++++++.||+|||.|.|. +... ...|.|+|||++.
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~-----~~~~kT~~v~~t~~P~Wne~f~f~-~~~~---~~~l~i~v~d~d~ 72 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG-----KTKKRTKTIPQNLNPVWNEKFHFE-CHNS---SDRIKVRVWDEDD 72 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEEC-----CEeeecceecCCCCCccceEEEEE-ecCC---CCEEEEEEEECCC
Confidence 699999999999999988999999999984 357899999999999999999993 4322 3579999999985
Q ss_pred C-----------CC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEE
Q psy12136 211 Y-----------GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTL 266 (399)
Q Consensus 211 ~-----------~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l 266 (399)
. +. ++||++.+++.++.. ....|+.|.+. .......|+|.+++
T Consensus 73 ~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~~-----------~~~~~~~G~i~~~~ 127 (127)
T cd04027 73 DIKSRLKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEKR-----------TDKSAVSGAIRLHI 127 (127)
T ss_pred CcccccceeccccCCCcceEEEEEhHHccC--CCCeEEECccC-----------CCCCcEeEEEEEEC
Confidence 2 34 999999999998753 34578788652 12235689888763
No 138
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.71 E-value=4.4e-17 Score=137.03 Aligned_cols=104 Identities=34% Similarity=0.592 Sum_probs=85.2
Q ss_pred eeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-------------------------ceEeecceeCCCC
Q psy12136 267 CFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-------------------------RKYKTGVKWKTLN 321 (399)
Q Consensus 267 ~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-------------------------~~~kT~v~~~t~n 321 (399)
...|..+.|.|+|++|+||..++..|.+||||+|.+.+...+ ..++|++++++.|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 355678999999999999999999999999999998643211 2478999999999
Q ss_pred ceecceEEEEeccCcccccEEEEEEEeCCCCCCCeeeEEEEEccCCCC-Ccchhhh
Q psy12136 322 PIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG-DRLRHWV 376 (399)
Q Consensus 322 P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~-~~~~~w~ 376 (399)
|.|||+|.|.+. .+....|.|+|||++ +++||++.|++++.. .+.++||
T Consensus 102 P~WnE~F~f~v~--~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~~~d~W~ 151 (153)
T cd08676 102 PVWNETFRFEVE--DVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSCGLDSWF 151 (153)
T ss_pred CccccEEEEEec--cCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCCCCCCeE
Confidence 999999999986 344678999999997 789999999987633 3344444
No 139
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.71 E-value=7.1e-17 Score=129.50 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=84.5
Q ss_pred CCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEece-eCcccCCCceEEEEEE
Q psy12136 128 TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYS-VSETDLSLQSLHILVL 206 (399)
Q Consensus 128 ~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~-v~~~~l~~~~L~~~V~ 206 (399)
+...|+|+|++|++|. .+.+||||+|++. .++++|++++++.||+|||+|.|.. .+..++....|.|+||
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~-----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~ 72 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVG-----GQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVY 72 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEEC-----CEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEE
Confidence 3458999999999998 5679999999996 3678999999999999999999942 2234455678999999
Q ss_pred EcCCCCC-cceeeEEecCcccCCCcce---eEEEeec
Q psy12136 207 DDDKYGH-DFLGEARFPLNRLRPHISR---DLCLNLC 239 (399)
Q Consensus 207 d~~~~~~-~~lG~~~i~l~~l~~~~~~---~~~~~L~ 239 (399)
|++..++ ++||++.++|+++..+..+ ..|++|.
T Consensus 73 d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~ 109 (111)
T cd04011 73 DSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLT 109 (111)
T ss_pred cCcccccCCccEEEEECCccccCCCCCcceEEEEEee
Confidence 9999887 9999999999999766443 4566664
No 140
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.71 E-value=1.3e-16 Score=130.97 Aligned_cols=86 Identities=26% Similarity=0.447 Sum_probs=75.7
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCC
Q psy12136 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 354 (399)
Q Consensus 275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~ 354 (399)
|.|+|++|+||+. ..|.+||||++++... ..+++|++++++.||+|||.|.|.+... ...|.|+|||++..++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~--~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~~~~ 73 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEP--PQKYQSSTQKNTSNPFWDEHFLFELSPN---SKELLFEVYDNGKKSD 73 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCC--CcEEEeEEEecCCCCccCceEEEEeCCC---CCEEEEEEEECCCCCC
Confidence 6799999999987 6789999999998521 2678999999999999999999998532 4689999999999888
Q ss_pred CeeeEEEEEccCC
Q psy12136 355 NDYLGCLELCCNS 367 (399)
Q Consensus 355 d~~lG~~~i~l~~ 367 (399)
+++||++.+++++
T Consensus 74 ~~~lG~~~i~l~~ 86 (126)
T cd08678 74 SKFLGLAIVPFDE 86 (126)
T ss_pred CceEEEEEEeHHH
Confidence 9999999999986
No 141
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.71 E-value=1.3e-16 Score=130.03 Aligned_cols=87 Identities=28% Similarity=0.442 Sum_probs=77.0
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCC
Q psy12136 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 354 (399)
Q Consensus 275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~ 354 (399)
|.|.|++|++|+.++..|.+||||++.+.+ ....+|++++++.||.|||.|.|.+... ...|.|.|||++..++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~---~~~~kT~v~~~t~nP~Wne~f~~~~~~~---~~~l~v~v~d~~~~~~ 75 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDN---EVIIRTATVWKTLNPFWGEEYTVHLPPG---FHTVSFYVLDEDTLSR 75 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEECC---EeeeeeeeEcCCCCCcccceEEEeeCCC---CCEEEEEEEECCCCCC
Confidence 789999999999999999999999999842 2457999999999999999999998632 3689999999999999
Q ss_pred CeeeEEEEEccCC
Q psy12136 355 NDYLGCLELCCNS 367 (399)
Q Consensus 355 d~~lG~~~i~l~~ 367 (399)
+++||++.++++.
T Consensus 76 d~~iG~~~~~~~~ 88 (121)
T cd04054 76 DDVIGKVSLTREV 88 (121)
T ss_pred CCEEEEEEEcHHH
Confidence 9999999999754
No 142
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.71 E-value=1.3e-16 Score=132.35 Aligned_cols=92 Identities=30% Similarity=0.414 Sum_probs=79.7
Q ss_pred eEEEEEEeeecCCCCCCCCCCCcEEEEEEecCC--CC-ceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCC
Q psy12136 274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL--HK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 350 (399)
Q Consensus 274 ~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~--~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~ 350 (399)
.|.|+|++|++|+..+..+.+||||+|++.+.. .. .+++|++++++.||.|||+|.|.+... ...|.|+|||++
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~ 77 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR---EHRLLFEVFDEN 77 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC---CCEEEEEEEECC
Confidence 378999999999999888899999999997541 11 467999999999999999999998642 367999999999
Q ss_pred CCCCCeeeEEEEEccCCC
Q psy12136 351 YGKSNDYLGCLELCCNSK 368 (399)
Q Consensus 351 ~~~~d~~lG~~~i~l~~~ 368 (399)
.++++++||++.+++++.
T Consensus 78 ~~~~~~~iG~~~i~l~~l 95 (133)
T cd04033 78 RLTRDDFLGQVEVPLNNL 95 (133)
T ss_pred CCCCCCeeEEEEEEHHHC
Confidence 998999999999998863
No 143
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.70 E-value=1.1e-16 Score=128.82 Aligned_cols=102 Identities=18% Similarity=0.185 Sum_probs=79.6
Q ss_pred ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCC
Q psy12136 272 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 351 (399)
Q Consensus 272 ~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~ 351 (399)
+++|.|.|++|++|+..+ ..||||++.++ ..+.+|++.++ .||.|||.|.|.+. +. +..|.|+|||++.
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g----~~k~kT~v~~~-~nP~WnE~F~F~~~--~~-~~~L~v~V~dkd~ 69 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQ----NVKSTTIAVRG-SQPCWEQDFMFEIN--RL-DLGLVIELWNKGL 69 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEEC----CEEeEeeECCC-CCCceeeEEEEEEc--CC-CCEEEEEEEeCCC
Confidence 468999999999996533 46899999994 37789999887 59999999999996 33 3459999999997
Q ss_pred CCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136 352 GKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 395 (399)
Q Consensus 352 ~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~ 395 (399)
+ .|++||++.|+|++...+ ......+|++|+++
T Consensus 70 ~-~DD~lG~v~i~L~~v~~~----------~~~~~~~Wy~L~~~ 102 (127)
T cd08394 70 I-WDTLVGTVWIPLSTIRQS----------NEEGPGEWLTLDSE 102 (127)
T ss_pred c-CCCceEEEEEEhHHcccC----------CCCCCCccEecChH
Confidence 6 899999999999874322 11123577777754
No 144
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.70 E-value=1.1e-16 Score=134.37 Aligned_cols=106 Identities=20% Similarity=0.290 Sum_probs=85.3
Q ss_pred EEEEEEeeec--CCCCCCCCCCCcEEEEEEe-cCCCCceEeecceeCCCCceecceEEEEeccC------cccccEEEEE
Q psy12136 275 LIVNLIKCTN--LIPMDSNGFSDPFIKLYLK-PDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT------ELSKQTLVIT 345 (399)
Q Consensus 275 L~v~v~~a~~--L~~~~~~g~~dpyV~v~l~-~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~------~l~~~~l~i~ 345 (399)
..++|..|++ |+..+.++.+||||++++. +..+..+.||+++++|.||+|||+|.|.|... .+....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4556666666 7777778889999999984 33333899999999999999999999999654 2446789999
Q ss_pred EEeCCCC-CCCeeeEEEEEccCCC--CCcchhhhhhhc
Q psy12136 346 VWDKDYG-KSNDYLGCLELCCNSK--GDRLRHWVDMMK 380 (399)
Q Consensus 346 V~d~~~~-~~d~~lG~~~i~l~~~--~~~~~~w~~l~~ 380 (399)
|||++.+ ++|++||++.|+|... .....+|++|+.
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~ 121 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD 121 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh
Confidence 9999875 5799999999999975 456677888773
No 145
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.70 E-value=1.8e-16 Score=130.52 Aligned_cols=89 Identities=29% Similarity=0.442 Sum_probs=79.6
Q ss_pred eeEEEEEEeeecCCCCCC--CCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCC
Q psy12136 273 RALIVNLIKCTNLIPMDS--NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 350 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~--~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~ 350 (399)
|.|.|.|++|+||+..+. .+.+||||++.+. ..+++|++++++.||.|||.|.|.+.. .....|.|+|||++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~----~~~~kT~~~~~t~~P~Wne~f~~~~~~--~~~~~l~i~v~d~~ 74 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG----AQRFKTQTIPNTLNPKWNYWCEFPIFS--AQNQLLKLILWDKD 74 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC----CEEEecceecCCcCCccCCcEEEEecC--CCCCEEEEEEEECC
Confidence 578999999999999888 8899999999984 367899999999999999999999973 34579999999999
Q ss_pred CCCCCeeeEEEEEccCC
Q psy12136 351 YGKSNDYLGCLELCCNS 367 (399)
Q Consensus 351 ~~~~d~~lG~~~i~l~~ 367 (399)
..+.+++||++.|++.+
T Consensus 75 ~~~~~~~lG~~~i~l~~ 91 (128)
T cd04024 75 RFAGKDYLGEFDIALEE 91 (128)
T ss_pred CCCCCCcceEEEEEHHH
Confidence 88889999999999876
No 146
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.69 E-value=1.6e-16 Score=129.16 Aligned_cols=100 Identities=32% Similarity=0.498 Sum_probs=85.2
Q ss_pred eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCC
Q psy12136 273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 352 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~ 352 (399)
|+|.|+|++|++|+..+..+.+||||++++.. ..++|++++++.||.|||+|.|.+. ++ ...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~----~~~~T~~~~~t~nP~W~e~f~~~~~--~~-~~~l~~~v~d~~~~ 73 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN----ARLQTHTIYKTLNPEWNKIFTFPIK--DI-HDVLEVTVYDEDKD 73 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC----EeeecceecCCcCCccCcEEEEEec--Cc-CCEEEEEEEECCCC
Confidence 57899999999999998888999999999853 5679999999999999999999985 32 47899999999988
Q ss_pred CCCeeeEEEEEccCCCCCcchhhhhhh
Q psy12136 353 KSNDYLGCLELCCNSKGDRLRHWVDMM 379 (399)
Q Consensus 353 ~~d~~lG~~~i~l~~~~~~~~~w~~l~ 379 (399)
+++++||++.+++.....+..+|+.|.
T Consensus 74 ~~~~~iG~~~~~l~~~~~~~~~~~~l~ 100 (119)
T cd08377 74 KKPEFLGKVAIPLLSIKNGERKWYALK 100 (119)
T ss_pred CCCceeeEEEEEHHHCCCCCceEEECc
Confidence 889999999999877554455565554
No 147
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.69 E-value=1.1e-15 Score=157.81 Aligned_cols=223 Identities=23% Similarity=0.354 Sum_probs=164.7
Q ss_pred CEEEEEEEEecCCCCCC--CCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEE
Q psy12136 130 CSLHVTLHRAKGLRAMD--IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLD 207 (399)
Q Consensus 130 ~~L~V~V~~a~~L~~~~--~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d 207 (399)
+.|.|+|.+|++|...+ .++..|||+.+.... ....||++++++.||+|||+|... .+.+ ...|.++|||
T Consensus 436 GVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~----r~~gkT~v~~nt~nPvwNEt~Yi~---lns~-~d~L~LslyD 507 (1227)
T COG5038 436 GVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSD----RVIGKTRVKKNTLNPVWNETFYIL---LNSF-TDPLNLSLYD 507 (1227)
T ss_pred EEEEEEEeeccCcccccccccCCCCceEEEEecc----ccCCccceeeccCCccccceEEEE---eccc-CCceeEEEEe
Confidence 68999999999999988 578999999999752 334599999999999999999762 3333 4789999999
Q ss_pred cCCCCC-cceeeEEecCcccCCCcceeE---------------EEeecccCCCC-Cccccc------cc-----------
Q psy12136 208 DDKYGH-DFLGEARFPLNRLRPHISRDL---------------CLNLCKHYPVP-REEEVW------GE----------- 253 (399)
Q Consensus 208 ~~~~~~-~~lG~~~i~l~~l~~~~~~~~---------------~~~L~~~~~~~-~~~~~~------~~----------- 253 (399)
.+.... .++|.+.++|+.|.....+.. .++++ +++.- +..... ++
T Consensus 508 ~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vGrL~yDl~-ffp~~e~k~~~~~s~e~~ed~n~GI~k~tl~ 586 (1227)
T COG5038 508 FNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLR-FFPVIEDKKELKGSVEPLEDSNTGILKVTLR 586 (1227)
T ss_pred ccccCCcceeeeEEechHHhhhccccccceeeeeccCccceEEEEeee-eecccCCccccccccCCcccCCcceeEEEee
Confidence 877766 999999999998875432211 11111 11100 000000 00
Q ss_pred --------------------------------------------------------------------------------
Q psy12136 254 -------------------------------------------------------------------------------- 253 (399)
Q Consensus 254 -------------------------------------------------------------------------------- 253 (399)
T Consensus 587 ~~~~l~~~~~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~~g~~i~~~~~~l~~li 666 (1227)
T COG5038 587 EVKALDELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQSGKVIATEGSTLPDLI 666 (1227)
T ss_pred ccccccCccccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccccCceeccccccchHhh
Confidence
Q ss_pred ----------cccccceeEEEEEeeec---------------cceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC
Q psy12136 254 ----------EECWQHGKIFLTLCFST---------------KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK 308 (399)
Q Consensus 254 ----------~~~~~~G~l~l~l~~~~---------------~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~ 308 (399)
......|+|.++.++.| ..+.++|.|..|.+|......+.+|||.+|.+.+ .
T Consensus 667 ~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n~---~ 743 (1227)
T COG5038 667 DRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVNN---L 743 (1227)
T ss_pred hccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcccccceEEEecc---e
Confidence 00122455555544333 2588999999999999888899999999999852 3
Q ss_pred ceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCCCeeeEEEEEccCC
Q psy12136 309 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS 367 (399)
Q Consensus 309 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~ 367 (399)
.+++|-....+.||.||+...-.+... ...|.+.++|....+.|..||++.|.+..
T Consensus 744 ~k~rti~~~~~~npiw~~i~Yv~v~sk---~~r~~l~~~~~~~sgddr~lg~~~i~vsn 799 (1227)
T COG5038 744 VKYRTIYGSSTLNPIWNEILYVPVTSK---NQRLTLECMDYEESGDDRNLGEVNINVSN 799 (1227)
T ss_pred eEEEEecccCccccceeeeEEEEecCC---ccEEeeeeecchhccccceeceeeeeeee
Confidence 899999999999999999887777532 35688999999988999999999999775
No 148
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.69 E-value=6.3e-16 Score=127.89 Aligned_cols=119 Identities=24% Similarity=0.368 Sum_probs=92.0
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCC--------CceEecccccCCCCCee-cceEEeceeCcccCCCceE
Q psy12136 131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKT--------SHRLRTKTCLRTINPEF-HEKLTFYSVSETDLSLQSL 201 (399)
Q Consensus 131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~--------~~~~rT~~~~~t~nP~w-ne~f~f~~v~~~~l~~~~L 201 (399)
.+.|.+++|+||. ++..|.+||||++++.+++.. .+++||+++++++||+| ||.|.| .+.. ...|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f-~v~~----~~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVF-VGLP----TDVL 75 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEE-EcCC----CCEE
Confidence 4689999999998 677899999999999875543 35899999999999999 999999 4543 3579
Q ss_pred EEEEEEcCCCC----CcceeeEEecCcccCCCc---ceeEEEeecccCCCCCccccccccccccceeEEEEE
Q psy12136 202 HILVLDDDKYG----HDFLGEARFPLNRLRPHI---SRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTL 266 (399)
Q Consensus 202 ~~~V~d~~~~~----~~~lG~~~i~l~~l~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l 266 (399)
.|+|||++..+ +++||++.+++.++.... ....|++|++.. ......|+|.+.+
T Consensus 76 ~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~-----------~~s~v~G~~~l~~ 136 (137)
T cd08691 76 EIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT-----------PTDHVSGQLTFRF 136 (137)
T ss_pred EEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC-----------CCCcEEEEEEEEe
Confidence 99999986542 489999999999987553 244566665421 1235678887764
No 149
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.69 E-value=1.6e-16 Score=133.73 Aligned_cols=107 Identities=36% Similarity=0.576 Sum_probs=86.6
Q ss_pred EeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCC------------------------CceEecccccCCCCC
Q psy12136 125 YDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKT------------------------SHRLRTKTCLRTINP 180 (399)
Q Consensus 125 y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~------------------------~~~~rT~~~~~t~nP 180 (399)
+.+....|.|+|++|++|.+.+..|.+||||+|.+.+.... ...++|++++++.||
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 102 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP 102 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence 34456789999999999999999999999999999753211 135899999999999
Q ss_pred eecceEEeceeCcccCCCceEEEEEEEcCCCCCcceeeEEecCcccCCCcceeEEEee
Q psy12136 181 EFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNL 238 (399)
Q Consensus 181 ~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L 238 (399)
+|||+|.|. +. .+....|.|+|||++ +++||++.+++.++.. .....|+.|
T Consensus 103 ~WnE~F~f~-v~--~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 103 VWNETFRFE-VE--DVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred ccccEEEEE-ec--cCCCCEEEEEEEecC---CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 999999993 43 234578999999998 6899999999999983 345666654
No 150
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.69 E-value=3.3e-16 Score=130.97 Aligned_cols=111 Identities=27% Similarity=0.284 Sum_probs=89.9
Q ss_pred eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCC
Q psy12136 273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 352 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~ 352 (399)
|.|.|+|++|+||+..+. +.+||||+++++ ..+++|++++++.||+|||+|.|.+... ...|.|+|||++.+
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g----~~~~kT~vvk~t~nP~WnE~f~f~i~~~---~~~l~~~V~D~d~~ 73 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLG----NQKVKTRVIKKNLNPVWNEELTLSVPNP---MAPLKLEVFDKDTF 73 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEEC----CEEEEeeeEcCCCCCeecccEEEEecCC---CCEEEEEEEECCCC
Confidence 679999999999998887 789999999994 3789999999999999999999999632 57899999999999
Q ss_pred CCCeeeEEEEEccCCCC-CcchhhhhhhcCCCCceeeEEeC
Q psy12136 353 KSNDYLGCLELCCNSKG-DRLRHWVDMMKYPDHKHEGIHNL 392 (399)
Q Consensus 353 ~~d~~lG~~~i~l~~~~-~~~~~w~~l~~~p~~~~~~Wh~L 392 (399)
++|++||++.+++...- ....+|..-+ ..+..+.+|.+-
T Consensus 74 ~~dd~iG~a~i~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~ 113 (145)
T cd04038 74 SKDDSMGEAEIDLEPLVEAAKLDHLRDT-PGGTQIKKVLPS 113 (145)
T ss_pred CCCCEEEEEEEEHHHhhhhhhhhccccC-CCCEEEEEEecC
Confidence 99999999999988643 2222333222 235567788764
No 151
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.68 E-value=2.1e-16 Score=134.53 Aligned_cols=104 Identities=25% Similarity=0.343 Sum_probs=84.6
Q ss_pred eeEEEEEEeeecCCCCC------------------------------CCCCCCcEEEEEEecCCCCceEeecceeCCCCc
Q psy12136 273 RALIVNLIKCTNLIPMD------------------------------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNP 322 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~------------------------------~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP 322 (399)
|.|.|+|++|++|+.+| ..|.+||||+|.+.+ .+..+|++++++.||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~---~~~~rT~v~~~~~nP 83 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG---ARVARTRVIENSENP 83 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC---eEeeEEEEeCCCCCC
Confidence 78999999999999887 356789999999952 255799999999999
Q ss_pred eecceEEEEeccCcccccEEEEEEEeCCCCCCCeeeEEEEEccCC--CCCcchhhhhhhcCCC
Q psy12136 323 IFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS--KGDRLRHWVDMMKYPD 383 (399)
Q Consensus 323 ~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~--~~~~~~~w~~l~~~p~ 383 (399)
+|||+|.|.+.. . ...|.|.|||++..+ +++||++.|+++. .+...++|++|....+
T Consensus 84 ~WnE~F~~~~~~--~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~ 142 (158)
T cd04015 84 VWNESFHIYCAH--Y-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNG 142 (158)
T ss_pred ccceEEEEEccC--C-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCC
Confidence 999999998852 2 357999999999875 6899999999886 3445666777665433
No 152
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.68 E-value=6.8e-16 Score=125.02 Aligned_cols=115 Identities=24% Similarity=0.392 Sum_probs=88.7
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 211 (399)
Q Consensus 132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~ 211 (399)
|.|+|++|++|+.. +.+||||+|++.. ...++|+++++ .||+|||+|.| .+...++....|.|.+||.+..
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~----~~~~kT~~~~~-~~P~Wne~f~f-~v~~~~~~~~~l~i~v~d~~~~ 72 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQ----VEVARTKTVEK-LNPFWGEEFVF-DDPPPDVTFFTLSFYNKDKRSK 72 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECC----EEeEecceEEC-CCCcccceEEE-ecCCccccEEEEEEEEEecccC
Confidence 78999999999986 7899999999952 34579999988 99999999999 5776666567888999998876
Q ss_pred CC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136 212 GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 268 (399)
Q Consensus 212 ~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~ 268 (399)
.+ .++|.+.+ ..+..+.....|++|.+... .....|+|++.+.|
T Consensus 73 ~~~~~~g~v~l--~~~~~~~~~~~w~~L~~~~~-----------~~~~~G~l~l~~~~ 117 (117)
T cd08383 73 DRDIVIGKVAL--SKLDLGQGKDEWFPLTPVDP-----------DSEVQGSVRLRARY 117 (117)
T ss_pred CCeeEEEEEEe--cCcCCCCcceeEEECccCCC-----------CCCcCceEEEEEEC
Confidence 55 66776555 44554666678888864211 13568999998876
No 153
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.68 E-value=3.7e-16 Score=125.70 Aligned_cols=97 Identities=20% Similarity=0.231 Sum_probs=78.2
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136 130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 209 (399)
Q Consensus 130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~ 209 (399)
+.|.|+|++||+|+..+ ..||||+|.+. .++.+|++.++ .||+|||.|.| .+.. . ...|.|+|||++
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g-----~~k~kT~v~~~-~nP~WnE~F~F-~~~~--~-~~~L~v~V~dkd 68 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQ-----NVKSTTIAVRG-SQPCWEQDFMF-EINR--L-DLGLVIELWNKG 68 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEEC-----CEEeEeeECCC-CCCceeeEEEE-EEcC--C-CCEEEEEEEeCC
Confidence 47999999999997644 46999999994 47889999877 59999999999 3532 3 345999999999
Q ss_pred CCCCcceeeEEecCcccCCCcce--eEEEeec
Q psy12136 210 KYGHDFLGEARFPLNRLRPHISR--DLCLNLC 239 (399)
Q Consensus 210 ~~~~~~lG~~~i~l~~l~~~~~~--~~~~~L~ 239 (399)
..++++||++.|+|.++..+... ..|++|+
T Consensus 69 ~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~ 100 (127)
T cd08394 69 LIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLD 100 (127)
T ss_pred CcCCCceEEEEEEhHHcccCCCCCCCccEecC
Confidence 87669999999999998866443 5566665
No 154
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.68 E-value=2.5e-16 Score=132.30 Aligned_cols=93 Identities=23% Similarity=0.377 Sum_probs=78.2
Q ss_pred EEEEEEEEecCCCCCCCCC--------------CCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccC
Q psy12136 131 SLHVTLHRAKGLRAMDIHG--------------TSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL 196 (399)
Q Consensus 131 ~L~V~V~~a~~L~~~~~~~--------------~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l 196 (399)
+|.|+|++|++|+.++..+ .+||||+|.+. .++.||++++++.||+|||+|.|. +.....
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~-----g~~~kT~v~~~t~nPvWNE~f~f~-v~~p~~ 74 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA-----GQKVKTSVKKNSYNPEWNEQIVFP-EMFPPL 74 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC-----CEeeecceEcCCCCCCcceEEEEE-eeCCCc
Confidence 4789999999999988543 68999999995 357799999999999999999994 432222
Q ss_pred CCceEEEEEEEcCCCCC-cceeeEEecCcccCCCc
Q psy12136 197 SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI 230 (399)
Q Consensus 197 ~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~ 230 (399)
...|.|+|||++..++ ++||++.++|.++....
T Consensus 75 -~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 75 -CERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred -CCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCC
Confidence 3689999999999877 99999999999987643
No 155
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.68 E-value=2.8e-16 Score=129.17 Aligned_cols=102 Identities=26% Similarity=0.519 Sum_probs=84.0
Q ss_pred eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCC
Q psy12136 273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 352 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~ 352 (399)
.+|.|+|++|++|+..+..+.+||||+|++. ..+++|+++.++.||.|||+|.|.+... ...|.|+|||++..
T Consensus 1 ~~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~----~~~~kT~~v~~t~~P~Wne~f~f~~~~~---~~~l~i~v~d~d~~ 73 (127)
T cd04027 1 AKISITVVCAQGLIAKDKTGTSDPYVTVQVG----KTKKRTKTIPQNLNPVWNEKFHFECHNS---SDRIKVRVWDEDDD 73 (127)
T ss_pred CeEEEEEEECcCCcCCCCCCCcCcEEEEEEC----CEeeecceecCCCCCccceEEEEEecCC---CCEEEEEEEECCCC
Confidence 3689999999999999988999999999984 2678999999999999999999988522 35899999999852
Q ss_pred -----------CCCeeeEEEEEccCCCCCcchhhhhhhcC
Q psy12136 353 -----------KSNDYLGCLELCCNSKGDRLRHWVDMMKY 381 (399)
Q Consensus 353 -----------~~d~~lG~~~i~l~~~~~~~~~w~~l~~~ 381 (399)
+.+++||++.+++.+......+|+.|...
T Consensus 74 ~~~~~~~~~~~~~~~~iG~~~i~l~~~~~~~~~w~~L~~~ 113 (127)
T cd04027 74 IKSRLKQKFTRESDDFLGQTIIEVRTLSGEMDVWYNLEKR 113 (127)
T ss_pred cccccceeccccCCCcceEEEEEhHHccCCCCeEEECccC
Confidence 46899999999988765555556555533
No 156
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.68 E-value=3.9e-16 Score=127.29 Aligned_cols=93 Identities=25% Similarity=0.411 Sum_probs=79.3
Q ss_pred cceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCC
Q psy12136 271 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 350 (399)
Q Consensus 271 ~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~ 350 (399)
..++|.|+|++|++|+. +..+.+||||+|++.+ .+++|++++++.||+|||+|.|..... .....|.|+|||++
T Consensus 26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~----~~~kT~vi~~t~nPvWNE~F~f~~~~~-~~~~~L~v~V~D~d 99 (127)
T cd04032 26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG----QEKRTEVIWNNNNPRWNATFDFGSVEL-SPGGKLRFEVWDRD 99 (127)
T ss_pred CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC----ccccCceecCCCCCcCCCEEEEecccC-CCCCEEEEEEEeCC
Confidence 45889999999999974 6678899999999853 589999999999999999999974321 13578999999999
Q ss_pred CCCCCeeeEEEEEccCCCC
Q psy12136 351 YGKSNDYLGCLELCCNSKG 369 (399)
Q Consensus 351 ~~~~d~~lG~~~i~l~~~~ 369 (399)
..+++++||++.+++.+..
T Consensus 100 ~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 100 NGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCCCeeEEEEEEecCCc
Confidence 9989999999999998643
No 157
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.67 E-value=2.9e-16 Score=127.98 Aligned_cols=89 Identities=28% Similarity=0.488 Sum_probs=77.3
Q ss_pred eeEEEEEEeeecCCCCCC------CCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEE
Q psy12136 273 RALIVNLIKCTNLIPMDS------NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITV 346 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~------~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V 346 (399)
|.|.|.|++|+||+..+. .+.+||||++++.+ ..++|++++++.||.|||.|.|.+.. .....|.|+|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~----~~~kT~~~~~t~~P~W~e~f~~~v~~--~~~~~l~i~v 74 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA----QTFKSKVIKENLNPKWNEVYEAVVDE--VPGQELEIEL 74 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC----EeEEccccCCCCCCcccceEEEEeCC--CCCCEEEEEE
Confidence 468999999999998764 36899999999953 78999999999999999999999863 3457899999
Q ss_pred EeCCCCCCCeeeEEEEEccCCC
Q psy12136 347 WDKDYGKSNDYLGCLELCCNSK 368 (399)
Q Consensus 347 ~d~~~~~~d~~lG~~~i~l~~~ 368 (399)
||++.. ++++||++.+++.+.
T Consensus 75 ~d~~~~-~~~~iG~~~i~l~~l 95 (121)
T cd08391 75 FDEDPD-KDDFLGRLSIDLGSV 95 (121)
T ss_pred EecCCC-CCCcEEEEEEEHHHh
Confidence 999987 889999999998763
No 158
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.67 E-value=7.7e-16 Score=126.29 Aligned_cols=98 Identities=16% Similarity=0.332 Sum_probs=76.7
Q ss_pred eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCC
Q psy12136 273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 352 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~ 352 (399)
..|.|+|++|+||+.. +.+||||+|.+.+ .+..+|+++ ++.||.|||.|.|.+...++ ..|.|.|||++..
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~---~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~--~~l~v~v~d~~~~ 74 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNE---VKVARTKVR-EGPNPVWSEEFVFDDLPPDV--NSFTISLSNKAKR 74 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECC---EeEEEeecC-CCCCCccCCEEEEecCCCCc--CEEEEEEEECCCC
Confidence 4699999999999864 4789999999942 255788874 58999999999998754332 4789999999999
Q ss_pred CCCeeeEEEEEccCCCC--Ccchhhhhhh
Q psy12136 353 KSNDYLGCLELCCNSKG--DRLRHWVDMM 379 (399)
Q Consensus 353 ~~d~~lG~~~i~l~~~~--~~~~~w~~l~ 379 (399)
+++++||++.|++.... ...++|+.|.
T Consensus 75 ~~d~~iG~v~i~l~~l~~~~~~~~W~~L~ 103 (126)
T cd08400 75 SKDSEIAEVTVQLSKLQNGQETDEWYPLS 103 (126)
T ss_pred CCCCeEEEEEEEHhHccCCCcccEeEEcc
Confidence 99999999999988633 3334444443
No 159
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.67 E-value=1.3e-15 Score=125.15 Aligned_cols=91 Identities=30% Similarity=0.500 Sum_probs=79.5
Q ss_pred eEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCC
Q psy12136 274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 353 (399)
Q Consensus 274 ~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~ 353 (399)
.|+|+|++|++|+..+..+.+||||++.+.+. ....++|++++++.||.|||+|.|.+... ....|.|+|||++..+
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~-~~~~~kT~~~~~t~~P~Wne~f~f~i~~~--~~~~L~i~v~d~d~~~ 78 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNG-KRRIAKTRTIYDTLNPRWDEEFELEVPAG--EPLWISATVWDRSFVG 78 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCC-CeeeecccEecCCCCCcccceEEEEcCCC--CCCEEEEEEEECCCCC
Confidence 68999999999999988999999999987532 13678999999999999999999998743 3468999999999888
Q ss_pred CCeeeEEEEEccCC
Q psy12136 354 SNDYLGCLELCCNS 367 (399)
Q Consensus 354 ~d~~lG~~~i~l~~ 367 (399)
++++||++.+++..
T Consensus 79 ~~~~iG~~~i~l~~ 92 (126)
T cd04043 79 KHDLCGRASLKLDP 92 (126)
T ss_pred CCceEEEEEEecCH
Confidence 89999999999875
No 160
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=6.2e-16 Score=125.64 Aligned_cols=112 Identities=17% Similarity=0.237 Sum_probs=91.2
Q ss_pred eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCC
Q psy12136 273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 352 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~ 352 (399)
|.|.|+|++|++|+..+..+.+||||+|.+.+ ..+++|+++.++.||.|||.|.|.+... ...|.|+|||++..
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~---~~~~kT~~~~~t~~P~Wne~f~~~v~~~---~~~L~v~v~d~~~~ 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNG---IVKGRTVTISNTLNPVWDEVLYVPVTSP---NQKITLEVMDYEKV 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECC---EEeeceeEECCCcCCccCceEEEEecCC---CCEEEEEEEECCCC
Confidence 46889999999999988889999999999842 2678999999999999999999988633 36899999999999
Q ss_pred CCCeeeEEEEEccCCC-CCcchhhhhhhcCCCCceeeEE
Q psy12136 353 KSNDYLGCLELCCNSK-GDRLRHWVDMMKYPDHKHEGIH 390 (399)
Q Consensus 353 ~~d~~lG~~~i~l~~~-~~~~~~w~~l~~~p~~~~~~Wh 390 (399)
+++++||++.+++.+. ....+.||.+++.......+-.
T Consensus 75 ~~d~~IG~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (120)
T cd04045 75 GKDRSLGSVEINVSDLIKKNEDGKYVEYDDEEERLKRLL 113 (120)
T ss_pred CCCCeeeEEEEeHHHhhCCCCCceEEecCCCcceeeEee
Confidence 8999999999998863 3456667777766543333333
No 161
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.67 E-value=9.2e-16 Score=128.28 Aligned_cols=91 Identities=31% Similarity=0.525 Sum_probs=80.2
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136 130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 209 (399)
Q Consensus 130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~ 209 (399)
+.|.|+|++|+||+..+. +.+||||+|.+. .++++|++++++.||+|||+|.| .++.. ...|.|+|||++
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g-----~~~~kT~vvk~t~nP~WnE~f~f-~i~~~---~~~l~~~V~D~d 71 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLG-----NQKVKTRVIKKNLNPVWNEELTL-SVPNP---MAPLKLEVFDKD 71 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEEC-----CEEEEeeeEcCCCCCeecccEEE-EecCC---CCEEEEEEEECC
Confidence 579999999999999887 889999999994 47899999999999999999999 45433 578999999999
Q ss_pred CCCC-cceeeEEecCcccCCCc
Q psy12136 210 KYGH-DFLGEARFPLNRLRPHI 230 (399)
Q Consensus 210 ~~~~-~~lG~~~i~l~~l~~~~ 230 (399)
.+++ ++||++.+++.++....
T Consensus 72 ~~~~dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 72 TFSKDDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCCCCCEEEEEEEEHHHhhhhh
Confidence 9988 99999999999987543
No 162
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.67 E-value=5.4e-16 Score=126.44 Aligned_cols=91 Identities=26% Similarity=0.304 Sum_probs=76.6
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136 129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 208 (399)
Q Consensus 129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~ 208 (399)
.++|.|+|++|++|+. +..+.+||||+|++. ..++||++++++.||+|||+|.|...... ....|.|+|||+
T Consensus 27 ~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~-----~~~~kT~vi~~t~nPvWNE~F~f~~~~~~--~~~~L~v~V~D~ 98 (127)
T cd04032 27 LATLTVTVLRATGLWG-DYFTSTDGYVKVFFG-----GQEKRTEVIWNNNNPRWNATFDFGSVELS--PGGKLRFEVWDR 98 (127)
T ss_pred cEEEEEEEEECCCCCc-CcCCCCCeEEEEEEC-----CccccCceecCCCCCcCCCEEEEecccCC--CCCEEEEEEEeC
Confidence 3579999999999985 566789999999994 35889999999999999999999422222 357899999999
Q ss_pred CCCCC-cceeeEEecCcccC
Q psy12136 209 DKYGH-DFLGEARFPLNRLR 227 (399)
Q Consensus 209 ~~~~~-~~lG~~~i~l~~l~ 227 (399)
+..++ ++||++.++|....
T Consensus 99 d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 99 DNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCCCCeeEEEEEEecCCc
Confidence 99977 99999999998654
No 163
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.66 E-value=1e-15 Score=123.64 Aligned_cols=102 Identities=34% Similarity=0.483 Sum_probs=88.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 211 (399)
Q Consensus 132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~ 211 (399)
|+|+|++|++|+..+..+.+||||+|.+.+ ...++|+++.++.||+|||+|.| .+... ....|.|+|||++..
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~----~~~~~T~v~~~~~~P~Wne~f~~-~~~~~--~~~~l~~~v~d~~~~ 73 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNG----EKVFKTKTIKKTLNPVWNESFEV-PVPSR--VRAVLKVEVYDWDRG 73 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECC----CcceeeceecCCCCCcccccEEE-EeccC--CCCEEEEEEEeCCCC
Confidence 579999999999998888899999999953 35689999999999999999999 45432 357899999999988
Q ss_pred CC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136 212 GH-DFLGEARFPLNRLRPHISRDLCLNLCK 240 (399)
Q Consensus 212 ~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~ 240 (399)
++ ++||++.+++.++..+.....|++|..
T Consensus 74 ~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~ 103 (115)
T cd04040 74 GKDDLLGSAYIDLSDLEPEETTELTLPLDG 103 (115)
T ss_pred CCCCceEEEEEEHHHcCCCCcEEEEEECcC
Confidence 77 999999999999988877888888864
No 164
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.66 E-value=8e-16 Score=125.98 Aligned_cols=105 Identities=29% Similarity=0.424 Sum_probs=88.1
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccC-CCCCeecceEEeceeCcccC-CCceEEEEEEE
Q psy12136 130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR-TINPEFHEKLTFYSVSETDL-SLQSLHILVLD 207 (399)
Q Consensus 130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~-t~nP~wne~f~f~~v~~~~l-~~~~L~~~V~d 207 (399)
+.|.|+|++|++|+..+..+.+||||+|.+. ...++|+++++ +.||+|||.|.| .+..... ....|.|+|||
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~-----~~~~~T~~~~~~t~nP~Wne~f~f-~v~~~~~~~~~~l~v~V~d 74 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR-----TQERKSKVAKGDGRNPEWNEKFKF-TVEYPGWGGDTKLILRIMD 74 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEEC-----CEeeeeeEcCCCCCCCcccceEEE-EecCcccCCCCEEEEEEEE
Confidence 5799999999999998888899999999984 35678888774 899999999999 4654422 24689999999
Q ss_pred cCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136 208 DDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK 240 (399)
Q Consensus 208 ~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~ 240 (399)
++..+. ++||++.++|.++..+.....|+.|..
T Consensus 75 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 75 KDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CccCCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 998877 999999999999987777777777764
No 165
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.66 E-value=6e-16 Score=125.94 Aligned_cols=102 Identities=26% Similarity=0.311 Sum_probs=85.4
Q ss_pred EEEEecCCCCCCCCCCCCcEEEEEEecCC--CCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCC--
Q psy12136 135 TLHRAKGLRAMDIHGTSDPFCKLNLVPLT--KTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK-- 210 (399)
Q Consensus 135 ~V~~a~~L~~~~~~~~~dpyv~v~l~~~~--~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~-- 210 (399)
..++|++|+..+..+.+||||+|++.+.. .....+||++++++.||+|||+|.|. +.... ...|.|+|||++.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~-~~~~~--~~~l~~~V~d~d~~~ 81 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVD-YYFEE--VQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEE-EEeEe--eeEEEEEEEEecCCc
Confidence 46899999999988999999999998643 23346899999999999999999993 44333 3679999999997
Q ss_pred --CCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136 211 --YGH-DFLGEARFPLNRLRPHISRDLCLNLC 239 (399)
Q Consensus 211 --~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~ 239 (399)
.++ ++||++.+++.++........++.|.
T Consensus 82 ~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~ 113 (120)
T cd04048 82 KDLSDHDFLGEAECTLGEIVSSPGQKLTLPLK 113 (120)
T ss_pred CCCCCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence 666 99999999999999877777888773
No 166
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.66 E-value=9e-16 Score=125.67 Aligned_cols=91 Identities=24% Similarity=0.357 Sum_probs=78.1
Q ss_pred eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeC-CCCceecceEEEEeccCcc-cccEEEEEEEeCC
Q psy12136 273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWK-TLNPIFNEEFAIETKITEL-SKQTLVITVWDKD 350 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l-~~~~l~i~V~d~~ 350 (399)
|.|.|+|++|++|+..+..+.+||||++++.+ ..++|++..+ +.||.|||+|.|.+..... ....|.|+|||++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~----~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~ 76 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT----QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKD 76 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECC----EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECc
Confidence 57899999999999888888999999999842 5678888774 8999999999999975422 2468999999999
Q ss_pred CCCCCeeeEEEEEccCC
Q psy12136 351 YGKSNDYLGCLELCCNS 367 (399)
Q Consensus 351 ~~~~d~~lG~~~i~l~~ 367 (399)
.++++++||++.|++.+
T Consensus 77 ~~~~d~~iG~~~i~l~~ 93 (124)
T cd04049 77 NFSDDDFIGEATIHLKG 93 (124)
T ss_pred cCCCCCeEEEEEEEhHH
Confidence 88889999999999876
No 167
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.65 E-value=1.1e-15 Score=125.38 Aligned_cols=105 Identities=28% Similarity=0.388 Sum_probs=86.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEeccccc-CCCCCeecceEEeceeCcccC--CCceEEEEEEE
Q psy12136 131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL-RTINPEFHEKLTFYSVSETDL--SLQSLHILVLD 207 (399)
Q Consensus 131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~-~t~nP~wne~f~f~~v~~~~l--~~~~L~~~V~d 207 (399)
.|+|+|++|++|+..+..+.+||||+|++.+ ..+++|+++. ++.||+|||.|.| .+....+ ....|.|+|||
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~----~~~~~T~~~~~~~~~P~Wne~f~f-~v~~~~~~~~~~~l~~~v~d 75 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP----SHKQSTPVDRDGGTNPTWNETLRF-PLDERLLQQGRLALTIEVYC 75 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC----CcccccccccCCCCCCCCCCEEEE-EcChHhcccCccEEEEEEEE
Confidence 3899999999999998889999999999963 3678899875 5899999999999 5665532 24789999999
Q ss_pred cCCCCC-cceeeEEecCcccCCCcc-----eeEEEeecc
Q psy12136 208 DDKYGH-DFLGEARFPLNRLRPHIS-----RDLCLNLCK 240 (399)
Q Consensus 208 ~~~~~~-~~lG~~~i~l~~l~~~~~-----~~~~~~L~~ 240 (399)
++..+. ++||++.++|.++..... +..|+.|..
T Consensus 76 ~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~ 114 (125)
T cd04051 76 ERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRR 114 (125)
T ss_pred CCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeEC
Confidence 998776 999999999999986654 356777764
No 168
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.65 E-value=2.2e-15 Score=125.31 Aligned_cols=126 Identities=16% Similarity=0.226 Sum_probs=95.4
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136 130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 209 (399)
Q Consensus 130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~ 209 (399)
+.|.|.|++|++|++++ +|||.|.|. +....||+++.++.||.|+|.|.|...+. ...|.|.||..+
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld----~~~vaRT~v~~~~~nP~W~E~F~f~~~~~----~~~l~v~v~k~~ 77 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLD----KTLYARTTSKLKTDTLFWGEHFEFSNLPP----VSVITVNLYRES 77 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEEC----CEEEEEEEEEcCCCCCcceeeEEecCCCc----ccEEEEEEEEcc
Confidence 57999999999999875 899999995 23457999999999999999999952222 267999998654
Q ss_pred C-C----CCcceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeecc
Q psy12136 210 K-Y----GHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTK 271 (399)
Q Consensus 210 ~-~----~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~~ 271 (399)
. . ++.+||.+.||+.++..+...+.|++|......+... +.......+.|+++++|.+.
T Consensus 78 ~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~---~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 78 DKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSG---GKEGKGESPSIRIKARYQST 141 (146)
T ss_pred CccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccc---cccccCCCCEEEEEEEEEEe
Confidence 2 2 2389999999999999888888999997643322100 11112456899999999763
No 169
>KOG1011|consensus
Probab=99.65 E-value=4.3e-15 Score=144.06 Aligned_cols=100 Identities=30% Similarity=0.484 Sum_probs=82.7
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136 130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 209 (399)
Q Consensus 130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~ 209 (399)
..+.++|+.|.+|.++|..|.+||||.+.++ ..++||+++...+||+|||.|.|. .... ...+.+.|||.|
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~-----ktkrrtrti~~~lnpvw~ekfhfe-chns---tdrikvrvwded 365 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVG-----KTKRRTRTIHQELNPVWNEKFHFE-CHNS---TDRIKVRVWDED 365 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeec-----ccchhhHhhhhccchhhhhheeee-ecCC---CceeEEEEecCc
Confidence 5789999999999999999999999999994 578899999999999999999993 3332 468999999987
Q ss_pred CC------------CCcceeeEEecCcccCCCcceeEEEeecc
Q psy12136 210 KY------------GHDFLGEARFPLNRLRPHISRDLCLNLCK 240 (399)
Q Consensus 210 ~~------------~~~~lG~~~i~l~~l~~~~~~~~~~~L~~ 240 (399)
.. +++|+|+..|.+..|... .+.|+.|++
T Consensus 366 ~dlksklrqkl~resddflgqtvievrtlsge--mdvwynlek 406 (1283)
T KOG1011|consen 366 NDLKSKLRQKLTRESDDFLGQTVIEVRTLSGE--MDVWYNLEK 406 (1283)
T ss_pred ccHHHHHHHHhhhcccccccceeEEEEecccc--hhhhcchhh
Confidence 32 348999999999888643 445666654
No 170
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.65 E-value=1.3e-15 Score=124.36 Aligned_cols=88 Identities=25% Similarity=0.417 Sum_probs=77.7
Q ss_pred eEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCC
Q psy12136 274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 353 (399)
Q Consensus 274 ~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~ 353 (399)
.|+|+|++|++|+..+..+.+||||++++.+ ...++|++++++.||.|||+|.|.+.. ...|.|+|||++.++
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~---~~~~kT~v~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~~~ 73 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDG---GQTHSTDVAKKTLDPKWNEHFDLTVGP----SSIITIQVFDQKKFK 73 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEECC---ccceEccEEcCCCCCcccceEEEEeCC----CCEEEEEEEECCCCC
Confidence 3789999999999998889999999999942 377899999999999999999999963 478999999999876
Q ss_pred C--CeeeEEEEEccCCC
Q psy12136 354 S--NDYLGCLELCCNSK 368 (399)
Q Consensus 354 ~--d~~lG~~~i~l~~~ 368 (399)
. +++||++.+++++.
T Consensus 74 ~~~d~~lG~~~i~l~~l 90 (123)
T cd08382 74 KKDQGFLGCVRIRANAV 90 (123)
T ss_pred CCCCceEeEEEEEHHHc
Confidence 5 57999999998873
No 171
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.65 E-value=1e-15 Score=125.62 Aligned_cols=99 Identities=19% Similarity=0.327 Sum_probs=83.5
Q ss_pred eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCC
Q psy12136 273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 352 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~ 352 (399)
..|+|+|++|++|...+..|.+||||++.+.+ .+++|++++++.||+|||.|.|.+... ...|.|+|||++..
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~----~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~i~V~d~~~~ 75 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG----ESVRSPVQKDTLSPEFDTQAIFYRKKP---RSPIKIQVWNSNLL 75 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEECC----EEEEeCccCCCCCCcccceEEEEecCC---CCEEEEEEEECCCC
Confidence 57899999999999988889999999999843 678999999999999999999987532 57899999999987
Q ss_pred CCCeeeEEEEEccCCCCCcchhhhhhh
Q psy12136 353 KSNDYLGCLELCCNSKGDRLRHWVDMM 379 (399)
Q Consensus 353 ~~d~~lG~~~i~l~~~~~~~~~w~~l~ 379 (399)
+ +++||++.+.+++......+|+.|.
T Consensus 76 ~-d~~lG~~~~~l~~~~~~~~~~~~l~ 101 (126)
T cd04046 76 C-DEFLGQATLSADPNDSQTLRTLPLR 101 (126)
T ss_pred C-CCceEEEEEecccCCCcCceEEEcc
Confidence 4 8999999999987554444555543
No 172
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.64 E-value=1.3e-15 Score=123.70 Aligned_cols=102 Identities=24% Similarity=0.318 Sum_probs=86.0
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136 130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 209 (399)
Q Consensus 130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~ 209 (399)
+.|+|+|++|++|+..+..+.+||||+|.+. ...+++|++++++.||+|||.|.| .+... ...|.|+|||++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~----~~~~~kT~~~~~t~~P~Wne~f~~-~v~~~---~~~L~v~v~d~~ 72 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN----GIVKGRTVTISNTLNPVWDEVLYV-PVTSP---NQKITLEVMDYE 72 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEEC----CEEeeceeEECCCcCCccCceEEE-EecCC---CCEEEEEEEECC
Confidence 4689999999999999988999999999994 235789999999999999999988 35433 368999999999
Q ss_pred CCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136 210 KYGH-DFLGEARFPLNRLRPHISRDLCLNLCK 240 (399)
Q Consensus 210 ~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~ 240 (399)
..++ ++||++.++|.++... ....|+.|.+
T Consensus 73 ~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 73 KVGKDRSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred CCCCCCeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 9888 8999999999999876 4566666643
No 173
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.64 E-value=3e-15 Score=118.91 Aligned_cols=83 Identities=24% Similarity=0.556 Sum_probs=68.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEc---
Q psy12136 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD--- 208 (399)
Q Consensus 132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~--- 208 (399)
|.|+|++|+||. +.+||||++++.+.+....+.||+++++|+||+|||+|.| .++. ...|++.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i-~l~~----s~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEI-ELEG----SQTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEE-EeCC----CCEEEEEEEEcccc
Confidence 689999999995 4489999999987543346899999999999999999999 4652 46999999998
Q ss_pred ----CCCCC-cceeeEEecCc
Q psy12136 209 ----DKYGH-DFLGEARFPLN 224 (399)
Q Consensus 209 ----~~~~~-~~lG~~~i~l~ 224 (399)
+..++ ++||.+.+.|.
T Consensus 71 ~~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 71 KVKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred cccccccCcccEEEEEEEEEC
Confidence 45566 99988777664
No 174
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.64 E-value=2.5e-15 Score=124.45 Aligned_cols=88 Identities=24% Similarity=0.403 Sum_probs=76.6
Q ss_pred eeEEEEEEeeecCCCCCC----------CCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEE
Q psy12136 273 RALIVNLIKCTNLIPMDS----------NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTL 342 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~----------~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l 342 (399)
+.|.|+|++|++|...+. .+.+||||++.+.+ ....+|++++++.||.|||+|.|.+. ....|
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~---~~~~kT~~~~~t~~P~Wne~f~~~v~----~~~~l 76 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD---THIGKTSTKPKTNSPVWNEEFTTEVH----NGRNL 76 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC---EEEeEEeEcCCCCCCCcceeEEEEcC----CCCEE
Confidence 679999999999988775 26799999999952 25579999999999999999999996 24789
Q ss_pred EEEEEeCCCCCCCeeeEEEEEccCC
Q psy12136 343 VITVWDKDYGKSNDYLGCLELCCNS 367 (399)
Q Consensus 343 ~i~V~d~~~~~~d~~lG~~~i~l~~ 367 (399)
.|.|||++..+.+++||++.++|++
T Consensus 77 ~~~v~d~~~~~~~~~iG~~~i~l~~ 101 (132)
T cd04014 77 ELTVFHDAAIGPDDFVANCTISFED 101 (132)
T ss_pred EEEEEeCCCCCCCceEEEEEEEhHH
Confidence 9999999988889999999999876
No 175
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=1.5e-15 Score=124.18 Aligned_cols=91 Identities=29% Similarity=0.366 Sum_probs=77.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 211 (399)
Q Consensus 132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~ 211 (399)
|+|.|++|++|++.+..+.+||||+|++.+. ....||++++++.||+|||+|.|. +... ....|.|+|||++..
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~---~~~~kT~~v~~t~nP~Wne~f~f~-~~~~--~~~~L~~~V~d~d~~ 75 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKK---KINDRDNYIPNTLNPVFGKMFELE-ATLP--GNSILKISVMDYDLL 75 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCe---eccceeeEEECCCCCccceEEEEE-ecCC--CCCEEEEEEEECCCC
Confidence 7899999999999998899999999999632 234678888899999999999993 4322 247899999999998
Q ss_pred CC-cceeeEEecCcccCC
Q psy12136 212 GH-DFLGEARFPLNRLRP 228 (399)
Q Consensus 212 ~~-~~lG~~~i~l~~l~~ 228 (399)
++ ++||++.++|.+...
T Consensus 76 ~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 76 GSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCceeEEEEEeeccccc
Confidence 77 999999999998764
No 176
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.62 E-value=7.9e-15 Score=121.35 Aligned_cols=108 Identities=20% Similarity=0.238 Sum_probs=84.3
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCC---------CceEeecceeCCCCcee-cceEEEEeccCcccccEEEE
Q psy12136 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH---------KRKYKTGVKWKTLNPIF-NEEFAIETKITELSKQTLVI 344 (399)
Q Consensus 275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~---------~~~~kT~v~~~t~nP~w-ne~f~f~v~~~~l~~~~l~i 344 (399)
+.|.+++|+||+ .+..|.+||||++++.+... ..+++|++++++.||+| ||+|.|.+.. +..|.|
T Consensus 3 ~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~----~~~L~v 77 (137)
T cd08691 3 FSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP----TDVLEI 77 (137)
T ss_pred EEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC----CCEEEE
Confidence 578999999998 67789999999999975432 24799999999999999 9999999853 358999
Q ss_pred EEEeCCCCCC---CeeeEEEEEccCCCCCcchhhhhhhcCC-CCceeeEEeCCCCCC
Q psy12136 345 TVWDKDYGKS---NDYLGCLELCCNSKGDRLRHWVDMMKYP-DHKHEGIHNLSIKPL 397 (399)
Q Consensus 345 ~V~d~~~~~~---d~~lG~~~i~l~~~~~~~~~w~~l~~~p-~~~~~~Wh~L~~~~~ 397 (399)
+|||++..++ +++||++.|++.+.-. .+ ......|++|..+..
T Consensus 78 ~V~D~~~~~~~~~~d~lG~~~i~l~~l~~----------~~~~~~~~~~~~l~k~~~ 124 (137)
T cd08691 78 EVKDKFAKSRPIIRRFLGKLSIPVQRLLE----------RHAIGDQELSYTLGRRTP 124 (137)
T ss_pred EEEecCCCCCccCCceEEEEEEEHHHhcc----------cccCCceEEEEECCcCCC
Confidence 9999875433 7999999999876321 11 112567888776653
No 177
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.62 E-value=5.9e-15 Score=121.34 Aligned_cols=96 Identities=23% Similarity=0.223 Sum_probs=79.3
Q ss_pred EEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCCCeee
Q psy12136 279 LIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYL 358 (399)
Q Consensus 279 v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~l 358 (399)
|++|++|+. ..+.+||||++++. ..+++|++++++.||+|||+|.|.+.........|.|+|||++..+++++|
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~----~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~i 75 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFR----GVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLI 75 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEEC----CEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceE
Confidence 789999987 67889999999994 367899999999999999999999964334467899999999998889999
Q ss_pred EEEEEccCCCC--Ccchhhhhhhc
Q psy12136 359 GCLELCCNSKG--DRLRHWVDMMK 380 (399)
Q Consensus 359 G~~~i~l~~~~--~~~~~w~~l~~ 380 (399)
|++.+++++.. .....|+.|..
T Consensus 76 G~~~~~l~~l~~~~~~~~~~~L~~ 99 (127)
T cd08373 76 GSATVSLQDLVSEGLLEVTEPLLD 99 (127)
T ss_pred EEEEEEhhHcccCCceEEEEeCcC
Confidence 99999998633 34445555543
No 178
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.62 E-value=8.2e-15 Score=120.01 Aligned_cols=117 Identities=23% Similarity=0.342 Sum_probs=89.1
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136 130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 209 (399)
Q Consensus 130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~ 209 (399)
.+|.|+|++|+ |...+..+.+||||+|++.. ....+|++++++.||+|||.|.| .+.. ...|.|+|||++
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~----~~~~kT~v~~~t~~P~Wne~f~~-~~~~----~~~l~~~V~d~~ 71 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDG----QPPKKTEVSKKTSNPKWNEHFTV-LVTP----QSTLEFKVWSHH 71 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECC----cccEEeeeeCCCCCCccccEEEE-EeCC----CCEEEEEEEeCC
Confidence 47999999998 65555578899999999952 24789999999999999999999 4543 368999999999
Q ss_pred CCCC-cceeeEEecCcccCCCcc-----eeEEEeecccCCCCCccccccccccccceeEEEEE
Q psy12136 210 KYGH-DFLGEARFPLNRLRPHIS-----RDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTL 266 (399)
Q Consensus 210 ~~~~-~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l 266 (399)
..+. ++||++.++|.++..... ...|+++.+.. .......|+|.+.+
T Consensus 72 ~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~G~~~~~~ 124 (125)
T cd04021 72 TLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN----------KGSSVKVGELTVIL 124 (125)
T ss_pred CCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC----------CCcceeeeeEEEEe
Confidence 9877 999999999999875433 23466665311 11235678777654
No 179
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.62 E-value=7.4e-15 Score=118.56 Aligned_cols=89 Identities=37% Similarity=0.586 Sum_probs=78.2
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCC
Q psy12136 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 354 (399)
Q Consensus 275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~ 354 (399)
|+|.|++|++|+..+..+.+||||+|.+.+ ...++|+++.++.||.|||+|.|.+... ....|.|+|||++..++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~---~~~~~T~v~~~~~~P~Wne~f~~~~~~~--~~~~l~~~v~d~~~~~~ 75 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNG---EKVFKTKTIKKTLNPVWNESFEVPVPSR--VRAVLKVEVYDWDRGGK 75 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECC---CcceeeceecCCCCCcccccEEEEeccC--CCCEEEEEEEeCCCCCC
Confidence 578999999999988888899999999843 3668999999999999999999998632 45789999999998888
Q ss_pred CeeeEEEEEccCCC
Q psy12136 355 NDYLGCLELCCNSK 368 (399)
Q Consensus 355 d~~lG~~~i~l~~~ 368 (399)
+++||++.+++...
T Consensus 76 ~~~iG~~~~~l~~l 89 (115)
T cd04040 76 DDLLGSAYIDLSDL 89 (115)
T ss_pred CCceEEEEEEHHHc
Confidence 99999999998763
No 180
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.61 E-value=4.3e-15 Score=117.99 Aligned_cols=84 Identities=26% Similarity=0.259 Sum_probs=71.7
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCC-CceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeC----
Q psy12136 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDK---- 349 (399)
Q Consensus 275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~---- 349 (399)
|.|+|.+|+||. +.+||||++++.+.+. ..+.+|+++++|.||+|||+|.|.+. . ...|.|.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~--s~~L~~~v~d~~~~~ 71 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--G--SQTLRILCYEKCYSK 71 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--C--CCEEEEEEEEccccc
Confidence 679999999995 4589999999876544 37899999999999999999999986 2 46999999998
Q ss_pred ---CCCCCCeeeEEEEEccCC
Q psy12136 350 ---DYGKSNDYLGCLELCCNS 367 (399)
Q Consensus 350 ---~~~~~d~~lG~~~i~l~~ 367 (399)
+..+.|++||++.|.|+.
T Consensus 72 ~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 72 VKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccccCcccEEEEEEEEECH
Confidence 456789999998888864
No 181
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.61 E-value=3.1e-15 Score=119.81 Aligned_cols=98 Identities=24% Similarity=0.299 Sum_probs=78.7
Q ss_pred EEEEEeeecCCCCCCCCCCCcEEEEEEecCC-CC-ceEeecceeCCCCceecceEEEEeccCccc----ccEEEEEEEeC
Q psy12136 276 IVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL-HK-RKYKTGVKWKTLNPIFNEEFAIETKITELS----KQTLVITVWDK 349 (399)
Q Consensus 276 ~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~-~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~----~~~l~i~V~d~ 349 (399)
.+..++|++|+..+..+.+||||+|++.+.. .. ..++|++++++.||+|| +|.|.+. .+. ...|.|+|||+
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~--~l~~~~~~~~l~~~V~d~ 79 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQ--KLCNGDYDRPIKIEVYDY 79 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHH--HhcCCCcCCEEEEEEEEe
Confidence 4566799999999999999999999987643 12 67999999999999999 6777653 232 46899999999
Q ss_pred CCCCCCeeeEEEEEccCCCCCcchhhh
Q psy12136 350 DYGKSNDYLGCLELCCNSKGDRLRHWV 376 (399)
Q Consensus 350 ~~~~~d~~lG~~~i~l~~~~~~~~~w~ 376 (399)
+..+++++||++.++++..-....+++
T Consensus 80 d~~~~d~~iG~~~~~l~~l~~~~~~~~ 106 (110)
T cd04047 80 DSSGKHDLIGEFETTLDELLKSSPLEF 106 (110)
T ss_pred CCCCCCcEEEEEEEEHHHHhcCCCceE
Confidence 999999999999999887543333333
No 182
>PLN03008 Phospholipase D delta
Probab=99.61 E-value=4.9e-15 Score=150.74 Aligned_cols=126 Identities=21% Similarity=0.321 Sum_probs=102.2
Q ss_pred CCCEEEEEEEEecCCCCCCC------------------------------------------CCCCCcEEEEEEecCCCC
Q psy12136 128 TTCSLHVTLHRAKGLRAMDI------------------------------------------HGTSDPFCKLNLVPLTKT 165 (399)
Q Consensus 128 ~~~~L~V~V~~a~~L~~~~~------------------------------------------~~~~dpyv~v~l~~~~~~ 165 (399)
-++.|.|+|++|++|+.+|. .+.+||||+|.|. .
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg----~ 87 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVP----Q 87 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEEC----C
Confidence 35789999999999875211 2367999999994 2
Q ss_pred CceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCCCCcceeeEEecCcccCCCcceeEEEeecccCCCC
Q psy12136 166 SHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVP 245 (399)
Q Consensus 166 ~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~ 245 (399)
.++.||++++++.||+|||+|.|. +... ...|.|+|+|+|.++.++||++.|||.++..+...+.|++|.+...
T Consensus 88 ~rv~RTrVi~n~~NPvWNE~F~f~-vah~---~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~-- 161 (868)
T PLN03008 88 ATLARTRVLKNSQEPLWDEKFNIS-IAHP---FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASG-- 161 (868)
T ss_pred cceeeEEeCCCCCCCCcceeEEEE-ecCC---CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCC--
Confidence 356799999999999999999994 5542 3689999999999988999999999999999998999999976322
Q ss_pred CccccccccccccceeEEEEEeeecc
Q psy12136 246 REEEVWGEEECWQHGKIFLTLCFSTK 271 (399)
Q Consensus 246 ~~~~~~~~~~~~~~G~l~l~l~~~~~ 271 (399)
.+....|+|+|++.|.|-
T Consensus 162 --------kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 162 --------KPPKAETAIFIDMKFTPF 179 (868)
T ss_pred --------CCCCCCcEEEEEEEEEEc
Confidence 123457899999999763
No 183
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.61 E-value=1.8e-14 Score=118.51 Aligned_cols=121 Identities=25% Similarity=0.392 Sum_probs=91.7
Q ss_pred EEEEEEEEecCCCCCC--CCCCCCcEEEEEEecCCC-CCceEecccccCCC-CCeecceEEeceeCcccCCCceEEEEEE
Q psy12136 131 SLHVTLHRAKGLRAMD--IHGTSDPFCKLNLVPLTK-TSHRLRTKTCLRTI-NPEFHEKLTFYSVSETDLSLQSLHILVL 206 (399)
Q Consensus 131 ~L~V~V~~a~~L~~~~--~~~~~dpyv~v~l~~~~~-~~~~~rT~~~~~t~-nP~wne~f~f~~v~~~~l~~~~L~~~V~ 206 (399)
+|+|+|++|+||+..+ ..+..||||++++.+... ...++||+++.++. ||+|||+|.|. +...+ ...|.|+||
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~-~~~~~--~~~l~~~V~ 79 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFD-VTVPE--LAFLRFVVY 79 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEE-EeCCC--eEEEEEEEE
Confidence 6999999999999887 567899999999975443 45789999987775 99999999994 44332 357999999
Q ss_pred EcCCCCCcceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136 207 DDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 268 (399)
Q Consensus 207 d~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~ 268 (399)
|++..++++||++.+++.++..+ ..++.|..... .....|.|.+.+.+
T Consensus 80 d~~~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~-----------~~~~~~~l~v~~~~ 127 (128)
T cd00275 80 DEDSGDDDFLGQACLPLDSLRQG---YRHVPLLDSKG-----------EPLELSTLFVHIDI 127 (128)
T ss_pred eCCCCCCcEeEEEEEEhHHhcCc---eEEEEecCCCC-----------CCCcceeEEEEEEE
Confidence 99988339999999999999643 34566653111 01346788877654
No 184
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.60 E-value=6.8e-15 Score=119.11 Aligned_cols=98 Identities=23% Similarity=0.335 Sum_probs=79.6
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCC
Q psy12136 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 354 (399)
Q Consensus 275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~ 354 (399)
|.|+|++|++|+.. +.+||||++++.+ ...++|+++++ .||.|||+|.|.+...++....|.|.+||.+...+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~---~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~ 74 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQ---VEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDR 74 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECC---EEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCC
Confidence 78999999999875 7899999999942 25689999999 99999999999998666556788999999887777
Q ss_pred CeeeEEEEEccCCCCCcchhhhhhh
Q psy12136 355 NDYLGCLELCCNSKGDRLRHWVDMM 379 (399)
Q Consensus 355 d~~lG~~~i~l~~~~~~~~~w~~l~ 379 (399)
+..+|.+.|+....+...++|++|.
T Consensus 75 ~~~~g~v~l~~~~~~~~~~~w~~L~ 99 (117)
T cd08383 75 DIVIGKVALSKLDLGQGKDEWFPLT 99 (117)
T ss_pred eeEEEEEEecCcCCCCcceeEEECc
Confidence 8899998888665555555555554
No 185
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.60 E-value=8.9e-15 Score=119.02 Aligned_cols=89 Identities=31% Similarity=0.394 Sum_probs=76.1
Q ss_pred EEEeeecCCCCCCCCCCCcEEEEEEecCC--CC-ceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCC---
Q psy12136 278 NLIKCTNLIPMDSNGFSDPFIKLYLKPDL--HK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY--- 351 (399)
Q Consensus 278 ~v~~a~~L~~~~~~g~~dpyV~v~l~~~~--~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~--- 351 (399)
..++|++|+..+..+.+||||+|++.+.. .. ..++|++++++.||+|||+|.|.+.... ...|.|+|||++.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~--~~~l~~~V~d~d~~~~ 82 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE--VQKLRFEVYDVDSKSK 82 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEe--eeEEEEEEEEecCCcC
Confidence 45789999999988999999999998653 22 5799999999999999999999875433 3579999999997
Q ss_pred -CCCCeeeEEEEEccCCC
Q psy12136 352 -GKSNDYLGCLELCCNSK 368 (399)
Q Consensus 352 -~~~d~~lG~~~i~l~~~ 368 (399)
.+++++||++.+++++.
T Consensus 83 ~~~~~d~iG~~~i~l~~l 100 (120)
T cd04048 83 DLSDHDFLGEAECTLGEI 100 (120)
T ss_pred CCCCCcEEEEEEEEHHHH
Confidence 78899999999998763
No 186
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.59 E-value=7.7e-15 Score=117.49 Aligned_cols=98 Identities=26% Similarity=0.309 Sum_probs=79.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCC-CCCceEecccccCCCCCeecceEEeceeCcccCC----CceEEEEEE
Q psy12136 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLT-KTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS----LQSLHILVL 206 (399)
Q Consensus 132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~-~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~----~~~L~~~V~ 206 (399)
+.+..++|++|+..+..+.+||||+|++.+.. .....++|++++++.||+|| .|.|. ..++. ...|.|+||
T Consensus 2 ~~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~---~~~l~~~~~~~~l~~~V~ 77 (110)
T cd04047 2 VVELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIP---LQKLCNGDYDRPIKIEVY 77 (110)
T ss_pred EEEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEE---HHHhcCCCcCCEEEEEEE
Confidence 34667899999999999999999999997532 23457899999999999999 67763 22222 478999999
Q ss_pred EcCCCCC-cceeeEEecCcccCCCccee
Q psy12136 207 DDDKYGH-DFLGEARFPLNRLRPHISRD 233 (399)
Q Consensus 207 d~~~~~~-~~lG~~~i~l~~l~~~~~~~ 233 (399)
|++..++ ++||++.+++.++...+..+
T Consensus 78 d~d~~~~d~~iG~~~~~l~~l~~~~~~~ 105 (110)
T cd04047 78 DYDSSGKHDLIGEFETTLDELLKSSPLE 105 (110)
T ss_pred EeCCCCCCcEEEEEEEEHHHHhcCCCce
Confidence 9999988 99999999999998554433
No 187
>KOG2059|consensus
Probab=99.59 E-value=3.3e-15 Score=146.61 Aligned_cols=193 Identities=18% Similarity=0.188 Sum_probs=145.4
Q ss_pred cCccccCCCccccccCCCcccCCCCCCCCCCCcccCCCCccccCCcccccCCcccccccccccCCCCCcceEEEEEEEEe
Q psy12136 47 SSATVRSSPLMSRHTLPLTVNENSISPVSPLSPICNGNFNTQQESSGTLKRGVITEEKEYFVTSQADTNLGSIELTVTYD 126 (399)
Q Consensus 47 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~G~i~~~l~y~ 126 (399)
+++||+|.| ++||+.||++...+..... .+ +..+|. .+...+.+.+++|+|++.+...
T Consensus 68 l~fYv~D~d-~~~D~~IGKvai~re~l~~-----~~-~~d~W~---------------~L~~VD~dsEVQG~v~l~l~~~ 125 (800)
T KOG2059|consen 68 LSFYVWDRD-LKRDDIIGKVAIKREDLHM-----YP-GKDTWF---------------SLQPVDPDSEVQGKVHLELALT 125 (800)
T ss_pred EEEEEeccc-cccccccceeeeeHHHHhh-----CC-CCccce---------------eccccCCChhhceeEEEEEEec
Confidence 347899999 9999999998877665533 22 444444 3344567889999999999887
Q ss_pred CC--CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcc----------
Q psy12136 127 ST--TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET---------- 194 (399)
Q Consensus 127 ~~--~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~---------- 194 (399)
.. ...+++.+++++++.+....+ +|||++|.+..+.. ....+|+++++|.+|.|||.|.| .+...
T Consensus 126 e~~~~~~~~c~~L~~r~~~P~~~~~-~dp~~~v~~~g~~~-~~~~~T~~~kkt~~p~~~Ev~~f-~~~~~~~~s~ks~~~ 202 (800)
T KOG2059|consen 126 EAIQSSGLVCHVLKTRQGLPIINGQ-CDPFARVTLCGPSK-LKEKKTKVKKKTTNPQFDEVFYF-EVTREESYSKKSLFM 202 (800)
T ss_pred cccCCCcchhhhhhhcccCceeCCC-CCcceEEeecccch-hhccccceeeeccCcchhhheee-eeccccccccchhcC
Confidence 64 478999999999999887444 99999999865433 33479999999999999999999 45544
Q ss_pred ---cCCCceEEEEEEE-cCCCCC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeee
Q psy12136 195 ---DLSLQSLHILVLD-DDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS 269 (399)
Q Consensus 195 ---~l~~~~L~~~V~d-~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~ 269 (399)
+-....|++++|+ ++.... +|+|++.+++..+........|+.|+.. ....+....+..|.+++.++|.
T Consensus 203 ~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~------~~g~~~~~~~~lGslrl~v~y~ 276 (800)
T KOG2059|consen 203 PEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPR------PNGEKSSDGGDLGSLRLNVTYT 276 (800)
T ss_pred cccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecC------CCcccCCCCCCccceeeeEEee
Confidence 1123578899998 566665 9999999999999877777888888753 1112233357899999999885
Q ss_pred c
Q psy12136 270 T 270 (399)
Q Consensus 270 ~ 270 (399)
.
T Consensus 277 ~ 277 (800)
T KOG2059|consen 277 E 277 (800)
T ss_pred e
Confidence 3
No 188
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.58 E-value=1.1e-14 Score=119.39 Aligned_cols=91 Identities=19% Similarity=0.288 Sum_probs=78.0
Q ss_pred eEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeeccee-CCCCceecceEEEEeccCcc--cccEEEEEEEeCC
Q psy12136 274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKW-KTLNPIFNEEFAIETKITEL--SKQTLVITVWDKD 350 (399)
Q Consensus 274 ~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l--~~~~l~i~V~d~~ 350 (399)
.|.|+|++|++|+..+..+.+||||+|++.+ ..+++|++.. ++.||.|||.|.|.+....+ ....|.|+|||++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~---~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~ 77 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP---SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER 77 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC---CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC
Confidence 4789999999999988889999999999964 2667888875 58999999999999975432 2478999999999
Q ss_pred CCCCCeeeEEEEEccCC
Q psy12136 351 YGKSNDYLGCLELCCNS 367 (399)
Q Consensus 351 ~~~~d~~lG~~~i~l~~ 367 (399)
.++++++||++.|++.+
T Consensus 78 ~~~~~~~lG~~~i~l~~ 94 (125)
T cd04051 78 PSLGDKLIGEVRVPLKD 94 (125)
T ss_pred CCCCCCcEEEEEEEHHH
Confidence 88889999999999876
No 189
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.57 E-value=3.4e-14 Score=116.23 Aligned_cols=91 Identities=25% Similarity=0.345 Sum_probs=78.7
Q ss_pred eeEEEEEEeeecCCCCC-CCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCC
Q psy12136 273 RALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 351 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~-~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~ 351 (399)
|.|.|+|++|++|+..+ ..+.+||||++.+.+. ...++|+++.++.||.|||.|.|.+. . ....|.|+|||++.
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~--~~~~kT~~~~~~~~P~Wne~~~~~v~--~-~~~~l~~~v~d~~~ 76 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR--RELARTKVKKDTSNPVWNETKYILVN--S-LTEPLNLTVYDFND 76 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC--CcceEeeeecCCCCCcceEEEEEEeC--C-CCCEEEEEEEecCC
Confidence 67999999999998655 3567999999999642 36799999999999999999999986 2 35789999999998
Q ss_pred CCCCeeeEEEEEccCCC
Q psy12136 352 GKSNDYLGCLELCCNSK 368 (399)
Q Consensus 352 ~~~d~~lG~~~i~l~~~ 368 (399)
.+++++||++.+++.+.
T Consensus 77 ~~~d~~iG~~~~~l~~l 93 (124)
T cd04044 77 KRKDKLIGTAEFDLSSL 93 (124)
T ss_pred CCCCceeEEEEEEHHHh
Confidence 88899999999998863
No 190
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.54 E-value=2.8e-14 Score=114.37 Aligned_cols=100 Identities=21% Similarity=0.297 Sum_probs=80.0
Q ss_pred CCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCCCCcceeeEEecCcccC
Q psy12136 148 HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLR 227 (399)
Q Consensus 148 ~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~~~~~lG~~~i~l~~l~ 227 (399)
.|.+||||+|++.. ...++|++++++.||+|||.|.| .+... ....|.|.|||++..++++||++.++|+++.
T Consensus 10 ~G~~dPYv~v~v~~----~~~~kT~v~~~t~nP~Wne~f~f-~v~~~--~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~ 82 (111)
T cd04052 10 TGLLSPYAELYLNG----KLVYTTRVKKKTNNPSWNASTEF-LVTDR--RKSRVTVVVKDDRDRHDPVLGSVSISLNDLI 82 (111)
T ss_pred CCCCCceEEEEECC----EEEEEEeeeccCCCCccCCceEE-EecCc--CCCEEEEEEEECCCCCCCeEEEEEecHHHHH
Confidence 57899999999952 34679999999999999999999 35432 3577999999999984499999999999985
Q ss_pred CC-cceeEEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136 228 PH-ISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 270 (399)
Q Consensus 228 ~~-~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~ 270 (399)
.. .....|+.|.. ...|+|++++.|.|
T Consensus 83 ~~~~~~~~w~~L~~----------------~~~G~i~~~~~~~p 110 (111)
T cd04052 83 DATSVGQQWFPLSG----------------NGQGRIRISALWKP 110 (111)
T ss_pred hhhhccceeEECCC----------------CCCCEEEEEEEEec
Confidence 43 33467777752 24799999999876
No 191
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.53 E-value=8e-14 Score=105.59 Aligned_cols=85 Identities=36% Similarity=0.588 Sum_probs=75.0
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCC
Q psy12136 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 354 (399)
Q Consensus 275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~ 354 (399)
|.|+|++|+||+..+..+..||||++.+.+... ..++|+++.++.+|.|||+|.|.+...+. ..|.|+|||++..++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~-~~~~T~~~~~~~~P~w~e~~~~~~~~~~~--~~l~~~V~~~~~~~~ 77 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES-TKYKTKVKKNTSNPVWNEEFEFPLDDPDL--DSLSFEVWDKDSFGK 77 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC-EEEEECCBSSBSSEEEEEEEEEEESHGCG--TEEEEEEEEETSSSS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeee-eeeeeeeeeccccceeeeeeeeeeecccc--cceEEEEEECCCCCC
Confidence 689999999999988888999999999986443 67999999999999999999999875554 459999999999988
Q ss_pred CeeeEEEE
Q psy12136 355 NDYLGCLE 362 (399)
Q Consensus 355 d~~lG~~~ 362 (399)
+++||++.
T Consensus 78 ~~~iG~~~ 85 (85)
T PF00168_consen 78 DELIGEVK 85 (85)
T ss_dssp EEEEEEEE
T ss_pred CCEEEEEC
Confidence 99999974
No 192
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.53 E-value=6.5e-14 Score=115.22 Aligned_cols=104 Identities=25% Similarity=0.399 Sum_probs=84.3
Q ss_pred eeEEEEEEeeecCCCCC--CCCCCCcEEEEEEecCCC--CceEeecceeCCC-CceecceEEEEeccCcccccEEEEEEE
Q psy12136 273 RALIVNLIKCTNLIPMD--SNGFSDPFIKLYLKPDLH--KRKYKTGVKWKTL-NPIFNEEFAIETKITELSKQTLVITVW 347 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~--~~g~~dpyV~v~l~~~~~--~~~~kT~v~~~t~-nP~wne~f~f~v~~~~l~~~~l~i~V~ 347 (399)
.+|+|+|++|+||+..+ ..+..||||++++.+... ..+++|+++.++. ||.|||+|.|.+...+ ...|.|+||
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~--~~~l~~~V~ 79 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE--LAFLRFVVY 79 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC--eEEEEEEEE
Confidence 47899999999999887 477899999999976543 3789999988775 9999999999987433 357999999
Q ss_pred eCCCCCCCeeeEEEEEccCCCCCcchhhhhhhc
Q psy12136 348 DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMK 380 (399)
Q Consensus 348 d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~ 380 (399)
|++.. ++++||++.++++....+. +|+.|+.
T Consensus 80 d~~~~-~~~~iG~~~~~l~~l~~g~-~~~~l~~ 110 (128)
T cd00275 80 DEDSG-DDDFLGQACLPLDSLRQGY-RHVPLLD 110 (128)
T ss_pred eCCCC-CCcEeEEEEEEhHHhcCce-EEEEecC
Confidence 99987 8999999999998764333 3455543
No 193
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.52 E-value=9.8e-14 Score=113.29 Aligned_cols=95 Identities=28% Similarity=0.403 Sum_probs=81.1
Q ss_pred eEEEEEEeeecCCCCCC--CC--CCCcEEEEEEecCCCCceEeecceeCCCC--ceecceEEEEecc-------------
Q psy12136 274 ALIVNLIKCTNLIPMDS--NG--FSDPFIKLYLKPDLHKRKYKTGVKWKTLN--PIFNEEFAIETKI------------- 334 (399)
Q Consensus 274 ~L~v~v~~a~~L~~~~~--~g--~~dpyV~v~l~~~~~~~~~kT~v~~~t~n--P~wne~f~f~v~~------------- 334 (399)
.|+|.|++|++++..+. .| .+||||++.+.+. ...+++|.++++++| |.||+.|.|++..
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~-~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~ 79 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGL-EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE 79 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccC-cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence 37899999999665433 55 4999999999874 238999999999999 9999999999876
Q ss_pred --------CcccccEEEEEEEeCCCCCCCeeeEEEEEccCCCC
Q psy12136 335 --------TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG 369 (399)
Q Consensus 335 --------~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~ 369 (399)
+.+....|.|+|||.|.++.|++||.++|++....
T Consensus 80 ~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~ 122 (133)
T cd08374 80 HFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILP 122 (133)
T ss_pred cccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcc
Confidence 45566889999999999999999999999998654
No 194
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.47 E-value=2.9e-13 Score=102.47 Aligned_cols=84 Identities=32% Similarity=0.606 Sum_probs=72.9
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 211 (399)
Q Consensus 132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~ 211 (399)
|.|+|++|+||...+..+..+|||++.+..... ..++|++++++.+|.|||.|.|. +...+. ..|.|+|||++..
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~--~~~~T~~~~~~~~P~w~e~~~~~-~~~~~~--~~l~~~V~~~~~~ 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES--TKYKTKVKKNTSNPVWNEEFEFP-LDDPDL--DSLSFEVWDKDSF 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC--EEEEECCBSSBSSEEEEEEEEEE-ESHGCG--TEEEEEEEEETSS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeee--eeeeeeeeeccccceeeeeeeee-eecccc--cceEEEEEECCCC
Confidence 789999999999988888999999999975433 67999999999999999999994 665554 4499999999999
Q ss_pred CC-cceeeEE
Q psy12136 212 GH-DFLGEAR 220 (399)
Q Consensus 212 ~~-~~lG~~~ 220 (399)
++ ++||++.
T Consensus 76 ~~~~~iG~~~ 85 (85)
T PF00168_consen 76 GKDELIGEVK 85 (85)
T ss_dssp SSEEEEEEEE
T ss_pred CCCCEEEEEC
Confidence 97 9999974
No 195
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.46 E-value=4.6e-13 Score=109.64 Aligned_cols=87 Identities=25% Similarity=0.325 Sum_probs=74.6
Q ss_pred eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCC
Q psy12136 273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 352 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~ 352 (399)
..|.|+|.+|+ |...+..+.+||||+|++.+ ...++|++++++.||+|||+|.|.+.. ...|.|+|||++..
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~---~~~~kT~v~~~t~~P~Wne~f~~~~~~----~~~l~~~V~d~~~~ 73 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDG---QPPKKTEVSKKTSNPKWNEHFTVLVTP----QSTLEFKVWSHHTL 73 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECC---cccEEeeeeCCCCCCccccEEEEEeCC----CCEEEEEEEeCCCC
Confidence 36899999998 55555578899999999953 147899999999999999999999852 36899999999998
Q ss_pred CCCeeeEEEEEccCC
Q psy12136 353 KSNDYLGCLELCCNS 367 (399)
Q Consensus 353 ~~d~~lG~~~i~l~~ 367 (399)
+.+++||++.+++.+
T Consensus 74 ~~~~~iG~~~i~l~~ 88 (125)
T cd04021 74 KADVLLGEASLDLSD 88 (125)
T ss_pred CCCcEEEEEEEEHHH
Confidence 899999999999875
No 196
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.44 E-value=3e-13 Score=108.38 Aligned_cols=85 Identities=26% Similarity=0.389 Sum_probs=67.6
Q ss_pred CCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCCCeeeEEEEEccCCC-
Q psy12136 290 SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK- 368 (399)
Q Consensus 290 ~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~- 368 (399)
.+|.+||||+|.+.+ ...++|++++++.||.|||.|.|.+. +.....|.|.|||++.+ ++++||.+.++|++.
T Consensus 9 ~~G~~dPYv~v~v~~---~~~~kT~v~~~t~nP~Wne~f~f~v~--~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~ 82 (111)
T cd04052 9 KTGLLSPYAELYLNG---KLVYTTRVKKKTNNPSWNASTEFLVT--DRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLI 82 (111)
T ss_pred cCCCCCceEEEEECC---EEEEEEeeeccCCCCccCCceEEEec--CcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHH
Confidence 468899999999942 25689999999999999999999986 33457899999999988 899999999998763
Q ss_pred --CCcchhhhhhhc
Q psy12136 369 --GDRLRHWVDMMK 380 (399)
Q Consensus 369 --~~~~~~w~~l~~ 380 (399)
+.....|+.|..
T Consensus 83 ~~~~~~~~w~~L~~ 96 (111)
T cd04052 83 DATSVGQQWFPLSG 96 (111)
T ss_pred hhhhccceeEECCC
Confidence 222345555543
No 197
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.44 E-value=4e-13 Score=148.89 Aligned_cols=119 Identities=24% Similarity=0.387 Sum_probs=95.9
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136 130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 209 (399)
Q Consensus 130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~ 209 (399)
+.|.|+|++|+||. +..+.+||||+|.+. ...++||++++++.||+|||.|.| .+.... ....|.|+|||+|
T Consensus 1980 G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g----~~~~~kTkvvk~~~nP~Wne~f~~-~~~~p~-~~~~l~iev~d~d 2051 (2102)
T PLN03200 1980 GSLTVTIKRGNNLK--QSMGNTNAFCKLTLG----NGPPRQTKVVSHSSSPEWKEGFTW-AFDSPP-KGQKLHISCKSKN 2051 (2102)
T ss_pred cceEEEEeeccccc--cccCCCCCeEEEEEC----CCCcccccccCCCCCCCcccceee-eecCCC-CCCceEEEEEecC
Confidence 78999999999998 346789999999995 244789999999999999999997 233221 2357999999999
Q ss_pred CCCCcceeeEEecCcccCCCcceeEEEeecccCCCCCcccccccccccccee---EEEEEeeec
Q psy12136 210 KYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGK---IFLTLCFST 270 (399)
Q Consensus 210 ~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~---l~l~l~~~~ 270 (399)
.++++.||.+.|++.++..++....|++|.+. ....|. |.+.+.|.+
T Consensus 2052 ~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~~~--------------~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2052 TFGKSSLGKVTIQIDRVVMEGTYSGEYSLNPE--------------SNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred ccCCCCCceEEEEHHHHhcCceeeeeeecCcc--------------cccCCCcceEEEEEEecC
Confidence 99889999999999999988887888888631 134566 888777654
No 198
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.44 E-value=9.5e-13 Score=109.50 Aligned_cols=101 Identities=14% Similarity=0.242 Sum_probs=77.4
Q ss_pred eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCC-
Q psy12136 273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY- 351 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~- 351 (399)
..|.|.|++|++|++++ +|||++.+.+ ....+|+++.++.||.|||.|.|..... -..|.|.||+.+.
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~---~~vaRT~v~~~~~nP~W~E~F~f~~~~~---~~~l~v~v~k~~~~ 79 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDK---TLYARTTSKLKTDTLFWGEHFEFSNLPP---VSVITVNLYRESDK 79 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECC---EEEEEEEEEcCCCCCcceeeEEecCCCc---ccEEEEEEEEccCc
Confidence 57899999999998753 7999999952 2567999999999999999999976432 2579999986552
Q ss_pred C---CCCeeeEEEEEccCC--CCCcchhhhhhhcCCCC
Q psy12136 352 G---KSNDYLGCLELCCNS--KGDRLRHWVDMMKYPDH 384 (399)
Q Consensus 352 ~---~~d~~lG~~~i~l~~--~~~~~~~w~~l~~~p~~ 384 (399)
. .++.+||.+.|++.. .+...+.||+|+...+.
T Consensus 80 ~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~ 117 (146)
T cd04013 80 KKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGN 117 (146)
T ss_pred cccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCC
Confidence 2 257899999999876 34556666666654443
No 199
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.44 E-value=6.5e-13 Score=108.47 Aligned_cols=97 Identities=26% Similarity=0.350 Sum_probs=81.4
Q ss_pred EEEEEEEEecCCCCCC--CCC--CCCcEEEEEEecCCCCCceEecccccCCCC--CeecceEEeceeCc-----------
Q psy12136 131 SLHVTLHRAKGLRAMD--IHG--TSDPFCKLNLVPLTKTSHRLRTKTCLRTIN--PEFHEKLTFYSVSE----------- 193 (399)
Q Consensus 131 ~L~V~V~~a~~L~~~~--~~~--~~dpyv~v~l~~~~~~~~~~rT~~~~~t~n--P~wne~f~f~~v~~----------- 193 (399)
.|+|.|.+|++++..+ ..| .+||||++.|.+. ...+++|.+..+++| |+||+.|.|+ +..
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~--~~~kqkTDVHyrslnG~~~FNwRfvF~-~~~~~~~~~~~~~~ 77 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGL--EEDKQKTDVHYRSLDGEGNFNWRFVFP-FDYLPAEKKIVVIK 77 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccC--cccccccceEEecCCCCcEEeEEEEEe-eecCCccceeEEEe
Confidence 3899999999966543 355 4999999999875 257899999999999 9999999985 554
Q ss_pred ----------ccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCc
Q psy12136 194 ----------TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI 230 (399)
Q Consensus 194 ----------~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~ 230 (399)
+.+....|.|+|||.|.++. ++||+++++|..+..+.
T Consensus 78 ~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 78 KEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred eccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 55667899999999999988 99999999999887543
No 200
>KOG1326|consensus
Probab=99.43 E-value=3.1e-13 Score=137.33 Aligned_cols=238 Identities=25% Similarity=0.317 Sum_probs=159.2
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136 130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 209 (399)
Q Consensus 130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~ 209 (399)
...+|.|++|-+|.+.|.+|.+||||+|.++. ....-++..+.+|+||+|++.|.+. ........|.+.|||+|
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk---~~~~d~~~yip~tlnPVfgkmfel~---~~lp~ek~l~v~vyd~D 686 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGK---KRTLDRAHYIPNTLNPVFGKMFELE---CLLPFEKDLIVEVYDHD 686 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeecc---chhhhhhhcCcCCCCcHHHHHHHhh---cccchhhcceeEEEEee
Confidence 45679999999999999999999999999953 1223567789999999999999873 22222478999999999
Q ss_pred CCCC-cceeeEEecCcccCCC-------cceeEEEeec-ccCC----------------CCCc-----------------
Q psy12136 210 KYGH-DFLGEARFPLNRLRPH-------ISRDLCLNLC-KHYP----------------VPRE----------------- 247 (399)
Q Consensus 210 ~~~~-~~lG~~~i~l~~l~~~-------~~~~~~~~L~-~~~~----------------~~~~----------------- 247 (399)
..+. +.||+..+.|..-... -..++.+.-. .|.. ++..
T Consensus 687 ~~~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~~~i~~~g~~~~ 766 (1105)
T KOG1326|consen 687 LEAQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEVSAIKWKGESDI 766 (1105)
T ss_pred cccccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCcceEEecChhhh
Confidence 9987 9999999998753211 0111110000 0100 0000
Q ss_pred -----------------------------------cc----cccccccccceeEEEEEeeecc---------------ce
Q psy12136 248 -----------------------------------EE----VWGEEECWQHGKIFLTLCFSTK---------------KR 273 (399)
Q Consensus 248 -----------------------------------~~----~~~~~~~~~~G~l~l~l~~~~~---------------~~ 273 (399)
.+ .....+...+|++.+-+.+.|. ..
T Consensus 767 ~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~~ 846 (1105)
T KOG1326|consen 767 YDEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKKY 846 (1105)
T ss_pred hcccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhhe
Confidence 00 0000123456666665544432 57
Q ss_pred eEEEEEEeeecCCCCCCC----CCCCcEEEEEEecCCCCceEeecceeCCCC--ceecceEEEEec---cCccc------
Q psy12136 274 ALIVNLIKCTNLIPMDSN----GFSDPFIKLYLKPDLHKRKYKTGVKWKTLN--PIFNEEFAIETK---ITELS------ 338 (399)
Q Consensus 274 ~L~v~v~~a~~L~~~~~~----g~~dpyV~v~l~~~~~~~~~kT~v~~~t~n--P~wne~f~f~v~---~~~l~------ 338 (399)
.++|.|..-.++...+.. ..+|.||+--+.++. ..+++|.+.+.++. -.||..|.|... +++++
T Consensus 847 ~lrviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gde-e~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kke 925 (1105)
T KOG1326|consen 847 ELRVIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGDE-EEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKKE 925 (1105)
T ss_pred eEEEEEeeccceeecCccceeeeccceEEecccccch-hhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhhh
Confidence 789999988877666553 338999998886532 37899999887753 456666665522 11111
Q ss_pred ------------ccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchh
Q psy12136 339 ------------KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRH 374 (399)
Q Consensus 339 ------------~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~ 374 (399)
-..|.|+|||.|.++.|++||-.+++|+....++.+
T Consensus 926 ~~ws~dete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~pa~s 973 (1105)
T KOG1326|consen 926 YSWSLDETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPAPAKS 973 (1105)
T ss_pred hccccccccccCchheEEEecccCccChhhhhhheeechhhCcCCCCC
Confidence 145999999999999999999999999975544444
No 201
>KOG1326|consensus
Probab=99.43 E-value=1.3e-13 Score=140.08 Aligned_cols=91 Identities=25% Similarity=0.420 Sum_probs=77.6
Q ss_pred eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCC
Q psy12136 273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 352 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~ 352 (399)
-..+|.|++|-+|.+.|.+|.+||||++.++... ..-+...+.+|.||+|++.|.+.+.. ..+..++++|||+|..
T Consensus 613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~--~~d~~~yip~tlnPVfgkmfel~~~l--p~ek~l~v~vyd~D~~ 688 (1105)
T KOG1326|consen 613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKR--TLDRAHYIPNTLNPVFGKMFELECLL--PFEKDLIVEVYDHDLE 688 (1105)
T ss_pred eeEEEEEEEeeeccccCCCCCcCceeeeeeccch--hhhhhhcCcCCCCcHHHHHHHhhccc--chhhcceeEEEEeecc
Confidence 3467999999999999999999999999996311 45677789999999999998887653 3457899999999999
Q ss_pred CCCeeeEEEEEccCC
Q psy12136 353 KSNDYLGCLELCCNS 367 (399)
Q Consensus 353 ~~d~~lG~~~i~l~~ 367 (399)
+.|+.||+..|+++.
T Consensus 689 ~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLEN 703 (1105)
T ss_pred cccchhhceehhhhh
Confidence 999999999999874
No 202
>KOG0905|consensus
Probab=99.42 E-value=1.9e-13 Score=140.36 Aligned_cols=126 Identities=25% Similarity=0.387 Sum_probs=113.1
Q ss_pred CCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEecee
Q psy12136 112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191 (399)
Q Consensus 112 ~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v 191 (399)
..+..|+|+++++|. +++|.|.|.-|++|+-...+..+||||+.+|+|+.....++||+++++|+||.|||+..+..+
T Consensus 1508 p~~iggqV~LsIsY~--~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~ 1585 (1639)
T KOG0905|consen 1508 PGEIGGQVKLSISYN--NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGF 1585 (1639)
T ss_pred ccccCceEEEEEEEc--CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCC
Confidence 334567999999995 999999999999998777677899999999999888788999999999999999999999778
Q ss_pred CcccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136 192 SETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 239 (399)
Q Consensus 192 ~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~ 239 (399)
+.+.+..+.|+++||..+.... .++|.+.|+|.++...+....|+.|.
T Consensus 1586 p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1586 PKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred chhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 8888988999999999999888 99999999999998887766777774
No 203
>PLN03008 Phospholipase D delta
Probab=99.40 E-value=1.4e-12 Score=133.07 Aligned_cols=86 Identities=20% Similarity=0.316 Sum_probs=70.2
Q ss_pred CCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCCCeeeEEEEEccCCC--C
Q psy12136 292 GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--G 369 (399)
Q Consensus 292 g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~--~ 369 (399)
+++||||+|.+.. .++.+|++++++.||+|||+|.|.+.. . ...|.|+|||++.++ +++||++.|++.+. +
T Consensus 75 ~tSDPYV~I~Lg~---~rv~RTrVi~n~~NPvWNE~F~f~vah--~-~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~G 147 (868)
T PLN03008 75 ITSDPYVTVVVPQ---ATLARTRVLKNSQEPLWDEKFNISIAH--P-FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASG 147 (868)
T ss_pred CCCCceEEEEECC---cceeeEEeCCCCCCCCcceeEEEEecC--C-CceEEEEEEcCCccC-CceeEEEEEEHHHcCCC
Confidence 4679999999942 357799999999999999999999873 2 368999999999996 58999999999873 4
Q ss_pred CcchhhhhhhcCCCC
Q psy12136 370 DRLRHWVDMMKYPDH 384 (399)
Q Consensus 370 ~~~~~w~~l~~~p~~ 384 (399)
...+.|++|+..-++
T Consensus 148 e~vd~Wl~Ll~~~~k 162 (868)
T PLN03008 148 ERISGWFPVLGASGK 162 (868)
T ss_pred CceEEEEEccccCCC
Confidence 556677777765543
No 204
>KOG1013|consensus
Probab=99.39 E-value=1.3e-12 Score=118.45 Aligned_cols=114 Identities=30% Similarity=0.419 Sum_probs=103.6
Q ss_pred CCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEecee
Q psy12136 112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191 (399)
Q Consensus 112 ~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v 191 (399)
..+.+|+|.+++.|......|.|.+++|..|..+|.++.+||||++++.|+....-+++|.+.+++.||+||+.|.| .+
T Consensus 215 ~~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~-~i 293 (362)
T KOG1013|consen 215 EDEERGAILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFY-DI 293 (362)
T ss_pred chhhccceeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccc-cC
Confidence 35789999999999999999999999999999999999999999999998777677899999999999999999999 79
Q ss_pred CcccCCCceEEEEEEEcCCCCC-cceeeEEecCccc
Q psy12136 192 SETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL 226 (399)
Q Consensus 192 ~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l 226 (399)
.+.+|....+.|.|||++..+. +++|-+...+...
T Consensus 294 ~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~rr 329 (362)
T KOG1013|consen 294 GPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYRR 329 (362)
T ss_pred CccchhcceEEEeecccCCCcCccCCCccccccccc
Confidence 9999999999999999999877 9999876655443
No 205
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.37 E-value=9.4e-13 Score=146.00 Aligned_cols=102 Identities=21% Similarity=0.172 Sum_probs=85.6
Q ss_pred ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCC
Q psy12136 272 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 351 (399)
Q Consensus 272 ~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~ 351 (399)
-|.|.|+|++|.||. +..+.+||||++.++. ..++||++++++.||+|||.|+|.+..+. .+..|+|+|||+|.
T Consensus 1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~---~~~~kTkvvk~~~nP~Wne~f~~~~~~p~-~~~~l~iev~d~d~ 2052 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN---GPPRQTKVVSHSSSPEWKEGFTWAFDSPP-KGQKLHISCKSKNT 2052 (2102)
T ss_pred CcceEEEEeeccccc--cccCCCCCeEEEEECC---CCcccccccCCCCCCCcccceeeeecCCC-CCCceEEEEEecCc
Confidence 589999999999997 4578899999999963 25789999999999999999998876332 23679999999999
Q ss_pred CCCCeeeEEEEEccCC--CCCcchhhhhhhc
Q psy12136 352 GKSNDYLGCLELCCNS--KGDRLRHWVDMMK 380 (399)
Q Consensus 352 ~~~d~~lG~~~i~l~~--~~~~~~~w~~l~~ 380 (399)
+++ +.||++.|++.. .+..+..||.|..
T Consensus 2053 f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~ 2082 (2102)
T PLN03200 2053 FGK-SSLGKVTIQIDRVVMEGTYSGEYSLNP 2082 (2102)
T ss_pred cCC-CCCceEEEEHHHHhcCceeeeeeecCc
Confidence 864 599999999986 3567778888885
No 206
>KOG1328|consensus
Probab=99.36 E-value=5.5e-13 Score=131.18 Aligned_cols=116 Identities=34% Similarity=0.518 Sum_probs=102.7
Q ss_pred CCCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCC--CCceEecccccCCCCCeecceEEe
Q psy12136 111 QADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK--TSHRLRTKTCLRTINPEFHEKLTF 188 (399)
Q Consensus 111 ~~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~--~~~~~rT~~~~~t~nP~wne~f~f 188 (399)
......|.+.+.+.|....++|.|.|+-|+++.+.|.+|.+||||.|.+.|... .-..+||+|+++|+||+|+|+|.|
T Consensus 928 la~~~fg~lsvr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeF 1007 (1103)
T KOG1328|consen 928 LADHQFGVLSVRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEF 1007 (1103)
T ss_pred HhhCcCCceEEEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheee
Confidence 344567889999999999999999999999999999999999999999988443 234689999999999999999999
Q ss_pred ceeCcccCC--CceEEEEEEEcCCCCC-cceeeEEecCcccC
Q psy12136 189 YSVSETDLS--LQSLHILVLDDDKYGH-DFLGEARFPLNRLR 227 (399)
Q Consensus 189 ~~v~~~~l~--~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~ 227 (399)
.|+++... ...|.|+|+|+|-.+. ||-|++.+.|+.+.
T Consensus 1008 -sVp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1008 -SVPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred -ecCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 58877665 4789999999999988 99999999998875
No 207
>KOG1011|consensus
Probab=99.35 E-value=9.1e-13 Score=128.14 Aligned_cols=105 Identities=27% Similarity=0.524 Sum_probs=92.5
Q ss_pred ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCC
Q psy12136 272 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 351 (399)
Q Consensus 272 ~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~ 351 (399)
...++++|++|.+|.+.|..|++||||.+.. ++.+++|+++.+.+||+|||.|.|.+... ...|+++|||.|.
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv----~ktkrrtrti~~~lnpvw~ekfhfechns---tdrikvrvwded~ 366 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQV----GKTKRRTRTIHQELNPVWNEKFHFECHNS---TDRIKVRVWDEDN 366 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEee----cccchhhHhhhhccchhhhhheeeeecCC---CceeEEEEecCcc
Confidence 4679999999999999999999999999998 45889999999999999999999999743 4789999999884
Q ss_pred C-----------CCCeeeEEEEEccCCCCCcchhhhhhhcCCC
Q psy12136 352 G-----------KSNDYLGCLELCCNSKGDRLRHWVDMMKYPD 383 (399)
Q Consensus 352 ~-----------~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~ 383 (399)
. ..|+|||+..|.+.....+.+-||+|-.+-+
T Consensus 367 dlksklrqkl~resddflgqtvievrtlsgemdvwynlekrtd 409 (1283)
T KOG1011|consen 367 DLKSKLRQKLTRESDDFLGQTVIEVRTLSGEMDVWYNLEKRTD 409 (1283)
T ss_pred cHHHHHHHHhhhcccccccceeEEEEecccchhhhcchhhccc
Confidence 2 4689999999999988888999998876544
No 208
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.32 E-value=1.5e-11 Score=95.62 Aligned_cols=96 Identities=33% Similarity=0.547 Sum_probs=79.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCC
Q psy12136 131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK 210 (399)
Q Consensus 131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~ 210 (399)
.|.|.|++|++|......+..+|||++.+.+.. ....+|+++.++.||.|||+|.|. +.... ...|.|+|||.+.
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~--~~~~~T~~~~~~~~P~w~e~~~~~-~~~~~--~~~l~i~v~~~~~ 75 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDP--KEKKKTKVVKNTLNPVWNETFEFE-VPPPE--LAELEIEVYDKDR 75 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc--cceEeeeEecCCCCCcccceEEEE-ecCcc--cCEEEEEEEecCC
Confidence 378999999999988766778999999997532 257899999999999999999994 44332 5789999999998
Q ss_pred CCC-cceeeEEecCcccCCCcc
Q psy12136 211 YGH-DFLGEARFPLNRLRPHIS 231 (399)
Q Consensus 211 ~~~-~~lG~~~i~l~~l~~~~~ 231 (399)
.+. .++|.+.+++.++..+..
T Consensus 76 ~~~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 76 FGRDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred ccCCceeEEEEEEHHHcccCcc
Confidence 876 999999999998876543
No 209
>KOG0905|consensus
Probab=99.31 E-value=1.7e-12 Score=133.56 Aligned_cols=112 Identities=26% Similarity=0.351 Sum_probs=101.0
Q ss_pred cccceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEE-ec
Q psy12136 256 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIE-TK 333 (399)
Q Consensus 256 ~~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~-v~ 333 (399)
....|+|++++.|. .+.|+|.|..+++|+....+..+|||||.++.++.++ .++||+++++|+||.|||...|. ++
T Consensus 1509 ~~iggqV~LsIsY~--~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p 1586 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISYN--NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFP 1586 (1639)
T ss_pred cccCceEEEEEEEc--CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCc
Confidence 45678999999998 7999999999999987777788999999999998877 89999999999999999999998 66
Q ss_pred cCcccccEEEEEEEeCCCCCCCeeeEEEEEccCCCC
Q psy12136 334 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG 369 (399)
Q Consensus 334 ~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~ 369 (399)
.+.+.++.|++.||..+....+.+||.+.|+|....
T Consensus 1587 ~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~ 1622 (1639)
T KOG0905|consen 1587 KEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVD 1622 (1639)
T ss_pred hhhhhhheeeeeeecccceeeeeeeeeeecchhhcc
Confidence 667777999999999998889999999999998744
No 210
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.31 E-value=2.3e-11 Score=94.64 Aligned_cols=97 Identities=37% Similarity=0.466 Sum_probs=80.0
Q ss_pred eEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCC
Q psy12136 274 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 353 (399)
Q Consensus 274 ~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~ 353 (399)
.+.+.|++|++|......+..+|||++++.... ...++|+++.++.||.|||.|.|.+.... ...|.|+|||.+..+
T Consensus 1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~-~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~~l~i~v~~~~~~~ 77 (101)
T smart00239 1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDP-KEKKKTKVVKNTLNPVWNETFEFEVPPPE--LAELEIEVYDKDRFG 77 (101)
T ss_pred CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc-cceEeeeEecCCCCCcccceEEEEecCcc--cCEEEEEEEecCCcc
Confidence 367899999999887666679999999997532 25799999999999999999999987432 578999999999877
Q ss_pred CCeeeEEEEEccCCCCCcch
Q psy12136 354 SNDYLGCLELCCNSKGDRLR 373 (399)
Q Consensus 354 ~d~~lG~~~i~l~~~~~~~~ 373 (399)
.+.+||.+.+++.....+..
T Consensus 78 ~~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 78 RDDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred CCceeEEEEEEHHHcccCcc
Confidence 78999999999876543333
No 211
>KOG1327|consensus
Probab=99.27 E-value=5.5e-11 Score=115.85 Aligned_cols=206 Identities=25% Similarity=0.307 Sum_probs=150.1
Q ss_pred CCCCCCCCCcEEEEEEec--------------CCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136 144 AMDIHGTSDPFCKLNLVP--------------LTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 209 (399)
Q Consensus 144 ~~~~~~~~dpyv~v~l~~--------------~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~ 209 (399)
+.+.....+|.|.+.... +..+....+|.++.+.+||.|-+.|... ...+. .+.|+|.+++.+
T Consensus 4 ~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~~~~p~f~~~~~l~-y~fE~--vQ~l~~~~~~~~ 80 (529)
T KOG1327|consen 4 AYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRNVLNPFFTKKFLLQ-YRFEK--VQLLRFEVYDID 80 (529)
T ss_pred ccccccccCceeeeeccCCCccccccccccccccccccccceeeeeccCCccceeeechh-heeee--eeeEEEEEeecC
Confidence 344455566666665421 2223456699999999999999988763 22232 378999999876
Q ss_pred CC----CC-cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeeccceeEEEEEEeeec
Q psy12136 210 KY----GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTN 284 (399)
Q Consensus 210 ~~----~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~~~~~L~v~v~~a~~ 284 (399)
.. .. +|+|++...+.++.........+.+... .....|.|.+.+.-.........-.++|++
T Consensus 81 ~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~-------------~~~~~g~iti~aee~~~~~~~~~~~~~~~~ 147 (529)
T KOG1327|consen 81 SRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPG-------------KNAGSGTITISAEEDESDNDVVQFSFRAKN 147 (529)
T ss_pred CccCCcchhcccceeeeehhhhhhhhhhhhhhhcccC-------------ccCCcccEEEEeecccccCceeeeeeeeee
Confidence 54 34 9999999999998765443332223211 235688888887665555566666778999
Q ss_pred CCCCCCCCCCCcEEEEEEecCCCC--ceEeecceeCCCCceecceEEEEeccCccc----ccEEEEEEEeCCCCCCCeee
Q psy12136 285 LIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS----KQTLVITVWDKDYGKSNDYL 358 (399)
Q Consensus 285 L~~~~~~g~~dpyV~v~l~~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l~----~~~l~i~V~d~~~~~~d~~l 358 (399)
|...+..+++|||..++-..+.+. ..++|.+++++++|.|.+ |.+....++ +..++|.+||++..+++++|
T Consensus 148 ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~---~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~i 224 (529)
T KOG1327|consen 148 LDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP---FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLI 224 (529)
T ss_pred cCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc---cccchhhhcccCCCCceEEEEeccCCCCCcCce
Confidence 999999999999999997643333 789999999999999998 555544444 37799999999999889999
Q ss_pred EEEEEccCCC
Q psy12136 359 GCLELCCNSK 368 (399)
Q Consensus 359 G~~~i~l~~~ 368 (399)
|++.-.+...
T Consensus 225 g~~~tt~~~~ 234 (529)
T KOG1327|consen 225 GKFQTTLSEL 234 (529)
T ss_pred eEecccHHHh
Confidence 9999887654
No 212
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.27 E-value=4.3e-11 Score=92.79 Aligned_cols=99 Identities=35% Similarity=0.602 Sum_probs=81.4
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 211 (399)
Q Consensus 132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~ 211 (399)
|.|.|++|++|.........+|||.+.+.+ ....+|+++.++.||.|||.|.|. +... ....|.|+||+.+..
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~----~~~~~T~~~~~~~~P~w~~~~~~~-~~~~--~~~~l~i~v~~~~~~ 73 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG----KQKFKTKVVKNTLNPVWNETFEFP-VLDP--ESDTLTVEVWDKDRF 73 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc----CceEecceeCCCCCCcccceEEEE-ccCC--CCCEEEEEEEecCCC
Confidence 579999999999877677899999999963 377899999999999999999993 4442 357899999999988
Q ss_pred CC-cceeeEEecCcccC-CCcceeEEEe
Q psy12136 212 GH-DFLGEARFPLNRLR-PHISRDLCLN 237 (399)
Q Consensus 212 ~~-~~lG~~~i~l~~l~-~~~~~~~~~~ 237 (399)
+. .+||.+.+++.++. .......|++
T Consensus 74 ~~~~~ig~~~~~l~~l~~~~~~~~~~~~ 101 (102)
T cd00030 74 SKDDFLGEVEIPLSELLDSGKEGELWLP 101 (102)
T ss_pred CCCceeEEEEEeHHHhhhcCCcCcceec
Confidence 76 99999999999987 4444445544
No 213
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.25 E-value=6.9e-11 Score=91.59 Aligned_cols=89 Identities=40% Similarity=0.600 Sum_probs=76.6
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCC
Q psy12136 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 354 (399)
Q Consensus 275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~ 354 (399)
|.|.|++|++|......+..+|||.+.+.+ ...++|.+..++.||.||+.|.|.+... ....|.|.||+++..+.
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~---~~~~~T~~~~~~~~P~w~~~~~~~~~~~--~~~~l~i~v~~~~~~~~ 75 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG---KQKFKTKVVKNTLNPVWNETFEFPVLDP--ESDTLTVEVWDKDRFSK 75 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc---CceEecceeCCCCCCcccceEEEEccCC--CCCEEEEEEEecCCCCC
Confidence 578999999998776777899999999964 2778999999999999999999999742 35789999999998877
Q ss_pred CeeeEEEEEccCCC
Q psy12136 355 NDYLGCLELCCNSK 368 (399)
Q Consensus 355 d~~lG~~~i~l~~~ 368 (399)
+.+||++.+.+...
T Consensus 76 ~~~ig~~~~~l~~l 89 (102)
T cd00030 76 DDFLGEVEIPLSEL 89 (102)
T ss_pred CceeEEEEEeHHHh
Confidence 89999999998763
No 214
>PLN02223 phosphoinositide phospholipase C
Probab=99.22 E-value=6.4e-11 Score=116.46 Aligned_cols=108 Identities=18% Similarity=0.237 Sum_probs=84.7
Q ss_pred eeEEEEEEeeecCCCC-----CCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcccccEEEEEE
Q psy12136 273 RALIVNLIKCTNLIPM-----DSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITV 346 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~-----~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V 346 (399)
..|.|+|+.|.+++.. +.....||||+|.+.+-... .+++|.+..++.||+|||+|.|.+...++ +.|.|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PEL--AlLrf~V 486 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDL--ALISFEV 486 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCc--eEEEEEE
Confidence 5789999999987521 12345799999999753322 56778888888999999999999987665 4899999
Q ss_pred EeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCC
Q psy12136 347 WDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPD 383 (399)
Q Consensus 347 ~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~ 383 (399)
+|+|..+.++++|+..|++.+...+++|- .|+..-+
T Consensus 487 ~D~D~~~~ddfiGQ~~LPv~~Lr~GyR~V-pL~~~~g 522 (537)
T PLN02223 487 YDYEVSTADAFCGQTCLPVSELIEGIRAV-PLYDERG 522 (537)
T ss_pred EecCCCCCCcEEEEEecchHHhcCCceeE-eccCCCc
Confidence 99998888999999999999877776543 4444433
No 215
>PLN02223 phosphoinositide phospholipase C
Probab=99.21 E-value=6.9e-11 Score=116.21 Aligned_cols=104 Identities=18% Similarity=0.278 Sum_probs=81.8
Q ss_pred CEEEEEEEEecCCCCC-----CCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEE
Q psy12136 130 CSLHVTLHRAKGLRAM-----DIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHIL 204 (399)
Q Consensus 130 ~~L~V~V~~a~~L~~~-----~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~ 204 (399)
..|.|+|+.|++++.. +....+||||+|.+.+-.....+++|++..++.||+|||+|.| .+...++ ..|+|.
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F-~i~~PEL--AlLrf~ 485 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTF-PLTYPDL--ALISFE 485 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEE-EEEccCc--eEEEEE
Confidence 5799999999998521 2234589999999975333445678888888999999999999 4655554 689999
Q ss_pred EEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136 205 VLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 239 (399)
Q Consensus 205 V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~ 239 (399)
|+|+|..+. +|+|++.+|+..|..+- .+++|.
T Consensus 486 V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~ 518 (537)
T PLN02223 486 VYDYEVSTADAFCGQTCLPVSELIEGI---RAVPLY 518 (537)
T ss_pred EEecCCCCCCcEEEEEecchHHhcCCc---eeEecc
Confidence 999998877 99999999999998764 334564
No 216
>PLN02952 phosphoinositide phospholipase C
Probab=99.17 E-value=3.8e-10 Score=113.29 Aligned_cols=106 Identities=25% Similarity=0.341 Sum_probs=83.8
Q ss_pred CCEEEEEEEEecCCCCCC------CCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEE
Q psy12136 129 TCSLHVTLHRAKGLRAMD------IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLH 202 (399)
Q Consensus 129 ~~~L~V~V~~a~~L~~~~------~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~ 202 (399)
...|.|+|+.|.+|+... .....||||+|.+.+-.....+++|+++.++.||+|||+|.|. +...++ ..|+
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~-i~~PEL--Allr 545 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFP-LTVPEL--ALLR 545 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEE-EEcCCc--cEEE
Confidence 368999999999885321 1134699999999753334567899999999999999999994 655554 6899
Q ss_pred EEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136 203 ILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK 240 (399)
Q Consensus 203 ~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~ 240 (399)
|.|||+|..+. +++|++.+|+..|..+- .+++|..
T Consensus 546 f~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~ 581 (599)
T PLN02952 546 IEVREYDMSEKDDFGGQTCLPVSELRPGI---RSVPLHD 581 (599)
T ss_pred EEEEecCCCCCCCeEEEEEcchhHhcCCc---eeEeCcC
Confidence 99999998877 99999999999998774 3667753
No 217
>PLN02952 phosphoinositide phospholipase C
Probab=99.12 E-value=3.5e-10 Score=113.57 Aligned_cols=110 Identities=24% Similarity=0.222 Sum_probs=86.3
Q ss_pred ceeEEEEEEeeecCCCCC------CCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcccccEEEE
Q psy12136 272 KRALIVNLIKCTNLIPMD------SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVI 344 (399)
Q Consensus 272 ~~~L~v~v~~a~~L~~~~------~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i 344 (399)
...|.|.|+.|.+++... .....||||+|.+.+-... .+++|+++.++.||+|||+|.|.+...++ +.|.|
T Consensus 469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PEL--Allrf 546 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPEL--ALLRI 546 (599)
T ss_pred cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCc--cEEEE
Confidence 357999999998875321 1233599999998753322 67899999999999999999999886665 48999
Q ss_pred EEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCC
Q psy12136 345 TVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDH 384 (399)
Q Consensus 345 ~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~ 384 (399)
.|||+|..+.++++|++.|++++...++. |..|+..-+.
T Consensus 547 ~V~D~D~~~~ddfiGq~~lPv~~Lr~GyR-~VpL~~~~G~ 585 (599)
T PLN02952 547 EVREYDMSEKDDFGGQTCLPVSELRPGIR-SVPLHDKKGE 585 (599)
T ss_pred EEEecCCCCCCCeEEEEEcchhHhcCCce-eEeCcCCCCC
Confidence 99999988889999999999998776664 5566544443
No 218
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.11 E-value=3e-10 Score=113.89 Aligned_cols=109 Identities=21% Similarity=0.279 Sum_probs=86.1
Q ss_pred ceeEEEEEEeeecCCCC------CCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCcccccEEEE
Q psy12136 272 KRALIVNLIKCTNLIPM------DSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVI 344 (399)
Q Consensus 272 ~~~L~v~v~~a~~L~~~------~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i 344 (399)
...|.|+|+.+.+++.. +.....||||+|.+.+-... .+++|++..++.||+|||+|.|.+..+++ +.|.|
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPEL--AllRf 545 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPEL--ALLRV 545 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCce--eEEEE
Confidence 35799999999987522 22334799999999753322 56788898899999999999999987766 48999
Q ss_pred EEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCC
Q psy12136 345 TVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPD 383 (399)
Q Consensus 345 ~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~ 383 (399)
.|+|+|..+.++++|+..|++.+..++++|- .|+..-+
T Consensus 546 ~V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR~V-~L~~~~G 583 (598)
T PLN02230 546 EVHEHDINEKDDFGGQTCLPVSEIRQGIHAV-PLFNRKG 583 (598)
T ss_pred EEEECCCCCCCCEEEEEEcchHHhhCccceE-eccCCCc
Confidence 9999998889999999999999887777764 3444333
No 219
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.10 E-value=3.9e-10 Score=113.06 Aligned_cols=105 Identities=21% Similarity=0.296 Sum_probs=82.2
Q ss_pred CCEEEEEEEEecCCCCC------CCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEE
Q psy12136 129 TCSLHVTLHRAKGLRAM------DIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLH 202 (399)
Q Consensus 129 ~~~L~V~V~~a~~L~~~------~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~ 202 (399)
...|.|+|+.+.+++.. +....+||||+|.+.+-.....+++|++..++.||+|||+|.|. +...+| ..|+
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~-l~vPEL--AllR 544 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFP-LAVPEL--ALLR 544 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEE-EEcCce--eEEE
Confidence 36899999999987521 22235799999999653333456789999999999999999994 555555 7899
Q ss_pred EEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136 203 ILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 239 (399)
Q Consensus 203 ~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~ 239 (399)
|.|+|+|.... +|+|+..+|+..|..+-. .++|.
T Consensus 545 f~V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR---~V~L~ 579 (598)
T PLN02230 545 VEVHEHDINEKDDFGGQTCLPVSEIRQGIH---AVPLF 579 (598)
T ss_pred EEEEECCCCCCCCEEEEEEcchHHhhCccc---eEecc
Confidence 99999998766 999999999999987643 34554
No 220
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=99.10 E-value=1.4e-10 Score=85.02 Aligned_cols=100 Identities=20% Similarity=0.300 Sum_probs=81.7
Q ss_pred EEEEEeeecCCCCCC-CCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCC
Q psy12136 276 IVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 354 (399)
Q Consensus 276 ~v~v~~a~~L~~~~~-~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~ 354 (399)
-+++++|++|.-... ...+..||+--+.-. +....||.+++++.||+|+|+|.|.+...++....|.|.|+. .+.+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~-kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLP-KPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecC-CCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence 368899999976544 334566888666531 127899999999999999999999999989998999999998 5568
Q ss_pred CeeeEEEEEccCCCC-Ccchhhhhh
Q psy12136 355 NDYLGCLELCCNSKG-DRLRHWVDM 378 (399)
Q Consensus 355 d~~lG~~~i~l~~~~-~~~~~w~~l 378 (399)
++.||.+.+++++.+ ++..||.++
T Consensus 79 Ke~iG~~sL~l~s~geeE~~HW~e~ 103 (103)
T cd08684 79 KRTIGECSLSLRTLSTQETDHWLEI 103 (103)
T ss_pred cceeeEEEeecccCCHHHhhhhhcC
Confidence 899999999999865 789999764
No 221
>PLN02270 phospholipase D alpha
Probab=99.09 E-value=8.9e-10 Score=112.80 Aligned_cols=124 Identities=20% Similarity=0.304 Sum_probs=97.9
Q ss_pred CCEEEEEEEEecCCCCCC------------------CCCCCCcEEEEEEecCCCCCceEecccccCC-CCCeecceEEec
Q psy12136 129 TCSLHVTLHRAKGLRAMD------------------IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRT-INPEFHEKLTFY 189 (399)
Q Consensus 129 ~~~L~V~V~~a~~L~~~~------------------~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t-~nP~wne~f~f~ 189 (399)
++.|.|+|++|++|+..+ ..+.+||||.|.+. +....||+++.+. .||+|||.|.++
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~----~a~v~rtr~~~~~~~~p~w~e~f~i~ 82 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE----KARVGRTRKIENEPKNPRWYESFHIY 82 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC----CcEEEEEeecCCCCCCCccccceEEe
Confidence 578999999999998531 12567999999996 4678899999885 599999999884
Q ss_pred eeCcccCCCceEEEEEEEcCCCCCcceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeee
Q psy12136 190 SVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS 269 (399)
Q Consensus 190 ~v~~~~l~~~~L~~~V~d~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~ 269 (399)
+... ...+.|.|.|.+.++..+||.+.||..++..+...+.|+++......+ ......|++++.|.
T Consensus 83 -~ah~---~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p----------~~~~~~~~~~~~f~ 148 (808)
T PLN02270 83 -CAHM---ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNP----------IHGGSKIHVKLQYF 148 (808)
T ss_pred -eccC---cceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCc----------CCCCCEEEEEEEEE
Confidence 4333 378999999999999999999999999999988888888886532211 12334788888886
Q ss_pred c
Q psy12136 270 T 270 (399)
Q Consensus 270 ~ 270 (399)
+
T Consensus 149 ~ 149 (808)
T PLN02270 149 E 149 (808)
T ss_pred E
Confidence 5
No 222
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.08 E-value=7e-10 Score=111.08 Aligned_cols=102 Identities=19% Similarity=0.164 Sum_probs=82.5
Q ss_pred ceeEEEEEEeeecCCC--C----CCCCCCCcEEEEEEecCCC-CceEeecceeCCCCceecceEEEEeccCcccccEEEE
Q psy12136 272 KRALIVNLIKCTNLIP--M----DSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVI 344 (399)
Q Consensus 272 ~~~L~v~v~~a~~L~~--~----~~~g~~dpyV~v~l~~~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i 344 (399)
...|.|+|+.+.+++. . +.....||||+|.+.+-.. ..+++|+++.++.||+|||+|.|.+..+++ +-|.|
T Consensus 451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeL--AllRf 528 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPEL--ALLRL 528 (581)
T ss_pred cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCce--eEEEE
Confidence 3578999999987531 1 1234579999999975332 267889999999999999999999887666 58999
Q ss_pred EEEeCCCCCCCeeeEEEEEccCCCCCcchhh
Q psy12136 345 TVWDKDYGKSNDYLGCLELCCNSKGDRLRHW 375 (399)
Q Consensus 345 ~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w 375 (399)
.|+|+|..+.+++||+..|+++...++++|-
T Consensus 529 ~V~d~D~~~~ddfigq~~lPv~~Lr~GyR~V 559 (581)
T PLN02222 529 EVHEYDMSEKDDFGGQTCLPVWELSQGIRAF 559 (581)
T ss_pred EEEECCCCCCCcEEEEEEcchhhhhCccceE
Confidence 9999998888999999999999988777764
No 223
>KOG1031|consensus
Probab=99.07 E-value=3.3e-10 Score=109.43 Aligned_cols=116 Identities=23% Similarity=0.310 Sum_probs=93.5
Q ss_pred eeEEEEEEeeecCCCCCC-CCCCCcEEEEEEecCCCCceEeecceeCCCCceec-ceEEEEeccCcccccEEEEEEEeCC
Q psy12136 273 RALIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFN-EEFAIETKITELSKQTLVITVWDKD 350 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~-~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wn-e~f~f~v~~~~l~~~~l~i~V~d~~ 350 (399)
+.|-|.|..||+||.||. ....|.||+|.+.. ..+||.|..+++||.|| +-|.|.|...++.+..|+|+++|+|
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n----~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~d 78 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN----TTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHD 78 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecc----cceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccc
Confidence 578899999999999987 45689999999954 88999999999999999 6899999988999999999999999
Q ss_pred CCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCC
Q psy12136 351 YGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 394 (399)
Q Consensus 351 ~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~ 394 (399)
..+.++-||.+.|+++... ++.--+...-.+..+..|.++.+
T Consensus 79 tysandaigkv~i~idpl~--~e~aaqavhgkgtvisgw~pifd 120 (1169)
T KOG1031|consen 79 TYSANDAIGKVNIDIDPLC--LEEAAQAVHGKGTVISGWFPIFD 120 (1169)
T ss_pred ccccccccceeeeccChHH--HHhHHhhhcCCceEEeeeeecce
Confidence 9999999999999988421 11111223334555666666543
No 224
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.05 E-value=1e-09 Score=109.88 Aligned_cols=105 Identities=22% Similarity=0.284 Sum_probs=81.5
Q ss_pred CEEEEEEEEecCCC--CC----CCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEE
Q psy12136 130 CSLHVTLHRAKGLR--AM----DIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHI 203 (399)
Q Consensus 130 ~~L~V~V~~a~~L~--~~----~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~ 203 (399)
..|.|+|+.+.+++ .. +....+||||+|.+.+......++||+++.++.||+|||+|.|. +...++ ..|+|
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~-i~~PeL--AllRf 528 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFP-LTVPEL--ALLRL 528 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEE-EEcCce--eEEEE
Confidence 57999999998753 11 12246799999999653333467899999999999999999994 655555 78999
Q ss_pred EEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeecc
Q psy12136 204 LVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK 240 (399)
Q Consensus 204 ~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~ 240 (399)
.|+|+|..+. +|+|++.+|+..|..+=. .++|..
T Consensus 529 ~V~d~D~~~~ddfigq~~lPv~~Lr~GyR---~V~L~~ 563 (581)
T PLN02222 529 EVHEYDMSEKDDFGGQTCLPVWELSQGIR---AFPLHS 563 (581)
T ss_pred EEEECCCCCCCcEEEEEEcchhhhhCccc---eEEccC
Confidence 9999998776 999999999999987632 345543
No 225
>PLN02228 Phosphoinositide phospholipase C
Probab=99.04 E-value=2.9e-09 Score=106.39 Aligned_cols=104 Identities=22% Similarity=0.377 Sum_probs=81.0
Q ss_pred CEEEEEEEEecCCCC---CC---CCCCCCcEEEEEEecCCCCCceEecccccCCCCCee-cceEEeceeCcccCCCceEE
Q psy12136 130 CSLHVTLHRAKGLRA---MD---IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEF-HEKLTFYSVSETDLSLQSLH 202 (399)
Q Consensus 130 ~~L~V~V~~a~~L~~---~~---~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~w-ne~f~f~~v~~~~l~~~~L~ 202 (399)
..|.|+|+.|++|+. .+ .....||||+|.+.+......++||+++.++.||+| ||+|.|. +...++ ..|+
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~-~~~pEL--A~lR 507 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQ-LRVPEL--ALLW 507 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEE-EEcCce--eEEE
Confidence 479999999998732 11 123489999999975333456789999988899999 9999994 555555 6899
Q ss_pred EEEEEcCCCCC-cceeeEEecCcccCCCcceeEEEeec
Q psy12136 203 ILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 239 (399)
Q Consensus 203 ~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~ 239 (399)
|.|+|+|..+. +|+|++.+|+..|..+- ..++|.
T Consensus 508 f~V~D~d~~~~d~figq~~lPv~~Lr~GY---R~VpL~ 542 (567)
T PLN02228 508 FKVQDYDNDTQNDFAGQTCLPLPELKSGV---RAVRLH 542 (567)
T ss_pred EEEEeCCCCCCCCEEEEEEcchhHhhCCe---eEEEcc
Confidence 99999997766 99999999999997653 234564
No 226
>KOG0169|consensus
Probab=99.03 E-value=5.4e-10 Score=112.12 Aligned_cols=100 Identities=27% Similarity=0.378 Sum_probs=84.1
Q ss_pred eEEEEEEeeecCCCCCC----CCCCCcEEEEEEecCCCC-ceEeec-ceeCCCCceecceEEEEeccCcccccEEEEEEE
Q psy12136 274 ALIVNLIKCTNLIPMDS----NGFSDPFIKLYLKPDLHK-RKYKTG-VKWKTLNPIFNEEFAIETKITELSKQTLVITVW 347 (399)
Q Consensus 274 ~L~v~v~~a~~L~~~~~----~g~~dpyV~v~l~~~~~~-~~~kT~-v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~ 347 (399)
.|.|.|+.+.++++... +..+||||.|.+.+-... .+.+|+ +..++.||.|+|+|+|.+..+++ +-|.|.|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL--AliRF~V~ 694 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL--ALIRFEVH 694 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce--eEEEEEEE
Confidence 69999999997655432 345899999998754433 788999 56677999999999999987777 49999999
Q ss_pred eCCCCCCCeeeEEEEEccCCCCCcchhh
Q psy12136 348 DKDYGKSNDYLGCLELCCNSKGDRLRHW 375 (399)
Q Consensus 348 d~~~~~~d~~lG~~~i~l~~~~~~~~~w 375 (399)
|+|..++|+|+|+.+|++++..++++|-
T Consensus 695 d~d~~~~ddF~GQ~tlP~~~L~~GyRhV 722 (746)
T KOG0169|consen 695 DYDYIGKDDFIGQTTLPVSELRQGYRHV 722 (746)
T ss_pred ecCCCCcccccceeeccHHHhhCceeee
Confidence 9999999999999999999988888875
No 227
>PLN02228 Phosphoinositide phospholipase C
Probab=98.99 E-value=2.2e-09 Score=107.26 Aligned_cols=111 Identities=22% Similarity=0.244 Sum_probs=87.3
Q ss_pred ceeEEEEEEeeecCCC---CC---CCCCCCcEEEEEEecCCCC-ceEeecceeCCCCcee-cceEEEEeccCcccccEEE
Q psy12136 272 KRALIVNLIKCTNLIP---MD---SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIF-NEEFAIETKITELSKQTLV 343 (399)
Q Consensus 272 ~~~L~v~v~~a~~L~~---~~---~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~w-ne~f~f~v~~~~l~~~~l~ 343 (399)
...|.|+|+.|.+|+. .+ .....||||+|.+.+.... .+++|+++.++.||+| ||+|.|.+...++ +-|.
T Consensus 430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pEL--A~lR 507 (567)
T PLN02228 430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPEL--ALLW 507 (567)
T ss_pred CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCce--eEEE
Confidence 3479999999998732 11 2234799999998754322 6789999988899999 9999999987666 4899
Q ss_pred EEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCc
Q psy12136 344 ITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK 385 (399)
Q Consensus 344 i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~ 385 (399)
|.|+|++..+.+++||+..|+++...++++|- .|+...+..
T Consensus 508 f~V~D~d~~~~d~figq~~lPv~~Lr~GYR~V-pL~~~~G~~ 548 (567)
T PLN02228 508 FKVQDYDNDTQNDFAGQTCLPLPELKSGVRAV-RLHDRAGKA 548 (567)
T ss_pred EEEEeCCCCCCCCEEEEEEcchhHhhCCeeEE-EccCCCCCC
Confidence 99999998888999999999999988777765 455554443
No 228
>KOG0169|consensus
Probab=98.97 E-value=3.6e-09 Score=106.28 Aligned_cols=98 Identities=23% Similarity=0.381 Sum_probs=80.6
Q ss_pred EEEEEEEEecCCCCC-CC---CCCCCcEEEEEEecCCCCCceEecc-cccCCCCCeecceEEeceeCcccCCCceEEEEE
Q psy12136 131 SLHVTLHRAKGLRAM-DI---HGTSDPFCKLNLVPLTKTSHRLRTK-TCLRTINPEFHEKLTFYSVSETDLSLQSLHILV 205 (399)
Q Consensus 131 ~L~V~V~~a~~L~~~-~~---~~~~dpyv~v~l~~~~~~~~~~rT~-~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V 205 (399)
.|.|.|+.+.++++. .. ...+||||.|.+.+-.....+++|+ +..++-||.|+|+|.| .++..+| ..|+|.|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F-~l~vPEL--AliRF~V 693 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEF-QLSVPEL--ALIRFEV 693 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEE-EEeccce--eEEEEEE
Confidence 699999999966543 22 2468999999986533345688999 5677899999999999 5777776 7899999
Q ss_pred EEcCCCCC-cceeeEEecCcccCCCcc
Q psy12136 206 LDDDKYGH-DFLGEARFPLNRLRPHIS 231 (399)
Q Consensus 206 ~d~~~~~~-~~lG~~~i~l~~l~~~~~ 231 (399)
+|+|..++ +|+|+..+|+..|..+-.
T Consensus 694 ~d~d~~~~ddF~GQ~tlP~~~L~~GyR 720 (746)
T KOG0169|consen 694 HDYDYIGKDDFIGQTTLPVSELRQGYR 720 (746)
T ss_pred EecCCCCcccccceeeccHHHhhCcee
Confidence 99999997 999999999999987643
No 229
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.94 E-value=3.2e-09 Score=81.63 Aligned_cols=85 Identities=16% Similarity=0.283 Sum_probs=68.4
Q ss_pred EEEEEEEecCCCCCC---CCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEc
Q psy12136 132 LHVTLHRAKGLRAMD---IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 208 (399)
Q Consensus 132 L~V~V~~a~~L~~~~---~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~ 208 (399)
|.|+|..|||+...+ ..+.+||||.+.+. ...+.||++ +.||.|||+|.| .|.. ...+.|.|||.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKve----d~~kaRTr~---srnd~WnE~F~i-~Vdk----~nEiel~VyDk 68 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVE----DVERARTKP---SRNDRWNEDFEI-PVEK----NNEEEVIVYDK 68 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEEC----CEEEEeccC---CCCCcccceEEE-EecC----CcEEEEEEEeC
Confidence 679999999998877 46789999999996 345788877 589999999999 4632 47899999998
Q ss_pred CCCCCcceeeEEecCcccCC
Q psy12136 209 DKYGHDFLGEARFPLNRLRP 228 (399)
Q Consensus 209 ~~~~~~~lG~~~i~l~~l~~ 228 (399)
.......||..-+.++++..
T Consensus 69 ~~~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 69 GGDQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred CCCeecceeeehhhHHHHHH
Confidence 65433778998888888764
No 230
>KOG1264|consensus
Probab=98.90 E-value=5.9e-09 Score=104.37 Aligned_cols=105 Identities=21% Similarity=0.426 Sum_probs=82.2
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCC-CceEecccccCCCCCeec-ceEEeceeCcccCCCceEEEEEEEc
Q psy12136 131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKT-SHRLRTKTCLRTINPEFH-EKLTFYSVSETDLSLQSLHILVLDD 208 (399)
Q Consensus 131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~-~~~~rT~~~~~t~nP~wn-e~f~f~~v~~~~l~~~~L~~~V~d~ 208 (399)
+|.|.|+.||.|+... .+.+.|||.|.+.+-.-. ...++|.++.+++||+|| |.|.| .|...++ ..|+|.|++.
T Consensus 1066 ~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftF-eI~nPe~--A~lRF~V~ee 1141 (1267)
T KOG1264|consen 1066 TLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTF-EIYNPEF--AFLRFVVYEE 1141 (1267)
T ss_pred EEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEE-EeeCCce--EEEEEEEecc
Confidence 6889999999999543 455779999999752222 345556678899999999 99999 5665554 7899999999
Q ss_pred CCCCC-cceeeEEecCcccCCCcceeEEEeecccC
Q psy12136 209 DKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHY 242 (399)
Q Consensus 209 ~~~~~-~~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 242 (399)
|.+++ .|||++.+|+..+..+= ..++|.+.|
T Consensus 1142 Dmfs~~~FiaqA~yPv~~ik~Gf---RsVpLkN~y 1173 (1267)
T KOG1264|consen 1142 DMFSDPNFLAQATYPVKAIKSGF---RSVPLKNGY 1173 (1267)
T ss_pred cccCCcceeeeeecchhhhhccc---eeeecccCc
Confidence 99999 99999999999987652 345565543
No 231
>KOG1031|consensus
Probab=98.87 E-value=7.1e-09 Score=100.37 Aligned_cols=94 Identities=27% Similarity=0.518 Sum_probs=84.5
Q ss_pred CEEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCceEecccccCCCCCeec-ceEEeceeCcccCCCceEEEEEEE
Q psy12136 130 CSLHVTLHRAKGLRAMDIH-GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFH-EKLTFYSVSETDLSLQSLHILVLD 207 (399)
Q Consensus 130 ~~L~V~V~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wn-e~f~f~~v~~~~l~~~~L~~~V~d 207 (399)
++|-|+|..||+|+-+|.. ...|.||.+.+. ...+||.+..+++||.|| +-|.| .|...++++..|++.+.|
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~-----n~t~ktdvf~kslnp~wnsdwfkf-evddadlqdeplqi~lld 76 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFA-----NTTFKTDVFLKSLNPQWNSDWFKF-EVDDADLQDEPLQIRLLD 76 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEec-----ccceehhhhhhhcCCcccccceEE-ecChhhhccCCeeEEEec
Confidence 5788999999999999875 568999999994 578999999999999999 56778 799999999999999999
Q ss_pred cCCCCC-cceeeEEecCcccCCC
Q psy12136 208 DDKYGH-DFLGEARFPLNRLRPH 229 (399)
Q Consensus 208 ~~~~~~-~~lG~~~i~l~~l~~~ 229 (399)
+|..+. +-||.+.|++..|...
T Consensus 77 ~dtysandaigkv~i~idpl~~e 99 (1169)
T KOG1031|consen 77 HDTYSANDAIGKVNIDIDPLCLE 99 (1169)
T ss_pred ccccccccccceeeeccChHHHH
Confidence 999998 9999999999988743
No 232
>PLN02270 phospholipase D alpha
Probab=98.84 E-value=1.2e-08 Score=104.79 Aligned_cols=108 Identities=18% Similarity=0.248 Sum_probs=87.1
Q ss_pred ceeEEEEEEeeecCCCCC------------------CCCCCCcEEEEEEecCCCCceEeecceeCC-CCceecceEEEEe
Q psy12136 272 KRALIVNLIKCTNLIPMD------------------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKT-LNPIFNEEFAIET 332 (399)
Q Consensus 272 ~~~L~v~v~~a~~L~~~~------------------~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t-~nP~wne~f~f~v 332 (399)
-|.|.++|++|++|+.++ ..+.+||||.|.+. +....+|+++.+. .||.|||+|...+
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~---~a~v~rtr~~~~~~~~p~w~e~f~i~~ 83 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE---KARVGRTRKIENEPKNPRWYESFHIYC 83 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC---CcEEEEEeecCCCCCCCccccceEEee
Confidence 378999999999998531 13568999999995 2378899999885 5999999999888
Q ss_pred ccCcccccEEEEEEEeCCCCCCCeeeEEEEEccCC--CCCcchhhhhhhcCCCCce
Q psy12136 333 KITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS--KGDRLRHWVDMMKYPDHKH 386 (399)
Q Consensus 333 ~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~--~~~~~~~w~~l~~~p~~~~ 386 (399)
... -..|.|+|.|.+.++ ..+||.+.|++.. .+..++.|++++..-+++.
T Consensus 84 ah~---~~~v~f~vkd~~~~g-~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~ 135 (808)
T PLN02270 84 AHM---ASNIIFTVKDDNPIG-ATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPI 135 (808)
T ss_pred ccC---cceEEEEEecCCccC-ceEEEEEEEEHHHhcCCCccccEEeccCCCCCcC
Confidence 632 368999999999886 5699999999886 4667888998887766554
No 233
>KOG1264|consensus
Probab=98.75 E-value=3.8e-08 Score=98.79 Aligned_cols=93 Identities=22% Similarity=0.294 Sum_probs=76.1
Q ss_pred eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCC--CceEeecceeCCCCceec-ceEEEEeccCcccccEEEEEEEeC
Q psy12136 273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH--KRKYKTGVKWKTLNPIFN-EEFAIETKITELSKQTLVITVWDK 349 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~--~~~~kT~v~~~t~nP~wn-e~f~f~v~~~~l~~~~l~i~V~d~ 349 (399)
-+|.|.|+.||+|+.. ..+...|||+|.+.+..- ++.++|.|+.+.+||+|| |+|+|.|..+++ +-|.|.|+|.
T Consensus 1065 ~~lsv~vigaRHL~k~-gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~--A~lRF~V~ee 1141 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKL-GRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEF--AFLRFVVYEE 1141 (1267)
T ss_pred eEEEEEEeeccccccC-CCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCce--EEEEEEEecc
Confidence 5688999999999843 445577999999975332 255566667788999999 999999986655 5899999999
Q ss_pred CCCCCCeeeEEEEEccCCC
Q psy12136 350 DYGKSNDYLGCLELCCNSK 368 (399)
Q Consensus 350 ~~~~~d~~lG~~~i~l~~~ 368 (399)
|+++...|||+++.++.++
T Consensus 1142 Dmfs~~~FiaqA~yPv~~i 1160 (1267)
T KOG1264|consen 1142 DMFSDPNFLAQATYPVKAI 1160 (1267)
T ss_pred cccCCcceeeeeecchhhh
Confidence 9999888999999998863
No 234
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.74 E-value=3.1e-08 Score=76.23 Aligned_cols=84 Identities=15% Similarity=0.228 Sum_probs=67.2
Q ss_pred EEEEEEeeecCCCCC---CCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCC
Q psy12136 275 LIVNLIKCTNLIPMD---SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 351 (399)
Q Consensus 275 L~v~v~~a~~L~~~~---~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~ 351 (399)
|.|+|..++|+...+ ..+.+||||.+++.+ ..+.+|++ +.||.|||.|.|++. ....+.|.|||...
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved---~~kaRTr~---srnd~WnE~F~i~Vd----k~nEiel~VyDk~~ 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVED---VERARTKP---SRNDRWNEDFEIPVE----KNNEEEVIVYDKGG 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECC---EEEEeccC---CCCCcccceEEEEec----CCcEEEEEEEeCCC
Confidence 678999999998776 467789999999952 25888886 489999999999994 25789999999864
Q ss_pred CCCCeeeEEEEEccCCCC
Q psy12136 352 GKSNDYLGCLELCCNSKG 369 (399)
Q Consensus 352 ~~~d~~lG~~~i~l~~~~ 369 (399)
. ..--||...|.++.+-
T Consensus 71 ~-~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 71 D-QPVPVGLLWLRLSDIA 87 (109)
T ss_pred C-eecceeeehhhHHHHH
Confidence 3 3457999888887543
No 235
>KOG2060|consensus
Probab=98.66 E-value=1.3e-07 Score=87.68 Aligned_cols=123 Identities=22% Similarity=0.339 Sum_probs=91.7
Q ss_pred ccceeEEEEEeeeccceeEEEEEEeeecCCCCCC-CCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEecc
Q psy12136 257 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKI 334 (399)
Q Consensus 257 ~~~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~-~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~ 334 (399)
...|++++.++ ...+.+.|.|++|++|..... ...++|||+|++.+.+.- .+.+|+...+|.+|-|-+...|.-.+
T Consensus 255 P~mg~iq~~~~--d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp 332 (405)
T KOG2060|consen 255 PNMGDIQIALM--DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP 332 (405)
T ss_pred cccccchhhhh--cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCC
Confidence 34555555443 246899999999999976643 336899999999875433 78999999999999998888887653
Q ss_pred CcccccEEEEEEE-eCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCCceeeEEeCCCC
Q psy12136 335 TELSKQTLVITVW-DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 395 (399)
Q Consensus 335 ~~l~~~~l~i~V~-d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~~~~~Wh~L~~~ 395 (399)
....|.++|| |+..+..+.|+|-++|-+.+.+ .-..+...||+|.+.
T Consensus 333 ---~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~-----------ls~~~~igwyKlfgs 380 (405)
T KOG2060|consen 333 ---PGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELN-----------LSSSPVIGWYKLFGS 380 (405)
T ss_pred ---CccEEEEEEeccccccchHHHhhHHHHHhhhhc-----------cccccceeeeeccCC
Confidence 3678999999 6667778899999998887643 122245677777653
No 236
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.59 E-value=8.2e-08 Score=76.16 Aligned_cols=93 Identities=15% Similarity=0.262 Sum_probs=69.7
Q ss_pred EEEEEEeeecCCCCCC-------------CCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEecc-------
Q psy12136 275 LIVNLIKCTNLIPMDS-------------NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI------- 334 (399)
Q Consensus 275 L~v~v~~a~~L~~~~~-------------~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~------- 334 (399)
|.|.|++|.+|..... .--.|+||++.+..-.+++.++|+++-++..|.|+..++|.++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 4678888888854310 11169999999765445589999999999999999999999762
Q ss_pred ------CcccccEEEEEEEeCCCC----------CCCeeeEEEEEccCC
Q psy12136 335 ------TELSKQTLVITVWDKDYG----------KSNDYLGCLELCCNS 367 (399)
Q Consensus 335 ------~~l~~~~l~i~V~d~~~~----------~~d~~lG~~~i~l~~ 367 (399)
+-|....|.|+||+.... .+|-.||.+.|++..
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~ 129 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRD 129 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHH
Confidence 224457899999997632 346689999999754
No 237
>KOG2060|consensus
Probab=98.52 E-value=1.1e-07 Score=88.26 Aligned_cols=122 Identities=23% Similarity=0.321 Sum_probs=98.9
Q ss_pred CCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCC-CCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEecee
Q psy12136 113 DTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIH-GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191 (399)
Q Consensus 113 ~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~-~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v 191 (399)
....|.|++.+.- ..+.|.|.|++|++|..+... ..++|||+|++++.+....+.+|+...+|.+|.|.+...|.
T Consensus 254 ~P~mg~iq~~~~d--~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~-- 329 (405)
T KOG2060|consen 254 APNMGDIQIALMD--SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFD-- 329 (405)
T ss_pred Ccccccchhhhhc--ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhc--
Confidence 3456777777654 678999999999999877544 36899999999998777788999999999999999988883
Q ss_pred CcccCCCceEEEEEE-EcCCCCC-cceeeEEecCcccCCCc-ceeEEEeecc
Q psy12136 192 SETDLSLQSLHILVL-DDDKYGH-DFLGEARFPLNRLRPHI-SRDLCLNLCK 240 (399)
Q Consensus 192 ~~~~l~~~~L~~~V~-d~~~~~~-~~lG~~~i~l~~l~~~~-~~~~~~~L~~ 240 (399)
+......|++.|| |+.+... .|+|.+.+-+.+|.... ....|+.|..
T Consensus 330 --~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 330 --QSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred --cCCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 3334689999999 5677666 99999999999998776 6667777754
No 238
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.51 E-value=1.3e-07 Score=69.70 Aligned_cols=93 Identities=17% Similarity=0.208 Sum_probs=72.6
Q ss_pred EEEEEEecCCCCCCCCC-CCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136 133 HVTLHRAKGLRAMDIHG-TSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 211 (399)
Q Consensus 133 ~V~V~~a~~L~~~~~~~-~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~ 211 (399)
-++|+.|+||......| .+.-|++=.+.-. ..-.+||.+.+...||+|+|+|.| .+....+....|.|.|++ .+-
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~--kpv~~KsS~rrgs~d~~f~ETFVF-qi~l~qL~~V~L~fsv~~-~~~ 77 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLP--KPVHFKSSAKEGSNDIEFMETFVF-AIKLQNLQTVRLVFKIQT-QTP 77 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecC--CCccccchhhcCCCChhHHHHHHH-HHHHhhccceEEEEEeec-cCC
Confidence 47899999998655443 3455776555311 235789999999999999999999 688899999999999999 232
Q ss_pred CCcceeeEEecCcccCCC
Q psy12136 212 GHDFLGEARFPLNRLRPH 229 (399)
Q Consensus 212 ~~~~lG~~~i~l~~l~~~ 229 (399)
+++.||.|.+.|+++-..
T Consensus 78 RKe~iG~~sL~l~s~gee 95 (103)
T cd08684 78 RKRTIGECSLSLRTLSTQ 95 (103)
T ss_pred ccceeeEEEeecccCCHH
Confidence 339999999999988654
No 239
>PLN02352 phospholipase D epsilon
Probab=98.34 E-value=2.9e-06 Score=87.28 Aligned_cols=118 Identities=12% Similarity=0.122 Sum_probs=82.3
Q ss_pred CCEEEEEEEEecCCCCCC----C-CCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEE
Q psy12136 129 TCSLHVTLHRAKGLRAMD----I-HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHI 203 (399)
Q Consensus 129 ~~~L~V~V~~a~~L~~~~----~-~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~ 203 (399)
++.|.++|++|+-+...- . ....||||.|.+. .....|| .+..||+|||.|.++ +... ....+.|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~----~~~v~rt---~~~~~p~w~e~f~i~-~ah~--~~~~~~f 78 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIG----NKKVAKT---SHEYDRVWNQTFQIL-CAHP--LDSTITI 78 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeC----CcEEecC---CCCCCCccccceeEE-eeee--cCCcEEE
Confidence 578889999987433221 1 1123999999996 3566777 566699999999884 3332 1257899
Q ss_pred EEEEcCCCCCcceeeEEecCcccCCCcc-eeEEEeecccCCCCCccccccccccccceeEEEEEeeecc
Q psy12136 204 LVLDDDKYGHDFLGEARFPLNRLRPHIS-RDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTK 271 (399)
Q Consensus 204 ~V~d~~~~~~~~lG~~~i~l~~l~~~~~-~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~~ 271 (399)
.|.| +..+||.+.||..++..+.. .+.|+++......+ ... ..|++++.|.|.
T Consensus 79 ~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p----------~~~-~~~~~~~~~~~~ 132 (758)
T PLN02352 79 TLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKP----------NPE-LKLRFMLWFRPA 132 (758)
T ss_pred EEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCC----------CCC-CEEEEEEEEEEh
Confidence 9988 35899999999999988865 78888886532111 111 578888888653
No 240
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.05 E-value=5.4e-06 Score=65.94 Aligned_cols=95 Identities=26% Similarity=0.421 Sum_probs=69.7
Q ss_pred EEEEEEEecCCCCCC-----------C--CCCCCcEEEEEE--ecCCCCCceEecccccCCCCCeecceEEeceeC----
Q psy12136 132 LHVTLHRAKGLRAMD-----------I--HGTSDPFCKLNL--VPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS---- 192 (399)
Q Consensus 132 L~V~V~~a~~L~~~~-----------~--~~~~dpyv~v~l--~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~---- 192 (399)
|.|.|++|.+|.... . .=..++||++.+ +| ....++|+++.++--|.|+-.|+|. .+
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~---~~e~r~TrtVArSFcPeF~Hh~Efp-c~lv~~ 76 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLP---EKELRRTRTVARSFCPEFNHHVEFP-CNLVVQ 76 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCC---CCceeeccchhhhcCCCccceEEEe-cccEEE
Confidence 468899999886421 1 113689999996 45 3468899999999999999999985 33
Q ss_pred ---------cccCCCceEEEEEEEcCCCCC-----------cceeeEEecCcccCCCc
Q psy12136 193 ---------ETDLSLQSLHILVLDDDKYGH-----------DFLGEARFPLNRLRPHI 230 (399)
Q Consensus 193 ---------~~~l~~~~L~~~V~d~~~~~~-----------~~lG~~~i~l~~l~~~~ 230 (399)
.+-|....+.|+||++...+. -+||.+.||+.+|....
T Consensus 77 ~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~r 134 (143)
T cd08683 77 RNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKR 134 (143)
T ss_pred cCCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcc
Confidence 112345778999999764432 47999999999987543
No 241
>PLN02352 phospholipase D epsilon
Probab=98.01 E-value=1.4e-05 Score=82.24 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=71.1
Q ss_pred eeEEEEEEeeecCCCC----CC-CCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEE
Q psy12136 273 RALIVNLIKCTNLIPM----DS-NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVW 347 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~----~~-~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~ 347 (399)
|.|.++|++|+-+... .. ....+|||.|.+.. ....+| .+..||.|||+|...+.. ..+..|.|+|.
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~---~~v~rt---~~~~~p~w~e~f~i~~ah--~~~~~~~f~vk 81 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGN---KKVAKT---SHEYDRVWNQTFQILCAH--PLDSTITITLK 81 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeCC---cEEecC---CCCCCCccccceeEEeee--ecCCcEEEEEe
Confidence 6778888888733221 11 11139999999952 266777 556699999999888763 23357999999
Q ss_pred eCCCCCCCeeeEEEEEccCCC--CCc-chhhhhhhcCCCCce
Q psy12136 348 DKDYGKSNDYLGCLELCCNSK--GDR-LRHWVDMMKYPDHKH 386 (399)
Q Consensus 348 d~~~~~~d~~lG~~~i~l~~~--~~~-~~~w~~l~~~p~~~~ 386 (399)
| .-.+||.+.|++... +.. ++.|++++..-+++.
T Consensus 82 ~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~ 118 (758)
T PLN02352 82 T-----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPN 118 (758)
T ss_pred c-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCC
Confidence 8 267999999998763 333 788888887766554
No 242
>KOG1327|consensus
Probab=97.93 E-value=4.3e-05 Score=75.25 Aligned_cols=113 Identities=24% Similarity=0.333 Sum_probs=94.2
Q ss_pred CCCcceEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEe-cCCCCCceEecccccCCCCCeecceEEece
Q psy12136 112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLV-PLTKTSHRLRTKTCLRTINPEFHEKLTFYS 190 (399)
Q Consensus 112 ~~~~~G~i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~-~~~~~~~~~rT~~~~~t~nP~wne~f~f~~ 190 (399)
.....|.|.+.++-..+......-.++|++|..++..+++|||..++-. .++.....++|.++++++||.|-+..
T Consensus 118 ~~~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~---- 193 (529)
T KOG1327|consen 118 KNAGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFS---- 193 (529)
T ss_pred ccCCcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccccc----
Confidence 4557799999999988888888888899999999999999999999865 35566778999999999999998732
Q ss_pred eCcccCC----CceEEEEEEEcCCCCC-cceeeEEecCcccCC
Q psy12136 191 VSETDLS----LQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 228 (399)
Q Consensus 191 v~~~~l~----~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~ 228 (399)
++...+. ...+.+.+||++..++ ++||++..++.++..
T Consensus 194 i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 194 ISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred cchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 2333322 3788999999999999 999999999999874
No 243
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.67 E-value=0.0041 Score=59.11 Aligned_cols=218 Identities=15% Similarity=0.159 Sum_probs=134.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccC-----CCceEEEEEE
Q psy12136 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL-----SLQSLHILVL 206 (399)
Q Consensus 132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l-----~~~~L~~~V~ 206 (399)
+.|.|+++++.+... ...-.|...+. .....|..+..+..|.||....+ ++....+ ....|++++|
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~n-----g~~l~TDpv~~~~~p~f~teL~W-E~Dr~~l~~~r~~~tPiKl~c~ 72 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFN-----GESLETDPVPHTESPQFNTELAW-ECDRKALKQHRLQRTPIKLQCF 72 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeC-----CceeeecCCCCCCCceeecceee-eccHHHHHHhhccCCceEEEEE
Confidence 689999999999873 24567777773 57889999999999999999888 5554433 3477899999
Q ss_pred EcC-CCCC-cceeeEEecCccc---CCC--cceeEEEeeccc---CC-CCCcc----------cc--------ccccccc
Q psy12136 207 DDD-KYGH-DFLGEARFPLNRL---RPH--ISRDLCLNLCKH---YP-VPREE----------EV--------WGEEECW 257 (399)
Q Consensus 207 d~~-~~~~-~~lG~~~i~l~~l---~~~--~~~~~~~~L~~~---~~-~~~~~----------~~--------~~~~~~~ 257 (399)
..+ ..+. +.||.+.++|... ..+ .....|+.|..- |. .+++. .. .......
T Consensus 73 a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~ 152 (340)
T PF12416_consen 73 AVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPP 152 (340)
T ss_pred EecCCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCc
Confidence 887 3344 9999999999998 444 344566666432 11 11110 00 0000011
Q ss_pred cce------------eEEEEEe----e--------eccceeEEEEEEeeecCCCCC----C--CCCCCcEEEEEEecCCC
Q psy12136 258 QHG------------KIFLTLC----F--------STKKRALIVNLIKCTNLIPMD----S--NGFSDPFIKLYLKPDLH 307 (399)
Q Consensus 258 ~~G------------~l~l~l~----~--------~~~~~~L~v~v~~a~~L~~~~----~--~g~~dpyV~v~l~~~~~ 307 (399)
..| .+.+.+. | ......|.|++..|.||...- . .+...-|....+.+
T Consensus 153 ~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllG--- 229 (340)
T PF12416_consen 153 RQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLG--- 229 (340)
T ss_pred ccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecC---
Confidence 122 1111110 0 011466889999999986652 1 12345566666765
Q ss_pred CceEeecceeCCCCceec--ceEEEEeccC--cc----c-ccEEEEEEEeCCCCCCCeeeEEEEEccCC
Q psy12136 308 KRKYKTGVKWKTLNPIFN--EEFAIETKIT--EL----S-KQTLVITVWDKDYGKSNDYLGCLELCCNS 367 (399)
Q Consensus 308 ~~~~kT~v~~~t~nP~wn--e~f~f~v~~~--~l----~-~~~l~i~V~d~~~~~~d~~lG~~~i~l~~ 367 (399)
....|.......+|.|- +...|.+... .+ . ...|.|.++. .+..||.+.|++..
T Consensus 230 -n~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~-----g~~~Lg~~~v~l~~ 292 (340)
T PF12416_consen 230 -NDVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC-----GNQSLGSTSVPLQP 292 (340)
T ss_pred -cEeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee-----CCcEEEEEEEEhhh
Confidence 34666777777888764 3322554321 11 1 2467777775 36689999999875
No 244
>PLN02964 phosphatidylserine decarboxylase
Probab=97.54 E-value=0.00014 Score=74.46 Aligned_cols=96 Identities=15% Similarity=0.130 Sum_probs=74.6
Q ss_pred eccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEe
Q psy12136 269 STKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD 348 (399)
Q Consensus 269 ~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d 348 (399)
.+-.|.+.++++.|+ |+. .|+|..+... +.+++||.+.++|.||+||+...|.+...++. ...|.|||
T Consensus 50 ~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~---g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~ 117 (644)
T PLN02964 50 EDFSGIALLTLVGAE----MKF---KDKWLACVSF---GEQTFRTETSDSTDKPVWNSEKKLLLEKNGPH--LARISVFE 117 (644)
T ss_pred ccccCeEEEEeehhh----hcc---CCcEEEEEEe---cceeeeeccccccCCcccchhhceEeccCCcc--eEEEEEEe
Confidence 344677888888887 332 5888776544 34899999999999999999999998766554 46999999
Q ss_pred CCCCCCCeeeEEEEEccCCC-CCcchhhh
Q psy12136 349 KDYGKSNDYLGCLELCCNSK-GDRLRHWV 376 (399)
Q Consensus 349 ~~~~~~d~~lG~~~i~l~~~-~~~~~~w~ 376 (399)
++.+..++++|.+.+++... ..+.+.+.
T Consensus 118 ~~~~s~n~lv~~~e~~~t~f~~kqi~elk 146 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFDFVTQEPESAC 146 (644)
T ss_pred cCCCCHHHhhhheeecHhhccHHHHHHHH
Confidence 99999999999999988753 33444443
No 245
>PLN02964 phosphatidylserine decarboxylase
Probab=97.54 E-value=0.00017 Score=73.83 Aligned_cols=89 Identities=16% Similarity=0.243 Sum_probs=70.1
Q ss_pred eCCCCEEEEEEEEecCCCCCCCCCCCCcEE-EEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEE
Q psy12136 126 DSTTCSLHVTLHRAKGLRAMDIHGTSDPFC-KLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHIL 204 (399)
Q Consensus 126 ~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv-~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~ 204 (399)
+.-.+...+++++|+ ++. .|+|. .+.+ +.+.+||.+.++|.||+||+.-.| .|.+.++ ...+|.
T Consensus 50 ~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~-----g~~~f~t~~~~~~~~p~~~~~~~~-~~~~~~~--~~~~~~ 114 (644)
T PLN02964 50 EDFSGIALLTLVGAE----MKF---KDKWLACVSF-----GEQTFRTETSDSTDKPVWNSEKKL-LLEKNGP--HLARIS 114 (644)
T ss_pred ccccCeEEEEeehhh----hcc---CCcEEEEEEe-----cceeeeeccccccCCcccchhhce-EeccCCc--ceEEEE
Confidence 334577888889987 332 47664 4555 468999999999999999998888 5776665 446999
Q ss_pred EEEcCCCCC-cceeeEEecCcccCCC
Q psy12136 205 VLDDDKYGH-DFLGEARFPLNRLRPH 229 (399)
Q Consensus 205 V~d~~~~~~-~~lG~~~i~l~~l~~~ 229 (399)
|||++.++. +++|.|.++|.++...
T Consensus 115 ~~~~~~~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 115 VFETNRLSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred EEecCCCCHHHhhhheeecHhhccHH
Confidence 999999998 9999999988777644
No 246
>KOG1265|consensus
Probab=97.36 E-value=0.00031 Score=72.10 Aligned_cols=90 Identities=24% Similarity=0.469 Sum_probs=71.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEE--ecCCCCCceEeccccc-CCCCCeecc-eEEeceeCcccCCCceEEEEEE
Q psy12136 131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNL--VPLTKTSHRLRTKTCL-RTINPEFHE-KLTFYSVSETDLSLQSLHILVL 206 (399)
Q Consensus 131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l--~~~~~~~~~~rT~~~~-~t~nP~wne-~f~f~~v~~~~l~~~~L~~~V~ 206 (399)
.+.|+||++.=|..+. ...||.|.+ +|.......+||+++. ++.||+|+| .|.|..|-..++ ..|+|.||
T Consensus 704 t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeL--A~lRiavy 777 (1189)
T KOG1265|consen 704 TLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPEL--ASLRIAVY 777 (1189)
T ss_pred eEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccch--hheeeeee
Confidence 7899999999998776 458999998 3443334677888755 579999995 588876666665 78999999
Q ss_pred EcCCCCCcceeeEEecCcccCCC
Q psy12136 207 DDDKYGHDFLGEARFPLNRLRPH 229 (399)
Q Consensus 207 d~~~~~~~~lG~~~i~l~~l~~~ 229 (399)
+.+. .+||+-.+|+..|..+
T Consensus 778 eEgg---K~ig~RIlpvd~l~~G 797 (1189)
T KOG1265|consen 778 EEGG---KFIGQRILPVDGLNAG 797 (1189)
T ss_pred ccCC---ceeeeeccchhcccCc
Confidence 8765 7999999999999865
No 247
>KOG3837|consensus
Probab=97.30 E-value=0.00011 Score=69.37 Aligned_cols=131 Identities=15% Similarity=0.159 Sum_probs=92.6
Q ss_pred EEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcc---------
Q psy12136 124 TYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET--------- 194 (399)
Q Consensus 124 ~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~--------- 194 (399)
.-+-....|.+.|+++++++........|-||++.+.-.....++.+|.+++.|.+|.|+|.|.. .+...
T Consensus 361 f~dl~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fkl-ni~rg~~~nr~fqR 439 (523)
T KOG3837|consen 361 FEDLKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKL-NIRRGPGLNREFQR 439 (523)
T ss_pred ccccchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceee-eccCCCcccHHHHH
Confidence 33345577888999999887655444578899998732222357889999999999999999988 35431
Q ss_pred cCCCceEEEEEEEcCCCCC--cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEee
Q psy12136 195 DLSLQSLHILVLDDDKYGH--DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 268 (399)
Q Consensus 195 ~l~~~~L~~~V~d~~~~~~--~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~ 268 (399)
-+....+.|++|+.+.+-+ .++|.+.+.|.-|.........++|.+. .....|.|.+.++.
T Consensus 440 ~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG-------------RK~vGGkLevKvRi 502 (523)
T KOG3837|consen 440 RFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG-------------RKAVGGKLEVKVRI 502 (523)
T ss_pred HHHhcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceecccc-------------ccccCCeeEEEEEE
Confidence 1223678999999998844 8999999999888766555555555431 12466777766654
No 248
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=97.28 E-value=0.0018 Score=55.82 Aligned_cols=93 Identities=13% Similarity=0.173 Sum_probs=67.9
Q ss_pred eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC--ceEeecceeCCCCceecceEEEEeccCccc-ccEEEEEEEeC
Q psy12136 273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDK 349 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l~-~~~l~i~V~d~ 349 (399)
..+.|+|+.+.+|.. .....+.||++.+..++.. ....|+.+....++.|||.+.|+|...+|. +..|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 468899999999975 2344788999887654322 344565555556799999999998776665 46799999987
Q ss_pred CCCC----------------CCeeeEEEEEccCC
Q psy12136 350 DYGK----------------SNDYLGCLELCCNS 367 (399)
Q Consensus 350 ~~~~----------------~d~~lG~~~i~l~~ 367 (399)
.... ....||.+.+.|-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 5322 24689999999764
No 249
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=97.25 E-value=0.006 Score=51.01 Aligned_cols=131 Identities=18% Similarity=0.268 Sum_probs=91.2
Q ss_pred CCCCEEEEEEEEecCCCCCCCC--CCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCC-------
Q psy12136 127 STTCSLHVTLHRAKGLRAMDIH--GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS------- 197 (399)
Q Consensus 127 ~~~~~L~V~V~~a~~L~~~~~~--~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~------- 197 (399)
+....|.++|+.++-....-.. +..+..+.+++.- ..++++|+.+..+++|.|+|.|.| .+..+...
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f---~~QRF~S~~Vp~~~eP~f~e~Flf-~l~~~~~~~~~~~~~ 81 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHF---RGQRFRSKPVPCACEPDFNEEFLF-ELPRDSFGAGSTATT 81 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEe---cCceEecCCcccccCCCCCCcEEE-EecccccccccchhH
Confidence 3456789999998865433221 4556666666632 468999999999999999999999 56655311
Q ss_pred ----CceEEEEEEEcCCCCC-cceeeEEecCcccCCCcce--eEEEeecccCCCCCccccccccccccceeEEEEEeeec
Q psy12136 198 ----LQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISR--DLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 270 (399)
Q Consensus 198 ----~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~~~--~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~ 270 (399)
...|++.|...+..+. .++|.-.+.-..+...... ...+.|..- . ....-..|-|.+++...|
T Consensus 82 lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~---~-------~e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 82 LLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGV---G-------PESKVPVGILDLRLELLP 151 (156)
T ss_pred hhcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEecc---C-------CCCccceeEEEEEEEeec
Confidence 2568888988888887 9999999988887766554 444444321 1 111246788888887776
Q ss_pred c
Q psy12136 271 K 271 (399)
Q Consensus 271 ~ 271 (399)
.
T Consensus 152 ~ 152 (156)
T PF15627_consen 152 N 152 (156)
T ss_pred C
Confidence 4
No 250
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=97.14 E-value=0.0035 Score=53.05 Aligned_cols=91 Identities=13% Similarity=0.076 Sum_probs=65.3
Q ss_pred eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC--ceEeecceeCCCCceecceEEEEeccCccc-ccEEEEEEEeC
Q psy12136 273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDK 349 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l~-~~~l~i~V~d~ 349 (399)
..+.|.|+.+.++... ..++-||++.+..++.. ....|..+.. .++.|||.++|+|...++. ++.|.|+||+.
T Consensus 8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 4678999999998753 34789999988754322 2334443333 6799999999998776665 46899999997
Q ss_pred CCCC----CCeeeEEEEEccCC
Q psy12136 350 DYGK----SNDYLGCLELCCNS 367 (399)
Q Consensus 350 ~~~~----~d~~lG~~~i~l~~ 367 (399)
...+ ....||.+.+.|-+
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred ecccCCCCceEEEEEEEEEEEC
Confidence 6421 23579999999765
No 251
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=97.06 E-value=0.0039 Score=52.91 Aligned_cols=94 Identities=13% Similarity=0.095 Sum_probs=66.3
Q ss_pred eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC--ceEeecceeCCCCceecceEEEEeccCccc-ccEEEEEEEeC
Q psy12136 273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDK 349 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l~-~~~l~i~V~d~ 349 (399)
..+.|.+....++... .....+-||++.+..++.. ....|.......++.|||.+.|++...++. +..|.|+||+.
T Consensus 8 ~~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 4567778787777541 2334778899887754321 344555444446799999999998766655 56899999998
Q ss_pred CCCC--CCeeeEEEEEccCC
Q psy12136 350 DYGK--SNDYLGCLELCCNS 367 (399)
Q Consensus 350 ~~~~--~d~~lG~~~i~l~~ 367 (399)
...+ .+..||.+.+.|-+
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred ecCCCCcceEEEEEeEEeEc
Confidence 7543 46799999999765
No 252
>KOG1265|consensus
Probab=96.99 E-value=0.0015 Score=67.34 Aligned_cols=94 Identities=19% Similarity=0.351 Sum_probs=72.8
Q ss_pred ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCC---CceEeeccee-CCCCceecc-eEEEE-eccCcccccEEEEE
Q psy12136 272 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH---KRKYKTGVKW-KTLNPIFNE-EFAIE-TKITELSKQTLVIT 345 (399)
Q Consensus 272 ~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~---~~~~kT~v~~-~t~nP~wne-~f~f~-v~~~~l~~~~l~i~ 345 (399)
++.+.|+|+.+.=|..++ ...||+|.+.+-.. ++.++|+++. ++.||+|+| .|.|. |..+++ +.|.|.
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeL--A~lRia 775 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPEL--ASLRIA 775 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccch--hheeee
Confidence 478899999999886554 34899999874222 2678888865 568999995 68887 555565 589999
Q ss_pred EEeCCCCCCCeeeEEEEEccCCCCCcchhh
Q psy12136 346 VWDKDYGKSNDYLGCLELCCNSKGDRLRHW 375 (399)
Q Consensus 346 V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w 375 (399)
||+.. ..+||+=.++++....++.|-
T Consensus 776 vyeEg----gK~ig~RIlpvd~l~~GYrhv 801 (1189)
T KOG1265|consen 776 VYEEG----GKFIGQRILPVDGLNAGYRHV 801 (1189)
T ss_pred eeccC----CceeeeeccchhcccCcceeE
Confidence 99863 569999999999888777774
No 253
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.96 E-value=0.0034 Score=53.25 Aligned_cols=76 Identities=22% Similarity=0.180 Sum_probs=57.3
Q ss_pred CCCCcEEEEEEecCCCC--ceEeecceeCCCCceecceEEEEeccCccc-ccEEEEEEEeCCCCCCCeeeEEEEEccCC
Q psy12136 292 GFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDKDYGKSNDYLGCLELCCNS 367 (399)
Q Consensus 292 g~~dpyV~v~l~~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l~-~~~l~i~V~d~~~~~~d~~lG~~~i~l~~ 367 (399)
..++-||++.+..++.. ....|..+.-+..+.|||.+.|+|...++. ++.|.|+||+....+....||.+.+.|-.
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 34788999988754322 234555555556788999999998877766 46899999998765567799999999765
No 254
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=96.90 E-value=0.02 Score=49.38 Aligned_cols=95 Identities=17% Similarity=0.206 Sum_probs=66.5
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCC-CceEecccccCCCCCeecceEEeceeCcccCC-CceEEEEEE
Q psy12136 129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKT-SHRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILVL 206 (399)
Q Consensus 129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~-~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~-~~~L~~~V~ 206 (399)
...++|+|+.+.+|.. .....+-||++.|-.++.. .....|+.+.....+.|||.+.| .+...+|. ...|.|.||
T Consensus 7 ~~~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F-~I~i~dLPr~ArLciti~ 83 (173)
T cd08693 7 EEKFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEF-DINVCDLPRMARLCFAIY 83 (173)
T ss_pred CCCEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEc-ccchhcCChhHeEEEEEE
Confidence 3579999999999986 2234677888877543321 23445666655677999999999 47766664 478999999
Q ss_pred EcCCC----------------CC-cceeeEEecCccc
Q psy12136 207 DDDKY----------------GH-DFLGEARFPLNRL 226 (399)
Q Consensus 207 d~~~~----------------~~-~~lG~~~i~l~~l 226 (399)
+.... +. ..||.+.++|-+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 84 EVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred EecccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 86532 12 5788888887664
No 255
>KOG3837|consensus
Probab=96.80 E-value=0.00075 Score=63.89 Aligned_cols=96 Identities=17% Similarity=0.256 Sum_probs=75.2
Q ss_pred ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCC-CCceEeecceeCCCCceecceEEEEeccCc---------ccccE
Q psy12136 272 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL-HKRKYKTGVKWKTLNPIFNEEFAIETKITE---------LSKQT 341 (399)
Q Consensus 272 ~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~-~~~~~kT~v~~~t~nP~wne~f~f~v~~~~---------l~~~~ 341 (399)
...|.+.|+++.+++......-.|.||++++.-.. ...+.+|.+++.|.+|.|+|.|...+.... .....
T Consensus 366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 45688899999988775544457889999976433 348899999999999999999999987521 11356
Q ss_pred EEEEEEeCC-CCCCCeeeEEEEEccCC
Q psy12136 342 LVITVWDKD-YGKSNDYLGCLELCCNS 367 (399)
Q Consensus 342 l~i~V~d~~-~~~~d~~lG~~~i~l~~ 367 (399)
++|+||++. .+.+|.++|.+.|.+.-
T Consensus 446 ~kfeifhkggf~rSdkl~gt~nikle~ 472 (523)
T KOG3837|consen 446 KKFEIFHKGGFNRSDKLTGTGNIKLEI 472 (523)
T ss_pred eeEEEeeccccccccceeceeeeeehh
Confidence 999999987 46778999999999763
No 256
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.77 E-value=0.0086 Score=50.69 Aligned_cols=94 Identities=14% Similarity=0.131 Sum_probs=66.3
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCC-ceEecccccCCCCCeecceEEeceeCcccCC-CceEEEEEE
Q psy12136 129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTS-HRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILVL 206 (399)
Q Consensus 129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~-~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~-~~~L~~~V~ 206 (399)
...++|+|+.|.++.-.+ ..|-||++.+-.++... ....|+.+.. .++.|||...| .|...++. ...|.|+||
T Consensus 7 ~~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~f-pI~i~dLPr~ArL~iti~ 81 (158)
T cd08398 7 NSNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDY-DIYIPDLPRSARLCLSIC 81 (158)
T ss_pred CCCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEc-ccchhcCChhheEEEEEE
Confidence 457999999999988643 36899999886533211 2334544443 67999999999 47766664 478999999
Q ss_pred EcCCC----CC-cceeeEEecCcccC
Q psy12136 207 DDDKY----GH-DFLGEARFPLNRLR 227 (399)
Q Consensus 207 d~~~~----~~-~~lG~~~i~l~~l~ 227 (399)
+.... .. ..+|.+.++|-+..
T Consensus 82 ~~~~~~~~k~~~~~iG~~ni~LFd~~ 107 (158)
T cd08398 82 SVKGRKGAKEEHCPLAWGNINLFDYT 107 (158)
T ss_pred EEecccCCCCceEEEEEEEEEEECCC
Confidence 86542 12 56999999887743
No 257
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=96.73 E-value=0.0071 Score=52.12 Aligned_cols=95 Identities=16% Similarity=0.140 Sum_probs=68.4
Q ss_pred eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC--ceEeeccee----CCCCceecceEEEEeccCccc-ccEEEEE
Q psy12136 273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKW----KTLNPIFNEEFAIETKITELS-KQTLVIT 345 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~--~~~kT~v~~----~t~nP~wne~f~f~v~~~~l~-~~~l~i~ 345 (399)
..+.|+|..+.+++........+-||++.+..+++. ....|+... -...+.|||.+.|++...++. +..|.|+
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 567889999999987765556889999988754322 233444321 123577999999998766655 5689999
Q ss_pred EEeCCCCC---------CCeeeEEEEEccCC
Q psy12136 346 VWDKDYGK---------SNDYLGCLELCCNS 367 (399)
Q Consensus 346 V~d~~~~~---------~d~~lG~~~i~l~~ 367 (399)
||+....+ .+..||.+.+.|-+
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEc
Confidence 99976543 35799999999765
No 258
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.72 E-value=0.011 Score=56.32 Aligned_cols=87 Identities=16% Similarity=0.214 Sum_probs=69.8
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCc-----ccccEEEEEEEeC
Q psy12136 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITE-----LSKQTLVITVWDK 349 (399)
Q Consensus 275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-----l~~~~l~i~V~d~ 349 (399)
+.|.|++|+|++... .-...|..++. +....|..+..+..|.||....+.+.... +....|++++|-.
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~n----g~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~ 74 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFN----GESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAV 74 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeC----CceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEe
Confidence 678999999998652 24567778884 37889999999999999999999875432 3356799999988
Q ss_pred C-CCCCCeeeEEEEEccCCC
Q psy12136 350 D-YGKSNDYLGCLELCCNSK 368 (399)
Q Consensus 350 ~-~~~~d~~lG~~~i~l~~~ 368 (399)
+ ..+..+.||.+.++|.+.
T Consensus 75 ~~~~~~re~iGyv~LdLRsa 94 (340)
T PF12416_consen 75 DGSTGKRESIGYVVLDLRSA 94 (340)
T ss_pred cCCCCcceeccEEEEEcccc
Confidence 8 567788999999999864
No 259
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.67 E-value=0.043 Score=46.45 Aligned_cols=97 Identities=19% Similarity=0.224 Sum_probs=66.7
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCC-CCceEecccccCCCCCeecceEEeceeCcccCC-CceEEEEEE
Q psy12136 129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK-TSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILVL 206 (399)
Q Consensus 129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~-~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~-~~~L~~~V~ 206 (399)
...++|+|..+.++...+ ....+-||.+.+-.++. ......|.......++.|||...|+ +...+|. ...|.|+||
T Consensus 7 ~~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~-i~~~~LP~~arL~itl~ 84 (156)
T cd08380 7 NFNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFD-ILISDLPREARLCLSIY 84 (156)
T ss_pred CCCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEcc-chhhcCChhheEEEEEE
Confidence 346788888888877621 23467888888754332 2233444444444789999999994 5555554 478999999
Q ss_pred EcCCCC--C-cceeeEEecCcccC
Q psy12136 207 DDDKYG--H-DFLGEARFPLNRLR 227 (399)
Q Consensus 207 d~~~~~--~-~~lG~~~i~l~~l~ 227 (399)
+....+ . ..||.+.++|-+..
T Consensus 85 ~~~~~~~~~~~~iG~~~~~lFd~~ 108 (156)
T cd08380 85 AVSEPGSKKEVPLGWVNVPLFDYK 108 (156)
T ss_pred EEecCCCCcceEEEEEeEEeEccc
Confidence 977654 4 78999999998753
No 260
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.40 E-value=0.034 Score=46.55 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=74.6
Q ss_pred ccceeEEEEEEeeecCCCCCC--CCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCccc---------
Q psy12136 270 TKKRALIVNLIKCTNLIPMDS--NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELS--------- 338 (399)
Q Consensus 270 ~~~~~L~v~v~~a~~L~~~~~--~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~--------- 338 (399)
|...+|++.|..++-....-. .+..+..+.+++... .++++|+.+.-+.+|.|+|.|-|.+..+...
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~--~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~ll 83 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFR--GQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLL 83 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEec--CceEecCCcccccCCCCCCcEEEEecccccccccchhHhh
Confidence 455788899999885432111 145666777776553 3899999999999999999999998765311
Q ss_pred --ccEEEEEEEeCCCCCCCeeeEEEEEccCCCCCcchhhhhhhcCCCC
Q psy12136 339 --KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDH 384 (399)
Q Consensus 339 --~~~l~i~V~d~~~~~~d~~lG~~~i~l~~~~~~~~~w~~l~~~p~~ 384 (399)
...|.+.|.-.+..+...++|.-.++ |..++..+..
T Consensus 84 s~~~pihivli~~d~~~~~~Lv~s~~ld----------WR~vL~s~~~ 121 (156)
T PF15627_consen 84 SISDPIHIVLIRTDPSGETTLVGSHFLD----------WRKVLCSGNG 121 (156)
T ss_pred cCCCceEEEEEEecCCCceEeeeeceeh----------HHHHhccCCC
Confidence 25688888887776666888887777 7777777654
No 261
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=96.35 E-value=0.025 Score=48.72 Aligned_cols=94 Identities=15% Similarity=0.127 Sum_probs=61.2
Q ss_pred eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC-ceEeecceeCCCCceecceEEEEeccCccc-ccEEEEEEEeCC
Q psy12136 273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDKD 350 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~-~~~kT~v~~~t~nP~wne~f~f~v~~~~l~-~~~l~i~V~d~~ 350 (399)
..++|+|..+.++ ..+.......||++.+..++.- ....|..+..+.++.|||.+.|+|...++. +..|.|+||+..
T Consensus 10 ~~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 10 RKFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 3566777777643 2333333567888876653222 233555555566799999999998877766 468999999963
Q ss_pred CCC----------------CCeeeEEEEEccCC
Q psy12136 351 YGK----------------SNDYLGCLELCCNS 367 (399)
Q Consensus 351 ~~~----------------~d~~lG~~~i~l~~ 367 (399)
..+ .+..||-+.+.|-.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 89 APALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred cCcccccccccccccccccccceEEEEEEEEEc
Confidence 211 24578888888654
No 262
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=96.12 E-value=0.057 Score=46.50 Aligned_cols=97 Identities=16% Similarity=0.106 Sum_probs=67.3
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCC-ceEeccccc----CCCCCeecceEEeceeCcccCC-CceEE
Q psy12136 129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTS-HRLRTKTCL----RTINPEFHEKLTFYSVSETDLS-LQSLH 202 (399)
Q Consensus 129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~-~~~rT~~~~----~t~nP~wne~f~f~~v~~~~l~-~~~L~ 202 (399)
...+.|+|..+.+++........|-||.+.|-.++... ....|+... -...+.|||...|+ +...++. ...|.
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~-i~i~~LPrearL~ 85 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFP-IPVCQLPRESRLV 85 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECc-cchhcCChhHEEE
Confidence 45788999999999987655567899999885433211 223443221 12357799999994 6655554 47899
Q ss_pred EEEEEcCCCC---------C-cceeeEEecCccc
Q psy12136 203 ILVLDDDKYG---------H-DFLGEARFPLNRL 226 (399)
Q Consensus 203 ~~V~d~~~~~---------~-~~lG~~~i~l~~l 226 (399)
|++|+....+ . ..||.+.++|-+.
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9999866543 3 7899999998774
No 263
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.97 E-value=0.2 Score=41.51 Aligned_cols=102 Identities=18% Similarity=0.255 Sum_probs=64.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccc-cCCCCCeecceEEeceeCc------ccCCCceEEE
Q psy12136 131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC-LRTINPEFHEKLTFYSVSE------TDLSLQSLHI 203 (399)
Q Consensus 131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~-~~t~nP~wne~f~f~~v~~------~~l~~~~L~~ 203 (399)
++.|.|.++.+++... ...||+..... .......|... ...-.-.|||.|.+. +.. ..+....+.|
T Consensus 8 ~~~l~i~~l~~~p~~~----~~v~v~wkr~~--~~~~~~~t~~~~~~~~~v~w~e~~~~~-~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 8 QFDLTIHELENLPSSN----GKVFVKWKRGD--KSKGSGTTSRANVKNGKVQWNEEFSFP-CTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred EEEEEEEEeECcCCCC----CEEEEEEEECC--CCccceeeeeeeccccEEEEeeEEEEE-EEEEEcCCCCcEeeEEEEE
Confidence 6789999999988721 33444444322 11112333332 234457899999884 331 2256678999
Q ss_pred EEEEcCCCCC-cceeeEEecCcccCCC--cceeEEEeec
Q psy12136 204 LVLDDDKYGH-DFLGEARFPLNRLRPH--ISRDLCLNLC 239 (399)
Q Consensus 204 ~V~d~~~~~~-~~lG~~~i~l~~l~~~--~~~~~~~~L~ 239 (399)
.|+.....++ ..+|.+.|+|+++... ......+.|.
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~ 119 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLK 119 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCc
Confidence 9998865555 5999999999998864 3455555554
No 264
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=95.84 E-value=0.086 Score=45.47 Aligned_cols=79 Identities=14% Similarity=0.038 Sum_probs=53.5
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCC-CceEEEEEEE
Q psy12136 129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILVLD 207 (399)
Q Consensus 129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~-~~~L~~~V~d 207 (399)
...++|+|+.+.++.. +......-||++.|-.++.-....+|....-+.++.|||.+.| .|...+|. ...|.|.||+
T Consensus 9 ~~~friki~~~~~~~~-~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f-~I~~~dLP~~arLc~ti~~ 86 (178)
T cd08399 9 DRKFRVKILGIDIPVL-PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEF-DIKIKDLPKGALLNLQIYC 86 (178)
T ss_pred CCCEEEEEEeecccCc-CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEEC-ccccccCChhhEEEEEEEE
Confidence 4478888998874432 2233345677776654333333446776666778999999999 47766665 4789999999
Q ss_pred cC
Q psy12136 208 DD 209 (399)
Q Consensus 208 ~~ 209 (399)
..
T Consensus 87 ~~ 88 (178)
T cd08399 87 GK 88 (178)
T ss_pred Ee
Confidence 64
No 265
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=95.77 E-value=0.053 Score=45.11 Aligned_cols=73 Identities=18% Similarity=0.154 Sum_probs=51.7
Q ss_pred CcEEEEEEecCCCC-c--eEeecceeCC-CCceecceEEEEeccCccc-ccEEEEEEEeCCCCCCC----eeeEEEEEcc
Q psy12136 295 DPFIKLYLKPDLHK-R--KYKTGVKWKT-LNPIFNEEFAIETKITELS-KQTLVITVWDKDYGKSN----DYLGCLELCC 365 (399)
Q Consensus 295 dpyV~v~l~~~~~~-~--~~kT~v~~~t-~nP~wne~f~f~v~~~~l~-~~~l~i~V~d~~~~~~d----~~lG~~~i~l 365 (399)
+-||.+.+..++.. . ...|.....+ .++.|||.+.|++...++. +..|.|+||..+..... ..||.+.+.+
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 45777777654433 2 3367766666 7999999999998766665 46799999998765544 7999999997
Q ss_pred CC
Q psy12136 366 NS 367 (399)
Q Consensus 366 ~~ 367 (399)
-+
T Consensus 83 Fd 84 (142)
T PF00792_consen 83 FD 84 (142)
T ss_dssp B-
T ss_pred EC
Confidence 65
No 266
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=95.74 E-value=0.058 Score=41.94 Aligned_cols=76 Identities=18% Similarity=0.206 Sum_probs=51.9
Q ss_pred EEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC--ceEeecceeCCCCceecceEEEEeccCccc-ccEEEEEEEeCC
Q psy12136 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDKD 350 (399)
Q Consensus 275 L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l~-~~~l~i~V~d~~ 350 (399)
+.+.+..+.+.........++-||++.+..++.. ....|..+.....+.|||.+.|++...++. ++.|.|+||+..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~ 91 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK 91 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence 5566777776655433333589999988754322 234555555556689999999998776665 468999999865
No 267
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=95.53 E-value=0.061 Score=45.62 Aligned_cols=77 Identities=21% Similarity=0.160 Sum_probs=56.7
Q ss_pred CCCCcEEEEEEecCCC-CCceEecccccCCCCCeecceEEeceeCcccCC-CceEEEEEEEcCCCCC-cceeeEEecCcc
Q psy12136 149 GTSDPFCKLNLVPLTK-TSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILVLDDDKYGH-DFLGEARFPLNR 225 (399)
Q Consensus 149 ~~~dpyv~v~l~~~~~-~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~-~~~L~~~V~d~~~~~~-~~lG~~~i~l~~ 225 (399)
..+|-||.+.+-.++. -.....|+.+.-+..+.|||...|+ |...+|. +..|.|+||+....++ ..+|.+.++|-+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fp-I~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLP-IKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcc-cchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 3478888888754332 1223466666666778999999995 7766664 4789999999876666 889999999977
Q ss_pred c
Q psy12136 226 L 226 (399)
Q Consensus 226 l 226 (399)
-
T Consensus 107 ~ 107 (159)
T cd08397 107 K 107 (159)
T ss_pred C
Confidence 5
No 268
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.11 E-value=0.47 Score=39.23 Aligned_cols=90 Identities=19% Similarity=0.185 Sum_probs=58.2
Q ss_pred eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecce-eCCCCceecceEEEEeccC------cccccEEEEE
Q psy12136 273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVK-WKTLNPIFNEEFAIETKIT------ELSKQTLVIT 345 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~-~~t~nP~wne~f~f~v~~~------~l~~~~l~i~ 345 (399)
..+.+.|.+..+++. ....-||++..+... ....+|... ..+..-.|||.|.+.+... .+....+.|.
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~-~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKS-KGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEECCCC-ccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 567889999999876 223445555443211 013344433 3345578999999986531 2555678999
Q ss_pred EEeCCCCCCCeeeEEEEEccCC
Q psy12136 346 VWDKDYGKSNDYLGCLELCCNS 367 (399)
Q Consensus 346 V~d~~~~~~d~~lG~~~i~l~~ 367 (399)
|+.....++...||.+.|+|.+
T Consensus 82 v~~~~~~~~k~~lG~~~inLae 103 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAE 103 (143)
T ss_pred EEEecCCCccceEEEEEEEHHH
Confidence 9987533333689999999986
No 269
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=95.11 E-value=0.39 Score=41.81 Aligned_cols=61 Identities=25% Similarity=0.356 Sum_probs=39.9
Q ss_pred ceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCC---CeeeEEEEEccCCCC
Q psy12136 309 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS---NDYLGCLELCCNSKG 369 (399)
Q Consensus 309 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~---d~~lG~~~i~l~~~~ 369 (399)
..+.|.+...+.+|.|+|+|.+.++.....+..|.|++++.....+ ...+|.+.++|-..+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~~g 122 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMDNG 122 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-TS
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeeeCC
Confidence 6778888889999999999999999877777899999999764321 169999999987633
No 270
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=95.01 E-value=0.25 Score=42.89 Aligned_cols=58 Identities=12% Similarity=0.191 Sum_probs=45.6
Q ss_pred CceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCCC--C-cceeeEEecCc
Q psy12136 166 SHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG--H-DFLGEARFPLN 224 (399)
Q Consensus 166 ~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~~--~-~~lG~~~i~l~ 224 (399)
...++|.+.....+|.|+|++.+ .++.+.....-|.|++++..... . ..+|-+.+||-
T Consensus 52 ~se~~S~V~yH~~~P~W~EtiKi-~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 52 CSEYRSFVLYHNNSPRWNETIKL-PIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred cceEEEEEEEcCCCCCCceeEEE-ecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 45678999999999999999999 79999988899999888754332 2 45676666663
No 271
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=94.84 E-value=0.31 Score=42.51 Aligned_cols=58 Identities=9% Similarity=0.116 Sum_probs=45.4
Q ss_pred CceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCCC----C-cceeeEEecCc
Q psy12136 166 SHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG----H-DFLGEARFPLN 224 (399)
Q Consensus 166 ~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~~----~-~~lG~~~i~l~ 224 (399)
....+|.+.....+|.|+|++.+ .++.+.....-|.|++++..... . ..+|-+.+||-
T Consensus 52 ~se~~S~V~Yh~~~P~W~EtIKl-~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 52 IDEYKSVIYYQVDKPKWFETFKV-AIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred ceeEEEEEEeecCCCCCceeEEE-ecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 45788889889999999999999 79999998899999998854321 1 34666666663
No 272
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=94.59 E-value=0.69 Score=40.24 Aligned_cols=59 Identities=14% Similarity=0.183 Sum_probs=39.0
Q ss_pred CceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCCCC----cceeeEEecCcc
Q psy12136 166 SHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH----DFLGEARFPLNR 225 (399)
Q Consensus 166 ~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~~~----~~lG~~~i~l~~ 225 (399)
.....|.+..++.+|.|+|+|.+ .++.......-|.|++++...... ..+|-+.+||-+
T Consensus 58 ~~~~~S~v~yh~k~P~f~deiKi-~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 58 VTSYYSSVYYHNKNPQFNDEIKI-QLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp BS-EE----TT-SS-EEEEEEEE-EE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred ceEEEEEEEecCCCCCccEEEEE-EcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 35678888889999999999999 688887778899999998654421 589999999988
No 273
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=94.08 E-value=0.39 Score=37.27 Aligned_cols=79 Identities=20% Similarity=0.150 Sum_probs=53.2
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCC-ceEecccccCCCCCeecceEEeceeCcccCC-CceEEEEEEEc
Q psy12136 131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTS-HRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILVLDD 208 (399)
Q Consensus 131 ~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~-~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~-~~~L~~~V~d~ 208 (399)
.+.+.+..+.++.........+-||.+.+-.++... ....|..+.-...+.|||...|+ +...++. ...|.|+||+.
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~-i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 12 NLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFP-IQISDLPREARLCITIYEV 90 (100)
T ss_pred ceEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEcc-CchhcCChhhEEEEEEEEe
Confidence 366777777777655433335899999886533211 23456555556669999999994 7766654 47899999986
Q ss_pred CC
Q psy12136 209 DK 210 (399)
Q Consensus 209 ~~ 210 (399)
..
T Consensus 91 ~~ 92 (100)
T smart00142 91 KN 92 (100)
T ss_pred eC
Confidence 43
No 274
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=94.05 E-value=0.19 Score=43.67 Aligned_cols=58 Identities=14% Similarity=0.181 Sum_probs=47.6
Q ss_pred ceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCC--CCeeeEEEEEccC
Q psy12136 309 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK--SNDYLGCLELCCN 366 (399)
Q Consensus 309 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~--~d~~lG~~~i~l~ 366 (399)
..++|-|...+.+|.|||++.+.++.+...+..|.|++++..... ....+|-+.++|-
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 568899999999999999999999988888899999988855321 1257998888874
No 275
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=93.66 E-value=0.54 Score=39.04 Aligned_cols=75 Identities=21% Similarity=0.177 Sum_probs=51.1
Q ss_pred CcEEEEEEecCCCCCc--eEecccccCC-CCCeecceEEeceeCcccCC-CceEEEEEEEcCCCCC-----cceeeEEec
Q psy12136 152 DPFCKLNLVPLTKTSH--RLRTKTCLRT-INPEFHEKLTFYSVSETDLS-LQSLHILVLDDDKYGH-----DFLGEARFP 222 (399)
Q Consensus 152 dpyv~v~l~~~~~~~~--~~rT~~~~~t-~nP~wne~f~f~~v~~~~l~-~~~L~~~V~d~~~~~~-----~~lG~~~i~ 222 (399)
+.||.+.|-.++.... ...|....-+ .++.|||.+.|+ +...++. ...|.|+||..+.... ..||.+.++
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~-i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~ 81 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFP-IPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLP 81 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEE-EEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEE
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEee-cChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEE
Confidence 4567777754333223 3467776666 799999999994 7766664 4789999998776544 489999999
Q ss_pred CcccC
Q psy12136 223 LNRLR 227 (399)
Q Consensus 223 l~~l~ 227 (399)
|-+..
T Consensus 82 lFd~~ 86 (142)
T PF00792_consen 82 LFDYR 86 (142)
T ss_dssp SB-TT
T ss_pred eECCC
Confidence 98763
No 276
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=93.56 E-value=0.28 Score=42.74 Aligned_cols=58 Identities=16% Similarity=0.211 Sum_probs=47.4
Q ss_pred ceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCC----CCeeeEEEEEccC
Q psy12136 309 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK----SNDYLGCLELCCN 366 (399)
Q Consensus 309 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~----~d~~lG~~~i~l~ 366 (399)
..++|-|...+.+|.|+|++...|+.+...+..|.|++++..... ....+|-+.++|-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 678899999999999999999999988888899999998865321 1246888888864
No 277
>KOG1452|consensus
Probab=93.09 E-value=0.44 Score=44.04 Aligned_cols=82 Identities=22% Similarity=0.169 Sum_probs=58.0
Q ss_pred EEEeCCCCEEEEEEEEecCCCCCCC--CCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCce
Q psy12136 123 VTYDSTTCSLHVTLHRAKGLRAMDI--HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQS 200 (399)
Q Consensus 123 l~y~~~~~~L~V~V~~a~~L~~~~~--~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~ 200 (399)
++.....+.|.++++.+|+|..... .-..+-||.+... ...+.||.+.....--.|.|+|..+ +- ....
T Consensus 44 l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~d----rqh~aRt~vrs~~~~f~w~e~F~~D-vv----~~~v 114 (442)
T KOG1452|consen 44 LRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPD----RQHPARTRVRSSGPGFAWAEDFKHD-VV----NIEV 114 (442)
T ss_pred eeeecccceEEEEEecccccccChhccCceeeeeeeeeec----ccCccccccccCCCCccchhhceee-cc----ccee
Confidence 4444567899999999999975433 3356788887764 2356677666666667789999873 32 2367
Q ss_pred EEEEEEEcCCCCC
Q psy12136 201 LHILVLDDDKYGH 213 (399)
Q Consensus 201 L~~~V~d~~~~~~ 213 (399)
+.+-||.|+...+
T Consensus 115 l~~lvySW~pq~R 127 (442)
T KOG1452|consen 115 LHYLVYSWPPQRR 127 (442)
T ss_pred eeEEEeecCchhh
Confidence 8899999987754
No 278
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=88.82 E-value=5 Score=30.38 Aligned_cols=63 Identities=17% Similarity=0.139 Sum_probs=41.7
Q ss_pred CCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCCCCcceeeEEecCcc
Q psy12136 151 SDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNR 225 (399)
Q Consensus 151 ~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~~~~~lG~~~i~l~~ 225 (399)
.+..+.+.+. +.....|.-. ...+..|++.|.+ .+... ..|.|.||=+|. +.+.|-..+.|.+
T Consensus 9 ~eV~avLklD----n~~VgqT~Wk-~~s~q~WDQ~Fti-~LdRs----RELEI~VywrD~--RslCav~~lrLEd 71 (98)
T cd08687 9 SEVSAVLKLD----NTVVGQTQWK-PKSNQAWDQSFTL-ELERS----RELEIAVYWRDW--RSLCAVKFLKLED 71 (98)
T ss_pred cceEEEEEEc----CeEEeecccc-ccccccccceeEE-Eeecc----cEEEEEEEEecc--hhhhhheeeEhhh
Confidence 4666677764 2345566554 3357889999998 45433 789999996654 2456666677776
No 279
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=88.79 E-value=1.5 Score=37.90 Aligned_cols=61 Identities=20% Similarity=0.236 Sum_probs=48.1
Q ss_pred ceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCCCC------CeeeEEEEEccCCCC
Q psy12136 309 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS------NDYLGCLELCCNSKG 369 (399)
Q Consensus 309 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~------d~~lG~~~i~l~~~~ 369 (399)
....|.|...+.+|.|+|++...++.....+..|.|+.++..-..+ ...+|-+.++|-..+
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~~g 120 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLRNG 120 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeecCC
Confidence 6788999999999999999999998776677889999998553211 246999998876533
No 280
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=88.29 E-value=1.3 Score=38.37 Aligned_cols=57 Identities=23% Similarity=0.333 Sum_probs=43.2
Q ss_pred eEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCC-----CCCeeeEEEEEccCC
Q psy12136 310 KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG-----KSNDYLGCLELCCNS 367 (399)
Q Consensus 310 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~-----~~d~~lG~~~i~l~~ 367 (399)
.++|-+..+ .+|.|+|+|...++.....+..|.|++++.... .....+|-+.++|-.
T Consensus 54 ~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 344444444 899999999999976655678999999987632 335689999999875
No 281
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=86.18 E-value=2.8 Score=36.36 Aligned_cols=59 Identities=22% Similarity=0.195 Sum_probs=46.9
Q ss_pred ceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCC--CC-------CCeeeEEEEEccCC
Q psy12136 309 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY--GK-------SNDYLGCLELCCNS 367 (399)
Q Consensus 309 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~--~~-------~d~~lG~~~i~l~~ 367 (399)
....|.|...+.+|.|+|++...++.....+..|.|+.++..- .. ....+|-+.++|-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 5778899999999999999999998776677889999998652 11 12469998888754
No 282
>KOG1452|consensus
Probab=86.00 E-value=2.5 Score=39.25 Aligned_cols=84 Identities=12% Similarity=0.017 Sum_probs=57.5
Q ss_pred EeeeccceeEEEEEEeeecCCCCCC--CCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEE
Q psy12136 266 LCFSTKKRALIVNLIKCTNLIPMDS--NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLV 343 (399)
Q Consensus 266 l~~~~~~~~L~v~v~~a~~L~~~~~--~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~ 343 (399)
+......|.|.++++.+|+|..... +-+.+-|+.+.... ..+.+|.+.....--.|.|.|..++.. ...+.
T Consensus 44 l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~dr---qh~aRt~vrs~~~~f~w~e~F~~Dvv~----~~vl~ 116 (442)
T KOG1452|consen 44 LRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDR---QHPARTRVRSSGPGFAWAEDFKHDVVN----IEVLH 116 (442)
T ss_pred eeeecccceEEEEEecccccccChhccCceeeeeeeeeecc---cCccccccccCCCCccchhhceeeccc----ceeee
Confidence 3444567999999999999964432 44568888887741 245566665555556788988877652 35788
Q ss_pred EEEEeCCCCCCCe
Q psy12136 344 ITVWDKDYGKSND 356 (399)
Q Consensus 344 i~V~d~~~~~~d~ 356 (399)
+-||.|+.-.++.
T Consensus 117 ~lvySW~pq~RHK 129 (442)
T KOG1452|consen 117 YLVYSWPPQRRHK 129 (442)
T ss_pred EEEeecCchhhcc
Confidence 8899998654444
No 283
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=84.99 E-value=6.2 Score=33.73 Aligned_cols=67 Identities=18% Similarity=0.280 Sum_probs=49.4
Q ss_pred CCcEEEEEEecCCCCceEeecceeC--CCCceecceEEEEeccCcccccEEEEEEEeCCCCCCCeeeEEEEEccCC
Q psy12136 294 SDPFIKLYLKPDLHKRKYKTGVKWK--TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS 367 (399)
Q Consensus 294 ~dpyV~v~l~~~~~~~~~kT~v~~~--t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~ 367 (399)
..-|+++.+. ++...+|+...- ...-.|||.|.+.+.. .. ..|.|+||.... ..+..|+++.|++-.
T Consensus 37 ~~~~ikl~~N---~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~--~P-esi~l~i~E~~~-~~~~~la~v~vpvP~ 105 (168)
T PF15625_consen 37 TRYYIKLFFN---DKEVSRTRSRPLWSDFRVHFNEIFNVQITR--WP-ESIKLEIYEKSG-LSDRLLAEVFVPVPG 105 (168)
T ss_pred eeEEEEEEEC---CEEEEeeeeEecCCCeEEeccCEEEEEEec--CC-CEEEEEEEEccC-ccceEEEEEEeeCCC
Confidence 4568888884 236666665443 3346789999988863 32 689999999887 568899999999765
No 284
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=84.63 E-value=17 Score=31.01 Aligned_cols=70 Identities=14% Similarity=0.211 Sum_probs=49.3
Q ss_pred CCCcEEEEEEecCCCCCceEecccccCC--CCCeecceEEeceeCcccCCCceEEEEEEEcCCCCCcceeeEEecCcccC
Q psy12136 150 TSDPFCKLNLVPLTKTSHRLRTKTCLRT--INPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLR 227 (399)
Q Consensus 150 ~~dpyv~v~l~~~~~~~~~~rT~~~~~t--~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~~~~~lG~~~i~l~~l~ 227 (399)
...-|++|.+. +....+|+...-+ ..-.|||.|.+ .+.. + -..|.+.||.....++.+|+++.+|+-...
T Consensus 36 ~~~~~ikl~~N----~k~V~~T~~~~l~~dF~v~f~~~f~v-~i~~--~-Pesi~l~i~E~~~~~~~~la~v~vpvP~~~ 107 (168)
T PF15625_consen 36 KTRYYIKLFFN----DKEVSRTRSRPLWSDFRVHFNEIFNV-QITR--W-PESIKLEIYEKSGLSDRLLAEVFVPVPGST 107 (168)
T ss_pred heeEEEEEEEC----CEEEEeeeeEecCCCeEEeccCEEEE-EEec--C-CCEEEEEEEEccCccceEEEEEEeeCCCCc
Confidence 35678888886 3456666664432 23567899988 4543 2 378999999988855599999999987654
No 285
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=83.04 E-value=19 Score=31.28 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=45.0
Q ss_pred CceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC---------CC-cceeeEEecCcc
Q psy12136 166 SHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY---------GH-DFLGEARFPLNR 225 (399)
Q Consensus 166 ~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~---------~~-~~lG~~~i~l~~ 225 (399)
.....|.+..++.+|.|+|++.+ .++.......-|.|+.++.... .. ..+|-+.+||-.
T Consensus 55 ~~~~~s~V~yh~k~P~f~dEiKI-~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 55 TTSAYAAVLHHNQNPEFYDEIKI-ELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred ceEEEEEEEEcCCCCccceeEEE-ecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 45678888889999999999999 6887777778899999986521 11 447777777654
No 286
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=82.72 E-value=4.5 Score=31.79 Aligned_cols=62 Identities=18% Similarity=0.153 Sum_probs=33.6
Q ss_pred CceEecccccCCCCCeecceEEeceeCcccC-----CCceEEEEEEEcCCCCC-cceeeEEecCcccCCCc
Q psy12136 166 SHRLRTKTCLRTINPEFHEKLTFYSVSETDL-----SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI 230 (399)
Q Consensus 166 ~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l-----~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~~~ 230 (399)
-+.+.|.++. +.+|.||-+-.| .|..+++ ....+.++++..- ..+ ..+|.+.+++..+....
T Consensus 10 fEtq~Tpvv~-G~~p~y~fts~y-~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll~~~ 77 (107)
T PF11618_consen 10 FETQTTPVVR-GLNPFYDFTSQY-KVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLLESN 77 (107)
T ss_dssp ---EE---EE-SSS----EEEEE-EE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH--
T ss_pred eeeeccccee-CCCccceeEEEE-EEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhhcCC
Confidence 4567777775 889999998888 6776653 4578899999866 455 89999999999987443
No 287
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=81.71 E-value=3.5 Score=35.58 Aligned_cols=56 Identities=14% Similarity=0.180 Sum_probs=41.2
Q ss_pred eEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC-----CC-cceeeEEecCcc
Q psy12136 168 RLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY-----GH-DFLGEARFPLNR 225 (399)
Q Consensus 168 ~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~-----~~-~~lG~~~i~l~~ 225 (399)
.++|-+..+ .+|.|+|+|.. .++.......-|.|++++.... .. ..+|-+.+||-+
T Consensus 54 ~~~sv~~~~-k~p~f~deiKi-~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYYH-KNPVFNDEIKI-QLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEcC-CCCCCceeEEE-ecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 344444444 89999999999 6876665778999999986532 23 678888888875
No 288
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=79.17 E-value=34 Score=29.13 Aligned_cols=86 Identities=15% Similarity=0.092 Sum_probs=57.9
Q ss_pred EEEEEeeecCCCCCCCCCCCcEEEEEEecCCC------Cc-eEeecceeC-----CCCceecceEEEEeccCcccc-cEE
Q psy12136 276 IVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH------KR-KYKTGVKWK-----TLNPIFNEEFAIETKITELSK-QTL 342 (399)
Q Consensus 276 ~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~------~~-~~kT~v~~~-----t~nP~wne~f~f~v~~~~l~~-~~l 342 (399)
.-.|..|.+.. ..+.||+..+.-..+ .. ...|.+.+. ...-.||..|.+......+.. ..|
T Consensus 5 ~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L 78 (168)
T PF07162_consen 5 IGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQL 78 (168)
T ss_pred EEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceE
Confidence 34566777553 246788888653221 12 456665443 234689998888876555544 689
Q ss_pred EEEEEeCCCCCCCeeeEEEEEccCC
Q psy12136 343 VITVWDKDYGKSNDYLGCLELCCNS 367 (399)
Q Consensus 343 ~i~V~d~~~~~~d~~lG~~~i~l~~ 367 (399)
.|+||..|..+++.+.|...+.+-.
T Consensus 79 ~l~V~~~D~~gr~~~~GYG~~~lP~ 103 (168)
T PF07162_consen 79 VLQVYSLDSWGRDRVEGYGFCHLPT 103 (168)
T ss_pred EEEEEEEcccCCeEEeEEeEEEeCC
Confidence 9999999999999999886666543
No 289
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=78.27 E-value=5.6 Score=34.35 Aligned_cols=58 Identities=12% Similarity=0.110 Sum_probs=43.5
Q ss_pred CceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCCC------C-cceeeEEecCc
Q psy12136 166 SHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG------H-DFLGEARFPLN 224 (399)
Q Consensus 166 ~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~~------~-~~lG~~~i~l~ 224 (399)
.....|.|..++.+|.|+|++.. .++.......-|.|+.++..... . ..+|-+.+||-
T Consensus 53 ~~~~~S~V~yHnk~P~f~DEiKi-~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 53 LTEAYTAVTYHNKSPDFYDEIKI-KLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred ceeEEEEEEEeCCCCcccceEEE-EcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 35678888889999999999998 68877777788999999854321 1 34666666654
No 290
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=76.39 E-value=39 Score=27.32 Aligned_cols=91 Identities=16% Similarity=0.245 Sum_probs=52.3
Q ss_pred eeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCcee-cceEEEEeccCcccccEEEEEEEeCCC
Q psy12136 273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIF-NEEFAIETKITELSKQTLVITVWDKDY 351 (399)
Q Consensus 273 ~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~w-ne~f~f~v~~~~l~~~~l~i~V~d~~~ 351 (399)
..|.+.-+.-.++|..+..+.+.||++|+-.. .....|...... .... ...+.|.+...-.-...+.|.+|+...
T Consensus 4 ~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~---~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~~ 79 (134)
T PF10409_consen 4 RPLFLKSIILHGIPNFNSGGGCRPYIEIYNGG---KKVFSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKRS 79 (134)
T ss_dssp -EEEEEEEEEES-TTSTTSSCCTEEEEEEETT---EEEEETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECET
T ss_pred eeEEEEEEEEECCCccCCCCCEEEEEEEECCC---ccEEEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCCC
Confidence 34556666667777766667789999998732 122223322221 1222 233444443222224789999999873
Q ss_pred -CCCCeeeEEEEEccCC
Q psy12136 352 -GKSNDYLGCLELCCNS 367 (399)
Q Consensus 352 -~~~d~~lG~~~i~l~~ 367 (399)
...++.+.++++.-.-
T Consensus 80 ~~~~~~~~f~~~FnT~F 96 (134)
T PF10409_consen 80 SSMSKEKMFRFWFNTGF 96 (134)
T ss_dssp TECCCEEEEEEEEEGGG
T ss_pred cccccCeEEEEEEeeee
Confidence 4467789999988543
No 291
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=75.83 E-value=23 Score=29.47 Aligned_cols=110 Identities=16% Similarity=0.124 Sum_probs=54.9
Q ss_pred eccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCC---ceEeeccee--CCCCceecceEEEEeccCccc-ccEE
Q psy12136 269 STKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK---RKYKTGVKW--KTLNPIFNEEFAIETKITELS-KQTL 342 (399)
Q Consensus 269 ~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~---~~~kT~v~~--~t~nP~wne~f~f~v~~~~l~-~~~l 342 (399)
.+....|.|.|.+.. | .|.....|||+.|++....+. ..+.|.+.. ...--.||...+.+.+.+.+. +..|
T Consensus 9 ~~g~t~l~v~Iekig-l--kda~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai 85 (147)
T PF14186_consen 9 EPGMTYLSVFIEKIG-L--KDASQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAI 85 (147)
T ss_dssp -TT--EEEEEEEEEE----TTGGG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EE
T ss_pred CCCCceEEEEEEEEE-E--CChHHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEE
Confidence 344566777776665 5 345566899999999876655 456677642 223345777666666555555 3568
Q ss_pred EEEEEeCCCCCCCe-eeEEEEEccCCCCCcchhhhhhhcCC
Q psy12136 343 VITVWDKDYGKSND-YLGCLELCCNSKGDRLRHWVDMMKYP 382 (399)
Q Consensus 343 ~i~V~d~~~~~~d~-~lG~~~i~l~~~~~~~~~w~~l~~~p 382 (399)
.|++.++..-.+.. ..+-+-+.+++...+ .--.+|+..|
T Consensus 86 ~fE~kH~K~kk~k~S~kcw~fme~dei~~g-~~~lely~KP 125 (147)
T PF14186_consen 86 FFEFKHYKPKKKKTSTKCWAFMELDEIKPG-PVVLELYKKP 125 (147)
T ss_dssp EEEEEEEETTTTCEEEEEEEEEEGGG--SE-EEEE--EESS
T ss_pred EEEEEeeeccceeeeeeEEEEEEhhhccCC-ceeeehhcCC
Confidence 89999987544333 344455556654332 2233444444
No 292
>KOG4027|consensus
Probab=71.76 E-value=49 Score=27.74 Aligned_cols=75 Identities=19% Similarity=0.052 Sum_probs=44.1
Q ss_pred CCCcEEEEEEecCCC-C--------ceEeecceeCCCCc-eecceEEEEeccCccc-ccEEEEEEEeCCCCCCCeeeEEE
Q psy12136 293 FSDPFIKLYLKPDLH-K--------RKYKTGVKWKTLNP-IFNEEFAIETKITELS-KQTLVITVWDKDYGKSNDYLGCL 361 (399)
Q Consensus 293 ~~dpyV~v~l~~~~~-~--------~~~kT~v~~~t~nP-~wne~f~f~v~~~~l~-~~~l~i~V~d~~~~~~d~~lG~~ 361 (399)
-+|.|++.++--... + ....+...+.-.|| +||-.|+-......+. =..|.+.||-.|..++|.+.|..
T Consensus 25 ~~dv~~ky~~Vag~DW~~~~Gpqegvsq~s~~~r~~~~~iv~n~Pievt~KstsPygWPqivl~vfg~d~~G~d~v~GYg 104 (187)
T KOG4027|consen 25 ESDVCVKYSTVAGGDWKIINGPQEGVSQSSFSFRGADNQIVINLPIEVTLKSTSPYGWPQIVLNVFGKDHSGKDCVTGYG 104 (187)
T ss_pred CCceEEEEEEEecCCceeccCcccchhhheeccccCCCceEEecceEEEeccCCCCCCceEEEEEecCCcCCcceeeeee
Confidence 367888877542111 1 12222222233444 4665544443322222 25799999999999999999998
Q ss_pred EEccCC
Q psy12136 362 ELCCNS 367 (399)
Q Consensus 362 ~i~l~~ 367 (399)
.|.+-.
T Consensus 105 ~~hiP~ 110 (187)
T KOG4027|consen 105 MLHIPT 110 (187)
T ss_pred eEecCc
Confidence 888754
No 293
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=70.32 E-value=22 Score=29.62 Aligned_cols=99 Identities=12% Similarity=0.095 Sum_probs=53.6
Q ss_pred CCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecC-C-CCCceEecccc--cCCCCCeecceEEeceeCcccCC-CceE
Q psy12136 127 STTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPL-T-KTSHRLRTKTC--LRTINPEFHEKLTFYSVSETDLS-LQSL 201 (399)
Q Consensus 127 ~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~-~-~~~~~~rT~~~--~~t~nP~wne~f~f~~v~~~~l~-~~~L 201 (399)
+....|.|.|.+.. |. |.....|||+.|++... + .-...+.|.+. +....-.||..... ..+.+.+. ...+
T Consensus 10 ~g~t~l~v~Iekig-lk--da~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~l-qtple~lp~Gaai 85 (147)
T PF14186_consen 10 PGMTYLSVFIEKIG-LK--DASQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHL-QTPLEKLPKGAAI 85 (147)
T ss_dssp TT--EEEEEEEEEE--T--TGGG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE--SS-GGGS-TT-EE
T ss_pred CCCceEEEEEEEEE-EC--ChHHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEE-cCCHHHCCCceEE
Confidence 34456777777765 43 33455799999999652 2 12335556653 22334567766666 34555554 3678
Q ss_pred EEEEEEcCCCCC--cceeeEEecCcccCCC
Q psy12136 202 HILVLDDDKYGH--DFLGEARFPLNRLRPH 229 (399)
Q Consensus 202 ~~~V~d~~~~~~--~~lG~~~i~l~~l~~~ 229 (399)
-|++.++....+ ...+-+.+.++++..+
T Consensus 86 ~fE~kH~K~kk~k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 86 FFEFKHYKPKKKKTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp EEEEEEEETTTTCEEEEEEEEEEGGG--SE
T ss_pred EEEEEeeeccceeeeeeEEEEEEhhhccCC
Confidence 889999776655 5567777888887765
No 294
>KOG0906|consensus
Probab=65.26 E-value=9.1 Score=39.29 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=38.8
Q ss_pred ceecceEEEEeccCccc-ccEEEEEEEeCCCCCCCeeeEEEEEccCC
Q psy12136 322 PIFNEEFAIETKITELS-KQTLVITVWDKDYGKSNDYLGCLELCCNS 367 (399)
Q Consensus 322 P~wne~f~f~v~~~~l~-~~~l~i~V~d~~~~~~d~~lG~~~i~l~~ 367 (399)
-.|||-+++++...++. +..+.|++||....+...++|..++.+..
T Consensus 77 ~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 77 INWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred cchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 35999999998877776 46899999998877778899999998774
No 295
>KOG1329|consensus
Probab=59.59 E-value=1.4e+02 Score=32.25 Aligned_cols=82 Identities=9% Similarity=0.018 Sum_probs=62.0
Q ss_pred CCcEEEEEEecCCCCCceEecccccCC-CCCeecceEEeceeCcccCCCceEEEEEEEcCCCCC-cceeeEEecCcccCC
Q psy12136 151 SDPFCKLNLVPLTKTSHRLRTKTCLRT-INPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 228 (399)
Q Consensus 151 ~dpyv~v~l~~~~~~~~~~rT~~~~~t-~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~l~~ 228 (399)
.++|+.+.|. .....+|....+. .+|.|.+.|... .... ...+.+.|-+.+..+- ..+|.+.++...+..
T Consensus 138 ~e~Ylt~~l~----~~~~~~t~~~~~f~e~s~~~f~~~~~-~~h~---~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~ 209 (887)
T KOG1329|consen 138 LENYLTVVLH----KARYRRTHVIYEFLENSRWSFSFDIG-FAHK---AGYVIFRVKGARVPGWSKRWGRVKISFLQYCS 209 (887)
T ss_pred ccchheeeec----hhhhhchhhhhcccccchhhhhcccc-cccc---ccEEEEeecCCccccceeEEEEeccchhhhhc
Confidence 4889999885 3455677777666 889999998762 2222 3678899999888884 999999999999988
Q ss_pred CcceeEEEeecc
Q psy12136 229 HISRDLCLNLCK 240 (399)
Q Consensus 229 ~~~~~~~~~L~~ 240 (399)
+.....|+.+..
T Consensus 210 ~~~~~~~~~Il~ 221 (887)
T KOG1329|consen 210 GHRIGGWFPILD 221 (887)
T ss_pred cccccceeeeec
Confidence 766666766654
No 296
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=58.99 E-value=22 Score=27.94 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=31.7
Q ss_pred ceEeecceeCCCCceecceEEEEeccCc-----ccccEEEEEEEeCCCCCCCeeeEEEEEccCC
Q psy12136 309 RKYKTGVKWKTLNPIFNEEFAIETKITE-----LSKQTLVITVWDKDYGKSNDYLGCLELCCNS 367 (399)
Q Consensus 309 ~~~kT~v~~~t~nP~wne~f~f~v~~~~-----l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~ 367 (399)
+.+.|.++. ..+|.||-+-.|.|..++ +....+.|+++..-. .....||.+.|.+..
T Consensus 11 Etq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ 72 (107)
T PF11618_consen 11 ETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRP 72 (107)
T ss_dssp --EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SH
T ss_pred eeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechh
Confidence 678888887 689999999999987543 345789999998663 347799999999864
No 297
>KOG0694|consensus
Probab=56.33 E-value=4.2 Score=41.96 Aligned_cols=67 Identities=15% Similarity=0.113 Sum_probs=42.3
Q ss_pred CCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCCCC-cceeeEEecCcc
Q psy12136 150 TSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNR 225 (399)
Q Consensus 150 ~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~~~-~~lG~~~i~l~~ 225 (399)
..+||+-|.+.- .+...+.+.+.+..|.|+++|... +... ..+.|.|+....... .+...+++-..+
T Consensus 27 al~~y~~v~vk~----~~~~~~~~~~~~~~~~~~~~F~~~-v~~~----~~~~i~v~~~~~~~~~~~~a~~~~~~e~ 94 (694)
T KOG0694|consen 27 ALQPYLAVELKV----KQGAENMTKVELRIPELRETFHVE-VVAG----GAKNIIVLLKSPDPKALSEAQLSLQEES 94 (694)
T ss_pred hhhhhheeccce----eecccccCCCCCCCchhhhheeee-eecC----CceEEEEEecCCcchhhHHHhHHHHHHH
Confidence 468898888742 223344557789999999999983 4433 578888887654433 333343333333
No 298
>KOG1329|consensus
Probab=54.65 E-value=9.8 Score=40.56 Aligned_cols=85 Identities=14% Similarity=0.214 Sum_probs=62.9
Q ss_pred CCCcEEEEEEecCCCCceEeecceeCC-CCceecceEEEEeccCcccccEEEEEEEeCCCCCCCeeeEEEEEccCC--CC
Q psy12136 293 FSDPFIKLYLKPDLHKRKYKTGVKWKT-LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS--KG 369 (399)
Q Consensus 293 ~~dpyV~v~l~~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~~~d~~lG~~~i~l~~--~~ 369 (399)
..++|+.+.+.. ....+|....+. .+|.|.+.|..... .. ...+.++|-+.+..+.-..+|.+.+++.. .+
T Consensus 137 ~~e~Ylt~~l~~---~~~~~t~~~~~f~e~s~~~f~~~~~~~--h~-~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~ 210 (887)
T KOG1329|consen 137 TLENYLTVVLHK---ARYRRTHVIYEFLENSRWSFSFDIGFA--HK-AGYVIFRVKGARVPGWSKRWGRVKISFLQYCSG 210 (887)
T ss_pred hccchheeeech---hhhhchhhhhcccccchhhhhcccccc--cc-ccEEEEeecCCccccceeEEEEeccchhhhhcc
Confidence 378999999842 256677777766 78999998765553 22 46889999988877756789999999765 34
Q ss_pred CcchhhhhhhcCCC
Q psy12136 370 DRLRHWVDMMKYPD 383 (399)
Q Consensus 370 ~~~~~w~~l~~~p~ 383 (399)
.....|+.++..-+
T Consensus 211 ~~~~~~~~Il~~d~ 224 (887)
T KOG1329|consen 211 HRIGGWFPILDNDG 224 (887)
T ss_pred ccccceeeeeccCC
Confidence 66777877776654
No 299
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=53.11 E-value=56 Score=24.87 Aligned_cols=50 Identities=26% Similarity=0.264 Sum_probs=32.5
Q ss_pred CCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCC
Q psy12136 294 SDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 351 (399)
Q Consensus 294 ~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~ 351 (399)
.+..+.+.+.+ +....|.-... .+..|++.|.|.+.. .+.|.|.||-+|.
T Consensus 9 ~eV~avLklDn---~~VgqT~Wk~~-s~q~WDQ~Fti~LdR----sRELEI~VywrD~ 58 (98)
T cd08687 9 SEVSAVLKLDN---TVVGQTQWKPK-SNQAWDQSFTLELER----SRELEIAVYWRDW 58 (98)
T ss_pred cceEEEEEEcC---eEEeecccccc-ccccccceeEEEeec----ccEEEEEEEEecc
Confidence 45555565532 24445543322 467899999998853 4789999997764
No 300
>KOG0904|consensus
Probab=53.01 E-value=60 Score=34.87 Aligned_cols=75 Identities=13% Similarity=0.157 Sum_probs=48.2
Q ss_pred ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEe--cCCCC--ceEeecceeCCCCceecceEEEEeccCcccc-cEEEEEE
Q psy12136 272 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLK--PDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELSK-QTLVITV 346 (399)
Q Consensus 272 ~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~--~~~~~--~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~-~~l~i~V 346 (399)
...+.|.++.+.++.. ....|-+|.|..+ .+... ....|..+....+|.||+.+.|.|.-.++.. +.|.|.|
T Consensus 342 ~~~frI~l~~is~~n~---~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i 418 (1076)
T KOG0904|consen 342 DRPFRIKLVGISKVNL---PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAI 418 (1076)
T ss_pred CCceEEEEeeccccCC---CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeee
Confidence 4567888888876532 2234566666543 32222 3356666666789999999999987666553 4577777
Q ss_pred EeC
Q psy12136 347 WDK 349 (399)
Q Consensus 347 ~d~ 349 (399)
|-.
T Consensus 419 ~~v 421 (1076)
T KOG0904|consen 419 YAV 421 (1076)
T ss_pred eEe
Confidence 754
No 301
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=52.63 E-value=1.2e+02 Score=24.37 Aligned_cols=93 Identities=8% Similarity=0.053 Sum_probs=51.9
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcC
Q psy12136 130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 209 (399)
Q Consensus 130 ~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~ 209 (399)
..|.++=+....+|..+..+.+.||++|+-.. .....+........-.=...+.+ .+...-.-.--+.|.+|+.+
T Consensus 4 ~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~~----~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~GDV~i~~~~~~ 78 (134)
T PF10409_consen 4 RPLFLKSIILHGIPNFNSGGGCRPYIEIYNGG----KKVFSTSKSYEDPKSYEQDSVII-ELPKNLPLRGDVLIKFYHKR 78 (134)
T ss_dssp -EEEEEEEEEES-TTSTTSSCCTEEEEEEETT----EEEEETCCTCCCCCEEETTCEEE-EEEEEEEEESEEEEEEEECE
T ss_pred eeEEEEEEEEECCCccCCCCCEEEEEEEECCC----ccEEEeccceeccccccceeEEE-EeCCCCeEeCCEEEEEEeCC
Confidence 45666667777888776677899999999642 12222332222111111233333 22222111356788999877
Q ss_pred C--CCCcceeeEEecCcccC
Q psy12136 210 K--YGHDFLGEARFPLNRLR 227 (399)
Q Consensus 210 ~--~~~~~lG~~~i~l~~l~ 227 (399)
. ..++.+.++.+.-.-+.
T Consensus 79 ~~~~~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 79 SSSMSKEKMFRFWFNTGFIE 98 (134)
T ss_dssp TTECCCEEEEEEEEEGGGSB
T ss_pred CcccccCeEEEEEEeeeeee
Confidence 3 34477888888776665
No 302
>KOG0904|consensus
Probab=52.00 E-value=33 Score=36.77 Aligned_cols=76 Identities=16% Similarity=0.103 Sum_probs=47.7
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEE--ecCCCCCce-EecccccCCCCCeecceEEeceeCcccCC-CceEEEE
Q psy12136 129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNL--VPLTKTSHR-LRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHIL 204 (399)
Q Consensus 129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l--~~~~~~~~~-~rT~~~~~t~nP~wne~f~f~~v~~~~l~-~~~L~~~ 204 (399)
.+.++|+++.+.++... ...|-+|.|.. -.+.....+ ..|.-+..+.+|.||+...| +|.-.++. ...|.|.
T Consensus 342 ~~~frI~l~~is~~n~~---~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leF-DI~i~DLPr~ArLc~~ 417 (1076)
T KOG0904|consen 342 DRPFRIKLVGISKVNLP---ETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEF-DIYIKDLPRMARLCLA 417 (1076)
T ss_pred CCceEEEEeeccccCCC---cccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEe-eeecCCCChhhhheee
Confidence 45688888888765422 22355555554 333333344 45555666889999999999 56655554 3667788
Q ss_pred EEEc
Q psy12136 205 VLDD 208 (399)
Q Consensus 205 V~d~ 208 (399)
||..
T Consensus 418 i~~v 421 (1076)
T KOG0904|consen 418 IYAV 421 (1076)
T ss_pred eeEe
Confidence 7764
No 303
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=49.67 E-value=1.9e+02 Score=27.75 Aligned_cols=97 Identities=7% Similarity=0.107 Sum_probs=60.2
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCe--ecceEEeceeCcccCCCceEEEEEE
Q psy12136 129 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPE--FHEKLTFYSVSETDLSLQSLHILVL 206 (399)
Q Consensus 129 ~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~--wne~f~f~~v~~~~l~~~~L~~~V~ 206 (399)
.-.|.|.|.+.-++... ...|+.+..+ ....+|..+.-+..-. -.+.... .-... +.+|++.|+
T Consensus 57 kF~LLVeI~EI~~i~k~-----khiyIef~~G-----r~d~TT~~IpTsKK~RI~IqqRV~I---kIRQc-DnTLkI~lf 122 (508)
T PTZ00447 57 TFYLLVKINEIFNINKY-----KHIYIIFSTD-----KYDFTTDEIPTNKKNRIHIDQRVDI---KIRQC-DETLRVDLF 122 (508)
T ss_pred eeeEEEEehhhhccccc-----eeEEEEEEcC-----ceEEEccccccCcCceEEEeeeeee---eeeec-CceEEEEEE
Confidence 35677888877666443 3678888873 3556665543332222 2233322 22222 578999999
Q ss_pred EcCCCCCcceeeEEecCcc--cCCCcceeEEEeec
Q psy12136 207 DDDKYGHDFLGEARFPLNR--LRPHISRDLCLNLC 239 (399)
Q Consensus 207 d~~~~~~~~lG~~~i~l~~--l~~~~~~~~~~~L~ 239 (399)
-....+...||.+.+.+.. +...-+...|+.+.
T Consensus 123 KKkLvkk~hIgdI~InIn~dIIdk~FPKnkWy~c~ 157 (508)
T PTZ00447 123 TTKLTKKVHIGQIKIDINASVISKSFPKNEWFVCF 157 (508)
T ss_pred eccccceeEEEEEEecccHHHHhccCCccceEEEe
Confidence 9888777899999998876 23333556666664
No 304
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=47.61 E-value=1.6e+02 Score=24.30 Aligned_cols=73 Identities=16% Similarity=0.127 Sum_probs=51.0
Q ss_pred CCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcc---------cCCCceEEEEEEEcCCCCCcceeeEE
Q psy12136 150 TSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET---------DLSLQSLHILVLDDDKYGHDFLGEAR 220 (399)
Q Consensus 150 ~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~---------~l~~~~L~~~V~d~~~~~~~~lG~~~ 220 (399)
.-|.|..|+++ ++-++|+-....---.|+|.|.|..+-.. .|....+.|+++.+.....+.|+...
T Consensus 19 ~~~vyL~v~~l-----g~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~~g~iLA~ye 93 (140)
T PF14909_consen 19 KGDVYLSVCIL-----GQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPPAGEILAYYE 93 (140)
T ss_pred CCCEEEEEEEc-----ccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCCCCcEEEEEe
Confidence 45899999997 47888977766555567999988644332 23457889999887665446677666
Q ss_pred ecCcccC
Q psy12136 221 FPLNRLR 227 (399)
Q Consensus 221 i~l~~l~ 227 (399)
-.++++.
T Consensus 94 ~n~rDfL 100 (140)
T PF14909_consen 94 ENTRDFL 100 (140)
T ss_pred ccccceE
Confidence 6666553
No 305
>KOG0906|consensus
Probab=40.50 E-value=1.3e+02 Score=31.41 Aligned_cols=76 Identities=22% Similarity=0.199 Sum_probs=49.5
Q ss_pred CCCCcEEEEEEecCCC-CCceEecccccCCCCCeecceEEeceeCcccCC-CceEEEEEEEcCCCCC-cceeeEEecCcc
Q psy12136 149 GTSDPFCKLNLVPLTK-TSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILVLDDDKYGH-DFLGEARFPLNR 225 (399)
Q Consensus 149 ~~~dpyv~v~l~~~~~-~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~-~~~L~~~V~d~~~~~~-~~lG~~~i~l~~ 225 (399)
..+|.|+...+-+.+. -.-.-+|..+.....-.|||-..++ +...++. +..|.+++|+...... .++|..++.+..
T Consensus 45 ~~~~l~~~c~v~~~~~~~~lP~~ts~~~~~~~~~wnewLtlp-vky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 45 TSSDLYVTCQVFAEGKPFALPVRTSYKAFSKRINWNEWLTLP-VKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred cchhhhheeeeeccCCcccCCccccccccCCccchhhhhccc-cccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 3567787777654221 1223344443333323499988884 6655553 4789999999887777 999999888754
No 306
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=35.03 E-value=2.8e+02 Score=23.47 Aligned_cols=83 Identities=17% Similarity=0.208 Sum_probs=49.4
Q ss_pred EEEEecCCCCCCCCCCCCcEEEEEEecCCC-----CCc-eEeccccc-----CCCCCeecceEEeceeCcccCCCceEEE
Q psy12136 135 TLHRAKGLRAMDIHGTSDPFCKLNLVPLTK-----TSH-RLRTKTCL-----RTINPEFHEKLTFYSVSETDLSLQSLHI 203 (399)
Q Consensus 135 ~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~-----~~~-~~rT~~~~-----~t~nP~wne~f~f~~v~~~~l~~~~L~~ 203 (399)
.|..|.+.. ..+-||+-.+.-+.. ... ...|.+.+ +...-+||--|++.........-..|.|
T Consensus 7 ~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l 80 (168)
T PF07162_consen 7 EIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVL 80 (168)
T ss_pred EEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEE
Confidence 456666443 236688877642111 112 34444432 2345779988877433333333468999
Q ss_pred EEEEcCCCCC-cceeeEEecC
Q psy12136 204 LVLDDDKYGH-DFLGEARFPL 223 (399)
Q Consensus 204 ~V~d~~~~~~-~~lG~~~i~l 223 (399)
+||..|..++ .+.|-..+.|
T Consensus 81 ~V~~~D~~gr~~~~GYG~~~l 101 (168)
T PF07162_consen 81 QVYSLDSWGRDRVEGYGFCHL 101 (168)
T ss_pred EEEEEcccCCeEEeEEeEEEe
Confidence 9999999998 7776655544
No 307
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=33.73 E-value=3.4e+02 Score=26.06 Aligned_cols=99 Identities=14% Similarity=0.212 Sum_probs=66.1
Q ss_pred cceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCC-c-eecceEEEEeccCcccccEEEEEEEe
Q psy12136 271 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLN-P-IFNEEFAIETKITELSKQTLVITVWD 348 (399)
Q Consensus 271 ~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~n-P-~wne~f~f~v~~~~l~~~~l~i~V~d 348 (399)
....|.|.|.+..++.. ....|+.++.+ +...+|..+.-+.. - .-.+.....+. + ++..|.|.|+-
T Consensus 56 RkF~LLVeI~EI~~i~k-----~khiyIef~~G----r~d~TT~~IpTsKK~RI~IqqRV~IkIR--Q-cDnTLkI~lfK 123 (508)
T PTZ00447 56 RTFYLLVKINEIFNINK-----YKHIYIIFSTD----KYDFTTDEIPTNKKNRIHIDQRVDIKIR--Q-CDETLRVDLFT 123 (508)
T ss_pred ceeeEEEEehhhhcccc-----ceeEEEEEEcC----ceEEEccccccCcCceEEEeeeeeeeee--e-cCceEEEEEEe
Confidence 35678888888777643 35678888874 45566654443322 2 23455555564 2 35789999998
Q ss_pred CCCCCCCeeeEEEEEccCC----CCCcchhhhhhhcCC
Q psy12136 349 KDYGKSNDYLGCLELCCNS----KGDRLRHWVDMMKYP 382 (399)
Q Consensus 349 ~~~~~~d~~lG~~~i~l~~----~~~~~~~w~~l~~~p 382 (399)
.... +..-||.+.|++++ ..-....||-|...+
T Consensus 124 KkLv-kk~hIgdI~InIn~dIIdk~FPKnkWy~c~kDG 160 (508)
T PTZ00447 124 TKLT-KKVHIGQIKIDINASVISKSFPKNEWFVCFKDG 160 (508)
T ss_pred cccc-ceeEEEEEEecccHHHHhccCCccceEEEecCC
Confidence 7765 56789999999985 335677888886654
No 308
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=32.01 E-value=3.3e+02 Score=26.93 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=35.8
Q ss_pred ceEEEEEEEcCC-----C-CC-cceeeEEecCcccCCCc-----ceeEEEeecccCCCCCccccccccccccceeEEEEE
Q psy12136 199 QSLHILVLDDDK-----Y-GH-DFLGEARFPLNRLRPHI-----SRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTL 266 (399)
Q Consensus 199 ~~L~~~V~d~~~-----~-~~-~~lG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l 266 (399)
..|+|.||.-.. + .. .+||.+.++|.- .... -|..|+.+-+... ........+|++.+
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpldl-~~ae~kp~v~hnGWi~iGk~~~---------~~~~~~~aeLHl~V 164 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLDL-KWAEGKPVVFHNGWISIGKNKQ---------GSGKSPSAELHLVV 164 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEecc-ccccCCeeEEEccceecCCCCC---------CCCCCCcceEEEEE
Confidence 469999998432 1 34 899999999873 2221 1233544432110 00012456788887
Q ss_pred eeecc
Q psy12136 267 CFSTK 271 (399)
Q Consensus 267 ~~~~~ 271 (399)
..+|.
T Consensus 165 r~EpD 169 (460)
T PF06219_consen 165 RAEPD 169 (460)
T ss_pred eccCC
Confidence 76664
No 309
>KOG0241|consensus
Probab=31.06 E-value=73 Score=34.66 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=63.7
Q ss_pred cceeeEEecCcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeecc----------------------
Q psy12136 214 DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTK---------------------- 271 (399)
Q Consensus 214 ~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~~---------------------- 271 (399)
.+||-+.+-|..|...-...|..++- ..++...|+|+|.+.-...
T Consensus 771 nLiGVANvFLE~LF~DvkL~Y~vPII-------------sQqGEVAGRLhVev~Rv~gq~~~~~~ggdev~e~~~~~~~~ 837 (1714)
T KOG0241|consen 771 NLIGVANVFLEVLFHDVKLQYAVPII-------------SQQGEVAGRLHVEVMRVTGQVPERVVGGDEVVESSGEIIHR 837 (1714)
T ss_pred cchhhHHHHHHHHHhhheecccccee-------------cccccccceeEEEEEEeccccchhhccccccccCCCccccc
Confidence 67887777766655433333333332 1234677888887654321
Q ss_pred --ceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeC---CCC----ceecceEEEEecc-----Ccc
Q psy12136 272 --KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWK---TLN----PIFNEEFAIETKI-----TEL 337 (399)
Q Consensus 272 --~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~---t~n----P~wne~f~f~v~~-----~~l 337 (399)
.-.-.|+|.+|.+||..-.+ =.|++..+.+... ...--.++.. ..+ -.|..+-.|.|.. +-+
T Consensus 838 ~~~ltCrVkIk~AtGLP~~LSn---FVFCqYtFw~~~E-~~vvaP~vd~ss~~~~~~~~v~FeH~~df~V~vtEeFlE~~ 913 (1714)
T KOG0241|consen 838 VKKLTCRVKIKEATGLPLNLSN---FVFCQYTFWDQQE-STVVAPVVDPSSQSKDAQYTVIFEHCKDFVVNVTEEFLEHI 913 (1714)
T ss_pred cceEEEEEEEeeccCCcccccc---eEEEEeeeccccc-ceeeeeccccccccCCCCeEEEeecccceEEeehHHHHHHh
Confidence 22345889999999753221 1355555543211 1111222211 111 1344333444432 123
Q ss_pred cccEEEEEEEeCCCCCCCe
Q psy12136 338 SKQTLVITVWDKDYGKSND 356 (399)
Q Consensus 338 ~~~~l~i~V~d~~~~~~d~ 356 (399)
.+..|-|+||-+...+...
T Consensus 914 ~dgALaIEVwGHr~~g~~~ 932 (1714)
T KOG0241|consen 914 SDGALAIEVWGHRIAGNGS 932 (1714)
T ss_pred hcCceEEEEeeccccCCCc
Confidence 3577999999887655433
No 310
>PF08151 FerI: FerI (NUC094) domain; InterPro: IPR012968 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This domain is present in proteins of the Ferlin family, which includes Otoferlin, Myoferlin and Dysferlin. It is often located between two C2 domains [].
Probab=30.47 E-value=66 Score=23.22 Aligned_cols=42 Identities=7% Similarity=0.052 Sum_probs=22.8
Q ss_pred CcccCCCcceeEEEeecccCCCCCccccccccccccceeEEEEEeeecc
Q psy12136 223 LNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTK 271 (399)
Q Consensus 223 l~~l~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~G~l~l~l~~~~~ 271 (399)
+..+..++.|.+ +++|..+... .+...+.+|.|+++++....
T Consensus 3 lgtVY~qP~H~~---~~KW~~L~dP----~D~~~G~kGYlKv~i~Vlg~ 44 (72)
T PF08151_consen 3 LGTVYNQPDHQF---YRKWALLTDP----DDTSAGVKGYLKVDISVLGP 44 (72)
T ss_pred eeeeecCCCCee---EeceEEecCC----CCCccCCceEEEEEEEEEcC
Confidence 444555555543 3334333322 22235789999998876554
No 311
>KOG0694|consensus
Probab=29.54 E-value=22 Score=36.94 Aligned_cols=53 Identities=21% Similarity=0.169 Sum_probs=37.8
Q ss_pred CCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCcccccEEEEEEEeCCCC
Q psy12136 293 FSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 352 (399)
Q Consensus 293 ~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~~~~ 352 (399)
..+||+.|.+... ....+.+.+.+..|.|+++|...+.. ...+.|.|+.....
T Consensus 27 al~~y~~v~vk~~---~~~~~~~~~~~~~~~~~~~F~~~v~~----~~~~~i~v~~~~~~ 79 (694)
T KOG0694|consen 27 ALQPYLAVELKVK---QGAENMTKVELRIPELRETFHVEVVA----GGAKNIIVLLKSPD 79 (694)
T ss_pred hhhhhheecccee---ecccccCCCCCCCchhhhheeeeeec----CCceEEEEEecCCc
Confidence 4688988887421 22344447788999999999988753 36788888886533
No 312
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=27.45 E-value=74 Score=31.28 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=20.8
Q ss_pred ceeeEEecCcc-cCCCcceeEEEeecc
Q psy12136 215 FLGEARFPLNR-LRPHISRDLCLNLCK 240 (399)
Q Consensus 215 ~lG~~~i~l~~-l~~~~~~~~~~~L~~ 240 (399)
++|.+.|++.. +..+..++.|+++..
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~ 27 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFD 27 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeecccc
Confidence 48999999999 666677788887754
No 313
>KOG1032|consensus
Probab=26.60 E-value=2.1e+02 Score=29.88 Aligned_cols=80 Identities=16% Similarity=0.100 Sum_probs=52.1
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEecCCCCCceEecccccCCCCCeecceEEeceeCcccCCCceEEEEEEEcCCC
Q psy12136 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 211 (399)
Q Consensus 132 L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~rT~~~~~t~nP~wne~f~f~~v~~~~l~~~~L~~~V~d~~~~ 211 (399)
..+..+.+.++.....++.++||+-+... .+.+...+...+.+|.|++.++|+ ...++-.+..+.+++....
T Consensus 99 ~~~~~~~~~~~a~~~~n~~~~~~~l~~~~-----~cal~reillQGrmyis~~~icF~---s~i~gw~~~~vIpf~eI~~ 170 (590)
T KOG1032|consen 99 GSSALLAGVNLASEFLNGVPDPEILLTDY-----SCALQREILLQGRMYISEEHICFN---SNIFGWETKVVIPFDEITL 170 (590)
T ss_pred chhhhhcchhhhhhhhhcCCCcceeeeec-----chhhccccccccccccccceeeec---ccccCccceeEEeeeeeee
Confidence 33444455666666666688999988873 456666678889999999999995 3444445555666665543
Q ss_pred -CC-cceeeE
Q psy12136 212 -GH-DFLGEA 219 (399)
Q Consensus 212 -~~-~~lG~~ 219 (399)
.+ ...|.+
T Consensus 171 ikk~~tag~f 180 (590)
T KOG1032|consen 171 IKKTKTAGIF 180 (590)
T ss_pred eehhhhccCC
Confidence 33 444443
No 314
>PF15532 Toxin_53: Putative toxin 53
Probab=26.02 E-value=3.1e+02 Score=21.19 Aligned_cols=67 Identities=7% Similarity=0.055 Sum_probs=43.7
Q ss_pred EEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEecCC----CCCceEecccccCCCCCeecceE
Q psy12136 119 IELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLT----KTSHRLRTKTCLRTINPEFHEKL 186 (399)
Q Consensus 119 i~~~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyv~v~l~~~~----~~~~~~rT~~~~~t~nP~wne~f 186 (399)
.-|...+.......+|+|+.+.--++...+...-+-++|....+. .......+.+.+ ..||.||+.-
T Consensus 23 ~~~k~kW~~~g~tyrvRvH~~Dp~ap~Gsnaa~G~IyRI~qg~G~~y~d~~g~~~h~s~l~-~~sP~yn~~a 93 (102)
T PF15532_consen 23 EGFKFKWTDGGKTYRVRVHPADPTAPAGSNAANGWIYRISQGSGWEYMDPDGKWHHESVLK-PNSPNYNEDA 93 (102)
T ss_pred ccceEEeecCCceEEEEecCCCCCCCCCCcccCCCEEEEEeccCceEecCCCCeeeccccc-cCCCCcChhh
Confidence 445556656677889999998765666666667788888832211 123455565654 8899999853
No 315
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=25.69 E-value=3.8e+02 Score=22.11 Aligned_cols=71 Identities=15% Similarity=0.164 Sum_probs=51.8
Q ss_pred CCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEecc----------CcccccEEEEEEEeCCCCCCCeeeEEE
Q psy12136 292 GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI----------TELSKQTLVITVWDKDYGKSNDYLGCL 361 (399)
Q Consensus 292 g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~----------~~l~~~~l~i~V~d~~~~~~d~~lG~~ 361 (399)
...|.|..|++.+ ..++|+-.....--.|+|.|.|.-.. ..|....+.|+++.+.... ...|+..
T Consensus 18 ~~~~vyL~v~~lg----~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~~-g~iLA~y 92 (140)
T PF14909_consen 18 DKGDVYLSVCILG----QYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPPA-GEILAYY 92 (140)
T ss_pred CCCCEEEEEEEcc----cEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCCC-CcEEEEE
Confidence 3468999999986 66788877766666789999998221 2344578999999987654 5678887
Q ss_pred EEccCC
Q psy12136 362 ELCCNS 367 (399)
Q Consensus 362 ~i~l~~ 367 (399)
.-..++
T Consensus 93 e~n~rD 98 (140)
T PF14909_consen 93 EENTRD 98 (140)
T ss_pred eccccc
Confidence 766654
No 316
>KOG3543|consensus
Probab=20.12 E-value=3.6e+02 Score=28.07 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=66.5
Q ss_pred ceeEEEEEeeeccceeEEEEEEeeecCCCCCCCCCCCcEEEEEEecCCCCceEeecceeCCCCceecceEEEEeccCccc
Q psy12136 259 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELS 338 (399)
Q Consensus 259 ~G~l~l~l~~~~~~~~L~v~v~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~ 338 (399)
-|++.++-.-..-.-.+.|.|++..+|....++ -=.|+...+-+ .+..|..... .-|.|.-.=.|.-..+
T Consensus 327 d~d~~ltksdv~la~smevvvmevqglksvapn--rivyctmeveg----eklqtdqaea-skp~wgtqgdfstthp--- 396 (1218)
T KOG3543|consen 327 DGDVTLTKSDVSLALSMEVVVMEVQGLKSVAPN--RIVYCTMEVEG----EKLQTDQAEA-SKPKWGTQGDFSTTHP--- 396 (1218)
T ss_pred cccceeeccceeEEeeeeEEEeeeccccccCCC--eeEEEEEEecc----cccccchhhh-cCCCCCcCCCcccCCC---
Confidence 444444433333345678999999999765443 23577776632 5566654433 3599987655654321
Q ss_pred ccEEEEEEEeCCC---CCCCeeeEEEEEccCCCCCcchhhhhhh
Q psy12136 339 KQTLVITVWDKDY---GKSNDYLGCLELCCNSKGDRLRHWVDMM 379 (399)
Q Consensus 339 ~~~l~i~V~d~~~---~~~d~~lG~~~i~l~~~~~~~~~w~~l~ 379 (399)
-..+++.+|.... .-.|.-||++.|.-.........|+.|.
T Consensus 397 lpvvkvklftestgvlaledkelgrvil~ptpns~ks~ewh~mt 440 (1218)
T KOG3543|consen 397 LPVVKVKLFTESTGVLALEDKELGRVILQPTPNSAKSPEWHTMT 440 (1218)
T ss_pred CceeEEEEEeecceeEEeechhhCeEEEecCCCCcCCccceeee
Confidence 1356777776542 1246679999998665555555666654
Done!