RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12136
(399 letters)
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 258 bits (662), Expect = 1e-84
Identities = 91/283 (32%), Positives = 147/283 (51%), Gaps = 15/283 (5%)
Query: 112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRT 171
LG ++ ++ YD L V + +A L A+D+ GTSDP+ K+ L+P K + T
Sbjct: 1 GSEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKK--KKFET 58
Query: 172 KTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHI 230
K +T+NP F+E+ TF V ++L+ ++L + V D D++ HD +GE + P+N +
Sbjct: 59 KVHRKTLNPVFNEQFTF-KVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH 117
Query: 231 SRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDS 290
+ +L + +EE + G I +L + L V +++ NL MD
Sbjct: 118 VTEEWRDL----------QSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDV 167
Query: 291 NGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDK 349
G SDP++K++L + + +K KT +K TLNP +NE F+ E ++ K +V+TV D
Sbjct: 168 GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY 227
Query: 350 DYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 392
D ND +G + + NS G LRHW DM+ P H L
Sbjct: 228 DKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTL 270
Score = 98.7 bits (246), Expect = 1e-23
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 2/132 (1%)
Query: 94 TLKRGVITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDP 153
+ LG I ++ Y T L V + AK L+ MD+ G SDP
Sbjct: 114 DFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDP 173
Query: 154 FCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG- 212
+ K++L+ K + +T T+NP ++E +F V + + + VLD DK G
Sbjct: 174 YVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF-EVPFEQIQKVQVVVTVLDYDKIGK 232
Query: 213 HDFLGEARFPLN 224
+D +G+ N
Sbjct: 233 NDAIGKVFVGYN 244
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 248 bits (636), Expect = 9e-81
Identities = 81/285 (28%), Positives = 126/285 (44%), Gaps = 15/285 (5%)
Query: 111 QADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLR 170
+A G I + Y + L V + +A L A D +G SDP+ K+ L+P K + +
Sbjct: 1 EAGAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRK--KKFQ 58
Query: 171 TKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPH 229
TK +T+NP F+E F SV +L+ + LH V D D++ HD +G+
Sbjct: 59 TKVHRKTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNL----L 113
Query: 230 ISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMD 289
+ + + G E G++ +LC+ L V +IK +NL MD
Sbjct: 114 ELAEQPPDRPLWRDIL-----EGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMD 168
Query: 290 SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD 348
GFSDP++K L + + +K KT +K TLNP +NE + + L I V D
Sbjct: 169 LTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVD 228
Query: 349 KDYGKSNDYLGCLELCCNSKGDR-LRHWVDMMKYPDHKHEGIHNL 392
D N+ +G + + HW +M+ P E H L
Sbjct: 229 YDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQL 273
Score = 127 bits (321), Expect = 3e-34
Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 319
G+I L + L+V +++ +L DSNGFSDP++K+YL PD K+K++T V KT
Sbjct: 7 GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPD-RKKKFQTKVHRKT 65
Query: 320 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMM 379
LNPIFNE F + EL+++ L +V+D D +D +G + L + +
Sbjct: 66 LNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLW 125
Query: 380 KY-----PDHKHEGIHNLSIK 395
+ + G N S+
Sbjct: 126 RDILEGGSEKADLGELNFSLC 146
Score = 100 bits (251), Expect = 2e-24
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 2/131 (1%)
Query: 100 ITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNL 159
++ +LG + ++ Y T L VT+ +A L+AMD+ G SDP+ K +L
Sbjct: 122 RPLWRDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASL 181
Query: 160 VPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGE 218
+ + + +T T+NP ++E L F V+ + L I V+D D GH + +G
Sbjct: 182 ISEGRRLKKRKTSIKKNTLNPTYNEALVF-DVAPESVENVGLSIAVVDYDCIGHNEVIGV 240
Query: 219 ARFPLNRLRPH 229
R PH
Sbjct: 241 CRVGPEAADPH 251
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 165 bits (419), Expect = 6e-50
Identities = 73/148 (49%), Positives = 106/148 (71%), Gaps = 1/148 (0%)
Query: 246 REEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD 305
EE+V + + GKI ++L +ST++ LIV +I+C +L MD+NG+SDPF+KL+LKPD
Sbjct: 10 EEEQVERIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPD 69
Query: 306 LHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELC 364
+ K K+KT +K KTLNP FNEEF + K ++L+K++L I+VWD D GKSNDY+G +L
Sbjct: 70 MGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLG 129
Query: 365 CNSKGDRLRHWVDMMKYPDHKHEGIHNL 392
++KG+RL+HW + +K D K E H L
Sbjct: 130 ISAKGERLKHWYECLKNKDKKIERWHQL 157
Score = 107 bits (269), Expect = 4e-28
Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
G I +++ Y + L V + R L AMD +G SDPF KL L P + +T+
Sbjct: 23 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK 82
Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLN 224
+T+NPEF+E+ + + +DL+ +SL I V D D +D++G + ++
Sbjct: 83 KTLNPEFNEEFFY-DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGIS 131
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 161 bits (409), Expect = 8e-49
Identities = 52/134 (38%), Positives = 76/134 (56%), Gaps = 1/134 (0%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 318
G++ L+LC++ ++IVN+IK NL MD G SDP++K++L + K KT K +
Sbjct: 3 GELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKR 62
Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 378
LNPIFNE FA + +L + T++ITV DKD ND +G + L S ++HW DM
Sbjct: 63 NLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDM 122
Query: 379 MKYPDHKHEGIHNL 392
+ P H L
Sbjct: 123 IARPRQPVAQWHQL 136
Score = 108 bits (271), Expect = 1e-28
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC 174
+ G + L++ Y+ + S+ V + +A+ L+AMDI GTSDP+ K+ L+ K + +T T
Sbjct: 1 SRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTK 60
Query: 175 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLN 224
R +NP F+E F + L ++ I V+D DK D +G+
Sbjct: 61 KRNLNPIFNESFAF-DIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWK 110
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 161 bits (409), Expect = 1e-48
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 258 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVK 316
G++ ++LC+ + L V ++K +L D +G SDP++K+ L + K KT VK
Sbjct: 15 GRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVK 74
Query: 317 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWV 376
T N +FNE F + L + ++ V D + G N+ +G L L ++G HW
Sbjct: 75 KCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWK 134
Query: 377 DMMKYPDHKHEGIHNLS 393
++ +P + H L
Sbjct: 135 EICDFPRRQIAKWHMLC 151
Score = 105 bits (264), Expect = 2e-27
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
G + +++ Y STT +L V + +A+ L D+ G SDP+ K+NL K + +T
Sbjct: 16 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKK 75
Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLN 224
T N F+E F + L S+ LVLD ++ + +G
Sbjct: 76 CTPNAVFNELFVF-DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT 124
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 158 bits (401), Expect = 2e-47
Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 318
G I +L + L V +++ NL MD G SDP++K++L + + +K KT +K
Sbjct: 12 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 71
Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 378
TLNP +NE F+ E ++ K +V+TV D D ND +G + + NS G LRHW DM
Sbjct: 72 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 131
Query: 379 MKYPDHKHEGIHNL 392
+ P H L
Sbjct: 132 LANPRRPIAQWHTL 145
Score = 104 bits (261), Expect = 5e-27
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Query: 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
LG I ++ Y T L V + AK L+ MD+ G SDP+ K++L+ K + +T
Sbjct: 11 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK 70
Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLN 224
T+NP ++E +F V + + + VLD DK G +D +G+ N
Sbjct: 71 NTLNPYYNESFSF-EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN 119
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle,
glycoprotein, lipoprotein, membrane, metal- binding,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Length = 143
Score = 144 bits (366), Expect = 2e-42
Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 3/137 (2%)
Query: 244 VPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLK 303
+ + + GK+ +L + + L+V +I+ L +D G SDP++K++L
Sbjct: 5 IGGGGGGILDSMVEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLL 64
Query: 304 PDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CL 361
PD K+K++T V KTLNP+FNE+F + +EL +TLV+ V+D D +D +G +
Sbjct: 65 PD-KKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKV 123
Query: 362 ELCCNSKGDRLRHWVDM 378
+ G W D+
Sbjct: 124 PMNTVDFGHVTEEWRDL 140
Score = 117 bits (295), Expect = 5e-32
Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 108 VTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSH 167
+ LG ++ ++ YD L V + +A L A+D+ GTSDP+ K+ L+P
Sbjct: 12 ILDSMVEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLP--DKKK 69
Query: 168 RLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 226
+ TK +T+NP F+E+ TF V ++L ++L + V D D++ HD +GE + P+N +
Sbjct: 70 KFETKVHRKTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 143 bits (363), Expect = 6e-42
Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 244 VPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLK 303
+ E +E + GK+ +L + + L+V +I+ L +D G SDP++K++L
Sbjct: 13 LDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLL 72
Query: 304 PDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CL 361
PD K+K++T V KTLNP+FNE+F + +EL +TLV+ V+D D +D +G +
Sbjct: 73 PD-KKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKV 131
Query: 362 ELCCNSKGDRLRHWVDMM 379
+ G W D+
Sbjct: 132 PMNTVDFGHVTEEWRDLQ 149
Score = 117 bits (295), Expect = 5e-32
Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 4/136 (2%)
Query: 92 SGTLKRGVITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTS 151
+ G I + + + LG ++ ++ YD L V + +A L A+D+ GTS
Sbjct: 4 GISGGGGGILDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTS 63
Query: 152 DPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 211
DP+ K+ L+P + TK +T+NP F+E+ TF V ++L ++L + V D D++
Sbjct: 64 DPYVKVFLLP--DKKKKFETKVHRKTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRF 120
Query: 212 G-HDFLGEARFPLNRL 226
HD +GE + P+N +
Sbjct: 121 SKHDIIGEFKVPMNTV 136
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 139 bits (353), Expect = 2e-40
Identities = 51/132 (38%), Positives = 86/132 (65%), Gaps = 1/132 (0%)
Query: 110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 169
S T LG++E ++ YD +L T+ RAKGL+ MD +G +DP+ KL+L+P S++L
Sbjct: 9 SDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKL 68
Query: 170 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 228
RTKT T NP ++E L ++ ++E D+ ++L I V D+DK+G ++F+GE RF L +L+
Sbjct: 69 RTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKA 128
Query: 229 HISRDLCLNLCK 240
+ ++ + L +
Sbjct: 129 NQRKNFNICLER 140
Score = 126 bits (319), Expect = 1e-35
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 2/134 (1%)
Query: 247 EEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL 306
E + ++ G + +L + L +I+ L PMDSNG +DP++KL+L P
Sbjct: 3 EANSYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGA 62
Query: 307 HK-RKYKTGVKWKTLNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLGCLELC 364
K K +T T NP++NE ++ ++TL I+V D+D N+++G
Sbjct: 63 SKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFS 122
Query: 365 CNSKGDRLRHWVDM 378
R ++
Sbjct: 123 LKKLKANQRKNFNI 136
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 135 bits (342), Expect = 7e-39
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 5/132 (3%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWK 318
G+I++ + LIV + NL+PMD NG SDP++KL L PD K KT
Sbjct: 20 GRIYIQAHI--DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC 77
Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS-KGDRLRHWVD 377
+LNP +NE F + K ++ + L + +WD D ND++G L + + + W
Sbjct: 78 SLNPEWNETFRFQLKESDKDR-RLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFK 136
Query: 378 MMKYPDHKHEGI 389
++ + ++ +
Sbjct: 137 LLSQEEGEYFNV 148
Score = 110 bits (278), Expect = 2e-29
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC 174
G I + D L V + AK L MD +G SDP+ KL L+P K+ + +TKT
Sbjct: 18 RRGRIYIQAHIDREV--LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTI 75
Query: 175 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 228
++NPE++E F + E+D + L + + D D +DF+G F ++ L+
Sbjct: 76 KCSLNPEWNETFRF-QLKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQK 128
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 134 bits (340), Expect = 2e-38
Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKR-KYKTGVKW 317
G+I +L + + ++L+V++ +C L D + S+P++K YL PD ++ K KT +K
Sbjct: 10 GRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR 69
Query: 318 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHW 375
T+NP+++E E + L+++TL +VW N +LG E+ +S +L H
Sbjct: 70 DTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHC 129
Query: 376 VDMMKYPDHKHEGIH 390
+ + + EG H
Sbjct: 130 LPLHGKISAESEGHH 144
Score = 115 bits (291), Expect = 2e-31
Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 8/146 (5%)
Query: 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDI-HGTSDPFCKLNLVPLTKTSHRLRTKTC 174
G I ++ Y+ T SL V + L D S+P+ K L+P + +T
Sbjct: 9 TGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIK 68
Query: 175 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRD 233
T+NP + E L + + E+ L+ ++L V ++G + FLGEA ++ + D
Sbjct: 69 RDTVNPLYDETLRY-EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLD 127
Query: 234 LCLNLCKHYPVPREEEVWGEEECWQH 259
CL L E G H
Sbjct: 128 HCLPLHGKISAESE----GHHH-HHH 148
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 131 bits (332), Expect = 2e-37
Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 6/129 (4%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGF-SDPFIKLYLKPDLHKRKYKTGVKWK 318
G +F +L ++ +++A +VN+ + L MD SDP+IK+ + P+ K K KT V K
Sbjct: 9 GTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE-KKHKVKTRVLRK 67
Query: 319 TLNPIFNEEFAIETK-ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS---KGDRLRH 374
TL+P F+E F T++ + L T+ D +D +G + + + ++
Sbjct: 68 TLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLM 127
Query: 375 WVDMMKYPD 383
+++ P
Sbjct: 128 NREIISGPS 136
Score = 122 bits (309), Expect = 4e-34
Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 4/119 (3%)
Query: 110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHG-TSDPFCKLNLVPLTKTSHR 168
S + LG++ ++ Y+ + V + A+GL AMD TSDP+ K+ ++P + H+
Sbjct: 2 SSGSSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILP--EKKHK 59
Query: 169 LRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 226
++T+ +T++P F E TFY + T + +LH +L D++ D +GE PL+ +
Sbjct: 60 VKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 131 bits (331), Expect = 2e-37
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWK 318
G+I LT+ S+++ LIV + C NLI +G SDP++++YL PD + + KT V K
Sbjct: 11 GQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKK 69
Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKD--YGKSNDYLGC--LELCCNSKGDRLRH 374
TLNP+F++ F + E+ ++TL + V + K LG + L
Sbjct: 70 TLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQ 129
Query: 375 WVDMMKYPDHK 385
W D+ +
Sbjct: 130 WYDLTEDSGPS 140
Score = 110 bits (276), Expect = 2e-29
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 169
+ + LG I+LT+ + S L V +H + L A G SDP+ ++ L+P + S R
Sbjct: 4 GSSGSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRR 62
Query: 170 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG---HDFLGEARFPLNRL 226
+T +T+NP F + F SVS ++ ++L + V + + LG+ L
Sbjct: 63 KTHVSKKTLNPVFDQSFDF-SVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASE 121
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 129 bits (327), Expect = 7e-37
Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWK 318
G+I+L + +K L V + NLIPMD NG SDP++KL L PD K KT
Sbjct: 5 GRIYLKAEVTDEK--LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRS 62
Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS-KGDRLRHWVD 377
TLNP +NE F + K + L + +WD D ND++G L + W
Sbjct: 63 TLNPQWNESFTFKLK-PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYK 121
Query: 378 MMKYPDHKHEGIHNLSI 394
++ + + +N+ I
Sbjct: 122 LL---NQEEGEYYNVPI 135
Score = 105 bits (264), Expect = 1e-27
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 5/115 (4%)
Query: 115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC 174
G I L + T LHVT+ AK L MD +G SDP+ KL L+P K + +TKT
Sbjct: 3 KRGRIYLK--AEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTI 60
Query: 175 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 228
T+NP+++E TF + +D + L + + D D+ +DF+G F ++ L
Sbjct: 61 RSTLNPQWNESFTF-KLKPSDKD-RRLSVEIWDWDRTTRNDFMGSLSFGVSELMK 113
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting
molecule, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 141
Score = 129 bits (327), Expect = 1e-36
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 5/134 (3%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWK 318
G++ + L F LIV ++ +L + +P++K+Y PD K K +T K
Sbjct: 8 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 67
Query: 319 TLNPIFNEEFAIET-KITELSKQTLVITVWDKD--YGKSNDYLGCLELCCNS-KGDRLRH 374
TL P +N+ F E ++ L IT+WD+ + +++LG + + + D H
Sbjct: 68 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 127
Query: 375 WVDMMKYPDHKHEG 388
W + + G
Sbjct: 128 WYKLQTHDSGPSSG 141
Score = 124 bits (314), Expect = 6e-35
Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRT 171
+ ++ G + + + +D L VT+ AK L + + +P+ K+ +P ++ RT
Sbjct: 3 SGSSGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRT 62
Query: 172 KTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH---DFLGEARFPLNRL 226
KT +T+ P++++ + V + + L I + D + +FLGE L
Sbjct: 63 KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 120
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 129 bits (325), Expect = 2e-36
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 15/129 (11%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD----------LHKR 309
G+I L + + LI+++++ NL+P D+NG+SDPF+K+YL P +
Sbjct: 7 GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 310 KYKTGVKWKTLNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLG--CLELCCN 366
K +T K+LNP +N+ ++ + +L K+TL +TVWD D SND+LG ++L
Sbjct: 65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124
Query: 367 SKGDRLRHW 375
S D W
Sbjct: 125 SHLDNTPRW 133
Score = 114 bits (286), Expect = 8e-31
Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 12/122 (9%)
Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP---------LTKTSH 167
G I+L + YD L + + +A+ L D +G SDPF K+ L+P +
Sbjct: 7 GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 168 RLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 226
+ RTK +++NPE+++ + + S+S L ++L + V D D++ +DFLGE L+
Sbjct: 65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124
Query: 227 RP 228
Sbjct: 125 SH 126
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 128 bits (324), Expect = 2e-36
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 319
G+I ++ ++ ++ L V ++K L D +G SDPF+K+YL PD K K +T VK K
Sbjct: 13 GRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPD-KKHKLETKVKRKN 71
Query: 320 LNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWV 376
LNP +NE F E ++ ++ L + V D D ND +G + L W
Sbjct: 72 LNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWK 131
Query: 377 DM 378
D+
Sbjct: 132 DL 133
Score = 125 bits (316), Expect = 4e-35
Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Query: 109 TSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHR 168
+S + NLG I+ +V Y+ +L V + +A+ L A D GTSDPF K+ L+P H+
Sbjct: 5 SSGSRENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLP--DKKHK 62
Query: 169 LRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLR 227
L TK + +NP ++E F + + L++ VLD D++ +D +GE PLN++
Sbjct: 63 LETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVD 122
Query: 228 PHISRDLCLNLCKHYP 243
+ +L P
Sbjct: 123 LTQMQTFWKDLKPSGP 138
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 128 bits (323), Expect = 3e-36
Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 5/121 (4%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 319
K+ L + +K L V ++ + +G D +++ + + +T +K +
Sbjct: 13 PKLHYCLDYDCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQ 69
Query: 320 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVD 377
L+ + E + EL TL +T+ D + G L L S W +
Sbjct: 70 LHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGE 129
Query: 378 M 378
+
Sbjct: 130 L 130
Score = 110 bits (277), Expect = 1e-29
Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 6/118 (5%)
Query: 110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 169
S + + + YD L VT A + G D + + ++ T +
Sbjct: 6 SGSWNQAPKLHYCLDYDCQKAELFVTRLEA---VTSNHDGGCDCYVQGSVANRTGSVEA- 61
Query: 170 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 226
+T R ++ + E L ++E +L +L + + D++ H GE R L+
Sbjct: 62 QTALKKRQLHTTWEEGLVL-PLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGT 118
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 126 bits (319), Expect = 2e-35
Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 5/133 (3%)
Query: 252 GEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-- 309
E E +I + L + K + + +I+ +NL + I++ + P
Sbjct: 22 DESEAVGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTC 81
Query: 310 KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELC---CN 366
++T + +FNE F + L ++TL + V D + LG ++
Sbjct: 82 LFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVC 141
Query: 367 SKGDRLRHWVDMM 379
G+R W +++
Sbjct: 142 RSGERSTRWYNLL 154
Score = 122 bits (307), Expect = 9e-34
Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 3/134 (2%)
Query: 95 LKRGVITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPF 154
++R +E + I++ + YD + + + L A+
Sbjct: 8 VQRLGASEAAAFDSDESEAVGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVN 67
Query: 155 CKLNLVPL-TKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG- 212
++ ++P T+ RT+ + F+E S+S L ++L + V D+
Sbjct: 68 IRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV-SMSYPALHQKTLRVDVCTTDRSHL 126
Query: 213 HDFLGEARFPLNRL 226
+ LG A+ L +
Sbjct: 127 EECLGGAQISLAEV 140
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain,
neurotransmitter release, transport protein; 1.41A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 129
Score = 124 bits (314), Expect = 5e-35
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
G + + + +D L VT+ AK L + + +P+ K+ +P ++ RTKT +
Sbjct: 5 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 64
Query: 177 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH---DFLGEARFPLNRL 226
T+ P++++ + V + + L I + D + +FLGE L
Sbjct: 65 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 117
Score = 123 bits (311), Expect = 2e-34
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVKWK 318
G++ + L F LIV ++ +L + +P++K+Y PD K K +T K
Sbjct: 5 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 64
Query: 319 TLNPIFNEEFAIET-KITELSKQTLVITVWDKD--YGKSNDYLGCLELC-CNSKGDRLRH 374
TL P +N+ F E ++ L IT+WD+ + +++LG + + + D H
Sbjct: 65 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 124
Query: 375 WVDM 378
W +
Sbjct: 125 WYKL 128
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 122 bits (307), Expect = 7e-34
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPM-------DSNGFSDPFIKLYLKPDLHKRKYK 312
G + + + L V +I+ +L P S+P++K+ L PD K +
Sbjct: 13 GMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPD-QKNSKQ 71
Query: 313 TGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGD 370
TGVK KT P+F E + E E ++TL++TV D D + +G + LC
Sbjct: 72 TGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVK 131
Query: 371 RLRHWVDM 378
W +
Sbjct: 132 GGHWWKAL 139
Score = 109 bits (273), Expect = 7e-29
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 11/126 (8%)
Query: 109 TSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAM-------DIHGTSDPFCKLNLVP 161
+S + LG + + YD L V + A+ L S+P+ K+ L+P
Sbjct: 5 SSGSKYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLP 64
Query: 162 LTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEAR 220
+ +T +T P F E+ TF + + ++L + V+D DK+ H +G+
Sbjct: 65 --DQKNSKQTGVKRKTQKPVFEERYTF-EIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVS 121
Query: 221 FPLNRL 226
PL +
Sbjct: 122 VPLCEV 127
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 118 bits (297), Expect = 3e-32
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 15/137 (10%)
Query: 258 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVK 316
G L L + R L++++I+ LI G DP++K+ L P+ + KT
Sbjct: 12 VQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTV 70
Query: 317 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKD-YGKSNDYLGCLELCCNSKGDRLRHW 375
+P F+E F + + K L++TVW++ + + +GC+ ++
Sbjct: 71 PDCRDPAFHEHFFFPVQEEDDQK-RLLVTVWNRASQSRQSGLIGCMSF-------GVKSL 122
Query: 376 VDMMKYPDHKHEGIHNL 392
+ PD + G + L
Sbjct: 123 LT----PDKEISGWYYL 135
Score = 105 bits (263), Expect = 2e-27
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 112 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRT 171
+ G+ +L ++ D+ L + + KGL + GT DP+ K++L+P +T
Sbjct: 9 SHKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKT 67
Query: 172 KTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG--HDFLGEARFPLNRL 226
+T +P FHE F V E D + L + V + +G F + L
Sbjct: 68 QTVPDCRDPAFHEHFFF-PVQEEDDQ-KRLLVTVWNRASQSRQSGLIGCMSFGVKSL 122
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 115 bits (290), Expect = 4e-31
Identities = 34/163 (20%), Positives = 67/163 (41%), Gaps = 11/163 (6%)
Query: 125 YDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP-LTKTSHRLRTKTCLRTINPEFH 183
++ T + V + GL DI G SDP+ ++ L ++ ++TKT +++NP+++
Sbjct: 3 HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWN 62
Query: 184 EKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLNLCKHY 242
E++ F + + + V D+++ DFLG+ PL L R K +
Sbjct: 63 EEILFRVLPQR----HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDF 118
Query: 243 PVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNL 285
+ G + L + + K + N + L
Sbjct: 119 VLHPRSHKSRV-----KGYLRLKMTYLPKNGSEDENADQAEEL 156
Score = 101 bits (254), Expect = 7e-26
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 11/121 (9%)
Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH--KRKYKTGVKWKTLNPIFNEEFAIET 332
+ V +I L D G SDP++++ L + +T K+LNP +NEE
Sbjct: 10 VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
Query: 333 KITELSKQTLVITVWDKDYGKSNDYLGCLEL------CCNSKGDRLRHWVDMMKYPDHKH 386
++ V+D++ +D+LG +++ N + +R + D + +P
Sbjct: 70 LPQR---HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHK 126
Query: 387 E 387
Sbjct: 127 S 127
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 111 bits (280), Expect = 5e-30
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 318
G + L++ + + L + ++ +L+ D +P++K YL PD HK K KT + K
Sbjct: 9 GAVKLSVSY--RNGTLFIMVMHIKDLVTEDGAD-PNPYVKTYLLPDTHKTSKRKTKISRK 65
Query: 319 TLNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHW 375
T NP FNE L ++ L ++V + + N +LG + L W
Sbjct: 66 TRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKW 125
Query: 376 VDM 378
+
Sbjct: 126 YQL 128
Score = 111 bits (279), Expect = 7e-30
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC 174
G+++L+V+Y + T L + + K L D +P+ K L+P T + + +TK
Sbjct: 7 GSGAVKLSVSYRNGT--LFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKIS 63
Query: 175 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 226
+T NP F+E L + S+ L + L + VL + + FLG PL
Sbjct: 64 RKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDF 116
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 111 bits (278), Expect = 1e-29
Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 14/157 (8%)
Query: 116 LGSIELTVTYDS-TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK-TSHRLRTKT 173
+ D + + V + GL DI G SDP+ ++ L ++TKT
Sbjct: 5 CAVEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKT 64
Query: 174 CLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISR 232
+++NP+++E++ F + L V D+++ DFLG+ PL L R
Sbjct: 65 IKKSLNPKWNEEILFRVHPQQ----HRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPR 120
Query: 233 DLCLNLCKHYPV-PREEEVWGEEECWQHGKIFLTLCF 268
K + + PR + G + L + +
Sbjct: 121 LERPYTFKDFVLHPRSHKSRV------KGYLRLKMTY 151
Score = 109 bits (273), Expect = 9e-29
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 260 GKIFLTLCFSTKK-RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH--KRKYKTGVK 316
L + R + V +I L D G SDP++++ L ++ +T
Sbjct: 6 AVEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTI 65
Query: 317 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 363
K+LNP +NEE + L+ V+D++ +D+LG +++
Sbjct: 66 KKSLNPKWNEEILFRVHPQQ---HRLLFEVFDENRLTRDDFLGQVDV 109
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 104 bits (262), Expect = 4e-27
Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 10/121 (8%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKR-KYKTGVKW 317
G I + + KK L V +I+ +L S P++K+YL + K KT +
Sbjct: 19 GDIQIGMED--KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIAR 76
Query: 318 KTLNPIFNEEFAIETKITELSKQTLVITVW-DKDYGKSNDYLGCLE--LCCNSKGDRLRH 374
KTL+P++ + + + L + VW D ++G + L +
Sbjct: 77 KTLDPLYQQSLVFD---ESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIG 133
Query: 375 W 375
W
Sbjct: 134 W 134
Score = 93.7 bits (233), Expect = 6e-23
Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Query: 110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDI-HGTSDPFCKLNLVPLTKTSHR 168
+ A +G I++ + L V + RA+ L T P+ K+ L+ +
Sbjct: 12 TLATPAMGDIQIGMEDK--KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAK 69
Query: 169 LRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD-DKYG-HDFLGEARFPLNRL 226
+T+ +T++P + + L F + + L ++V D + F+G A+ L L
Sbjct: 70 KKTRIARKTLDPLYQQSLVF----DESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEEL 125
Query: 227 RP 228
Sbjct: 126 DL 127
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 99.3 bits (248), Expect = 2e-25
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
L V ++K +L+ D +G SDPF L L D + +T +K LNP +N+ F K
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGND----RLQTHTVYKNLNPEWNKVFTFPIKD 70
Query: 335 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK 385
L +TV+D+D K D+LG + + S D + + +
Sbjct: 71 IH---DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQ 118
Score = 95.8 bits (239), Expect = 4e-24
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 10/116 (8%)
Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
L V + +A L A D G SDPFC L L RL+T T + +NPE+++ TF +
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGN-----DRLQTHTVYKNLNPEWNKVFTF-PI 68
Query: 192 SETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPR 246
+ L + V D+D DFLG+ PL +R L +
Sbjct: 69 KDIH---DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFK 121
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 95.5 bits (238), Expect = 4e-24
Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 8/114 (7%)
Query: 128 TTCSLHVTLHRAKGLR---AMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHE 184
++ V + RA + D+ T DP+ +L + R RT+ INP ++E
Sbjct: 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPD--SRKRTRHFNNDINPVWNE 58
Query: 185 KLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNL 238
F L I ++D + + LG A F ++ ++ +++
Sbjct: 59 TFEF---ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIF 109
Score = 94.3 bits (235), Expect = 1e-23
Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 9/108 (8%)
Query: 275 LIVNLIKCTNLI---PMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE 331
V +++ T + D DP+++L++ + +T +NP++NE F
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTT-PDSRKRTRHFNNDINPVWNETFEF- 62
Query: 332 TKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVD 377
+ + L IT+ D +Y ++ LG + G++
Sbjct: 63 -ILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFI 108
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy,
cardiomyopathy, membrane fusion, dystrophin, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 94.8 bits (236), Expect = 1e-23
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 8/116 (6%)
Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
L V + +N+ P G DP + + K + K KT LNP++NE + +
Sbjct: 9 LRVIVESASNI-PKTKFGKPDPIVSVIFKDE----KKKTKKVDNELNPVWNEILEFDLRG 63
Query: 335 TEL-SKQTLVITVWDKDYGKSNDYLGC--LELCCNSKGDRLRHWVDMMKYPDHKHE 387
L +L I V D + N +G + L + ++ + K +
Sbjct: 64 IPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQ 119
Score = 91.7 bits (228), Expect = 1e-22
Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 7/115 (6%)
Query: 127 STTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKL 186
++ L V + A + G DP + K +TK +NP ++E L
Sbjct: 4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKK-----KTKKVDNELNPVWNEIL 57
Query: 187 TFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLNLCK 240
F SL I+V D + G + +G A L L SR L L
Sbjct: 58 EFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLIS 112
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane
associate, lipid binding PROT; 1.96A {Homo sapiens} PDB:
2jqz_A
Length = 132
Score = 92.0 bits (229), Expect = 1e-22
Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 9/121 (7%)
Query: 270 TKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFA 329
++ + + ++ NL D DPF K+ + + + T TL+P +N+ +
Sbjct: 2 SEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS--GQCHSTDTVKNTLDPKWNQHYD 59
Query: 330 IETKITELSKQTLVITVWDKDYGKSND---YLGCLELCCNSKGDRLRHWVDMMKYPDHKH 386
+ ++ I+VW+ +LGC+ L N+ +
Sbjct: 60 LYVG----KTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNP 115
Query: 387 E 387
Sbjct: 116 S 116
Score = 89.4 bits (222), Expect = 7e-22
Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 22/145 (15%)
Query: 127 STTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKL 186
S + +T+ AK L D DPF K+ + + T T T++P++++
Sbjct: 2 SEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCH---STDTVKNTLDPKWNQHY 58
Query: 187 TFYSVSETDLSLQSLHILVLDDDKYGHD----FLGEARFPLNRLRPH-ISRDLCLNLCKH 241
Y S+ I V + K FLG R N + + L+LCK
Sbjct: 59 DLYVGKT-----DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKL 113
Query: 242 YPVPREEEVWGEEECWQHGKIFLTL 266
P + G+I ++L
Sbjct: 114 NP---------SDTDAVRGQIVVSL 129
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 88.9 bits (221), Expect = 1e-21
Identities = 36/139 (25%), Positives = 52/139 (37%), Gaps = 24/139 (17%)
Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR-TINPEFHEKLTFYS 190
L V L AKGL D DP+ +L + ++ PE++E F +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ-----KSNVAEGMGTTPEWNETFIF-T 65
Query: 191 VSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEE 249
VSE L + D D D +GEA PL + S Y V ++EE
Sbjct: 66 VSEGT---TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTA-----YNVVKDEE 117
Query: 250 VWGEEECWQHGKIFLTLCF 268
G+I++ L F
Sbjct: 118 Y--------KGEIWVALSF 128
Score = 86.6 bits (215), Expect = 7e-21
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
L V L+ L D DP+++L + + + P +NE F +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQ---DQKSNVAEGMGTTPEWNETFIF--TV 66
Query: 335 TELSKQTLVITVWDKDYGKSNDYLGCLEL 363
+E + + L ++DKD G +D +G +
Sbjct: 67 SEGTTE-LKAKIFDKDVGTEDDAVGEATI 94
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 87.2 bits (216), Expect = 8e-21
Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 18/112 (16%)
Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
+ + ++ L D G SDP++ + + K K +T + LNP++ E F E
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVG----KTKKRTKTIYGNLNPVWEENFHFECH- 73
Query: 335 TELSKQTLVITVWDKDYGK-----------SNDYLGCLELCCNSKGDRLRHW 375
S + + V D+D S+D+LG + + + W
Sbjct: 74 --NSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVW 123
Score = 84.5 bits (209), Expect = 8e-20
Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 44/157 (28%)
Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
+ +T+ A+GL+A D G+SDP+ + + + RTKT +NP + E F
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGK-----TKKRTKTIYGNLNPVWEENFHFECH 73
Query: 192 SETDLSLQSLHILVLDDDKYG------------HDFLGEARFPLNRLRPHISRDLCLNLC 239
+ +D + + VLD+D DFLG+ + L
Sbjct: 74 NSSD----RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL------------- 116
Query: 240 KHYPVPREEEVW-----GEEECWQHGKIFLTLCFSTK 271
E +VW ++ G I L + K
Sbjct: 117 -----SGEMDVWYNLDKRTDKSAVSGAIRLHISVEIK 148
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 80.3 bits (198), Expect = 4e-18
Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 8/108 (7%)
Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
L + +I + P++++ + + KT T +P + + +
Sbjct: 38 LQITVISAKLKENKKNWFGPSPYVEVTVD----GQSKKTEKCNNTNSPKWKQPLTVIVT- 92
Query: 335 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYP 382
L VW KS+ LG L ++ +
Sbjct: 93 ---PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVT 137
Score = 78.0 bits (192), Expect = 3e-17
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 11/105 (10%)
Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
L +T+ AK P+ ++ + +K +T+ C T +P++ + LT V
Sbjct: 38 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSK-----KTEKCNNTNSPKWKQPLTV-IV 91
Query: 192 SETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLC 235
+ LH V LG A + + L
Sbjct: 92 TPVS----KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLE 132
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 83.5 bits (205), Expect = 2e-17
Identities = 30/179 (16%), Positives = 60/179 (33%), Gaps = 11/179 (6%)
Query: 127 STTCSLHVTLHRAKGLR---AMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFH 183
+ V + RA + D+ T DP+ +L + T R RT+ INP ++
Sbjct: 15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFIS--TTPDSRKRTRHFNNDINPVWN 72
Query: 184 EKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYP 243
E F L I ++D + + LG A F ++ ++ +++ +
Sbjct: 73 ETFEF---ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTE 129
Query: 244 VPREEEVWGEEECWQHGKIFLTLC---FSTKKRALIVNLIKCTNLIPMDSNGFSDPFIK 299
+ E + + L F +++ I +K S +
Sbjct: 130 MVLEMSLEVCSCPDLRFSMALCDQEKTFRQQRKEHIRESMKKLLGPKNSEGLHSARDVP 188
Score = 76.5 bits (187), Expect = 3e-15
Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 7/120 (5%)
Query: 275 LIVNLIKCTNLI---PMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE 331
V +++ T + D DP+++L++ + +T +NP++NE F
Sbjct: 20 FTVVVLRATKVTKGAFGDMLDTPDPYVELFI-STTPDSRKRTRHFNNDINPVWNETFEF- 77
Query: 332 TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHN 391
+ + L IT+ D +Y ++ LG +S + V + + +
Sbjct: 78 -ILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMS 135
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 75.8 bits (186), Expect = 1e-16
Identities = 25/152 (16%), Positives = 48/152 (31%), Gaps = 34/152 (22%)
Query: 129 TCSLHVTLHRAKGLRAMDI----------HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTI 178
L V + A GL+ H DP+ +++ +T T +T
Sbjct: 28 NGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV----DQVRVGQTSTKQKTN 83
Query: 179 NPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLN 237
P ++E+ +V++ L + V + G F+
Sbjct: 84 KPTYNEEFCA-NVTDG----GHLELAVFHETPLGYDHFVANCTLQFQ------------E 126
Query: 238 LCKHYPVPREEEVWGEEECWQHGKIFLTLCFS 269
L + E W + E GK+F+ + +
Sbjct: 127 LLRTTGASDTFEGWVDLE--PEGKVFVVITLT 156
Score = 73.9 bits (181), Expect = 5e-16
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 17/99 (17%)
Query: 275 LIVNLIKCTNLIPMD----------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIF 324
L V + + L P + DP++ + + R +T K KT P +
Sbjct: 31 LRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVD---QVRVGQTSTKQKTNKPTY 87
Query: 325 NEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 363
NEEF L + V+ + + ++ L
Sbjct: 88 NEEFCANVT----DGGHLELAVFHETPLGYDHFVANCTL 122
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 73.3 bits (180), Expect = 5e-16
Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 37/151 (24%)
Query: 131 SLHVTLHRAKGLRAMDI-----------HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTIN 179
L + + A L+ DP+ LN+ S +T T +T +
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV----DDSRIGQTATKQKTNS 62
Query: 180 PEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLNL 238
P +H++ V + + + V D G DF+ L + SR
Sbjct: 63 PAWHDEFVT-DVCNG----RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHF---- 113
Query: 239 CKHYPVPREEEVWGEEECWQHGKIFLTLCFS 269
E W + E GK+++ + S
Sbjct: 114 ----------EDWIDLE--PEGKVYVIIDLS 132
Score = 72.2 bits (177), Expect = 2e-15
Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 22/118 (18%)
Query: 275 LIVNLIKCTNLIPMD-----------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPI 323
L + + + +L P DP+I L + R +T K KT +P
Sbjct: 8 LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD---DSRIGQTATKQKTNSPA 64
Query: 324 FNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS----KGDRLRHWVD 377
+++EF + + + + + V+ +D++ + W+D
Sbjct: 65 WHDEFVTDVC----NGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWID 118
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 65.3 bits (158), Expect = 1e-11
Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 6/125 (4%)
Query: 235 CLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFS 294
C C+ + E L+V+ + +L +
Sbjct: 356 CSRPCRSGQHKSSHDSCQCECQDSKVTNQDCCPRQRGLAHLVVSNFRAEHLWGDYT---- 411
Query: 295 DPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 354
YLK ++++TGV W NP + ++ E + + L + VWD DYG
Sbjct: 412 -TATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFEN-VLLSTGGPLRVQVWDADYGWD 469
Query: 355 NDYLG 359
+D LG
Sbjct: 470 DDLLG 474
Score = 53.4 bits (127), Expect = 7e-08
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 130 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFY 189
L V+ RA+ L +D + K+ RT NP + +K+ F
Sbjct: 394 AHLVVSNFRAEHLWGDYTT-ATDAYLKVFF-----GGQEFRTGVVWNNNNPRWTDKMDFE 447
Query: 190 SVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPL 223
+V + L + V D D D LG
Sbjct: 448 NVLLST--GGPLRVQVWDADYGWDDDLLGSCDRSP 480
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter
release, RIM, MUNC13 domains, exocytosis, metal-binding;
1.44A {Rattus norvegicus} SCOP: b.7.1.1
Length = 131
Score = 51.1 bits (122), Expect = 3e-08
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 13/100 (13%)
Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
L V + +AK A + + + L + + + T +R P + + F
Sbjct: 7 LCVGVKKAKFDGAQE---KFNTYVTLKV-----QNVKSTTIA-VRGSQPSWEQDFMF--- 54
Query: 192 SETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHIS 231
L L + V + +G PL +R
Sbjct: 55 EINRLD-LGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNE 93
Score = 50.7 bits (121), Expect = 4e-08
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
L V + K + + ++ L ++ K T + P + ++F E I
Sbjct: 7 LCVGVKKAKFDGAQEK---FNTYVTLKVQ----NVKSTTIAV-RGSQPSWEQDFMFE--I 56
Query: 335 TELSKQTLVITVWDKDYGKSNDYLGCLEL 363
L L + VW+K + +G + +
Sbjct: 57 NRLDLG-LTVEVWNKGLIW-DTMVGTVWI 83
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.4 bits (122), Expect = 4e-07
Identities = 48/387 (12%), Positives = 99/387 (25%), Gaps = 128/387 (33%)
Query: 105 EYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK 164
+ FV N + + + S+ ++ + R ++ + F K N V +
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR---LYNDNQVFAKYN-VSRLQ 135
Query: 165 TSHRLRT--------------------KTCL-------RTINPEFHEK---LTFYSVSET 194
+LR KT + + + K L + +
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 195 DL---SLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPRE---- 247
+ LQ L + + D + ++ ++ + R L K P
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR-----LLKSKPYENCLLVL 250
Query: 248 EEVWGEEECWQ----HGKIFLT---------LCFSTKKRALIVN-------------LIK 281
V + W KI LT L +T + + L+K
Sbjct: 251 LNVQ-NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 282 CTNLIPMD-----SNGFSDPF----IKLYLKPDLHKRKYKTGVKWKT------------- 319
+ P D +P I ++ L WK
Sbjct: 310 YLDCRPQDLPREVLTT--NPRRLSIIAESIRDGLATWDN-----WKHVNCDKLTTIIESS 362
Query: 320 ---LNP-----IFNEEFAI---ETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK 368
L P +F + ++ I L + +W +D + +
Sbjct: 363 LNVLEPAEYRKMF-DRLSVFPPSAHIPT---ILLSL-IWFDV--IKSDVMVVVNKLHK-Y 414
Query: 369 GDRLRHWVDMMKYPDHKHEGIHNLSIK 395
+ + I ++ ++
Sbjct: 415 SLVEKQPKESTIS-------IPSIYLE 434
Score = 31.4 bits (70), Expect = 0.61
Identities = 23/168 (13%), Positives = 47/168 (27%), Gaps = 52/168 (30%)
Query: 152 DPFCKLNLV-----PLTKTSHRLRTKTCLRTIN-PEFHEKL-TFYSVSETDLSLQSLHIL 204
+ K +LV T + + + ++ N H + Y++ + + S ++
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK---TFDSDDLI 465
Query: 205 VLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFL 264
D+Y + +G H H E +FL
Sbjct: 466 PPYLDQYFYSHIG-----------H-----------HLKNIEHPERMTLFR-----MVFL 498
Query: 265 TLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYK 312
F +K I+ + S + +L + YK
Sbjct: 499 DFRFLEQK-------IRHDSTAWNASGSILNTLQQL--------KFYK 531
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc
finger, synapto phorbol-ester binding; 1.78A {Rattus
norvegicus} SCOP: b.7.1.1
Length = 167
Score = 44.6 bits (105), Expect = 1e-05
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 13/96 (13%)
Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
L V + +AK A + + + L + + T+ +R P + + F +
Sbjct: 16 LCVGVKKAKFDGAQE---KFNTYVTLKVQNVESTTIAVRGS------QPSWEQDFMF-EI 65
Query: 192 SETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLR 227
+ DL L + V + +G PL +R
Sbjct: 66 NRLDLGLT---VEVWNKGLIWDTMVGTVWIPLRTIR 98
Score = 40.8 bits (95), Expect = 2e-04
Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 25/114 (21%)
Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
L V + K + + ++ L ++ + T + + P + ++F E
Sbjct: 16 LCVGVKKAKFDGAQEK---FNTYVTLKVQ----NVESTT-IAVRGSQPSWEQDFMFEINR 67
Query: 335 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEG 388
+L L + VW+K + +G W+ + EG
Sbjct: 68 LDLG---LTVEVWNKGLIW-DTMVG-------------TVWIPLRTIRQSNEEG 104
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 45.7 bits (107), Expect = 2e-05
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 7/106 (6%)
Query: 127 STTCSLHVTLHRAKGLRAMDIHGTS--DPFCKLNLVPLTKTSHRLRTKTCLR-TINPEFH 183
L V + + L ++ + S DP + + + + + +T NP +
Sbjct: 494 WRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 553
Query: 184 EKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 228
+ F V+ DL+L + +V D D DF+G++ P N L+
Sbjct: 554 MEFEF-EVTVPDLAL--VRFMVEDYDSSSKNDFIGQSTIPWNSLKQ 596
Score = 41.8 bits (97), Expect = 3e-04
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 10/108 (9%)
Query: 271 KKRALIVNLIKCTNLIPMDSNGFS--DPFIKLYL---KPDLHKRKYKTGVKWKTLNPIFN 325
+ L V +I L ++ N S DP + + + D R+ + NP ++
Sbjct: 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAV-ITNNGFNPRWD 553
Query: 326 EEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDR 371
EF E + +L+ + V D D ND++G + +G R
Sbjct: 554 MEFEFEVTVPDLA--LVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYR 599
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V
hearing, membrane, synapse, transmembrane, membrane
protein; 1.95A {Rattus norvegicus}
Length = 144
Score = 43.1 bits (101), Expect = 2e-05
Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 13/118 (11%)
Query: 131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYS 190
+L V L LR G +D K+ + S L + + F +
Sbjct: 22 ALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFR-----WP 71
Query: 191 VSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL--RPHISRDLCLNLCKHYPVP 245
V+ + + L I + + K + +G R L ++ + L + +
Sbjct: 72 VASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIK 129
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 8e-04
Identities = 37/264 (14%), Positives = 70/264 (26%), Gaps = 78/264 (29%)
Query: 57 MSRHTL-PLTVNENSISPVSPLSPICNGNFNTQQESSGTLKRGVITEEKEYFVTS----- 110
M ++ PLT++ S+ V + F Q L +E F
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPT--ASFFIASQ-----L--------QEQFNKILPEPT 45
Query: 111 ----QADTNLGSIELTVTY--------DSTTCS-----LHVTLHRAKG--LRAMDIHGTS 151
D EL + + + L++ L + L DIH +
Sbjct: 46 EGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA 105
Query: 152 DPFCKLNLVPLTKTSHRLRT----KTCLRTINPEFHE----------KLTFYSV------ 191
+ N L KT ++ + + + ++
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 192 SETDLS-LQSLHILVLDDDKYGH---DFLGEARFPLNRL-RPHISRDLCLNLCKHYPVPR 246
++ L+ L+ Y D + + L+ L R + + K +
Sbjct: 166 TDDYFEELRDLY------QTYHVLVGDLIKFSAETLSELIRTTLDAE------KVFTQGL 213
Query: 247 EEEVWGEEECWQHGKIFLTLC-FS 269
W E K +L S
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPIS 237
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane,
phosphoprotein, SH3-binding, signaling protein; 3.00A
{Rattus norvegicus}
Length = 483
Score = 40.0 bits (92), Expect = 0.001
Identities = 17/119 (14%), Positives = 32/119 (26%), Gaps = 8/119 (6%)
Query: 273 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIET 332
L + +I+ L P + +L L L+ R + E F
Sbjct: 11 NVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNN 65
Query: 333 KITELSKQTLVITVWDKDYGKSND-YLGCLE--LCCNSKGDRLRHWVDMMKYPDHKHEG 388
+ + + DK K Y+G + + + W + G
Sbjct: 66 LPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSG 124
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 38.8 bits (90), Expect = 0.002
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 269 STKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEF 328
++ L+V++I+ T L NG S+P+ ++ + + T TLNP +N F
Sbjct: 383 TSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYT----TRTIQDTLNPKWN--F 436
Query: 329 AIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 363
+ I +L + L +T++D+D +D+LG E+
Sbjct: 437 NCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEI 471
Score = 37.3 bits (86), Expect = 0.008
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Query: 100 ITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNL 159
I E ++ ++ + + S L V + A L+A +G S+P+C++++
Sbjct: 357 IKAASEQYIDTEKKQREKAYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISM 416
Query: 160 VPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGE 218
S T+T T+NP+++ F+ DL L + + D D++ DFLG
Sbjct: 417 -----GSQSYTTRTIQDTLNPKWNFNCQFFI---KDLYQDVLCLTLFDRDQFSPDDFLGR 468
Query: 219 ARFPLNRLR 227
P+ ++R
Sbjct: 469 TEIPVAKIR 477
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 37.3 bits (85), Expect = 0.009
Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 9/99 (9%)
Query: 134 VTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL---RTINPEFHEK-LTFY 189
TL + + ++ L L R +INP + E+ F
Sbjct: 678 TTLSITVISGQFLSERSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFE 737
Query: 190 SVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRP 228
+ +L+ L + V+++ + FLG P+N L
Sbjct: 738 KILMPELAS--LRVAVMEEG---NKFLGHRIIPINALNS 771
Score = 28.0 bits (61), Expect = 7.8
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 298 IKLYLKPDLHKRKYKTGVKWK--TLNPIFNEEFAIETKITELSKQTLVITVWDKD 350
++L+ P KR+Y+T + ++NP++ EE + KI +L + V ++
Sbjct: 701 VELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG 755
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 36.1 bits (82), Expect = 0.019
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 165 TSHRLRTKTCLR-TINPEFHEK-LTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFP 222
T + RT+T + NP + E+ F V L+ L I ++ F+G P
Sbjct: 757 TRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLAS--LRIAAFEEG---GKFVGHRILP 811
Query: 223 LNRLRP 228
++ +R
Sbjct: 812 VSAIRS 817
Score = 30.4 bits (67), Expect = 1.3
Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 298 IKLYLKPDLHKRKYKTG-VKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 350
+ ++ P +RKY+T + + NP+++EE K+ + +L I +++
Sbjct: 748 VDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG 801
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein
binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Length = 126
Score = 33.2 bits (75), Expect = 0.046
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 8/90 (8%)
Query: 294 SDPFIKLYLKPDLHKRKYKTGV-KWKTLNPIFNEEFAIETKITELSKQTLVITVWDK-DY 351
+ PF + +K L + KT V K T+ P + F + + I + +
Sbjct: 27 NQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIY----EGRVIQIVLMRAAEE 82
Query: 352 GKSNDYLGCLEL--CCNSKGDRLRHWVDMM 379
S +G L C + W+D+
Sbjct: 83 PVSEVTVGVSVLAERCKKNNGKAEFWLDLQ 112
Score = 30.8 bits (69), Expect = 0.31
Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
L + + + + PFC + + T T+ PE+ TF +
Sbjct: 8 LRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKS--TFDAH 65
Query: 192 SETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRL 226
+ + I+++ + + E ++ L
Sbjct: 66 IYEG---RVIQIVLMRA---AEEPVSEVTVGVSVL 94
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich,
phosphotyrosine binding, TCR, T-cell, diacylglycerol,
phorbol ester, structural genomics; NMR {Homo sapiens}
Length = 138
Score = 32.7 bits (74), Expect = 0.066
Identities = 14/98 (14%), Positives = 29/98 (29%), Gaps = 13/98 (13%)
Query: 132 LHVTLHRAKGLRAMDIHG-TSDPFCKLNL--VPLTKTSHRLRTKTCLRTINPEFHEKLTF 188
L + L G +P+C + + ++ K T+ P +
Sbjct: 12 LRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKK--PTMYPPWDSTFDA 69
Query: 189 YSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRL 226
+ + + I+V + D + E L L
Sbjct: 70 HINKG-----RVMQIIVKGKNV---DLISETTVELYSL 99
Score = 28.5 bits (63), Expect = 2.1
Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 8/90 (8%)
Query: 294 SDPFIKLYLKPDLHKRKYKTGV-KWKTLNPIFNEEFAIETKITELSKQTLVITVWDK-DY 351
+P+ + +K + + + K T+ P ++ F + + I V K
Sbjct: 32 VNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHIN----KGRVMQIIVKGKNVD 87
Query: 352 GKSNDYLGCLELC--CNSKGDRLRHWVDMM 379
S + L C + W+++
Sbjct: 88 LISETTVELYSLAERCRKNNGKTEIWLELK 117
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 34.2 bits (77), Expect = 0.094
Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 152 DPFCKLNL--VPLTKTSHRLRTKTCLR-TINPEFHEKL-TFYSVSETDLSLQSLHILVLD 207
+ ++ + +P + +TK ++P + EK+ F V DL++ + I+V +
Sbjct: 668 SSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAV--VRIIVSE 725
Query: 208 DDKYGHDFLGEARFPLNRLRP 228
++ F+G PL+ ++P
Sbjct: 726 EN---GKFIGHRVMPLDGIKP 743
Score = 29.5 bits (65), Expect = 2.6
Identities = 19/123 (15%), Positives = 48/123 (39%), Gaps = 14/123 (11%)
Query: 257 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKL---YLKPDLHKRKYKT 313
+ K F ST + + S+ ++++ L D ++K+KT
Sbjct: 630 RKLDKRFDPFTESTVDGVVAGTIEIKIISAQFLSDKQISSYVEVEMYGLPTDTVRKKFKT 689
Query: 314 G-VKWKTLNPIFNEE--FAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSK 368
++ ++P ++E+ + + +L+ + I V +++ ++G + L
Sbjct: 690 KIIENNGMDPYYDEKVFVFKKVVLPDLA--VVRIIVSEEN----GKFIGHRVMPLDGIKP 743
Query: 369 GDR 371
G R
Sbjct: 744 GYR 746
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 32.4 bits (74), Expect = 0.32
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 45 FSSSATVRSSPLMSRHTLPLTVNENSISPVSPLSP 79
FSSSATV + +P+ E P+ P +P
Sbjct: 132 FSSSATVYGDATRFPNMIPIP--EE--CPLGPTNP 162
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for
infectious disease, ssgcid, isomerase, NAD; HET: NAD
GUD; 1.90A {Burkholderia pseudomallei 1710B}
Length = 341
Score = 30.9 bits (71), Expect = 0.64
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 8/35 (22%)
Query: 45 FSSSATVRSSPLMSRHTLPLTVNENSISPVSPLSP 79
FSSSATV P P+ E P+S +P
Sbjct: 126 FSSSATVYGVP----ERSPID--ET--FPLSATNP 152
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia,
isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A*
1i3n_A*
Length = 348
Score = 27.5 bits (62), Expect = 7.7
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 11/38 (28%)
Query: 45 FSSSATVRSSPLMSRHTLPLTVNENSISPVSPLSPICN 82
FSSSATV +P LPL E P N
Sbjct: 129 FSSSATVYGNP----QYLPLD--EA-----HPTGGCTN 155
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.410
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,918,683
Number of extensions: 339990
Number of successful extensions: 837
Number of sequences better than 10.0: 1
Number of HSP's gapped: 661
Number of HSP's successfully gapped: 107
Length of query: 399
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 303
Effective length of database: 4,021,377
Effective search space: 1218477231
Effective search space used: 1218477231
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)