RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12136
(399 letters)
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 138
Score = 116 bits (291), Expect = 3e-32
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 318
G++ ++LC+ + L V ++K +L D +G SDP++K+ L + K KT VK
Sbjct: 2 GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC 61
Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 378
T N +FNE F + L + ++ V D + G N+ +G L L ++G HW ++
Sbjct: 62 TPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEI 121
Query: 379 MKYPDHKHEGIHNL 392
+P + H L
Sbjct: 122 CDFPRRQIAKWHML 135
Score = 89.8 bits (222), Expect = 3e-22
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 2/131 (1%)
Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
G + +++ Y STT +L V + +A+ L D+ G SDP+ K+NL K + +T
Sbjct: 2 GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC 61
Query: 177 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLC 235
T N F+E F + L S+ LVLD ++ ++ +G
Sbjct: 62 TPNAVFNELFVF-DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKE 120
Query: 236 LNLCKHYPVPR 246
+ + +
Sbjct: 121 ICDFPRRQIAK 131
>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 137
Score = 111 bits (277), Expect = 3e-30
Identities = 70/134 (52%), Positives = 99/134 (73%), Gaps = 1/134 (0%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVKWK 318
GKI ++L +ST++ LIV +I+C +L MD+NG+SDPF+KL+LKPD K K+KT +K K
Sbjct: 2 GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK 61
Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 378
TLNP FNEEF + K ++L+K++L I+VWD D GKSNDY+G +L ++KG+RL+HW +
Sbjct: 62 TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYEC 121
Query: 379 MKYPDHKHEGIHNL 392
+K D K E H L
Sbjct: 122 LKNKDKKIERWHQL 135
Score = 81.0 bits (199), Expect = 4e-19
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
G I +++ Y + L V + R L AMD +G SDPF KL L P + +T+ +
Sbjct: 2 GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK 61
Query: 177 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLC 235
T+NPEF+E+ + + +DL+ +SL I V D D +D++G + ++ +
Sbjct: 62 TLNPEFNEEFFY-DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYE 120
Query: 236 LNLCKHYPVPR 246
K + R
Sbjct: 121 CLKNKDKKIER 131
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 157
Score = 103 bits (257), Expect = 5e-27
Identities = 48/134 (35%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKY-KTGVKWK 318
G I +L + L V +++ NL MD G SDP++K++L + + K KT +K
Sbjct: 12 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 71
Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 378
TLNP +NE F+ E ++ K +V+TV D D ND +G + + NS G LRHW DM
Sbjct: 72 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 131
Query: 379 MKYPDHKHEGIHNL 392
+ P H L
Sbjct: 132 LANPRRPIAQWHTL 145
Score = 88.7 bits (219), Expect = 9e-22
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 2/133 (1%)
Query: 115 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC 174
LG I ++ Y T L V + AK L+ MD+ G SDP+ K++L+ K + +T
Sbjct: 10 KLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIK 69
Query: 175 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRD 233
T+NP ++E +F V + + + VLD DK G +D +G+ N +
Sbjct: 70 KNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHW 128
Query: 234 LCLNLCKHYPVPR 246
+ P+ +
Sbjct: 129 SDMLANPRRPIAQ 141
>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis
protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 101 bits (252), Expect = 9e-27
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
G + + + +D L VT+ AK L + + +P+ K+ +P ++ RTKT +
Sbjct: 1 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 60
Query: 177 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG---HDFLGEARFPLNRL 226
T+ P++++ + V + + L I + D + +FLGE L
Sbjct: 61 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 113
Score = 90.5 bits (224), Expect = 1e-22
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRK-YKTGVKWK 318
G++ + L F LIV ++ +L + +P++K+Y PD + +T K
Sbjct: 1 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 60
Query: 319 TLNPIFNEEFAIE-TKITELSKQTLVITVWDKDYGK--SNDYLGCLELCCNS-KGDRLRH 374
TL P +N+ F E ++ L IT+WD+ + +++LG + + + D H
Sbjct: 61 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 120
Query: 375 WVD 377
W
Sbjct: 121 WYK 123
>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 143
Score = 99.4 bits (247), Expect = 7e-26
Identities = 44/127 (34%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 254 EECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKT 313
+E + GK+ +L + + L+V +I+ L +D G SDP++K++L PD K+K++T
Sbjct: 15 KEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-KKKKFET 73
Query: 314 GVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS--KGDR 371
V KTLNP+FNE+F + +EL +TLV+ V+D D +D +G ++ N+ G
Sbjct: 74 KVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHV 133
Query: 372 LRHWVDM 378
W D+
Sbjct: 134 TEEWRDL 140
Score = 96.0 bits (238), Expect = 2e-24
Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 4/130 (3%)
Query: 110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 169
+ + LG ++ ++ YD L V + +A L A+D+ GTSDP+ K+ L+P K
Sbjct: 14 PKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKF-- 71
Query: 170 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 228
TK +T+NP F+E+ TF V ++L ++L + V D D++ HD +GE + P+N +
Sbjct: 72 ETKVHRKTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF 130
Query: 229 HISRDLCLNL 238
+ +L
Sbjct: 131 GHVTEEWRDL 140
>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 145
Score = 94.9 bits (235), Expect = 4e-24
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKP-DLHKRKYKTGVKWK 318
G++ +LC+ L V +IK +NL MD GFSDP++K L +K KT +K
Sbjct: 7 GELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN 66
Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDR-LRHWVD 377
TLNP +NE + + L I V D D N+ +G + + HW +
Sbjct: 67 TLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAE 126
Query: 378 MMKYPDHKHEGIHNLS 393
M+ P E H L
Sbjct: 127 MLANPRKPVEHWHQLV 142
Score = 82.2 bits (202), Expect = 2e-19
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Query: 114 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKT 173
+LG + ++ Y T L VT+ +A L+AMD+ G SDP+ K +L+ + + +T
Sbjct: 4 ADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSI 63
Query: 174 CLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPH 229
T+NP ++E L F V+ + L I V+D D G ++ +G R PH
Sbjct: 64 KKNTLNPTYNEALVF-DVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPH 119
>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 132
Score = 90.5 bits (224), Expect = 1e-22
Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 5/129 (3%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKP-DLHKRKYKTGVKWK 318
G+I++ + LIV + NL+PMD NG SDP++KL L P + K KT
Sbjct: 4 GRIYIQAHIDREV--LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC 61
Query: 319 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS-KGDRLRHWVD 377
+LNP +NE F + K ++ + L + +WD D ND++G L + + + W
Sbjct: 62 SLNPEWNETFRFQLKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFK 120
Query: 378 MMKYPDHKH 386
++ + ++
Sbjct: 121 LLSQEEGEY 129
Score = 85.1 bits (210), Expect = 9e-21
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 176
G I + D L V + AK L MD +G SDP+ KL L+P K+ + +TKT
Sbjct: 4 GRIYIQAHIDREV--LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC 61
Query: 177 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 228
++NPE++E F + E+D + L + + D D +DF+G F ++ L+
Sbjct: 62 SLNPEWNETFRF-QLKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQK 112
>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 87.1 bits (215), Expect = 3e-21
Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHG-TSDPFCKLNLVPLTKTSHR 168
S + LG++ ++ Y+ + V + A+GL AMD TSDP+ K+ ++P K H+
Sbjct: 2 SSGSSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKK--HK 59
Query: 169 LRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLR 227
++T+ +T++P F E TFY + T + +LH +L D++ D +GE PL+ +
Sbjct: 60 VKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE 119
Query: 228 P 228
Sbjct: 120 L 120
Score = 77.5 bits (190), Expect = 6e-18
Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Query: 258 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGF-SDPFIKLYLKPDLHKRKYKTGVK 316
G +F +L ++ +++A +VN+ + L MD SDP+IK+ + P+ K K KT V
Sbjct: 7 GLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE-KKHKVKTRVL 65
Query: 317 WKTLNPIFNEEF-AIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS---KGDRL 372
KTL+P F+E F T++ + L T+ D +D +G + + + ++
Sbjct: 66 RKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKM 125
Query: 373 RHWVDMMKYP 382
+++ P
Sbjct: 126 LMNREIISGP 135
>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 130
Score = 80.0 bits (196), Expect = 8e-19
Identities = 44/125 (35%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 319
G+I L + L+V +++ +L DSNGFSDP++K+YL PD K+K++T V KT
Sbjct: 5 GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPD-RKKKFQTKVHRKT 63
Query: 320 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK----GDRLRHW 375
LNPIFNE F + EL+++ L +V+D D +D +G + L + W
Sbjct: 64 LNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLW 123
Query: 376 VDMMK 380
D+++
Sbjct: 124 RDILE 128
Score = 68.4 bits (166), Expect = 8e-15
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 116 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 175
G I + Y + L V + +A L A D +G SDP+ K+ L+P K +TK
Sbjct: 4 CGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKF--QTKVHR 61
Query: 176 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRD 233
+T+NP F+E F SV +L+ + LH V D D++ HD +G+ D
Sbjct: 62 KTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPD 119
>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 142
Score = 79.6 bits (195), Expect = 2e-18
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 12/135 (8%)
Query: 117 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP---------LTKTSH 167
G I+L + YD L + + +A+ L D +G SDPF K+ L+P +
Sbjct: 7 GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 168 RLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 226
+ RTK +++NPE+++ + + S+S L ++L + V D D++ +DFLGE L+
Sbjct: 65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124
Query: 227 RPHISRDLCLNLCKH 241
+ L +
Sbjct: 125 SHLDNTPRWYPLKEQ 139
Score = 76.1 bits (186), Expect = 3e-17
Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 15/132 (11%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH----------KR 309
G+I L + + LI+++++ NL+P D+NG+SDPF+K+YL P +
Sbjct: 7 GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 310 KYKTGVKWKTLNPIFNEEFAIE-TKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCN 366
K +T K+LNP +N+ + + +L K+TL +TVWD D SND+LG ++L
Sbjct: 65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124
Query: 367 SKGDRLRHWVDM 378
S D W +
Sbjct: 125 SHLDNTPRWYPL 136
>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens)
[TaxId: 9606]}
Length = 138
Score = 74.9 bits (183), Expect = 6e-17
Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 5/123 (4%)
Query: 260 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 319
K+ L + +K L V ++ + +G D +++ + + +T +K +
Sbjct: 13 PKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQ 69
Query: 320 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVD 377
L+ + E + EL TL +T+ D + G L L S W +
Sbjct: 70 LHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGE 129
Query: 378 MMK 380
+
Sbjct: 130 LKT 132
Score = 65.3 bits (158), Expect = 1e-13
Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 6/135 (4%)
Query: 110 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 169
S + + + YD L VT A + G D + + ++ S
Sbjct: 6 SGSWNQAPKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVAN-RTGSVEA 61
Query: 170 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLRP 228
+T R ++ + E L ++E +L +L + + D++ GE R L+
Sbjct: 62 QTALKKRQLHTTWEEGLVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSV 120
Query: 229 HISRDLCLNLCKHYP 243
+ L P
Sbjct: 121 PLGAAQWGELKTSGP 135
>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 67.1 bits (163), Expect = 3e-14
Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)
Query: 132 LHVTLHRAKGLR---AMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTF 188
V + RA + D+ T DP+ +L + R RT+ INP ++E
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFIST--TPDSRKRTRHFNNDINPVWNE---T 59
Query: 189 YSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNL 238
+ L I ++D + + LG A F ++ ++ +++
Sbjct: 60 FEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIF 109
Score = 60.5 bits (146), Expect = 4e-12
Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 13/130 (10%)
Query: 275 LIVNLIKCTNLIP---MDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE 331
V +++ T + D DP+++L++ + +T +NP++NE F
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTT-PDSRKRTRHFNNDINPVWNETFEFI 63
Query: 332 TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS--KGDRLRHWVDMMKYPDHKHEGI 389
+ + L IT+ D +Y ++ LG +S G++ + E +
Sbjct: 64 --LDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIF----NQVTEMV 116
Query: 390 HNLSIKPLSS 399
+S++ SS
Sbjct: 117 LEMSLEVASS 126
>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 136
Score = 65.9 bits (160), Expect = 9e-14
Identities = 37/138 (26%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
L V L AKGL D DP+ +L + S PE++E F +V
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKS----NVAEGMGTTPEWNETFIF-TV 66
Query: 192 SETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEV 250
SE L + D D D +GEA PL + S Y V ++EE
Sbjct: 67 SEGT---TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPP-----TAYNVVKDEEY 118
Query: 251 WGEEECWQHGKIFLTLCF 268
G+I++ L F
Sbjct: 119 --------KGEIWVALSF 128
Score = 60.9 bits (147), Expect = 5e-12
Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
L V L+ L D DP+++L + + + + P +NE F +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCR---TQDQKSNVAEGMGTTPEWNETFIFT--V 66
Query: 335 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNS---KGDRLRHWVDMMKYPDHKHEGIHN 391
+E + L ++DKD G +D +G + +G +++K D +++G
Sbjct: 67 SEGT-TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK--DEEYKGEIW 123
Query: 392 LSIK 395
+++
Sbjct: 124 VALS 127
>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1
(PLC-D1), C-terminal domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 131
Score = 63.6 bits (154), Expect = 4e-13
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 8/113 (7%)
Query: 271 KKRALIVNLIKCTNL--IPMDSNGFSDPFIKLYLK--PDLHKRKYKTGVKWKTLNPIFNE 326
+ L V +I L + + N DP + + + + + NP ++
Sbjct: 2 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDM 61
Query: 327 EFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVD 377
EF E +T + V D D ND++G + +G R H +
Sbjct: 62 EFEFE--VTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLS 112
Score = 55.2 bits (132), Expect = 4e-10
Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 8/118 (6%)
Query: 132 LHVTLHRAKGLR--AMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTI-NPEFHEKLTF 188
L V + + L + + DP + + + + + +T NP + + F
Sbjct: 6 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65
Query: 189 YSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLRPHISRDLCLNLCKHYPVP 245
L + +V D D + F+G++ P N L+ R + L P
Sbjct: 66 EVTVPD---LALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY-RHVHLLSKNGDQHP 119
>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane
domain-containing protein 2, MCTP2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 59.8 bits (144), Expect = 1e-11
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 334
L V ++K +L+ D +G SDPF L L + +T +K LNP +N+ F T
Sbjct: 8 LQVKVLKAADLLAADFSGKSDPFCLLELG----NDRLQTHTVYKNLNPEWNKVF---TFP 60
Query: 335 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHE 387
+ L +TV+D+D K D+LG + + S D + + +
Sbjct: 61 IKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAF 113
Score = 59.4 bits (143), Expect = 1e-11
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
L V + +A L A D G SDPFC L + RL+T T + +NPE+++ TF
Sbjct: 8 LQVKVLKAADLLAADFSGKSDPFCL-----LELGNDRLQTHTVYKNLNPEWNKVFTF--- 59
Query: 192 SETDLSLQSLHILVLDDDK-YGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPR 246
L + V D+D DFLG+ PL +R L +
Sbjct: 60 -PIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFK 114
>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 123
Score = 52.1 bits (124), Expect = 5e-09
Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 10/110 (9%)
Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIETK 333
+ N + +L + S PF + +K L R K T+ P + F
Sbjct: 7 ISFNSYELGSLQAE--DDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIY 64
Query: 334 ITELSKQTLVITVWDKDYGKSNDY---LGCLELCCNSKGDRLRHWVDMMK 380
+ + I + ++ + L C + W+D+
Sbjct: 65 E----GRVIQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP 110
Score = 44.7 bits (105), Expect = 2e-06
Identities = 15/109 (13%), Positives = 34/109 (31%), Gaps = 9/109 (8%)
Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
+ + L+A D S PFC + + T T+ PE+
Sbjct: 7 ISFNSYELGSLQAED--DASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDA--- 61
Query: 192 SETDLSLQSLHILVLDDDKY--GHDFLGEARFPLNRLRPHISRDLCLNL 238
+ + I+++ + +G + + + + L+L
Sbjct: 62 --HIYEGRVIQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDL 108
>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 51.7 bits (123), Expect = 6e-09
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 11/105 (10%)
Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
L +T+ AK P+ ++ + +K +T+ C T +P++ + LT
Sbjct: 8 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSK-----KTEKCNNTNSPKWKQPLTVIVT 62
Query: 192 SETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLC 235
+ L + V LG A + + L
Sbjct: 63 PVSKLHFR-----VWSHQTLKSDVLLGTAALDIYETLKSNNMKLE 102
Score = 45.5 bits (107), Expect = 1e-06
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 8/94 (8%)
Query: 270 TKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFA 329
T K L + +I + P++++ + K + T +P + +
Sbjct: 3 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTE----KCNNTNSPKWKQPLT 58
Query: 330 IETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 363
+ L VW KS+ LG L
Sbjct: 59 VIVTP----VSKLHFRVWSHQTLKSDVLLGTAAL 88
>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 122
Score = 51.1 bits (122), Expect = 9e-09
Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 14/110 (12%)
Query: 275 LIVNLIKCTNLIPMDSNGFSDPFIKLYLK--PDLHKRKYKTG--VKWKTLNPIFNEEFAI 330
L + +I L ++++ L P KR+Y+T ++NP++ EE +
Sbjct: 3 LSITVISGQFLSERSV----RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58
Query: 331 ETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVDM 378
KI +L + V ++ N +LG + + + G
Sbjct: 59 FEKILMPELASLRVAVMEEG----NKFLGHRIIPINALNSGYHHLCLHSE 104
Score = 48.4 bits (115), Expect = 8e-08
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 12/118 (10%)
Query: 131 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPL---TKTSHRLRTKTCLRTINPEFHEKLT 187
+L +T+ + L + + ++ L L K +R + +INP + E+
Sbjct: 2 TLSITVISGQFLSERSV----RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEE-P 56
Query: 188 FYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVP 245
F L SL + V+++ + FLG P+N L LCL+ + P+
Sbjct: 57 FVFEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSGY-HHLCLHSESNMPLT 110
>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 128
Score = 50.5 bits (120), Expect = 1e-08
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 13/96 (13%)
Query: 132 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 191
L V + +AK A + + + L + + T R P + + F
Sbjct: 4 LCVGVKKAKFDGAQE---KFNTYVT-----LKVQNVKSTTIAV-RGSQPSWEQDFMFEIN 54
Query: 192 SETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLR 227
L + V + +G PL +R
Sbjct: 55 RLDL----GLTVEVWNKGLIWDTMVGTVWIPLRTIR 86
>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 136
Score = 44.5 bits (104), Expect = 2e-06
Identities = 23/124 (18%), Positives = 40/124 (32%), Gaps = 23/124 (18%)
Query: 132 LHVTLHRAKGLRAMDIH-----------GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINP 180
L + + A L+ DP+ LN S +T T +T +P
Sbjct: 8 LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALN----VDDSRIGQTATKQKTNSP 63
Query: 181 EFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISR--DLCLN 237
+H++ + + L V D G DF+ L + SR + ++
Sbjct: 64 AWHDEFVTDVCNGRKIELA-----VFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWID 118
Query: 238 LCKH 241
L
Sbjct: 119 LEPE 122
Score = 43.3 bits (101), Expect = 6e-06
Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 22/121 (18%)
Query: 275 LIVNLIKCTNLIPMD-----------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPI 323
L + + + +L P DP+I L + + T K KT +P
Sbjct: 8 LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQ---TATKQKTNSPA 64
Query: 324 FNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGC----LELCCNSKGDRLRHWVDMM 379
+++EF + + + + V+ +D++ E + W+D+
Sbjct: 65 WHDEFVTDVCNG----RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE 120
Query: 380 K 380
Sbjct: 121 P 121
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus
musculus), variant C [TaxId: 10090]}
Length = 182
Score = 27.1 bits (59), Expect = 3.2
Identities = 11/55 (20%), Positives = 23/55 (41%)
Query: 96 KRGVITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGT 150
KRG +K +F D ++G I + + + ++ + A G + G+
Sbjct: 1 KRGPSVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGS 55
>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 189
Score = 26.5 bits (57), Expect = 4.6
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 190 SVSETDLSLQSLHILVLDDD 209
S + SL+ L +LVL+
Sbjct: 1 SANSLLGSLRELQVLVLNPP 20
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 26.1 bits (56), Expect = 6.0
Identities = 20/116 (17%), Positives = 40/116 (34%)
Query: 272 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE 331
K L+ L+ I D G + I + + ++ E IE
Sbjct: 13 KSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIE 72
Query: 332 TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHE 387
+ E+ K +V+ V D + LE N + + + VD+++ + +
Sbjct: 73 RTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEI 128
>d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 295
Score = 26.5 bits (58), Expect = 6.6
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
Query: 207 DDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVP------REEEVWGEEECWQHG 260
D KY DF L DL +L K YP+ E++ ++
Sbjct: 113 KDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPFAEDDWEAWSHFFKTA 172
Query: 261 KIFL 264
I +
Sbjct: 173 GIQI 176
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.410
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,480,016
Number of extensions: 68368
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 45
Length of query: 399
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 312
Effective length of database: 1,213,086
Effective search space: 378482832
Effective search space used: 378482832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.9 bits)