BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12137
(224 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 146 bits (369), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 70/137 (51%), Positives = 102/137 (74%), Gaps = 1/137 (0%)
Query: 83 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVK 141
+ GKI ++L +ST++ LIV +I+C +L MD+NG+SDPF+KL+LKPD+ K+ K+KT +K
Sbjct: 22 ERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIK 81
Query: 142 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWV 201
KTLNP FNEEF + K ++L+K++L I+VWD D GKSNDY+G +L ++KG+RL+HW
Sbjct: 82 KKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWY 141
Query: 202 DMMKYPDHKHEGIHNLS 218
+ +K D K E H L
Sbjct: 142 ECLKNKDKKIERWHQLQ 158
Score = 34.3 bits (77), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLD-DDKYGHDFLGEARFPLN 49
+T+NPEF+E+ FY + +DL+ +SL I V D D +D++G + ++
Sbjct: 83 KTLNPEFNEEF-FYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGIS 131
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/135 (51%), Positives = 101/135 (74%), Gaps = 1/135 (0%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWK 143
GKI ++L +ST++ LIV +I+C +L MD+NG+SDPF+KL+LKPD+ K+ K+KT +K K
Sbjct: 2 GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK 61
Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 203
TLNP FNEEF + K ++L+K++L I+VWD D GKSNDY+G +L ++KG+RL+HW +
Sbjct: 62 TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYEC 121
Query: 204 MKYPDHKHEGIHNLS 218
+K D K E H L
Sbjct: 122 LKNKDKKIERWHQLQ 136
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLD-DDKYGHDFLGEARFPLN 49
+T+NPEF+E+ FY + +DL+ +SL I V D D +D++G + ++
Sbjct: 61 KTLNPEFNEEF-FYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGIS 109
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 142 bits (358), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 100/137 (72%), Gaps = 1/137 (0%)
Query: 83 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVK 141
+ GKI ++L +ST++ LIV +I+C +L D+NG+SDPF+KL+LKPD K+ K+KT +K
Sbjct: 22 ERGKILVSLXYSTQQGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIK 81
Query: 142 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWV 201
KTLNP FNEEF + K ++L+K++L I+VWD D GKSNDY+G +L ++KG+RL+HW
Sbjct: 82 KKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWY 141
Query: 202 DMMKYPDHKHEGIHNLS 218
+ +K D K E H L
Sbjct: 142 ECLKNKDKKIERWHQLQ 158
Score = 33.9 bits (76), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLD-DDKYGHDFLGEARFPLN 49
+T+NPEF+E+ FY + +DL+ +SL I V D D +D++G + ++
Sbjct: 83 KTLNPEFNEEF-FYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGIS 131
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 113/223 (50%), Gaps = 15/223 (6%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLR-PHISRD 58
+T+NP F+E+ TF V ++L+ ++L + V D D++ HD +GE + P+N + H++ +
Sbjct: 63 KTLNPVFNEQFTF-KVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 121
Query: 59 LCLNLCKHYPVPRXXXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGF 118
R + G I +L + L V +++ NL MD G
Sbjct: 122 W-----------RDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGL 170
Query: 119 SDPFIKLYLKPD-LHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 177
SDP++K++L + +K KT +K TLNP +NE F+ E ++ K +V+TV D D
Sbjct: 171 SDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKI 230
Query: 178 KSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 220
ND +G + + NS G LRHW DM+ P H L ++
Sbjct: 231 GKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 273
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 77/135 (57%), Gaps = 3/135 (2%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
GK+ +L + + L+V +I+ L +D G SDP++K++L PD K+K++T V KT
Sbjct: 6 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-KKKKFETKVHRKT 64
Query: 145 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVD 202
LNP+FNE+F + +EL+ +TLV+ V+D D +D +G ++ N+ G W D
Sbjct: 65 LNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 124
Query: 203 MMKYPDHKHEGIHNL 217
+ + E + ++
Sbjct: 125 LQSAEKEEQEKLGDI 139
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 76/135 (56%), Gaps = 1/135 (0%)
Query: 84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLK-PDLHKRKYKTGVKW 142
G++ L+LC++ ++IVN+IK NL MD G SDP++K++L D K KT K
Sbjct: 2 RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKK 61
Query: 143 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVD 202
+ LNPIFNE FA + +L + T++ITV DKD ND +G + L S ++HW D
Sbjct: 62 RNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKD 121
Query: 203 MMKYPDHKHEGIHNL 217
M+ P H L
Sbjct: 122 MIARPRQPVAQWHQL 136
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
GK+ +L + + L+V +I+ L +D G SDP++K++L PD K+K++T V KT
Sbjct: 21 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-KKKKFETKVHRKT 79
Query: 145 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVD 202
LNP+FNE+F + +EL +TLV+ V+D D +D +G ++ N+ G W D
Sbjct: 80 LNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 139
Query: 203 M 203
+
Sbjct: 140 L 140
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 51
+T+NP F+E+ TF V ++L ++L + V D D++ HD +GE + P+N +
Sbjct: 78 KTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
GK+ +L + + L+V +I+ L +D G SDP++K++L PD K+K++T V KT
Sbjct: 21 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-KKKKFETKVHRKT 79
Query: 145 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVD 202
LNP+FNE+F + +EL +TLV+ V+D D +D +G ++ N+ G W D
Sbjct: 80 LNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 139
Query: 203 M 203
+
Sbjct: 140 L 140
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 51
+T+NP F+E+ TF V ++L ++L + V D D++ HD +GE + P+N +
Sbjct: 78 KTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
GK+ +L + + L+V +I+ L +D G SDP++K++L PD K+K++T V KT
Sbjct: 29 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-KKKKFETKVHRKT 87
Query: 145 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVD 202
LNP+FNE+F + +EL +TLV+ V+D D +D +G ++ N+ G W D
Sbjct: 88 LNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 147
Query: 203 M 203
+
Sbjct: 148 L 148
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 51
+T+NP F+E+ TF V ++L ++L + V D D++ HD +GE + P+N +
Sbjct: 86 KTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 136
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 71/121 (58%), Gaps = 3/121 (2%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
GK+ +L + + L+V +I+ L +D G SDP++K++L PD K+K++T V KT
Sbjct: 4 GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-KKKKFETKVHRKT 62
Query: 145 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVD 202
LNP+FNE+F + +EL +TLV+ V+D D +D +G ++ N+ G W D
Sbjct: 63 LNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 122
Query: 203 M 203
+
Sbjct: 123 L 123
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 51
+T+NP F+E+ TF V ++L ++L + V D D++ HD +GE + P+N +
Sbjct: 61 KTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 111
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 99/223 (44%), Gaps = 19/223 (8%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
+T+NP F+E F SV +L+ + LH V D D++ HD +G+ + D
Sbjct: 65 KTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQ-----------VVLDN 112
Query: 60 CLNLCKH---YPVPRXXXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN 116
L L + P+ R G++ +LC+ L V +IK +NL MD
Sbjct: 113 LLELAEQPPDRPLWRDILEGGSEKA-DLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLT 171
Query: 117 GFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 175
GFSDP++K L + + +K KT +K TLNP +NE + + L I V D D
Sbjct: 172 GFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYD 231
Query: 176 YGKSNDYLGCLELCCNSKGDRLR-HWVDMMKYPDHKHEGIHNL 217
N+ +G + + R HW +M+ P E H L
Sbjct: 232 CIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQL 274
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
G+I L + L+V +++ +L DSNGFSDP++K+YL PD K+K++T V KT
Sbjct: 8 GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPD-RKKKFQTKVHRKT 66
Query: 145 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 188
LNPIFNE F + EL+++ L +V+D D +D +G + L
Sbjct: 67 LNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVL 110
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 99/223 (44%), Gaps = 19/223 (8%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
+T+NP F+E F SV +L+ + LH V D D++ HD +G+ + D
Sbjct: 64 KTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQ-----------VVLDN 111
Query: 60 CLNLCKH---YPVPRXXXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN 116
L L + P+ R G++ +LC+ L V +IK +NL MD
Sbjct: 112 LLELAEQPPDRPLWRDILEGGSEKA-DLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLT 170
Query: 117 GFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 175
GFSDP++K L + + +K KT +K TLNP +NE + + L I V D D
Sbjct: 171 GFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYD 230
Query: 176 YGKSNDYLGCLELCCNSKGDRLR-HWVDMMKYPDHKHEGIHNL 217
N+ +G + + R HW +M+ P E H L
Sbjct: 231 CIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQL 273
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 1/104 (0%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
G+I L + L+V +++ +L DSNGFSDP++K+YL PD K+K++T V KT
Sbjct: 7 GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPD-RKKKFQTKVHRKT 65
Query: 145 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 188
LNPIFNE F + EL+++ L +V+D D +D +G + L
Sbjct: 66 LNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVL 109
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVKWK 143
G I +L + L V +++ NL MD G SDP++K++L + +K KT +K
Sbjct: 5 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 64
Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 203
TLNP +NE F+ E ++ K +V+TV D D ND +G + + NS G LRHW DM
Sbjct: 65 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 124
Query: 204 MKYPDHKHEGIHNLSIK 220
+ P H L ++
Sbjct: 125 LANPRRPIAQWHTLQVE 141
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVKWK 143
G I +L + L V +++ NL MD G SDP++K++L + +K KT +K
Sbjct: 4 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 63
Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 203
TLNP +NE F+ E ++ K +V+TV D D ND +G + + NS G LRHW DM
Sbjct: 64 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 123
Query: 204 MKYPDHKHEGIHNLSIK 220
+ P H L ++
Sbjct: 124 LANPRRPIAQWHTLQVE 140
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYL-KPDLHKRKYKTGVKWK 143
G I +L + L V +++ NL MD G SDP++K++L + +K KT +K
Sbjct: 12 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 71
Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 203
TLNP +NE F+ E ++ K +V+TV D D ND +G + + NS G LRHW DM
Sbjct: 72 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 131
Query: 204 MKYPDHKHEGIHNLSIK 220
+ P H L ++
Sbjct: 132 LANPRRPIAQWHTLQVE 148
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 73/129 (56%), Gaps = 15/129 (11%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--------RKY 136
G+I L + + LI+++++ NL+P D+NG+SDPF+K+YL P + +Y
Sbjct: 7 GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 137 KTGVKW--KTLNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLG--CLELCCN 191
K K+ K+LNP +N+ ++ + +L K+TL +TVWD D SND+LG ++L
Sbjct: 65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124
Query: 192 SKGDRLRHW 200
S D W
Sbjct: 125 SHLDNTPRW 133
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY-GHDFLGEARFPLN 49
+++NPE+++ + + S+S L ++L + V D D++ +DFLGE L+
Sbjct: 73 KSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLS 122
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 4/110 (3%)
Query: 83 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVK 141
+ G+I+L + +K L V + NLIPMD NG SDP++KL L PD ++ K KT
Sbjct: 4 KRGRIYLKAEVTDEK--LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTI 61
Query: 142 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCN 191
TLNP +NE F + K ++ ++ L + +WD D ND++G L +
Sbjct: 62 RSTLNPQWNESFTFKLKPSDKDRR-LSVEIWDWDRTTRNDFMGSLSFGVS 110
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 4/110 (3%)
Query: 83 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVK 141
+ G+I+L + +K L V + NLIPMD NG SDP++KL L PD ++ K KT
Sbjct: 3 KRGRIYLKAEVTDEK--LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTI 60
Query: 142 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCN 191
TLNP +NE F + K ++ ++ L + +WD D ND++G L +
Sbjct: 61 RSTLNPQWNESFTFKLKPSDKDRR-LSVEIWDWDRTTRNDFMGSLSFGVS 109
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 7/113 (6%)
Query: 83 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD---LHKRKYKTG 139
+ G++ L + T + V + + NLIPMD NG SDP++KL L PD L K+K +T
Sbjct: 6 RRGRLQLEIRAPTADE-IHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRT- 63
Query: 140 VKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS 192
VK TLNP++NE F K ++ ++ L + VWD D ND++G + +
Sbjct: 64 VK-ATLNPVWNETFVFNLKPGDVERR-LSVEVWDWDRTSRNDFMGAMSFGVSE 114
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 67.0 bits (162), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 4/107 (3%)
Query: 83 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVK 141
+ G+I++ + LIV + NL+PMD NG SDP++KL L PD + K KT
Sbjct: 159 RRGRIYIQA--HIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTI 216
Query: 142 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 188
+LNP +NE F + K ++ ++ L + +WD D ND++G L
Sbjct: 217 KSSLNPEWNETFRFQLKESDKDRR-LSVEIWDWDLTSRNDFMGSLSF 262
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Query: 83 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVK 141
+ G+I+L + +K L V + NLIP D NG SDP++KL L PD ++ K KT
Sbjct: 5 KRGRIYLKAEVADEK--LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTI 62
Query: 142 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCN 191
TLNP +NE F + K ++ ++ L + +WD D ND+ G L +
Sbjct: 63 RSTLNPQWNESFTFKLKPSDKDRR-LSVEIWDWDRTTRNDFXGSLSFGVS 111
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Query: 83 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVK 141
+ G+I++ + LIV + NL+PMD NG SDP++KL L PD + K KT
Sbjct: 18 RRGRIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTI 75
Query: 142 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCN 191
+LNP +NE F + K ++ ++ L + +WD D ND++G L +
Sbjct: 76 KCSLNPEWNETFRFQLKESDKDRR-LSVEIWDWDLTSRNDFMGSLSFGIS 124
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWK 143
G+I LT+ S+++ LIV + C NLI +G SDP++++YL PD + + KT V K
Sbjct: 11 GQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKK 69
Query: 144 TLNPIFNEEFAIETKITELSKQTLVITV 171
TLNP+F++ F + E+ ++TL + V
Sbjct: 70 TLNPVFDQSFDFSVSLPEVQRRTLDVAV 97
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 143
G++ ++LC+ + L V ++K +L D +G SDP++K+ L + K KT VK
Sbjct: 17 GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC 76
Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 203
T N +FNE F + L + ++ V D + G N+ +G L L ++G HW ++
Sbjct: 77 TPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEI 136
Query: 204 MKYPDHKHEGIHNL 217
+P + H L
Sbjct: 137 CDFPRRQIAKWHML 150
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 60/108 (55%), Gaps = 2/108 (1%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
G+I ++ ++ ++ L V ++K L D +G SDPF+K+YL PD K K +T VK K
Sbjct: 13 GRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPD-KKHKLETKVKRKN 71
Query: 145 LNPIFNEEFAIETKITE-LSKQTLVITVWDKDYGKSNDYLGCLELCCN 191
LNP +NE F E E + ++ L + V D D ND +G + + N
Sbjct: 72 LNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLN 119
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 51
+ +NP ++E F + + L++ VLD D++ +D +GE PLN++
Sbjct: 70 KNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKV 121
>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
pdb|3FDW|B Chain B, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
Length = 148
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKR-KYKTGVKW 142
G+I +L + + ++L+V++ +C L D + S+P++K YL PD ++ K KT +K
Sbjct: 10 GRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR 69
Query: 143 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS 192
T+NP+++E E + L+++TL +VW N +LG E+ +S
Sbjct: 70 DTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDS 119
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 143
G + +L + L +I+ L PMDSNG +DP++KL+L P K K +T
Sbjct: 14 GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN 73
Query: 144 TLNPIFNEEFAIETKITE--LSKQTLVITVWDKDYGKSNDYLG 184
T NP++NE ITE + ++TL I+V D+D N+++G
Sbjct: 74 TRNPVWNETLQYHG-ITEEDMQRKTLRISVCDEDKFGHNEFIG 115
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 43/64 (67%), Gaps = 3/64 (4%)
Query: 2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLC 60
T NP ++E L ++ ++E D+ ++L I V D+DK+GH +F+GE RF L +L+ + ++
Sbjct: 74 TRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKN-- 131
Query: 61 LNLC 64
N+C
Sbjct: 132 FNIC 135
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 143
G + +L + L +I+ L PMDSNG +DP++KL+L P K K +T
Sbjct: 16 GALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRN 75
Query: 144 TLNPIFNEEFAIETKITE--LSKQTLVITVWDKDYGKSNDYLG 184
T NP++NE ITE + ++TL I+V D+D N+++G
Sbjct: 76 TRNPVWNETLQYHG-ITEEDMQRKTLRISVCDEDKFGHNEFIG 117
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 43/64 (67%), Gaps = 3/64 (4%)
Query: 2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLC 60
T NP ++E L ++ ++E D+ ++L I V D+DK+GH +F+GE RF L +L+ + ++
Sbjct: 76 TRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKN-- 133
Query: 61 LNLC 64
N+C
Sbjct: 134 FNIC 137
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 82 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-------GFSDPFIKLYLKPDLHKR 134
+Q G + + + L V +I+ +L P S+ S+P++K+ L PD K
Sbjct: 10 YQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPD-QKN 68
Query: 135 KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 175
+TGVK KT P+F E + E E ++TL++TV D D
Sbjct: 69 SKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFD 109
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 87 IFLTLCFSTKKRALIVNLIKCTNLIPMDSNGF-SDPFIKLYLKPDLHKRKYKTGVKWKTL 145
+F +L ++ +++A +VN+ + L MD SDP+IK+ + P+ K K KT V KTL
Sbjct: 11 LFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE-KKHKVKTRVLRKTL 69
Query: 146 NPIFNEEFAI-ETKITELSKQTLVITVWDKDYGKSNDYLG 184
+P F+E F T++ + L T+ D +D +G
Sbjct: 70 DPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIG 109
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLN 49
+T++P F E TFY + T + +LH +L D++ D +GE PL+
Sbjct: 67 KTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLS 116
>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
pdb|2B3R|B Chain B, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
Length = 134
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 143
G + L S + L + ++ +L+ D +P++K YL PD HK K KT + K
Sbjct: 7 GSGAVKLSVSYRNGTLFIMVMHIKDLVTEDGAD-PNPYVKTYLLPDTHKTSKRKTKISRK 65
Query: 144 TLNPIFNEEFAIETKITE-LSKQTLVITVWDKDYGKSNDYLGCLEL 188
T NP FNE E L ++ L ++V + + N +LG + L
Sbjct: 66 TRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITL 111
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 4/106 (3%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWK 143
G++ + L F LIV ++ +L + +P++K+Y PD K K +T K
Sbjct: 5 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 64
Query: 144 TLNPIFNEEFAIE-TKITELSKQTLVITVWDKDYGK--SNDYLGCL 186
TL P +N+ F E ++ L IT+WD+ + +++LG +
Sbjct: 65 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEI 110
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
L V ++K +L+ D +G SDPF L L D + +T +K LNP +N+ F K
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGND----RLQTHTVYKNLNPEWNKVFTFPIKD 70
Query: 160 TELSKQTLVITVWDKDYGKSNDYLG 184
L +TV+D+D K D+LG
Sbjct: 71 IH---DVLEVTVFDEDGDKPPDFLG 92
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
L+V++I+ T L NG S+P+ ++ + + Y T TLNP +N F + I
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEI----SMGSQSYTTRTIQDTLNPKWN--FNCQFFI 442
Query: 160 TELSKQTLVITVWDKDYGKSNDYLGCLEL 188
+L + L +T++D+D +D+LG E+
Sbjct: 443 KDLYQDVLCLTLFDRDQFSPDDFLGRTEI 471
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 96 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRK---YKTGVKWKTLNPIFNEE 152
+ R L V ++ +L D G SDP++KL L R+ +T KTLNP +NEE
Sbjct: 19 ESRILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEE 78
Query: 153 FAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCN 191
F S L+ V+D++ +D+LG +++ +
Sbjct: 79 FYFRVNP---SNHRLLFEVFDENRLTRDDFLGQVDVPLS 114
>pdb|3NSJ|A Chain A, The X-Ray Crystal Structure Of Lymphocyte Perforin
Length = 540
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 126 YLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG 184
YLK ++++TGV W NP + ++ E + + L + VWD DYG +D LG
Sbjct: 417 YLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLS-TGGPLRVQVWDADYGWDDDLLG 474
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 86 KIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKT 144
++ + L F LIV ++ +L + +P++K+Y PD K K +T KT
Sbjct: 9 QLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKT 68
Query: 145 LNPIFNEEFAIE-TKITELSKQTLVITVWDKDYGK--SNDYLGCL 186
L P +N+ F E ++ L IT+WD+ + +++LG +
Sbjct: 69 LEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEI 113
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 102 VNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE 156
+ ++ L D G SDP++ + + K K +T + LNP++ E F E
Sbjct: 21 ITVVCAQGLQAKDKTGSSDPYVTVQV----GKTKKRTKTIYGNLNPVWEENFHFE 71
>pdb|2Q3X|A Chain A, The Rim1alpha C2b Domain
pdb|2Q3X|B Chain B, The Rim1alpha C2b Domain
Length = 171
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
Query: 96 KKRALIVNLIKCTNLIPM-DSNGFSDPFIKLYL-KPDLHKRKYKTGVKWKTLNPIFNEEF 153
KK L V +I+ +L S P++K+YL + K KT + KTL+P++ +
Sbjct: 28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSL 87
Query: 154 AIETKITELSKQTLVITVWDKDYGKSN 180
+ + L + VW DYG+ +
Sbjct: 88 VFD---ESPQGKVLQVIVWG-DYGRXD 110
>pdb|3IFG|A Chain A, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|B Chain B, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|C Chain C, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|D Chain D, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|E Chain E, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|F Chain F, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|G Chain G, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|H Chain H, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|I Chain I, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|J Chain J, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|K Chain K, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|L Chain L, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|M Chain M, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|N Chain N, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|O Chain O, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFG|P Chain P, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 1 Of 2
pdb|3IFH|Q Chain Q, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|R Chain R, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|S Chain S, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|T Chain T, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|U Chain U, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|V Chain V, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|W Chain W, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|X Chain X, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|Y Chain Y, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|Z Chain Z, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|1 Chain 1, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|2 Chain 2, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|3 Chain 3, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|4 Chain 4, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|5 Chain 5, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
pdb|3IFH|6 Chain 6, Crystal Structure Of Succinate-Semialdehyde Dehydrogenase
From Burkholderia Pseudomallei, Part 2 Of 2
Length = 484
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Query: 115 SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQT---LVITV 171
+GF +P + +KPD+ K +T + L P+F FA E ++ L+ T L +
Sbjct: 366 GHGFFEPTVLTGVKPDMDVAKEET---FGPLAPLFR--FASEEELVRLANDTEFGLAAYL 420
Query: 172 WDKDYGK 178
+ +D G+
Sbjct: 421 YSRDIGR 427
>pdb|3AIU|A Chain A, Crystal Structure Of Beta-Glucosidase In Rye
pdb|3AIV|A Chain A, Crystal Structure Of Beta-Glucosidase In Rye Complexed
With An Aglycone Dimboa
pdb|3AIW|A Chain A, Crystal Structure Of Beta-Glucosidase In Rye Complexed
With 2-Deoxy-2- Fluoroglucoside And Dinitrophenol
Length = 564
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 180 NDYLGCLELCCNSKGDRLRHW 200
NDY ELC S GDR+++W
Sbjct: 211 NDYKYFAELCFQSFGDRVKNW 231
>pdb|1CBG|A Chain A, The Crystal Structure Of A Cyanogenic Beta-Glucosidase
From White Clover (Trifolium Repens L.), A Family 1
Glycosyl-Hydrolase
Length = 490
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 180 NDYLGCLELCCNSKGDRLRHWVDM 203
+D+ ELC GDR++HW+ +
Sbjct: 158 DDFRDYAELCFKEFGDRVKHWITL 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,890,302
Number of Sequences: 62578
Number of extensions: 268662
Number of successful extensions: 488
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 58
length of query: 224
length of database: 14,973,337
effective HSP length: 95
effective length of query: 129
effective length of database: 9,028,427
effective search space: 1164667083
effective search space used: 1164667083
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)