Query psy12137
Match_columns 224
No_of_seqs 141 out of 1840
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 19:39:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12137.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12137hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1028|consensus 100.0 2.1E-41 4.6E-46 283.0 20.7 208 1-219 211-420 (421)
2 cd08407 C2B_Synaptotagmin-13 C 100.0 5.7E-35 1.2E-39 209.1 15.2 135 84-218 1-138 (138)
3 cd08406 C2B_Synaptotagmin-12 C 100.0 4.4E-34 9.5E-39 204.6 15.6 135 84-218 1-136 (136)
4 cd08692 C2B_Tac2-N C2 domain s 100.0 1.6E-33 3.5E-38 198.9 15.7 132 85-217 1-135 (135)
5 cd08408 C2B_Synaptotagmin-14_1 100.0 4.5E-32 9.7E-37 195.1 15.5 134 85-218 2-138 (138)
6 cd08409 C2B_Synaptotagmin-15 C 100.0 2.3E-31 5E-36 191.6 15.1 133 84-217 1-136 (137)
7 cd08402 C2B_Synaptotagmin-1 C2 100.0 1.1E-30 2.3E-35 188.3 15.9 135 84-218 1-136 (136)
8 cd08410 C2B_Synaptotagmin-17 C 100.0 2.8E-30 6.1E-35 185.6 15.0 133 85-217 1-135 (135)
9 cd08384 C2B_Rabphilin_Doc2 C2 100.0 7.3E-30 1.6E-34 183.3 14.7 132 86-217 1-133 (133)
10 cd08405 C2B_Synaptotagmin-7 C2 100.0 8.4E-30 1.8E-34 183.6 15.0 135 84-218 1-136 (136)
11 cd08404 C2B_Synaptotagmin-4 C2 100.0 1.2E-29 2.6E-34 182.8 15.7 135 84-218 1-136 (136)
12 cd08403 C2B_Synaptotagmin-3-5- 100.0 1.1E-29 2.3E-34 182.6 15.3 133 85-217 1-134 (134)
13 cd08677 C2A_Synaptotagmin-13 C 100.0 1.6E-29 3.4E-34 174.5 13.6 116 85-203 1-118 (118)
14 cd00276 C2B_Synaptotagmin C2 d 100.0 3.2E-28 6.8E-33 175.1 15.6 133 85-217 1-134 (134)
15 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.9 2.3E-26 5E-31 169.7 15.4 135 84-218 1-162 (162)
16 cd08393 C2A_SLP-1_2 C2 domain 99.9 3E-26 6.4E-31 162.6 14.4 123 84-218 1-125 (125)
17 cd04029 C2A_SLP-4_5 C2 domain 99.9 5.6E-26 1.2E-30 161.0 15.5 123 84-218 1-125 (125)
18 cd08392 C2A_SLP-3 C2 domain fi 99.9 6.5E-26 1.4E-30 161.0 15.2 125 84-217 1-127 (128)
19 cd08680 C2_Kibra C2 domain fou 99.9 5.3E-26 1.1E-30 160.2 13.2 117 86-202 2-123 (124)
20 cd08381 C2B_PI3K_class_II C2 d 99.9 2.3E-25 5E-30 157.2 14.6 108 84-194 1-110 (122)
21 cd04028 C2B_RIM1alpha C2 domai 99.9 6.4E-25 1.4E-29 158.3 16.3 125 81-222 14-141 (146)
22 cd08388 C2A_Synaptotagmin-4-11 99.9 1.3E-24 2.9E-29 154.6 16.4 126 83-219 1-128 (128)
23 cd08389 C2A_Synaptotagmin-14_1 99.9 1.3E-24 2.7E-29 153.9 14.3 122 84-219 2-124 (124)
24 cd08387 C2A_Synaptotagmin-8 C2 99.9 4.2E-24 9.1E-29 151.5 15.2 122 84-218 2-123 (124)
25 cd08385 C2A_Synaptotagmin-1-5- 99.9 3.2E-24 6.9E-29 152.2 13.6 119 84-203 2-122 (124)
26 cd08521 C2A_SLP C2 domain firs 99.9 1.3E-23 2.8E-28 148.8 14.5 109 85-193 1-111 (123)
27 cd04030 C2C_KIAA1228 C2 domain 99.9 2.3E-23 5E-28 148.3 15.8 123 84-218 2-127 (127)
28 cd08685 C2_RGS-like C2 domain 99.9 1.8E-23 4E-28 146.7 13.6 117 85-217 1-119 (119)
29 cd08386 C2A_Synaptotagmin-7 C2 99.9 4.2E-23 9.2E-28 146.6 14.9 123 84-219 2-125 (125)
30 cd04031 C2A_RIM1alpha C2 domai 99.9 4.7E-23 1E-27 146.3 13.1 109 84-192 2-112 (125)
31 cd08390 C2A_Synaptotagmin-15-1 99.9 1.5E-22 3.2E-27 143.4 15.4 122 85-219 1-123 (123)
32 KOG1013|consensus 99.9 6.3E-24 1.4E-28 166.0 8.5 216 1-220 139-356 (362)
33 cd08395 C2C_Munc13 C2 domain t 99.9 1.1E-21 2.4E-26 137.1 13.8 111 99-222 1-115 (120)
34 KOG0696|consensus 99.9 1.4E-22 3E-27 164.0 8.7 134 71-207 155-290 (683)
35 cd08682 C2_Rab11-FIP_classI C2 99.9 1.5E-21 3.2E-26 138.8 12.5 107 100-220 1-110 (126)
36 KOG2059|consensus 99.9 9.7E-22 2.1E-26 166.6 11.4 193 1-222 47-256 (800)
37 cd04009 C2B_Munc13-like C2 dom 99.9 1.6E-20 3.5E-25 134.6 14.1 109 84-192 2-115 (133)
38 cd04010 C2B_RasA3 C2 domain se 99.9 9.1E-21 2E-25 137.4 12.3 111 99-222 1-125 (148)
39 cd04016 C2_Tollip C2 domain pr 99.9 2.7E-20 5.9E-25 130.4 13.5 86 98-191 2-88 (121)
40 cd04035 C2A_Rabphilin_Doc2 C2 99.8 3.6E-20 7.7E-25 131.1 13.8 112 84-196 1-114 (123)
41 cd08688 C2_KIAA0528-like C2 do 99.8 1.6E-20 3.4E-25 130.3 11.2 107 100-219 1-109 (110)
42 cd04050 C2B_Synaptotagmin-like 99.8 5.1E-20 1.1E-24 126.7 12.2 103 100-221 2-104 (105)
43 cd08379 C2D_MCTP_PRT_plant C2 99.8 6.8E-20 1.5E-24 129.2 12.9 101 100-219 2-111 (126)
44 KOG1028|consensus 99.8 8.3E-20 1.8E-24 153.3 14.6 113 81-194 150-262 (421)
45 cd04026 C2_PKC_alpha_gamma C2 99.8 9.8E-20 2.1E-24 130.3 12.9 107 84-193 1-108 (131)
46 cd04019 C2C_MCTP_PRT_plant C2 99.8 2E-19 4.4E-24 131.0 12.9 89 99-193 1-90 (150)
47 cd08376 C2B_MCTP_PRT C2 domain 99.8 4.8E-19 1E-23 124.1 13.3 89 99-193 1-89 (116)
48 cd04022 C2A_MCTP_PRT_plant C2 99.8 2.5E-19 5.4E-24 127.5 11.9 91 99-193 1-93 (127)
49 cd04041 C2A_fungal C2 domain f 99.8 3.3E-19 7.2E-24 123.8 10.9 94 98-192 1-96 (111)
50 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 1E-18 2.2E-23 123.7 12.5 89 99-193 1-89 (123)
51 cd04039 C2_PSD C2 domain prese 99.8 7.8E-19 1.7E-23 121.0 11.5 90 98-192 1-94 (108)
52 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 1.5E-18 3.3E-23 122.2 13.1 103 100-220 2-105 (121)
53 cd08375 C2_Intersectin C2 doma 99.8 1.5E-18 3.3E-23 124.5 12.9 111 96-219 13-123 (136)
54 cd04036 C2_cPLA2 C2 domain pre 99.8 1.7E-18 3.7E-23 121.8 12.7 105 100-220 2-106 (119)
55 KOG1030|consensus 99.8 7.5E-19 1.6E-23 126.2 10.6 98 97-201 5-102 (168)
56 cd08675 C2B_RasGAP C2 domain s 99.8 2.9E-18 6.2E-23 123.3 12.5 110 100-222 1-123 (137)
57 cd04011 C2B_Ferlin C2 domain s 99.8 2E-18 4.3E-23 120.0 11.2 105 97-218 3-109 (111)
58 cd04037 C2E_Ferlin C2 domain f 99.8 4.5E-18 9.7E-23 120.4 13.2 117 99-220 1-121 (124)
59 cd04042 C2A_MCTP_PRT C2 domain 99.8 4.6E-18 9.9E-23 120.0 13.2 101 99-205 1-103 (121)
60 cd04018 C2C_Ferlin C2 domain t 99.8 1E-18 2.3E-23 126.9 10.1 107 99-210 1-130 (151)
61 cd08681 C2_fungal_Inn1p-like C 99.8 2.4E-18 5.3E-23 120.8 11.0 101 98-205 1-104 (118)
62 cd08394 C2A_Munc13 C2 domain f 99.8 4.7E-18 1E-22 118.6 12.1 84 97-192 1-84 (127)
63 cd04017 C2D_Ferlin C2 domain f 99.8 8.3E-18 1.8E-22 120.8 13.2 111 98-220 1-118 (135)
64 cd04024 C2A_Synaptotagmin-like 99.8 6E-18 1.3E-22 120.5 12.4 89 98-192 1-91 (128)
65 cd08377 C2C_MCTP_PRT C2 domain 99.8 7E-18 1.5E-22 118.6 12.2 101 98-205 1-101 (119)
66 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 6.8E-18 1.5E-22 119.0 12.1 103 100-219 2-104 (121)
67 cd04038 C2_ArfGAP C2 domain pr 99.8 1.7E-17 3.7E-22 120.0 13.0 112 98-218 2-114 (145)
68 cd08678 C2_C21orf25-like C2 do 99.8 1.5E-17 3.3E-22 118.1 12.6 86 100-192 1-86 (126)
69 cd08378 C2B_MCTP_PRT_plant C2 99.8 1.1E-17 2.3E-22 117.9 10.9 84 99-193 1-84 (121)
70 cd08676 C2A_Munc13-like C2 dom 99.8 7.5E-18 1.6E-22 122.6 10.1 95 93-193 23-142 (153)
71 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.5E-17 3.2E-22 117.3 11.2 88 98-192 1-94 (121)
72 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 3.2E-17 7E-22 117.5 12.8 91 100-193 2-95 (133)
73 cd04027 C2B_Munc13 C2 domain s 99.7 3E-17 6.5E-22 116.7 12.5 100 99-205 2-112 (127)
74 cd04043 C2_Munc13_fungal C2 do 99.7 6.4E-17 1.4E-21 114.9 14.2 91 99-192 2-92 (126)
75 cd08690 C2_Freud-1 C2 domain f 99.7 2.5E-17 5.5E-22 119.7 11.9 106 100-205 4-121 (155)
76 cd04049 C2_putative_Elicitor-r 99.7 4.7E-17 1E-21 115.3 12.4 108 98-221 1-110 (124)
77 cd08400 C2_Ras_p21A1 C2 domain 99.7 6.8E-17 1.5E-21 114.7 13.1 86 98-193 4-90 (126)
78 cd04032 C2_Perforin C2 domain 99.7 3.5E-17 7.5E-22 115.6 11.2 91 96-192 26-116 (127)
79 cd04045 C2C_Tricalbin-like C2 99.7 6.4E-17 1.4E-21 113.7 12.5 110 98-213 1-111 (120)
80 cd04015 C2_plant_PLD C2 domain 99.7 3.4E-17 7.4E-22 120.4 11.5 102 97-206 6-140 (158)
81 cd04014 C2_PKC_epsilon C2 doma 99.7 7.2E-17 1.6E-21 115.6 12.8 89 97-192 3-101 (132)
82 cd04046 C2_Calpain C2 domain p 99.7 6.6E-17 1.4E-21 114.8 10.9 98 98-203 3-100 (126)
83 cd08382 C2_Smurf-like C2 domai 99.7 1.9E-16 4.2E-21 111.9 12.2 86 100-192 2-89 (123)
84 cd08373 C2A_Ferlin C2 domain f 99.7 3.6E-16 7.7E-21 111.2 12.7 95 104-204 2-98 (127)
85 cd08691 C2_NEDL1-like C2 domai 99.7 1E-15 2.2E-20 109.6 14.3 108 99-221 2-123 (137)
86 cd04040 C2D_Tricalbin-like C2 99.7 5.4E-16 1.2E-20 108.3 12.6 105 100-221 1-105 (115)
87 cd08383 C2A_RasGAP C2 domain ( 99.7 5.2E-16 1.1E-20 108.7 10.9 98 100-204 2-99 (117)
88 cd08686 C2_ABR C2 domain in th 99.7 6.5E-16 1.4E-20 106.5 10.7 84 100-192 1-92 (118)
89 cd04051 C2_SRC2_like C2 domain 99.7 7.2E-16 1.6E-20 109.3 10.8 91 99-192 1-94 (125)
90 cd04047 C2B_Copine C2 domain s 99.7 6E-16 1.3E-20 107.2 10.0 91 101-194 3-99 (110)
91 cd04048 C2A_Copine C2 domain f 99.7 3E-15 6.5E-20 105.4 12.8 88 103-192 5-99 (120)
92 cd04044 C2A_Tricalbin-like C2 99.6 5.9E-15 1.3E-19 104.4 12.9 91 98-193 2-93 (124)
93 cd00275 C2_PLC_like C2 domain 99.6 5.8E-15 1.2E-19 105.0 11.2 104 98-205 2-110 (128)
94 cd04013 C2_SynGAP_like C2 doma 99.6 7.5E-15 1.6E-19 105.7 11.7 101 97-221 10-115 (146)
95 cd08374 C2F_Ferlin C2 domain s 99.6 7.7E-15 1.7E-19 103.8 11.2 94 100-194 2-122 (133)
96 cd04021 C2_E3_ubiquitin_ligase 99.6 2.1E-14 4.6E-19 101.7 12.4 86 98-192 2-88 (125)
97 PF00168 C2: C2 domain; Inter 99.6 1.2E-14 2.7E-19 95.5 10.3 85 100-187 1-85 (85)
98 cd08677 C2A_Synaptotagmin-13 C 99.6 2.4E-15 5.1E-20 104.0 5.7 60 1-61 56-116 (118)
99 COG5038 Ca2+-dependent lipid-b 99.6 1.2E-13 2.5E-18 123.9 15.0 104 97-205 1039-1143(1227)
100 COG5038 Ca2+-dependent lipid-b 99.5 2E-13 4.2E-18 122.5 15.6 90 97-192 710-799 (1227)
101 cd04052 C2B_Tricalbin-like C2 99.5 9.5E-14 2.1E-18 96.3 9.7 71 115-192 9-80 (111)
102 cd04016 C2_Tollip C2 domain pr 99.5 6.9E-14 1.5E-18 98.0 8.1 76 2-93 44-121 (121)
103 PLN03008 Phospholipase D delta 99.5 1.8E-13 4E-18 120.6 11.8 84 117-207 75-160 (868)
104 cd08395 C2C_Munc13 C2 domain t 99.5 1.3E-13 2.8E-18 96.5 6.5 65 1-66 47-113 (120)
105 KOG1328|consensus 99.5 4.1E-14 8.9E-19 121.2 4.3 111 82-192 931-1046(1103)
106 PLN03200 cellulose synthase-in 99.4 3.5E-13 7.7E-18 128.6 10.2 100 97-204 1979-2081(2102)
107 cd04042 C2A_MCTP_PRT C2 domain 99.4 6.1E-13 1.3E-17 93.7 8.8 79 1-95 42-121 (121)
108 cd08401 C2A_RasA2_RasA3 C2 dom 99.4 6.6E-13 1.4E-17 93.4 8.3 78 1-93 43-121 (121)
109 cd08682 C2_Rab11-FIP_classI C2 99.4 7E-13 1.5E-17 94.1 8.4 80 1-91 40-125 (126)
110 smart00239 C2 Protein kinase C 99.4 4.3E-12 9.3E-17 85.6 11.6 92 100-194 2-93 (101)
111 cd08393 C2A_SLP-1_2 C2 domain 99.4 4E-13 8.6E-18 95.2 6.2 62 1-63 62-124 (125)
112 cd08684 C2A_Tac2-N C2 domain f 99.4 3.7E-13 8.1E-18 86.1 4.8 100 101-203 2-103 (103)
113 cd08381 C2B_PI3K_class_II C2 d 99.4 5.5E-13 1.2E-17 94.0 6.2 63 1-63 58-121 (122)
114 cd00030 C2 C2 domain. The C2 d 99.4 6.5E-12 1.4E-16 84.4 10.8 89 100-193 1-89 (102)
115 cd08389 C2A_Synaptotagmin-14_1 99.4 8.3E-13 1.8E-17 93.4 6.5 63 2-64 60-123 (124)
116 cd08678 C2_C21orf25-like C2 do 99.4 2.5E-12 5.4E-17 91.2 9.0 82 1-96 40-122 (126)
117 cd04033 C2_NEDD4_NEDD4L C2 dom 99.4 1.6E-12 3.5E-17 93.1 8.1 85 1-94 48-133 (133)
118 cd04029 C2A_SLP-4_5 C2 domain 99.4 7.8E-13 1.7E-17 93.6 6.2 62 1-63 62-124 (125)
119 cd08400 C2_Ras_p21A1 C2 domain 99.4 3.1E-12 6.6E-17 90.7 9.2 82 1-95 42-124 (126)
120 cd04010 C2B_RasA3 C2 domain se 99.4 2E-12 4.4E-17 93.8 7.9 64 1-65 44-122 (148)
121 cd04022 C2A_MCTP_PRT_plant C2 99.4 2.6E-12 5.6E-17 91.3 8.3 81 1-93 41-125 (127)
122 KOG1011|consensus 99.4 7.9E-13 1.7E-17 112.4 6.4 106 97-209 294-410 (1283)
123 cd08373 C2A_Ferlin C2 domain f 99.4 5.1E-12 1.1E-16 89.8 9.7 84 1-97 35-119 (127)
124 cd04036 C2_cPLA2 C2 domain pre 99.4 3.5E-12 7.5E-17 89.6 8.2 74 1-94 44-118 (119)
125 cd08376 C2B_MCTP_PRT C2 domain 99.4 3.6E-12 7.8E-17 89.1 8.1 74 1-94 41-115 (116)
126 cd08680 C2_Kibra C2 domain fou 99.4 1.5E-12 3.2E-17 91.8 5.8 54 1-55 61-115 (124)
127 KOG0905|consensus 99.4 1.6E-12 3.4E-17 116.5 7.1 111 82-194 1510-1622(1639)
128 cd08378 C2B_MCTP_PRT_plant C2 99.3 5.4E-12 1.2E-16 88.8 8.3 83 1-93 37-119 (121)
129 cd08392 C2A_SLP-3 C2 domain fi 99.3 2E-12 4.4E-17 91.8 6.2 54 1-55 62-116 (128)
130 cd08388 C2A_Synaptotagmin-4-11 99.3 2.7E-12 5.9E-17 91.2 6.4 64 1-64 61-127 (128)
131 cd04019 C2C_MCTP_PRT_plant C2 99.3 9.1E-12 2E-16 90.8 9.0 94 2-100 43-138 (150)
132 cd08681 C2_fungal_Inn1p-like C 99.3 7.4E-12 1.6E-16 87.7 7.5 75 2-93 44-118 (118)
133 cd08387 C2A_Synaptotagmin-8 C2 99.3 4.1E-12 8.8E-17 89.9 6.2 62 1-63 60-122 (124)
134 cd08375 C2_Intersectin C2 doma 99.3 9.4E-12 2E-16 89.3 7.9 79 1-93 56-135 (136)
135 PLN02223 phosphoinositide phos 99.3 2.8E-11 6.1E-16 102.8 11.8 109 98-209 409-523 (537)
136 cd04025 C2B_RasA1_RasA4 C2 dom 99.3 1.5E-11 3.2E-16 86.9 8.5 81 1-91 41-122 (123)
137 cd08385 C2A_Synaptotagmin-1-5- 99.3 6E-12 1.3E-16 89.0 6.2 63 1-64 60-123 (124)
138 cd04052 C2B_Tricalbin-like C2 99.3 1E-11 2.3E-16 86.0 6.9 75 1-95 34-110 (111)
139 cd04028 C2B_RIM1alpha C2 domai 99.3 9.3E-12 2E-16 89.9 6.5 61 1-65 76-138 (146)
140 cd08690 C2_Freud-1 C2 domain f 99.3 2E-11 4.4E-16 88.9 8.3 80 1-94 50-137 (155)
141 cd08386 C2A_Synaptotagmin-7 C2 99.3 9.6E-12 2.1E-16 88.1 6.4 64 1-64 60-124 (125)
142 KOG1327|consensus 99.3 5.7E-11 1.2E-15 100.2 11.9 174 1-193 50-234 (529)
143 cd08390 C2A_Synaptotagmin-15-1 99.3 9E-12 1.9E-16 88.0 6.1 63 1-64 59-122 (123)
144 cd04044 C2A_Tricalbin-like C2 99.3 2.3E-11 4.9E-16 86.0 7.7 77 1-95 46-124 (124)
145 cd08391 C2A_C2C_Synaptotagmin_ 99.3 2E-11 4.4E-16 85.8 7.3 72 1-92 48-120 (121)
146 cd04015 C2_plant_PLD C2 domain 99.3 4.2E-11 9.2E-16 88.1 8.9 79 1-93 79-157 (158)
147 cd04024 C2A_Synaptotagmin-like 99.2 2.8E-11 6.1E-16 86.0 7.7 80 1-92 44-127 (128)
148 cd04014 C2_PKC_epsilon C2 doma 99.2 4.3E-11 9.3E-16 85.6 8.4 72 1-95 56-130 (132)
149 KOG1030|consensus 99.2 8.9E-12 1.9E-16 89.9 4.7 51 1-55 47-98 (168)
150 cd08379 C2D_MCTP_PRT_plant C2 99.2 3.1E-11 6.7E-16 85.2 7.4 61 1-65 44-111 (126)
151 cd08521 C2A_SLP C2 domain firs 99.2 2.1E-11 4.5E-16 86.0 6.1 60 1-61 61-121 (123)
152 PLN02952 phosphoinositide phos 99.2 1.4E-10 3.1E-15 100.4 11.8 111 98-211 470-587 (599)
153 cd04031 C2A_RIM1alpha C2 domai 99.2 3.3E-11 7.1E-16 85.3 6.3 51 1-51 62-113 (125)
154 cd04043 C2_Munc13_fungal C2 do 99.2 8.4E-11 1.8E-15 83.3 8.0 74 1-95 45-122 (126)
155 PLN02230 phosphoinositide phos 99.2 1.6E-10 3.4E-15 100.1 11.1 108 98-208 469-583 (598)
156 cd04054 C2A_Rasal1_RasA4 C2 do 99.2 1.1E-10 2.4E-15 82.1 8.1 77 1-92 42-120 (121)
157 cd04030 C2C_KIAA1228 C2 domain 99.2 5.4E-11 1.2E-15 84.4 6.5 62 1-63 62-126 (127)
158 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.2 4.8E-11 1E-15 88.2 6.2 64 1-64 73-137 (162)
159 cd08688 C2_KIAA0528-like C2 do 99.2 5.3E-11 1.1E-15 82.4 5.9 53 1-54 41-95 (110)
160 PLN02222 phosphoinositide phos 99.2 3.6E-10 7.8E-15 97.7 11.7 108 98-208 452-566 (581)
161 KOG2059|consensus 99.1 1.1E-10 2.4E-15 100.2 7.7 100 98-204 5-106 (800)
162 KOG1031|consensus 99.1 1.5E-10 3.2E-15 97.8 8.0 116 98-219 3-120 (1169)
163 cd08377 C2C_MCTP_PRT C2 domain 99.1 3.5E-10 7.6E-15 79.3 8.9 76 1-93 42-118 (119)
164 cd08407 C2B_Synaptotagmin-13 C 99.1 5.8E-11 1.3E-15 85.1 4.9 49 1-50 63-112 (138)
165 KOG1326|consensus 99.1 6.1E-11 1.3E-15 105.1 5.6 123 97-220 845-1004(1105)
166 cd04039 C2_PSD C2 domain prese 99.1 9.1E-11 2E-15 80.8 5.3 53 1-55 46-99 (108)
167 cd08685 C2_RGS-like C2 domain 99.1 9.6E-11 2.1E-15 82.1 5.3 55 1-57 57-113 (119)
168 KOG0169|consensus 99.1 2.3E-10 4.9E-15 99.5 8.5 100 99-200 617-722 (746)
169 cd08394 C2A_Munc13 C2 domain f 99.1 1.7E-10 3.8E-15 80.7 6.3 51 2-56 40-90 (127)
170 cd04041 C2A_fungal C2 domain f 99.1 1.2E-10 2.5E-15 80.8 5.2 54 1-55 46-101 (111)
171 cd04027 C2B_Munc13 C2 domain s 99.1 4.1E-10 8.9E-15 79.9 7.8 74 1-91 42-127 (127)
172 cd08406 C2B_Synaptotagmin-12 C 99.1 1.4E-10 3E-15 83.1 5.4 49 1-50 61-110 (136)
173 PLN02228 Phosphoinositide phos 99.1 9.7E-10 2.1E-14 94.8 11.3 109 99-210 432-548 (567)
174 cd04046 C2_Calpain C2 domain p 99.1 8.1E-10 1.8E-14 78.3 9.1 79 1-94 44-122 (126)
175 PLN03008 Phospholipase D delta 99.1 3.5E-10 7.6E-15 100.2 8.2 81 1-95 98-178 (868)
176 cd08382 C2_Smurf-like C2 domai 99.1 7.1E-10 1.5E-14 78.3 8.3 77 1-91 42-122 (123)
177 cd04035 C2A_Rabphilin_Doc2 C2 99.1 3.5E-10 7.7E-15 79.8 6.0 61 1-62 61-122 (123)
178 cd08404 C2B_Synaptotagmin-4 C2 99.1 1.7E-10 3.6E-15 83.0 4.2 60 1-63 61-121 (136)
179 cd04048 C2A_Copine C2 domain f 99.1 2.8E-10 6.1E-15 80.0 5.2 60 1-63 48-112 (120)
180 cd04017 C2D_Ferlin C2 domain f 99.1 8E-10 1.7E-14 79.3 7.6 81 1-95 42-133 (135)
181 cd08409 C2B_Synaptotagmin-15 C 99.0 2E-10 4.2E-15 82.6 4.2 62 1-63 60-122 (137)
182 cd04011 C2B_Ferlin C2 domain s 99.0 3.7E-10 8.1E-15 78.2 5.3 55 1-55 41-97 (111)
183 cd08675 C2B_RasGAP C2 domain s 99.0 8.8E-10 1.9E-14 79.2 7.2 64 1-65 43-120 (137)
184 PLN02270 phospholipase D alpha 99.0 1.6E-09 3.5E-14 96.0 9.9 106 97-210 7-134 (808)
185 cd08408 C2B_Synaptotagmin-14_1 99.0 4.3E-10 9.4E-15 80.9 5.2 50 1-51 62-112 (138)
186 cd04013 C2_SynGAP_like C2 doma 99.0 2.3E-09 4.9E-14 77.4 8.7 88 1-95 48-140 (146)
187 cd08405 C2B_Synaptotagmin-7 C2 99.0 3E-10 6.5E-15 81.6 4.1 50 1-51 61-111 (136)
188 KOG1264|consensus 99.0 5.5E-09 1.2E-13 91.3 12.2 93 97-192 1064-1159(1267)
189 cd08384 C2B_Rabphilin_Doc2 C2 99.0 3.7E-10 8.1E-15 80.8 4.4 49 1-50 59-108 (133)
190 cd04040 C2D_Tricalbin-like C2 99.0 9.6E-10 2.1E-14 76.6 6.2 62 1-65 41-103 (115)
191 cd04051 C2_SRC2_like C2 domain 99.0 1.1E-09 2.4E-14 77.5 6.4 54 2-56 44-100 (125)
192 cd08383 C2A_RasGAP C2 domain ( 99.0 2E-09 4.2E-14 75.2 7.6 77 3-93 40-117 (117)
193 cd04009 C2B_Munc13-like C2 dom 99.0 8.8E-10 1.9E-14 78.9 5.5 51 1-52 64-117 (133)
194 cd04049 C2_putative_Elicitor-r 99.0 1.2E-09 2.5E-14 77.2 5.9 64 1-65 43-108 (124)
195 cd08402 C2B_Synaptotagmin-1 C2 99.0 8.9E-10 1.9E-14 79.2 5.3 50 1-51 61-111 (136)
196 cd08691 C2_NEDL1-like C2 domai 99.0 3.5E-09 7.6E-14 75.9 8.0 78 1-91 54-136 (137)
197 cd04018 C2C_Ferlin C2 domain t 99.0 1.4E-09 3.1E-14 79.1 5.8 52 1-54 55-107 (151)
198 cd04032 C2_Perforin C2 domain 99.0 1.7E-09 3.7E-14 76.4 6.0 50 1-52 68-118 (127)
199 cd08403 C2B_Synaptotagmin-3-5- 98.9 8.2E-10 1.8E-14 79.1 4.3 48 1-49 60-108 (134)
200 cd04038 C2_ArfGAP C2 domain pr 98.9 4.5E-09 9.8E-14 76.1 8.0 51 1-55 42-93 (145)
201 cd04021 C2_E3_ubiquitin_ligase 98.9 4E-09 8.6E-14 74.6 7.5 50 1-55 43-93 (125)
202 cd04050 C2B_Synaptotagmin-like 98.9 2E-09 4.3E-14 73.8 5.7 50 1-55 41-90 (105)
203 cd08410 C2B_Synaptotagmin-17 C 98.9 1.6E-09 3.5E-14 77.7 5.1 47 1-48 60-107 (135)
204 cd04037 C2E_Ferlin C2 domain f 98.9 2.7E-09 5.9E-14 75.3 6.1 50 1-53 43-93 (124)
205 cd08689 C2_fungal_Pkc1p C2 dom 98.9 1.6E-08 3.4E-13 67.8 8.3 82 100-193 1-86 (109)
206 cd00276 C2B_Synaptotagmin C2 d 98.9 2.1E-09 4.6E-14 76.9 4.3 61 1-64 60-121 (134)
207 cd08676 C2A_Munc13-like C2 dom 98.9 4.5E-09 9.7E-14 76.6 5.7 54 1-61 98-151 (153)
208 cd04045 C2C_Tricalbin-like C2 98.9 6.1E-09 1.3E-13 73.1 6.1 50 1-54 43-93 (120)
209 cd04026 C2_PKC_alpha_gamma C2 98.8 6.5E-09 1.4E-13 74.1 6.0 60 1-63 59-119 (131)
210 cd04047 C2B_Copine C2 domain s 98.8 6.6E-09 1.4E-13 71.8 5.2 52 1-56 47-103 (110)
211 KOG1326|consensus 98.8 6.7E-09 1.4E-13 92.5 6.1 88 99-192 614-703 (1105)
212 KOG0696|consensus 98.8 2.7E-09 5.8E-14 87.6 3.3 51 1-53 226-277 (683)
213 KOG1328|consensus 98.8 1E-09 2.2E-14 94.8 0.7 111 97-209 113-287 (1103)
214 cd08686 C2_ABR C2 domain in th 98.8 2.1E-08 4.6E-13 69.3 7.1 45 1-50 40-92 (118)
215 cd08692 C2B_Tac2-N C2 domain s 98.8 9.9E-09 2.1E-13 72.8 4.6 49 1-51 60-110 (135)
216 KOG1013|consensus 98.7 1.2E-09 2.5E-14 86.5 -2.6 114 79-192 74-189 (362)
217 cd08374 C2F_Ferlin C2 domain s 98.6 7.8E-08 1.7E-12 68.2 6.0 53 1-54 48-124 (133)
218 cd00275 C2_PLC_like C2 domain 98.6 1.6E-07 3.4E-12 66.5 7.5 73 3-93 54-127 (128)
219 KOG2060|consensus 98.6 2.3E-08 5E-13 80.6 3.4 124 82-221 255-381 (405)
220 PLN03200 cellulose synthase-in 98.6 6.9E-08 1.5E-12 93.4 6.6 77 1-94 2020-2100(2102)
221 cd08683 C2_C2cd3 C2 domain fou 98.6 1.7E-07 3.7E-12 64.9 6.3 107 100-217 1-143 (143)
222 KOG1011|consensus 98.5 2.9E-06 6.2E-11 73.3 11.7 128 79-219 1102-1237(1283)
223 PLN02223 phosphoinositide phos 98.4 3E-07 6.6E-12 78.6 4.8 51 1-54 460-511 (537)
224 cd00030 C2 C2 domain. The C2 d 98.4 1.1E-06 2.3E-11 58.6 5.8 48 2-52 42-90 (102)
225 smart00239 C2 Protein kinase C 98.4 1.1E-06 2.3E-11 58.8 5.7 50 2-54 45-95 (101)
226 PF00168 C2: C2 domain; Inter 98.3 1.2E-06 2.7E-11 56.9 4.3 42 1-45 43-85 (85)
227 PLN02952 phosphoinositide phos 98.3 3.4E-06 7.5E-11 73.7 8.0 52 1-55 522-574 (599)
228 KOG0169|consensus 98.2 3.4E-06 7.4E-11 74.0 7.2 51 1-54 667-718 (746)
229 PLN02352 phospholipase D epsil 98.2 5.4E-06 1.2E-10 73.8 8.3 98 97-208 9-115 (758)
230 PLN02230 phosphoinositide phos 98.2 1.7E-06 3.7E-11 75.5 4.6 51 1-54 521-572 (598)
231 cd08684 C2A_Tac2-N C2 domain f 98.1 9.2E-07 2E-11 57.0 0.7 48 2-52 45-93 (103)
232 PLN02222 phosphoinositide phos 98.0 5.4E-06 1.2E-10 72.2 4.7 51 1-54 504-555 (581)
233 KOG1031|consensus 98.0 1.2E-05 2.6E-10 68.8 5.0 84 1-92 45-134 (1169)
234 PLN02228 Phosphoinositide phos 97.9 3.9E-05 8.5E-10 66.8 7.9 50 1-53 483-534 (567)
235 KOG1264|consensus 97.8 2.3E-05 5.1E-10 69.3 3.7 49 1-52 1111-1161(1267)
236 cd08693 C2_PI3K_class_I_beta_d 97.7 0.00052 1.1E-08 51.2 9.3 94 97-192 7-119 (173)
237 PLN02270 phospholipase D alpha 97.6 0.00015 3.2E-09 65.2 7.1 79 3-95 71-149 (808)
238 cd08398 C2_PI3K_class_I_alpha 97.6 0.00086 1.9E-08 49.2 9.7 92 97-192 7-105 (158)
239 PLN02964 phosphatidylserine de 97.6 0.00019 4.1E-09 63.6 7.1 87 94-192 50-136 (644)
240 cd08397 C2_PI3K_class_III C2 d 97.5 0.00087 1.9E-08 49.3 7.8 76 117-192 28-106 (159)
241 cd08380 C2_PI3K_like C2 domain 97.4 0.0016 3.5E-08 47.7 8.9 94 98-192 8-106 (156)
242 PF12416 DUF3668: Cep120 prote 97.3 0.0019 4E-08 53.2 9.0 100 100-206 2-114 (340)
243 cd04012 C2A_PI3K_class_II C2 d 97.2 0.0024 5.2E-08 47.6 8.0 96 97-192 7-118 (171)
244 KOG1265|consensus 97.2 0.00094 2E-08 60.0 6.1 93 97-199 702-800 (1189)
245 cd08695 C2_Dock-B C2 domains f 97.1 0.014 3E-07 44.0 11.1 59 134-192 53-113 (189)
246 cd08694 C2_Dock-A C2 domains f 97.1 0.016 3.4E-07 43.8 11.1 58 134-191 53-114 (196)
247 cd08399 C2_PI3K_class_I_gamma 97.1 0.0083 1.8E-07 44.8 9.5 94 98-192 10-121 (178)
248 PLN02352 phospholipase D epsil 97.0 0.0021 4.6E-08 57.8 6.6 76 2-95 55-131 (758)
249 PF14429 DOCK-C2: C2 domain in 96.9 0.034 7.3E-07 41.9 12.1 61 134-194 59-122 (184)
250 KOG0905|consensus 96.9 0.00053 1.1E-08 63.3 2.5 62 1-62 1570-1632(1639)
251 KOG3837|consensus 96.7 0.0013 2.9E-08 54.4 2.7 97 96-192 365-472 (523)
252 PF00792 PI3K_C2: Phosphoinosi 96.6 0.042 9.1E-07 39.6 9.9 73 120-192 3-84 (142)
253 PF15627 CEP76-C2: CEP76 C2 do 96.5 0.04 8.7E-07 40.1 9.4 102 96-209 7-121 (156)
254 smart00142 PI3K_C2 Phosphoinos 96.5 0.029 6.3E-07 37.8 8.1 77 100-176 13-92 (100)
255 cd08683 C2_C2cd3 C2 domain fou 96.5 0.0044 9.4E-08 43.3 4.0 54 1-55 57-134 (143)
256 cd08689 C2_fungal_Pkc1p C2 dom 96.4 0.0036 7.9E-08 42.3 3.2 44 3-52 43-87 (109)
257 PLN02964 phosphatidylserine de 96.2 0.003 6.4E-08 56.2 2.1 51 1-54 89-140 (644)
258 PF10358 NT-C2: N-terminal C2 95.9 0.38 8.2E-06 34.4 12.8 89 98-192 7-103 (143)
259 cd08679 C2_DOCK180_related C2 95.8 0.37 8E-06 36.1 11.7 58 135-192 53-115 (178)
260 PF12416 DUF3668: Cep120 prote 95.6 0.48 1E-05 39.2 12.4 49 2-51 39-94 (340)
261 PF10358 NT-C2: N-terminal C2 94.9 0.14 3.1E-06 36.6 6.9 50 5-54 52-107 (143)
262 cd08397 C2_PI3K_class_III C2 d 94.4 0.07 1.5E-06 39.2 4.3 47 4-51 59-107 (159)
263 PF14429 DOCK-C2: C2 domain in 94.2 0.11 2.5E-06 39.0 5.2 48 2-50 69-120 (184)
264 cd08679 C2_DOCK180_related C2 93.7 0.15 3.3E-06 38.2 4.9 47 3-50 63-115 (178)
265 cd08695 C2_Dock-B C2 domains f 93.5 0.14 3E-06 38.6 4.4 47 2-49 63-112 (189)
266 cd08694 C2_Dock-A C2 domains f 93.5 0.16 3.4E-06 38.5 4.6 46 3-49 64-114 (196)
267 cd08380 C2_PI3K_like C2 domain 93.5 0.11 2.4E-06 37.9 3.9 48 3-51 56-107 (156)
268 KOG3837|consensus 93.4 0.24 5.1E-06 41.6 5.8 80 2-95 414-504 (523)
269 cd08696 C2_Dock-C C2 domains f 93.4 0.51 1.1E-05 35.3 7.2 61 134-194 54-120 (179)
270 PF00792 PI3K_C2: Phosphoinosi 93.0 0.22 4.7E-06 35.8 4.6 48 3-51 32-85 (142)
271 PF15627 CEP76-C2: CEP76 C2 do 92.9 0.65 1.4E-05 33.9 6.9 84 2-96 55-152 (156)
272 PF15625 CC2D2AN-C2: CC2D2A N- 92.8 0.97 2.1E-05 33.5 8.0 68 119-193 37-106 (168)
273 KOG1452|consensus 92.8 0.51 1.1E-05 38.2 6.7 84 91-181 44-129 (442)
274 cd08697 C2_Dock-D C2 domains f 92.5 0.83 1.8E-05 34.4 7.3 59 134-192 56-123 (185)
275 cd08398 C2_PI3K_class_I_alpha 91.8 0.26 5.6E-06 36.2 3.8 47 4-51 54-106 (158)
276 cd08693 C2_PI3K_class_I_beta_d 90.7 0.43 9.3E-06 35.6 4.1 32 3-35 55-87 (173)
277 cd08687 C2_PKN-like C2 domain 90.5 1.8 3.9E-05 28.5 6.2 50 119-176 9-58 (98)
278 PF10409 PTEN_C2: C2 domain of 90.1 5 0.00011 28.2 10.1 89 98-191 4-95 (134)
279 cd04012 C2A_PI3K_class_II C2 d 90.0 0.4 8.7E-06 35.6 3.4 47 4-51 62-119 (171)
280 cd08687 C2_PKN-like C2 domain 89.0 1.7 3.8E-05 28.6 5.3 41 4-51 32-72 (98)
281 KOG4027|consensus 88.0 8.4 0.00018 28.1 9.4 46 164-222 82-127 (187)
282 cd08697 C2_Dock-D C2 domains f 87.9 1.5 3.3E-05 33.0 5.3 48 2-50 66-123 (185)
283 PF07162 B9-C2: Ciliary basal 87.4 9.8 0.00021 28.1 9.6 85 101-191 5-102 (168)
284 KOG1265|consensus 87.3 0.47 1E-05 43.6 2.6 47 1-52 748-795 (1189)
285 cd08696 C2_Dock-C C2 domains f 86.2 1.9 4.2E-05 32.3 5.0 48 2-50 64-118 (179)
286 KOG1327|consensus 84.7 3 6.5E-05 36.5 6.0 57 134-192 41-101 (529)
287 KOG0906|consensus 84.1 1.6 3.4E-05 39.0 4.2 75 118-192 46-123 (843)
288 PF07162 B9-C2: Ciliary basal 83.2 8.5 0.00018 28.5 7.3 48 5-53 57-106 (168)
289 PF11618 DUF3250: Protein of u 81.3 8.9 0.00019 26.1 6.2 57 134-192 11-72 (107)
290 cd08399 C2_PI3K_class_I_gamma 80.9 2.5 5.3E-05 31.7 3.7 33 3-36 57-90 (178)
291 smart00142 PI3K_C2 Phosphoinos 76.2 3.4 7.5E-05 27.6 3.0 31 4-35 61-92 (100)
292 PF11618 DUF3250: Protein of u 74.5 9.4 0.0002 26.0 4.8 53 2-56 20-78 (107)
293 PF14186 Aida_C2: Cytoskeletal 73.5 32 0.00069 24.9 7.6 95 96-193 11-112 (147)
294 KOG4269|consensus 67.8 6.1 0.00013 36.8 3.3 97 97-202 758-865 (1112)
295 KOG0904|consensus 66.3 51 0.0011 31.1 8.7 74 97-173 342-420 (1076)
296 PTZ00447 apical membrane antig 56.6 1.2E+02 0.0025 25.5 8.4 98 97-207 57-160 (508)
297 PF15625 CC2D2AN-C2: CC2D2A N- 51.2 97 0.0021 22.8 8.0 44 6-54 65-109 (168)
298 KOG1329|consensus 42.3 19 0.00041 33.7 2.2 83 119-208 138-224 (887)
299 PRK14280 chaperone protein Dna 34.1 1.8E+02 0.0039 24.6 6.7 83 25-130 251-336 (376)
300 KOG0694|consensus 33.9 17 0.00037 33.0 0.6 51 118-175 27-77 (694)
301 PRK14276 chaperone protein Dna 33.6 1.8E+02 0.0039 24.7 6.6 83 25-130 254-339 (380)
302 PRK14301 chaperone protein Dna 33.5 2.8E+02 0.0061 23.4 7.8 83 25-130 248-333 (373)
303 PF14924 DUF4497: Protein of u 33.3 64 0.0014 22.0 3.3 42 10-52 12-61 (112)
304 PF01060 DUF290: Transthyretin 32.0 89 0.0019 19.7 3.6 27 165-191 12-38 (80)
305 PRK10767 chaperone protein Dna 31.2 2E+02 0.0044 24.2 6.6 30 101-130 302-331 (371)
306 PRK14284 chaperone protein Dna 30.8 2.9E+02 0.0064 23.5 7.5 85 25-130 262-349 (391)
307 KOG2060|consensus 30.6 18 0.00038 30.4 0.1 51 1-55 316-368 (405)
308 COG5458 Uncharacterized conser 30.2 57 0.0012 22.6 2.5 41 176-222 77-117 (144)
309 cd05137 RasGAP_CLA2_BUD2 CLA2/ 30.1 83 0.0018 26.9 4.1 26 40-65 1-27 (395)
310 PF14909 SPATA6: Spermatogenes 30.1 2.1E+02 0.0046 20.6 10.0 70 118-192 19-98 (140)
311 PF06219 DUF1005: Protein of u 29.2 3.6E+02 0.0077 23.4 7.4 28 165-192 95-128 (460)
312 KOG0694|consensus 28.1 27 0.00059 31.7 0.9 46 1-51 49-95 (694)
313 KOG0906|consensus 28.1 55 0.0012 29.8 2.7 44 6-50 78-123 (843)
314 KOG3543|consensus 28.0 1.8E+02 0.004 26.5 5.8 96 99-204 342-440 (1218)
315 PRK14287 chaperone protein Dna 27.8 2.2E+02 0.0047 24.1 6.2 29 102-130 303-331 (371)
316 PRK14283 chaperone protein Dna 27.7 2.7E+02 0.0058 23.6 6.7 28 102-129 311-338 (378)
317 PRK14298 chaperone protein Dna 26.6 2.6E+02 0.0056 23.7 6.4 29 102-130 306-334 (377)
318 PRK14277 chaperone protein Dna 26.4 2.7E+02 0.0058 23.7 6.5 28 102-129 320-347 (386)
319 PRK14297 chaperone protein Dna 25.6 2.7E+02 0.0058 23.6 6.4 29 101-129 312-340 (380)
320 PF15084 DUF4550: Domain of un 25.2 55 0.0012 21.9 1.7 29 5-34 52-83 (99)
321 COG3822 ABC-type sugar transpo 25.2 85 0.0018 23.8 2.8 50 163-212 115-164 (225)
322 PRK14299 chaperone protein Dna 24.8 2.1E+02 0.0046 23.2 5.4 29 101-130 241-269 (291)
323 PRK14286 chaperone protein Dna 23.6 3E+02 0.0064 23.3 6.2 29 101-129 311-339 (372)
324 PRK14294 chaperone protein Dna 22.7 4.1E+02 0.0089 22.4 6.9 30 101-130 304-333 (366)
325 PRK14278 chaperone protein Dna 22.5 3.2E+02 0.007 23.1 6.3 29 101-129 304-332 (378)
326 COG0484 DnaJ DnaJ-class molecu 22.1 2.7E+02 0.0059 23.6 5.6 30 101-130 304-333 (371)
327 PRK14281 chaperone protein Dna 21.2 3.9E+02 0.0085 22.8 6.6 29 101-129 326-354 (397)
328 PRK14288 chaperone protein Dna 20.8 4.7E+02 0.01 22.1 6.9 83 25-130 242-328 (369)
329 PRK14290 chaperone protein Dna 20.8 3.9E+02 0.0084 22.5 6.4 29 102-130 311-339 (365)
330 TIGR02349 DnaJ_bact chaperone 20.2 4.9E+02 0.011 21.7 6.9 30 101-130 307-336 (354)
No 1
>KOG1028|consensus
Probab=100.00 E-value=2.1e-41 Score=282.95 Aligned_cols=208 Identities=36% Similarity=0.571 Sum_probs=188.2
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE 79 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 79 (224)
+|+||+|||+|.| .|+..++..+.|.+.|||+|+|++ ++||++.++|+.+.......+|.++.....-
T Consensus 211 ~tlnP~fnEtf~f-~v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~---------- 279 (421)
T KOG1028|consen 211 KTLNPVFNETFRF-EVPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTD---------- 279 (421)
T ss_pred cCcCCccccceEe-ecCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCC----------
Confidence 6899999999999 599999999999999999999999 9999999999999877776667666542100
Q ss_pred cceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEee
Q psy12137 80 ECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETK 158 (224)
Q Consensus 80 ~~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~ 158 (224)
.....|+|.++++|.+..++|+|.|++|++|+.++..+.+||||++++..+..+ .+++|.+++++.||+|||+|.|.++
T Consensus 280 ~~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp 359 (421)
T KOG1028|consen 280 SEELAGELLLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVP 359 (421)
T ss_pred cccccceEEEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCC
Confidence 012228999999999999999999999999999999999999999999877644 8899999999999999999999999
Q ss_pred cCcccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCC
Q psy12137 159 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 219 (224)
Q Consensus 159 ~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~ 219 (224)
.+.+.+..|.|+||+++.++++++||++.++....+.+..||.+|+++|++++++||.|.+
T Consensus 360 ~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~~~~~~~hW~~m~~~p~~pv~~wh~l~~ 420 (421)
T KOG1028|consen 360 PEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDSTGEEVRHWQEMLNSPRKPVAQWHSLRS 420 (421)
T ss_pred HHHhheeEEEEEEEEcccccccceeeEEEecCCCCchHHHHHHHHHhCccCceeeeEeccc
Confidence 9999999999999999999999999999999998888999999999999999999999976
No 2
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=100.00 E-value=5.7e-35 Score=209.07 Aligned_cols=135 Identities=24% Similarity=0.329 Sum_probs=125.5
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEeecCCCCC--CCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecC
Q psy12137 84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMD--SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKIT 160 (224)
Q Consensus 84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~--~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~ 160 (224)
.|+|.+++.|.+..++|.|.|++|+||+..+ ..+.+||||++++.+...+ .+++|++++++.||+|||+|.|.++..
T Consensus 1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~ 80 (138)
T cd08407 1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSE 80 (138)
T ss_pred CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHH
Confidence 3899999999999999999999999999887 3345899999999876544 688999999999999999999999988
Q ss_pred cccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecC
Q psy12137 161 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218 (224)
Q Consensus 161 ~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~ 218 (224)
++.+..|.|+|||++.++++++||++.+++.+.|.+.+||.+|+.+|++.+++||.|.
T Consensus 81 ~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml~~p~~~va~WH~L~ 138 (138)
T cd08407 81 LLAASSVELEVLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEMLDNPRRQIAMWHQLH 138 (138)
T ss_pred HhCccEEEEEEEeCCCCcCcceeceEEecCcCCCcHHHHHHHHHhCCCCchhEEEECC
Confidence 8888999999999999999999999999999999999999999999999999999984
No 3
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=100.00 E-value=4.4e-34 Score=204.62 Aligned_cols=135 Identities=30% Similarity=0.408 Sum_probs=126.5
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcc
Q psy12137 84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 162 (224)
Q Consensus 84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~ 162 (224)
.|+|.+++.|.+..++|.|.|++|+||+..+..|.+||||++++.+.+.+ .+++|++++++.||+|||+|.|.++..++
T Consensus 1 ~G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l 80 (136)
T cd08406 1 VGEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVL 80 (136)
T ss_pred CcEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHh
Confidence 48999999999999999999999999999888899999999999876544 57799999999999999999999988888
Q ss_pred cccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecC
Q psy12137 163 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218 (224)
Q Consensus 163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~ 218 (224)
.+..|.|+||+++.++++++||++.|+..+.|.+.+||.+|+++|+..+++||.|.
T Consensus 81 ~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~~~~~v~~WH~l~ 136 (136)
T cd08406 81 QDLSLRVTVAESTEDGKTPNVGHVIIGPAASGMGLSHWNQMLASLRKPVAMWHPLR 136 (136)
T ss_pred CCcEEEEEEEeCCCCCCCCeeEEEEECCCCCChhHHHHHHHHHCCCCeeeEeeecC
Confidence 88999999999999999999999999999999999999999999999999999984
No 4
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=100.00 E-value=1.6e-33 Score=198.86 Aligned_cols=132 Identities=16% Similarity=0.265 Sum_probs=119.4
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCC-CCeeceEEEEEeecCcc
Q psy12137 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTL-NPIFNEEFAIETKITEL 162 (224)
Q Consensus 85 g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~-~p~~~e~f~f~~~~~~~ 162 (224)
++|.+++.|.+..++|+|.|++|+||+.++..+..||||++++.+.+++ .++||++++++. +|.|||+|.|+++.+.
T Consensus 1 ~el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~- 79 (135)
T cd08692 1 AELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQE- 79 (135)
T ss_pred CeEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchh-
Confidence 4799999999999999999999999999876777899999999887656 789999999995 6999999999998754
Q ss_pred cccEEEEEEEECCCCCCCceeEEEEEecCCC-CCccchhhhhhcCCCceeEeeeec
Q psy12137 163 SKQTLVITVWDKDYGKSNDYLGCLELCCNSK-GDRLRHWVDMMKYPDHKHEGIHNL 217 (224)
Q Consensus 163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~-~~~~~~w~~l~~~~~~~~~~wh~l 217 (224)
.+..|.|+|||++.++++++||++.++.++. +++.+||.+|+.+|++.|++||.|
T Consensus 80 ~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~~pr~~ia~WH~L 135 (135)
T cd08692 80 HGIQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIANPEKVVTKWHSL 135 (135)
T ss_pred heeEEEEEEEeCCCCcCCceEEEEEECCccCCchhhhhHHHHHhCCCCeeeEeecC
Confidence 4578999999999999999999999999874 467999999999999999999987
No 5
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=100.00 E-value=4.5e-32 Score=195.10 Aligned_cols=134 Identities=27% Similarity=0.412 Sum_probs=124.2
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC--CeEeeeeeeCCCCCeeceEEEEEeecCcc
Q psy12137 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITEL 162 (224)
Q Consensus 85 g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~--~~~~T~~~~~~~~p~~~e~f~f~~~~~~~ 162 (224)
|+|.+++.|.+..++|.|.|++|+||+..+..|.+||||++++.+..++ .+++|++++++.||+|||+|.|.++.+++
T Consensus 2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l 81 (138)
T cd08408 2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL 81 (138)
T ss_pred CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh
Confidence 7899999999999999999999999999988889999999999875443 46799999999999999999999988888
Q ss_pred cccEEEEEEEECCCCCCCceeEEEEEecCCCC-CccchhhhhhcCCCceeEeeeecC
Q psy12137 163 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKG-DRLRHWVDMMKYPDHKHEGIHNLS 218 (224)
Q Consensus 163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~-~~~~~w~~l~~~~~~~~~~wh~l~ 218 (224)
.+..|.|+||+++.++++++||++.+++...+ .+.+||++|+.+|++.|++||.|.
T Consensus 82 ~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~~~~~v~~WH~l~ 138 (138)
T cd08408 82 SEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKESKGQQVCRWHTLL 138 (138)
T ss_pred CccEEEEEEEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHhCCCCEEeEeeecC
Confidence 88999999999999999999999999999887 467999999999999999999984
No 6
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.98 E-value=2.3e-31 Score=191.57 Aligned_cols=133 Identities=24% Similarity=0.388 Sum_probs=122.0
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcc
Q psy12137 84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 162 (224)
Q Consensus 84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~ 162 (224)
.|+|++++.|.+..++|.|.|++|+||+..+ .+.+||||++++.+.... .+++|++++++.||.|||+|.|.++..++
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l 79 (137)
T cd08409 1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQL 79 (137)
T ss_pred CcEEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHh
Confidence 4899999999999999999999999999888 778999999999876433 57799999999999999999999988888
Q ss_pred cccEEEEEEEECCCCCCCceeEEEEEecC--CCCCccchhhhhhcCCCceeEeeeec
Q psy12137 163 SKQTLVITVWDKDYGKSNDYLGCLELCCN--SKGDRLRHWVDMMKYPDHKHEGIHNL 217 (224)
Q Consensus 163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~--~~~~~~~~w~~l~~~~~~~~~~wh~l 217 (224)
.+..|.|+||+++.++++++||++.|+.. +.+.+.+||.+|+.+|++.|++||.|
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i~~WH~l 136 (137)
T cd08409 80 DTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELIKRWHAL 136 (137)
T ss_pred CccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCceeEEEeC
Confidence 88899999999998889999999999965 56788999999999999999999998
No 7
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.97 E-value=1.1e-30 Score=188.28 Aligned_cols=135 Identities=36% Similarity=0.608 Sum_probs=123.7
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcc
Q psy12137 84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 162 (224)
Q Consensus 84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~ 162 (224)
.|+|.+++.|.+..+.|.|.|++|++|+..+..|.+||||++++.+.+.. ..++|++++++.+|.|||+|.|.++..++
T Consensus 1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l 80 (136)
T cd08402 1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQI 80 (136)
T ss_pred CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHh
Confidence 48999999999999999999999999999888899999999998654333 57789999999999999999999876666
Q ss_pred cccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecC
Q psy12137 163 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218 (224)
Q Consensus 163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~ 218 (224)
....|.|+|||++.++++++||++.|++.+.+.+..||.+|+..|++.+++||.|+
T Consensus 81 ~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~~~~~~W~~~~~~~~~~~~~wh~~~ 136 (136)
T cd08402 81 QKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLASPRRPIAQWHTLQ 136 (136)
T ss_pred CCCEEEEEEEeCCCCCCCceeEEEEECCccCChHHHHHHHHHhCCCCeeeEEEEcC
Confidence 66789999999999989999999999999999999999999999999999999985
No 8
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.97 E-value=2.8e-30 Score=185.61 Aligned_cols=133 Identities=30% Similarity=0.511 Sum_probs=120.6
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCccc
Q psy12137 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELS 163 (224)
Q Consensus 85 g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~ 163 (224)
|+|.+++.|.+..+.|.|.|++|++|+..+..|.+||||++++.++... .+++|++++++.||.|||+|.|.++..++.
T Consensus 1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~ 80 (135)
T cd08410 1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELE 80 (135)
T ss_pred CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhC
Confidence 7999999999999999999999999999988899999999998654322 578999999999999999999999777777
Q ss_pred ccEEEEEEEECCCCCCCceeEEEEEecCCCCC-ccchhhhhhcCCCceeEeeeec
Q psy12137 164 KQTLVITVWDKDYGKSNDYLGCLELCCNSKGD-RLRHWVDMMKYPDHKHEGIHNL 217 (224)
Q Consensus 164 ~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~-~~~~w~~l~~~~~~~~~~wh~l 217 (224)
...|.|+|||++..+++++||++.|+....+. +..||+.|+++|+.+|++||.|
T Consensus 81 ~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~~~~~~wh~l 135 (135)
T cd08410 81 NVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQRTAVEQWHSL 135 (135)
T ss_pred CCEEEEEEEeCCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCCCEeeEeecC
Confidence 67899999999998999999999999877664 6899999999999999999987
No 9
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.97 E-value=7.3e-30 Score=183.33 Aligned_cols=132 Identities=61% Similarity=0.999 Sum_probs=120.8
Q ss_pred EEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcccc
Q psy12137 86 KIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSK 164 (224)
Q Consensus 86 ~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~ 164 (224)
.|++++.|....+.|.|+|++|++|+..+..|.+||||++++.+...+ .+.+|++++++.+|.|||+|.|.+...++..
T Consensus 1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~ 80 (133)
T cd08384 1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK 80 (133)
T ss_pred CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence 378999999999999999999999999988889999999999765433 6789999999999999999999987666666
Q ss_pred cEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeec
Q psy12137 165 QTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 217 (224)
Q Consensus 165 ~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l 217 (224)
..|.|+|||++..+++++||++.+++.+.+....||++|+.+|++.+++||.|
T Consensus 81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~W~~~l~~~~~~~~~wh~l 133 (133)
T cd08384 81 KTLEITVWDKDIGKSNDYIGGLQLGINAKGERLRHWLDCLKNPDKKIEAWHTL 133 (133)
T ss_pred CEEEEEEEeCCCCCCccEEEEEEEecCCCCchHHHHHHHHhCCCCChheeecC
Confidence 78999999999888899999999999998888999999999999999999986
No 10
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.97 E-value=8.4e-30 Score=183.62 Aligned_cols=135 Identities=40% Similarity=0.658 Sum_probs=123.0
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcc
Q psy12137 84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 162 (224)
Q Consensus 84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~ 162 (224)
.|+|.+++.|.+..+.|.|.|++|+||+..+..|.+||||++++.+.+.. .+.+|++++++.+|.|||+|.|.++.+.+
T Consensus 1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~ 80 (136)
T cd08405 1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERL 80 (136)
T ss_pred CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHh
Confidence 58999999999999999999999999998888889999999998654323 57799999999999999999999876666
Q ss_pred cccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecC
Q psy12137 163 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218 (224)
Q Consensus 163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~ 218 (224)
.+..|.|+|||++.++++++||++.+++.+.+.+..||++|+..|++.+++||.|.
T Consensus 81 ~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~~~~~w~~~~~~~~~~~~~wh~l~ 136 (136)
T cd08405 81 RETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQPVAQWHRLK 136 (136)
T ss_pred CCCEEEEEEEECCCCCCCcEeEEEEECCccCCchHHHHHHHHhCCCCchhEEEecC
Confidence 66789999999999989999999999999888899999999999999999999984
No 11
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.97 E-value=1.2e-29 Score=182.76 Aligned_cols=135 Identities=32% Similarity=0.521 Sum_probs=123.2
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcc
Q psy12137 84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 162 (224)
Q Consensus 84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~ 162 (224)
+|+|.++++|....+.|.|.|++|++|+..+..|.+||||++++.+.... .+.+|++++++.||.|||+|.|.++...+
T Consensus 1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~ 80 (136)
T cd08404 1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEEL 80 (136)
T ss_pred CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHh
Confidence 58999999999999999999999999999988899999999998755323 57899999999999999999999876666
Q ss_pred cccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecC
Q psy12137 163 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218 (224)
Q Consensus 163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~ 218 (224)
....|.|+|||++.++++++||++.+++.+.+.+..||++|...|++.+.+||.|.
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~~~~~~~~w~~l~~~~~~~i~~Wh~l~ 136 (136)
T cd08404 81 EDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRRQIAEWHMLC 136 (136)
T ss_pred CCCEEEEEEEECCCCCCCccEEEEEECCcCCCchHHHHHHHHhCCCCeeeEEEecC
Confidence 66789999999999999999999999999988899999999999999999999984
No 12
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.97 E-value=1.1e-29 Score=182.61 Aligned_cols=133 Identities=32% Similarity=0.569 Sum_probs=121.8
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCccc
Q psy12137 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELS 163 (224)
Q Consensus 85 g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~ 163 (224)
|+|.+++.|.+..+.|.|.|++|++|+..+..|.+||||++++.+.+.+ ..++|++++++.+|.|||+|.|.+....+.
T Consensus 1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~ 80 (134)
T cd08403 1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVD 80 (134)
T ss_pred CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhC
Confidence 7899999999999999999999999999988899999999998754433 678999999999999999999998766666
Q ss_pred ccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeec
Q psy12137 164 KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 217 (224)
Q Consensus 164 ~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l 217 (224)
...|.|+|||++.++++++||++.+++.+.+.+..||++|+.+|++.+++||.|
T Consensus 81 ~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~~~~~~w~~~~~~~~~~~~~wh~~ 134 (134)
T cd08403 81 NVSLIIAVVDYDRVGHNELIGVCRVGPNADGQGREHWNEMLANPRKPIAQWHQL 134 (134)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEECCCCCCchHHHHHHHHHCCCCeeeEeecC
Confidence 667999999999999999999999999988888999999999999999999987
No 13
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.97 E-value=1.6e-29 Score=174.53 Aligned_cols=116 Identities=22% Similarity=0.252 Sum_probs=106.2
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccc
Q psy12137 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSK 164 (224)
Q Consensus 85 g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~ 164 (224)
|+|++++.|.+..+.|+|.|++|++|+ ..|.+||||++++.++.++.+++|++++++.||+|||+|.|.++.+++.+
T Consensus 1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~ 77 (118)
T cd08677 1 PKLHYSLSYDKQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLD 77 (118)
T ss_pred CeEEEEEEEcCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCC
Confidence 589999999999999999999999998 23569999999998765457889999999999999999999999999999
Q ss_pred cEEEEEEEECCCCCCCceeEEEEEecCC--CCCccchhhhh
Q psy12137 165 QTLVITVWDKDYGKSNDYLGCLELCCNS--KGDRLRHWVDM 203 (224)
Q Consensus 165 ~~l~i~v~~~~~~~~~~~lG~~~l~l~~--~~~~~~~w~~l 203 (224)
..|.|+|||+|+++++++||++.+++++ .+.+.+||.+|
T Consensus 78 ~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 78 GTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred cEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 9999999999999999999999999996 47889999865
No 14
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.96 E-value=3.2e-28 Score=175.06 Aligned_cols=133 Identities=38% Similarity=0.610 Sum_probs=121.3
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCccc
Q psy12137 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELS 163 (224)
Q Consensus 85 g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~ 163 (224)
|+|++++.|.+..+.|.|.|++|++|+..+..+.+||||++++.+.... ..++|++++++.+|.|||+|.|.+....+.
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~ 80 (134)
T cd00276 1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLE 80 (134)
T ss_pred CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhC
Confidence 7999999999999999999999999999887889999999999765433 577999999999999999999998766655
Q ss_pred ccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeec
Q psy12137 164 KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 217 (224)
Q Consensus 164 ~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l 217 (224)
...|.|+||+++..+++++||++.+++++.+.+.+||++|+++|++.+++||.|
T Consensus 81 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~wh~~ 134 (134)
T cd00276 81 EVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRKPIARWHKL 134 (134)
T ss_pred CcEEEEEEEecCCCCCCceeEEEEECCCCCCcHHHHHHHHHhCCCCceEEeeeC
Confidence 678999999999888899999999999997889999999999999999999987
No 15
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.95 E-value=2.3e-26 Score=169.72 Aligned_cols=135 Identities=35% Similarity=0.552 Sum_probs=119.6
Q ss_pred ceEEEEEEEEeC------------CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeec
Q psy12137 84 HGKIFLTLCFST------------KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFN 150 (224)
Q Consensus 84 ~g~l~i~~~~~~------------~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~ 150 (224)
+|+|.+++.|.+ ..+.|.|.|++|+||+..+..+.+||||++++.+...+ .+++|++++++.||.||
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn 80 (162)
T cd04020 1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN 80 (162)
T ss_pred CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence 589999999999 45899999999999999988899999999998765433 78899999999999999
Q ss_pred eEEEEEe-ecCcccccEEEEEEEECCCCCCCceeEEEEEecCC-------------CCCccchhhhhhcCCCceeEeeee
Q psy12137 151 EEFAIET-KITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS-------------KGDRLRHWVDMMKYPDHKHEGIHN 216 (224)
Q Consensus 151 e~f~f~~-~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~-------------~~~~~~~w~~l~~~~~~~~~~wh~ 216 (224)
|+|.|.+ ...++.+..|.|+|||++.++++++||++.+++.. .+.+..||++|+.+|...|++-.|
T Consensus 81 E~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~~~~~w~~~~~~p~~~~~~~~~ 160 (162)
T cd04020 81 HTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGEEILLWQKMLDNPNSWVEGTLP 160 (162)
T ss_pred CEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCChHHHHHHHHHHhCCCCeEEEEEe
Confidence 9999984 34556667899999999999889999999999985 367889999999999999999988
Q ss_pred cC
Q psy12137 217 LS 218 (224)
Q Consensus 217 l~ 218 (224)
|.
T Consensus 161 ~~ 162 (162)
T cd04020 161 LR 162 (162)
T ss_pred cC
Confidence 73
No 16
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.94 E-value=3e-26 Score=162.55 Aligned_cols=123 Identities=35% Similarity=0.534 Sum_probs=107.4
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCC-CCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCc
Q psy12137 84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITE 161 (224)
Q Consensus 84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~-g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~ 161 (224)
+|+|++++.|.+..+.|.|.|++|+||+..+.. |.+||||++++.+.... .+++|++++++.||.|||+|.|.+...+
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~ 80 (125)
T cd08393 1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREE 80 (125)
T ss_pred CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHH
Confidence 599999999999999999999999999998875 89999999999876544 5689999999999999999999997777
Q ss_pred ccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecC
Q psy12137 162 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218 (224)
Q Consensus 162 ~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~ 218 (224)
+....|.|+|||++.++++++||++.++|.... .+.....|++|+
T Consensus 81 l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~------------~~~~~~~W~~L~ 125 (125)
T cd08393 81 LPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWD------------WSNTQPTWYPLQ 125 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeEEEEEecCccc------------cCCCCcceEECc
Confidence 777899999999999999999999999998743 123456677764
No 17
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.94 E-value=5.6e-26 Score=160.99 Aligned_cols=123 Identities=33% Similarity=0.535 Sum_probs=108.1
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCC-CCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCc
Q psy12137 84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITE 161 (224)
Q Consensus 84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~-~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~ 161 (224)
.|+|++++.|.+..+.|.|.|++|+||+..+. .|.+||||++++.+...+ .+++|++++++.+|.|||+|.|.++..+
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~ 80 (125)
T cd04029 1 SGEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQ 80 (125)
T ss_pred CcEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHH
Confidence 49999999999999999999999999998765 478999999999876543 6789999999999999999999998777
Q ss_pred ccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecC
Q psy12137 162 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218 (224)
Q Consensus 162 ~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~ 218 (224)
+....|.|+|||++.++++++||++.+++.+.. ++..++.|++|+
T Consensus 81 l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~------------~~~~~~~w~~l~ 125 (125)
T cd04029 81 LETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWN------------FDSQHEECLPLH 125 (125)
T ss_pred hCCCEEEEEEEECCCCCCCcEEEEEEEeCCccc------------ccCCcccEEECc
Confidence 777889999999999999999999999998743 345688888875
No 18
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.94 E-value=6.5e-26 Score=161.03 Aligned_cols=125 Identities=27% Similarity=0.362 Sum_probs=108.6
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCC-CCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCc
Q psy12137 84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITE 161 (224)
Q Consensus 84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~-g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~ 161 (224)
.|+|++++.|....+.|.|.|++|+||+..+.. |.+||||++++.+..+. .+++|++++++.||+|||+|.|.++..+
T Consensus 1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~ 80 (128)
T cd08392 1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADL 80 (128)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHH
Confidence 489999999999999999999999999988864 89999999999876544 6889999999999999999999998777
Q ss_pred ccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeec
Q psy12137 162 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 217 (224)
Q Consensus 162 ~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l 217 (224)
+....|.|.||+.+.++++++||++.|+|..... ......+..||+|
T Consensus 81 l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~---------~~~~~~~~~W~~l 127 (128)
T cd08392 81 LSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDF---------EDTDSQRFLWYPL 127 (128)
T ss_pred hCCcEEEEEEEeCCCCcCcceEEEEEEEcCCccc---------CCCCccccceEEC
Confidence 8788999999999998899999999999987431 1224466777776
No 19
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.94 E-value=5.3e-26 Score=160.21 Aligned_cols=117 Identities=18% Similarity=0.310 Sum_probs=104.9
Q ss_pred EEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC--CeEeeeeeeCCCCCeeceEEEEEeecCccc
Q psy12137 86 KIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS 163 (224)
Q Consensus 86 ~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~--~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~ 163 (224)
+|++++.|.+..+.|.|.|++|+||+..+..|.+||||++++.++.++ .+++|++++++.||+|||+|.|+++.+++.
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 789999999999999999999999999888889999999999987753 588999999999999999999999999999
Q ss_pred ccEEEEEEEECCCCCCCceeEEEEEecCCCC---Cccchhhh
Q psy12137 164 KQTLVITVWDKDYGKSNDYLGCLELCCNSKG---DRLRHWVD 202 (224)
Q Consensus 164 ~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~---~~~~~w~~ 202 (224)
+..|.|+||+++.++++++||++.|+|.... ++..+|++
T Consensus 82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~ 123 (124)
T cd08680 82 QKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYN 123 (124)
T ss_pred cCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCcccccccc
Confidence 9999999999999999999999999988642 33455554
No 20
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.94 E-value=2.3e-25 Score=157.18 Aligned_cols=108 Identities=31% Similarity=0.533 Sum_probs=97.5
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEe-ecCc
Q psy12137 84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIET-KITE 161 (224)
Q Consensus 84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~-~~~~ 161 (224)
.|+|.+++.|. .+.|.|.|++|++|+..+ .+.+||||++++.+...+ .+++|++++++.||.|||+|.|.+ +..+
T Consensus 1 ~G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~ 77 (122)
T cd08381 1 GGQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVED 77 (122)
T ss_pred CCeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHH
Confidence 38999999999 799999999999999998 889999999999876544 688999999999999999999997 5566
Q ss_pred ccccEEEEEEEECCCCCCCceeEEEEEecCCCC
Q psy12137 162 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG 194 (224)
Q Consensus 162 ~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~ 194 (224)
+....|.|+|||++.++++++||++.|++....
T Consensus 78 l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~ 110 (122)
T cd08381 78 LQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLD 110 (122)
T ss_pred hCCCEEEEEEEeCCCCcCCcEEEEEEEeccccc
Confidence 777899999999999999999999999998743
No 21
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.93 E-value=6.4e-25 Score=158.27 Aligned_cols=125 Identities=24% Similarity=0.347 Sum_probs=106.5
Q ss_pred ceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCC-CCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEee
Q psy12137 81 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETK 158 (224)
Q Consensus 81 ~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~-~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~ 158 (224)
....|+|++++.| ..+.|.|.|++|+||+..+ ..|.+||||++++.++..+ .+++|++++++.||+|||+|.|.+.
T Consensus 14 ~~~~G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~ 91 (146)
T cd04028 14 SPSMGDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS 91 (146)
T ss_pred CCCcceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc
Confidence 3678999999999 4789999999999998864 4678999999999876544 6889999999999999999999995
Q ss_pred cCcccccEEEEEEE-ECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCCC
Q psy12137 159 ITELSKQTLVITVW-DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL 222 (224)
Q Consensus 159 ~~~~~~~~l~i~v~-~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~~ 222 (224)
+.+..|.|+|| +++.++++++||++.|+|+... .+..+..||+|.|+..
T Consensus 92 ---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~------------~~~~~~~Wy~L~~~~~ 141 (146)
T cd04028 92 ---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLD------------LSNLVIGWYKLFPTSS 141 (146)
T ss_pred ---CCCCEEEEEEEeCCCCCCCCceEEEEEEEccccc------------CCCCceeEEecCCccc
Confidence 56789999999 5778888999999999998753 2345688888887653
No 22
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.93 E-value=1.3e-24 Score=154.59 Aligned_cols=126 Identities=29% Similarity=0.466 Sum_probs=109.2
Q ss_pred eceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCC-CCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEE-EeecC
Q psy12137 83 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAI-ETKIT 160 (224)
Q Consensus 83 ~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~-g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f-~~~~~ 160 (224)
..|+|.+++.|....+.|.|.|++|+||+..+.. |.+||||++++.+.. +++.+|++++++.||.|||+|.| .++..
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~-~~~~kT~v~~~t~nP~wnE~F~f~~~~~~ 79 (128)
T cd08388 1 KLGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEK-EHKVKTRVLRKTRNPVYDETFTFYGIPYN 79 (128)
T ss_pred CCeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCc-CceeeccEEcCCCCCceeeEEEEcccCHH
Confidence 3699999999999999999999999999998875 899999999987543 46789999999999999999999 47666
Q ss_pred cccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCC
Q psy12137 161 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 219 (224)
Q Consensus 161 ~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~ 219 (224)
++.+..|.|+||+++.++++++||++.++|..... ..+++.+.|.+|+|
T Consensus 80 ~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~----------~~~~~~~~~~~~~~ 128 (128)
T cd08388 80 QLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADL----------LNEGELLVSREIQP 128 (128)
T ss_pred HhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCC----------CCCceEEEEEeccC
Confidence 66667899999999999999999999999987541 23457999999987
No 23
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.93 E-value=1.3e-24 Score=153.93 Aligned_cols=122 Identities=21% Similarity=0.296 Sum_probs=109.1
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEE-eecCcc
Q psy12137 84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE-TKITEL 162 (224)
Q Consensus 84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~-~~~~~~ 162 (224)
.|+|++++.|.+..+.|.|.|++|+||+..+..|.+||||++.+.+.. +.+++|+++++ .||+|||+|.|+ ++..++
T Consensus 2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~-~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l 79 (124)
T cd08389 2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSK-KQRAKTKVQRG-PNPVFNETFTFSRVEPEEL 79 (124)
T ss_pred CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCC-cceeecccccC-CCCcccCEEEECCCCHHHh
Confidence 699999999999999999999999999999888899999999887654 47789999888 999999999998 877788
Q ss_pred cccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCC
Q psy12137 163 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 219 (224)
Q Consensus 163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~ 219 (224)
.+..|.|+||+++.++++++||++.|+|+... ++.....|++|+|
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~------------~~~~~~~w~~L~p 124 (124)
T cd08389 80 NNMALRFRLYGVERMRKERLIGEKVVPLSQLN------------LEGETTVWLTLEP 124 (124)
T ss_pred ccCEEEEEEEECCCcccCceEEEEEEeccccC------------CCCCceEEEeCCC
Confidence 88899999999999999999999999998753 2456888999886
No 24
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.92 E-value=4.2e-24 Score=151.53 Aligned_cols=122 Identities=30% Similarity=0.454 Sum_probs=106.9
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCccc
Q psy12137 84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELS 163 (224)
Q Consensus 84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~ 163 (224)
.|+|++++.|.+..+.|.|.|++|++|+..+..|.+||||++++.+.. ...++|++++++.+|.|||+|.|.++..++.
T Consensus 2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~-~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~ 80 (124)
T cd08387 2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDR-SNTKQSKIHKKTLNPEFDESFVFEVPPQELP 80 (124)
T ss_pred CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCC-CCcEeCceEcCCCCCCcccEEEEeCCHHHhC
Confidence 699999999999999999999999999998888999999999986543 4678999999999999999999998777676
Q ss_pred ccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecC
Q psy12137 164 KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218 (224)
Q Consensus 164 ~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~ 218 (224)
...|.|+|||++.++++++||++.+++++... +..+..|++|+
T Consensus 81 ~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~------------~~~~~~W~~l~ 123 (124)
T cd08387 81 KRTLEVLLYDFDQFSRDECIGVVELPLAEVDL------------SEKLDLWRKIQ 123 (124)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEEecccccC------------CCCcceEEECc
Confidence 77999999999999899999999999987531 22567787775
No 25
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.92 E-value=3.2e-24 Score=152.17 Aligned_cols=119 Identities=37% Similarity=0.639 Sum_probs=104.0
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCccc
Q psy12137 84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELS 163 (224)
Q Consensus 84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~ 163 (224)
.|+|.+++.|....+.|.|.|++|+||+..+..+.+||||++++.+.. +..++|++++++.+|.|||+|.|.+...++.
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~-~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~ 80 (124)
T cd08385 2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK-KKKFETKVHRKTLNPVFNETFTFKVPYSELG 80 (124)
T ss_pred ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCC-CCceecccCcCCCCCceeeeEEEeCCHHHhC
Confidence 699999999999999999999999999998888899999999987543 4678999999999999999999998765666
Q ss_pred ccEEEEEEEECCCCCCCceeEEEEEecCCC--CCccchhhhh
Q psy12137 164 KQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVDM 203 (224)
Q Consensus 164 ~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~--~~~~~~w~~l 203 (224)
...|.|+|||++.++++++||++.++++.. +....+|++|
T Consensus 81 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 81 NKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred CCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 678999999999988999999999999874 3455555554
No 26
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.91 E-value=1.3e-23 Score=148.78 Aligned_cols=109 Identities=37% Similarity=0.578 Sum_probs=98.2
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEeecCCCCC-CCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcc
Q psy12137 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 162 (224)
Q Consensus 85 g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~-~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~ 162 (224)
|+|++++.|....+.|.|.|++|+||+..+ ..+.+||||++++.+.... .+.+|++++++.+|.|||+|.|.+...++
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l 80 (123)
T cd08521 1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQL 80 (123)
T ss_pred CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHh
Confidence 799999999999999999999999999988 6789999999998765433 67899999999999999999999877666
Q ss_pred cccEEEEEEEECCCCCCCceeEEEEEecCCC
Q psy12137 163 SKQTLVITVWDKDYGKSNDYLGCLELCCNSK 193 (224)
Q Consensus 163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~ 193 (224)
....|.|+||+++.++++++||++.++++..
T Consensus 81 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l 111 (123)
T cd08521 81 ETRTLQLSVWHHDRFGRNTFLGEVEIPLDSW 111 (123)
T ss_pred CCCEEEEEEEeCCCCcCCceeeEEEEecccc
Confidence 6678999999999988999999999999874
No 27
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.91 E-value=2.3e-23 Score=148.34 Aligned_cols=123 Identities=33% Similarity=0.552 Sum_probs=106.1
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcc
Q psy12137 84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 162 (224)
Q Consensus 84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~ 162 (224)
.|+|++++.|.+..+.|.|.|++|+||+..+..+.+||||++++.+.... .+++|++++++.+|.|||+|.|.+...++
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l 81 (127)
T cd04030 2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEEL 81 (127)
T ss_pred CeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHh
Confidence 69999999999999999999999999999988889999999999765433 78899999999999999999999877777
Q ss_pred cccEEEEEEEECCCC--CCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecC
Q psy12137 163 SKQTLVITVWDKDYG--KSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218 (224)
Q Consensus 163 ~~~~l~i~v~~~~~~--~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~ 218 (224)
....|.|.||+++.+ +++++||++.+++.... .+....+|++|+
T Consensus 82 ~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~------------~~~~~~~W~~L~ 127 (127)
T cd04030 82 KRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLD------------LSKGFTQWYDLT 127 (127)
T ss_pred cCCEEEEEEEECCcccCCCCceEEEEEEeccccc------------ccCCccceEECc
Confidence 778999999999875 67899999999998742 123557777764
No 28
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.91 E-value=1.8e-23 Score=146.72 Aligned_cols=117 Identities=24% Similarity=0.454 Sum_probs=97.8
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCccc
Q psy12137 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELS 163 (224)
Q Consensus 85 g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~ 163 (224)
|+|.+++.| ..+.|.|.|++|+||+.++ .|.+||||++++.++..+ .+++|++++++.+|.|||+|.|.+...++.
T Consensus 1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~ 77 (119)
T cd08685 1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQ 77 (119)
T ss_pred CEEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhC
Confidence 788888888 5899999999999999887 789999999999876544 677999999999999999999998765554
Q ss_pred ccEEEEEEEECCCCC-CCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeec
Q psy12137 164 KQTLVITVWDKDYGK-SNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 217 (224)
Q Consensus 164 ~~~l~i~v~~~~~~~-~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l 217 (224)
..|.|+||+++..+ ++++||++.|++.... .+..+.+||+|
T Consensus 78 -~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~------------~~~~~~~Wy~l 119 (119)
T cd08685 78 -KRLLVTVWNKLSKSRDSGLLGCMSFGVKSIV------------NQKEISGWYYL 119 (119)
T ss_pred -CEEEEEEECCCCCcCCCEEEEEEEecHHHhc------------cCccccceEeC
Confidence 47889999998765 4689999999997632 23456777765
No 29
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.91 E-value=4.2e-23 Score=146.58 Aligned_cols=123 Identities=33% Similarity=0.476 Sum_probs=105.2
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEe-ecCcc
Q psy12137 84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIET-KITEL 162 (224)
Q Consensus 84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~-~~~~~ 162 (224)
.|+|++++.|....+.|.|.|++|+||+..+..+.+||||++++.+.. ....+|++++++.+|.|||+|.|.. +.+.+
T Consensus 2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~-~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l 80 (125)
T cd08386 2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDK-KHKLETKVKRKNLNPHWNETFLFEGFPYEKL 80 (125)
T ss_pred ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCC-CcceeeeeecCCCCCccceeEEEcccCHHHh
Confidence 599999999999999999999999999998888899999999986543 4678999999999999999999983 33445
Q ss_pred cccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCC
Q psy12137 163 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 219 (224)
Q Consensus 163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~ 219 (224)
....|.|+|||++.++++++||++.+++.... .+.....|+.|+|
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~------------~~~~~~~W~~l~~ 125 (125)
T cd08386 81 QQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVD------------LTEEQTFWKDLKP 125 (125)
T ss_pred CCCEEEEEEEeCCCCcCCcEeeEEEEeccccc------------CCCCcceEEecCC
Confidence 55689999999999888999999999998743 2345778888776
No 30
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.90 E-value=4.7e-23 Score=146.33 Aligned_cols=109 Identities=33% Similarity=0.590 Sum_probs=97.2
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEe-ecCc
Q psy12137 84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIET-KITE 161 (224)
Q Consensus 84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~-~~~~ 161 (224)
.|+|.+++.|.+..+.|.|.|++|++|+..+..+.+||||++++.+.... .+++|++++++.+|.|||+|.|.+ ...+
T Consensus 2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~ 81 (125)
T cd04031 2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRET 81 (125)
T ss_pred cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHH
Confidence 59999999999999999999999999999888889999999999764433 678999999999999999999984 4345
Q ss_pred ccccEEEEEEEECCCCCCCceeEEEEEecCC
Q psy12137 162 LSKQTLVITVWDKDYGKSNDYLGCLELCCNS 192 (224)
Q Consensus 162 ~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~ 192 (224)
+....|.|+|||++.++++++||++.+++..
T Consensus 82 l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 82 LKERTLEVTVWDYDRDGENDFLGEVVIDLAD 112 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeeEEEEeccc
Confidence 5567899999999998889999999999987
No 31
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.90 E-value=1.5e-22 Score=143.36 Aligned_cols=122 Identities=29% Similarity=0.444 Sum_probs=104.6
Q ss_pred eEEEEEEEEeCCCCEEEEEEEEeecCCCCC-CCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCccc
Q psy12137 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELS 163 (224)
Q Consensus 85 g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~-~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~ 163 (224)
|+|.+++.|....+.|.|.|++|++|+..+ ..+.+||||++++.+.. ....+|++++++.+|.|||.|.|.++...+.
T Consensus 1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~-~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~ 79 (123)
T cd08390 1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE-RRSLQSKVKRKTQNPNFDETFVFQVSFKELQ 79 (123)
T ss_pred CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC-CCceEeeeEcCCCCCccceEEEEEcCHHHhc
Confidence 899999999999999999999999999987 57889999999987543 4567899999999999999999998766666
Q ss_pred ccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCC
Q psy12137 164 KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 219 (224)
Q Consensus 164 ~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~ 219 (224)
...|.|.||+++..+++++||++.++++.... ......|++|.|
T Consensus 80 ~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~------------~~~~~~w~~L~~ 123 (123)
T cd08390 80 RRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDL------------VKGGVVWRDLEP 123 (123)
T ss_pred ccEEEEEEEECCcCCCCcEEEEEEEeccceec------------CCCceEEEeCCC
Confidence 67899999999998889999999999987431 234567777754
No 32
>KOG1013|consensus
Probab=99.90 E-value=6.3e-24 Score=165.98 Aligned_cols=216 Identities=34% Similarity=0.538 Sum_probs=190.8
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE 79 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 79 (224)
+++||+|||+-....+..++.....+++.|.|-+.+.+ +++|+..+++..+...+...+..+|+...+.. .....
T Consensus 139 n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~----rad~~ 214 (362)
T KOG1013|consen 139 NTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSE----RADRD 214 (362)
T ss_pred cCcCcceeccceecccccchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcc----ccccc
Confidence 58999999999998888888888999999999999999 99999999999998777666555555543322 11223
Q ss_pred cceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEee
Q psy12137 80 ECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETK 158 (224)
Q Consensus 80 ~~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~ 158 (224)
+.+.+|+|.+++.|......+.|.++++..|..+|.+|-+||||+.++.++.+. -+++|.+.+.+.+|.|++.|.|.+.
T Consensus 215 ~~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~ 294 (362)
T KOG1013|consen 215 EDEERGAILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIG 294 (362)
T ss_pred chhhccceeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCC
Confidence 347899999999999999999999999999999999999999999999877655 6789999999999999999999999
Q ss_pred cCcccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCC
Q psy12137 159 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 220 (224)
Q Consensus 159 ~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~ 220 (224)
+.++....+.|.+||++..+..+.+|-+..+....++-.+||...+-.++..+..||-|...
T Consensus 295 pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~rr~~v~~h~gr~~~~~~a~~~~ss~l~~~ 356 (362)
T KOG1013|consen 295 PGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYRRGEVHKHWGRCLFDQDANFERSSGLETE 356 (362)
T ss_pred ccchhcceEEEeecccCCCcCccCCCcccccccccchhhcCccccccccccccccccccccc
Confidence 99999899999999999988899999999999999999999999999999999999999743
No 33
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.88 E-value=1.1e-21 Score=137.14 Aligned_cols=111 Identities=20% Similarity=0.228 Sum_probs=90.6
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEec---CCCCCeEeeeeeeCCCCCeeceEEEEEeecC-cccccEEEEEEEEC
Q psy12137 99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKP---DLHKRKYKTGVKWKTLNPIFNEEFAIETKIT-ELSKQTLVITVWDK 174 (224)
Q Consensus 99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~---~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~-~~~~~~l~i~v~~~ 174 (224)
+|+|.|++|++|+..+ .|.+||||++++.+ +...++++|+++.++.||+|||+|.|.+..+ .+....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 4899999999999876 48999999999863 1112567999999999999999999998754 45567899999999
Q ss_pred CCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCCC
Q psy12137 175 DYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL 222 (224)
Q Consensus 175 ~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~~ 222 (224)
+..+++++||++.|++.... ++.....|++|.+.-.
T Consensus 80 d~~~~dd~IG~~~l~l~~~~------------~~~~~~~w~~L~~~~~ 115 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIA------------QAGSCACWLPLGRRIH 115 (120)
T ss_pred cccCCCCEEEEEEEEHHHCc------------CCCcEEEEEECcCccc
Confidence 98888999999999988743 3445788999876543
No 34
>KOG0696|consensus
Probab=99.88 E-value=1.4e-22 Score=164.04 Aligned_cols=134 Identities=33% Similarity=0.587 Sum_probs=119.6
Q ss_pred CcccccCcccceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCee
Q psy12137 71 REEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIF 149 (224)
Q Consensus 71 ~~~~~~~~~~~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~ 149 (224)
..++.||.++++.+|.|.+.+.. ....|.|.|.+|+||.+++.+|.+||||++++.++.+. .+++|++++.++||+|
T Consensus 155 nVPslCG~DhtE~RGrl~l~~~~--~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~w 232 (683)
T KOG0696|consen 155 NVPSLCGTDHTERRGRLYLEAHI--KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVW 232 (683)
T ss_pred cCCcccCCcchhhcceEEEEEEe--cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccc
Confidence 46678999999999999888876 68899999999999999999999999999999987655 7889999999999999
Q ss_pred ceEEEEEeecCcccccEEEEEEEECCCCCCCceeEEEEEecCCCC-CccchhhhhhcCC
Q psy12137 150 NEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG-DRLRHWVDMMKYP 207 (224)
Q Consensus 150 ~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~-~~~~~w~~l~~~~ 207 (224)
||+|+|.+.+.+. +..|.|+|||+|+.++++++|...++++... .+..-||++++..
T Consensus 233 NEtftf~Lkp~Dk-drRlsiEvWDWDrTsRNDFMGslSFgisEl~K~p~~GWyKlLsqe 290 (683)
T KOG0696|consen 233 NETFTFKLKPSDK-DRRLSIEVWDWDRTSRNDFMGSLSFGISELQKAPVDGWYKLLSQE 290 (683)
T ss_pred cceeEEecccccc-cceeEEEEecccccccccccceecccHHHHhhcchhhHHHHhhhh
Confidence 9999999986654 4789999999999999999999999999754 6778899998744
No 35
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.87 E-value=1.5e-21 Score=138.82 Aligned_cols=107 Identities=24% Similarity=0.344 Sum_probs=89.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeec---CcccccEEEEEEEECCC
Q psy12137 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI---TELSKQTLVITVWDKDY 176 (224)
Q Consensus 100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~---~~~~~~~l~i~v~~~~~ 176 (224)
+.|+|++|+||+..+..|.+||||++++ ++.+++|++++++.||.|||.|.|.+.. .++....|.|.||+++.
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l----~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~ 76 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQL----GKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL 76 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEE----CCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc
Confidence 4799999999999888899999999998 5678899999999999999999999864 12456789999999999
Q ss_pred CCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCC
Q psy12137 177 GKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 220 (224)
Q Consensus 177 ~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~ 220 (224)
++++++||++.|++... ...++..+.+|++|.+.
T Consensus 77 ~~~d~~iG~~~i~l~~l----------~~~~~~~~~~W~~L~~~ 110 (126)
T cd08682 77 LGLDKFLGQVSIPLNDL----------DEDKGRRRTRWFKLESK 110 (126)
T ss_pred cCCCceeEEEEEEHHHh----------hccCCCcccEEEECcCC
Confidence 88899999999998752 22234556777777653
No 36
>KOG2059|consensus
Probab=99.87 E-value=9.7e-22 Score=166.61 Aligned_cols=193 Identities=23% Similarity=0.368 Sum_probs=154.2
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE 79 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 79 (224)
|+|.|.|+|+|.| .|+.. ...|.|.|||.| +++ +.||++.|.-+++..+++++-|+.|.+. +.
T Consensus 47 ksL~PF~gEe~~~-~iP~~---F~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L~~V-----------D~ 110 (800)
T KOG2059|consen 47 KSLCPFFGEEFYF-EIPRT---FRYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSLQPV-----------DP 110 (800)
T ss_pred hhcCCccccceEE-ecCcc---eeeEEEEEeccc-cccccccceeeeeHHHHhhCCCCccceecccc-----------CC
Confidence 6899999999999 79888 889999999999 998 9999999999999988899888888652 23
Q ss_pred cceeceEEEEEEEEeC--CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEe
Q psy12137 80 ECWQHGKIFLTLCFST--KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIET 157 (224)
Q Consensus 80 ~~~~~g~l~i~~~~~~--~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~ 157 (224)
..+..|+|++.+.+.. ....+.+.++++|++.+.. ++.+|||+++...++...+..+|++++++.+|.|+|.|.|.+
T Consensus 111 dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~ 189 (800)
T KOG2059|consen 111 DSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEV 189 (800)
T ss_pred ChhhceeEEEEEEeccccCCCcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeee
Confidence 3589999999988765 3456778888888876654 456999999998655433668999999999999999999997
Q ss_pred ecC-------------cccccEEEEEEEE-CCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCCC
Q psy12137 158 KIT-------------ELSKQTLVITVWD-KDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL 222 (224)
Q Consensus 158 ~~~-------------~~~~~~l~i~v~~-~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~~ 222 (224)
... +.....|.+.+|+ .+...+++|+|++.+++...- -...-+.|+.|+|.+.
T Consensus 190 ~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~------------~~s~p~~W~~Lqp~~~ 256 (800)
T KOG2059|consen 190 TREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLR------------QKSSPAAWYYLQPRPN 256 (800)
T ss_pred ccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhh------------hccCccceEEEecCCC
Confidence 544 0012468899998 445556899999999987521 1234568888888764
No 37
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.86 E-value=1.6e-20 Score=134.58 Aligned_cols=109 Identities=36% Similarity=0.485 Sum_probs=96.3
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCC---CCeEeeeeeeCCCCCeeceEEEEEeecC
Q psy12137 84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH---KRKYKTGVKWKTLNPIFNEEFAIETKIT 160 (224)
Q Consensus 84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~---~~~~~T~~~~~~~~p~~~e~f~f~~~~~ 160 (224)
.|+|.+++.|......|.|.|++|++|+..+..|.+||||++++.+... ...++|++++++.+|+|||+|.|.+...
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 81 (133)
T cd04009 2 YGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPE 81 (133)
T ss_pred ceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechh
Confidence 6999999999999999999999999999988888999999999875432 3688999999999999999999998542
Q ss_pred c--ccccEEEEEEEECCCCCCCceeEEEEEecCC
Q psy12137 161 E--LSKQTLVITVWDKDYGKSNDYLGCLELCCNS 192 (224)
Q Consensus 161 ~--~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~ 192 (224)
. .....|.|+|||++.++++++||++.+++++
T Consensus 82 ~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~ 115 (133)
T cd04009 82 QCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLND 115 (133)
T ss_pred hcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHH
Confidence 2 3356899999999999889999999999885
No 38
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.86 E-value=9.1e-21 Score=137.44 Aligned_cols=111 Identities=26% Similarity=0.389 Sum_probs=88.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEee-------------cCcccc
Q psy12137 99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETK-------------ITELSK 164 (224)
Q Consensus 99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~-------------~~~~~~ 164 (224)
+|.|.|++|++|+. .+|.+||||++++.+...+ .+++|++++++.||+|||+|.|.+. ..++..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 47899999999987 5689999999999765433 6789999999999999999999984 224445
Q ss_pred cEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCCC
Q psy12137 165 QTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL 222 (224)
Q Consensus 165 ~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~~ 222 (224)
..|.|.||+++.++++++||++.|++...... ......|++|.|...
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~-----------~~~~~~W~~L~~~~~ 125 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQ-----------AGSHQAWYFLQPREE 125 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEeccccccc-----------CCcCcceeecCCccc
Confidence 68999999999888899999999999874421 123466777766543
No 39
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.85 E-value=2.7e-20 Score=130.40 Aligned_cols=86 Identities=12% Similarity=0.218 Sum_probs=76.4
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeC-CCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137 98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWK-TLNPIFNEEFAIETKITELSKQTLVITVWDKDY 176 (224)
Q Consensus 98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~-~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~ 176 (224)
|.|.|+|++|++++..+ .|.+||||++.+ +.++++|+++.+ +.||.|||+|.|.+... ...|.|+|||++.
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~l----g~~~~kT~v~~~~~~nP~WNe~F~f~v~~~---~~~l~~~V~d~d~ 73 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRV----GHAVYETPTAYNGAKNPRWNKTIQCTLPEG---VDSIYIEIFDERA 73 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEE----CCEEEEeEEccCCCCCCccCeEEEEEecCC---CcEEEEEEEeCCC
Confidence 68999999999988766 689999999999 667889999876 79999999999998532 3579999999999
Q ss_pred CCCCceeEEEEEecC
Q psy12137 177 GKSNDYLGCLELCCN 191 (224)
Q Consensus 177 ~~~~~~lG~~~l~l~ 191 (224)
+++|++||.+.+++.
T Consensus 74 ~~~dd~iG~~~i~l~ 88 (121)
T cd04016 74 FTMDERIAWTHITIP 88 (121)
T ss_pred CcCCceEEEEEEECc
Confidence 999999999999995
No 40
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.85 E-value=3.6e-20 Score=131.14 Aligned_cols=112 Identities=33% Similarity=0.482 Sum_probs=96.9
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEE-eecCc
Q psy12137 84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIE-TKITE 161 (224)
Q Consensus 84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~-~~~~~ 161 (224)
.|+|.+++.|.+..+.|.|.|++|++|+..+..+.+||||++.+.+...+ ...+|++++++.+|.|||.|.|. +...+
T Consensus 1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~ 80 (123)
T cd04035 1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEED 80 (123)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHH
Confidence 48999999999999999999999999998887889999999998755433 67899999999999999999996 54344
Q ss_pred ccccEEEEEEEECCCCCCCceeEEEEEecCCCCCc
Q psy12137 162 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDR 196 (224)
Q Consensus 162 ~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~ 196 (224)
+....|.|+|||++.+ ++++||++.++++.....
T Consensus 81 ~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~ 114 (123)
T cd04035 81 IQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPN 114 (123)
T ss_pred hCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCC
Confidence 5557899999999988 789999999999875533
No 41
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.85 E-value=1.6e-20 Score=130.29 Aligned_cols=107 Identities=28% Similarity=0.357 Sum_probs=90.1
Q ss_pred EEEEEEEeecCCCCCC-CCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCee-ceEEEEEeecCcccccEEEEEEEECCCC
Q psy12137 100 LIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIF-NEEFAIETKITELSKQTLVITVWDKDYG 177 (224)
Q Consensus 100 l~v~i~~a~~L~~~~~-~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~-~e~f~f~~~~~~~~~~~l~i~v~~~~~~ 177 (224)
|.|+|++|++|+.++. .|.+||||++++ +...++|++++++.+|.| ||+|.|.++...+....|.|+|||++.+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~----~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~ 76 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKF----GSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTY 76 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEE----CCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCC
Confidence 5799999999998874 688999999998 458889999999999999 9999999976666667999999999999
Q ss_pred CCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCC
Q psy12137 178 KSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 219 (224)
Q Consensus 178 ~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~ 219 (224)
+++++||++.+++...... .+...+.+|++|..
T Consensus 77 ~~~~~iG~~~~~l~~l~~~---------~~~~~~~~w~~l~~ 109 (110)
T cd08688 77 SANDAIGKVYIDLNPLLLK---------DSVSQISGWFPIYD 109 (110)
T ss_pred CCCCceEEEEEeHHHhccc---------CCccccCCeEEccc
Confidence 8999999999999763210 23445888888864
No 42
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.84 E-value=5.1e-20 Score=126.69 Aligned_cols=103 Identities=29% Similarity=0.337 Sum_probs=89.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCC
Q psy12137 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 179 (224)
Q Consensus 100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~ 179 (224)
|.|+|++|++|+..+..+.+||||++++ +++.++|++++++.+|.|||.|.|.+.. .....|.|+||+++.
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~----~~~~~kT~v~~~t~nP~Wne~f~f~v~~--~~~~~l~v~v~d~~~--- 72 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTV----GKTTQKSKVKERTNNPVWEEGFTFLVRN--PENQELEIEVKDDKT--- 72 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEE----CCEEEeCccccCCCCCcccceEEEEeCC--CCCCEEEEEEEECCC---
Confidence 7899999999999888889999999999 5688899999999999999999999853 334689999999875
Q ss_pred CceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCC
Q psy12137 180 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP 221 (224)
Q Consensus 180 ~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~ 221 (224)
+++||++.+++.. +...++..+.+||+|.+++
T Consensus 73 ~~~iG~~~i~l~~----------l~~~~~~~~~~w~~L~~~g 104 (105)
T cd04050 73 GKSLGSLTLPLSE----------LLKEPDLTLDQPFPLDNSG 104 (105)
T ss_pred CCccEEEEEEHHH----------hhccccceeeeeEecCCCC
Confidence 7899999999865 4555667899999998775
No 43
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.84 E-value=6.8e-20 Score=129.21 Aligned_cols=101 Identities=17% Similarity=0.183 Sum_probs=84.3
Q ss_pred EEEEEEEeec---CCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137 100 LIVNLIKCTN---LIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 176 (224)
Q Consensus 100 l~v~i~~a~~---L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~ 176 (224)
|.|+|++|++ |+..+..|.+||||++++ +.++.+|++++++.||+|||+|.|.+.. . ...|.|+|||++.
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~----g~~~~rTk~~~~~~nP~WnE~f~f~v~~--~-~~~l~v~V~d~d~ 74 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKY----GPKWVRTRTVEDSSNPRWNEQYTWPVYD--P-CTVLTVGVFDNSQ 74 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEE----CCEEeEcCcccCCCCCcceeEEEEEecC--C-CCEEEEEEEECCC
Confidence 7899999999 788888899999999998 6678899999999999999999999843 2 3589999999987
Q ss_pred C------CCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCC
Q psy12137 177 G------KSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 219 (224)
Q Consensus 177 ~------~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~ 219 (224)
+ +++++||++.+++.+.. .+..+..|++|.+
T Consensus 75 ~~~~~~~~~dd~lG~~~i~l~~l~------------~~~~~~~~~~L~~ 111 (126)
T cd08379 75 SHWKEAVQPDVLIGKVRIRLSTLE------------DDRVYAHSYPLLS 111 (126)
T ss_pred ccccccCCCCceEEEEEEEHHHcc------------CCCEEeeEEEeEe
Confidence 6 37999999999988643 2335566666663
No 44
>KOG1028|consensus
Probab=99.83 E-value=8.3e-20 Score=153.27 Aligned_cols=113 Identities=36% Similarity=0.555 Sum_probs=105.9
Q ss_pred ceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecC
Q psy12137 81 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT 160 (224)
Q Consensus 81 ~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~ 160 (224)
....|+|++++.|......|.|.|++|++|+..+..|.+||||++++.++. +.+++|++++++.||.|||+|.|.++..
T Consensus 150 ~~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk-~~k~kT~v~r~tlnP~fnEtf~f~v~~~ 228 (421)
T KOG1028|consen 150 VKAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDK-KGKFKTRVHRKTLNPVFNETFRFEVPYE 228 (421)
T ss_pred ceeeeeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCC-CCcceeeeeecCcCCccccceEeecCHH
Confidence 478899999999999999999999999999999977789999999999876 7899999999999999999999999888
Q ss_pred cccccEEEEEEEECCCCCCCceeEEEEEecCCCC
Q psy12137 161 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG 194 (224)
Q Consensus 161 ~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~ 194 (224)
++....|.++||++|+++++++||++.++|....
T Consensus 229 ~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~ 262 (421)
T KOG1028|consen 229 ELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVD 262 (421)
T ss_pred HhccCEEEEEEEecCCcccccEEEEEEecCcccc
Confidence 8999999999999999999999999999987643
No 45
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.83 E-value=9.8e-20 Score=130.29 Aligned_cols=107 Identities=40% Similarity=0.692 Sum_probs=92.6
Q ss_pred ceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcc
Q psy12137 84 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 162 (224)
Q Consensus 84 ~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~ 162 (224)
+|+|.+++.|.. +.|.|.|++|++|+..+..+.+||||++.+.+.... ..++|++++++.+|.|||+|.|.+...+
T Consensus 1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~- 77 (131)
T cd04026 1 RGRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD- 77 (131)
T ss_pred CcEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchh-
Confidence 589999999986 999999999999998888889999999998654333 7889999999999999999999985433
Q ss_pred cccEEEEEEEECCCCCCCceeEEEEEecCCC
Q psy12137 163 SKQTLVITVWDKDYGKSNDYLGCLELCCNSK 193 (224)
Q Consensus 163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~ 193 (224)
....|.|+||+++..+++++||++.+++...
T Consensus 78 ~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l 108 (131)
T cd04026 78 KDRRLSIEVWDWDRTTRNDFMGSLSFGVSEL 108 (131)
T ss_pred cCCEEEEEEEECCCCCCcceeEEEEEeHHHh
Confidence 2468999999999888899999999998764
No 46
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.82 E-value=2e-19 Score=131.03 Aligned_cols=89 Identities=26% Similarity=0.330 Sum_probs=78.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeC-CCCCeeceEEEEEeecCcccccEEEEEEEECCCC
Q psy12137 99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWK-TLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 177 (224)
Q Consensus 99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~-~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~ 177 (224)
.|.|+|++|++|+..+..|.+||||++++ +.+..+|++..+ +.||.|||.|.|.+. +.....|.|.||+++..
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l----~~~~~kTk~~~~~t~nP~WNE~F~f~v~--~~~~~~l~v~V~d~~~~ 74 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQL----GNQVLRTRPSQTRNGNPSWNEELMFVAA--EPFEDHLILSVEDRVGP 74 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEE----CCEEeeeEeccCCCCCCcccCcEEEEec--CccCCeEEEEEEEecCC
Confidence 37899999999999998999999999999 567889998866 699999999999984 33446899999999988
Q ss_pred CCCceeEEEEEecCCC
Q psy12137 178 KSNDYLGCLELCCNSK 193 (224)
Q Consensus 178 ~~~~~lG~~~l~l~~~ 193 (224)
+++++||++.|+++..
T Consensus 75 ~~dd~lG~v~i~L~~l 90 (150)
T cd04019 75 NKDEPLGRAVIPLNDI 90 (150)
T ss_pred CCCCeEEEEEEEHHHC
Confidence 8899999999999874
No 47
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.82 E-value=4.8e-19 Score=124.05 Aligned_cols=89 Identities=40% Similarity=0.643 Sum_probs=79.0
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCC
Q psy12137 99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 178 (224)
Q Consensus 99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~ 178 (224)
.++|.|++|++|+..+..+.+||||++++ ++...+|++++++.+|.|||+|.|.+.. .....|.|+|||++..+
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~----~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~~l~v~v~d~~~~~ 74 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRL----GNEKYKSKVCSKTLNPQWLEQFDLHLFD--DQSQILEIEVWDKDTGK 74 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEE----CCEeEecccccCCCCCceeEEEEEEecC--CCCCEEEEEEEECCCCC
Confidence 37899999999999988889999999998 5577899999999999999999999853 33578999999999988
Q ss_pred CCceeEEEEEecCCC
Q psy12137 179 SNDYLGCLELCCNSK 193 (224)
Q Consensus 179 ~~~~lG~~~l~l~~~ 193 (224)
++++||++.+++...
T Consensus 75 ~~~~iG~~~~~l~~l 89 (116)
T cd08376 75 KDEFIGRCEIDLSAL 89 (116)
T ss_pred CCCeEEEEEEeHHHC
Confidence 899999999998763
No 48
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.82 E-value=2.5e-19 Score=127.50 Aligned_cols=91 Identities=26% Similarity=0.477 Sum_probs=78.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeec-CcccccEEEEEEEECCCC
Q psy12137 99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI-TELSKQTLVITVWDKDYG 177 (224)
Q Consensus 99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~-~~~~~~~l~i~v~~~~~~ 177 (224)
+|.|.|++|++|+..+..|.+||||++++ +.++++|++++++.||.|||.|.|.+.. ..+....|.|+||+++.+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~----~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~ 76 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDF----DGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRS 76 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEE----CCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCC
Confidence 47999999999999888889999999998 5577899999999999999999999853 223346899999999887
Q ss_pred C-CCceeEEEEEecCCC
Q psy12137 178 K-SNDYLGCLELCCNSK 193 (224)
Q Consensus 178 ~-~~~~lG~~~l~l~~~ 193 (224)
+ ++++||++.+++...
T Consensus 77 ~~~d~~lG~v~i~l~~l 93 (127)
T cd04022 77 GRRRSFLGRVRISGTSF 93 (127)
T ss_pred cCCCCeeeEEEEcHHHc
Confidence 6 789999999999863
No 49
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.81 E-value=3.3e-19 Score=123.83 Aligned_cols=94 Identities=28% Similarity=0.440 Sum_probs=81.3
Q ss_pred CEEEEEEEEeecCCCCCCC-CCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcc-cccEEEEEEEECC
Q psy12137 98 RALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITEL-SKQTLVITVWDKD 175 (224)
Q Consensus 98 ~~l~v~i~~a~~L~~~~~~-g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~-~~~~l~i~v~~~~ 175 (224)
|.|.|.|++|++|+..+.. +.+||||++++.+. ++..++|++++++.||.|||.|.|.+...++ ....|.|+|||++
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~-~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKF-GKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccC-CCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence 5799999999999998887 89999999998543 2467899999999999999999998754433 3468999999999
Q ss_pred CCCCCceeEEEEEecCC
Q psy12137 176 YGKSNDYLGCLELCCNS 192 (224)
Q Consensus 176 ~~~~~~~lG~~~l~l~~ 192 (224)
.++++++||++.+++..
T Consensus 80 ~~~~dd~lG~~~i~l~~ 96 (111)
T cd04041 80 RFTADDRLGRVEIDLKE 96 (111)
T ss_pred CCCCCCcceEEEEEHHH
Confidence 99899999999999876
No 50
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.80 E-value=1e-18 Score=123.69 Aligned_cols=89 Identities=30% Similarity=0.535 Sum_probs=78.8
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCC
Q psy12137 99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 178 (224)
Q Consensus 99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~ 178 (224)
+|+|+|++|++|+..+..+.+||||++++ +....+|++++++.+|.|||+|.|.+... ....|.|+|||++..+
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~----~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~~l~~~v~d~~~~~ 74 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFY----NGQTLETSVVKKSCYPRWNEVFEFELMEG--ADSPLSVEVWDWDLVS 74 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEE----CCEEEeceeecCCCCCccCcEEEEEcCCC--CCCEEEEEEEECCCCC
Confidence 58999999999999888889999999998 45678999999999999999999998532 2468999999999988
Q ss_pred CCceeEEEEEecCCC
Q psy12137 179 SNDYLGCLELCCNSK 193 (224)
Q Consensus 179 ~~~~lG~~~l~l~~~ 193 (224)
++++||++.+++...
T Consensus 75 ~~~~iG~~~~~l~~l 89 (123)
T cd04025 75 KNDFLGKVVFSIQTL 89 (123)
T ss_pred CCcEeEEEEEEHHHc
Confidence 899999999998764
No 51
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.80 E-value=7.8e-19 Score=121.04 Aligned_cols=90 Identities=29% Similarity=0.416 Sum_probs=77.8
Q ss_pred CEEEEEEEEeecCCCCCCC----CCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEE
Q psy12137 98 RALIVNLIKCTNLIPMDSN----GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD 173 (224)
Q Consensus 98 ~~l~v~i~~a~~L~~~~~~----g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~ 173 (224)
|.|.|+|++|++|+..+.. +.+||||++++ ++..++|++++++.||.|||.|.|.+..... ...|.|+|||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~----~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~-~~~L~~~V~D 75 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISF----GRRVFRTSWRRHTLNPVFNERLAFEVYPHEK-NFDIQFKVLD 75 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEE----CCEeEeeeeecCCCCCcccceEEEEEeCccC-CCEEEEEEEE
Confidence 5799999999999987532 35899999998 5677899999999999999999999854332 3589999999
Q ss_pred CCCCCCCceeEEEEEecCC
Q psy12137 174 KDYGKSNDYLGCLELCCNS 192 (224)
Q Consensus 174 ~~~~~~~~~lG~~~l~l~~ 192 (224)
++.++++++||++.++|+.
T Consensus 76 ~d~~~~dd~IG~~~l~L~~ 94 (108)
T cd04039 76 KDKFSFNDYVATGSLSVQE 94 (108)
T ss_pred CCCCCCCcceEEEEEEHHH
Confidence 9999999999999999986
No 52
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.80 E-value=1.5e-18 Score=122.21 Aligned_cols=103 Identities=20% Similarity=0.291 Sum_probs=84.8
Q ss_pred EEEEEEEeecCCCCC-CCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCC
Q psy12137 100 LIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 178 (224)
Q Consensus 100 l~v~i~~a~~L~~~~-~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~ 178 (224)
|.|.|++|+||+..+ ..|.+||||++++. +....+|++++++.+|.|||.|.|.++.. ...|.|.||+++.++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~---~~~~~kT~v~~kt~~P~WnE~F~f~v~~~---~~~l~~~v~d~~~~~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD---QEEVFRTKTVEKSLCPFFGEDFYFEIPRT---FRHLSFYIYDRDVLR 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEEC---CccEEEeeEEECCCCCccCCeEEEEcCCC---CCEEEEEEEECCCCC
Confidence 678999999999874 45789999999982 22578999999999999999999999632 368999999999998
Q ss_pred CCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCC
Q psy12137 179 SNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 220 (224)
Q Consensus 179 ~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~ 220 (224)
++++||++.++++.... +.....|++|+|.
T Consensus 76 ~~~~iG~~~i~l~~l~~------------~~~~~~w~~L~~~ 105 (121)
T cd08401 76 RDSVIGKVAIKKEDLHK------------YYGKDTWFPLQPV 105 (121)
T ss_pred CCceEEEEEEEHHHccC------------CCCcEeeEEEEcc
Confidence 99999999999876431 3346778887764
No 53
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.80 E-value=1.5e-18 Score=124.54 Aligned_cols=111 Identities=29% Similarity=0.380 Sum_probs=91.0
Q ss_pred CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECC
Q psy12137 96 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 175 (224)
Q Consensus 96 ~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~ 175 (224)
..|.|.|.|++|++|+..+..|.+||||++++ +...++|++++++.||.|||+|.|.+. ++....|.|+|||++
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~----~~~~~kT~vi~~t~nP~Wne~f~f~v~--~~~~~~l~i~V~D~d 86 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSM----GSQEHKTKVVSDTLNPKWNSSMQFFVK--DLEQDVLCITVFDRD 86 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEE----CCEeeeccccCCCCCCccCceEEEEec--CccCCEEEEEEEECC
Confidence 46889999999999999988899999999998 567899999999999999999999984 444578999999999
Q ss_pred CCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCC
Q psy12137 176 YGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 219 (224)
Q Consensus 176 ~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~ 219 (224)
.++++++||++.+++.+.-... ...+..+.+|+.|..
T Consensus 87 ~~~~d~~lG~~~i~l~~l~~~~-------~~~~~~~~~~~~~~~ 123 (136)
T cd08375 87 FFSPDDFLGRTEIRVADILKET-------KESKGPITKRLLLHE 123 (136)
T ss_pred CCCCCCeeEEEEEEHHHhcccc-------ccCCCcEEEEecccc
Confidence 9888999999999987632110 112345677777753
No 54
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.80 E-value=1.7e-18 Score=121.81 Aligned_cols=105 Identities=26% Similarity=0.368 Sum_probs=86.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCC
Q psy12137 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 179 (224)
Q Consensus 100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~ 179 (224)
|.|.|++|++|+..+..+.+||||++++.+. +..+++|++++++.||.|||+|.|.+... ....|.|+|||++.+ +
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~-~~~~~kT~vv~~t~nP~Wne~f~f~i~~~--~~~~l~v~v~d~d~~-~ 77 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTA-SDEKKRTKTIKNSINPVWNETFEFRIQSQ--VKNVLELTVMDEDYV-M 77 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCC-CCccCccceecCCCCCccceEEEEEeCcc--cCCEEEEEEEECCCC-C
Confidence 6899999999999887889999999998432 23678999999999999999999998543 345799999999988 8
Q ss_pred CceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCC
Q psy12137 180 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 220 (224)
Q Consensus 180 ~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~ 220 (224)
+++||++.++++... ++..+..|++|.+.
T Consensus 78 ~~~iG~~~~~l~~l~------------~g~~~~~~~~L~~~ 106 (119)
T cd04036 78 DDHLGTVLFDVSKLK------------LGEKVRVTFSLNPQ 106 (119)
T ss_pred CcccEEEEEEHHHCC------------CCCcEEEEEECCCC
Confidence 899999999997643 24466777777664
No 55
>KOG1030|consensus
Probab=99.80 E-value=7.5e-19 Score=126.17 Aligned_cols=98 Identities=33% Similarity=0.396 Sum_probs=86.1
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137 97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 176 (224)
Q Consensus 97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~ 176 (224)
.|-|.|.|++|.||...|..+.+||||.+.+ ++++.+|++..++.||+|||.|.|.+. ++ ...|+++|||+|.
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~l----g~q~lkT~~v~~n~NPeWNe~ltf~v~--d~-~~~lkv~VyD~D~ 77 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLEL----GNQKLKTRVVYKNLNPEWNEELTFTVK--DP-NTPLKVTVYDKDT 77 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEE----CCeeeeeeeecCCCCCcccceEEEEec--CC-CceEEEEEEeCCC
Confidence 4678999999999998887789999999999 789999999999999999999999995 33 4799999999999
Q ss_pred CCCCceeEEEEEecCCCCCccchhh
Q psy12137 177 GKSNDYLGCLELCCNSKGDRLRHWV 201 (224)
Q Consensus 177 ~~~~~~lG~~~l~l~~~~~~~~~w~ 201 (224)
+++|++||.++|++...-.....|+
T Consensus 78 fs~dD~mG~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 78 FSSDDFMGEATIPLKPLLEAQKMDY 102 (168)
T ss_pred CCcccccceeeeccHHHHHHhhhhc
Confidence 9999999999999986444444444
No 56
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.79 E-value=2.9e-18 Score=123.33 Aligned_cols=110 Identities=29% Similarity=0.444 Sum_probs=89.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecC-------------cccccE
Q psy12137 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT-------------ELSKQT 166 (224)
Q Consensus 100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~-------------~~~~~~ 166 (224)
|.|.|++|++|+.. ..|.+||||++++..+.....++|++++++.+|.|||+|.|.+... ++....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57899999999988 7789999999998644325788999999999999999999997542 235678
Q ss_pred EEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCCC
Q psy12137 167 LVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL 222 (224)
Q Consensus 167 l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~~ 222 (224)
|.|+|||++.++++++||++.+++.... .......|++|.|...
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~------------~~~~~~~W~~L~~~~~ 123 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQ------------QAGSHQAWYFLQPREA 123 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhcc------------CCCcccceEecCCcCC
Confidence 9999999998888999999999987632 2335677888877653
No 57
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.79 E-value=2e-18 Score=119.97 Aligned_cols=105 Identities=25% Similarity=0.285 Sum_probs=85.6
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeec--CcccccEEEEEEEEC
Q psy12137 97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI--TELSKQTLVITVWDK 174 (224)
Q Consensus 97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~--~~~~~~~l~i~v~~~ 174 (224)
...|.|.|++|++|+ .|.+||||++++ +.++++|++++++.+|.|||.|.|.+.. .++.+..|.|+|||+
T Consensus 3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~----~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~ 74 (111)
T cd04011 3 DFQVRVRVIEARQLV----GGNIDPVVKVEV----GGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDS 74 (111)
T ss_pred cEEEEEEEEEcccCC----CCCCCCEEEEEE----CCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcC
Confidence 467899999999998 568999999999 4567899999999999999999999632 234456899999999
Q ss_pred CCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecC
Q psy12137 175 DYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 218 (224)
Q Consensus 175 ~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~ 218 (224)
+.++++++||++.++++....+. ....+.+|++|.
T Consensus 75 ~~~~~~~~iG~~~i~l~~v~~~~---------~~~~~~~w~~L~ 109 (111)
T cd04011 75 RSLRSDTLIGSFKLDVGTVYDQP---------DHAFLRKWLLLT 109 (111)
T ss_pred cccccCCccEEEEECCccccCCC---------CCcceEEEEEee
Confidence 99888999999999998742211 124678899886
No 58
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.79 E-value=4.5e-18 Score=120.39 Aligned_cols=117 Identities=26% Similarity=0.320 Sum_probs=93.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCC
Q psy12137 99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 178 (224)
Q Consensus 99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~ 178 (224)
.|+|.|++|++|+..+..|.+||||++++.+. ....+|.+++++.+|.|||+|.|.+. ......|.|+|||++.++
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~--~~~~kT~~v~~t~nP~Wne~f~f~~~--~~~~~~L~~~V~d~d~~~ 76 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKK--KINDRDNYIPNTLNPVFGKMFELEAT--LPGNSILKISVMDYDLLG 76 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCe--eccceeeEEECCCCCccceEEEEEec--CCCCCEEEEEEEECCCCC
Confidence 37899999999999988899999999998311 13467888889999999999999873 233568999999999998
Q ss_pred CCceeEEEEEecCCCCCccchhhhhhcCCCce----eEeeeecCCC
Q psy12137 179 SNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK----HEGIHNLSIK 220 (224)
Q Consensus 179 ~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~----~~~wh~l~~~ 220 (224)
++++||++.+++.+... ..||+.+...+... +..||-|.|.
T Consensus 77 ~dd~iG~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (124)
T cd04037 77 SDDLIGETVIDLEDRFF-SKHRATCGLPPTYEESGPNQWRDSLKPS 121 (124)
T ss_pred CCceeEEEEEeeccccc-chHHHhccCCCcccccCceecCcccCcc
Confidence 99999999999987654 67898887766543 4455555554
No 59
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.79 E-value=4.6e-18 Score=119.96 Aligned_cols=101 Identities=28% Similarity=0.480 Sum_probs=83.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCC
Q psy12137 99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 178 (224)
Q Consensus 99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~ 178 (224)
+|.|.|++|++|+..+..|.+||||++++. ++..++|++++++.+|.|||.|.|.+. .+ ...|.|+|||++..+
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~---~~~~~kT~~~~~t~nP~Wne~f~f~v~--~~-~~~l~~~v~D~d~~~ 74 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYG---GKTVYKSKTIYKNLNPVWDEKFTLPIE--DV-TQPLYIKVFDYDRGL 74 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEEC---CEEEEEeeeccCCCCCccceeEEEEec--CC-CCeEEEEEEeCCCCC
Confidence 478999999999999888999999999983 236789999999999999999999984 33 368999999999998
Q ss_pred CCceeEEEEEecCCC--CCccchhhhhhc
Q psy12137 179 SNDYLGCLELCCNSK--GDRLRHWVDMMK 205 (224)
Q Consensus 179 ~~~~lG~~~l~l~~~--~~~~~~w~~l~~ 205 (224)
++++||++.+++... +...+.|+.|.+
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~~~~~~~L~~ 103 (121)
T cd04042 75 TDDFMGSAFVDLSTLELNKPTEVKLKLED 103 (121)
T ss_pred CCcceEEEEEEHHHcCCCCCeEEEEECCC
Confidence 999999999999863 333444555543
No 60
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.79 E-value=1e-18 Score=126.91 Aligned_cols=107 Identities=22% Similarity=0.346 Sum_probs=86.5
Q ss_pred EEEEEEEEeecCCCCCCC--------------CCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccc
Q psy12137 99 ALIVNLIKCTNLIPMDSN--------------GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSK 164 (224)
Q Consensus 99 ~l~v~i~~a~~L~~~~~~--------------g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~ 164 (224)
.|.|+|++|++|+.++.. +.+||||++.+ +.++.+|++++++.||+|||+|.|.+..... .
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~----~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~-~ 75 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSF----AGQKVKTSVKKNSYNPEWNEQIVFPEMFPPL-C 75 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEE----CCEeeecceEcCCCCCCcceEEEEEeeCCCc-C
Confidence 378999999999998744 36899999998 5567799999999999999999999643333 3
Q ss_pred cEEEEEEEECCCCCCCceeEEEEEecCCCC-Ccc--------chhhhhhcCCCce
Q psy12137 165 QTLVITVWDKDYGKSNDYLGCLELCCNSKG-DRL--------RHWVDMMKYPDHK 210 (224)
Q Consensus 165 ~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~-~~~--------~~w~~l~~~~~~~ 210 (224)
..|.|+|||++..+++++||++.+++.... .+. .+|+.|...|+..
T Consensus 76 ~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~~ 130 (151)
T cd04018 76 ERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPREY 130 (151)
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCcccc
Confidence 689999999999989999999999988532 222 4677777776654
No 61
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.78 E-value=2.4e-18 Score=120.83 Aligned_cols=101 Identities=24% Similarity=0.351 Sum_probs=83.3
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeee-CCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137 98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKW-KTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 176 (224)
Q Consensus 98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~-~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~ 176 (224)
|.|.|.|++|++|+..+..+.+||||++++ +...++|+++. .+.||.|||.|.|.+... ....|.|+|||++.
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~----~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~ 74 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRI----GGVTKKTKTDFRGGQHPEWDEELRFEITED--KKPILKVAVFDDDK 74 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEE----CCCccccccccCCCCCCccCceEEEEecCC--CCCEEEEEEEeCCC
Confidence 579999999999999888899999999998 45677888765 478999999999998643 34689999999988
Q ss_pred CCCCceeEEEEEecCCC--CCccchhhhhhc
Q psy12137 177 GKSNDYLGCLELCCNSK--GDRLRHWVDMMK 205 (224)
Q Consensus 177 ~~~~~~lG~~~l~l~~~--~~~~~~w~~l~~ 205 (224)
.+ +++||++.+++... +....+|++|..
T Consensus 75 ~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~ 104 (118)
T cd08681 75 RK-PDLIGDTEVDLSPALKEGEFDDWYELTL 104 (118)
T ss_pred CC-CcceEEEEEecHHHhhcCCCCCcEEecc
Confidence 76 88999999999852 344567777654
No 62
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.78 E-value=4.7e-18 Score=118.58 Aligned_cols=84 Identities=20% Similarity=0.235 Sum_probs=71.4
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137 97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 176 (224)
Q Consensus 97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~ 176 (224)
++.|.|+|++||+|+..+ ..||||++++ ++++.+|++.++ .||.|||.|.|.+. ... ..|.|+|||++.
T Consensus 1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~----g~~k~kT~v~~~-~nP~WnE~F~F~~~--~~~-~~L~v~V~dkd~ 69 (127)
T cd08394 1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKV----QNVKSTTIAVRG-SQPCWEQDFMFEIN--RLD-LGLVIELWNKGL 69 (127)
T ss_pred CceEEEEEEEeeCCCCCC---CCCCeEEEEE----CCEEeEeeECCC-CCCceeeEEEEEEc--CCC-CEEEEEEEeCCC
Confidence 368999999999996543 4589999999 667889999877 49999999999984 333 459999999997
Q ss_pred CCCCceeEEEEEecCC
Q psy12137 177 GKSNDYLGCLELCCNS 192 (224)
Q Consensus 177 ~~~~~~lG~~~l~l~~ 192 (224)
+ +|++||++.|+|++
T Consensus 70 ~-~DD~lG~v~i~L~~ 84 (127)
T cd08394 70 I-WDTLVGTVWIPLST 84 (127)
T ss_pred c-CCCceEEEEEEhHH
Confidence 6 79999999999986
No 63
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.78 E-value=8.3e-18 Score=120.85 Aligned_cols=111 Identities=19% Similarity=0.252 Sum_probs=86.0
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeec-----Cccc--ccEEEEE
Q psy12137 98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI-----TELS--KQTLVIT 170 (224)
Q Consensus 98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~-----~~~~--~~~l~i~ 170 (224)
.+|.|.|++|++|+..+..|.+||||++.+ +..+++|++++++.||.|||.|.|.+.. ..+. ...|.|+
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~----~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~ 76 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSF----LNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVE 76 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEE----CCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEE
Confidence 368999999999999998999999999998 4578899999999999999999998421 1111 2478999
Q ss_pred EEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCC
Q psy12137 171 VWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 220 (224)
Q Consensus 171 v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~ 220 (224)
|||++..+++++||++.+........ ..++....+||+|...
T Consensus 77 V~d~d~~~~d~~iG~~~i~~~~~~~~--------~~~~~~~~~W~~L~~~ 118 (135)
T cd04017 77 LFDQDSVGKDEFLGRSVAKPLVKLDL--------EEDFPPKLQWFPIYKG 118 (135)
T ss_pred EEeCcCCCCCccceEEEeeeeeeccc--------CCCCCCCceEEEeecC
Confidence 99999988999999999743211100 0145677888888743
No 64
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.78 E-value=6e-18 Score=120.50 Aligned_cols=89 Identities=29% Similarity=0.441 Sum_probs=79.4
Q ss_pred CEEEEEEEEeecCCCCCC--CCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECC
Q psy12137 98 RALIVNLIKCTNLIPMDS--NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 175 (224)
Q Consensus 98 ~~l~v~i~~a~~L~~~~~--~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~ 175 (224)
|.|.|.|++|++|+..+. .+.+||||++++ +....+|++++++.+|.|||.|.|.+.. .....|.|+|||++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~----~~~~~kT~~~~~t~~P~Wne~f~~~~~~--~~~~~l~i~v~d~~ 74 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSV----GAQRFKTQTIPNTLNPKWNYWCEFPIFS--AQNQLLKLILWDKD 74 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEE----CCEEEecceecCCcCCccCCcEEEEecC--CCCCEEEEEEEECC
Confidence 578999999999998887 789999999998 5678899999999999999999999853 34578999999999
Q ss_pred CCCCCceeEEEEEecCC
Q psy12137 176 YGKSNDYLGCLELCCNS 192 (224)
Q Consensus 176 ~~~~~~~lG~~~l~l~~ 192 (224)
..+++++||++.+++..
T Consensus 75 ~~~~~~~lG~~~i~l~~ 91 (128)
T cd04024 75 RFAGKDYLGEFDIALEE 91 (128)
T ss_pred CCCCCCcceEEEEEHHH
Confidence 98889999999999876
No 65
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.77 E-value=7e-18 Score=118.65 Aligned_cols=101 Identities=32% Similarity=0.499 Sum_probs=85.8
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCC
Q psy12137 98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 177 (224)
Q Consensus 98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~ 177 (224)
|.|.|+|++|++|+..+..+.+||||++++ +....+|++++++.+|.|+|+|.|.+. +. ...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~----~~~~~~T~~~~~t~nP~W~e~f~~~~~--~~-~~~l~~~v~d~~~~ 73 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLEL----VNARLQTHTIYKTLNPEWNKIFTFPIK--DI-HDVLEVTVYDEDKD 73 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEE----CCEeeecceecCCcCCccCcEEEEEec--Cc-CCEEEEEEEECCCC
Confidence 578999999999999888889999999998 455679999999999999999999984 22 36899999999988
Q ss_pred CCCceeEEEEEecCCCCCccchhhhhhc
Q psy12137 178 KSNDYLGCLELCCNSKGDRLRHWVDMMK 205 (224)
Q Consensus 178 ~~~~~lG~~~l~l~~~~~~~~~w~~l~~ 205 (224)
+++++||++.+++.....+..+|+.+..
T Consensus 74 ~~~~~iG~~~~~l~~~~~~~~~~~~l~~ 101 (119)
T cd08377 74 KKPEFLGKVAIPLLSIKNGERKWYALKD 101 (119)
T ss_pred CCCceeeEEEEEHHHCCCCCceEEECcc
Confidence 8899999999999876555556666654
No 66
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.77 E-value=6.8e-18 Score=119.00 Aligned_cols=103 Identities=26% Similarity=0.389 Sum_probs=83.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCC
Q psy12137 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 179 (224)
Q Consensus 100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~ 179 (224)
|.|+|++|++|+..+..|.+||||++++. +....+|++++++.+|.|||.|.|.+... ...|.|.||+++.+++
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~---~~~~~kT~v~~~t~nP~Wne~f~~~~~~~---~~~l~v~v~d~~~~~~ 75 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD---NEVIIRTATVWKTLNPFWGEEYTVHLPPG---FHTVSFYVLDEDTLSR 75 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEEC---CEeeeeeeeEcCCCCCcccceEEEeeCCC---CCEEEEEEEECCCCCC
Confidence 78999999999999988999999999982 22457999999999999999999998532 3689999999999989
Q ss_pred CceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCC
Q psy12137 180 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 219 (224)
Q Consensus 180 ~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~ 219 (224)
+++||++.++++.. . ..+..++.|++|.+
T Consensus 76 d~~iG~~~~~~~~~----------~-~~~~~~~~W~~L~~ 104 (121)
T cd04054 76 DDVIGKVSLTREVI----------S-AHPRGIDGWMNLTE 104 (121)
T ss_pred CCEEEEEEEcHHHh----------c-cCCCCCCcEEECee
Confidence 99999999997542 1 12224566777765
No 67
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.76 E-value=1.7e-17 Score=120.03 Aligned_cols=112 Identities=27% Similarity=0.270 Sum_probs=90.2
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCC
Q psy12137 98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 177 (224)
Q Consensus 98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~ 177 (224)
|.|.|.|++|++|+..+. +.+||||++++ +.+.++|++++++.||.|||.|.|.+.. . ...|.|+|||++.+
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~----g~~~~kT~vvk~t~nP~WnE~f~f~i~~--~-~~~l~~~V~D~d~~ 73 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTL----GNQKVKTRVIKKNLNPVWNEELTLSVPN--P-MAPLKLEVFDKDTF 73 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEE----CCEEEEeeeEcCCCCCeecccEEEEecC--C-CCEEEEEEEECCCC
Confidence 679999999999998876 78999999998 5688999999999999999999999853 2 56899999999999
Q ss_pred CCCceeEEEEEecCCCC-CccchhhhhhcCCCceeEeeeecC
Q psy12137 178 KSNDYLGCLELCCNSKG-DRLRHWVDMMKYPDHKHEGIHNLS 218 (224)
Q Consensus 178 ~~~~~lG~~~l~l~~~~-~~~~~w~~l~~~~~~~~~~wh~l~ 218 (224)
+++++||++.+++...- ....+|..-. ..+..+.+|.+-.
T Consensus 74 ~~dd~iG~a~i~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~ 114 (145)
T cd04038 74 SKDDSMGEAEIDLEPLVEAAKLDHLRDT-PGGTQIKKVLPSV 114 (145)
T ss_pred CCCCEEEEEEEEHHHhhhhhhhhccccC-CCCEEEEEEecCC
Confidence 99999999999998632 2222222222 3355788887743
No 68
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.76 E-value=1.5e-17 Score=118.08 Aligned_cols=86 Identities=26% Similarity=0.446 Sum_probs=74.7
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCC
Q psy12137 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 179 (224)
Q Consensus 100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~ 179 (224)
|.|+|++|+||+. ..|.+||||++++.. ...+++|++++++.||.|||.|.|.+... ...|.|+|||++..++
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~--~~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~~~~ 73 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE--PPQKYQSSTQKNTSNPFWDEHFLFELSPN---SKELLFEVYDNGKKSD 73 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECC--CCcEEEeEEEecCCCCccCceEEEEeCCC---CCEEEEEEEECCCCCC
Confidence 5799999999987 668999999999831 13678999999999999999999998532 4689999999999888
Q ss_pred CceeEEEEEecCC
Q psy12137 180 NDYLGCLELCCNS 192 (224)
Q Consensus 180 ~~~lG~~~l~l~~ 192 (224)
+++||++.++++.
T Consensus 74 ~~~lG~~~i~l~~ 86 (126)
T cd08678 74 SKFLGLAIVPFDE 86 (126)
T ss_pred CceEEEEEEeHHH
Confidence 9999999999986
No 69
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.76 E-value=1.1e-17 Score=117.86 Aligned_cols=84 Identities=31% Similarity=0.444 Sum_probs=73.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCC
Q psy12137 99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 178 (224)
Q Consensus 99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~ 178 (224)
.|.|+|++|+||+.. .+||||++++ +....+|++++++.||.|||+|.|.+. .+....|.|+|||++..
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l----~~~~~kT~v~~~t~nP~Wne~F~f~~~--~~~~~~L~~~v~d~d~~- 69 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKL----GNYKGSTKAIERTSNPEWNQVFAFSKD--RLQGSTLEVSVWDKDKA- 69 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEE----CCccccccccCCCCCCccceEEEEEcC--CCcCCEEEEEEEeCCCC-
Confidence 378999999999876 6899999998 457889999999999999999999973 44567899999999977
Q ss_pred CCceeEEEEEecCCC
Q psy12137 179 SNDYLGCLELCCNSK 193 (224)
Q Consensus 179 ~~~~lG~~~l~l~~~ 193 (224)
++++||++.++++..
T Consensus 70 ~~~~lG~~~i~l~~l 84 (121)
T cd08378 70 KDDFLGGVCFDLSEV 84 (121)
T ss_pred cCceeeeEEEEhHhC
Confidence 788999999999864
No 70
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.75 E-value=7.5e-18 Score=122.60 Aligned_cols=95 Identities=35% Similarity=0.616 Sum_probs=80.0
Q ss_pred EeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-------------------------CeEeeeeeeCCCCC
Q psy12137 93 FSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-------------------------RKYKTGVKWKTLNP 147 (224)
Q Consensus 93 ~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-------------------------~~~~T~~~~~~~~p 147 (224)
..+..+.|.|.|++|++|+..+..|.+||||++++.+...+ ..++|++++++.+|
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 102 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP 102 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence 45667889999999999999998999999999998543211 24789999999999
Q ss_pred eeceEEEEEeecCcccccEEEEEEEECCCCCCCceeEEEEEecCCC
Q psy12137 148 IFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK 193 (224)
Q Consensus 148 ~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~ 193 (224)
.|||+|.|.+. .+....|.|+|||++ +++||++.++++..
T Consensus 103 ~WnE~F~f~v~--~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l 142 (153)
T cd08676 103 VWNETFRFEVE--DVSNDQLHLDIWDHD----DDFLGCVNIPLKDL 142 (153)
T ss_pred ccccEEEEEec--cCCCCEEEEEEEecC----CCeEEEEEEEHHHh
Confidence 99999999984 444578999999987 78999999998763
No 71
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.75 E-value=1.5e-17 Score=117.28 Aligned_cols=88 Identities=30% Similarity=0.520 Sum_probs=76.5
Q ss_pred CEEEEEEEEeecCCCCCC------CCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEE
Q psy12137 98 RALIVNLIKCTNLIPMDS------NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITV 171 (224)
Q Consensus 98 ~~l~v~i~~a~~L~~~~~------~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v 171 (224)
|.|.|.|++|++|+..+. .|.+||||++++ ++..++|++++++.+|.|||.|.|.+. ......|.|+|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~----~~~~~kT~~~~~t~~P~W~e~f~~~v~--~~~~~~l~i~v 74 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRV----GAQTFKSKVIKENLNPKWNEVYEAVVD--EVPGQELEIEL 74 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEE----CCEeEEccccCCCCCCcccceEEEEeC--CCCCCEEEEEE
Confidence 568999999999998764 368999999998 457899999999999999999999984 33457899999
Q ss_pred EECCCCCCCceeEEEEEecCC
Q psy12137 172 WDKDYGKSNDYLGCLELCCNS 192 (224)
Q Consensus 172 ~~~~~~~~~~~lG~~~l~l~~ 192 (224)
||++.. ++++||++.+++..
T Consensus 75 ~d~~~~-~~~~iG~~~i~l~~ 94 (121)
T cd08391 75 FDEDPD-KDDFLGRLSIDLGS 94 (121)
T ss_pred EecCCC-CCCcEEEEEEEHHH
Confidence 999987 88999999999876
No 72
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.75 E-value=3.2e-17 Score=117.53 Aligned_cols=91 Identities=31% Similarity=0.423 Sum_probs=78.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEecCC-CC--CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL-HK--RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 176 (224)
Q Consensus 100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~-~~--~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~ 176 (224)
|.|.|++|++|+..+..|.+||||++++.+.. +. ...+|++++++.+|.|||+|.|.+... ...|.|+|||++.
T Consensus 2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~ 78 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR---EHRLLFEVFDENR 78 (133)
T ss_pred EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC---CCEEEEEEEECCC
Confidence 78999999999998888899999999986431 11 367999999999999999999998543 3579999999999
Q ss_pred CCCCceeEEEEEecCCC
Q psy12137 177 GKSNDYLGCLELCCNSK 193 (224)
Q Consensus 177 ~~~~~~lG~~~l~l~~~ 193 (224)
++++++||++.+++.+.
T Consensus 79 ~~~~~~iG~~~i~l~~l 95 (133)
T cd04033 79 LTRDDFLGQVEVPLNNL 95 (133)
T ss_pred CCCCCeeEEEEEEHHHC
Confidence 98899999999998863
No 73
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.75 E-value=3e-17 Score=116.70 Aligned_cols=100 Identities=27% Similarity=0.536 Sum_probs=82.4
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCC-
Q psy12137 99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG- 177 (224)
Q Consensus 99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~- 177 (224)
.|.|.|++|++|+..+..|.+||||++++ +....+|++++++.+|.|||.|.|.+... ...|.|+|||++..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~----~~~~~kT~~v~~t~~P~Wne~f~f~~~~~---~~~l~i~v~d~d~~~ 74 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQV----GKTKKRTKTIPQNLNPVWNEKFHFECHNS---SDRIKVRVWDEDDDI 74 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEE----CCEeeecceecCCCCCccceEEEEEecCC---CCEEEEEEEECCCCc
Confidence 68999999999999888889999999998 45678999999999999999999987422 35899999998852
Q ss_pred ----------CCCceeEEEEEecCCCCCccchhhhhhc
Q psy12137 178 ----------KSNDYLGCLELCCNSKGDRLRHWVDMMK 205 (224)
Q Consensus 178 ----------~~~~~lG~~~l~l~~~~~~~~~w~~l~~ 205 (224)
+.+++||++.+++........+|+.|..
T Consensus 75 ~~~~~~~~~~~~~~~iG~~~i~l~~~~~~~~~w~~L~~ 112 (127)
T cd04027 75 KSRLKQKFTRESDDFLGQTIIEVRTLSGEMDVWYNLEK 112 (127)
T ss_pred ccccceeccccCCCcceEEEEEhHHccCCCCeEEECcc
Confidence 4688999999998875554555655553
No 74
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.75 E-value=6.4e-17 Score=114.89 Aligned_cols=91 Identities=30% Similarity=0.500 Sum_probs=78.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCC
Q psy12137 99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 178 (224)
Q Consensus 99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~ 178 (224)
.+.|.|++|++|+..+..+.+||||++.+.+. +....+|++++++.+|.|||+|.|.+... ....|.|+||+++..+
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~-~~~~~kT~~~~~t~~P~Wne~f~f~i~~~--~~~~L~i~v~d~d~~~ 78 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNG-KRRIAKTRTIYDTLNPRWDEEFELEVPAG--EPLWISATVWDRSFVG 78 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCC-CeeeecccEecCCCCCcccceEEEEcCCC--CCCEEEEEEEECCCCC
Confidence 57899999999999888889999999986321 13568999999999999999999998543 3468999999999888
Q ss_pred CCceeEEEEEecCC
Q psy12137 179 SNDYLGCLELCCNS 192 (224)
Q Consensus 179 ~~~~lG~~~l~l~~ 192 (224)
++++||++.+++..
T Consensus 79 ~~~~iG~~~i~l~~ 92 (126)
T cd04043 79 KHDLCGRASLKLDP 92 (126)
T ss_pred CCceEEEEEEecCH
Confidence 89999999999874
No 75
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.75 E-value=2.5e-17 Score=119.69 Aligned_cols=106 Identities=20% Similarity=0.290 Sum_probs=84.8
Q ss_pred EEEEEEEeec--CCCCCCCCCCCcEEEEEEe-cCCCCCeEeeeeeeCCCCCeeceEEEEEeecC------cccccEEEEE
Q psy12137 100 LIVNLIKCTN--LIPMDSNGFSDPFIKLYLK-PDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT------ELSKQTLVIT 170 (224)
Q Consensus 100 l~v~i~~a~~--L~~~~~~g~~dpyv~~~~~-~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~------~~~~~~l~i~ 170 (224)
..+.|..|++ ++..+.++.+||||++++. +..+.++.+|++++++.||+|||+|.|.+... .+....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 4556666666 6777777889999999974 43334899999999999999999999999654 2446789999
Q ss_pred EEECCCC-CCCceeEEEEEecCCC--CCccchhhhhhc
Q psy12137 171 VWDKDYG-KSNDYLGCLELCCNSK--GDRLRHWVDMMK 205 (224)
Q Consensus 171 v~~~~~~-~~~~~lG~~~l~l~~~--~~~~~~w~~l~~ 205 (224)
|||++.+ ++|++||++.++|... .....+|.+|+.
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~ 121 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD 121 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh
Confidence 9999875 5799999999999975 445667888764
No 76
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.74 E-value=4.7e-17 Score=115.28 Aligned_cols=108 Identities=22% Similarity=0.313 Sum_probs=86.2
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeC-CCCCeeceEEEEEeecCcc-cccEEEEEEEECC
Q psy12137 98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWK-TLNPIFNEEFAIETKITEL-SKQTLVITVWDKD 175 (224)
Q Consensus 98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~-~~~p~~~e~f~f~~~~~~~-~~~~l~i~v~~~~ 175 (224)
|.|.|.|++|++|+..+..+.+||||++++ +...++|++.++ +.+|.|||.|.|.+..... ....|.|+|||++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~----~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~ 76 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQC----RTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKD 76 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEE----CCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECc
Confidence 578999999999998887889999999998 456678888764 8999999999999864321 2468999999999
Q ss_pred CCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCC
Q psy12137 176 YGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP 221 (224)
Q Consensus 176 ~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~ 221 (224)
.++++++||++.+++.+. +. +.....|+.|.|.+
T Consensus 77 ~~~~d~~iG~~~i~l~~l----------~~--~~~~~~~~~l~p~~ 110 (124)
T cd04049 77 NFSDDDFIGEATIHLKGL----------FE--EGVEPGTAELVPAK 110 (124)
T ss_pred cCCCCCeEEEEEEEhHHh----------hh--CCCCcCceEeeccc
Confidence 988899999999998762 21 22456777777654
No 77
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.74 E-value=6.8e-17 Score=114.65 Aligned_cols=86 Identities=17% Similarity=0.343 Sum_probs=71.3
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137 98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 176 (224)
Q Consensus 98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~ 176 (224)
..|.|.|++|+||+.. +.+||||++++ ++ +..+|++. ++.||.|||.|.|.+....+ ..+.|.|||++.
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l----~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~--~~l~v~v~d~~~ 73 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISL----NEVKVARTKVR-EGPNPVWSEEFVFDDLPPDV--NSFTISLSNKAK 73 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEE----CCEeEEEeecC-CCCCCccCCEEEEecCCCCc--CEEEEEEEECCC
Confidence 4689999999999864 47899999999 34 55788875 57999999999998643322 478899999999
Q ss_pred CCCCceeEEEEEecCCC
Q psy12137 177 GKSNDYLGCLELCCNSK 193 (224)
Q Consensus 177 ~~~~~~lG~~~l~l~~~ 193 (224)
++++++||++.+++...
T Consensus 74 ~~~d~~iG~v~i~l~~l 90 (126)
T cd08400 74 RSKDSEIAEVTVQLSKL 90 (126)
T ss_pred CCCCCeEEEEEEEHhHc
Confidence 99999999999998863
No 78
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.74 E-value=3.5e-17 Score=115.60 Aligned_cols=91 Identities=25% Similarity=0.437 Sum_probs=77.8
Q ss_pred CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECC
Q psy12137 96 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 175 (224)
Q Consensus 96 ~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~ 175 (224)
..+.|.|.|++|++|+. +..+.+||||++++ ++++++|++++++.+|+|||+|.|..... .....|.|+|||++
T Consensus 26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~----~~~~~kT~vi~~t~nPvWNE~F~f~~~~~-~~~~~L~v~V~D~d 99 (127)
T cd04032 26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFF----GGQEKRTEVIWNNNNPRWNATFDFGSVEL-SPGGKLRFEVWDRD 99 (127)
T ss_pred CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEE----CCccccCceecCCCCCcCCCEEEEecccC-CCCCEEEEEEEeCC
Confidence 36788999999999984 56678999999998 45688999999999999999999974211 23468999999999
Q ss_pred CCCCCceeEEEEEecCC
Q psy12137 176 YGKSNDYLGCLELCCNS 192 (224)
Q Consensus 176 ~~~~~~~lG~~~l~l~~ 192 (224)
.++++++||++.+++..
T Consensus 100 ~~s~dd~IG~~~i~l~~ 116 (127)
T cd04032 100 NGWDDDLLGTCSVVPEA 116 (127)
T ss_pred CCCCCCeeEEEEEEecC
Confidence 99999999999999985
No 79
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.74 E-value=6.4e-17 Score=113.73 Aligned_cols=110 Identities=17% Similarity=0.239 Sum_probs=88.0
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCC
Q psy12137 98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 177 (224)
Q Consensus 98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~ 177 (224)
|.|.|.|++|++|+..+..+.+||||++++. +....+|++++++.+|.|||.|.|.+... ...|.|+||+++..
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~---~~~~~kT~~~~~t~~P~Wne~f~~~v~~~---~~~L~v~v~d~~~~ 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN---GIVKGRTVTISNTLNPVWDEVLYVPVTSP---NQKITLEVMDYEKV 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEEC---CEEeeceeEECCCcCCccCceEEEEecCC---CCEEEEEEEECCCC
Confidence 5789999999999998888999999999982 22678999999999999999999987432 36899999999999
Q ss_pred CCCceeEEEEEecCCC-CCccchhhhhhcCCCceeEe
Q psy12137 178 KSNDYLGCLELCCNSK-GDRLRHWVDMMKYPDHKHEG 213 (224)
Q Consensus 178 ~~~~~lG~~~l~l~~~-~~~~~~w~~l~~~~~~~~~~ 213 (224)
+++++||++.+++... ......||.+++.......+
T Consensus 75 ~~d~~IG~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 111 (120)
T cd04045 75 GKDRSLGSVEINVSDLIKKNEDGKYVEYDDEEERLKR 111 (120)
T ss_pred CCCCeeeEEEEeHHHhhCCCCCceEEecCCCcceeeE
Confidence 8999999999998753 23445566666555444333
No 80
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.74 E-value=3.4e-17 Score=120.44 Aligned_cols=102 Identities=25% Similarity=0.349 Sum_probs=82.0
Q ss_pred CCEEEEEEEEeecCCCCC------------------------------CCCCCCcEEEEEEecCCCC-CeEeeeeeeCCC
Q psy12137 97 KRALIVNLIKCTNLIPMD------------------------------SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTL 145 (224)
Q Consensus 97 ~~~l~v~i~~a~~L~~~~------------------------------~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~ 145 (224)
.|.|.|+|++|++|+.++ ..|.+||||++++ ++ +..+|++++++.
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l----~~~~~~rT~v~~~~~ 81 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDL----AGARVARTRVIENSE 81 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEE----CCeEeeEEEEeCCCC
Confidence 578999999999999876 3467899999998 44 457999999999
Q ss_pred CCeeceEEEEEeecCcccccEEEEEEEECCCCCCCceeEEEEEecCCC--CCccchhhhhhcC
Q psy12137 146 NPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVDMMKY 206 (224)
Q Consensus 146 ~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~--~~~~~~w~~l~~~ 206 (224)
||.|||+|.|.+.. . ...|.|.|||++.++ +++||++.++++.. +...++|++|...
T Consensus 82 nP~WnE~F~~~~~~--~-~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~ 140 (158)
T cd04015 82 NPVWNESFHIYCAH--Y-ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDS 140 (158)
T ss_pred CCccceEEEEEccC--C-CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCC
Confidence 99999999998742 2 357999999999875 57999999998863 3444556666543
No 81
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.74 E-value=7.2e-17 Score=115.55 Aligned_cols=89 Identities=24% Similarity=0.403 Sum_probs=75.8
Q ss_pred CCEEEEEEEEeecCCCCCC----------CCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccE
Q psy12137 97 KRALIVNLIKCTNLIPMDS----------NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQT 166 (224)
Q Consensus 97 ~~~l~v~i~~a~~L~~~~~----------~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~ 166 (224)
.+.|.|+|++|++|+..+. .+.+||||++++. +.+..+|++++++.+|.|||+|.|.+. ....
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~---~~~~~kT~~~~~t~~P~Wne~f~~~v~----~~~~ 75 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD---DTHIGKTSTKPKTNSPVWNEEFTTEVH----NGRN 75 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC---CEEEeEEeEcCCCCCCCcceeEEEEcC----CCCE
Confidence 3678999999999988765 2578999999983 224578999999999999999999985 2468
Q ss_pred EEEEEEECCCCCCCceeEEEEEecCC
Q psy12137 167 LVITVWDKDYGKSNDYLGCLELCCNS 192 (224)
Q Consensus 167 l~i~v~~~~~~~~~~~lG~~~l~l~~ 192 (224)
|.|.||+++.++++++||++.+++++
T Consensus 76 l~~~v~d~~~~~~~~~iG~~~i~l~~ 101 (132)
T cd04014 76 LELTVFHDAAIGPDDFVANCTISFED 101 (132)
T ss_pred EEEEEEeCCCCCCCceEEEEEEEhHH
Confidence 99999999988889999999999875
No 82
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.72 E-value=6.6e-17 Score=114.77 Aligned_cols=98 Identities=19% Similarity=0.327 Sum_probs=82.3
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCC
Q psy12137 98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 177 (224)
Q Consensus 98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~ 177 (224)
..|+|.|++|++|+..+..|.+||||++.+ +.+..+|++++++.+|.|||.|.|.+.. . ...|.|+|||++..
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~----~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~-~~~l~i~V~d~~~~ 75 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKC----EGESVRSPVQKDTLSPEFDTQAIFYRKK--P-RSPIKIQVWNSNLL 75 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEE----CCEEEEeCccCCCCCCcccceEEEEecC--C-CCEEEEEEEECCCC
Confidence 578999999999999888899999999987 4578899999999999999999998742 2 46899999999887
Q ss_pred CCCceeEEEEEecCCCCCccchhhhh
Q psy12137 178 KSNDYLGCLELCCNSKGDRLRHWVDM 203 (224)
Q Consensus 178 ~~~~~lG~~~l~l~~~~~~~~~w~~l 203 (224)
+ +++||.+.++++.......+|+.|
T Consensus 76 ~-d~~lG~~~~~l~~~~~~~~~~~~l 100 (126)
T cd04046 76 C-DEFLGQATLSADPNDSQTLRTLPL 100 (126)
T ss_pred C-CCceEEEEEecccCCCcCceEEEc
Confidence 4 789999999998654444444444
No 83
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.71 E-value=1.9e-16 Score=111.89 Aligned_cols=86 Identities=26% Similarity=0.436 Sum_probs=76.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCC
Q psy12137 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 179 (224)
Q Consensus 100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~ 179 (224)
|.|.|++|++|+..+..+.+||||++++. +.+.++|++++++.||.|||.|.|.+.. ...|.|+|||++.+++
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~~kT~v~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~~~~ 74 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVD---GGQTHSTDVAKKTLDPKWNEHFDLTVGP----SSIITIQVFDQKKFKK 74 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEEC---CccceEccEEcCCCCCcccceEEEEeCC----CCEEEEEEEECCCCCC
Confidence 78999999999998888999999999983 2578899999999999999999999853 4699999999998765
Q ss_pred --CceeEEEEEecCC
Q psy12137 180 --NDYLGCLELCCNS 192 (224)
Q Consensus 180 --~~~lG~~~l~l~~ 192 (224)
+++||++.+++..
T Consensus 75 ~~d~~lG~~~i~l~~ 89 (123)
T cd08382 75 KDQGFLGCVRIRANA 89 (123)
T ss_pred CCCceEeEEEEEHHH
Confidence 4799999999886
No 84
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.71 E-value=3.6e-16 Score=111.21 Aligned_cols=95 Identities=23% Similarity=0.216 Sum_probs=77.6
Q ss_pred EEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCCCcee
Q psy12137 104 LIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYL 183 (224)
Q Consensus 104 i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~~~~l 183 (224)
|++|++|+. ..|.+||||++++ ++.+++|++++++.+|.|||+|.|.+.........|.|+||+++..+++++|
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~----~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~i 75 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTF----RGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLI 75 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEE----CCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceE
Confidence 689999988 5678999999998 4567899999999999999999999853323457899999999998889999
Q ss_pred EEEEEecCCCC--Cccchhhhhh
Q psy12137 184 GCLELCCNSKG--DRLRHWVDMM 204 (224)
Q Consensus 184 G~~~l~l~~~~--~~~~~w~~l~ 204 (224)
|++.++++... .....|+.|.
T Consensus 76 G~~~~~l~~l~~~~~~~~~~~L~ 98 (127)
T cd08373 76 GSATVSLQDLVSEGLLEVTEPLL 98 (127)
T ss_pred EEEEEEhhHcccCCceEEEEeCc
Confidence 99999998633 2334455554
No 85
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.70 E-value=1e-15 Score=109.64 Aligned_cols=108 Identities=20% Similarity=0.266 Sum_probs=82.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCC---------CCeEeeeeeeCCCCCee-ceEEEEEeecCcccccEEE
Q psy12137 99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH---------KRKYKTGVKWKTLNPIF-NEEFAIETKITELSKQTLV 168 (224)
Q Consensus 99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~---------~~~~~T~~~~~~~~p~~-~e~f~f~~~~~~~~~~~l~ 168 (224)
.+.|.+++|++|+ .+..|.+||||++++.+... .+.++|++++++.||.| ||.|.|.+.. +..|.
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~----~~~L~ 76 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP----TDVLE 76 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC----CCEEE
Confidence 3678999999998 66678999999999975432 24789999999999999 9999999843 35899
Q ss_pred EEEEECCCCCC---CceeEEEEEecCCCCCccchhhhhhcCC-CceeEeeeecCCCC
Q psy12137 169 ITVWDKDYGKS---NDYLGCLELCCNSKGDRLRHWVDMMKYP-DHKHEGIHNLSIKP 221 (224)
Q Consensus 169 i~v~~~~~~~~---~~~lG~~~l~l~~~~~~~~~w~~l~~~~-~~~~~~wh~l~~~~ 221 (224)
|+|||++..++ +++||++.+++.+. ++.+ ......|++|....
T Consensus 77 v~V~D~~~~~~~~~~d~lG~~~i~l~~l----------~~~~~~~~~~~~~~l~k~~ 123 (137)
T cd08691 77 IEVKDKFAKSRPIIRRFLGKLSIPVQRL----------LERHAIGDQELSYTLGRRT 123 (137)
T ss_pred EEEEecCCCCCccCCceEEEEEEEHHHh----------cccccCCceEEEEECCcCC
Confidence 99999765433 68999999998863 1111 22366677776443
No 86
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.70 E-value=5.4e-16 Score=108.33 Aligned_cols=105 Identities=34% Similarity=0.515 Sum_probs=85.8
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCC
Q psy12137 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 179 (224)
Q Consensus 100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~ 179 (224)
|.|.|++|++|+..+..+.+||||++.+. +...++|+++.++.+|.|||+|.|.+... ....|.|+||+++..++
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~---~~~~~~T~v~~~~~~P~Wne~f~~~~~~~--~~~~l~~~v~d~~~~~~ 75 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLN---GEKVFKTKTIKKTLNPVWNESFEVPVPSR--VRAVLKVEVYDWDRGGK 75 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEEC---CCcceeeceecCCCCCcccccEEEEeccC--CCCEEEEEEEeCCCCCC
Confidence 57899999999998878889999999983 23668999999999999999999998532 45689999999998888
Q ss_pred CceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCC
Q psy12137 180 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP 221 (224)
Q Consensus 180 ~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~ 221 (224)
+++||++.+++.... .+.....|.+|.+..
T Consensus 76 ~~~iG~~~~~l~~l~------------~~~~~~~~~~L~~~g 105 (115)
T cd04040 76 DDLLGSAYIDLSDLE------------PEETTELTLPLDGQG 105 (115)
T ss_pred CCceEEEEEEHHHcC------------CCCcEEEEEECcCCC
Confidence 999999999987632 133467777776554
No 87
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.68 E-value=5.2e-16 Score=108.74 Aligned_cols=98 Identities=23% Similarity=0.340 Sum_probs=77.3
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCC
Q psy12137 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 179 (224)
Q Consensus 100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~ 179 (224)
|.|.|++|++|+.. |.+||||.+++. +...++|+++++ .+|.|||+|.|.+...++....|.|.+|+.+...+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~---~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~ 74 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLD---QVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDR 74 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEEC---CEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCC
Confidence 68999999999875 789999999983 225679999988 99999999999997655555688899999887766
Q ss_pred CceeEEEEEecCCCCCccchhhhhh
Q psy12137 180 NDYLGCLELCCNSKGDRLRHWVDMM 204 (224)
Q Consensus 180 ~~~lG~~~l~l~~~~~~~~~w~~l~ 204 (224)
+..+|.+.|.....+...++|+.|.
T Consensus 75 ~~~~g~v~l~~~~~~~~~~~w~~L~ 99 (117)
T cd08383 75 DIVIGKVALSKLDLGQGKDEWFPLT 99 (117)
T ss_pred eeEEEEEEecCcCCCCcceeEEECc
Confidence 7788888877655554455555554
No 88
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.68 E-value=6.5e-16 Score=106.49 Aligned_cols=84 Identities=26% Similarity=0.259 Sum_probs=71.4
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCC-CCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEEC----
Q psy12137 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDK---- 174 (224)
Q Consensus 100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~-~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~---- 174 (224)
|.|.|.+|+||+ +.+||||++.+.+.+. ....+|++++++.||.|||+|.|.+. . ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~--s~~L~~~v~d~~~~~ 71 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE--G--SQTLRILCYEKCYSK 71 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC--C--CCEEEEEEEEccccc
Confidence 579999999995 4589999999876543 36899999999999999999999984 2 46999999998
Q ss_pred ---CCCCCCceeEEEEEecCC
Q psy12137 175 ---DYGKSNDYLGCLELCCNS 192 (224)
Q Consensus 175 ---~~~~~~~~lG~~~l~l~~ 192 (224)
+..++|+++|++.+.|+.
T Consensus 72 ~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 72 VKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccccCcccEEEEEEEEECH
Confidence 466789999999999874
No 89
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.67 E-value=7.2e-16 Score=109.34 Aligned_cols=91 Identities=19% Similarity=0.288 Sum_probs=76.9
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeee-CCCCCeeceEEEEEeecCcc--cccEEEEEEEECC
Q psy12137 99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKW-KTLNPIFNEEFAIETKITEL--SKQTLVITVWDKD 175 (224)
Q Consensus 99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~-~~~~p~~~e~f~f~~~~~~~--~~~~l~i~v~~~~ 175 (224)
.|.|.|++|++|+..+..+.+||||++++.+ ..+++|++.. ++.+|.|||.|.|.+....+ ....|.|+|||++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~---~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~ 77 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP---SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER 77 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC---CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC
Confidence 3789999999999988888999999999831 2678888875 57999999999999854421 2468999999999
Q ss_pred CCCCCceeEEEEEecCC
Q psy12137 176 YGKSNDYLGCLELCCNS 192 (224)
Q Consensus 176 ~~~~~~~lG~~~l~l~~ 192 (224)
.++++++||++.+++.+
T Consensus 78 ~~~~~~~lG~~~i~l~~ 94 (125)
T cd04051 78 PSLGDKLIGEVRVPLKD 94 (125)
T ss_pred CCCCCCcEEEEEEEHHH
Confidence 88889999999999886
No 90
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.67 E-value=6e-16 Score=107.25 Aligned_cols=91 Identities=26% Similarity=0.357 Sum_probs=74.5
Q ss_pred EEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC--CeEeeeeeeCCCCCeeceEEEEEeecCccc----ccEEEEEEEEC
Q psy12137 101 IVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS----KQTLVITVWDK 174 (224)
Q Consensus 101 ~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~--~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~----~~~l~i~v~~~ 174 (224)
.+..++|++|+..+..|.+||||++++.+..+. ..++|++++++.+|.|| .|.|.+ ..+. ...|.|+|||+
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~--~~l~~~~~~~~l~~~V~d~ 79 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPL--QKLCNGDYDRPIKIEVYDY 79 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEH--HHhcCCCcCCEEEEEEEEe
Confidence 455679999999998899999999998654312 56899999999999999 577664 2332 46899999999
Q ss_pred CCCCCCceeEEEEEecCCCC
Q psy12137 175 DYGKSNDYLGCLELCCNSKG 194 (224)
Q Consensus 175 ~~~~~~~~lG~~~l~l~~~~ 194 (224)
+..+++++||++.++++..-
T Consensus 80 d~~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 80 DSSGKHDLIGEFETTLDELL 99 (110)
T ss_pred CCCCCCcEEEEEEEEHHHHh
Confidence 99999999999999998754
No 91
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.66 E-value=3e-15 Score=105.39 Aligned_cols=88 Identities=32% Similarity=0.407 Sum_probs=74.1
Q ss_pred EEEEeecCCCCCCCCCCCcEEEEEEecCC--CC-CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC---
Q psy12137 103 NLIKCTNLIPMDSNGFSDPFIKLYLKPDL--HK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY--- 176 (224)
Q Consensus 103 ~i~~a~~L~~~~~~g~~dpyv~~~~~~~~--~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~--- 176 (224)
..++|++|+..+..|.+||||++++.+.. .. ..++|++++++.+|.|||+|.|.+.... ...|.|+|||++.
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~--~~~l~~~V~d~d~~~~ 82 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE--VQKLRFEVYDVDSKSK 82 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEe--eeEEEEEEEEecCCcC
Confidence 45789999998888999999999987543 11 4689999999999999999999864332 3579999999997
Q ss_pred -CCCCceeEEEEEecCC
Q psy12137 177 -GKSNDYLGCLELCCNS 192 (224)
Q Consensus 177 -~~~~~~lG~~~l~l~~ 192 (224)
.+++++||++.++++.
T Consensus 83 ~~~~~d~iG~~~i~l~~ 99 (120)
T cd04048 83 DLSDHDFLGEAECTLGE 99 (120)
T ss_pred CCCCCcEEEEEEEEHHH
Confidence 7889999999999886
No 92
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.64 E-value=5.9e-15 Score=104.40 Aligned_cols=91 Identities=25% Similarity=0.337 Sum_probs=77.6
Q ss_pred CEEEEEEEEeecCCCCC-CCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137 98 RALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 176 (224)
Q Consensus 98 ~~l~v~i~~a~~L~~~~-~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~ 176 (224)
|.|.|.|++|++|+..+ ..+.+||||++++... ....+|++++++.+|.|||.|.|.+. .....|.|+|||++.
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~--~~~~kT~~~~~~~~P~Wne~~~~~v~---~~~~~l~~~v~d~~~ 76 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR--RELARTKVKKDTSNPVWNETKYILVN---SLTEPLNLTVYDFND 76 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC--CcceEeeeecCCCCCcceEEEEEEeC---CCCCEEEEEEEecCC
Confidence 67899999999998654 3467899999998421 37789999999999999999999985 235789999999998
Q ss_pred CCCCceeEEEEEecCCC
Q psy12137 177 GKSNDYLGCLELCCNSK 193 (224)
Q Consensus 177 ~~~~~~lG~~~l~l~~~ 193 (224)
.+++++||.+.+++...
T Consensus 77 ~~~d~~iG~~~~~l~~l 93 (124)
T cd04044 77 KRKDKLIGTAEFDLSSL 93 (124)
T ss_pred CCCCceeEEEEEEHHHh
Confidence 88899999999998863
No 93
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.63 E-value=5.8e-15 Score=105.04 Aligned_cols=104 Identities=25% Similarity=0.399 Sum_probs=83.5
Q ss_pred CEEEEEEEEeecCCCCC--CCCCCCcEEEEEEecCCC--CCeEeeeeeeCCC-CCeeceEEEEEeecCcccccEEEEEEE
Q psy12137 98 RALIVNLIKCTNLIPMD--SNGFSDPFIKLYLKPDLH--KRKYKTGVKWKTL-NPIFNEEFAIETKITELSKQTLVITVW 172 (224)
Q Consensus 98 ~~l~v~i~~a~~L~~~~--~~g~~dpyv~~~~~~~~~--~~~~~T~~~~~~~-~p~~~e~f~f~~~~~~~~~~~l~i~v~ 172 (224)
..|+|.|++|++|+..+ ..+..||||++++.+... ..+.+|+++.++. +|.|||+|.|.+...+ ...|.|+||
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~--~~~l~~~V~ 79 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE--LAFLRFVVY 79 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC--eEEEEEEEE
Confidence 36899999999999887 467899999999976543 3788999987776 9999999999986332 357999999
Q ss_pred ECCCCCCCceeEEEEEecCCCCCccchhhhhhc
Q psy12137 173 DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMK 205 (224)
Q Consensus 173 ~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~ 205 (224)
+++.. ++++||++.++++....+. +|..|.+
T Consensus 80 d~~~~-~~~~iG~~~~~l~~l~~g~-~~~~l~~ 110 (128)
T cd00275 80 DEDSG-DDDFLGQACLPLDSLRQGY-RHVPLLD 110 (128)
T ss_pred eCCCC-CCcEeEEEEEEhHHhcCce-EEEEecC
Confidence 99988 8899999999998764433 3455554
No 94
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.62 E-value=7.5e-15 Score=105.73 Aligned_cols=101 Identities=17% Similarity=0.216 Sum_probs=77.1
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECC
Q psy12137 97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 175 (224)
Q Consensus 97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~ 175 (224)
...|.|.|++|++|+.++ ++||.+.+ ++ ...+|+++.++.+|.|+|.|.|...+. -..|.|.||+.+
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~L----d~~~vaRT~v~~~~~nP~W~E~F~f~~~~~---~~~l~v~v~k~~ 77 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-----RYYCELCL----DKTLYARTTSKLKTDTLFWGEHFEFSNLPP---VSVITVNLYRES 77 (146)
T ss_pred EEEEEEEEEEccCCCCcC-----CceEEEEE----CCEEEEEEEEEcCCCCCcceeeEEecCCCc---ccEEEEEEEEcc
Confidence 346789999999998754 79999999 55 557999999999999999999986432 257999998654
Q ss_pred C-CC---CCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCC
Q psy12137 176 Y-GK---SNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP 221 (224)
Q Consensus 176 ~-~~---~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~ 221 (224)
. .+ ++.+||.+.|++.... .+..+++|++|.+..
T Consensus 78 ~~~~~~~~~~~IG~V~Ip~~~l~------------~~~~ve~Wfpl~~~~ 115 (146)
T cd04013 78 DKKKKKDKSQLIGTVNIPVTDVS------------SRQFVEKWYPVSTPK 115 (146)
T ss_pred CccccccCCcEEEEEEEEHHHhc------------CCCcccEEEEeecCC
Confidence 2 22 5689999999987532 245566777766443
No 95
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.62 E-value=7.7e-15 Score=103.83 Aligned_cols=94 Identities=29% Similarity=0.396 Sum_probs=79.8
Q ss_pred EEEEEEEeecCCCCC--CCC--CCCcEEEEEEecCCCCCeEeeeeeeCCCC--CeeceEEEEEeec--------------
Q psy12137 100 LIVNLIKCTNLIPMD--SNG--FSDPFIKLYLKPDLHKRKYKTGVKWKTLN--PIFNEEFAIETKI-------------- 159 (224)
Q Consensus 100 l~v~i~~a~~L~~~~--~~g--~~dpyv~~~~~~~~~~~~~~T~~~~~~~~--p~~~e~f~f~~~~-------------- 159 (224)
|+|.|.+|++++..+ ..| .+||||++.+.+. ...+++|.+++++.+ |.||+.|.|++..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~-~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGL-EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccC-cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 789999999966433 355 4999999998764 248899999999999 9999999999766
Q ss_pred -------CcccccEEEEEEEECCCCCCCceeEEEEEecCCCC
Q psy12137 160 -------TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG 194 (224)
Q Consensus 160 -------~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~ 194 (224)
+.+....|.|+|||.|.++++++||.+.++++...
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~ 122 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILP 122 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcc
Confidence 45566889999999999999999999999998644
No 96
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.61 E-value=2.1e-14 Score=101.69 Aligned_cols=86 Identities=26% Similarity=0.325 Sum_probs=73.5
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137 98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 176 (224)
Q Consensus 98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~ 176 (224)
..|.|.|.+|+ |...+..+.+||||++++ +. ...+|++++++.+|.|||.|.|.+.. ...|.|+|||++.
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~----~~~~~~kT~v~~~t~~P~Wne~f~~~~~~----~~~l~~~V~d~~~ 72 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTV----DGQPPKKTEVSKKTSNPKWNEHFTVLVTP----QSTLEFKVWSHHT 72 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEE----CCcccEEeeeeCCCCCCccccEEEEEeCC----CCEEEEEEEeCCC
Confidence 46899999998 544455778999999998 33 47899999999999999999999842 3689999999999
Q ss_pred CCCCceeEEEEEecCC
Q psy12137 177 GKSNDYLGCLELCCNS 192 (224)
Q Consensus 177 ~~~~~~lG~~~l~l~~ 192 (224)
.+++++||++.+++..
T Consensus 73 ~~~~~~iG~~~i~l~~ 88 (125)
T cd04021 73 LKADVLLGEASLDLSD 88 (125)
T ss_pred CCCCcEEEEEEEEHHH
Confidence 8889999999999875
No 97
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.60 E-value=1.2e-14 Score=95.45 Aligned_cols=85 Identities=36% Similarity=0.588 Sum_probs=73.6
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCC
Q psy12137 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 179 (224)
Q Consensus 100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~ 179 (224)
|.|.|++|+||+..+..+..+||+++.+..... ..++|++++++.+|.|+|+|.|.+..... ..|.|+||+++..++
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~-~~~~T~~~~~~~~P~w~e~~~~~~~~~~~--~~l~~~V~~~~~~~~ 77 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES-TKYKTKVKKNTSNPVWNEEFEFPLDDPDL--DSLSFEVWDKDSFGK 77 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC-EEEEECCBSSBSSEEEEEEEEEEESHGCG--TEEEEEEEEETSSSS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeee-eeeeeeeeeccccceeeeeeeeeeecccc--cceEEEEEECCCCCC
Confidence 689999999999888788999999999965432 67999999999999999999999755444 459999999999888
Q ss_pred CceeEEEE
Q psy12137 180 NDYLGCLE 187 (224)
Q Consensus 180 ~~~lG~~~ 187 (224)
+++||++.
T Consensus 78 ~~~iG~~~ 85 (85)
T PF00168_consen 78 DELIGEVK 85 (85)
T ss_dssp EEEEEEEE
T ss_pred CCEEEEEC
Confidence 99999974
No 98
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.59 E-value=2.4e-15 Score=104.04 Aligned_cols=60 Identities=18% Similarity=0.319 Sum_probs=54.1
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceee
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCL 61 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~ 61 (224)
+|+||+|||+|.| .|+.+++....|.|.|||+|++++ ++||++.++++++....+.+.|.
T Consensus 56 ktlnPvfnE~f~F-~v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~ 116 (118)
T cd08677 56 LALHTQWEEELVF-PLPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWV 116 (118)
T ss_pred CCCCCccccEEEE-eCCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchh
Confidence 6999999999999 799999999999999999999999 99999999999886665555554
No 99
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.55 E-value=1.2e-13 Score=123.91 Aligned_cols=104 Identities=40% Similarity=0.509 Sum_probs=87.3
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137 97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 176 (224)
Q Consensus 97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~ 176 (224)
.|.|.|.+..|.||+..+.+|.+||||++.+. ++..++|+++++++||.|||.|...+... ....+.|.|+|++.
T Consensus 1039 sG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln---~k~vyktkv~KktlNPvwNEe~~i~v~~r--~~D~~~i~v~Dwd~ 1113 (1227)
T COG5038 1039 SGYLTIMLRSGENLPSSDENGYSDPFVKLFLN---EKSVYKTKVVKKTLNPVWNEEFTIEVLNR--VKDVLTINVNDWDS 1113 (1227)
T ss_pred cCcEEEEEeccCCCcccccCCCCCceEEEEec---ceecccccchhccCCCCccccceEeeecc--ccceEEEEEeeccc
Confidence 78899999999999999999999999999984 33689999999999999999999998533 24689999999999
Q ss_pred CCCCceeEEEEEecCCCCC-ccchhhhhhc
Q psy12137 177 GKSNDYLGCLELCCNSKGD-RLRHWVDMMK 205 (224)
Q Consensus 177 ~~~~~~lG~~~l~l~~~~~-~~~~w~~l~~ 205 (224)
..+++.||.+.++|..... ....|.=.++
T Consensus 1114 ~~knd~lg~~~idL~~l~~~~~~n~~i~ld 1143 (1227)
T COG5038 1114 GEKNDLLGTAEIDLSKLEPGGTTNSNIPLD 1143 (1227)
T ss_pred CCCccccccccccHhhcCcCCccceeeecc
Confidence 9999999999999997543 3334433333
No 100
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.55 E-value=2e-13 Score=122.52 Aligned_cols=90 Identities=26% Similarity=0.340 Sum_probs=76.7
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137 97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 176 (224)
Q Consensus 97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~ 176 (224)
.|.++|.|..|.++......+.+|||+++.+. +..+.+|-.+..+.+|.|++...-.+. .. ...|.+.++++..
T Consensus 710 Ig~irv~v~~andl~n~i~g~~~dPya~v~~n---~~~k~rti~~~~~~npiw~~i~Yv~v~--sk-~~r~~l~~~~~~~ 783 (1227)
T COG5038 710 IGAIRVSVRKANDLRNEIPGGKSDPYATVLVN---NLVKYRTIYGSSTLNPIWNEILYVPVT--SK-NQRLTLECMDYEE 783 (1227)
T ss_pred cceEEEEeehhhcccccccCcccccceEEEec---ceeEEEEecccCccccceeeeEEEEec--CC-ccEEeeeeecchh
Confidence 77899999999999987788999999999883 237889999999999999998877763 22 2468889999998
Q ss_pred CCCCceeEEEEEecCC
Q psy12137 177 GKSNDYLGCLELCCNS 192 (224)
Q Consensus 177 ~~~~~~lG~~~l~l~~ 192 (224)
.+.|..+|++.+..+.
T Consensus 784 sgddr~lg~~~i~vsn 799 (1227)
T COG5038 784 SGDDRNLGEVNINVSN 799 (1227)
T ss_pred ccccceeceeeeeeee
Confidence 8899999999999885
No 101
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.53 E-value=9.5e-14 Score=96.32 Aligned_cols=71 Identities=28% Similarity=0.420 Sum_probs=61.4
Q ss_pred CCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCCCceeEEEEEecCC
Q psy12137 115 SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS 192 (224)
Q Consensus 115 ~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~ 192 (224)
..|.+||||++++ +. ...+|++++++.+|.|||.|.|.+. +.....|.|.||+++.+ ++++||.+.++|..
T Consensus 9 ~~G~~dPYv~v~v----~~~~~~kT~v~~~t~nP~Wne~f~f~v~--~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~ 80 (111)
T cd04052 9 KTGLLSPYAELYL----NGKLVYTTRVKKKTNNPSWNASTEFLVT--DRRKSRVTVVVKDDRDR-HDPVLGSVSISLND 80 (111)
T ss_pred cCCCCCceEEEEE----CCEEEEEEeeeccCCCCccCCceEEEec--CcCCCEEEEEEEECCCC-CCCeEEEEEecHHH
Confidence 4688999999999 34 5679999999999999999999984 33456899999999988 89999999999875
No 102
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.51 E-value=6.9e-14 Score=98.03 Aligned_cols=76 Identities=14% Similarity=0.256 Sum_probs=58.5
Q ss_pred CCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeecc-ccCCCcccceeecccccccCCCcccccCcc
Q psy12137 2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLN-RLRPHISRDLCLNLCKHYPVPREEEVWGEE 79 (224)
Q Consensus 2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~-~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 79 (224)
++||+|||+|.| .+... ...|.|+|||.|.+++ ++||++.|+|. .+......+.|++|.+ . .
T Consensus 44 ~~nP~WNe~F~f-~v~~~---~~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~------~------~ 107 (121)
T cd04016 44 AKNPRWNKTIQC-TLPEG---VDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSG------K------Q 107 (121)
T ss_pred CCCCccCeEEEE-EecCC---CcEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcC------c------c
Confidence 689999999999 56543 4679999999999998 99999999996 4555544555555543 1 1
Q ss_pred cceeceEEEEEEEE
Q psy12137 80 ECWQHGKIFLTLCF 93 (224)
Q Consensus 80 ~~~~~g~l~i~~~~ 93 (224)
.....|+|++++.|
T Consensus 108 ~~~~~g~i~l~l~y 121 (121)
T cd04016 108 GEDKEGMINLVFSY 121 (121)
T ss_pred CCCCceEEEEEEeC
Confidence 12577999999987
No 103
>PLN03008 Phospholipase D delta
Probab=99.50 E-value=1.8e-13 Score=120.58 Aligned_cols=84 Identities=20% Similarity=0.326 Sum_probs=66.2
Q ss_pred CCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCCCceeEEEEEecCCC--C
Q psy12137 117 GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--G 194 (224)
Q Consensus 117 g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~--~ 194 (224)
+++||||++.+. +.+..+|++++++.||+|||+|.|.+.. . ...|.|+|||++.++ +++||++.|++... |
T Consensus 75 ~tSDPYV~I~Lg---~~rv~RTrVi~n~~NPvWNE~F~f~vah--~-~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~G 147 (868)
T PLN03008 75 ITSDPYVTVVVP---QATLARTRVLKNSQEPLWDEKFNISIAH--P-FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASG 147 (868)
T ss_pred CCCCceEEEEEC---CcceeeEEeCCCCCCCCcceeEEEEecC--C-CceEEEEEEcCCccC-CceeEEEEEEHHHcCCC
Confidence 467999999992 2356799999999999999999999864 2 368999999999997 58999999999863 3
Q ss_pred CccchhhhhhcCC
Q psy12137 195 DRLRHWVDMMKYP 207 (224)
Q Consensus 195 ~~~~~w~~l~~~~ 207 (224)
...+.|++++..-
T Consensus 148 e~vd~Wl~Ll~~~ 160 (868)
T PLN03008 148 ERISGWFPVLGAS 160 (868)
T ss_pred CceEEEEEccccC
Confidence 4444555555433
No 104
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.47 E-value=1.3e-13 Score=96.48 Aligned_cols=65 Identities=22% Similarity=0.254 Sum_probs=55.5
Q ss_pred CCCCCeeccEEEECccCcc-ccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeeccccc
Q psy12137 1 RTINPEFHEKLTFYSVSET-DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKH 66 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~-~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~ 66 (224)
+|+||+|||+|.| .++.+ ++....|+|.|||+|..++ ++||++.++|.++........|++|.+.
T Consensus 47 ~tlnPvwNE~f~F-~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~ 113 (120)
T cd08395 47 NNWSPKYNETFQF-ILGNEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRR 113 (120)
T ss_pred CCCCCccCcEEEE-EeeCcCCCceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCc
Confidence 5899999999999 66643 5666789999999997777 8999999999999988888888888653
No 105
>KOG1328|consensus
Probab=99.46 E-value=4.1e-14 Score=121.18 Aligned_cols=111 Identities=34% Similarity=0.539 Sum_probs=101.3
Q ss_pred eeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC---CeEeeeeeeCCCCCeeceEEEEEee
Q psy12137 82 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK---RKYKTGVKWKTLNPIFNEEFAIETK 158 (224)
Q Consensus 82 ~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~---~~~~T~~~~~~~~p~~~e~f~f~~~ 158 (224)
...|.+.+.+.|......|.|.|+.|+++.+.|.+|.+||||.+.+.+.... ..++|.++.+++||+|+|+|.|.++
T Consensus 931 ~~fg~lsvr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp 1010 (1103)
T KOG1328|consen 931 HQFGVLSVRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVP 1010 (1103)
T ss_pred CcCCceEEEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecC
Confidence 5668899999999999999999999999999999999999999999876533 5789999999999999999999998
Q ss_pred cCccc--ccEEEEEEEECCCCCCCceeEEEEEecCC
Q psy12137 159 ITELS--KQTLVITVWDKDYGKSNDYLGCLELCCNS 192 (224)
Q Consensus 159 ~~~~~--~~~l~i~v~~~~~~~~~~~lG~~~l~l~~ 192 (224)
++... .+.|.|+|+|+|..+.++|-|++.+.|+.
T Consensus 1011 ~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~ 1046 (1103)
T KOG1328|consen 1011 PEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGD 1046 (1103)
T ss_pred ccccccccceEEEEeeccceecccccchHHHHhhCC
Confidence 87766 57899999999999999999999999985
No 106
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.45 E-value=3.5e-13 Score=128.64 Aligned_cols=100 Identities=21% Similarity=0.179 Sum_probs=80.7
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECC
Q psy12137 97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 175 (224)
Q Consensus 97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~ 175 (224)
.|.|.|+|++|.||. +..|.+||||++.+ ++ .++||++++++.||.|||.|+|.+... ..+..|.|+|||+|
T Consensus 1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~----g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p-~~~~~l~iev~d~d 2051 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTL----GNGPPRQTKVVSHSSSPEWKEGFTWAFDSP-PKGQKLHISCKSKN 2051 (2102)
T ss_pred CcceEEEEeeccccc--cccCCCCCeEEEEE----CCCCcccccccCCCCCCCcccceeeeecCC-CCCCceEEEEEecC
Confidence 789999999999997 45689999999999 54 588999999999999999999887422 22357999999999
Q ss_pred CCCCCceeEEEEEecCCC--CCccchhhhhh
Q psy12137 176 YGKSNDYLGCLELCCNSK--GDRLRHWVDMM 204 (224)
Q Consensus 176 ~~~~~~~lG~~~l~l~~~--~~~~~~w~~l~ 204 (224)
.+++ +.||.+.+++... +..+..||.+.
T Consensus 2052 ~f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~ 2081 (2102)
T PLN03200 2052 TFGK-SSLGKVTIQIDRVVMEGTYSGEYSLN 2081 (2102)
T ss_pred ccCC-CCCceEEEEHHHHhcCceeeeeeecC
Confidence 9954 5999999999862 33444455554
No 107
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.44 E-value=6.1e-13 Score=93.73 Aligned_cols=79 Identities=28% Similarity=0.392 Sum_probs=64.4
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE 79 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 79 (224)
+|+||+|||+|.| .+.. + .+.|.|+|||++..++ ++||++.++++++......+.|++|.+. .
T Consensus 42 ~t~nP~Wne~f~f-~v~~--~-~~~l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~------------~ 105 (121)
T cd04042 42 KNLNPVWDEKFTL-PIED--V-TQPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDP------------N 105 (121)
T ss_pred CCCCCccceeEEE-EecC--C-CCeEEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCC------------C
Confidence 5899999999999 4543 3 5789999999999988 9999999999999877777777777542 1
Q ss_pred cceeceEEEEEEEEeC
Q psy12137 80 ECWQHGKIFLTLCFST 95 (224)
Q Consensus 80 ~~~~~g~l~i~~~~~~ 95 (224)
.....|+|.+.+.|.+
T Consensus 106 ~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 106 SDEDLGYISLVVTLTP 121 (121)
T ss_pred CccCceEEEEEEEECC
Confidence 1267899999998753
No 108
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.43 E-value=6.6e-13 Score=93.44 Aligned_cols=78 Identities=21% Similarity=0.355 Sum_probs=61.2
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE 79 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 79 (224)
+|+||+|||+|.| .++.. ...|.|.|||.+.+++ ++||++.++++++........|++|++.. .
T Consensus 43 kt~~P~WnE~F~f-~v~~~---~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~-----------~ 107 (121)
T cd08401 43 KSLCPFFGEDFYF-EIPRT---FRHLSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPVD-----------A 107 (121)
T ss_pred CCCCCccCCeEEE-EcCCC---CCEEEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEccC-----------C
Confidence 5899999999999 57654 4699999999999988 99999999999997666666666665421 0
Q ss_pred cceeceEEEEEEEE
Q psy12137 80 ECWQHGKIFLTLCF 93 (224)
Q Consensus 80 ~~~~~g~l~i~~~~ 93 (224)
.....|+|++++.+
T Consensus 108 ~~~~~G~i~l~~~~ 121 (121)
T cd08401 108 DSEVQGKVHLELRL 121 (121)
T ss_pred CCcccEEEEEEEEC
Confidence 12358999988753
No 109
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.43 E-value=7e-13 Score=94.08 Aligned_cols=80 Identities=23% Similarity=0.399 Sum_probs=59.1
Q ss_pred CCCCCeeccEEEECccCc---cccccCeEEEEEEeCCCCCC-ccceeEEeeccccCC--CcccceeecccccccCCCccc
Q psy12137 1 RTINPEFHEKLTFYSVSE---TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP--HISRDLCLNLCKHYPVPREEE 74 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~---~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~--~~~~~~~~~l~~~~~l~~~~~ 74 (224)
+|+||+|||+|.| .++. ++.....|.|.|||++.+++ ++||++.|+|+++.. ......|++|.. ..
T Consensus 40 ~t~nP~Wne~f~F-~v~~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~------~~- 111 (126)
T cd08682 40 KTTSPVWKEECSF-ELPGLLSGNGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLES------KP- 111 (126)
T ss_pred CCCCCEeCceEEE-EecCcccCCCcCCEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcC------CC-
Confidence 5799999999999 5655 34567899999999999988 999999999999863 333444444432 11
Q ss_pred ccCcccceeceEEEEEE
Q psy12137 75 VWGEEECWQHGKIFLTL 91 (224)
Q Consensus 75 ~~~~~~~~~~g~l~i~~ 91 (224)
.......|+|++++
T Consensus 112 ---~~~~~~~Gei~l~~ 125 (126)
T cd08682 112 ---GKDDKERGEIEVDI 125 (126)
T ss_pred ---CCCccccceEEEEe
Confidence 11235789998876
No 110
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.42 E-value=4.3e-12 Score=85.57 Aligned_cols=92 Identities=38% Similarity=0.506 Sum_probs=76.5
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCC
Q psy12137 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 179 (224)
Q Consensus 100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~ 179 (224)
+.+.|++|++|......+..+|||++++.... ....+|+...++.+|.|||.|.|.+.... ...|.|+||+.+..++
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~-~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~~l~i~v~~~~~~~~ 78 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDP-KEKKKTKVVKNTLNPVWNETFEFEVPPPE--LAELEIEVYDKDRFGR 78 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc-cceEeeeEecCCCCCcccceEEEEecCcc--cCEEEEEEEecCCccC
Confidence 67899999999887665678999999985332 25789999998889999999999985432 5799999999988777
Q ss_pred CceeEEEEEecCCCC
Q psy12137 180 NDYLGCLELCCNSKG 194 (224)
Q Consensus 180 ~~~lG~~~l~l~~~~ 194 (224)
+.++|.+.+++....
T Consensus 79 ~~~~G~~~~~l~~~~ 93 (101)
T smart00239 79 DDFIGQVTIPLSDLL 93 (101)
T ss_pred CceeEEEEEEHHHcc
Confidence 899999999987644
No 111
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.42 E-value=4e-13 Score=95.15 Aligned_cols=62 Identities=29% Similarity=0.480 Sum_probs=54.0
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 63 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l 63 (224)
+|+||+|||+|.| .++.+++....|.|.|||++.+++ ++||++.++|+++..+.....|.+|
T Consensus 62 ~t~nP~~nE~f~f-~v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 62 KTLNPVFNETLRY-KVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred CCCCCccCceEEE-ECCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 5899999999999 688888888999999999999998 9999999999999766655555544
No 112
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=99.40 E-value=3.7e-13 Score=86.05 Aligned_cols=100 Identities=21% Similarity=0.317 Sum_probs=81.8
Q ss_pred EEEEEEeecCCCCCCCC-CCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCC
Q psy12137 101 IVNLIKCTNLIPMDSNG-FSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 179 (224)
Q Consensus 101 ~v~i~~a~~L~~~~~~g-~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~ 179 (224)
-++++++++|......| .+..|++.-+.-+ +-..+||++++++.||+|+|+|+|.+...+++.-.|.|.|+. .+.+
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~-kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~R 78 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLP-KPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPR 78 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecC-CCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCc
Confidence 47889999997765543 4456777655321 237899999999999999999999988899999999999998 4457
Q ss_pred CceeEEEEEecCCCC-Cccchhhhh
Q psy12137 180 NDYLGCLELCCNSKG-DRLRHWVDM 203 (224)
Q Consensus 180 ~~~lG~~~l~l~~~~-~~~~~w~~l 203 (224)
++.||.+.+++++.| ++..||.++
T Consensus 79 Ke~iG~~sL~l~s~geeE~~HW~e~ 103 (103)
T cd08684 79 KRTIGECSLSLRTLSTQETDHWLEI 103 (103)
T ss_pred cceeeEEEeecccCCHHHhhhhhcC
Confidence 889999999999988 788999763
No 113
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.40 E-value=5.5e-13 Score=93.99 Aligned_cols=63 Identities=29% Similarity=0.458 Sum_probs=53.1
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 63 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l 63 (224)
+|+||+|||+|.|..++.+++....|+|.|||+|.+++ ++||++.++|+++........|++|
T Consensus 58 ~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 58 KTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 58999999999994337788888999999999999998 9999999999999866555555443
No 114
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.39 E-value=6.5e-12 Score=84.43 Aligned_cols=89 Identities=40% Similarity=0.600 Sum_probs=75.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCCC
Q psy12137 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 179 (224)
Q Consensus 100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~ 179 (224)
|.|.|++|+++......+..+|||.+.+.. ....+|++..++.+|.|++.|.|.+... ....|.|+||+.+..+.
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~---~~~~~T~~~~~~~~P~w~~~~~~~~~~~--~~~~l~i~v~~~~~~~~ 75 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG---KQKFKTKVVKNTLNPVWNETFEFPVLDP--ESDTLTVEVWDKDRFSK 75 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc---CceEecceeCCCCCCcccceEEEEccCC--CCCEEEEEEEecCCCCC
Confidence 468999999998766667899999999842 3788999999999999999999998542 34689999999988777
Q ss_pred CceeEEEEEecCCC
Q psy12137 180 NDYLGCLELCCNSK 193 (224)
Q Consensus 180 ~~~lG~~~l~l~~~ 193 (224)
+.+||++.+++...
T Consensus 76 ~~~ig~~~~~l~~l 89 (102)
T cd00030 76 DDFLGEVEIPLSEL 89 (102)
T ss_pred CceeEEEEEeHHHh
Confidence 88999999998764
No 115
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.39 E-value=8.3e-13 Score=93.37 Aligned_cols=63 Identities=25% Similarity=0.385 Sum_probs=56.0
Q ss_pred CCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeeccc
Q psy12137 2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 64 (224)
Q Consensus 2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~ 64 (224)
++||+|||+|.|..++.+++....|+|.|||++.+++ ++||++.|+|+++........|++|+
T Consensus 60 ~~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 60 GPNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred CCCCcccCEEEECCCCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 4899999999995588899999999999999999998 99999999999998777777777664
No 116
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.39 E-value=2.5e-12 Score=91.22 Aligned_cols=82 Identities=28% Similarity=0.326 Sum_probs=64.5
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE 79 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 79 (224)
+|+||+|||+|.| .+... ...|.|+|||++..++ ++||++.+++.++........|+++.... ..
T Consensus 40 ~t~nP~Wne~f~f-~~~~~---~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~----------~~ 105 (126)
T cd08678 40 NTSNPFWDEHFLF-ELSPN---SKELLFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRP----------YE 105 (126)
T ss_pred cCCCCccCceEEE-EeCCC---CCEEEEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCCC----------CC
Confidence 5799999999999 56543 6789999999999988 99999999999998766665566664310 01
Q ss_pred cceeceEEEEEEEEeCC
Q psy12137 80 ECWQHGKIFLTLCFSTK 96 (224)
Q Consensus 80 ~~~~~g~l~i~~~~~~~ 96 (224)
.....|+|.+.+.|...
T Consensus 106 ~~~~~G~l~l~~~~~~~ 122 (126)
T cd08678 106 GDSVSGSITVEFLFMEP 122 (126)
T ss_pred CCCcceEEEEEEEEecc
Confidence 23679999999999764
No 117
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.39 E-value=1.6e-12 Score=93.07 Aligned_cols=85 Identities=25% Similarity=0.449 Sum_probs=64.1
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE 79 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 79 (224)
+|+||+|||+|.| .+... ...|.|.|||++.+++ ++||++.+++.++......+.......|++|++...
T Consensus 48 ~t~nP~Wne~f~f-~~~~~---~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~----- 118 (133)
T cd04033 48 KTLNPKWNEEFFF-RVNPR---EHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSS----- 118 (133)
T ss_pred CCCCCcEeeEEEE-EEcCC---CCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCC-----
Confidence 5899999999999 56543 4689999999999988 999999999999976644332223445676653211
Q ss_pred cceeceEEEEEEEEe
Q psy12137 80 ECWQHGKIFLTLCFS 94 (224)
Q Consensus 80 ~~~~~g~l~i~~~~~ 94 (224)
.....|+|++++.|.
T Consensus 119 ~~~~~G~l~~~~~~~ 133 (133)
T cd04033 119 KSRVKGHLRLYMAYL 133 (133)
T ss_pred CCcceeEEEEEEeeC
Confidence 135799999999873
No 118
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.39 E-value=7.8e-13 Score=93.62 Aligned_cols=62 Identities=34% Similarity=0.662 Sum_probs=54.8
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 63 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l 63 (224)
+++||+|||+|.| .++.+++....|.|.|||++.+++ ++||++.++|.++........|++|
T Consensus 62 ~t~nP~wnE~f~f-~i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 62 NTTNPVYNETLKY-SISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred CCCCCcccceEEE-ECCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 5799999999999 688888888899999999999998 9999999999999877766666554
No 119
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.39 E-value=3.1e-12 Score=90.74 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=62.4
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE 79 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 79 (224)
+++||.|||+|.|. +...+ ...|.|.|||.+..++ ++||++.++|+++......+.|+++.+.. ..
T Consensus 42 ~~~nP~WnE~f~f~-~~~~~--~~~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~----------~~ 108 (126)
T cd08400 42 EGPNPVWSEEFVFD-DLPPD--VNSFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSAS----------PL 108 (126)
T ss_pred CCCCCccCCEEEEe-cCCCC--cCEEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCC----------CC
Confidence 47899999999994 43332 2578999999999988 99999999999997766555555554421 01
Q ss_pred cceeceEEEEEEEEeC
Q psy12137 80 ECWQHGKIFLTLCFST 95 (224)
Q Consensus 80 ~~~~~g~l~i~~~~~~ 95 (224)
.....|+|++++.|..
T Consensus 109 ~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 109 KGGEWGSLRIRARYSH 124 (126)
T ss_pred CCCcCcEEEEEEEEEc
Confidence 2367899999999975
No 120
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.38 E-value=2e-12 Score=93.79 Aligned_cols=64 Identities=33% Similarity=0.412 Sum_probs=51.6
Q ss_pred CCCCCeeccEEEECcc-------------CccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC-cccceeecccc
Q psy12137 1 RTINPEFHEKLTFYSV-------------SETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH-ISRDLCLNLCK 65 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v-------------~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~-~~~~~~~~l~~ 65 (224)
+|+||+|||+|.| .+ +.+++....|.|.|||++..++ ++||++.|+|..+... .....|++|.+
T Consensus 44 ~t~nP~wNE~F~F-~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~ 122 (148)
T cd04010 44 KTNNPQFDEAFYF-DVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP 122 (148)
T ss_pred CCCCCccceEEEE-EEecccccccccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCC
Confidence 5899999999999 45 3445656789999999998888 9999999999999765 44555666554
No 121
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.37 E-value=2.6e-12 Score=91.26 Aligned_cols=81 Identities=30% Similarity=0.395 Sum_probs=60.0
Q ss_pred CCCCCeeccEEEECccC-ccccccCeEEEEEEeCCCCC-C-ccceeEEeeccccCC-CcccceeecccccccCCCccccc
Q psy12137 1 RTINPEFHEKLTFYSVS-ETDLSLQSLHILVLDDDKYG-H-DFLGEARFPLNRLRP-HISRDLCLNLCKHYPVPREEEVW 76 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~-~~~~~~~~l~i~v~d~d~~~-~-~~lG~~~i~l~~~~~-~~~~~~~~~l~~~~~l~~~~~~~ 76 (224)
+++||+|||+|.| .+. ...+....|.|.|||.+.++ + ++||++.++++++.. ......|++|+..
T Consensus 41 ~t~nP~Wne~f~f-~~~~~~~~~~~~l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~---------- 109 (127)
T cd04022 41 KDLNPVWNEKLVF-NVSDPSRLSNLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKR---------- 109 (127)
T ss_pred CCCCCccceEEEE-EccCHHHccCCeEEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeC----------
Confidence 5899999999999 454 34445678999999999886 6 999999999999973 3444455555431
Q ss_pred CcccceeceEEEEEEEE
Q psy12137 77 GEEECWQHGKIFLTLCF 93 (224)
Q Consensus 77 ~~~~~~~~g~l~i~~~~ 93 (224)
......+|+|.+++.+
T Consensus 110 -~~~~~~~G~l~l~~~~ 125 (127)
T cd04022 110 -GLFSRVRGEIGLKVYI 125 (127)
T ss_pred -CCCCCccEEEEEEEEE
Confidence 1112468999998875
No 122
>KOG1011|consensus
Probab=99.37 E-value=7.9e-13 Score=112.43 Aligned_cols=106 Identities=27% Similarity=0.523 Sum_probs=92.7
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137 97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 176 (224)
Q Consensus 97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~ 176 (224)
...++++|+.|.+|...+..|.+||||.+.+ ++.+++|+.+...+||+|||.|.|.... ....|++.|||.|.
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv----~ktkrrtrti~~~lnpvw~ekfhfechn---stdrikvrvwded~ 366 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQV----GKTKRRTRTIHQELNPVWNEKFHFECHN---STDRIKVRVWDEDN 366 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEee----cccchhhHhhhhccchhhhhheeeeecC---CCceeEEEEecCcc
Confidence 5689999999999999999999999999998 7889999999999999999999999742 24689999999773
Q ss_pred C-----------CCCceeEEEEEecCCCCCccchhhhhhcCCCc
Q psy12137 177 G-----------KSNDYLGCLELCCNSKGDRLRHWVDMMKYPDH 209 (224)
Q Consensus 177 ~-----------~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~ 209 (224)
- .+|+|+|+..|.+...+.+.+-||.|-..-++
T Consensus 367 dlksklrqkl~resddflgqtvievrtlsgemdvwynlekrtdk 410 (1283)
T KOG1011|consen 367 DLKSKLRQKLTRESDDFLGQTVIEVRTLSGEMDVWYNLEKRTDK 410 (1283)
T ss_pred cHHHHHHHHhhhcccccccceeEEEEecccchhhhcchhhccch
Confidence 2 56889999999999988889999999765543
No 123
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.37 E-value=5.1e-12 Score=89.77 Aligned_cols=84 Identities=20% Similarity=0.285 Sum_probs=65.8
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE 79 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 79 (224)
+++||+|||+|.| .+.......+.|.|+|||++..++ ++||++.++|+++........|.+|.+. .
T Consensus 35 ~~~nP~Wne~f~f-~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~------------~ 101 (127)
T cd08373 35 NELNPVWNETFEW-PLAGSPDPDESLEIVVKDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLLDS------------N 101 (127)
T ss_pred CCcCCcccceEEE-EeCCCcCCCCEEEEEEEECCCCCCCceEEEEEEEhhHcccCCceEEEEeCcCC------------C
Confidence 5789999999999 454332357899999999999888 9999999999999877766666666431 1
Q ss_pred cceeceEEEEEEEEeCCC
Q psy12137 80 ECWQHGKIFLTLCFSTKK 97 (224)
Q Consensus 80 ~~~~~g~l~i~~~~~~~~ 97 (224)
.....|+|.+.+.|.+..
T Consensus 102 ~~~~~~~l~l~~~~~~~~ 119 (127)
T cd08373 102 GRPTGATISLEVSYQPPD 119 (127)
T ss_pred CCcccEEEEEEEEEeCCC
Confidence 124568999999998753
No 124
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.36 E-value=3.5e-12 Score=89.57 Aligned_cols=74 Identities=20% Similarity=0.368 Sum_probs=60.0
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE 79 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 79 (224)
+|+||+|||+|.| .+... ....|.|+|||.|.. + ++||++.+++.++........|+++.+
T Consensus 44 ~t~nP~Wne~f~f-~i~~~--~~~~l~v~v~d~d~~-~~~~iG~~~~~l~~l~~g~~~~~~~~L~~-------------- 105 (119)
T cd04036 44 NSINPVWNETFEF-RIQSQ--VKNVLELTVMDEDYV-MDDHLGTVLFDVSKLKLGEKVRVTFSLNP-------------- 105 (119)
T ss_pred CCCCCccceEEEE-EeCcc--cCCEEEEEEEECCCC-CCcccEEEEEEHHHCCCCCcEEEEEECCC--------------
Confidence 5789999999999 56544 356799999999988 7 999999999999987777777777743
Q ss_pred cceeceEEEEEEEEe
Q psy12137 80 ECWQHGKIFLTLCFS 94 (224)
Q Consensus 80 ~~~~~g~l~i~~~~~ 94 (224)
...|+|.+.+..+
T Consensus 106 --~~~g~l~~~~~~~ 118 (119)
T cd04036 106 --QGKEELEVEFLLE 118 (119)
T ss_pred --CCCceEEEEEEee
Confidence 4578888877653
No 125
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.36 E-value=3.6e-12 Score=89.07 Aligned_cols=74 Identities=27% Similarity=0.463 Sum_probs=60.5
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE 79 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 79 (224)
+|+||.|||+|.| .+... ..+.|.|.|||++..++ ++||++.++|+++........|++|.+
T Consensus 41 ~t~nP~Wne~f~f-~~~~~--~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-------------- 103 (116)
T cd08376 41 KTLNPQWLEQFDL-HLFDD--QSQILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELED-------------- 103 (116)
T ss_pred CCCCCceeEEEEE-EecCC--CCCEEEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccC--------------
Confidence 5899999999999 45432 46799999999999888 999999999999987777777777743
Q ss_pred cceeceEEEEEEEEe
Q psy12137 80 ECWQHGKIFLTLCFS 94 (224)
Q Consensus 80 ~~~~~g~l~i~~~~~ 94 (224)
..|+|++.+.|.
T Consensus 104 ---~~G~~~~~~~~~ 115 (116)
T cd08376 104 ---GEGSLLLLLTLT 115 (116)
T ss_pred ---CCcEEEEEEEec
Confidence 259998888763
No 126
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.35 E-value=1.5e-12 Score=91.81 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=50.1
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI 55 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~ 55 (224)
+++||+|||+|.| .|+.+++....|+|.|||++++++ ++||++.|+|+++....
T Consensus 61 ~t~nPvfnE~F~f-~v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~ 115 (124)
T cd08680 61 DQDKPVFNEVFRV-PISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSE 115 (124)
T ss_pred CCCCCccccEEEE-ECCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCC
Confidence 5899999999999 699999999999999999999988 99999999999996554
No 127
>KOG0905|consensus
Probab=99.35 E-value=1.6e-12 Score=116.48 Aligned_cols=111 Identities=26% Similarity=0.360 Sum_probs=99.5
Q ss_pred eeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEE-eec
Q psy12137 82 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIE-TKI 159 (224)
Q Consensus 82 ~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~-~~~ 159 (224)
+..|+|.++++|. .++|.|.|..+++|+-...+..+||||+.++.++..+ .++||++.+++.+|.|||..++. ++.
T Consensus 1510 ~iggqV~LsIsY~--~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~ 1587 (1639)
T KOG0905|consen 1510 EIGGQVKLSISYN--NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPK 1587 (1639)
T ss_pred ccCceEEEEEEEc--CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCch
Confidence 4567999999997 8999999999999987777778999999999998867 78899999999999999999998 776
Q ss_pred CcccccEEEEEEEECCCCCCCceeEEEEEecCCCC
Q psy12137 160 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG 194 (224)
Q Consensus 160 ~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~ 194 (224)
+.+.+..|.++||..+....+.++|.+.|+|....
T Consensus 1588 ~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~ 1622 (1639)
T KOG0905|consen 1588 EILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVD 1622 (1639)
T ss_pred hhhhhheeeeeeecccceeeeeeeeeeecchhhcc
Confidence 77778899999999998888999999999998644
No 128
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.35 E-value=5.4e-12 Score=88.80 Aligned_cols=83 Identities=28% Similarity=0.440 Sum_probs=58.9
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCCCcccceeecccccccCCCcccccCccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEE 80 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ 80 (224)
+|+||+|||+|.|. + .++....|.|.|||++..+.++||++.++|+++....... ......|+.|.... .
T Consensus 37 ~t~nP~Wne~F~f~-~--~~~~~~~L~~~v~d~d~~~~~~lG~~~i~l~~l~~~~~~~-~~~~~~W~~L~~~~------~ 106 (121)
T cd08378 37 RTSNPEWNQVFAFS-K--DRLQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRVPPD-SPLAPQWYRLEDKK------G 106 (121)
T ss_pred CCCCCccceEEEEE-c--CCCcCCEEEEEEEeCCCCcCceeeeEEEEhHhCcCCCCCC-CCCCcceEEccCCC------C
Confidence 58999999999995 3 3445789999999999773399999999999996432110 00123455554321 1
Q ss_pred ceeceEEEEEEEE
Q psy12137 81 CWQHGKIFLTLCF 93 (224)
Q Consensus 81 ~~~~g~l~i~~~~ 93 (224)
...+|+|++++.|
T Consensus 107 ~~~~G~i~l~~~~ 119 (121)
T cd08378 107 GRVGGELMLAVWF 119 (121)
T ss_pred CccceEEEEEEEe
Confidence 3678999998875
No 129
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.35 E-value=2e-12 Score=91.75 Aligned_cols=54 Identities=31% Similarity=0.425 Sum_probs=49.3
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI 55 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~ 55 (224)
+|+||+|||+|.| .++.+++....|.|.|||++.+++ ++||++.|+|+++....
T Consensus 62 ~t~nPvfNE~F~f-~v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~ 116 (128)
T cd08392 62 GTVNPVFNETLKY-VVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFED 116 (128)
T ss_pred CCCCCccceEEEE-EcCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCC
Confidence 5799999999999 698988988999999999999888 99999999999996554
No 130
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.34 E-value=2.7e-12 Score=91.22 Aligned_cols=64 Identities=31% Similarity=0.437 Sum_probs=54.3
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC--cccceeeccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH--ISRDLCLNLC 64 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~--~~~~~~~~l~ 64 (224)
+|+||+|||+|.|..++..++....|+|.|||+|.+++ ++||++.++|+++... ....+|+++.
T Consensus 61 ~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 61 KTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred CCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 58999999999996577788877899999999999988 9999999999999655 4566666653
No 131
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.33 E-value=9.1e-12 Score=90.78 Aligned_cols=94 Identities=21% Similarity=0.279 Sum_probs=63.8
Q ss_pred CCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccc-cCcc
Q psy12137 2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEV-WGEE 79 (224)
Q Consensus 2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~-~~~~ 79 (224)
|+||+|||+|.|. ++ +...+.|.|.|||++..++ ++||++.++|.++...... ......|++|.+.... .+..
T Consensus 43 t~nP~WNE~F~f~-v~--~~~~~~l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~--~~~~~~W~~L~~~~~~~~~~k 117 (150)
T cd04019 43 NGNPSWNEELMFV-AA--EPFEDHLILSVEDRVGPNKDEPLGRAVIPLNDIERRVDD--RPVPSRWFSLERPGGAMEQKK 117 (150)
T ss_pred CCCCcccCcEEEE-ec--CccCCeEEEEEEEecCCCCCCeEEEEEEEHHHCcccCCC--CccCCceEECcCCCCcccccc
Confidence 6999999999994 53 3335789999999998878 9999999999998643110 0123445555433210 0112
Q ss_pred cceeceEEEEEEEEeCCCCEE
Q psy12137 80 ECWQHGKIFLTLCFSTKKRAL 100 (224)
Q Consensus 80 ~~~~~g~l~i~~~~~~~~~~l 100 (224)
.....|+|++.+.|.....++
T Consensus 118 ~~k~~g~l~l~i~~~~~~~~~ 138 (150)
T cd04019 118 KRKFASRIHLRLCLDGGYHVL 138 (150)
T ss_pred cCcccccEEEEEEecCcceEe
Confidence 235689999999998654443
No 132
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.31 E-value=7.4e-12 Score=87.74 Aligned_cols=75 Identities=28% Similarity=0.438 Sum_probs=57.4
Q ss_pred CCCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCCCcccceeecccccccCCCcccccCcccc
Q psy12137 2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEEC 81 (224)
Q Consensus 2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 81 (224)
++||+|||+|.| .++.. ..+.|.|+|||++..+.++||++.++++++........|+++.. . .
T Consensus 44 ~~nP~Wne~f~f-~v~~~--~~~~l~i~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~------~--------~ 106 (118)
T cd08681 44 GQHPEWDEELRF-EITED--KKPILKVAVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTL------K--------G 106 (118)
T ss_pred CCCCccCceEEE-EecCC--CCCEEEEEEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEecc------C--------C
Confidence 689999999999 56553 35789999999987655899999999999865544444444432 1 2
Q ss_pred eeceEEEEEEEE
Q psy12137 82 WQHGKIFLTLCF 93 (224)
Q Consensus 82 ~~~g~l~i~~~~ 93 (224)
...|+|.+.+.|
T Consensus 107 ~~~G~i~l~l~f 118 (118)
T cd08681 107 RYAGEVYLELTF 118 (118)
T ss_pred cEeeEEEEEEEC
Confidence 578999998875
No 133
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.31 E-value=4.1e-12 Score=89.88 Aligned_cols=62 Identities=29% Similarity=0.577 Sum_probs=54.5
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 63 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l 63 (224)
+|+||+|||+|.| .++..++....|.|.|||++.+++ ++||++.++|+++........|++|
T Consensus 60 ~t~~P~wne~f~f-~v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 60 KTLNPEFDESFVF-EVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred CCCCCCcccEEEE-eCCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence 5899999999999 688888878899999999999988 9999999999999877666666655
No 134
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.31 E-value=9.4e-12 Score=89.30 Aligned_cols=79 Identities=24% Similarity=0.434 Sum_probs=56.6
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE 79 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 79 (224)
+|+||.|||+|.|. +. ++....|.|+|||.+.+++ ++||++.++|.++....... ..++..+..+
T Consensus 56 ~t~nP~Wne~f~f~-v~--~~~~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~-~~~~~~~~~~---------- 121 (136)
T cd08375 56 DTLNPKWNSSMQFF-VK--DLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKES-KGPITKRLLL---------- 121 (136)
T ss_pred CCCCCccCceEEEE-ec--CccCCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccC-CCcEEEEecc----------
Confidence 58999999999994 53 3446789999999999888 99999999999996521110 0112222222
Q ss_pred cceeceEEEEEEEE
Q psy12137 80 ECWQHGKIFLTLCF 93 (224)
Q Consensus 80 ~~~~~g~l~i~~~~ 93 (224)
+....|+|++.+.+
T Consensus 122 ~~~~~g~i~l~~~~ 135 (136)
T cd08375 122 HEVPTGEVVVKLDL 135 (136)
T ss_pred ccccceeEEEEEEe
Confidence 24678999998875
No 135
>PLN02223 phosphoinositide phospholipase C
Probab=99.30 E-value=2.8e-11 Score=102.82 Aligned_cols=109 Identities=17% Similarity=0.239 Sum_probs=82.6
Q ss_pred CEEEEEEEEeecCCCC-----CCCCCCCcEEEEEEecCCC-CCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEE
Q psy12137 98 RALIVNLIKCTNLIPM-----DSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITV 171 (224)
Q Consensus 98 ~~l~v~i~~a~~L~~~-----~~~g~~dpyv~~~~~~~~~-~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v 171 (224)
..|.|+|+.|.+++.. +.....||||+|.+.+-.. ...++|.+..++.||+|||+|.|.+...++ +.|.|+|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PEL--AlLrf~V 486 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDL--ALISFEV 486 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCc--eEEEEEE
Confidence 4689999999987521 1224579999999864222 256778887788999999999999855444 4899999
Q ss_pred EECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCc
Q psy12137 172 WDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDH 209 (224)
Q Consensus 172 ~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~ 209 (224)
+|+|..++++++|+..+++.+...+++|- .|.+..+.
T Consensus 487 ~D~D~~~~ddfiGQ~~LPv~~Lr~GyR~V-pL~~~~g~ 523 (537)
T PLN02223 487 YDYEVSTADAFCGQTCLPVSELIEGIRAV-PLYDERGK 523 (537)
T ss_pred EecCCCCCCcEEEEEecchHHhcCCceeE-eccCCCcC
Confidence 99998888999999999999877776443 45444443
No 136
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.30 E-value=1.5e-11 Score=86.87 Aligned_cols=81 Identities=23% Similarity=0.318 Sum_probs=59.7
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE 79 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 79 (224)
+|+||+|||+|.|. +... ....|.|.|||++..++ ++||++.++|+++........|+.+.+.... ...
T Consensus 41 ~t~nP~Wne~f~f~-~~~~--~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~-------~~~ 110 (123)
T cd04025 41 KSCYPRWNEVFEFE-LMEG--ADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRA-------EEE 110 (123)
T ss_pred CCCCCccCcEEEEE-cCCC--CCCEEEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCC-------Ccc
Confidence 58999999999994 5443 25789999999999988 9999999999999766555556655442111 122
Q ss_pred cceeceEEEEEE
Q psy12137 80 ECWQHGKIFLTL 91 (224)
Q Consensus 80 ~~~~~g~l~i~~ 91 (224)
.....|.|++.+
T Consensus 111 ~~~~~G~l~~~~ 122 (123)
T cd04025 111 SGGNLGSLRLKV 122 (123)
T ss_pred ccCceEEEEEEe
Confidence 346788887765
No 137
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.30 E-value=6e-12 Score=89.00 Aligned_cols=63 Identities=32% Similarity=0.509 Sum_probs=54.1
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeeccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 64 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~ 64 (224)
+++||+|||+|.| .++..++....|.|.|||++.+++ ++||++.++|+++........|.+|+
T Consensus 60 ~t~nP~wne~f~f-~i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 60 KTLNPVFNETFTF-KVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CCCCCceeeeEEE-eCCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 5799999999999 687777777899999999999988 99999999999997766666666653
No 138
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.29 E-value=1e-11 Score=86.04 Aligned_cols=75 Identities=24% Similarity=0.361 Sum_probs=57.4
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC-cccceeecccccccCCCcccccCc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH-ISRDLCLNLCKHYPVPREEEVWGE 78 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~-~~~~~~~~l~~~~~l~~~~~~~~~ 78 (224)
++.||+|||+|.|. +. +...+.|.|.|||.+.+ + ++||++.++|+++... .....|++|..
T Consensus 34 ~t~nP~Wne~f~f~-v~--~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~~~~w~~L~~------------- 96 (111)
T cd04052 34 KTNNPSWNASTEFL-VT--DRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSVGQQWFPLSG------------- 96 (111)
T ss_pred cCCCCccCCceEEE-ec--CcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhccceeEECCC-------------
Confidence 57899999999994 43 33467899999999988 7 9999999999999543 22334444421
Q ss_pred ccceeceEEEEEEEEeC
Q psy12137 79 EECWQHGKIFLTLCFST 95 (224)
Q Consensus 79 ~~~~~~g~l~i~~~~~~ 95 (224)
...|+|++++.|.+
T Consensus 97 ---~~~G~i~~~~~~~p 110 (111)
T cd04052 97 ---NGQGRIRISALWKP 110 (111)
T ss_pred ---CCCCEEEEEEEEec
Confidence 35799999998865
No 139
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.28 E-value=9.3e-12 Score=89.92 Aligned_cols=61 Identities=25% Similarity=0.367 Sum_probs=50.5
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEE-eCCCCCC-ccceeEEeeccccCCCcccceeecccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVL-DDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK 65 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~-d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~ 65 (224)
+|+||+|||+|.| .++ +....|.|.|| |++.+.+ ++||++.|+|..+........|.+|.+
T Consensus 76 ktlnPvfNE~F~f-~v~---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~ 138 (146)
T cd04028 76 KTLDPLYQQQLVF-DVS---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFP 138 (146)
T ss_pred CCCCCccCCeEEE-EEc---CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCC
Confidence 6899999999999 566 56889999999 6887888 999999999999976665555555544
No 140
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.28 E-value=2e-11 Score=88.87 Aligned_cols=80 Identities=18% Similarity=0.280 Sum_probs=62.5
Q ss_pred CCCCCeeccEEEECccCcc------ccccCeEEEEEEeCCCCC-C-ccceeEEeeccccCCCcccceeecccccccCCCc
Q psy12137 1 RTINPEFHEKLTFYSVSET------DLSLQSLHILVLDDDKYG-H-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPRE 72 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~------~~~~~~l~i~v~d~d~~~-~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~ 72 (224)
+|+||+|||+|.| .|+.. .+....|.|+|||++.+. + ++||++.++|+.+........++++.+.
T Consensus 50 ~TlnPvfNE~f~f-~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~------ 122 (155)
T cd08690 50 DTNSPEYNESFKL-NINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDG------ 122 (155)
T ss_pred CCCCCcccceEEE-EeccccchhhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhC------
Confidence 5899999999999 57655 356778999999999874 5 9999999999999777666656666431
Q ss_pred ccccCcccceeceEEEEEEEEe
Q psy12137 73 EEVWGEEECWQHGKIFLTLCFS 94 (224)
Q Consensus 73 ~~~~~~~~~~~~g~l~i~~~~~ 94 (224)
.....|+|++++..-
T Consensus 123 -------~k~~Gg~l~v~ir~r 137 (155)
T cd08690 123 -------RKATGGKLEVKVRLR 137 (155)
T ss_pred -------CCCcCCEEEEEEEec
Confidence 236778888877643
No 141
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.28 E-value=9.6e-12 Score=88.07 Aligned_cols=64 Identities=27% Similarity=0.485 Sum_probs=54.3
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeeccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 64 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~ 64 (224)
+|+||+|||+|.|..++.+.+....|.|+|||++.+++ ++||++.++++++........|..|.
T Consensus 60 ~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 60 KNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 58999999999995456666767889999999999988 99999999999998777676666653
No 142
>KOG1327|consensus
Probab=99.27 E-value=5.7e-11 Score=100.22 Aligned_cols=174 Identities=24% Similarity=0.301 Sum_probs=133.3
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCC----CC-ccceeEEeeccccCCCcccceeecccccccCCCcccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY----GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEV 75 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~----~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~ 75 (224)
+.+||.|-+.|...+.... .+.|+|.+||.+.. .. +|+|++.+.+..+.........+.++..
T Consensus 50 ~~~~p~f~~~~~l~y~fE~---vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~--------- 117 (529)
T KOG1327|consen 50 NVLNPFFTKKFLLQYRFEK---VQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPG--------- 117 (529)
T ss_pred ccCCccceeeechhheeee---eeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccC---------
Confidence 3589999999988544444 78999999998854 34 8999999999999766544322333221
Q ss_pred cCcccceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC--CeEeeeeeeCCCCCeeceEE
Q psy12137 76 WGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEF 153 (224)
Q Consensus 76 ~~~~~~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~--~~~~T~~~~~~~~p~~~e~f 153 (224)
.....|.|.+.++-...........++|++|...+..+++|||..++-..+.+. ..++|.+.+++++|.|.+
T Consensus 118 ----~~~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-- 191 (529)
T KOG1327|consen 118 ----KNAGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-- 191 (529)
T ss_pred ----ccCCcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc--
Confidence 246788998888876666677777778999999999999999999886543333 678999999999999998
Q ss_pred EEEeecCccc----ccEEEEEEEECCCCCCCceeEEEEEecCCC
Q psy12137 154 AIETKITELS----KQTLVITVWDKDYGKSNDYLGCLELCCNSK 193 (224)
Q Consensus 154 ~f~~~~~~~~----~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~ 193 (224)
|.++...++ +..+.+.+|+++..+++++||.+...+...
T Consensus 192 -~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~ 234 (529)
T KOG1327|consen 192 -FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSEL 234 (529)
T ss_pred -cccchhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHh
Confidence 333334444 367899999999988889999999887654
No 143
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.27 E-value=9e-12 Score=87.95 Aligned_cols=63 Identities=30% Similarity=0.475 Sum_probs=56.2
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeeccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 64 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~ 64 (224)
+++||+|||+|.| .++..++....|.|.|||++..++ ++||++.++|+++........|.+|+
T Consensus 59 ~~~~P~wne~f~f-~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 59 KTQNPNFDETFVF-QVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred CCCCCccceEEEE-EcCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 5899999999999 688887777899999999998888 99999999999998888777887775
No 144
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.26 E-value=2.3e-11 Score=85.95 Aligned_cols=77 Identities=25% Similarity=0.310 Sum_probs=59.3
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccc-eeecccccccCCCcccccCc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRD-LCLNLCKHYPVPREEEVWGE 78 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~-~~~~l~~~~~l~~~~~~~~~ 78 (224)
+++||.|||.|.| .+.. ..+.|.|+|||++..++ ++||++.++|+++....... .+..+ .
T Consensus 46 ~~~~P~Wne~~~~-~v~~---~~~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~------~-------- 107 (124)
T cd04044 46 DTSNPVWNETKYI-LVNS---LTEPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNL------L-------- 107 (124)
T ss_pred CCCCCcceEEEEE-EeCC---CCCEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhh------h--------
Confidence 5789999999999 5652 37899999999998888 99999999999997665432 11111 1
Q ss_pred ccceeceEEEEEEEEeC
Q psy12137 79 EECWQHGKIFLTLCFST 95 (224)
Q Consensus 79 ~~~~~~g~l~i~~~~~~ 95 (224)
......|+|++++.|.+
T Consensus 108 ~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 108 RNGKPVGELNYDLRFFP 124 (124)
T ss_pred cCCccceEEEEEEEeCC
Confidence 12356799999999864
No 145
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.26 E-value=2e-11 Score=85.82 Aligned_cols=72 Identities=29% Similarity=0.400 Sum_probs=56.7
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE 79 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 79 (224)
+|+||+|||+|.| .+.. ...+.|.|.|||++.. + ++||++.++++++........|++|.+
T Consensus 48 ~t~~P~W~e~f~~-~v~~--~~~~~l~i~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~-------------- 109 (121)
T cd08391 48 ENLNPKWNEVYEA-VVDE--VPGQELEIELFDEDPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLED-------------- 109 (121)
T ss_pred CCCCCcccceEEE-EeCC--CCCCEEEEEEEecCCC-CCCcEEEEEEEHHHhcccCccceEEECcC--------------
Confidence 5899999999999 4543 2468999999999988 7 999999999999976655555555532
Q ss_pred cceeceEEEEEEE
Q psy12137 80 ECWQHGKIFLTLC 92 (224)
Q Consensus 80 ~~~~~g~l~i~~~ 92 (224)
...|+|++.++
T Consensus 110 --~~~G~~~~~~~ 120 (121)
T cd08391 110 --VKSGRLHLKLE 120 (121)
T ss_pred --CCCceEEEEEe
Confidence 36788888765
No 146
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.25 E-value=4.2e-11 Score=88.10 Aligned_cols=79 Identities=20% Similarity=0.270 Sum_probs=60.9
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCCCcccceeecccccccCCCcccccCccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEE 80 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ 80 (224)
+++||+|||+|.| .+... .+.|.|.|||.|.++.++||++.++++++......+.|+++.+.. -..
T Consensus 79 ~~~nP~WnE~F~~-~~~~~---~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~----------~~~ 144 (158)
T cd04015 79 NSENPVWNESFHI-YCAHY---ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSN----------GKP 144 (158)
T ss_pred CCCCCccceEEEE-EccCC---CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCC----------CCC
Confidence 4789999999999 45433 568999999999876699999999999998766666677665420 011
Q ss_pred ceeceEEEEEEEE
Q psy12137 81 CWQHGKIFLTLCF 93 (224)
Q Consensus 81 ~~~~g~l~i~~~~ 93 (224)
....|+|++++.|
T Consensus 145 ~~~~~~l~v~~~f 157 (158)
T cd04015 145 PKPGAKIRVSLQF 157 (158)
T ss_pred CCCCCEEEEEEEE
Confidence 2456899999987
No 147
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.25 E-value=2.8e-11 Score=85.97 Aligned_cols=80 Identities=21% Similarity=0.347 Sum_probs=57.7
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC---cccceeecccccccCCCccccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH---ISRDLCLNLCKHYPVPREEEVW 76 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~---~~~~~~~~l~~~~~l~~~~~~~ 76 (224)
+|+||.|||+|.|. +.. ...+.|.|.|||++..++ ++||++.++|+++... ..... |+.+.....
T Consensus 44 ~t~~P~Wne~f~~~-~~~--~~~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~------w~~L~~~~~-- 112 (128)
T cd04024 44 NTLNPKWNYWCEFP-IFS--AQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDK------WITLKSTRP-- 112 (128)
T ss_pred CCcCCccCCcEEEE-ecC--CCCCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccce------eEEccCccc--
Confidence 58999999999994 443 346899999999998888 9999999999998632 22333 444432211
Q ss_pred CcccceeceEEEEEEE
Q psy12137 77 GEEECWQHGKIFLTLC 92 (224)
Q Consensus 77 ~~~~~~~~g~l~i~~~ 92 (224)
.......|+|++.+.
T Consensus 113 -~~~~~~~G~i~l~~~ 127 (128)
T cd04024 113 -GKTSVVSGEIHLQFS 127 (128)
T ss_pred -CccccccceEEEEEE
Confidence 122457899988875
No 148
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.24 E-value=4.3e-11 Score=85.56 Aligned_cols=72 Identities=25% Similarity=0.400 Sum_probs=58.5
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCC--CcccceeecccccccCCCcccccC
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP--HISRDLCLNLCKHYPVPREEEVWG 77 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~--~~~~~~~~~l~~~~~l~~~~~~~~ 77 (224)
+|+||.|||+|.| .++ ..+.|.|.|||.+..++ ++||++.++|.++.. ......|++|
T Consensus 56 ~t~~P~Wne~f~~-~v~----~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L-------------- 116 (132)
T cd04014 56 KTNSPVWNEEFTT-EVH----NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDL-------------- 116 (132)
T ss_pred CCCCCCcceeEEE-EcC----CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEc--------------
Confidence 5899999999999 464 35789999999998888 999999999999976 3445566655
Q ss_pred cccceeceEEEEEEEEeC
Q psy12137 78 EEECWQHGKIFLTLCFST 95 (224)
Q Consensus 78 ~~~~~~~g~l~i~~~~~~ 95 (224)
...|+|++.+.|..
T Consensus 117 ----~~~G~l~l~~~~~~ 130 (132)
T cd04014 117 ----EPQGKLHVKIELKG 130 (132)
T ss_pred ----cCCcEEEEEEEEec
Confidence 24689999988764
No 149
>KOG1030|consensus
Probab=99.24 E-value=8.9e-12 Score=89.89 Aligned_cols=51 Identities=39% Similarity=0.735 Sum_probs=45.0
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI 55 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~ 55 (224)
+++||+|||.|.| .|+.. ...|.+.|||+|++++ |+||+|.|+|..+....
T Consensus 47 ~n~NPeWNe~ltf-~v~d~---~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 47 KNLNPEWNEELTF-TVKDP---NTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred CCCCCcccceEEE-EecCC---CceEEEEEEeCCCCCcccccceeeeccHHHHHHh
Confidence 6899999999999 46555 7899999999999999 99999999999986443
No 150
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.24 E-value=3.1e-11 Score=85.18 Aligned_cols=61 Identities=21% Similarity=0.326 Sum_probs=49.8
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCC------C-ccceeEEeeccccCCCcccceeecccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG------H-DFLGEARFPLNRLRPHISRDLCLNLCK 65 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~------~-~~lG~~~i~l~~~~~~~~~~~~~~l~~ 65 (224)
+++||+|||+|.| .+... ...|.|+|||++..+ + ++||++.++|+++........|++|..
T Consensus 44 ~~~nP~WnE~f~f-~v~~~---~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~ 111 (126)
T cd08379 44 DSSNPRWNEQYTW-PVYDP---CTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLS 111 (126)
T ss_pred CCCCCcceeEEEE-EecCC---CCEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence 5799999999999 45432 458999999999873 5 999999999999987777667777654
No 151
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.23 E-value=2.1e-11 Score=86.04 Aligned_cols=60 Identities=30% Similarity=0.592 Sum_probs=51.1
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceee
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCL 61 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~ 61 (224)
+++||+|||+|.| .++..++....|.|.|||++.+++ ++||++.++|+++........|.
T Consensus 61 ~t~~P~wne~f~f-~i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~ 121 (123)
T cd08521 61 NTTNPVFNETLKY-HISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWY 121 (123)
T ss_pred CCCCCcccceEEE-eCCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEE
Confidence 5799999999999 688888878899999999999988 99999999999996554444443
No 152
>PLN02952 phosphoinositide phospholipase C
Probab=99.22 E-value=1.4e-10 Score=100.43 Aligned_cols=111 Identities=23% Similarity=0.216 Sum_probs=85.2
Q ss_pred CEEEEEEEEeecCCCCC------CCCCCCcEEEEEEecCCC-CCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEE
Q psy12137 98 RALIVNLIKCTNLIPMD------SNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVIT 170 (224)
Q Consensus 98 ~~l~v~i~~a~~L~~~~------~~g~~dpyv~~~~~~~~~-~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~ 170 (224)
..|.|.|+.|.+++... .....||||++.+.+-.. ..+++|+++.++.||.|||+|.|.+...++ +.|.|.
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PEL--Allrf~ 547 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPEL--ALLRIE 547 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCc--cEEEEE
Confidence 47899999998875321 112358999999864222 267799999999999999999999865444 489999
Q ss_pred EEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCcee
Q psy12137 171 VWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKH 211 (224)
Q Consensus 171 v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~ 211 (224)
|||+|..+.++++|+..++++....+++ |..|.+..+..+
T Consensus 548 V~D~D~~~~ddfiGq~~lPv~~Lr~GyR-~VpL~~~~G~~l 587 (599)
T PLN02952 548 VREYDMSEKDDFGGQTCLPVSELRPGIR-SVPLHDKKGEKL 587 (599)
T ss_pred EEecCCCCCCCeEEEEEcchhHhcCCce-eEeCcCCCCCCC
Confidence 9999988889999999999998777774 666665554443
No 153
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.21 E-value=3.3e-11 Score=85.28 Aligned_cols=51 Identities=33% Similarity=0.604 Sum_probs=44.9
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeecccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL 51 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~ 51 (224)
+|+||+|||+|.|..++..++....|.|.|||++..++ ++||++.++|++.
T Consensus 62 ~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~ 113 (125)
T cd04031 62 KTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADA 113 (125)
T ss_pred CCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEecccc
Confidence 58999999999995456566777899999999999888 9999999999984
No 154
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.20 E-value=8.4e-11 Score=83.33 Aligned_cols=74 Identities=24% Similarity=0.424 Sum_probs=56.1
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC---cccceeecccccccCCCccccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH---ISRDLCLNLCKHYPVPREEEVW 76 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~---~~~~~~~~l~~~~~l~~~~~~~ 76 (224)
+|+||.|||+|.| .+... ....|.|.|||.+..++ ++||++.++|+.+... .....|+++
T Consensus 45 ~t~~P~Wne~f~f-~i~~~--~~~~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l------------- 108 (126)
T cd04043 45 DTLNPRWDEEFEL-EVPAG--EPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDL------------- 108 (126)
T ss_pred CCCCCcccceEEE-EcCCC--CCCEEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEc-------------
Confidence 5899999999999 45543 36789999999998888 9999999999886432 234445554
Q ss_pred CcccceeceEEEEEEEEeC
Q psy12137 77 GEEECWQHGKIFLTLCFST 95 (224)
Q Consensus 77 ~~~~~~~~g~l~i~~~~~~ 95 (224)
...|+|++.+.+..
T Consensus 109 -----~~~g~i~l~~~~~~ 122 (126)
T cd04043 109 -----DTQGRLLLRVSMEG 122 (126)
T ss_pred -----CCCCeEEEEEEEee
Confidence 23588888887754
No 155
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.20 E-value=1.6e-10 Score=100.05 Aligned_cols=108 Identities=20% Similarity=0.274 Sum_probs=83.4
Q ss_pred CEEEEEEEEeecCCCC------CCCCCCCcEEEEEEecCCC-CCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEE
Q psy12137 98 RALIVNLIKCTNLIPM------DSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVIT 170 (224)
Q Consensus 98 ~~l~v~i~~a~~L~~~------~~~g~~dpyv~~~~~~~~~-~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~ 170 (224)
..|.|+|+.+.+++.. +.....||||++.+.+-.. ..+++|++..++.||.|||+|.|.+...++ +.|.|.
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPEL--AllRf~ 546 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPEL--ALLRVE 546 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCce--eEEEEE
Confidence 4789999999986422 1123469999999975322 256788888889999999999999865554 489999
Q ss_pred EEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCC
Q psy12137 171 VWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPD 208 (224)
Q Consensus 171 v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~ 208 (224)
|+|+|..++++++|+..|++.....+++|- .|.+..+
T Consensus 547 V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR~V-~L~~~~G 583 (598)
T PLN02230 547 VHEHDINEKDDFGGQTCLPVSEIRQGIHAV-PLFNRKG 583 (598)
T ss_pred EEECCCCCCCCEEEEEEcchHHhhCccceE-eccCCCc
Confidence 999998888999999999999887777653 4444444
No 156
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.19 E-value=1.1e-10 Score=82.14 Aligned_cols=77 Identities=25% Similarity=0.423 Sum_probs=56.7
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCc-ccceeecccccccCCCcccccCc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI-SRDLCLNLCKHYPVPREEEVWGE 78 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~-~~~~~~~l~~~~~l~~~~~~~~~ 78 (224)
+|+||+|||.|.| .++.. .+.|.|.|||.+..++ ++||++.++++.+.... ..+.|.+|++. .
T Consensus 42 ~t~nP~Wne~f~~-~~~~~---~~~l~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~-----------~ 106 (121)
T cd04054 42 KTLNPFWGEEYTV-HLPPG---FHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEV-----------D 106 (121)
T ss_pred CCCCCcccceEEE-eeCCC---CCEEEEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeee-----------C
Confidence 5899999999999 46543 4789999999999998 99999999998886432 24455555331 1
Q ss_pred ccceeceEEEEEEE
Q psy12137 79 EECWQHGKIFLTLC 92 (224)
Q Consensus 79 ~~~~~~g~l~i~~~ 92 (224)
......|+|++.+.
T Consensus 107 ~~~~~~G~i~l~~~ 120 (121)
T cd04054 107 PDEEVQGEIHLELS 120 (121)
T ss_pred CCCccccEEEEEEE
Confidence 11246789987764
No 157
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.19 E-value=5.4e-11 Score=84.44 Aligned_cols=62 Identities=24% Similarity=0.410 Sum_probs=52.1
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCC--CC-ccceeEEeeccccCCCcccceeecc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY--GH-DFLGEARFPLNRLRPHISRDLCLNL 63 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~--~~-~~lG~~~i~l~~~~~~~~~~~~~~l 63 (224)
+|+||+|||+|.| .++..++....|.|.|||.+.+ ++ ++||++.++|+++........|.+|
T Consensus 62 ~~~nP~wne~f~f-~i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 62 DNLNPVFDETFEF-PVSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred CCCCCEECeEEEE-ecCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 5899999999999 6888888788999999999976 56 9999999999999766555555544
No 158
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.18 E-value=4.8e-11 Score=88.15 Aligned_cols=64 Identities=28% Similarity=0.417 Sum_probs=53.8
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeeccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 64 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~ 64 (224)
+|+||.|||+|.|..++.+++....|.|.|||++.+++ ++||++.++++++......+.|..+.
T Consensus 73 ~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 73 KSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred CCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence 58999999999995466777777899999999999998 99999999999997666656555553
No 159
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.18 E-value=5.3e-11 Score=82.36 Aligned_cols=53 Identities=32% Similarity=0.564 Sum_probs=47.6
Q ss_pred CCCCCee-ccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC
Q psy12137 1 RTINPEF-HEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 54 (224)
Q Consensus 1 ~t~nP~w-~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~ 54 (224)
+++||.| ||+|.| .++..++..+.|.|+|||.+.+++ ++||++.+++.++...
T Consensus 41 ~~~nP~W~ne~f~f-~i~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~ 95 (110)
T cd08688 41 KSLNPVWNSEWFRF-EVDDEELQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLLLK 95 (110)
T ss_pred CCCCCcccCcEEEE-EcChHHcCCCeEEEEEEeCCCCCCCCceEEEEEeHHHhccc
Confidence 5799999 999999 687777767899999999999988 9999999999999763
No 160
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.16 E-value=3.6e-10 Score=97.67 Aligned_cols=108 Identities=17% Similarity=0.141 Sum_probs=82.2
Q ss_pred CEEEEEEEEeecCC--CC----CCCCCCCcEEEEEEecCCC-CCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEE
Q psy12137 98 RALIVNLIKCTNLI--PM----DSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVIT 170 (224)
Q Consensus 98 ~~l~v~i~~a~~L~--~~----~~~g~~dpyv~~~~~~~~~-~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~ 170 (224)
..|.|.|+.|.+++ .. +.....||||++.+.+-.. ..+++|+++.++.+|.|||+|.|.+...++ +.|.|.
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeL--AllRf~ 529 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPEL--ALLRLE 529 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCce--eEEEEE
Confidence 36889999998743 11 1223568999999864322 367789999998999999999999865544 589999
Q ss_pred EEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCC
Q psy12137 171 VWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPD 208 (224)
Q Consensus 171 v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~ 208 (224)
|+|+|..+.++++|+..|++.....+++|- .|.+..+
T Consensus 530 V~d~D~~~~ddfigq~~lPv~~Lr~GyR~V-~L~~~~g 566 (581)
T PLN02222 530 VHEYDMSEKDDFGGQTCLPVWELSQGIRAF-PLHSRKG 566 (581)
T ss_pred EEECCCCCCCcEEEEEEcchhhhhCccceE-EccCCCc
Confidence 999998888999999999999887777653 3444333
No 161
>KOG2059|consensus
Probab=99.15 E-value=1.1e-10 Score=100.22 Aligned_cols=100 Identities=26% Similarity=0.402 Sum_probs=83.3
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCC
Q psy12137 98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 177 (224)
Q Consensus 98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~ 177 (224)
..|.|+|.+|+||+..+..|.+||||.+.+. ....++|.++.+++.|.|.|.|.|.++.. =..|.|=|||.| +
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD---~E~v~RT~tv~ksL~PF~gEe~~~~iP~~---F~~l~fYv~D~d-~ 77 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD---QEEVCRTATVEKSLCPFFGEEFYFEIPRT---FRYLSFYVWDRD-L 77 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeec---chhhhhhhhhhhhcCCccccceEEecCcc---eeeEEEEEeccc-c
Confidence 4678999999999999999999999999994 23788999999999999999999999643 257899999999 8
Q ss_pred CCCceeEEEEEecCC--CCCccchhhhhh
Q psy12137 178 KSNDYLGCLELCCNS--KGDRLRHWVDMM 204 (224)
Q Consensus 178 ~~~~~lG~~~l~l~~--~~~~~~~w~~l~ 204 (224)
++|+.||.+.|.=.+ ...+.++|+.|.
T Consensus 78 ~~D~~IGKvai~re~l~~~~~~d~W~~L~ 106 (800)
T KOG2059|consen 78 KRDDIIGKVAIKREDLHMYPGKDTWFSLQ 106 (800)
T ss_pred ccccccceeeeeHHHHhhCCCCccceecc
Confidence 999999999998543 223556666654
No 162
>KOG1031|consensus
Probab=99.14 E-value=1.5e-10 Score=97.80 Aligned_cols=116 Identities=23% Similarity=0.310 Sum_probs=98.4
Q ss_pred CEEEEEEEEeecCCCCCCC-CCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeec-eEEEEEeecCcccccEEEEEEEECC
Q psy12137 98 RALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFN-EEFAIETKITELSKQTLVITVWDKD 175 (224)
Q Consensus 98 ~~l~v~i~~a~~L~~~~~~-g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~-e~f~f~~~~~~~~~~~l~i~v~~~~ 175 (224)
+.|-|.|..||+||.++.. ...|.||.+++ +...++|.+..+++||.|| +.|.|.+...+++.+.|.|.+.|+|
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~----~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~d 78 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKF----ANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHD 78 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEe----cccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccc
Confidence 6788999999999999874 46799999998 6789999999999999998 7899999988999999999999999
Q ss_pred CCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCC
Q psy12137 176 YGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 219 (224)
Q Consensus 176 ~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~ 219 (224)
..+.++-||.+.|+++..- ++.--.-....+..+.+|+|+..
T Consensus 79 tysandaigkv~i~idpl~--~e~aaqavhgkgtvisgw~pifd 120 (1169)
T KOG1031|consen 79 TYSANDAIGKVNIDIDPLC--LEEAAQAVHGKGTVISGWFPIFD 120 (1169)
T ss_pred ccccccccceeeeccChHH--HHhHHhhhcCCceEEeeeeecce
Confidence 9999999999999998522 12222344567788999999874
No 163
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.14 E-value=3.5e-10 Score=79.26 Aligned_cols=76 Identities=26% Similarity=0.486 Sum_probs=56.1
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE 79 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 79 (224)
+|+||.|||+|.| .+.. + .+.|.|+|||++..++ ++||++.+++.++.... ..|..+.. . ..
T Consensus 42 ~t~nP~W~e~f~~-~~~~--~-~~~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~------~-----~~ 104 (119)
T cd08377 42 KTLNPEWNKIFTF-PIKD--I-HDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGE--RKWYALKD------K-----KL 104 (119)
T ss_pred CCcCCccCcEEEE-EecC--c-CCEEEEEEEECCCCCCCceeeEEEEEHHHCCCCC--ceEEECcc------c-----CC
Confidence 5789999999999 4543 2 5789999999998888 99999999999986432 23334322 1 11
Q ss_pred cceeceEEEEEEEE
Q psy12137 80 ECWQHGKIFLTLCF 93 (224)
Q Consensus 80 ~~~~~g~l~i~~~~ 93 (224)
.....|+|.+++.+
T Consensus 105 ~~~~~G~i~l~~~~ 118 (119)
T cd08377 105 RTRAKGSILLEMDV 118 (119)
T ss_pred CCceeeEEEEEEEe
Confidence 23579999998865
No 164
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.14 E-value=5.8e-11 Score=85.11 Aligned_cols=49 Identities=29% Similarity=0.452 Sum_probs=46.2
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNR 50 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~ 50 (224)
+|+||+|||+|.| .|+.+++....|.|.|||+|.+++ ++||++.+.+..
T Consensus 63 ~t~nPvfNE~f~F-~v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 63 HKINPVWNEMIMF-ELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred CCCCCccccEEEE-ECCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 5899999999999 799999999999999999999999 999999999875
No 165
>KOG1326|consensus
Probab=99.13 E-value=6.1e-11 Score=105.11 Aligned_cols=123 Identities=24% Similarity=0.319 Sum_probs=83.2
Q ss_pred CCEEEEEEEEeecCCCCCCC----CCCCcEEEEEEecCCCCCeEeeeeeeCCC--CCeeceEEEEEe---ecCcccc---
Q psy12137 97 KRALIVNLIKCTNLIPMDSN----GFSDPFIKLYLKPDLHKRKYKTGVKWKTL--NPIFNEEFAIET---KITELSK--- 164 (224)
Q Consensus 97 ~~~l~v~i~~a~~L~~~~~~----g~~dpyv~~~~~~~~~~~~~~T~~~~~~~--~p~~~e~f~f~~---~~~~~~~--- 164 (224)
...++|.|-.-.++...+.. ..+|.||+-.+.+.. ..+++|.+++++. .-.||..|.|.. +++++.-
T Consensus 845 ~~~lrviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gde-e~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~k 923 (1105)
T KOG1326|consen 845 KYELRVIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGDE-EEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAK 923 (1105)
T ss_pred heeEEEEEeeccceeecCccceeeeccceEEecccccch-hhhcccceeeeeccCCcccceeeecccccchHhhHhhhhh
Confidence 45677777766666544432 257999999886432 3788898887754 345666665543 2222221
Q ss_pred ---------------cEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhc----------CCCceeEeeeecCC
Q psy12137 165 ---------------QTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMK----------YPDHKHEGIHNLSI 219 (224)
Q Consensus 165 ---------------~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~----------~~~~~~~~wh~l~~ 219 (224)
..|.|+|||.|.+++|++||-.+++|+....+..+-.++.- ...+.+.+|.|++.
T Consensus 924 ke~~ws~dete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~pa~sa~~c~~~~~~~~~vslFe~k~v~GWwP~~a 1003 (1105)
T KOG1326|consen 924 KEYSWSLDETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPAPAKSAKKCSLYMKKDKTVSLFEQKTVKGWWPCQA 1003 (1105)
T ss_pred hhhccccccccccCchheEEEecccCccChhhhhhheeechhhCcCCCCCHHHCCceeccCcceehhhcccccccceeee
Confidence 56999999999999999999999999976655555444321 34567889998874
Q ss_pred C
Q psy12137 220 K 220 (224)
Q Consensus 220 ~ 220 (224)
.
T Consensus 1004 ~ 1004 (1105)
T KOG1326|consen 1004 E 1004 (1105)
T ss_pred c
Confidence 3
No 166
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.13 E-value=9.1e-11 Score=80.80 Aligned_cols=53 Identities=28% Similarity=0.526 Sum_probs=44.4
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI 55 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~ 55 (224)
+|+||+|||+|.| .+...+. ...|.|.|||+|..++ ++||++.++|+++....
T Consensus 46 ~t~nPvWne~f~f-~v~~~~~-~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 46 HTLNPVFNERLAF-EVYPHEK-NFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred CCCCCcccceEEE-EEeCccC-CCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence 5899999999999 5544432 4689999999999998 99999999999996443
No 167
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.12 E-value=9.6e-11 Score=82.13 Aligned_cols=55 Identities=25% Similarity=0.403 Sum_probs=46.0
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCC-C-ccceeEEeeccccCCCccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-H-DFLGEARFPLNRLRPHISR 57 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~-~-~~lG~~~i~l~~~~~~~~~ 57 (224)
+|+||+|||+|.| .++.+++ ...|.|.|||++..+ + ++||++.|+|.++......
T Consensus 57 ~t~~P~~nE~F~f-~v~~~~~-~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~ 113 (119)
T cd08685 57 DSANPLFHETFSF-DVNERDY-QKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEI 113 (119)
T ss_pred CCCCCccccEEEE-EcChHHh-CCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccc
Confidence 5899999999999 6877776 357899999999876 5 8999999999999754433
No 168
>KOG0169|consensus
Probab=99.12 E-value=2.3e-10 Score=99.49 Aligned_cols=100 Identities=27% Similarity=0.378 Sum_probs=81.3
Q ss_pred EEEEEEEEeecCCCCCC----CCCCCcEEEEEEecCCCC-CeEeee-eeeCCCCCeeceEEEEEeecCcccccEEEEEEE
Q psy12137 99 ALIVNLIKCTNLIPMDS----NGFSDPFIKLYLKPDLHK-RKYKTG-VKWKTLNPIFNEEFAIETKITELSKQTLVITVW 172 (224)
Q Consensus 99 ~l~v~i~~a~~L~~~~~----~g~~dpyv~~~~~~~~~~-~~~~T~-~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~ 172 (224)
.|.|+|+.+.+.+.... ...+||||.+.+.+-... ...+|+ +..++-+|.|+|+|.|.+...++ +.|.|.|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL--AliRF~V~ 694 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL--ALIRFEVH 694 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce--eEEEEEEE
Confidence 69999999997654332 245799999998542222 678898 56678999999999999976666 48999999
Q ss_pred ECCCCCCCceeEEEEEecCCCCCccchh
Q psy12137 173 DKDYGKSNDYLGCLELCCNSKGDRLRHW 200 (224)
Q Consensus 173 ~~~~~~~~~~lG~~~l~l~~~~~~~~~w 200 (224)
|+|..++|+|+|+..+++..+..+++|-
T Consensus 695 d~d~~~~ddF~GQ~tlP~~~L~~GyRhV 722 (746)
T KOG0169|consen 695 DYDYIGKDDFIGQTTLPVSELRQGYRHV 722 (746)
T ss_pred ecCCCCcccccceeeccHHHhhCceeee
Confidence 9999999999999999999888888774
No 169
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.12 E-value=1.7e-10 Score=80.67 Aligned_cols=51 Identities=18% Similarity=0.309 Sum_probs=41.3
Q ss_pred CCCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCCCcc
Q psy12137 2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHIS 56 (224)
Q Consensus 2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~~ 56 (224)
+.||+|||+|.| .+. +. ...|.|+|||.|..++++||++.|+|.++.....
T Consensus 40 ~~nP~WnE~F~F-~~~--~~-~~~L~v~V~dkd~~~DD~lG~v~i~L~~v~~~~~ 90 (127)
T cd08394 40 GSQPCWEQDFMF-EIN--RL-DLGLVIELWNKGLIWDTLVGTVWIPLSTIRQSNE 90 (127)
T ss_pred CCCCceeeEEEE-EEc--CC-CCEEEEEEEeCCCcCCCceEEEEEEhHHcccCCC
Confidence 459999999999 453 33 4559999999996644999999999999976643
No 170
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.11 E-value=1.2e-10 Score=80.76 Aligned_cols=54 Identities=22% Similarity=0.371 Sum_probs=45.1
Q ss_pred CCCCCeeccEEEECccCcccc-ccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCc
Q psy12137 1 RTINPEFHEKLTFYSVSETDL-SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI 55 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~-~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~ 55 (224)
+|+||+|||+|.| .+...++ ....|.|+|||+|.+++ ++||++.++++++..+.
T Consensus 46 ~t~nP~Wne~f~f-~~~~~~~~~~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~ 101 (111)
T cd04041 46 KDLNPVWEETWFV-LVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIEDR 101 (111)
T ss_pred CCCCCccceeEEE-EeCchhccCCCEEEEEEEeCCCCCCCCcceEEEEEHHHHhcCC
Confidence 5899999999999 4544433 45789999999999998 99999999999997443
No 171
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.10 E-value=4.1e-10 Score=79.94 Aligned_cols=74 Identities=27% Similarity=0.451 Sum_probs=52.8
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCC-----------CC-ccceeEEeeccccCCCcccceeeccccccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY-----------GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYP 68 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~-----------~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~ 68 (224)
+|+||.|||+|.| .+... ...|.|.|||+|.. +. ++||++.+++.++. .....|..|.+.
T Consensus 42 ~t~~P~Wne~f~f-~~~~~---~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~-- 113 (127)
T cd04027 42 QNLNPVWNEKFHF-ECHNS---SDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKR-- 113 (127)
T ss_pred CCCCCccceEEEE-EecCC---CCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHHcc--CCCCeEEECccC--
Confidence 5899999999999 44322 46899999999853 35 89999999999874 233445555432
Q ss_pred CCCcccccCcccceeceEEEEEE
Q psy12137 69 VPREEEVWGEEECWQHGKIFLTL 91 (224)
Q Consensus 69 l~~~~~~~~~~~~~~~g~l~i~~ 91 (224)
......+|+|.+++
T Consensus 114 ---------~~~~~~~G~i~~~~ 127 (127)
T cd04027 114 ---------TDKSAVSGAIRLHI 127 (127)
T ss_pred ---------CCCCcEeEEEEEEC
Confidence 12235789998763
No 172
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.10 E-value=1.4e-10 Score=83.11 Aligned_cols=49 Identities=27% Similarity=0.328 Sum_probs=45.1
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNR 50 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~ 50 (224)
+|+||+|||+|.| .|+.+++....|+|.|||+|.+++ ++||++.+....
T Consensus 61 ~t~nP~~nE~f~F-~v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 61 DDTNPIFNEAMIF-SVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred CCCCCeeceeEEE-ECCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCCC
Confidence 5899999999999 799999999999999999999999 999999997653
No 173
>PLN02228 Phosphoinositide phospholipase C
Probab=99.10 E-value=9.7e-10 Score=94.78 Aligned_cols=109 Identities=21% Similarity=0.238 Sum_probs=84.4
Q ss_pred EEEEEEEEeecCCC---CC---CCCCCCcEEEEEEecCCC-CCeEeeeeeeCCCCCee-ceEEEEEeecCcccccEEEEE
Q psy12137 99 ALIVNLIKCTNLIP---MD---SNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIF-NEEFAIETKITELSKQTLVIT 170 (224)
Q Consensus 99 ~l~v~i~~a~~L~~---~~---~~g~~dpyv~~~~~~~~~-~~~~~T~~~~~~~~p~~-~e~f~f~~~~~~~~~~~l~i~ 170 (224)
.|.|+|+.|.+++. .. .....||||++.+.+-.. ..+++|++..++.+|.| ||+|.|.+...++ +.|.|.
T Consensus 432 ~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pEL--A~lRf~ 509 (567)
T PLN02228 432 TLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPEL--ALLWFK 509 (567)
T ss_pred eEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCce--eEEEEE
Confidence 68999999998732 11 123479999999865322 26778999888899999 9999999865554 489999
Q ss_pred EEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCce
Q psy12137 171 VWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK 210 (224)
Q Consensus 171 v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~ 210 (224)
|+|++..+.++++|+..|+++....+++|- .|.+..++.
T Consensus 510 V~D~d~~~~d~figq~~lPv~~Lr~GYR~V-pL~~~~G~~ 548 (567)
T PLN02228 510 VQDYDNDTQNDFAGQTCLPLPELKSGVRAV-RLHDRAGKA 548 (567)
T ss_pred EEeCCCCCCCCEEEEEEcchhHhhCCeeEE-EccCCCCCC
Confidence 999998888999999999999988888765 555555444
No 174
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.09 E-value=8.1e-10 Score=78.30 Aligned_cols=79 Identities=22% Similarity=0.278 Sum_probs=55.2
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCCCcccceeecccccccCCCcccccCccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEE 80 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ 80 (224)
+|+||+|||.|.| .+... ...|.|+|||++..+.++||++.+++..+.... ..++++.. .. ....
T Consensus 44 ~t~nP~Wne~f~f-~~~~~---~~~l~i~V~d~~~~~d~~lG~~~~~l~~~~~~~--~~~~~l~~------~~---~~~~ 108 (126)
T cd04046 44 DTLSPEFDTQAIF-YRKKP---RSPIKIQVWNSNLLCDEFLGQATLSADPNDSQT--LRTLPLRK------RG---RDAA 108 (126)
T ss_pred CCCCCcccceEEE-EecCC---CCEEEEEEEECCCCCCCceEEEEEecccCCCcC--ceEEEccc------CC---CCCC
Confidence 5789999999999 44332 678999999999765599999999998764322 22333321 10 1123
Q ss_pred ceeceEEEEEEEEe
Q psy12137 81 CWQHGKIFLTLCFS 94 (224)
Q Consensus 81 ~~~~g~l~i~~~~~ 94 (224)
....|+|.+++.+.
T Consensus 109 ~~~~G~i~~~~~~~ 122 (126)
T cd04046 109 GEVPGTISVKVTSS 122 (126)
T ss_pred CCCCCEEEEEEEEc
Confidence 47889998887654
No 175
>PLN03008 Phospholipase D delta
Probab=99.08 E-value=3.5e-10 Score=100.24 Aligned_cols=81 Identities=20% Similarity=0.347 Sum_probs=66.5
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCCCcccceeecccccccCCCcccccCccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEE 80 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~ 80 (224)
|++||+|||+|.| .+... ...|.|.|||.|.++.++||++.|||+++......+.|+++..... ..
T Consensus 98 n~~NPvWNE~F~f-~vah~---~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~----------kp 163 (868)
T PLN03008 98 NSQEPLWDEKFNI-SIAHP---FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASG----------KP 163 (868)
T ss_pred CCCCCCcceeEEE-EecCC---CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCC----------CC
Confidence 5789999999999 45542 5699999999999987999999999999988887888888765311 22
Q ss_pred ceeceEEEEEEEEeC
Q psy12137 81 CWQHGKIFLTLCFST 95 (224)
Q Consensus 81 ~~~~g~l~i~~~~~~ 95 (224)
....|+|++++.|.+
T Consensus 164 ~k~~~kl~v~lqf~p 178 (868)
T PLN03008 164 PKAETAIFIDMKFTP 178 (868)
T ss_pred CCCCcEEEEEEEEEE
Confidence 356789999999987
No 176
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.08 E-value=7.1e-10 Score=78.26 Aligned_cols=77 Identities=27% Similarity=0.438 Sum_probs=55.2
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC---ccceeEEeeccccCCCcc-cceeecccccccCCCccccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH---DFLGEARFPLNRLRPHIS-RDLCLNLCKHYPVPREEEVW 76 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~---~~lG~~~i~l~~~~~~~~-~~~~~~l~~~~~l~~~~~~~ 76 (224)
+|+||.|||+|.| .+.. .+.|.|+|||++.+++ ++||++.+++.++..... ...|+++.+...
T Consensus 42 ~t~nP~Wne~f~~-~~~~----~~~l~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~-------- 108 (123)
T cd08382 42 KTLDPKWNEHFDL-TVGP----SSIITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKK-------- 108 (123)
T ss_pred CCCCCcccceEEE-EeCC----CCEEEEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCC--------
Confidence 5899999999999 4543 5799999999998763 699999999999965543 244555533110
Q ss_pred CcccceeceEEEEEE
Q psy12137 77 GEEECWQHGKIFLTL 91 (224)
Q Consensus 77 ~~~~~~~~g~l~i~~ 91 (224)
.......|+|.+.+
T Consensus 109 -~~~~~~~G~v~~~~ 122 (123)
T cd08382 109 -SDNLSVRGKIVVSL 122 (123)
T ss_pred -CCCceEeeEEEEEe
Confidence 11235688887765
No 177
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.06 E-value=3.5e-10 Score=79.79 Aligned_cols=61 Identities=44% Similarity=0.932 Sum_probs=51.4
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeec
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLN 62 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~ 62 (224)
+++||.|||+|.|..++..++....|.|.|||++.+ + ++||++.++|+++.......++.+
T Consensus 61 ~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 61 KTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred CCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence 478999999999954666777778999999999988 7 999999999999987766665543
No 178
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.05 E-value=1.7e-10 Score=82.95 Aligned_cols=60 Identities=23% Similarity=0.380 Sum_probs=49.6
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 63 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l 63 (224)
+|+||+|||+|.| .++..++....|.|.|||+|.+++ ++||++.+++.. . ......|.++
T Consensus 61 ~t~nP~w~e~F~f-~v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~-~-~~~~~~w~~l 121 (136)
T cd08404 61 CTLNPVFNESFVF-DIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA-S-GSGGHHWKEV 121 (136)
T ss_pred CCCCCccCceEEE-ECCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC-C-CchHHHHHHH
Confidence 5899999999999 688877777889999999999998 999999999988 2 3344444444
No 179
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.05 E-value=2.8e-10 Score=79.96 Aligned_cols=60 Identities=32% Similarity=0.446 Sum_probs=49.0
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCC----CCC-ccceeEEeeccccCCCcccceeecc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK----YGH-DFLGEARFPLNRLRPHISRDLCLNL 63 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~----~~~-~~lG~~~i~l~~~~~~~~~~~~~~l 63 (224)
+|+||+|||+|.|. +..+ ..+.|.|+|||+|. .++ ++||++.+++.++........++.|
T Consensus 48 ~t~nP~wne~f~f~-~~~~--~~~~l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l 112 (120)
T cd04048 48 NNLNPDFVTTFTVD-YYFE--EVQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPL 112 (120)
T ss_pred CCCCCCceEEEEEE-EEeE--eeeEEEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence 58999999999994 4333 25689999999997 677 9999999999999877666666665
No 180
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.05 E-value=8e-10 Score=79.29 Aligned_cols=81 Identities=20% Similarity=0.397 Sum_probs=54.9
Q ss_pred CCCCCeeccEEEECccCc----cccc--cCeEEEEEEeCCCCCC-ccceeEEe-eccccCC---CcccceeecccccccC
Q psy12137 1 RTINPEFHEKLTFYSVSE----TDLS--LQSLHILVLDDDKYGH-DFLGEARF-PLNRLRP---HISRDLCLNLCKHYPV 69 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~----~~~~--~~~l~i~v~d~d~~~~-~~lG~~~i-~l~~~~~---~~~~~~~~~l~~~~~l 69 (224)
+|+||+|||+|.|..+.. +++. ...|.|+|||+|..++ ++||++.+ ++..+.. ...... |+++
T Consensus 42 ~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~------W~~L 115 (135)
T cd04017 42 ETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQ------WFPI 115 (135)
T ss_pred CCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCce------EEEe
Confidence 589999999999952222 1121 2579999999999988 99999987 4444432 233334 4444
Q ss_pred CCcccccCcccceeceEEEEEEEEeC
Q psy12137 70 PREEEVWGEEECWQHGKIFLTLCFST 95 (224)
Q Consensus 70 ~~~~~~~~~~~~~~~g~l~i~~~~~~ 95 (224)
... ....|+|.+++++..
T Consensus 116 ~~~--------~~~~Geil~~~~~~~ 133 (135)
T cd04017 116 YKG--------GQSAGELLAAFELIE 133 (135)
T ss_pred ecC--------CCchhheeEEeEEEE
Confidence 322 257899999998754
No 181
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.04 E-value=2e-10 Score=82.64 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=50.7
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 63 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l 63 (224)
+++||+|||+|.| .|+.+++....|.|.|||++..++ ++||++.+...........+.|.++
T Consensus 60 ~~~nP~fnE~F~f-~i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~ 122 (137)
T cd08409 60 GAASPSFNESFSF-KVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDM 122 (137)
T ss_pred CCCCCcccceEEE-ECCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHH
Confidence 5899999999999 799999988999999999999888 9999999986554434444444444
No 182
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.04 E-value=3.7e-10 Score=78.22 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=45.7
Q ss_pred CCCCCeeccEEEECc-cCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCc
Q psy12137 1 RTINPEFHEKLTFYS-VSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI 55 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~-v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~ 55 (224)
+|+||.|||+|.|.. .+..++....|.|.|||++.+++ ++||++.++|+++....
T Consensus 41 ~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~ 97 (111)
T cd04011 41 GTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQP 97 (111)
T ss_pred ccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccCCccEEEEECCccccCCC
Confidence 478999999999942 33445567899999999999988 99999999999996553
No 183
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.03 E-value=8.8e-10 Score=79.21 Aligned_cols=64 Identities=31% Similarity=0.430 Sum_probs=51.8
Q ss_pred CCCCCeeccEEEECccCc-------------cccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccc
Q psy12137 1 RTINPEFHEKLTFYSVSE-------------TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK 65 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~-------------~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~ 65 (224)
++.||.|||+|.|. +.. +++....|.|.|||.+..++ ++||++.++|.++........|++|.+
T Consensus 43 ~t~nP~Wne~f~f~-~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~ 120 (137)
T cd08675 43 KTNNPRFDEAFYFE-LTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQP 120 (137)
T ss_pred CCCCCCcceEEEEE-ccccccccccccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCC
Confidence 47899999999994 433 24567899999999998888 999999999999976666666666654
No 184
>PLN02270 phospholipase D alpha
Probab=99.03 E-value=1.6e-09 Score=95.97 Aligned_cols=106 Identities=19% Similarity=0.271 Sum_probs=82.6
Q ss_pred CCEEEEEEEEeecCCCCC------------------CCCCCCcEEEEEEecCCCC-CeEeeeeeeCC-CCCeeceEEEEE
Q psy12137 97 KRALIVNLIKCTNLIPMD------------------SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKT-LNPIFNEEFAIE 156 (224)
Q Consensus 97 ~~~l~v~i~~a~~L~~~~------------------~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~-~~p~~~e~f~f~ 156 (224)
.|.|.++|++|++|+..+ ..+.+||||.+.+ ++ ...+|+++.+. .||.|+|.|.+.
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~----~~a~v~rtr~~~~~~~~p~w~e~f~i~ 82 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDL----EKARVGRTRKIENEPKNPRWYESFHIY 82 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEe----CCcEEEEEeecCCCCCCCccccceEEe
Confidence 578899999999998521 1357799999999 55 77899999875 599999999998
Q ss_pred eecCcccccEEEEEEEECCCCCCCceeEEEEEecCC--CCCccchhhhhhcCCCce
Q psy12137 157 TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS--KGDRLRHWVDMMKYPDHK 210 (224)
Q Consensus 157 ~~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~--~~~~~~~w~~l~~~~~~~ 210 (224)
+... ...|.|+|.|.+.++. .+||.+.|++.. .|...+.|++++...++.
T Consensus 83 ~ah~---~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p 134 (808)
T PLN02270 83 CAHM---ASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDKNP 134 (808)
T ss_pred eccC---cceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCCCCc
Confidence 8543 3689999999998865 599999999875 345566666666554433
No 185
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.02 E-value=4.3e-10 Score=80.87 Aligned_cols=50 Identities=28% Similarity=0.380 Sum_probs=45.8
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeecccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL 51 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~ 51 (224)
+++||+|||+|.| .++.+++....|.|.|||++.+++ ++||++.+++...
T Consensus 62 ~t~nPvfnEtF~f-~i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 62 GQPDPEFKETFVF-QVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSS 112 (138)
T ss_pred CCCCCcEeeeEEE-ECCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCC
Confidence 4799999999999 699999999999999999999888 9999999988754
No 186
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.01 E-value=2.3e-09 Score=77.36 Aligned_cols=88 Identities=9% Similarity=0.115 Sum_probs=59.5
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCC-CC---C-ccceeEEeeccccCCCcccceeecccccccCCCcccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK-YG---H-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEV 75 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~-~~---~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~ 75 (224)
++.||.|+|.|.|. .... ...|.|.||+.+. .+ + .+||.+.||++++......+.|+++...... .+.
T Consensus 48 ~~~nP~W~E~F~f~-~~~~---~~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~---~~~ 120 (146)
T cd04013 48 KTDTLFWGEHFEFS-NLPP---VSVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGN---GKS 120 (146)
T ss_pred CCCCCcceeeEEec-CCCc---ccEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCC---Ccc
Confidence 47899999999994 2222 4679999987653 21 4 8999999999999876666666666542211 111
Q ss_pred cCcccceeceEEEEEEEEeC
Q psy12137 76 WGEEECWQHGKIFLTLCFST 95 (224)
Q Consensus 76 ~~~~~~~~~g~l~i~~~~~~ 95 (224)
.+.......++|++++.|.+
T Consensus 121 ~~~~~~~~~~~lrik~rf~~ 140 (146)
T cd04013 121 GGKEGKGESPSIRIKARYQS 140 (146)
T ss_pred ccccccCCCCEEEEEEEEEE
Confidence 11112345689999999974
No 187
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.01 E-value=3e-10 Score=81.59 Aligned_cols=50 Identities=30% Similarity=0.523 Sum_probs=45.1
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeecccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL 51 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~ 51 (224)
+|+||+|||+|.| .++.+++....|.|+|||++.+++ ++||++.+++.+.
T Consensus 61 ~t~~P~wne~F~f-~i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 61 RTLNPVFNESFIF-NIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred CCCCCcccceEEE-eCCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence 5799999999999 687777767899999999999988 9999999999876
No 188
>KOG1264|consensus
Probab=99.01 E-value=5.5e-09 Score=91.33 Aligned_cols=93 Identities=20% Similarity=0.268 Sum_probs=75.3
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCC--CCeEeeeeeeCCCCCeec-eEEEEEeecCcccccEEEEEEEE
Q psy12137 97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH--KRKYKTGVKWKTLNPIFN-EEFAIETKITELSKQTLVITVWD 173 (224)
Q Consensus 97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~--~~~~~T~~~~~~~~p~~~-e~f~f~~~~~~~~~~~l~i~v~~ 173 (224)
...|.|.|+.||+|+.. ..|.+.|||.+.+.+-.. ++.++|.+..+.+||+|| |+|+|.+... .=+.|.|.|++
T Consensus 1064 p~~lsv~vigaRHL~k~-gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nP--e~A~lRF~V~e 1140 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKL-GRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNP--EFAFLRFVVYE 1140 (1267)
T ss_pred ceEEEEEEeeccccccC-CCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCC--ceEEEEEEEec
Confidence 35789999999999854 345678999999864221 245566677788999999 9999999544 34689999999
Q ss_pred CCCCCCCceeEEEEEecCC
Q psy12137 174 KDYGKSNDYLGCLELCCNS 192 (224)
Q Consensus 174 ~~~~~~~~~lG~~~l~l~~ 192 (224)
.|+++...|||++..|+.+
T Consensus 1141 eDmfs~~~FiaqA~yPv~~ 1159 (1267)
T KOG1264|consen 1141 EDMFSDPNFLAQATYPVKA 1159 (1267)
T ss_pred ccccCCcceeeeeecchhh
Confidence 9999999999999999885
No 189
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.01 E-value=3.7e-10 Score=80.77 Aligned_cols=49 Identities=33% Similarity=0.644 Sum_probs=44.5
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNR 50 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~ 50 (224)
+|+||+|||+|.| .++..++....|.|.|||+|..++ ++||++.+++..
T Consensus 59 ~t~nP~wne~f~f-~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 59 KTLNPEFNEEFFY-DIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred ccCCCCcccEEEE-ECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC
Confidence 5899999999999 688877777899999999998888 999999999985
No 190
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.00 E-value=9.6e-10 Score=76.58 Aligned_cols=62 Identities=32% Similarity=0.480 Sum_probs=51.9
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK 65 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~ 65 (224)
+++||.|||+|.| .+... ..+.|.|+|||++..++ ++||++.+++.++........|+++..
T Consensus 41 ~~~~P~Wne~f~~-~~~~~--~~~~l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~ 103 (115)
T cd04040 41 KTLNPVWNESFEV-PVPSR--VRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDG 103 (115)
T ss_pred CCCCCcccccEEE-EeccC--CCCEEEEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcC
Confidence 5789999999999 45433 46789999999998888 999999999999987777777777754
No 191
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.00 E-value=1.1e-09 Score=77.49 Aligned_cols=54 Identities=31% Similarity=0.405 Sum_probs=45.1
Q ss_pred CCCCeeccEEEECccCcccc--ccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcc
Q psy12137 2 TINPEFHEKLTFYSVSETDL--SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHIS 56 (224)
Q Consensus 2 t~nP~w~e~f~f~~v~~~~~--~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~ 56 (224)
+.||.|||+|.| .++...+ ....|.|+|||.+.+++ ++||++.++|.++.....
T Consensus 44 ~~~P~Wne~f~f-~v~~~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~ 100 (125)
T cd04051 44 GTNPTWNETLRF-PLDERLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGAS 100 (125)
T ss_pred CCCCCCCCEEEE-EcChHhcccCccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccC
Confidence 689999999999 5655532 35789999999998888 999999999999976554
No 192
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.00 E-value=2e-09 Score=75.20 Aligned_cols=77 Identities=17% Similarity=0.259 Sum_probs=54.5
Q ss_pred CCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcccc
Q psy12137 3 INPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEEC 81 (224)
Q Consensus 3 ~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 81 (224)
+||+|||+|.| .++..++....|.|.+||.+..++ .++|.+.+. .+........|++|.+.. ...
T Consensus 40 ~~P~Wne~f~f-~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~l~--~~~~~~~~~~w~~L~~~~-----------~~~ 105 (117)
T cd08383 40 LNPFWGEEFVF-DDPPPDVTFFTLSFYNKDKRSKDRDIVIGKVALS--KLDLGQGKDEWFPLTPVD-----------PDS 105 (117)
T ss_pred CCCcccceEEE-ecCCccccEEEEEEEEEecccCCCeeEEEEEEec--CcCCCCcceeEEECccCC-----------CCC
Confidence 79999999999 677766666789999999887666 777876655 444444455555554321 113
Q ss_pred eeceEEEEEEEE
Q psy12137 82 WQHGKIFLTLCF 93 (224)
Q Consensus 82 ~~~g~l~i~~~~ 93 (224)
...|+|++.+.|
T Consensus 106 ~~~G~l~l~~~~ 117 (117)
T cd08383 106 EVQGSVRLRARY 117 (117)
T ss_pred CcCceEEEEEEC
Confidence 578999998875
No 193
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=98.98 E-value=8.8e-10 Score=78.87 Aligned_cols=51 Identities=37% Similarity=0.529 Sum_probs=43.7
Q ss_pred CCCCCeeccEEEECccCcc--ccccCeEEEEEEeCCCCCC-ccceeEEeeccccC
Q psy12137 1 RTINPEFHEKLTFYSVSET--DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR 52 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~--~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~ 52 (224)
+|+||+|||+|.| .+... ......|.|.|||++.+++ ++||++.++|+++.
T Consensus 64 ~t~nP~wnE~f~f-~i~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~ 117 (133)
T cd04009 64 KTLFPLFDESFEF-NVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIP 117 (133)
T ss_pred CCCCCccCCEEEE-EechhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCC
Confidence 5899999999999 46543 2346789999999999998 99999999999995
No 194
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=98.98 E-value=1.2e-09 Score=77.23 Aligned_cols=64 Identities=28% Similarity=0.412 Sum_probs=51.1
Q ss_pred CCCCCeeccEEEECccCcccc-ccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDL-SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK 65 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~-~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~ 65 (224)
+++||+|||+|.| .++.... ....|.|+|||.+.+++ ++||++.++++++......+.|..+.+
T Consensus 43 ~t~nP~Wne~f~f-~v~~~~~~~~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 43 DGRNPEWNEKFKF-TVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred CCCCCcccceEEE-EecCcccCCCCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 3789999999999 4554422 25789999999999888 999999999999987666665565544
No 195
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=98.97 E-value=8.9e-10 Score=79.15 Aligned_cols=50 Identities=32% Similarity=0.511 Sum_probs=44.7
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeecccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL 51 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~ 51 (224)
+|+||+|||+|.| .++..++....|.|+|||++.+++ ++||++.+++...
T Consensus 61 ~t~nP~wne~f~f-~i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 61 RTLNPYYNESFSF-EVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred CCCCCcccceEEE-ECCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCccC
Confidence 5889999999999 688777777799999999999998 9999999999753
No 196
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=98.97 E-value=3.5e-09 Score=75.87 Aligned_cols=78 Identities=24% Similarity=0.310 Sum_probs=54.4
Q ss_pred CCCCCee-ccEEEECccCccccccCeEEEEEEeCCCCC----CccceeEEeeccccCCCcccceeecccccccCCCcccc
Q psy12137 1 RTINPEF-HEKLTFYSVSETDLSLQSLHILVLDDDKYG----HDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEV 75 (224)
Q Consensus 1 ~t~nP~w-~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~----~~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~ 75 (224)
+|+||+| ||+|.| .+.. .+.|.|+|||++..+ +++||++.+++.++........ ...++++.+.
T Consensus 54 ~tlnP~W~nE~f~f-~v~~----~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~---~~~~~~l~k~--- 122 (137)
T cd08691 54 NTINPVWHREQFVF-VGLP----TDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGD---QELSYTLGRR--- 122 (137)
T ss_pred CCCCCceEceEEEE-EcCC----CCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCc---eEEEEECCcC---
Confidence 5899999 999999 4542 458999999987533 3899999999999965543321 2234444432
Q ss_pred cCcccceeceEEEEEE
Q psy12137 76 WGEEECWQHGKIFLTL 91 (224)
Q Consensus 76 ~~~~~~~~~g~l~i~~ 91 (224)
.......|+|.+.+
T Consensus 123 --~~~s~v~G~~~l~~ 136 (137)
T cd08691 123 --TPTDHVSGQLTFRF 136 (137)
T ss_pred --CCCCcEEEEEEEEe
Confidence 12356789887765
No 197
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.95 E-value=1.4e-09 Score=79.12 Aligned_cols=52 Identities=25% Similarity=0.441 Sum_probs=43.5
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 54 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~ 54 (224)
+++||+|||+|.|. +..... .+.|.|+|||+|..++ ++||++.++|.++...
T Consensus 55 ~t~nPvWNE~f~f~-v~~p~~-~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~ 107 (151)
T cd04018 55 NSYNPEWNEQIVFP-EMFPPL-CERIKIQIRDWDRVGNDDVIGTHFIDLSKISNS 107 (151)
T ss_pred CCCCCCcceEEEEE-eeCCCc-CCEEEEEEEECCCCCCCCEEEEEEEeHHHhccC
Confidence 58999999999994 433222 5789999999999988 9999999999998654
No 198
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=98.95 E-value=1.7e-09 Score=76.45 Aligned_cols=50 Identities=24% Similarity=0.232 Sum_probs=41.8
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccC
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR 52 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~ 52 (224)
+|+||+|||+|.|...... ..+.|.|+|||++.+++ ++||++.++|+...
T Consensus 68 ~t~nPvWNE~F~f~~~~~~--~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 68 NNNNPRWNATFDFGSVELS--PGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCCcCCCEEEEecccCC--CCCEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 5799999999999422222 46799999999999988 99999999999765
No 199
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=98.95 E-value=8.2e-10 Score=79.11 Aligned_cols=48 Identities=38% Similarity=0.634 Sum_probs=43.4
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeecc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLN 49 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~ 49 (224)
+++||+|||+|.| .++.+.+....|.|+|||++..++ ++||++.+++.
T Consensus 60 ~t~nP~wne~f~f-~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 60 NTLNPTYNEALVF-DVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN 108 (134)
T ss_pred CCCCCcccceEEE-ECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC
Confidence 5799999999999 687777777789999999999998 99999999977
No 200
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=98.94 E-value=4.5e-09 Score=76.07 Aligned_cols=51 Identities=33% Similarity=0.599 Sum_probs=44.1
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI 55 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~ 55 (224)
+|+||+|||+|.| .++.. ...|.|+|||++.+++ ++||++.+++.++....
T Consensus 42 ~t~nP~WnE~f~f-~i~~~---~~~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 42 KNLNPVWNEELTL-SVPNP---MAPLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCCCCeecccEEE-EecCC---CCEEEEEEEECCCCCCCCEEEEEEEEHHHhhhhh
Confidence 5799999999999 45443 7789999999999998 99999999999986443
No 201
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=98.94 E-value=4e-09 Score=74.63 Aligned_cols=50 Identities=26% Similarity=0.393 Sum_probs=42.9
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI 55 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~ 55 (224)
+|+||+|||+|.| .+. ..+.|.|+|||++..++ ++||++.++|+++....
T Consensus 43 ~t~~P~Wne~f~~-~~~----~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~ 93 (125)
T cd04021 43 KTSNPKWNEHFTV-LVT----PQSTLEFKVWSHHTLKADVLLGEASLDLSDILKNH 93 (125)
T ss_pred CCCCCccccEEEE-EeC----CCCEEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhc
Confidence 4789999999999 454 25689999999999888 99999999999996543
No 202
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=98.94 E-value=2e-09 Score=73.79 Aligned_cols=50 Identities=38% Similarity=0.470 Sum_probs=41.5
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCCCc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHI 55 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~ 55 (224)
+|.||+|||+|.|. +.. ...+.|.|.|||.+. .++||++.++|.++....
T Consensus 41 ~t~nP~Wne~f~f~-v~~--~~~~~l~v~v~d~~~--~~~iG~~~i~l~~l~~~~ 90 (105)
T cd04050 41 RTNNPVWEEGFTFL-VRN--PENQELEIEVKDDKT--GKSLGSLTLPLSELLKEP 90 (105)
T ss_pred CCCCCcccceEEEE-eCC--CCCCEEEEEEEECCC--CCccEEEEEEHHHhhccc
Confidence 57899999999994 543 235789999999985 689999999999997554
No 203
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=98.93 E-value=1.6e-09 Score=77.70 Aligned_cols=47 Identities=28% Similarity=0.446 Sum_probs=42.0
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeec
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPL 48 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l 48 (224)
+|+||+|||+|.| .++.+++....|.|.|||+|..++ ++||++.+..
T Consensus 60 ~t~nP~wnE~F~f-~i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~ 107 (135)
T cd08410 60 GTIDPFYNESFSF-KVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQ 107 (135)
T ss_pred CCCCCccceeEEE-eCCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcC
Confidence 5799999999999 688888877789999999999888 9999998664
No 204
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.92 E-value=2.7e-09 Score=75.35 Aligned_cols=50 Identities=28% Similarity=0.345 Sum_probs=42.3
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCC
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 53 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~ 53 (224)
+|+||+|||+|.|. +.. .....|.|+|||+|..++ ++||++.++|++...
T Consensus 43 ~t~nP~Wne~f~f~-~~~--~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 43 NTLNPVFGKMFELE-ATL--PGNSILKISVMDYDLLGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCCCccceEEEEE-ecC--CCCCEEEEEEEECCCCCCCceeEEEEEeeccccc
Confidence 57999999999994 432 236789999999999988 999999999998854
No 205
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.89 E-value=1.6e-08 Score=67.80 Aligned_cols=82 Identities=16% Similarity=0.241 Sum_probs=65.6
Q ss_pred EEEEEEEeecCCCCC---CCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECC
Q psy12137 100 LIVNLIKCTNLIPMD---SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 175 (224)
Q Consensus 100 l~v~i~~a~~L~~~~---~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~ 175 (224)
|.|+|..+|++...+ ..+.++|||.+++ +. .+.+|+. +.||.|||.|.|.+ +. ...+.|.|||+.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKv----ed~~kaRTr~---srnd~WnE~F~i~V--dk--~nEiel~VyDk~ 69 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKV----EDVERARTKP---SRNDRWNEDFEIPV--EK--NNEEEVIVYDKG 69 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEE----CCEEEEeccC---CCCCcccceEEEEe--cC--CcEEEEEEEeCC
Confidence 578999999998766 3578899999999 44 5888887 47999999999999 32 468999999986
Q ss_pred CCCCCceeEEEEEecCCC
Q psy12137 176 YGKSNDYLGCLELCCNSK 193 (224)
Q Consensus 176 ~~~~~~~lG~~~l~l~~~ 193 (224)
. ...--+|..++.++..
T Consensus 70 ~-~~~~Pi~llW~~~sdi 86 (109)
T cd08689 70 G-DQPVPVGLLWLRLSDI 86 (109)
T ss_pred C-CeecceeeehhhHHHH
Confidence 4 2345789999988753
No 206
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=98.88 E-value=2.1e-09 Score=76.86 Aligned_cols=61 Identities=26% Similarity=0.396 Sum_probs=49.7
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeeccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 64 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~ 64 (224)
++.||.|||+|.| .++..++....|.|.|||.+..++ ++||++.+++++ .......|.++.
T Consensus 60 ~~~~P~wne~f~f-~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~ 121 (134)
T cd00276 60 GTLNPVFNEAFSF-DVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEML 121 (134)
T ss_pred cCCCCeeeeeEEE-ECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHH
Confidence 4789999999999 688777767899999999998888 999999999998 334444444443
No 207
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=98.87 E-value=4.5e-09 Score=76.64 Aligned_cols=54 Identities=37% Similarity=0.614 Sum_probs=42.9
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCCCcccceee
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCL 61 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~~~~~~~ 61 (224)
+|+||.|||+|.|. + .++....|.|+|||++ .++||++.++++++.. ...+.|+
T Consensus 98 ~tlnP~WnE~F~f~-v--~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~ 151 (153)
T cd08676 98 QTLNPVWNETFRFE-V--EDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPS-CGLDSWF 151 (153)
T ss_pred CCCCCccccEEEEE-e--ccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCC-CCCCCeE
Confidence 57999999999994 4 3334679999999998 7899999999999973 3344443
No 208
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.86 E-value=6.1e-09 Score=73.12 Aligned_cols=50 Identities=28% Similarity=0.424 Sum_probs=43.2
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 54 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~ 54 (224)
+++||.|||+|.| .+... .+.|.|+|||++.+++ ++||++.++++++...
T Consensus 43 ~t~~P~Wne~f~~-~v~~~---~~~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~ 93 (120)
T cd04045 43 NTLNPVWDEVLYV-PVTSP---NQKITLEVMDYEKVGKDRSLGSVEINVSDLIKK 93 (120)
T ss_pred CCcCCccCceEEE-EecCC---CCEEEEEEEECCCCCCCCeeeEEEEeHHHhhCC
Confidence 4789999999999 45443 5789999999999988 8999999999999755
No 209
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=98.85 E-value=6.5e-09 Score=74.13 Aligned_cols=60 Identities=32% Similarity=0.473 Sum_probs=47.4
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 63 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l 63 (224)
+++||.|||+|.| .+...+ ..+.|.|.|||++..++ ++||++.++|+++... ....|++|
T Consensus 59 ~~~~P~wne~f~~-~~~~~~-~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L 119 (131)
T cd04026 59 KTLNPVWNETFTF-DLKPAD-KDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKL 119 (131)
T ss_pred CCCCCCccceEEE-eCCchh-cCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEEC
Confidence 5789999999999 455444 35789999999998888 9999999999999643 34444444
No 210
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=98.82 E-value=6.6e-09 Score=71.76 Aligned_cols=52 Identities=29% Similarity=0.403 Sum_probs=41.9
Q ss_pred CCCCCeeccEEEECccCccccc----cCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLS----LQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHIS 56 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~----~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~ 56 (224)
+|+||+|| +|.|. ..++. ...|.|+|||++..++ ++||++.++++++.....
T Consensus 47 ~t~nP~Wn-~f~~~---~~~l~~~~~~~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~~~~~ 103 (110)
T cd04047 47 NTLNPVWK-PFTIP---LQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFETTLDELLKSSP 103 (110)
T ss_pred cCCCCceE-EEEEE---HHHhcCCCcCCEEEEEEEEeCCCCCCcEEEEEEEEHHHHhcCCC
Confidence 58999999 67774 33222 5789999999999988 999999999999974443
No 211
>KOG1326|consensus
Probab=98.82 E-value=6.7e-09 Score=92.51 Aligned_cols=88 Identities=27% Similarity=0.474 Sum_probs=76.1
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCe--EeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137 99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRK--YKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 176 (224)
Q Consensus 99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~--~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~ 176 (224)
-++|++++|-+|.+.|.+|.+|||+++.+ +++. -+...+.+++||+|++.|.+.. .-+.+..+.++||++|.
T Consensus 614 LvrVyvv~A~~L~p~D~ng~adpYv~l~l----Gk~~~~d~~~yip~tlnPVfgkmfel~~--~lp~ek~l~v~vyd~D~ 687 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPSDGNGDADPYVKLLL----GKKRTLDRAHYIPNTLNPVFGKMFELEC--LLPFEKDLIVEVYDHDL 687 (1105)
T ss_pred eEEEEEEEeeeccccCCCCCcCceeeeee----ccchhhhhhhcCcCCCCcHHHHHHHhhc--ccchhhcceeEEEEeec
Confidence 46799999999999999999999999998 5543 5777888999999999988775 23445789999999999
Q ss_pred CCCCceeEEEEEecCC
Q psy12137 177 GKSNDYLGCLELCCNS 192 (224)
Q Consensus 177 ~~~~~~lG~~~l~l~~ 192 (224)
.++++.||+..+++.+
T Consensus 688 ~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 688 EAQDEKIGETTIDLEN 703 (1105)
T ss_pred ccccchhhceehhhhh
Confidence 9999999999999884
No 212
>KOG0696|consensus
Probab=98.81 E-value=2.7e-09 Score=87.62 Aligned_cols=51 Identities=33% Similarity=0.557 Sum_probs=45.5
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCC
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 53 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~ 53 (224)
.||||+|||+|.| .+.+.|- .+.|.|+|||+|+.+| +|+|..++.++++..
T Consensus 226 ~~LNP~wNEtftf-~Lkp~Dk-drRlsiEvWDWDrTsRNDFMGslSFgisEl~K 277 (683)
T KOG0696|consen 226 ATLNPVWNETFTF-KLKPSDK-DRRLSIEVWDWDRTSRNDFMGSLSFGISELQK 277 (683)
T ss_pred hhcCccccceeEE-ecccccc-cceeEEEEecccccccccccceecccHHHHhh
Confidence 3799999999999 6766665 7899999999999999 999999999999853
No 213
>KOG1328|consensus
Probab=98.81 E-value=1e-09 Score=94.83 Aligned_cols=111 Identities=32% Similarity=0.598 Sum_probs=88.8
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCC---------------------------eEeeeeeeCCCCCee
Q psy12137 97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR---------------------------KYKTGVKWKTLNPIF 149 (224)
Q Consensus 97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~---------------------------~~~T~~~~~~~~p~~ 149 (224)
..-+.|-+.+|+||...+.+|.+|||+...+.+...+. .+-|+++++++||.|
T Consensus 113 ~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW 192 (1103)
T KOG1328|consen 113 SVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKW 192 (1103)
T ss_pred cHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcch
Confidence 44566778899999999999999999998876533221 256788899999999
Q ss_pred ceEEEEEeecCcccccEEEEEEEECCCC---------------------------------CC---CceeEEEEEecCCC
Q psy12137 150 NEEFAIETKITELSKQTLVITVWDKDYG---------------------------------KS---NDYLGCLELCCNSK 193 (224)
Q Consensus 150 ~e~f~f~~~~~~~~~~~l~i~v~~~~~~---------------------------------~~---~~~lG~~~l~l~~~ 193 (224)
+|.|.|.+ +++....+.+.|||+|.- +. |+|+|.+.|++...
T Consensus 193 ~EkF~F~I--eDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei 270 (1103)
T KOG1328|consen 193 SEKFQFTI--EDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI 270 (1103)
T ss_pred hhheeeeh--hccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence 99999999 788888999999998732 33 78999999999985
Q ss_pred C-CccchhhhhhcCCCc
Q psy12137 194 G-DRLRHWVDMMKYPDH 209 (224)
Q Consensus 194 ~-~~~~~w~~l~~~~~~ 209 (224)
. .++++|++|-.....
T Consensus 271 P~~Gld~WFkLepRS~~ 287 (1103)
T KOG1328|consen 271 PPDGLDQWFKLEPRSDK 287 (1103)
T ss_pred CcchHHHHhccCccccc
Confidence 4 788888888654443
No 214
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=98.81 E-value=2.1e-08 Score=69.31 Aligned_cols=45 Identities=24% Similarity=0.524 Sum_probs=36.6
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeC-------CCCCC-ccceeEEeeccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDD-------DKYGH-DFLGEARFPLNR 50 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~-------d~~~~-~~lG~~~i~l~~ 50 (224)
+|+||+|||+|+| .++ ..+.|+|.|||. |..++ +.||.+.+.|..
T Consensus 40 ~TlnPvWnE~F~i-~l~----~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 40 DTTEPNWNEEFEI-ELE----GSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred CCCCCccceEEEE-EeC----CCCEEEEEEEEcccccccccccCcccEEEEEEEEECH
Confidence 5899999999999 464 367999999998 45677 899888887753
No 215
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=98.77 E-value=9.9e-09 Score=72.85 Aligned_cols=49 Identities=14% Similarity=0.246 Sum_probs=41.9
Q ss_pred CCC-CCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeecccc
Q psy12137 1 RTI-NPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL 51 (224)
Q Consensus 1 ~t~-nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~ 51 (224)
+|+ ||+|||+|.| .|+.++. ...|.|.|||++..++ ++||++.+.....
T Consensus 60 ~t~~~P~fNEsF~F-dv~~~~~-~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 60 SSNGQVKWGETMIF-PVTQQEH-GIQFLIKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred CCCCCceecceEEE-eCCchhh-eeEEEEEEEeCCCCcCCceEEEEEECCccC
Confidence 354 6999999999 7888754 6789999999999889 9999999998764
No 216
>KOG1013|consensus
Probab=98.68 E-value=1.2e-09 Score=86.53 Aligned_cols=114 Identities=28% Similarity=0.384 Sum_probs=99.5
Q ss_pred ccceeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEE-
Q psy12137 79 EECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIE- 156 (224)
Q Consensus 79 ~~~~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~- 156 (224)
......|.+.+.+.|......+.+++.+|.+|.+++.++..|||++..+.+..++ .+.+|++..++.||.|+|+.++.
T Consensus 74 ~~at~lg~~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~ 153 (362)
T KOG1013|consen 74 DPATTLGALEFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEG 153 (362)
T ss_pred chhhhccchhhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecc
Confidence 3346789999999999999999999999999999999999999999999887766 67899999999999999998887
Q ss_pred eecCcccccEEEEEEEECCCCCCCceeEEEEEecCC
Q psy12137 157 TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS 192 (224)
Q Consensus 157 ~~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~ 192 (224)
+..+......+.+.+.+.+.+..++++|+..+++.-
T Consensus 154 i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkK 189 (362)
T KOG1013|consen 154 ITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKK 189 (362)
T ss_pred cccchhhhhhhheeeccCcccccccCcccchhhhhc
Confidence 554555556788899999988889999999988764
No 217
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.64 E-value=7.8e-08 Score=68.21 Aligned_cols=53 Identities=26% Similarity=0.411 Sum_probs=45.7
Q ss_pred CCCC--CeeccEEEECccCc---------------------cccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC
Q psy12137 1 RTIN--PEFHEKLTFYSVSE---------------------TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 54 (224)
Q Consensus 1 ~t~n--P~w~e~f~f~~v~~---------------------~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~ 54 (224)
|++| |.||+.|.|. ++. +.+....|.|+|||.|.+++ ++||++.++|..+..+
T Consensus 48 rslnG~~~FNwRfvF~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 48 RSLDGEGNFNWRFVFP-FDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred ecCCCCcEEeEEEEEe-eecCCccceeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccc
Confidence 5788 9999999994 555 56677899999999999999 9999999999988544
No 218
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=98.63 E-value=1.6e-07 Score=66.52 Aligned_cols=73 Identities=30% Similarity=0.492 Sum_probs=50.6
Q ss_pred CCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeecccccccCCCcccccCcccc
Q psy12137 3 INPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEEC 81 (224)
Q Consensus 3 ~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~ 81 (224)
+||+|||+|.| .+... ....|.|.|||.+.. + ++||++.+++.++.... .+.++.+.. ...
T Consensus 54 ~~P~w~e~f~f-~~~~~--~~~~l~~~V~d~~~~-~~~~iG~~~~~l~~l~~g~---~~~~l~~~~-----------~~~ 115 (128)
T cd00275 54 FNPVWNETFEF-DVTVP--ELAFLRFVVYDEDSG-DDDFLGQACLPLDSLRQGY---RHVPLLDSK-----------GEP 115 (128)
T ss_pred cCCccCCcEEE-EEeCC--CeEEEEEEEEeCCCC-CCcEeEEEEEEhHHhcCce---EEEEecCCC-----------CCC
Confidence 49999999999 44433 245799999999988 7 99999999999984322 233443210 112
Q ss_pred eeceEEEEEEEE
Q psy12137 82 WQHGKIFLTLCF 93 (224)
Q Consensus 82 ~~~g~l~i~~~~ 93 (224)
...|.|.+.+..
T Consensus 116 ~~~~~l~v~~~~ 127 (128)
T cd00275 116 LELSTLFVHIDI 127 (128)
T ss_pred CcceeEEEEEEE
Confidence 456788777754
No 219
>KOG2060|consensus
Probab=98.63 E-value=2.3e-08 Score=80.60 Aligned_cols=124 Identities=22% Similarity=0.326 Sum_probs=94.6
Q ss_pred eeceEEEEEEEEeCCCCEEEEEEEEeecCCCCCC-CCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeec
Q psy12137 82 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKI 159 (224)
Q Consensus 82 ~~~g~l~i~~~~~~~~~~l~v~i~~a~~L~~~~~-~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~ 159 (224)
...|.|++.+ ....+.+.|.|++|++|..... ...++|||+|+++..+.. .+.+|+..+++..|.|-....|.-+
T Consensus 255 P~mg~iq~~~--~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s- 331 (405)
T KOG2060|consen 255 PNMGDIQIAL--MDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS- 331 (405)
T ss_pred cccccchhhh--hcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC-
Confidence 4566666655 3468999999999999976543 237899999999865433 7789999999999999888888764
Q ss_pred CcccccEEEEEEE-ECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCC
Q psy12137 160 TELSKQTLVITVW-DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP 221 (224)
Q Consensus 160 ~~~~~~~l~i~v~-~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~ 221 (224)
+....|.+.+| |+.++..+.|+|.+.+-+.+++. ....+.+||+|.+..
T Consensus 332 --p~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~l-----------s~~~~igwyKlfgss 381 (405)
T KOG2060|consen 332 --PPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNL-----------SSSPVIGWYKLFGSS 381 (405)
T ss_pred --CCccEEEEEEeccccccchHHHhhHHHHHhhhhcc-----------ccccceeeeeccCCc
Confidence 33578999998 57788888999999998876441 233678888888653
No 220
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.61 E-value=6.9e-08 Score=93.44 Aligned_cols=77 Identities=21% Similarity=0.312 Sum_probs=58.0
Q ss_pred CCCCCeeccEEEECccCccccc-cCeEEEEEEeCCCCCCccceeEEeeccccCCCcccceeecccccccCCCcccccCcc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLS-LQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEE 79 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~-~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~ 79 (224)
||.||+|||+|.|. + ++++ ...|.|+|||+|.++++.||++.|++.++.......-|+++.+
T Consensus 2020 ~~~nP~Wne~f~~~-~--~~p~~~~~l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~~-------------- 2082 (2102)
T PLN03200 2020 HSSSPEWKEGFTWA-F--DSPPKGQKLHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNP-------------- 2082 (2102)
T ss_pred CCCCCCcccceeee-e--cCCCCCCceEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecCc--------------
Confidence 68999999999984 3 3322 4679999999999977999999999999987776655555532
Q ss_pred cceeceE---EEEEEEEe
Q psy12137 80 ECWQHGK---IFLTLCFS 94 (224)
Q Consensus 80 ~~~~~g~---l~i~~~~~ 94 (224)
.....|+ |++-+.+.
T Consensus 2083 ~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200 2083 ESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred ccccCCCcceEEEEEEec
Confidence 1245666 77766654
No 221
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.59 E-value=1.7e-07 Score=64.86 Aligned_cols=107 Identities=14% Similarity=0.223 Sum_probs=75.0
Q ss_pred EEEEEEEeecCCCCC-----------C--CCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEee--------
Q psy12137 100 LIVNLIKCTNLIPMD-----------S--NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETK-------- 158 (224)
Q Consensus 100 l~v~i~~a~~L~~~~-----------~--~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~-------- 158 (224)
|.|.|++|.+|+... . .-.-++||++.+..-.++..++|+++.++-.|.|+..+.|.++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 467888888885221 0 1124789999975444458899999999999999999999864
Q ss_pred -----cCcccccEEEEEEEECCCC----------CCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeec
Q psy12137 159 -----ITELSKQTLVITVWDKDYG----------KSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 217 (224)
Q Consensus 159 -----~~~~~~~~l~i~v~~~~~~----------~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l 217 (224)
.+.+....+.++||+.... .+|-+||.+.|++.. |+ ..+..|++||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~----------Ll-~~rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRD----------LL-TKRSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHH----------Hh-hcccCccccccC
Confidence 1223347899999986532 234489999999864 22 234468888875
No 222
>KOG1011|consensus
Probab=98.46 E-value=2.9e-06 Score=73.27 Aligned_cols=128 Identities=17% Similarity=0.167 Sum_probs=96.7
Q ss_pred ccceeceEEEEEEEEeCC----CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC---CeEeeeeeeCCCCCeece
Q psy12137 79 EECWQHGKIFLTLCFSTK----KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK---RKYKTGVKWKTLNPIFNE 151 (224)
Q Consensus 79 ~~~~~~g~l~i~~~~~~~----~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~---~~~~T~~~~~~~~p~~~e 151 (224)
......|++.+.+..+.. ...++|.|+.|.+|.... .|.-.|||.+.+.++.-. .++.|+.+.++-.|.|||
T Consensus 1102 gvedpvgevsvqvdlfthpgtgehkvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNE 1180 (1283)
T KOG1011|consen 1102 GVEDPVGEVSVQVDLFTHPGTGEHKVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNE 1180 (1283)
T ss_pred CCCCCCceEEEEEEeecCCCCCcceEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCCcCcccCc
Confidence 334567999888887764 347999999999998753 467789999998764422 567888888889999999
Q ss_pred EEEEEeecCc-ccccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCC
Q psy12137 152 EFAIETKITE-LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 219 (224)
Q Consensus 152 ~f~f~~~~~~-~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~ 219 (224)
+|.|-+..+. +....|.|.|.|+...+.|+.+|-+.+.|.+.. ....-+.|.||..
T Consensus 1181 tF~f~Lg~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va------------~kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1181 TFHFFLGNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVA------------DKGSCACWVPLGR 1237 (1283)
T ss_pred eeEEEeccCCCCceEEEEEeehhheeecccceeeeeeeehhhHh------------hcCceeEeeeccc
Confidence 9999976543 333568888988887777889999999998632 1235666776653
No 223
>PLN02223 phosphoinositide phospholipase C
Probab=98.41 E-value=3e-07 Score=78.64 Aligned_cols=51 Identities=24% Similarity=0.395 Sum_probs=42.9
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 54 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~ 54 (224)
|+.||+|||+|.| .|...++ ..|+|+|+|+|..++ +|+|++.+|+..+...
T Consensus 460 Ng~nPvWne~F~F-~i~~PEL--AlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~G 511 (537)
T PLN02223 460 NEWKPTWGEEFTF-PLTYPDL--ALISFEVYDYEVSTADAFCGQTCLPVSELIEG 511 (537)
T ss_pred CCcCceecceeEE-EEEccCc--eEEEEEEEecCCCCCCcEEEEEecchHHhcCC
Confidence 5789999999999 4555543 479999999998887 9999999999999544
No 224
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=98.37 E-value=1.1e-06 Score=58.57 Aligned_cols=48 Identities=38% Similarity=0.727 Sum_probs=41.6
Q ss_pred CCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccC
Q psy12137 2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR 52 (224)
Q Consensus 2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~ 52 (224)
++||.|||.|.| .+... ....|.|.||+.+..+. .+||.+.+++.++.
T Consensus 42 ~~~P~w~~~~~~-~~~~~--~~~~l~i~v~~~~~~~~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 42 TLNPVWNETFEF-PVLDP--ESDTLTVEVWDKDRFSKDDFLGEVEIPLSELL 90 (102)
T ss_pred CCCCcccceEEE-EccCC--CCCEEEEEEEecCCCCCCceeEEEEEeHHHhh
Confidence 579999999999 45442 36789999999998887 99999999999986
No 225
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.36 E-value=1.1e-06 Score=58.80 Aligned_cols=50 Identities=38% Similarity=0.717 Sum_probs=41.6
Q ss_pred CCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC
Q psy12137 2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 54 (224)
Q Consensus 2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~ 54 (224)
+.||.|||+|.|. +.... ...|.|.|||.+..+. .++|.+.+++.++...
T Consensus 45 ~~~P~w~e~~~~~-~~~~~--~~~l~i~v~~~~~~~~~~~~G~~~~~l~~~~~~ 95 (101)
T smart00239 45 TLNPVWNETFEFE-VPPPE--LAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLG 95 (101)
T ss_pred CCCCcccceEEEE-ecCcc--cCEEEEEEEecCCccCCceeEEEEEEHHHcccC
Confidence 4699999999994 44432 7899999999998877 9999999999888544
No 226
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=98.28 E-value=1.2e-06 Score=56.87 Aligned_cols=42 Identities=36% Similarity=0.745 Sum_probs=34.8
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEE
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEAR 45 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~ 45 (224)
++.+|.|||+|.| .+...+. ..|.|+|||.+..++ .+||+|.
T Consensus 43 ~~~~P~w~e~~~~-~~~~~~~--~~l~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 43 NTSNPVWNEEFEF-PLDDPDL--DSLSFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp SBSSEEEEEEEEE-EESHGCG--TEEEEEEEEETSSSSEEEEEEEE
T ss_pred ccccceeeeeeee-eeecccc--cceEEEEEECCCCCCCCEEEEEC
Confidence 3679999999999 4555544 449999999999998 9999984
No 227
>PLN02952 phosphoinositide phospholipase C
Probab=98.26 E-value=3.4e-06 Score=73.65 Aligned_cols=52 Identities=31% Similarity=0.544 Sum_probs=43.4
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI 55 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~ 55 (224)
+|.||+|||+|.| .+...++ ..|+|.|+|+|..++ +++|++.+||..+...-
T Consensus 522 nN~nPvWnE~F~F-~i~~PEL--Allrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy 574 (599)
T PLN02952 522 DNWYPAWNEEFSF-PLTVPEL--ALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI 574 (599)
T ss_pred CCCCcccCCeeEE-EEEcCCc--cEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc
Confidence 3589999999999 4555544 479999999998888 99999999999996543
No 228
>KOG0169|consensus
Probab=98.23 E-value=3.4e-06 Score=74.04 Aligned_cols=51 Identities=31% Similarity=0.600 Sum_probs=44.8
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 54 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~ 54 (224)
|+-||.|+|+|+| .+...++. -|+|.|+|+|..++ +|+|+..+|+..+.+.
T Consensus 667 NgfnP~W~e~f~F-~l~vPELA--liRF~V~d~d~~~~ddF~GQ~tlP~~~L~~G 718 (746)
T KOG0169|consen 667 NGFNPIWDEEFEF-QLSVPELA--LIRFEVHDYDYIGKDDFIGQTTLPVSELRQG 718 (746)
T ss_pred CCcCcccCCeEEE-EEecccee--EEEEEEEecCCCCcccccceeeccHHHhhCc
Confidence 4679999999999 67777664 89999999999998 9999999999999644
No 229
>PLN02352 phospholipase D epsilon
Probab=98.22 E-value=5.4e-06 Score=73.84 Aligned_cols=98 Identities=13% Similarity=0.182 Sum_probs=64.5
Q ss_pred CCEEEEEEEEeecCCCC----CCC-CCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEE
Q psy12137 97 KRALIVNLIKCTNLIPM----DSN-GFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVIT 170 (224)
Q Consensus 97 ~~~l~v~i~~a~~L~~~----~~~-g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~ 170 (224)
.|.|.++|++|+.+... ... ...+|||.+.+ ++ ...+| .+..||.|+|.|...+... ....+.|+
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~----~~~~v~rt---~~~~~p~w~e~f~i~~ah~--~~~~~~f~ 79 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKI----GNKKVAKT---SHEYDRVWNQTFQILCAHP--LDSTITIT 79 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEe----CCcEEecC---CCCCCCccccceeEEeeee--cCCcEEEE
Confidence 46677777777633221 111 12399999998 45 56677 4566999999999888543 23579999
Q ss_pred EEECCCCCCCceeEEEEEecCCC--CCc-cchhhhhhcCCC
Q psy12137 171 VWDKDYGKSNDYLGCLELCCNSK--GDR-LRHWVDMMKYPD 208 (224)
Q Consensus 171 v~~~~~~~~~~~lG~~~l~l~~~--~~~-~~~w~~l~~~~~ 208 (224)
|.| .-.+||.+.|++... |.. .+.|+++++..+
T Consensus 80 vk~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~ 115 (758)
T PLN02352 80 LKT-----KCSILGRFHIQAHQIVTEASFINGFFPLIMENG 115 (758)
T ss_pred Eec-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCC
Confidence 987 257999999998752 222 444555544433
No 230
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.20 E-value=1.7e-06 Score=75.45 Aligned_cols=51 Identities=24% Similarity=0.438 Sum_probs=42.8
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 54 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~ 54 (224)
|+.||+|||+|.|. +...++ ..|+|+|+|+|...+ +|+|+..+|+..+...
T Consensus 521 n~~nP~Wneef~F~-l~vPEL--AllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~G 572 (598)
T PLN02230 521 DTWTPIWNKEFIFP-LAVPEL--ALLRVEVHEHDINEKDDFGGQTCLPVSEIRQG 572 (598)
T ss_pred CCCCCccCCeeEEE-EEcCce--eEEEEEEEECCCCCCCCEEEEEEcchHHhhCc
Confidence 56899999999994 555544 489999999998777 9999999999999543
No 231
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.09 E-value=9.2e-07 Score=57.01 Aligned_cols=48 Identities=21% Similarity=0.330 Sum_probs=43.1
Q ss_pred CCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccC
Q psy12137 2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR 52 (224)
Q Consensus 2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~ 52 (224)
..||+|+|+|.| .+....++...|.|.||. ...| ..||.|.+.|.++-
T Consensus 45 s~d~~f~ETFVF-qi~l~qL~~V~L~fsv~~--~~~RKe~iG~~sL~l~s~g 93 (103)
T cd08684 45 SNDIEFMETFVF-AIKLQNLQTVRLVFKIQT--QTPRKRTIGECSLSLRTLS 93 (103)
T ss_pred CCChhHHHHHHH-HHHHhhccceEEEEEeec--cCCccceeeEEEeecccCC
Confidence 468999999999 799999999999999999 4677 99999999999873
No 232
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.04 E-value=5.4e-06 Score=72.22 Aligned_cols=51 Identities=24% Similarity=0.344 Sum_probs=42.3
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 54 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~ 54 (224)
+|.||+|||+|.|. +...++ ..|+|.|+|+|..+. +|||++.+|+..+...
T Consensus 504 nn~nP~W~e~f~F~-i~~PeL--AllRf~V~d~D~~~~ddfigq~~lPv~~Lr~G 555 (581)
T PLN02222 504 DNWIPAWDEVFEFP-LTVPEL--ALLRLEVHEYDMSEKDDFGGQTCLPVWELSQG 555 (581)
T ss_pred CCCCcccCCeeEEE-EEcCce--eEEEEEEEECCCCCCCcEEEEEEcchhhhhCc
Confidence 35799999999994 555544 589999999998777 9999999999999543
No 233
>KOG1031|consensus
Probab=97.95 E-value=1.2e-05 Score=68.76 Aligned_cols=84 Identities=21% Similarity=0.412 Sum_probs=60.5
Q ss_pred CCCCCeeccE-EEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCc-c---cceeecccccccCCCccc
Q psy12137 1 RTINPEFHEK-LTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHI-S---RDLCLNLCKHYPVPREEE 74 (224)
Q Consensus 1 ~t~nP~w~e~-f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~-~---~~~~~~l~~~~~l~~~~~ 74 (224)
|+|||.||.. |.| .|+..+++.+.|.|.+.|+|+++. +.||++.|++..+-.+. . ...-..+..|++.-
T Consensus 45 kslnp~wnsdwfkf-evddadlqdeplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pif---- 119 (1169)
T KOG1031|consen 45 KSLNPQWNSDWFKF-EVDDADLQDEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIF---- 119 (1169)
T ss_pred hhcCCcccccceEE-ecChhhhccCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecc----
Confidence 6899999976 667 899999999999999999999999 99999999998873211 1 11112344455443
Q ss_pred ccCcccceeceEEEEEEE
Q psy12137 75 VWGEEECWQHGKIFLTLC 92 (224)
Q Consensus 75 ~~~~~~~~~~g~l~i~~~ 92 (224)
+.-+..+|+|.+-+.
T Consensus 120 ---dtihgirgeinvivk 134 (1169)
T KOG1031|consen 120 ---DTIHGIRGEINVIVK 134 (1169)
T ss_pred ---eecccccceeEEEEE
Confidence 112467788766554
No 234
>PLN02228 Phosphoinositide phospholipase C
Probab=97.93 E-value=3.9e-05 Score=66.77 Aligned_cols=50 Identities=26% Similarity=0.432 Sum_probs=41.8
Q ss_pred CCCCCee-ccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCC
Q psy12137 1 RTINPEF-HEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 53 (224)
Q Consensus 1 ~t~nP~w-~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~ 53 (224)
++.||+| ||+|.|. +...++ ..|+|.|+|+|..+. ++||++.+|+..+..
T Consensus 483 n~~nP~W~~e~f~F~-~~~pEL--A~lRf~V~D~d~~~~d~figq~~lPv~~Lr~ 534 (567)
T PLN02228 483 DQWFPIWGNDEFLFQ-LRVPEL--ALLWFKVQDYDNDTQNDFAGQTCLPLPELKS 534 (567)
T ss_pred CCCCceECCCeEEEE-EEcCce--eEEEEEEEeCCCCCCCCEEEEEEcchhHhhC
Confidence 3579999 9999994 555544 489999999998877 999999999999953
No 235
>KOG1264|consensus
Probab=97.76 E-value=2.3e-05 Score=69.35 Aligned_cols=49 Identities=27% Similarity=0.671 Sum_probs=42.7
Q ss_pred CCCCCeec-cEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccC
Q psy12137 1 RTINPEFH-EKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR 52 (224)
Q Consensus 1 ~t~nP~w~-e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~ 52 (224)
|.+||+|| |+|.| .|... ....|+|.|||-|-++. .|||++..|+..+.
T Consensus 1111 NGlnPiWn~e~ftF-eI~nP--e~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik 1161 (1267)
T KOG1264|consen 1111 NGLNPIWNPEKFTF-EIYNP--EFAFLRFVVYEEDMFSDPNFLAQATYPVKAIK 1161 (1267)
T ss_pred CCCCCCCCCcceEE-EeeCC--ceEEEEEEEecccccCCcceeeeeecchhhhh
Confidence 57999999 99999 45444 45689999999999999 99999999999885
No 236
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=97.67 E-value=0.00052 Score=51.18 Aligned_cols=94 Identities=13% Similarity=0.176 Sum_probs=67.2
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC--CeEeeeeeeCCCCCeeceEEEEEeecCccc-ccEEEEEEEE
Q psy12137 97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWD 173 (224)
Q Consensus 97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~--~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~-~~~l~i~v~~ 173 (224)
...+.|+|+.+.++.. .....+.||++.+..++.. ....|+.......+.|||.+.|++...++. ++.|.|+||+
T Consensus 7 ~~~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~ 84 (173)
T cd08693 7 EEKFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYE 84 (173)
T ss_pred CCCEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEE
Confidence 3467899999999875 2335678899887764322 344666655556799999999997666665 4679999998
Q ss_pred CCCCC----------------CCceeEEEEEecCC
Q psy12137 174 KDYGK----------------SNDYLGCLELCCNS 192 (224)
Q Consensus 174 ~~~~~----------------~~~~lG~~~l~l~~ 192 (224)
..... ....||.+.+.|-+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 85 VSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred ecccccccccccccccccccCcceEEEEEeEEEEc
Confidence 65321 23689999999875
No 237
>PLN02270 phospholipase D alpha
Probab=97.65 E-value=0.00015 Score=65.17 Aligned_cols=79 Identities=18% Similarity=0.285 Sum_probs=60.0
Q ss_pred CCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCCCcccceeecccccccCCCcccccCcccce
Q psy12137 3 INPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECW 82 (224)
Q Consensus 3 ~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ 82 (224)
.||.|||.|.. .+.-. ...|.|.|-|.|.++..+||.+.||++++......+-|+++.... -....
T Consensus 71 ~~p~w~e~f~i-~~ah~---~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~----------~~p~~ 136 (808)
T PLN02270 71 KNPRWYESFHI-YCAHM---ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDND----------KNPIH 136 (808)
T ss_pred CCCccccceEE-eeccC---cceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCC----------CCcCC
Confidence 59999999998 44444 578999999999888899999999999998776666666654321 01123
Q ss_pred eceEEEEEEEEeC
Q psy12137 83 QHGKIFLTLCFST 95 (224)
Q Consensus 83 ~~g~l~i~~~~~~ 95 (224)
...+|++++.|.+
T Consensus 137 ~~~~~~~~~~f~~ 149 (808)
T PLN02270 137 GGSKIHVKLQYFE 149 (808)
T ss_pred CCCEEEEEEEEEE
Confidence 3458999999887
No 238
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=97.63 E-value=0.00086 Score=49.17 Aligned_cols=92 Identities=13% Similarity=0.078 Sum_probs=65.2
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC--CeEeeeeeeCCCCCeeceEEEEEeecCccc-ccEEEEEEEE
Q psy12137 97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWD 173 (224)
Q Consensus 97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~--~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~-~~~l~i~v~~ 173 (224)
...+.|+|+.+.++... ...+.||++.+..++.. ....|+.+.. .++.|||.+.|++...++. ++.|.|+||+
T Consensus 7 ~~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~ 82 (158)
T cd08398 7 NSNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICS 82 (158)
T ss_pred CCCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEE
Confidence 34678999999988753 24689999988764322 2334544443 5799999999997666665 4679999998
Q ss_pred CCCCC----CCceeEEEEEecCC
Q psy12137 174 KDYGK----SNDYLGCLELCCNS 192 (224)
Q Consensus 174 ~~~~~----~~~~lG~~~l~l~~ 192 (224)
....+ ....+|.+.++|-+
T Consensus 83 ~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 83 VKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred EecccCCCCceEEEEEEEEEEEC
Confidence 65321 12469999999875
No 239
>PLN02964 phosphatidylserine decarboxylase
Probab=97.61 E-value=0.00019 Score=63.59 Aligned_cols=87 Identities=17% Similarity=0.214 Sum_probs=70.0
Q ss_pred eCCCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEE
Q psy12137 94 STKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD 173 (224)
Q Consensus 94 ~~~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~ 173 (224)
..-.|.+.++++.|+ ++ ..|+|..+-.. +.+.++|...+++.+|+||+...|.+.+..+. ...|.|||
T Consensus 50 ~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~---g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~ 117 (644)
T PLN02964 50 EDFSGIALLTLVGAE----MK---FKDKWLACVSF---GEQTFRTETSDSTDKPVWNSEKKLLLEKNGPH--LARISVFE 117 (644)
T ss_pred ccccCeEEEEeehhh----hc---cCCcEEEEEEe---cceeeeeccccccCCcccchhhceEeccCCcc--eEEEEEEe
Confidence 344778888888886 22 34887555433 67999999999999999999999998666554 56999999
Q ss_pred CCCCCCCceeEEEEEecCC
Q psy12137 174 KDYGKSNDYLGCLELCCNS 192 (224)
Q Consensus 174 ~~~~~~~~~lG~~~l~l~~ 192 (224)
.+.++.++++|.+.+++..
T Consensus 118 ~~~~s~n~lv~~~e~~~t~ 136 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFD 136 (644)
T ss_pred cCCCCHHHhhhheeecHhh
Confidence 9999999999999998764
No 240
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=97.45 E-value=0.00087 Score=49.26 Aligned_cols=76 Identities=22% Similarity=0.180 Sum_probs=57.1
Q ss_pred CCCCcEEEEEEecCCCC--CeEeeeeeeCCCCCeeceEEEEEeecCccc-ccEEEEEEEECCCCCCCceeEEEEEecCC
Q psy12137 117 GFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDKDYGKSNDYLGCLELCCNS 192 (224)
Q Consensus 117 g~~dpyv~~~~~~~~~~--~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~-~~~l~i~v~~~~~~~~~~~lG~~~l~l~~ 192 (224)
..++.||++.+..++.. ....|+.+.-+..+.|||...|++...++. ++.|.|+||+....++...+|.+.++|-+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 35688999988764421 234566665566789999999998776665 46799999998765566799999999875
No 241
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=97.42 E-value=0.0016 Score=47.74 Aligned_cols=94 Identities=13% Similarity=0.095 Sum_probs=63.8
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC--CeEeeeeeeCCCCCeeceEEEEEeecCccc-ccEEEEEEEEC
Q psy12137 98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDK 174 (224)
Q Consensus 98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~--~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~-~~~l~i~v~~~ 174 (224)
..+.|.+....++... .....+.||++.+..++.. ....|.......++.|||...|++...++. ++.|.|+||+.
T Consensus 8 ~~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~ 86 (156)
T cd08380 8 FNLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV 86 (156)
T ss_pred CCeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence 4566777777776541 1234678888887764421 233444444346799999999996555554 46799999997
Q ss_pred CCCC--CCceeEEEEEecCC
Q psy12137 175 DYGK--SNDYLGCLELCCNS 192 (224)
Q Consensus 175 ~~~~--~~~~lG~~~l~l~~ 192 (224)
+..+ .+..||.+.+++-+
T Consensus 87 ~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 87 SEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred ecCCCCcceEEEEEeEEeEc
Confidence 7543 45799999999875
No 242
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=97.32 E-value=0.0019 Score=53.16 Aligned_cols=100 Identities=15% Similarity=0.241 Sum_probs=75.0
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCc-----ccccEEEEEEEEC
Q psy12137 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITE-----LSKQTLVITVWDK 174 (224)
Q Consensus 100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~-----~~~~~l~i~v~~~ 174 (224)
+.|.|++|+|++... .-...+..++ .+....|.....+..|.||......+.... ++...|++++|..
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~----ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~ 74 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKF----NGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAV 74 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEe----CCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEe
Confidence 578899999998652 2356777777 568889999999999999988888754333 3346899999998
Q ss_pred C-CCCCCceeEEEEEecCCC---C----CccchhhhhhcC
Q psy12137 175 D-YGKSNDYLGCLELCCNSK---G----DRLRHWVDMMKY 206 (224)
Q Consensus 175 ~-~~~~~~~lG~~~l~l~~~---~----~~~~~w~~l~~~ 206 (224)
+ ..+..+.+|.+.++|.+. . ....+||+|++.
T Consensus 75 ~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~ 114 (340)
T PF12416_consen 75 DGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSS 114 (340)
T ss_pred cCCCCcceeccEEEEEccccccccccccccCCCeeEcccc
Confidence 8 556778999999999875 2 133446665554
No 243
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=97.22 E-value=0.0024 Score=47.59 Aligned_cols=96 Identities=16% Similarity=0.139 Sum_probs=66.5
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC--CeEeeeeee----CCCCCeeceEEEEEeecCccc-ccEEEE
Q psy12137 97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKW----KTLNPIFNEEFAIETKITELS-KQTLVI 169 (224)
Q Consensus 97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~--~~~~T~~~~----~~~~p~~~e~f~f~~~~~~~~-~~~l~i 169 (224)
...+.|+|..+.+++........+-||.+.+..++.. ....|+... ....+.|||.+.|++...++. ++.|.|
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 3457888999999987654445789999988764322 223443221 123577999999997655554 467999
Q ss_pred EEEECCCCC---------CCceeEEEEEecCC
Q psy12137 170 TVWDKDYGK---------SNDYLGCLELCCNS 192 (224)
Q Consensus 170 ~v~~~~~~~---------~~~~lG~~~l~l~~ 192 (224)
+||+....+ .+..||.+.++|-+
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEc
Confidence 999866543 35699999999875
No 244
>KOG1265|consensus
Probab=97.16 E-value=0.00094 Score=60.04 Aligned_cols=93 Identities=19% Similarity=0.356 Sum_probs=70.0
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC---CeEeeeeee-CCCCCeec-eEEEEE-eecCcccccEEEEE
Q psy12137 97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK---RKYKTGVKW-KTLNPIFN-EEFAIE-TKITELSKQTLVIT 170 (224)
Q Consensus 97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~---~~~~T~~~~-~~~~p~~~-e~f~f~-~~~~~~~~~~l~i~ 170 (224)
.+.+.|+|+.|.-|...+ ...||.|.+.+-... +.++|++.. ++.||+|+ |.|+|. +-..++ +.|.|.
T Consensus 702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeL--A~lRia 775 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPEL--ASLRIA 775 (1189)
T ss_pred EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccch--hheeee
Confidence 567899999999886654 358999998643222 567787765 46899998 588998 322344 589999
Q ss_pred EEECCCCCCCceeEEEEEecCCCCCccch
Q psy12137 171 VWDKDYGKSNDYLGCLELCCNSKGDRLRH 199 (224)
Q Consensus 171 v~~~~~~~~~~~lG~~~l~l~~~~~~~~~ 199 (224)
||+.+ ..+||+=.++++....+++|
T Consensus 776 vyeEg----gK~ig~RIlpvd~l~~GYrh 800 (1189)
T KOG1265|consen 776 VYEEG----GKFIGQRILPVDGLNAGYRH 800 (1189)
T ss_pred eeccC----CceeeeeccchhcccCccee
Confidence 99863 46999999999987777766
No 245
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=97.12 E-value=0.014 Score=43.97 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=48.1
Q ss_pred CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCC--CCceeEEEEEecCC
Q psy12137 134 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK--SNDYLGCLELCCNS 192 (224)
Q Consensus 134 ~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~--~~~~lG~~~l~l~~ 192 (224)
..++|.+...+.+|.|+|++.+.++.+...+..|.|++++...-. ....+|-+.++|-.
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 467888999999999999999999988888899999998754321 12579999999854
No 246
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=97.08 E-value=0.016 Score=43.76 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=47.4
Q ss_pred CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCC----CCCceeEEEEEecC
Q psy12137 134 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG----KSNDYLGCLELCCN 191 (224)
Q Consensus 134 ~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~----~~~~~lG~~~l~l~ 191 (224)
...+|.+...+.+|.|+|++.+.++.+...+..|.|++++.... ..+..+|-+.++|-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 57788888889999999999999998888889999999885421 11247899999985
No 247
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=97.07 E-value=0.0083 Score=44.82 Aligned_cols=94 Identities=16% Similarity=0.142 Sum_probs=61.0
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcccc-cEEEEEEEECC
Q psy12137 98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSK-QTLVITVWDKD 175 (224)
Q Consensus 98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~-~~l~i~v~~~~ 175 (224)
..++|+|..+..+ ..+.......||++.+..++.- ....|.....+.++.|||.+.|++...++.. +.|.|+||+..
T Consensus 10 ~~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 10 RKFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 4567777777633 3323333457888877653211 3335666666677999999999977666654 67999999853
Q ss_pred CCC----------------CCceeEEEEEecCC
Q psy12137 176 YGK----------------SNDYLGCLELCCNS 192 (224)
Q Consensus 176 ~~~----------------~~~~lG~~~l~l~~ 192 (224)
..+ .+..||.+.+.|-.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 89 APALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred cCcccccccccccccccccccceEEEEEEEEEc
Confidence 211 24578888888764
No 248
>PLN02352 phospholipase D epsilon
Probab=96.97 E-value=0.0021 Score=57.78 Aligned_cols=76 Identities=12% Similarity=0.138 Sum_probs=52.3
Q ss_pred CCCCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccCCCcc-cceeecccccccCCCcccccCccc
Q psy12137 2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHIS-RDLCLNLCKHYPVPREEEVWGEEE 80 (224)
Q Consensus 2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~~~~~-~~~~~~l~~~~~l~~~~~~~~~~~ 80 (224)
..||.|||.|... +.-. .+..|.|.|-| +..+||.+.||++++..... .+-|+++.... +-
T Consensus 55 ~~~p~w~e~f~i~-~ah~--~~~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~---------~~-- 116 (758)
T PLN02352 55 EYDRVWNQTFQIL-CAHP--LDSTITITLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMEN---------GK-- 116 (758)
T ss_pred CCCCccccceeEE-eeee--cCCcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCC---------CC--
Confidence 4599999999983 3322 23579999988 34999999999999976544 55555554311 01
Q ss_pred ceeceEEEEEEEEeC
Q psy12137 81 CWQHGKIFLTLCFST 95 (224)
Q Consensus 81 ~~~~g~l~i~~~~~~ 95 (224)
+....+|++++.|.+
T Consensus 117 p~~~~~~~~~~~~~~ 131 (758)
T PLN02352 117 PNPELKLRFMLWFRP 131 (758)
T ss_pred CCCCCEEEEEEEEEE
Confidence 111268999999987
No 249
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=96.94 E-value=0.034 Score=41.94 Aligned_cols=61 Identities=23% Similarity=0.344 Sum_probs=39.5
Q ss_pred CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCC-C--CceeEEEEEecCCCC
Q psy12137 134 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK-S--NDYLGCLELCCNSKG 194 (224)
Q Consensus 134 ~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~-~--~~~lG~~~l~l~~~~ 194 (224)
....|.+..++.+|.|+|+|.+.++.....+..|.|++++...-. + ...+|-+.++|-..|
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~~g 122 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMDNG 122 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-TS
T ss_pred eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeeeCC
Confidence 456777888889999999999999987777788999999865322 1 169999999987644
No 250
>KOG0905|consensus
Probab=96.93 E-value=0.00053 Score=63.35 Aligned_cols=62 Identities=26% Similarity=0.334 Sum_probs=54.2
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcccceeec
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLN 62 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~~~~~~ 62 (224)
||.||.|||...+.+++.+.+..+.|.+.||..+.... .++|.+.|+|..+....+..-|++
T Consensus 1570 kt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~ 1632 (1639)
T KOG0905|consen 1570 KTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYN 1632 (1639)
T ss_pred ccCCCchhhheeecCCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceee
Confidence 68999999999998899999999999999999998888 999999999999976665443333
No 251
>KOG3837|consensus
Probab=96.67 E-value=0.0013 Score=54.38 Aligned_cols=97 Identities=19% Similarity=0.240 Sum_probs=73.6
Q ss_pred CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCC-CCCeEeeeeeeCCCCCeeceEEEEEeecCc-c--------ccc
Q psy12137 96 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL-HKRKYKTGVKWKTLNPIFNEEFAIETKITE-L--------SKQ 165 (224)
Q Consensus 96 ~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~-~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~-~--------~~~ 165 (224)
....|.+.|+++.+++.....--.|.|+++...-.+ ..++.+|.+++.+.+|.|+|.|.+.+.... . ...
T Consensus 365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~ 444 (523)
T KOG3837|consen 365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL 444 (523)
T ss_pred chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence 356788889999888765433345789998864333 237889999999999999999999885411 1 125
Q ss_pred EEEEEEEECCC-CCCCceeEEEEEecCC
Q psy12137 166 TLVITVWDKDY-GKSNDYLGCLELCCNS 192 (224)
Q Consensus 166 ~l~i~v~~~~~-~~~~~~lG~~~l~l~~ 192 (224)
.++|++|++.. +++|.++|.+.+.+.-
T Consensus 445 g~kfeifhkggf~rSdkl~gt~nikle~ 472 (523)
T KOG3837|consen 445 GKKFEIFHKGGFNRSDKLTGTGNIKLEI 472 (523)
T ss_pred CeeEEEeeccccccccceeceeeeeehh
Confidence 69999999885 5678899999998874
No 252
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=96.59 E-value=0.042 Score=39.56 Aligned_cols=73 Identities=18% Similarity=0.154 Sum_probs=50.5
Q ss_pred CcEEEEEEecCCCC-C--eEeeeeeeCC-CCCeeceEEEEEeecCccc-ccEEEEEEEECCCCCCC----ceeEEEEEec
Q psy12137 120 DPFIKLYLKPDLHK-R--KYKTGVKWKT-LNPIFNEEFAIETKITELS-KQTLVITVWDKDYGKSN----DYLGCLELCC 190 (224)
Q Consensus 120 dpyv~~~~~~~~~~-~--~~~T~~~~~~-~~p~~~e~f~f~~~~~~~~-~~~l~i~v~~~~~~~~~----~~lG~~~l~l 190 (224)
+.||.+.+..++.. . ...|+....+ ..+.|+|.+.|++...++. ++.|.|+||..+..... ..||.+.+++
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 35677777654322 2 2366666666 7999999999998666665 46799999987765444 6999999998
Q ss_pred CC
Q psy12137 191 NS 192 (224)
Q Consensus 191 ~~ 192 (224)
-+
T Consensus 83 Fd 84 (142)
T PF00792_consen 83 FD 84 (142)
T ss_dssp B-
T ss_pred EC
Confidence 75
No 253
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=96.55 E-value=0.04 Score=40.09 Aligned_cols=102 Identities=17% Similarity=0.211 Sum_probs=68.5
Q ss_pred CCCEEEEEEEEeecCCCCCC--CCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccc---------
Q psy12137 96 KKRALIVNLIKCTNLIPMDS--NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSK--------- 164 (224)
Q Consensus 96 ~~~~l~v~i~~a~~L~~~~~--~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~--------- 164 (224)
....|+++|+.++-+-..-. .+..+.-+.+.+.- ++++++|+.+..+.+|.|+|.|.|++.......
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f--~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHF--RGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEe--cCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhc
Confidence 34567888888875532211 14455566666543 449999999999999999999999986554221
Q ss_pred --cEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCc
Q psy12137 165 --QTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDH 209 (224)
Q Consensus 165 --~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~ 209 (224)
..|.+.|..-+..+...++|.-.++ |..++..+..
T Consensus 85 ~~~pihivli~~d~~~~~~Lv~s~~ld----------WR~vL~s~~~ 121 (156)
T PF15627_consen 85 ISDPIHIVLIRTDPSGETTLVGSHFLD----------WRKVLCSGNG 121 (156)
T ss_pred CCCceEEEEEEecCCCceEeeeeceeh----------HHHHhccCCC
Confidence 4577777776665555677766664 7777766654
No 254
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=96.51 E-value=0.029 Score=37.80 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=51.2
Q ss_pred EEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC--CeEeeeeeeCCCCCeeceEEEEEeecCccc-ccEEEEEEEECCC
Q psy12137 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDKDY 176 (224)
Q Consensus 100 l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~--~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~-~~~l~i~v~~~~~ 176 (224)
+.+.+..+.++.........+.||++.+..++.. ....|+.+.....+.|||...|++...++. ++.|.|++|+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 4566666666654433323588999988764322 234566555556689999999997666555 4679999998643
No 255
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=96.50 E-value=0.0044 Score=43.34 Aligned_cols=54 Identities=22% Similarity=0.353 Sum_probs=40.4
Q ss_pred CCCCCeeccEEEECccC-------------ccccccCeEEEEEEeCCCCCC-----------ccceeEEeeccccCCCc
Q psy12137 1 RTINPEFHEKLTFYSVS-------------ETDLSLQSLHILVLDDDKYGH-----------DFLGEARFPLNRLRPHI 55 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~-------------~~~~~~~~l~i~v~d~d~~~~-----------~~lG~~~i~l~~~~~~~ 55 (224)
++-.|+|+-.++|. .+ .+.|....|.|+||+....++ -.||.+.||+.++....
T Consensus 57 rSFcPeF~Hh~Efp-c~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~r 134 (143)
T cd08683 57 RSFCPEFNHHVEFP-CNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKR 134 (143)
T ss_pred hhcCCCccceEEEe-cccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcc
Confidence 46789999999994 33 133456789999999774332 37899999999997554
No 256
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=96.44 E-value=0.0036 Score=42.26 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=35.3
Q ss_pred CCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccC
Q psy12137 3 INPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR 52 (224)
Q Consensus 3 ~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~ 52 (224)
-||.|||+|.| .| + ....+.|.|||.. ..+ ..||-.=+.+.++.
T Consensus 43 rnd~WnE~F~i-~V--d--k~nEiel~VyDk~-~~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 43 RNDRWNEDFEI-PV--E--KNNEEEVIVYDKG-GDQPVPVGLLWLRLSDIA 87 (109)
T ss_pred CCCcccceEEE-Ee--c--CCcEEEEEEEeCC-CCeecceeeehhhHHHHH
Confidence 58999999999 45 3 3679999999986 334 78898888888874
No 257
>PLN02964 phosphatidylserine decarboxylase
Probab=96.16 E-value=0.003 Score=56.23 Aligned_cols=51 Identities=14% Similarity=0.273 Sum_probs=43.8
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 54 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~ 54 (224)
+|+||+|||...| .|...+++. .+|.|||.++++. +.+|.|.++|.++...
T Consensus 89 ~~~~p~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 89 STDKPVWNSEKKL-LLEKNGPHL--ARISVFETNRLSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred ccCCcccchhhce-EeccCCcce--EEEEEEecCCCCHHHhhhheeecHhhccHH
Confidence 5899999999999 677887764 5999999999999 9999999988777533
No 258
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.95 E-value=0.38 Score=34.40 Aligned_cols=89 Identities=18% Similarity=0.176 Sum_probs=54.5
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeee-eCCCCCeeceEEEEEeecC------cccccEEEE
Q psy12137 98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVK-WKTLNPIFNEEFAIETKIT------ELSKQTLVI 169 (224)
Q Consensus 98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~-~~~~~p~~~e~f~f~~~~~------~~~~~~l~i 169 (224)
..+.+.|.+..+++. .....||+... +... ....|... ..+....|+|.|.+.+... ......+.|
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr--~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKR--GDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEE--CCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 346788888888876 12344555443 1111 12334333 2345679999998884321 244567899
Q ss_pred EEEECCCCCCCceeEEEEEecCC
Q psy12137 170 TVWDKDYGKSNDYLGCLELCCNS 192 (224)
Q Consensus 170 ~v~~~~~~~~~~~lG~~~l~l~~ 192 (224)
.|+....-++...+|.+.|+|..
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLae 103 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAE 103 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHH
Confidence 99887432333699999999885
No 259
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=95.76 E-value=0.37 Score=36.09 Aligned_cols=58 Identities=22% Similarity=0.260 Sum_probs=43.2
Q ss_pred eEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCC-----CCCceeEEEEEecCC
Q psy12137 135 KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG-----KSNDYLGCLELCCNS 192 (224)
Q Consensus 135 ~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~-----~~~~~lG~~~l~l~~ 192 (224)
..-+.+...+.+|.|+|+|.+.++.....+..|.|++++...- .....+|-+.++|-.
T Consensus 53 s~~~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 53 SEYTSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eeEEEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 3334444444899999999999976655678899999986522 335689999999876
No 260
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.57 E-value=0.48 Score=39.24 Aligned_cols=49 Identities=18% Similarity=0.363 Sum_probs=38.9
Q ss_pred CCCCeeccEEEECccCcccc-----ccCeEEEEEEeCC-CCCC-ccceeEEeecccc
Q psy12137 2 TINPEFHEKLTFYSVSETDL-----SLQSLHILVLDDD-KYGH-DFLGEARFPLNRL 51 (224)
Q Consensus 2 t~nP~w~e~f~f~~v~~~~~-----~~~~l~i~v~d~d-~~~~-~~lG~~~i~l~~~ 51 (224)
+-.|.||..+.| .++...+ +...|.+++|..| ..++ ..||.+.++|..+
T Consensus 39 ~~~p~f~teL~W-E~Dr~~l~~~r~~~tPiKl~c~a~~~~~~~re~iGyv~LdLRsa 94 (340)
T PF12416_consen 39 TESPQFNTELAW-ECDRKALKQHRLQRTPIKLQCFAVDGSTGKRESIGYVVLDLRSA 94 (340)
T ss_pred CCCceeecceee-eccHHHHHHhhccCCceEEEEEEecCCCCcceeccEEEEEcccc
Confidence 357999999999 5554433 4477999999999 4455 9999999999998
No 261
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=94.90 E-value=0.14 Score=36.62 Aligned_cols=50 Identities=18% Similarity=0.362 Sum_probs=37.7
Q ss_pred CeeccEEEECc---cCc--cccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC
Q psy12137 5 PEFHEKLTFYS---VSE--TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 54 (224)
Q Consensus 5 P~w~e~f~f~~---v~~--~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~ 54 (224)
-.|||+|.+.. ... ..+....+.|.|+....-++ ..+|.+.|+|++....
T Consensus 52 v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~ 107 (143)
T PF10358_consen 52 VQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANE 107 (143)
T ss_pred EEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCc
Confidence 37999999841 211 23667789999999875556 6999999999999764
No 262
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=94.43 E-value=0.07 Score=39.21 Aligned_cols=47 Identities=23% Similarity=0.294 Sum_probs=38.1
Q ss_pred CCeeccEEEECccCcccccc-CeEEEEEEeCCCCCC-ccceeEEeecccc
Q psy12137 4 NPEFHEKLTFYSVSETDLSL-QSLHILVLDDDKYGH-DFLGEARFPLNRL 51 (224)
Q Consensus 4 nP~w~e~f~f~~v~~~~~~~-~~l~i~v~d~d~~~~-~~lG~~~i~l~~~ 51 (224)
.+.|||-..| .|...+++. ..|.|.|||++..++ ..||.+.++|=+-
T Consensus 59 ~~~WnEwl~f-pI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~ 107 (159)
T cd08397 59 RRNWNEWLTL-PIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK 107 (159)
T ss_pred CcccceeEEc-ccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence 4679999999 588888854 669999999986666 8999998886543
No 263
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=94.21 E-value=0.11 Score=39.04 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=35.3
Q ss_pred CCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC----ccceeEEeeccc
Q psy12137 2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH----DFLGEARFPLNR 50 (224)
Q Consensus 2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~----~~lG~~~i~l~~ 50 (224)
+-+|.|+|+|.+ .++........|.|.+|+.....+ ..+|.+-+||-+
T Consensus 69 ~k~P~f~deiKi-~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 69 NKNPQFNDEIKI-QLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -SS-EEEEEEEE-EE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred CCCCCccEEEEE-EcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 458999999999 799888888999999999875432 489999999987
No 264
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=93.69 E-value=0.15 Score=38.18 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=39.2
Q ss_pred CCCeeccEEEECccCccccccCeEEEEEEeCCCC-----CC-ccceeEEeeccc
Q psy12137 3 INPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY-----GH-DFLGEARFPLNR 50 (224)
Q Consensus 3 ~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~-----~~-~~lG~~~i~l~~ 50 (224)
-+|.|+|+|.+ .+|........|.|.+|+.... .. ..+|.+-+||-+
T Consensus 63 k~p~f~deiKi-~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 63 KNPVFNDEIKI-QLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred CCCCCceeEEE-ecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 47999999999 7888877889999999997732 33 789999999875
No 265
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=93.55 E-value=0.14 Score=38.61 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=37.5
Q ss_pred CCCCeeccEEEECccCccccccCeEEEEEEeCCCCC--C-ccceeEEeecc
Q psy12137 2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG--H-DFLGEARFPLN 49 (224)
Q Consensus 2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~--~-~~lG~~~i~l~ 49 (224)
+-+|.|+|++.+ .|+.+......|.|.+++..... . ..+|-+-+||-
T Consensus 63 ~~~P~W~EtiKi-~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 63 NNSPRWNETIKL-PIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred CCCCCCceeEEE-ecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 357999999999 89999999999999999865332 2 56777777763
No 266
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=93.51 E-value=0.16 Score=38.48 Aligned_cols=46 Identities=11% Similarity=0.132 Sum_probs=36.5
Q ss_pred CCCeeccEEEECccCccccccCeEEEEEEeCCCCC----C-ccceeEEeecc
Q psy12137 3 INPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG----H-DFLGEARFPLN 49 (224)
Q Consensus 3 ~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~----~-~~lG~~~i~l~ 49 (224)
-+|.|+|++.+ .|+.++....+|.|.+++..... . ..+|-+-+||-
T Consensus 64 ~~P~W~EtIKl-~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 64 DKPKWFETFKV-AIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred CCCCCceeEEE-ecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 47999999999 89999999999999999865321 1 35677777764
No 267
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=93.50 E-value=0.11 Score=37.92 Aligned_cols=48 Identities=25% Similarity=0.282 Sum_probs=37.7
Q ss_pred CCCeeccEEEECccCccccc-cCeEEEEEEeCCCCC--C-ccceeEEeecccc
Q psy12137 3 INPEFHEKLTFYSVSETDLS-LQSLHILVLDDDKYG--H-DFLGEARFPLNRL 51 (224)
Q Consensus 3 ~nP~w~e~f~f~~v~~~~~~-~~~l~i~v~d~d~~~--~-~~lG~~~i~l~~~ 51 (224)
.++.|||...| .+...+++ +..|.|.||+++..+ . ..||.+.++|=+.
T Consensus 56 ~~~~Wne~l~F-~i~~~~LP~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 56 TSVTWNEWLTF-DILISDLPREARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred CCCcccceeEc-cchhhcCChhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence 46889999999 56666664 466999999988665 4 7899999987654
No 268
>KOG3837|consensus
Probab=93.38 E-value=0.24 Score=41.56 Aligned_cols=80 Identities=14% Similarity=0.194 Sum_probs=57.2
Q ss_pred CCCCeeccEEEECccCc---------cccccCeEEEEEEeCCCCCC--ccceeEEeeccccCCCcccceeecccccccCC
Q psy12137 2 TINPEFHEKLTFYSVSE---------TDLSLQSLHILVLDDDKYGH--DFLGEARFPLNRLRPHISRDLCLNLCKHYPVP 70 (224)
Q Consensus 2 t~nP~w~e~f~f~~v~~---------~~~~~~~l~i~v~d~d~~~~--~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~ 70 (224)
|..|.|+|.|.+ .|-. ..+..--+.|+||+...+.+ .++|.+.+.|+-|.....+...+++.+-
T Consensus 414 t~SPdfde~fkl-ni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG---- 488 (523)
T KOG3837|consen 414 TPSPDFDEDFKL-NIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG---- 488 (523)
T ss_pred CCCCCcccceee-eccCCCcccHHHHHHHHhcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceecccc----
Confidence 678999999998 4433 11223458999999998887 6999999999988766555544555431
Q ss_pred CcccccCcccceeceEEEEEEEEeC
Q psy12137 71 REEEVWGEEECWQHGKIFLTLCFST 95 (224)
Q Consensus 71 ~~~~~~~~~~~~~~g~l~i~~~~~~ 95 (224)
+-...|+|.+++..-.
T Consensus 489 ---------RK~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 489 ---------RKAVGGKLEVKVRIRQ 504 (523)
T ss_pred ---------ccccCCeeEEEEEEec
Confidence 2367788888776543
No 269
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=93.36 E-value=0.51 Score=35.33 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=47.5
Q ss_pred CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCCCC------CCceeEEEEEecCCCC
Q psy12137 134 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK------SNDYLGCLELCCNSKG 194 (224)
Q Consensus 134 ~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~------~~~~lG~~~l~l~~~~ 194 (224)
....|.+...+.+|.|+|++.+.++.....+..|.|++++.+--. ....+|-+.++|-..|
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~~g 120 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLRNG 120 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeecCC
Confidence 567888888999999999999999877666778999999844211 1357999999987544
No 270
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=92.97 E-value=0.22 Score=35.81 Aligned_cols=48 Identities=27% Similarity=0.334 Sum_probs=36.9
Q ss_pred CCCeeccEEEECccCcccccc-CeEEEEEEeCCCCCC-----ccceeEEeecccc
Q psy12137 3 INPEFHEKLTFYSVSETDLSL-QSLHILVLDDDKYGH-----DFLGEARFPLNRL 51 (224)
Q Consensus 3 ~nP~w~e~f~f~~v~~~~~~~-~~l~i~v~d~d~~~~-----~~lG~~~i~l~~~ 51 (224)
.+|.|||...| .|...+++. ..|.|.||+.+.... ..||.+.++|=+.
T Consensus 32 ~~~~W~e~l~F-~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 32 SRPKWDEWLTF-PIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp SSEEEEEEEEE-EEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred ccceEeeEEEe-ecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 57999999999 588888855 559999999886554 3789988886544
No 271
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=92.92 E-value=0.65 Score=33.86 Aligned_cols=84 Identities=18% Similarity=0.324 Sum_probs=58.3
Q ss_pred CCCCeeccEEEECccCcccc-----------ccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCccc--ceeecccccc
Q psy12137 2 TINPEFHEKLTFYSVSETDL-----------SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISR--DLCLNLCKHY 67 (224)
Q Consensus 2 t~nP~w~e~f~f~~v~~~~~-----------~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~~--~~~~~l~~~~ 67 (224)
+++|.|+|.|-| .+..+.. ....|++.|...|..+. .++|+-.++...+..+... .+...+....
T Consensus 55 ~~eP~f~e~Flf-~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~ 133 (156)
T PF15627_consen 55 ACEPDFNEEFLF-ELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVG 133 (156)
T ss_pred ccCCCCCCcEEE-EecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccC
Confidence 578999999999 5665531 13679999999998888 9999999999988766654 3223332210
Q ss_pred cCCCcccccCcccceeceEEEEEEEEeCC
Q psy12137 68 PVPREEEVWGEEECWQHGKIFLTLCFSTK 96 (224)
Q Consensus 68 ~l~~~~~~~~~~~~~~~g~l~i~~~~~~~ 96 (224)
.......|-|.++++..+.
T Consensus 134 ----------~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 134 ----------PESKVPVGILDLRLELLPN 152 (156)
T ss_pred ----------CCCccceeEEEEEEEeecC
Confidence 1112467888888876653
No 272
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=92.85 E-value=0.97 Score=33.51 Aligned_cols=68 Identities=18% Similarity=0.290 Sum_probs=48.8
Q ss_pred CCcEEEEEEecCCCCCeEeeeeeeC--CCCCeeceEEEEEeecCcccccEEEEEEEECCCCCCCceeEEEEEecCCC
Q psy12137 119 SDPFIKLYLKPDLHKRKYKTGVKWK--TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK 193 (224)
Q Consensus 119 ~dpyv~~~~~~~~~~~~~~T~~~~~--~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~ 193 (224)
..-|+++.+. ++...+|+...- ...-.|+|.|.+.+. ... ..|.++||.... .++.+|+++.|++-..
T Consensus 37 ~~~~ikl~~N---~k~V~~T~~~~l~~dF~v~f~~~f~v~i~--~~P-esi~l~i~E~~~-~~~~~la~v~vpvP~~ 106 (168)
T PF15625_consen 37 TRYYIKLFFN---DKEVSRTRSRPLWSDFRVHFNEIFNVQIT--RWP-ESIKLEIYEKSG-LSDRLLAEVFVPVPGS 106 (168)
T ss_pred eeEEEEEEEC---CEEEEeeeeEecCCCeEEeccCEEEEEEe--cCC-CEEEEEEEEccC-ccceEEEEEEeeCCCC
Confidence 3567888773 345566666543 234578899999884 333 599999999887 5688999999998753
No 273
>KOG1452|consensus
Probab=92.75 E-value=0.51 Score=38.23 Aligned_cols=84 Identities=12% Similarity=0.038 Sum_probs=57.1
Q ss_pred EEEeCCCCEEEEEEEEeecCCCCCC--CCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEE
Q psy12137 91 LCFSTKKRALIVNLIKCTNLIPMDS--NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLV 168 (224)
Q Consensus 91 ~~~~~~~~~l~v~i~~a~~L~~~~~--~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~ 168 (224)
+......|.|.+.++.+|+|.-... +-+.+-|+.+... .....+|.+......-.|.|.|..++- ....+.
T Consensus 44 l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~d---rqh~aRt~vrs~~~~f~w~e~F~~Dvv----~~~vl~ 116 (442)
T KOG1452|consen 44 LRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPD---RQHPARTRVRSSGPGFAWAEDFKHDVV----NIEVLH 116 (442)
T ss_pred eeeecccceEEEEEecccccccChhccCceeeeeeeeeec---ccCccccccccCCCCccchhhceeecc----cceeee
Confidence 3444568999999999999965432 3456778888762 236667777766666678898887752 124677
Q ss_pred EEEEECCCCCCCc
Q psy12137 169 ITVWDKDYGKSND 181 (224)
Q Consensus 169 i~v~~~~~~~~~~ 181 (224)
+-||.++.-.++.
T Consensus 117 ~lvySW~pq~RHK 129 (442)
T KOG1452|consen 117 YLVYSWPPQRRHK 129 (442)
T ss_pred EEEeecCchhhcc
Confidence 8888877654443
No 274
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=92.51 E-value=0.83 Score=34.41 Aligned_cols=59 Identities=22% Similarity=0.195 Sum_probs=46.5
Q ss_pred CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC--CC-------CCceeEEEEEecCC
Q psy12137 134 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY--GK-------SNDYLGCLELCCNS 192 (224)
Q Consensus 134 ~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~--~~-------~~~~lG~~~l~l~~ 192 (224)
....|.+...+.+|.|.|++-+.++.....+..|.|++|+..- -. ....+|-+.++|-.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 5677888888999999999999998777777789999998651 11 13578999999764
No 275
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=91.76 E-value=0.26 Score=36.16 Aligned_cols=47 Identities=19% Similarity=0.184 Sum_probs=36.2
Q ss_pred CCeeccEEEECccCcccccc-CeEEEEEEeCCCCC----C-ccceeEEeecccc
Q psy12137 4 NPEFHEKLTFYSVSETDLSL-QSLHILVLDDDKYG----H-DFLGEARFPLNRL 51 (224)
Q Consensus 4 nP~w~e~f~f~~v~~~~~~~-~~l~i~v~d~d~~~----~-~~lG~~~i~l~~~ 51 (224)
++.|||-..| .|...+++. ..|.|.||++.... . ..||.+.++|=+-
T Consensus 54 ~~~WnEwL~f-pI~i~dLPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 54 NPRWNEWLDY-DIYIPDLPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred CCccceeEEc-ccchhcCChhheEEEEEEEEecccCCCCceEEEEEEEEEEECC
Confidence 6889999999 588888854 66999999987421 2 5689998887554
No 276
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=90.72 E-value=0.43 Score=35.60 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=26.1
Q ss_pred CCCeeccEEEECccCcccccc-CeEEEEEEeCCC
Q psy12137 3 INPEFHEKLTFYSVSETDLSL-QSLHILVLDDDK 35 (224)
Q Consensus 3 ~nP~w~e~f~f~~v~~~~~~~-~~l~i~v~d~d~ 35 (224)
-++.|||.+.| .|...+|+. ..|.|.||++..
T Consensus 55 ~~~~Wnewl~F-~I~i~dLPr~ArLciti~~~~~ 87 (173)
T cd08693 55 NDPVWNETLEF-DINVCDLPRMARLCFAIYEVSK 87 (173)
T ss_pred CccccceeEEc-ccchhcCChhHeEEEEEEEecc
Confidence 35889999999 688888854 669999999864
No 277
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=90.47 E-value=1.8 Score=28.54 Aligned_cols=50 Identities=24% Similarity=0.258 Sum_probs=35.3
Q ss_pred CCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC
Q psy12137 119 SDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 176 (224)
Q Consensus 119 ~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~ 176 (224)
.+..+.+++. ++....|.-+. ..+..|++.|.|.+.. ...|.|.||.+|.
T Consensus 9 ~eV~avLklD---n~~VgqT~Wk~-~s~q~WDQ~Fti~LdR----sRELEI~VywrD~ 58 (98)
T cd08687 9 SEVSAVLKLD---NTVVGQTQWKP-KSNQAWDQSFTLELER----SRELEIAVYWRDW 58 (98)
T ss_pred cceEEEEEEc---CeEEeeccccc-cccccccceeEEEeec----ccEEEEEEEEecc
Confidence 5677777773 22455555543 3578999999999843 3689999998774
No 278
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=90.12 E-value=5 Score=28.25 Aligned_cols=89 Identities=17% Similarity=0.244 Sum_probs=51.2
Q ss_pred CEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeE-eeeeeeCCCCCee-ceEEEEEeecCcccccEEEEEEEECC
Q psy12137 98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKY-KTGVKWKTLNPIF-NEEFAIETKITELSKQTLVITVWDKD 175 (224)
Q Consensus 98 ~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~-~T~~~~~~~~p~~-~e~f~f~~~~~~~~~~~l~i~v~~~~ 175 (224)
..|.+.-+.-.++|..+..+.+.||++++- +.... .+...... .... ...+.+.+...-+-...+.|.+|+.+
T Consensus 4 ~~l~L~~I~l~~iP~f~~~~gc~p~i~I~~----~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~GDV~i~~~~~~ 78 (134)
T PF10409_consen 4 RPLFLKSIILHGIPNFNSGGGCRPYIEIYN----GGKKVFSTSKSYED-PKSYEQDSVIIELPKNLPLRGDVLIKFYHKR 78 (134)
T ss_dssp -EEEEEEEEEES-TTSTTSSCCTEEEEEEE----TTEEEEETCCTCCC-CCEEETTCEEEEEEEEEEEESEEEEEEEECE
T ss_pred eeEEEEEEEEECCCccCCCCCEEEEEEEEC----CCccEEEeccceec-cccccceeEEEEeCCCCeEeCCEEEEEEeCC
Confidence 455666666677887766678899999985 33222 22222111 1111 23344443322222578999999987
Q ss_pred C-CCCCceeEEEEEecC
Q psy12137 176 Y-GKSNDYLGCLELCCN 191 (224)
Q Consensus 176 ~-~~~~~~lG~~~l~l~ 191 (224)
. ...++.+.++++.-.
T Consensus 79 ~~~~~~~~~f~~~FnT~ 95 (134)
T PF10409_consen 79 SSSMSKEKMFRFWFNTG 95 (134)
T ss_dssp TTECCCEEEEEEEEEGG
T ss_pred CcccccCeEEEEEEeee
Confidence 3 445678888888744
No 279
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=89.95 E-value=0.4 Score=35.65 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=35.4
Q ss_pred CCeeccEEEECccCccccc-cCeEEEEEEeCCCCC---------C-ccceeEEeecccc
Q psy12137 4 NPEFHEKLTFYSVSETDLS-LQSLHILVLDDDKYG---------H-DFLGEARFPLNRL 51 (224)
Q Consensus 4 nP~w~e~f~f~~v~~~~~~-~~~l~i~v~d~d~~~---------~-~~lG~~~i~l~~~ 51 (224)
.+.|||...| .+...+++ +..|.|.||+....+ . ..||-+.++|=+.
T Consensus 62 ~~~Wnewl~F-~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 62 RVVWDEWIEF-PIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred cccccceEEC-ccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 4669999999 56677664 466999999987554 4 6888888886543
No 280
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=88.96 E-value=1.7 Score=28.60 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=30.8
Q ss_pred CCeeccEEEECccCccccccCeEEEEEEeCCCCCCccceeEEeecccc
Q psy12137 4 NPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRL 51 (224)
Q Consensus 4 nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~ 51 (224)
+..|++.|.+ .+. ..+.|+|.||=.| -+..-|-..+.|++.
T Consensus 32 ~q~WDQ~Fti-~Ld----RsRELEI~VywrD--~RslCav~~lrLEd~ 72 (98)
T cd08687 32 NQAWDQSFTL-ELE----RSRELEIAVYWRD--WRSLCAVKFLKLEDE 72 (98)
T ss_pred cccccceeEE-Eee----cccEEEEEEEEec--chhhhhheeeEhhhh
Confidence 5789999999 343 3689999999776 345667777888873
No 281
>KOG4027|consensus
Probab=88.05 E-value=8.4 Score=28.09 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=34.2
Q ss_pred ccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCCC
Q psy12137 164 KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL 222 (224)
Q Consensus 164 ~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~~ 222 (224)
...|.+.||.+|..++|.+.|-.-|.+-. .|++...+-|-+.|.+.
T Consensus 82 WPqivl~vfg~d~~G~d~v~GYg~~hiP~-------------~pgrh~~~vp~f~Pe~~ 127 (187)
T KOG4027|consen 82 WPQIVLNVFGKDHSGKDCVTGYGMLHIPT-------------EPGRHVCRVPCFLPEPS 127 (187)
T ss_pred CceEEEEEecCCcCCcceeeeeeeEecCc-------------CCCceeEEEeeEecCCH
Confidence 36899999999999999999888777644 34556666666666554
No 282
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=87.85 E-value=1.5 Score=32.98 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=38.1
Q ss_pred CCCCeeccEEEECccCccccccCeEEEEEEeCCCC---------CC-ccceeEEeeccc
Q psy12137 2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY---------GH-DFLGEARFPLNR 50 (224)
Q Consensus 2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~---------~~-~~lG~~~i~l~~ 50 (224)
+-+|.|+|++.+ .++......-.|.|..|+..-. +. ..+|.+-+||-.
T Consensus 66 ~k~P~f~dEiKI-~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 66 NQNPEFYDEIKI-ELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred CCCCccceeEEE-ecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 458999999999 7998888888999999997621 12 458888888754
No 283
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=87.37 E-value=9.8 Score=28.13 Aligned_cols=85 Identities=15% Similarity=0.087 Sum_probs=53.7
Q ss_pred EEEEEEeecCCCCCCCCCCCcEEEEEEecCCC------CC-eEeeeeeeC-----CCCCeeceEEEEEeecCcccc-cEE
Q psy12137 101 IVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH------KR-KYKTGVKWK-----TLNPIFNEEFAIETKITELSK-QTL 167 (224)
Q Consensus 101 ~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~------~~-~~~T~~~~~-----~~~p~~~e~f~f~~~~~~~~~-~~l 167 (224)
.=.|..|.+.. ..+.||+..+..+.+ .. ...|.+.+. .....||-.|.+.+....+.. ..|
T Consensus 5 ~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L 78 (168)
T PF07162_consen 5 IGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQL 78 (168)
T ss_pred EEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceE
Confidence 34566676553 236788877643221 12 334444332 345789988888865554443 689
Q ss_pred EEEEEECCCCCCCceeEEEEEecC
Q psy12137 168 VITVWDKDYGKSNDYLGCLELCCN 191 (224)
Q Consensus 168 ~i~v~~~~~~~~~~~lG~~~l~l~ 191 (224)
.|+||..|..+++.+.|-..+.+-
T Consensus 79 ~l~V~~~D~~gr~~~~GYG~~~lP 102 (168)
T PF07162_consen 79 VLQVYSLDSWGRDRVEGYGFCHLP 102 (168)
T ss_pred EEEEEEEcccCCeEEeEEeEEEeC
Confidence 999999999999888876655544
No 284
>KOG1265|consensus
Probab=87.26 E-value=0.47 Score=43.56 Aligned_cols=47 Identities=32% Similarity=0.654 Sum_probs=36.6
Q ss_pred CCCCCeeccE-EEECccCccccccCeEEEEEEeCCCCCCccceeEEeeccccC
Q psy12137 1 RTINPEFHEK-LTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLR 52 (224)
Q Consensus 1 ~t~nP~w~e~-f~f~~v~~~~~~~~~l~i~v~d~d~~~~~~lG~~~i~l~~~~ 52 (224)
|++||+|+|. |.|..|-..++ ..|+|.||+- +..+||+=.+|+..+.
T Consensus 748 n~~npvy~eepfvF~KVvLpeL--A~lRiavyeE---ggK~ig~RIlpvd~l~ 795 (1189)
T KOG1265|consen 748 NSFNPVYEEEPFVFRKVVLPEL--ASLRIAVYEE---GGKFIGQRILPVDGLN 795 (1189)
T ss_pred CCCCcccccCCcccceecccch--hheeeeeecc---CCceeeeeccchhccc
Confidence 5789999975 77755545544 4899999976 4479999999999884
No 285
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=86.22 E-value=1.9 Score=32.27 Aligned_cols=48 Identities=17% Similarity=0.238 Sum_probs=37.2
Q ss_pred CCCCeeccEEEECccCccccccCeEEEEEEeCCCC----C--C-ccceeEEeeccc
Q psy12137 2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY----G--H-DFLGEARFPLNR 50 (224)
Q Consensus 2 t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~----~--~-~~lG~~~i~l~~ 50 (224)
+-+|.|+|++.. .+|........|.|..|+.... + . ..+|.+-+||-+
T Consensus 64 nk~P~f~DEiKi-~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 64 NKSPDFYDEIKI-KLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred CCCCcccceEEE-EcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 457999999999 7988888888999999996531 1 1 457888777653
No 286
>KOG1327|consensus
Probab=84.71 E-value=3 Score=36.51 Aligned_cols=57 Identities=30% Similarity=0.443 Sum_probs=43.0
Q ss_pred CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC----CCCCceeEEEEEecCC
Q psy12137 134 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY----GKSNDYLGCLELCCNS 192 (224)
Q Consensus 134 ~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~----~~~~~~lG~~~l~l~~ 192 (224)
...+|.++++..+|.|-+.|.+.--.+.. ..|.+.+++.+. ....+++|++...+..
T Consensus 41 e~~rte~i~~~~~p~f~~~~~l~y~fE~v--Q~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ 101 (529)
T KOG1327|consen 41 EVGRTEVIRNVLNPFFTKKFLLQYRFEKV--QLLRFEVYDIDSRTPDLSSADFLGTAECTLSQ 101 (529)
T ss_pred cccceeeeeccCCccceeeechhheeeee--eeEEEEEeecCCccCCcchhcccceeeeehhh
Confidence 34588999999999999998776544443 478999998663 3456799998887763
No 287
>KOG0906|consensus
Probab=84.15 E-value=1.6 Score=39.01 Aligned_cols=75 Identities=20% Similarity=0.246 Sum_probs=52.2
Q ss_pred CCCcEEEEEEecCCCC--CeEeeeeeeCCCCCeeceEEEEEeecCccc-ccEEEEEEEECCCCCCCceeEEEEEecCC
Q psy12137 118 FSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDKDYGKSNDYLGCLELCCNS 192 (224)
Q Consensus 118 ~~dpyv~~~~~~~~~~--~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~-~~~l~i~v~~~~~~~~~~~lG~~~l~l~~ 192 (224)
.+|.|++..+...+.. .-.+|+.+..+..-.|||.+.+++...++. ++.+.|++|+........++|..++.+..
T Consensus 46 ~~~l~~~c~v~~~~~~~~lP~~ts~~~~~~~~~wnewLtlpvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 46 SSDLYVTCQVFAEGKPFALPVRTSYKAFSKRINWNEWLTLPVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred chhhhheeeeeccCCcccCCccccccccCCccchhhhhccccccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 4566776666544322 233455444444456999999997766665 46799999998766677899999999875
No 288
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=83.22 E-value=8.5 Score=28.46 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=34.2
Q ss_pred CeeccEEEECccCcccccc-CeEEEEEEeCCCCCC-ccceeEEeeccccCC
Q psy12137 5 PEFHEKLTFYSVSETDLSL-QSLHILVLDDDKYGH-DFLGEARFPLNRLRP 53 (224)
Q Consensus 5 P~w~e~f~f~~v~~~~~~~-~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~ 53 (224)
-.||--|+++ .....+.. -.|.|+||..|..++ ...|...+.|-.-..
T Consensus 57 ~~f~~P~d~~-~~~~~~~gwP~L~l~V~~~D~~gr~~~~GYG~~~lP~~pG 106 (168)
T PF07162_consen 57 AVFNHPFDLH-FKSTNPQGWPQLVLQVYSLDSWGRDRVEGYGFCHLPTQPG 106 (168)
T ss_pred eEEeccEEEE-EEeCCCCCCceEEEEEEEEcccCCeEEeEEeEEEeCCCCc
Confidence 4688888884 33333323 579999999999999 888777777655543
No 289
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=81.26 E-value=8.9 Score=26.13 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=31.1
Q ss_pred CeEeeeeeeCCCCCeeceEEEEEeecCc-----ccccEEEEEEEECCCCCCCceeEEEEEecCC
Q psy12137 134 RKYKTGVKWKTLNPIFNEEFAIETKITE-----LSKQTLVITVWDKDYGKSNDYLGCLELCCNS 192 (224)
Q Consensus 134 ~~~~T~~~~~~~~p~~~e~f~f~~~~~~-----~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~ 192 (224)
..+.|.+.. ..+|.+|-+-.|.+...+ +....+.|+++.... .....+|.+.+++..
T Consensus 11 Etq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ 72 (107)
T PF11618_consen 11 ETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRP 72 (107)
T ss_dssp --EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SH
T ss_pred eeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechh
Confidence 677888887 679999999999875443 335789999998763 346799999999874
No 290
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=80.92 E-value=2.5 Score=31.70 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=26.5
Q ss_pred CCCeeccEEEECccCcccccc-CeEEEEEEeCCCC
Q psy12137 3 INPEFHEKLTFYSVSETDLSL-QSLHILVLDDDKY 36 (224)
Q Consensus 3 ~nP~w~e~f~f~~v~~~~~~~-~~l~i~v~d~d~~ 36 (224)
-+|.|||-..| .|...+++. ..|.|.||++...
T Consensus 57 ~~~~WnEwL~f-~I~~~dLP~~arLc~ti~~~~~~ 90 (178)
T cd08399 57 EEVLWNTWLEF-DIKIKDLPKGALLNLQIYCGKAP 90 (178)
T ss_pred CCccccccEEC-ccccccCChhhEEEEEEEEEecC
Confidence 46889999999 588888854 6699999998543
No 291
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=76.21 E-value=3.4 Score=27.63 Aligned_cols=31 Identities=26% Similarity=0.402 Sum_probs=25.1
Q ss_pred CCeeccEEEECccCcccccc-CeEEEEEEeCCC
Q psy12137 4 NPEFHEKLTFYSVSETDLSL-QSLHILVLDDDK 35 (224)
Q Consensus 4 nP~w~e~f~f~~v~~~~~~~-~~l~i~v~d~d~ 35 (224)
.+.|||-..| .|...+++. ..|.|.||+...
T Consensus 61 ~~~Wnewl~f-~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 61 SVKWNEWLTF-PIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred CcccceeEEc-cCchhcCChhhEEEEEEEEeeC
Confidence 4789999999 588887754 669999999753
No 292
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=74.55 E-value=9.4 Score=26.00 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=30.9
Q ss_pred CCCCeeccEEEECccCcccc-----ccCeEEEEEEeCCCCCC-ccceeEEeeccccCCCcc
Q psy12137 2 TINPEFHEKLTFYSVSETDL-----SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHIS 56 (224)
Q Consensus 2 t~nP~w~e~f~f~~v~~~~~-----~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~~~ 56 (224)
..+|.+|-+-.| .|..+++ ++..|.|+++..- ..+ ..||.+.+++..+....+
T Consensus 20 G~~p~y~fts~y-~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll~~~~ 78 (107)
T PF11618_consen 20 GLNPFYDFTSQY-KVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLLESNG 78 (107)
T ss_dssp SSS----EEEEE-EE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH--S
T ss_pred CCCccceeEEEE-EEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhhcCCC
Confidence 478999999998 5666553 4578999999876 345 899999999999974443
No 293
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=73.52 E-value=32 Score=24.92 Aligned_cols=95 Identities=17% Similarity=0.116 Sum_probs=49.7
Q ss_pred CCCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC---CeEeeeee--eCCCCCeeceEEEEEeecCcccc-cEEEE
Q psy12137 96 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK---RKYKTGVK--WKTLNPIFNEEFAIETKITELSK-QTLVI 169 (224)
Q Consensus 96 ~~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~---~~~~T~~~--~~~~~p~~~e~f~f~~~~~~~~~-~~l~i 169 (224)
....|.|.|-+.. |.. +....|||+.+++.+..|. ..+.|.+. +....-.|+....++.+.+.+.. ..|.+
T Consensus 11 g~t~l~v~Iekig-lkd--a~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~f 87 (147)
T PF14186_consen 11 GMTYLSVFIEKIG-LKD--ASQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFF 87 (147)
T ss_dssp T--EEEEEEEEEE--TT--GGG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEE
T ss_pred CCceEEEEEEEEE-ECC--hHHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEE
Confidence 3455666666664 533 3345799999999887766 45667665 22333566777676655455554 45778
Q ss_pred EEEECCCCCC-CceeEEEEEecCCC
Q psy12137 170 TVWDKDYGKS-NDYLGCLELCCNSK 193 (224)
Q Consensus 170 ~v~~~~~~~~-~~~lG~~~l~l~~~ 193 (224)
++.++..-.+ -...+.+.+.++..
T Consensus 88 E~kH~K~kk~k~S~kcw~fme~dei 112 (147)
T PF14186_consen 88 EFKHYKPKKKKTSTKCWAFMELDEI 112 (147)
T ss_dssp EEEEEETTTTCEEEEEEEEEEGGG-
T ss_pred EEEeeeccceeeeeeEEEEEEhhhc
Confidence 8887654333 23566777777653
No 294
>KOG4269|consensus
Probab=67.75 E-value=6.1 Score=36.76 Aligned_cols=97 Identities=16% Similarity=0.037 Sum_probs=62.1
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCC-CeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECC
Q psy12137 97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 175 (224)
Q Consensus 97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~-~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~ 175 (224)
.+.+.+.+..|..+.. ....||...+..-+.. .+.+|.+++++..|.||+.|..++- . .....+..++++
T Consensus 758 ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~--~--sqS~r~~~~ek~ 828 (1112)
T KOG4269|consen 758 YGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVI--E--SQSSRLEKTEKS 828 (1112)
T ss_pred ccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchh--h--ccccchhhhccc
Confidence 5678888888877643 2467888776433222 6789999999999999999887752 2 234556666544
Q ss_pred ----------CCCCCceeEEEEEecCCCCCccchhhh
Q psy12137 176 ----------YGKSNDYLGCLELCCNSKGDRLRHWVD 202 (224)
Q Consensus 176 ----------~~~~~~~lG~~~l~l~~~~~~~~~w~~ 202 (224)
....+...|+..+.+......-..|+.
T Consensus 829 ~~~~k~~~~~~~~~~~~~~~~~~~l~~~~~~d~d~~t 865 (1112)
T KOG4269|consen 829 TPVEKLIDSHSQNSQNEEKRSRMKLDPQPHHDADWYT 865 (1112)
T ss_pred chHHHhhhccchhhcccccccccccCccccccccCcc
Confidence 123344667776666654433444554
No 295
>KOG0904|consensus
Probab=66.27 E-value=51 Score=31.08 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=46.3
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcE--EEEEEecCCCC--CeEeeeeeeCCCCCeeceEEEEEeecCcccc-cEEEEEE
Q psy12137 97 KRALIVNLIKCTNLIPMDSNGFSDPF--IKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELSK-QTLVITV 171 (224)
Q Consensus 97 ~~~l~v~i~~a~~L~~~~~~g~~dpy--v~~~~~~~~~~--~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~-~~l~i~v 171 (224)
...+.|+++.+.++.. ....|-+ |.+.+..++.. +...|.-......|.||+.+.|++.-.++.. +.|.|.|
T Consensus 342 ~~~frI~l~~is~~n~---~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~i~DLPr~ArLc~~i 418 (1076)
T KOG0904|consen 342 DRPFRIKLVGISKVNL---PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIYIKDLPRMARLCLAI 418 (1076)
T ss_pred CCceEEEEeeccccCC---CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeeecCCCChhhhheeee
Confidence 5567888888866532 2233444 44444433322 3345555555778999999999987666664 4577777
Q ss_pred EE
Q psy12137 172 WD 173 (224)
Q Consensus 172 ~~ 173 (224)
|.
T Consensus 419 ~~ 420 (1076)
T KOG0904|consen 419 YA 420 (1076)
T ss_pred eE
Confidence 75
No 296
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=56.60 E-value=1.2e+02 Score=25.50 Aligned_cols=98 Identities=14% Similarity=0.194 Sum_probs=63.8
Q ss_pred CCEEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCC-C-eeceEEEEEeecCcccccEEEEEEEEC
Q psy12137 97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLN-P-IFNEEFAIETKITELSKQTLVITVWDK 174 (224)
Q Consensus 97 ~~~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~-p-~~~e~f~f~~~~~~~~~~~l~i~v~~~ 174 (224)
.-.|.|.|.+..++.. ....|+.+.. ++...+|..+.-+.. - .-.+.....+. -+...|.+.+|..
T Consensus 57 kF~LLVeI~EI~~i~k-----~khiyIef~~----Gr~d~TT~~IpTsKK~RI~IqqRV~IkIR---QcDnTLkI~lfKK 124 (508)
T PTZ00447 57 TFYLLVKINEIFNINK-----YKHIYIIFST----DKYDFTTDEIPTNKKNRIHIDQRVDIKIR---QCDETLRVDLFTT 124 (508)
T ss_pred eeeEEEEehhhhcccc-----ceeEEEEEEc----CceEEEccccccCcCceEEEeeeeeeeee---ecCceEEEEEEec
Confidence 4456777777665533 3467888887 666777754432222 1 33455554552 2247899999987
Q ss_pred CCCCCCceeEEEEEecCC----CCCccchhhhhhcCC
Q psy12137 175 DYGKSNDYLGCLELCCNS----KGDRLRHWVDMMKYP 207 (224)
Q Consensus 175 ~~~~~~~~lG~~~l~l~~----~~~~~~~w~~l~~~~ 207 (224)
.-. +...||.+.+++++ ..-+...|+-|...+
T Consensus 125 kLv-kk~hIgdI~InIn~dIIdk~FPKnkWy~c~kDG 160 (508)
T PTZ00447 125 KLT-KKVHIGQIKIDINASVISKSFPKNEWFVCFKDG 160 (508)
T ss_pred ccc-ceeEEEEEEecccHHHHhccCCccceEEEecCC
Confidence 654 56799999999985 346778899886544
No 297
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=51.21 E-value=97 Score=22.84 Aligned_cols=44 Identities=16% Similarity=0.301 Sum_probs=33.4
Q ss_pred eeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeeccccCCC
Q psy12137 6 EFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 54 (224)
Q Consensus 6 ~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~~~~ 54 (224)
.|||.|.+ .|.. + =+.|.++||-... .+ ..|+++.+|+-.....
T Consensus 65 ~f~~~f~v-~i~~--~-Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~~ 109 (168)
T PF15625_consen 65 HFNEIFNV-QITR--W-PESIKLEIYEKSG-LSDRLLAEVFVPVPGSTVH 109 (168)
T ss_pred eccCEEEE-EEec--C-CCEEEEEEEEccC-ccceEEEEEEeeCCCCccc
Confidence 57888888 4533 3 4689999999887 44 8999999998776433
No 298
>KOG1329|consensus
Probab=42.29 E-value=19 Score=33.70 Aligned_cols=83 Identities=17% Similarity=0.275 Sum_probs=56.9
Q ss_pred CCcEEEEEEecCCCC-CeEeeeeeeCC-CCCeeceEEEEEeecCcccccEEEEEEEECCCCCCCceeEEEEEecCC--CC
Q psy12137 119 SDPFIKLYLKPDLHK-RKYKTGVKWKT-LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS--KG 194 (224)
Q Consensus 119 ~dpyv~~~~~~~~~~-~~~~T~~~~~~-~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~--~~ 194 (224)
.++|+.+.+ .+ ...+|...... .+|.|.+.|..... . ....+.+.+-+.+..+--..+|.+.+++.. .+
T Consensus 138 ~e~Ylt~~l----~~~~~~~t~~~~~f~e~s~~~f~~~~~~~--h-~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~ 210 (887)
T KOG1329|consen 138 LENYLTVVL----HKARYRRTHVIYEFLENSRWSFSFDIGFA--H-KAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSG 210 (887)
T ss_pred ccchheeee----chhhhhchhhhhcccccchhhhhcccccc--c-cccEEEEeecCCccccceeEEEEeccchhhhhcc
Confidence 478999887 33 45566666555 68999998876653 2 246888898888776645689999999764 33
Q ss_pred CccchhhhhhcCCC
Q psy12137 195 DRLRHWVDMMKYPD 208 (224)
Q Consensus 195 ~~~~~w~~l~~~~~ 208 (224)
.....|+.++.+-+
T Consensus 211 ~~~~~~~~Il~~d~ 224 (887)
T KOG1329|consen 211 HRIGGWFPILDNDG 224 (887)
T ss_pred ccccceeeeeccCC
Confidence 55556666655443
No 299
>PRK14280 chaperone protein DnaJ; Provisional
Probab=34.06 E-value=1.8e+02 Score=24.61 Aligned_cols=83 Identities=13% Similarity=0.118 Sum_probs=43.7
Q ss_pred eEEEEEEeCCCCCC---ccceeEEeeccccCCCcccceeecccccccCCCcccccCcccceeceEEEEEEEEeCCCCEEE
Q psy12137 25 SLHILVLDDDKYGH---DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALI 101 (224)
Q Consensus 25 ~l~i~v~d~d~~~~---~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~g~l~i~~~~~~~~~~l~ 101 (224)
.+.|.|-.+..+.+ ++.-.+.|+|.+........ +. ..-|.+.|.+---...+ .
T Consensus 251 ~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~----i~-----------------tldg~i~v~ip~g~~~g--~ 307 (376)
T PRK14280 251 YVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIE----VP-----------------TLHGKVKLKIPAGTQTG--T 307 (376)
T ss_pred EEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEE----Ee-----------------cCCceEEEEECCCCCCC--c
Confidence 45566666655543 56666666666664332211 11 11244433332111122 4
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEEecC
Q psy12137 102 VNLIKCTNLIPMDSNGFSDPFIKLYLKPD 130 (224)
Q Consensus 102 v~i~~a~~L~~~~~~g~~dpyv~~~~~~~ 130 (224)
+..++.+++|........|.||++.+..+
T Consensus 308 ~~~i~g~G~p~~~~~~~GDL~v~~~v~~P 336 (376)
T PRK14280 308 QFRLKGKGVPNVRGYGQGDQYVVVRVVTP 336 (376)
T ss_pred EEEEcCCCCCCCCCCCCCCEEEEEEEECC
Confidence 44567888875443346799999988543
No 300
>KOG0694|consensus
Probab=33.91 E-value=17 Score=32.97 Aligned_cols=51 Identities=24% Similarity=0.213 Sum_probs=35.4
Q ss_pred CCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECC
Q psy12137 118 FSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 175 (224)
Q Consensus 118 ~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~ 175 (224)
..+||+.+.+.- ++...+...+.+..|.|+++|...+.. ...+.|.++...
T Consensus 27 al~~y~~v~vk~---~~~~~~~~~~~~~~~~~~~~F~~~v~~----~~~~~i~v~~~~ 77 (694)
T KOG0694|consen 27 ALQPYLAVELKV---KQGAENMTKVELRIPELRETFHVEVVA----GGAKNIIVLLKS 77 (694)
T ss_pred hhhhhheeccce---eecccccCCCCCCCchhhhheeeeeec----CCceEEEEEecC
Confidence 357888887731 133344456778999999999988632 357888888764
No 301
>PRK14276 chaperone protein DnaJ; Provisional
Probab=33.61 E-value=1.8e+02 Score=24.69 Aligned_cols=83 Identities=8% Similarity=0.040 Sum_probs=44.0
Q ss_pred eEEEEEEeCCCCCC---ccceeEEeeccccCCCcccceeecccccccCCCcccccCcccceeceEEEEEEEEeCCCCEEE
Q psy12137 25 SLHILVLDDDKYGH---DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALI 101 (224)
Q Consensus 25 ~l~i~v~d~d~~~~---~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~g~l~i~~~~~~~~~~l~ 101 (224)
.+.|.|..+..|.+ ++.-.+.|+|.+........ +. ...|.+.|.+- +....=.
T Consensus 254 ~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~----v~-----------------tldg~i~v~ip--~g~~~g~ 310 (380)
T PRK14276 254 YVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVE----VP-----------------TVHGDVELKIP--AGTQTGK 310 (380)
T ss_pred EEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEE----EE-----------------cCCCcEEEEEC--CCCCCCC
Confidence 45666666665553 56667777766664333221 11 11233333332 2222223
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEEecC
Q psy12137 102 VNLIKCTNLIPMDSNGFSDPFIKLYLKPD 130 (224)
Q Consensus 102 v~i~~a~~L~~~~~~g~~dpyv~~~~~~~ 130 (224)
+..+++++++........|.||++.+.-+
T Consensus 311 ~~~i~g~G~p~~~~~~~GDL~V~~~v~~P 339 (380)
T PRK14276 311 KFRLRGKGAPKLRGGGNGDQHVTVNIVTP 339 (380)
T ss_pred EEEECCCCcCCCCCCCCCCEEEEEEEECC
Confidence 44567888875443345799999988533
No 302
>PRK14301 chaperone protein DnaJ; Provisional
Probab=33.47 E-value=2.8e+02 Score=23.43 Aligned_cols=83 Identities=12% Similarity=0.066 Sum_probs=44.8
Q ss_pred eEEEEEEeCCCCCC---ccceeEEeeccccCCCcccceeecccccccCCCcccccCcccceeceEEEEEEEEeCCCCEEE
Q psy12137 25 SLHILVLDDDKYGH---DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALI 101 (224)
Q Consensus 25 ~l~i~v~d~d~~~~---~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~g~l~i~~~~~~~~~~l~ 101 (224)
.+.|.|..++.+.+ ++.-.+.|+|.+........ +. ..-|.+.|.+- +....=.
T Consensus 248 iv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~----v~-----------------tldG~i~v~ip--~g~~~g~ 304 (373)
T PRK14301 248 YVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIE----VP-----------------TLDDPVTLDIP--KGTQSGE 304 (373)
T ss_pred EEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEE----Ee-----------------cCCccEEEEEC--CCcCCCc
Confidence 45566666665553 56666667766664333221 10 11244433332 2222224
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEEecC
Q psy12137 102 VNLIKCTNLIPMDSNGFSDPFIKLYLKPD 130 (224)
Q Consensus 102 v~i~~a~~L~~~~~~g~~dpyv~~~~~~~ 130 (224)
+..++++++|........|.||++.+..+
T Consensus 305 ~~ri~g~G~p~~~~~~~GDL~I~~~V~~P 333 (373)
T PRK14301 305 VFRLRGKGLPYLGSSQKGDLLVEVSVVTP 333 (373)
T ss_pred EEEEcCCCCCCCCCCCCCCEEEEEEEECC
Confidence 45667888876443346799999998543
No 303
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=33.30 E-value=64 Score=21.97 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=28.8
Q ss_pred EEEECccCccccc----cCeEEEEEEeCCC---CCC-ccceeEEeeccccC
Q psy12137 10 KLTFYSVSETDLS----LQSLHILVLDDDK---YGH-DFLGEARFPLNRLR 52 (224)
Q Consensus 10 ~f~f~~v~~~~~~----~~~l~i~v~d~d~---~~~-~~lG~~~i~l~~~~ 52 (224)
++-| .++.+++. ...|.+.+++... ... ..||.+.+++.+..
T Consensus 12 ScLF-~~~~~~L~~~l~~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~ 61 (112)
T PF14924_consen 12 SCLF-ALTPEDLQQSLSSFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAF 61 (112)
T ss_pred EEEE-EcCHHHHHHHhhCCceEEEEEecCCCCCCCccceeeEEEecHHHHH
Confidence 3344 34455443 5678888887654 244 89999999999884
No 304
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=32.01 E-value=89 Score=19.73 Aligned_cols=27 Identities=19% Similarity=0.475 Sum_probs=21.6
Q ss_pred cEEEEEEEECCCCCCCceeEEEEEecC
Q psy12137 165 QTLVITVWDKDYGKSNDYLGCLELCCN 191 (224)
Q Consensus 165 ~~l~i~v~~~~~~~~~~~lG~~~l~l~ 191 (224)
....|++|+.+.+..|++|+.+.-+-+
T Consensus 12 ~~~~V~L~e~d~~~~Ddll~~~~Td~~ 38 (80)
T PF01060_consen 12 KNVKVKLWEDDYFDPDDLLDETKTDSD 38 (80)
T ss_pred CCCEEEEEECCCCCCCceeEEEEECCC
Confidence 456799999998778999988777544
No 305
>PRK10767 chaperone protein DnaJ; Provisional
Probab=31.23 E-value=2e+02 Score=24.19 Aligned_cols=30 Identities=7% Similarity=0.125 Sum_probs=20.8
Q ss_pred EEEEEEeecCCCCCCCCCCCcEEEEEEecC
Q psy12137 101 IVNLIKCTNLIPMDSNGFSDPFIKLYLKPD 130 (224)
Q Consensus 101 ~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~ 130 (224)
.+..+++++++........|.||++.+..+
T Consensus 302 ~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P 331 (371)
T PRK10767 302 KLFRLRGKGVKSVRSGARGDLYCQVVVETP 331 (371)
T ss_pred CEEEECCCCcCCCCCCCCCCEEEEEEEECC
Confidence 445677888875443446899999998543
No 306
>PRK14284 chaperone protein DnaJ; Provisional
Probab=30.80 E-value=2.9e+02 Score=23.50 Aligned_cols=85 Identities=11% Similarity=0.136 Sum_probs=45.0
Q ss_pred eEEEEEEeCCCCCC---ccceeEEeeccccCCCcccceeecccccccCCCcccccCcccceeceEEEEEEEEeCCCCEEE
Q psy12137 25 SLHILVLDDDKYGH---DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALI 101 (224)
Q Consensus 25 ~l~i~v~d~d~~~~---~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~g~l~i~~~~~~~~~~l~ 101 (224)
.+.|.|-.+..+.+ ++.-.+.|+|.+........ +.. ....+.|.|.+- +....=.
T Consensus 262 ~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~----v~t---------------ld~g~~i~v~Ip--~g~~~g~ 320 (391)
T PRK14284 262 YVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKE----IPT---------------LLKEGTCRLTIP--EGIQSGT 320 (391)
T ss_pred EEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEE----Eee---------------cCCCcEEEEEEC--CccCCCe
Confidence 44555555555543 56666667766664333221 100 001234444443 2222234
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEEecC
Q psy12137 102 VNLIKCTNLIPMDSNGFSDPFIKLYLKPD 130 (224)
Q Consensus 102 v~i~~a~~L~~~~~~g~~dpyv~~~~~~~ 130 (224)
+.+++.++++........|.||++.+..+
T Consensus 321 ~~~i~g~G~p~~~~~~~GDL~V~~~v~~P 349 (391)
T PRK14284 321 ILKVRGQGFPNVHGKGRGDLLVRISVETP 349 (391)
T ss_pred EEEECCCCCCCCCCCCCCcEEEEEEEECC
Confidence 55668888876543446899999998544
No 307
>KOG2060|consensus
Probab=30.58 E-value=18 Score=30.38 Aligned_cols=51 Identities=24% Similarity=0.430 Sum_probs=39.6
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEe-CCCCCC-ccceeEEeeccccCCCc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLD-DDKYGH-DFLGEARFPLNRLRPHI 55 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d-~d~~~~-~~lG~~~i~l~~~~~~~ 55 (224)
||++|.+.+...| .+.++...|.+.||. +.+.-+ .|+|.+.+-++++.-+.
T Consensus 316 kT~~plyqq~l~f----~~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~ 368 (405)
T KOG2060|consen 316 KTLDPLYQQQLSF----DQSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSS 368 (405)
T ss_pred ccCchhhhhhhhh----ccCCCccEEEEEEeccccccchHHHhhHHHHHhhhhcccc
Confidence 5788888888888 444558899999995 445555 79999999999996444
No 308
>COG5458 Uncharacterized conserved protein [Function unknown]
Probab=30.19 E-value=57 Score=22.57 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=28.9
Q ss_pred CCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeEeeeecCCCCC
Q psy12137 176 YGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL 222 (224)
Q Consensus 176 ~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~~wh~l~~~~~ 222 (224)
.+..++-||+|.+-|...- ...--.|+....+|-+|.|++.
T Consensus 77 ~ftd~egigRC~l~L~P~v------i~t~pqPrRaFQGWRYLk~~ea 117 (144)
T COG5458 77 TFTDGEGIGRCHLTLDPEV------IRTEPQPRRAFQGWRYLKPEEA 117 (144)
T ss_pred eccCCCccceeEEeeCCcc------eecCCCcccccccceecCcccC
Confidence 4556678999999887421 1112258889999999998764
No 309
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=30.11 E-value=83 Score=26.90 Aligned_cols=26 Identities=15% Similarity=0.353 Sum_probs=18.5
Q ss_pred cceeEEeeccc-cCCCcccceeecccc
Q psy12137 40 FLGEARFPLNR-LRPHISRDLCLNLCK 65 (224)
Q Consensus 40 ~lG~~~i~l~~-~~~~~~~~~~~~l~~ 65 (224)
.+|.+.|+++. +......+.|+++.+
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~ 27 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFD 27 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeecccc
Confidence 48999999999 555456666665544
No 310
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=30.07 E-value=2.1e+02 Score=20.55 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=49.2
Q ss_pred CCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecC----------cccccEEEEEEEECCCCCCCceeEEEE
Q psy12137 118 FSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT----------ELSKQTLVITVWDKDYGKSNDYLGCLE 187 (224)
Q Consensus 118 ~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~----------~~~~~~l~i~v~~~~~~~~~~~lG~~~ 187 (224)
..|.|..+++. ++.++|+.....---.|+|.|.|.-... .+....+.|++++..... ...|+...
T Consensus 19 ~~~vyL~v~~l----g~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iELiQl~~~~-g~iLA~ye 93 (140)
T PF14909_consen 19 KGDVYLSVCIL----GQYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIELIQLVPPA-GEILAYYE 93 (140)
T ss_pred CCCEEEEEEEc----ccEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEEEEEeCCC-CcEEEEEe
Confidence 55899999984 5778888876666567899999983222 223467889998866543 56788777
Q ss_pred EecCC
Q psy12137 188 LCCNS 192 (224)
Q Consensus 188 l~l~~ 192 (224)
-.+++
T Consensus 94 ~n~rD 98 (140)
T PF14909_consen 94 ENTRD 98 (140)
T ss_pred ccccc
Confidence 66653
No 311
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=29.18 E-value=3.6e+02 Score=23.40 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=21.5
Q ss_pred cEEEEEEEECCC-----C-CCCceeEEEEEecCC
Q psy12137 165 QTLVITVWDKDY-----G-KSNDYLGCLELCCNS 192 (224)
Q Consensus 165 ~~l~i~v~~~~~-----~-~~~~~lG~~~l~l~~ 192 (224)
..|+|.||.-.. + .+..+||.+.|+++.
T Consensus 95 ~~L~i~VY~Gr~G~tCGv~~~~klLG~v~vpldl 128 (460)
T PF06219_consen 95 PCLEISVYTGRRGSTCGVGNSGKLLGKVRVPLDL 128 (460)
T ss_pred ceEEEEEEECCCCCcccccccceEEEEEEEEecc
Confidence 479999998432 2 456799999999984
No 312
>KOG0694|consensus
Probab=28.14 E-value=27 Score=31.73 Aligned_cols=46 Identities=15% Similarity=0.038 Sum_probs=30.3
Q ss_pred CCCCCeeccEEEECccCccccccCeEEEEEEeCCCCCC-ccceeEEeecccc
Q psy12137 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL 51 (224)
Q Consensus 1 ~t~nP~w~e~f~f~~v~~~~~~~~~l~i~v~d~d~~~~-~~lG~~~i~l~~~ 51 (224)
++..|.|+|+|... +. ....+.|.||.....+. .+.-.+.+-.+++
T Consensus 49 ~~~~~~~~~~F~~~-v~----~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~ 95 (694)
T KOG0694|consen 49 ELRIPELRETFHVE-VV----AGGAKNIIVLLKSPDPKALSEAQLSLQEESQ 95 (694)
T ss_pred CCCCchhhhheeee-ee----cCCceEEEEEecCCcchhhHHHhHHHHHHHH
Confidence 46789999999984 32 35789999998764444 4444444444444
No 313
>KOG0906|consensus
Probab=28.07 E-value=55 Score=29.83 Aligned_cols=44 Identities=27% Similarity=0.337 Sum_probs=34.8
Q ss_pred eeccEEEECccCccccc-cCeEEEEEEeCCCCCC-ccceeEEeeccc
Q psy12137 6 EFHEKLTFYSVSETDLS-LQSLHILVLDDDKYGH-DFLGEARFPLNR 50 (224)
Q Consensus 6 ~w~e~f~f~~v~~~~~~-~~~l~i~v~d~d~~~~-~~lG~~~i~l~~ 50 (224)
.|||=..+ .|...++. ...|.|.+||++...+ .++|...+.+-.
T Consensus 78 ~wnewLtl-pvky~dLt~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 78 NWNEWLTL-PVKYSDLTRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred chhhhhcc-ccccccccccceEEEEEEecCCCceeeeccceEEEeec
Confidence 59999998 57777774 4679999999987777 899888877543
No 314
>KOG3543|consensus
Probab=27.99 E-value=1.8e+02 Score=26.55 Aligned_cols=96 Identities=14% Similarity=0.212 Sum_probs=59.7
Q ss_pred EEEEEEEEeecCCCCCCCCCCCcEEEEEEecCCCCCeEeeeeeeCCCCCeeceEEEEEeecCcccccEEEEEEEECCC--
Q psy12137 99 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY-- 176 (224)
Q Consensus 99 ~l~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~~~~~~~~T~~~~~~~~p~~~e~f~f~~~~~~~~~~~l~i~v~~~~~-- 176 (224)
-+.|.|++..+|.....+ .=.||...+ .+.+..|.....+ .|.|.-.=.|.... .+ ..+++.+|....
T Consensus 342 smevvvmevqglksvapn--rivyctmev----egeklqtdqaeas-kp~wgtqgdfstth-pl--pvvkvklftestgv 411 (1218)
T KOG3543|consen 342 SMEVVVMEVQGLKSVAPN--RIVYCTMEV----EGEKLQTDQAEAS-KPKWGTQGDFSTTH-PL--PVVKVKLFTESTGV 411 (1218)
T ss_pred eeeEEEeeeccccccCCC--eeEEEEEEe----cccccccchhhhc-CCCCCcCCCcccCC-CC--ceeEEEEEeeccee
Confidence 457888899888765432 346888877 3466677666543 69998766666432 12 367788886542
Q ss_pred -CCCCceeEEEEEecCCCCCccchhhhhh
Q psy12137 177 -GKSNDYLGCLELCCNSKGDRLRHWVDMM 204 (224)
Q Consensus 177 -~~~~~~lG~~~l~l~~~~~~~~~w~~l~ 204 (224)
.-.|.-+|++.+.-.........|+.|.
T Consensus 412 laledkelgrvil~ptpns~ks~ewh~mt 440 (1218)
T KOG3543|consen 412 LALEDKELGRVILQPTPNSAKSPEWHTMT 440 (1218)
T ss_pred EEeechhhCeEEEecCCCCcCCccceeee
Confidence 1135578888876443333344577664
No 315
>PRK14287 chaperone protein DnaJ; Provisional
Probab=27.77 E-value=2.2e+02 Score=24.09 Aligned_cols=29 Identities=7% Similarity=0.135 Sum_probs=19.8
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEEecC
Q psy12137 102 VNLIKCTNLIPMDSNGFSDPFIKLYLKPD 130 (224)
Q Consensus 102 v~i~~a~~L~~~~~~g~~dpyv~~~~~~~ 130 (224)
+..++++++|........|.||++.+..+
T Consensus 303 ~~ri~g~G~p~~~~~~~GDL~V~~~v~~P 331 (371)
T PRK14287 303 SFRLRGKGVPNVHGRGQGDQHVQVRVVTP 331 (371)
T ss_pred EEEEcCCCccCCCCCCCCCEEEEEEEEcC
Confidence 44567788875443346899999988543
No 316
>PRK14283 chaperone protein DnaJ; Provisional
Probab=27.67 E-value=2.7e+02 Score=23.62 Aligned_cols=28 Identities=11% Similarity=0.151 Sum_probs=19.1
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEEec
Q psy12137 102 VNLIKCTNLIPMDSNGFSDPFIKLYLKP 129 (224)
Q Consensus 102 v~i~~a~~L~~~~~~g~~dpyv~~~~~~ 129 (224)
+..+++++++........|.||++.+.-
T Consensus 311 ~~ri~g~G~p~~~~~~~GdL~v~~~v~~ 338 (378)
T PRK14283 311 TFRLKGHGMPSLRWSGKGNLYVKVKVVV 338 (378)
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEEEEe
Confidence 4455778887544334679999998743
No 317
>PRK14298 chaperone protein DnaJ; Provisional
Probab=26.55 E-value=2.6e+02 Score=23.75 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=20.1
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEEecC
Q psy12137 102 VNLIKCTNLIPMDSNGFSDPFIKLYLKPD 130 (224)
Q Consensus 102 v~i~~a~~L~~~~~~g~~dpyv~~~~~~~ 130 (224)
+..++.+++|........|.||++.+..+
T Consensus 306 ~lri~g~G~p~~~~~~~GDL~V~~~V~~P 334 (377)
T PRK14298 306 VFRLKDKGMPRLHGHGKGDQLVKVIVKTP 334 (377)
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEEEECC
Confidence 44567888875443346899999988543
No 318
>PRK14277 chaperone protein DnaJ; Provisional
Probab=26.44 E-value=2.7e+02 Score=23.68 Aligned_cols=28 Identities=14% Similarity=0.319 Sum_probs=19.3
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEEec
Q psy12137 102 VNLIKCTNLIPMDSNGFSDPFIKLYLKP 129 (224)
Q Consensus 102 v~i~~a~~L~~~~~~g~~dpyv~~~~~~ 129 (224)
+..++++++|........|.||++.+.-
T Consensus 320 ~~ri~g~G~p~~~~~~~GDL~v~~~V~~ 347 (386)
T PRK14277 320 KFRLRGKGIPHLRGRGRGDQIVKVYIEV 347 (386)
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEEEEe
Confidence 4456788887544334689999998743
No 319
>PRK14297 chaperone protein DnaJ; Provisional
Probab=25.57 E-value=2.7e+02 Score=23.63 Aligned_cols=29 Identities=14% Similarity=0.251 Sum_probs=19.8
Q ss_pred EEEEEEeecCCCCCCCCCCCcEEEEEEec
Q psy12137 101 IVNLIKCTNLIPMDSNGFSDPFIKLYLKP 129 (224)
Q Consensus 101 ~v~i~~a~~L~~~~~~g~~dpyv~~~~~~ 129 (224)
.+..+++++++........|.||++.+.-
T Consensus 312 ~~~ri~g~G~p~~~~~~~GDL~v~~~v~~ 340 (380)
T PRK14297 312 TVFRLKGKGVPRVNSTGRGNQYVTVIVDI 340 (380)
T ss_pred CEEEEcCCCcCCCCCCCCCcEEEEEEEEc
Confidence 34456788887544334679999998753
No 320
>PF15084 DUF4550: Domain of unknown function (DUF4550)
Probab=25.20 E-value=55 Score=21.95 Aligned_cols=29 Identities=10% Similarity=0.287 Sum_probs=22.4
Q ss_pred CeeccEEEECccCcccc---ccCeEEEEEEeCC
Q psy12137 5 PEFHEKLTFYSVSETDL---SLQSLHILVLDDD 34 (224)
Q Consensus 5 P~w~e~f~f~~v~~~~~---~~~~l~i~v~d~d 34 (224)
+.|.++|.. .++.+.+ ....|.+.+||..
T Consensus 52 v~W~~~~~i-~vt~e~l~kl~~h~i~~kiwDtk 83 (99)
T PF15084_consen 52 VSWTHTFNI-NVTKELLKKLYFHKITLKIWDTK 83 (99)
T ss_pred EEEEEEEEe-ccCHHHHHHHHcCeEEEEEEcch
Confidence 679999998 6776655 3467999999954
No 321
>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]
Probab=25.16 E-value=85 Score=23.83 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=32.2
Q ss_pred cccEEEEEEEECCCCCCCceeEEEEEecCCCCCccchhhhhhcCCCceeE
Q psy12137 163 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHE 212 (224)
Q Consensus 163 ~~~~l~i~v~~~~~~~~~~~lG~~~l~l~~~~~~~~~w~~l~~~~~~~~~ 212 (224)
....|.+++|+.+....-+-=-.++++++..-....-|..+.-.|+++++
T Consensus 115 gggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~~~ag~~lkL~PGesit 164 (225)
T COG3822 115 GGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQTHTAGSQLKLSPGESIT 164 (225)
T ss_pred CCceEEEEEeccccccCcCCCCCeEecCCCcEEEeccceeEEECCCCcEe
Confidence 35789999998874322233345566665544445557778888887765
No 322
>PRK14299 chaperone protein DnaJ; Provisional
Probab=24.85 E-value=2.1e+02 Score=23.20 Aligned_cols=29 Identities=10% Similarity=0.014 Sum_probs=19.6
Q ss_pred EEEEEEeecCCCCCCCCCCCcEEEEEEecC
Q psy12137 101 IVNLIKCTNLIPMDSNGFSDPFIKLYLKPD 130 (224)
Q Consensus 101 ~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~ 130 (224)
.+..++++++|.. .....|.||++.+..+
T Consensus 241 ~~~rl~g~G~p~~-~~~~GDL~v~~~V~~P 269 (291)
T PRK14299 241 RKLRLKGKGWPRG-PAGRGDQYAEVRITIP 269 (291)
T ss_pred CEEEECCCCCCCC-CCCCCCEEEEEEEECC
Confidence 4555678888743 2346799999998543
No 323
>PRK14286 chaperone protein DnaJ; Provisional
Probab=23.55 E-value=3e+02 Score=23.30 Aligned_cols=29 Identities=14% Similarity=0.119 Sum_probs=20.2
Q ss_pred EEEEEEeecCCCCCCCCCCCcEEEEEEec
Q psy12137 101 IVNLIKCTNLIPMDSNGFSDPFIKLYLKP 129 (224)
Q Consensus 101 ~v~i~~a~~L~~~~~~g~~dpyv~~~~~~ 129 (224)
.+..++++++|.....+..|.||++.+.-
T Consensus 311 ~~~ri~G~G~P~~~~~~~GDL~V~~~V~~ 339 (372)
T PRK14286 311 QVFRLKGHGMPYLGAYGKGDQHVIVKIEI 339 (372)
T ss_pred cEEEECCCCCCCCCCCCCCcEEEEEEEEC
Confidence 34556788887654344679999999853
No 324
>PRK14294 chaperone protein DnaJ; Provisional
Probab=22.74 E-value=4.1e+02 Score=22.36 Aligned_cols=30 Identities=17% Similarity=0.188 Sum_probs=20.1
Q ss_pred EEEEEEeecCCCCCCCCCCCcEEEEEEecC
Q psy12137 101 IVNLIKCTNLIPMDSNGFSDPFIKLYLKPD 130 (224)
Q Consensus 101 ~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~ 130 (224)
.+..+++++++........|.||++.+..+
T Consensus 304 ~~iri~G~G~p~~~~~~~GDL~V~~~v~~P 333 (366)
T PRK14294 304 DIFRFKGKGIPSLRGGGRGDQIIEVEVKVP 333 (366)
T ss_pred CEEEECCCCCCCCCCCCCCCEEEEEEEECC
Confidence 344567888875443345799999988543
No 325
>PRK14278 chaperone protein DnaJ; Provisional
Probab=22.46 E-value=3.2e+02 Score=23.14 Aligned_cols=29 Identities=14% Similarity=0.102 Sum_probs=20.1
Q ss_pred EEEEEEeecCCCCCCCCCCCcEEEEEEec
Q psy12137 101 IVNLIKCTNLIPMDSNGFSDPFIKLYLKP 129 (224)
Q Consensus 101 ~v~i~~a~~L~~~~~~g~~dpyv~~~~~~ 129 (224)
.+..++.+++|........|.||++.+.-
T Consensus 304 ~~lrl~g~G~p~~~~~~~GDL~V~~~V~~ 332 (378)
T PRK14278 304 SVITLRGRGMPHLRSGGRGDLHAHVEVVV 332 (378)
T ss_pred cEEEECCCCCCCCCCCCCCCEEEEEEEEc
Confidence 34566788887544334689999998743
No 326
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=22.14 E-value=2.7e+02 Score=23.63 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=23.2
Q ss_pred EEEEEEeecCCCCCCCCCCCcEEEEEEecC
Q psy12137 101 IVNLIKCTNLIPMDSNGFSDPFIKLYLKPD 130 (224)
Q Consensus 101 ~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~ 130 (224)
.+..++.+++|.....+..|.||.+.+..+
T Consensus 304 ~~~rl~gkG~p~~~~~~~GDl~v~v~v~~P 333 (371)
T COG0484 304 EVFRLRGKGMPKLRSGGRGDLYVRVKVETP 333 (371)
T ss_pred cEEEEcCCCccccCCCCcCCEEEEEEEEcC
Confidence 456678888888777777899999998543
No 327
>PRK14281 chaperone protein DnaJ; Provisional
Probab=21.22 E-value=3.9e+02 Score=22.82 Aligned_cols=29 Identities=10% Similarity=0.174 Sum_probs=19.9
Q ss_pred EEEEEEeecCCCCCCCCCCCcEEEEEEec
Q psy12137 101 IVNLIKCTNLIPMDSNGFSDPFIKLYLKP 129 (224)
Q Consensus 101 ~v~i~~a~~L~~~~~~g~~dpyv~~~~~~ 129 (224)
.+..++++++|........|.||++.+.-
T Consensus 326 ~~~ri~g~G~P~~~~~~~GDL~V~~~V~~ 354 (397)
T PRK14281 326 TMLRIPGKGIGHLRGSGRGDQYVRVNVFV 354 (397)
T ss_pred cEEEEcCCCCCCCCCCCCCCEEEEEEEEc
Confidence 34456888887544334679999999853
No 328
>PRK14288 chaperone protein DnaJ; Provisional
Probab=20.81 E-value=4.7e+02 Score=22.10 Aligned_cols=83 Identities=13% Similarity=0.083 Sum_probs=46.2
Q ss_pred eEEEEEEeCCCCCC---ccceeEEeeccccCCCcccceeecccccccCCCcccccCcccceece-EEEEEEEEeCCCCEE
Q psy12137 25 SLHILVLDDDKYGH---DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHG-KIFLTLCFSTKKRAL 100 (224)
Q Consensus 25 ~l~i~v~d~d~~~~---~~lG~~~i~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~g-~l~i~~~~~~~~~~l 100 (224)
.+.|.|-.+..+.+ ++.-.+.|+|.+....-... +. ..-| .+.|.+. +....=
T Consensus 242 ~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~----v~-----------------tLdG~~l~i~i~--~~~~~g 298 (369)
T PRK14288 242 YLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIK----VP-----------------SLKGDELELKIP--RNARDR 298 (369)
T ss_pred EEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEE----ee-----------------cCCCCEEEEEeC--CCCCCC
Confidence 45666666666553 66677777777665332221 11 1223 2444332 222222
Q ss_pred EEEEEEeecCCCCCCCCCCCcEEEEEEecC
Q psy12137 101 IVNLIKCTNLIPMDSNGFSDPFIKLYLKPD 130 (224)
Q Consensus 101 ~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~ 130 (224)
.+..+.++++|..+.....|.||++.+.-+
T Consensus 299 ~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P 328 (369)
T PRK14288 299 QTFAFRNEGVKHPESSYRGSLIVELQVIYP 328 (369)
T ss_pred cEEEEcCCCCCCCCCCCCCCEEEEEEEECC
Confidence 455568889886543335799999998533
No 329
>PRK14290 chaperone protein DnaJ; Provisional
Probab=20.78 E-value=3.9e+02 Score=22.52 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=18.3
Q ss_pred EEEEEeecCCCCCCCCCCCcEEEEEEecC
Q psy12137 102 VNLIKCTNLIPMDSNGFSDPFIKLYLKPD 130 (224)
Q Consensus 102 v~i~~a~~L~~~~~~g~~dpyv~~~~~~~ 130 (224)
+..++.++++..+.....|.|+.+.+..+
T Consensus 311 ~iri~g~G~p~~~~~~~GDL~V~~~V~~P 339 (365)
T PRK14290 311 VLKIKGAGMPHLNGHGSGDLLVRINVEVP 339 (365)
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEEEECC
Confidence 44556677765433335799999988543
No 330
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=20.23 E-value=4.9e+02 Score=21.73 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=20.3
Q ss_pred EEEEEEeecCCCCCCCCCCCcEEEEEEecC
Q psy12137 101 IVNLIKCTNLIPMDSNGFSDPFIKLYLKPD 130 (224)
Q Consensus 101 ~v~i~~a~~L~~~~~~g~~dpyv~~~~~~~ 130 (224)
.+.++++++++........|.||++.+..+
T Consensus 307 ~~~~i~g~G~p~~~~~~~GDL~i~~~v~~P 336 (354)
T TIGR02349 307 TVFRLKGKGVPRLRGNGRGDLLVTVKVETP 336 (354)
T ss_pred cEEEECCCCcCCCCCCCCCCEEEEEEEECC
Confidence 455667888875443346799999988543
Done!