RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12137
(224 letters)
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 190 bits (483), Expect = 3e-60
Identities = 70/219 (31%), Positives = 114/219 (52%), Gaps = 13/219 (5%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
+T+NP F+E+ TF V ++L+ ++L + V D D++ HD +GE + P+N + +
Sbjct: 63 KTLNPVFNEQFTF-KVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEE 121
Query: 60 CLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFS 119
+L + +EE + G I +L + L V +++ NL MD G S
Sbjct: 122 WRDL----------QSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLS 171
Query: 120 DPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 178
DP++K++L + + +K KT +K TLNP +NE F+ E ++ K +V+TV D D
Sbjct: 172 DPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG 231
Query: 179 SNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 217
ND +G + + NS G LRHW DM+ P H L
Sbjct: 232 KNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTL 270
Score = 128 bits (322), Expect = 3e-36
Identities = 45/147 (30%), Positives = 78/147 (53%), Gaps = 6/147 (4%)
Query: 77 GEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKY 136
G E+ GK+ +L + + L+V +I+ L +D G SDP++K++L PD K+K+
Sbjct: 1 GSEKL---GKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-KKKKF 56
Query: 137 KTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKG 194
+T V KTLNP+FNE+F + +EL+ +TLV+ V+D D +D +G + + G
Sbjct: 57 ETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 116
Query: 195 DRLRHWVDMMKYPDHKHEGIHNLSIKP 221
W D+ + E + ++
Sbjct: 117 HVTEEWRDLQSAEKEEQEKLGDICFSL 143
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 181 bits (462), Expect = 4e-57
Identities = 61/220 (27%), Positives = 95/220 (43%), Gaps = 13/220 (5%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
+T+NP F+E F SV +L+ + LH V D D++ HD +G+ +
Sbjct: 64 KTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNL----LELAEQ 118
Query: 60 CLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFS 119
+ + G E G++ +LC+ L V +IK +NL MD GFS
Sbjct: 119 PPDRPLWRDIL-----EGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFS 173
Query: 120 DPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 178
DP++K L + + +K KT +K TLNP +NE + + L I V D D
Sbjct: 174 DPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIG 233
Query: 179 SNDYLGCLELCCNSKGDR-LRHWVDMMKYPDHKHEGIHNL 217
N+ +G + + HW +M+ P E H L
Sbjct: 234 HNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQL 273
Score = 124 bits (314), Expect = 5e-35
Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
G+I L + L+V +++ +L DSNGFSDP++K+YL PD K+K++T V KT
Sbjct: 7 GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPD-RKKKFQTKVHRKT 65
Query: 145 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMM 204
LNPIFNE F + EL+++ L +V+D D +D +G + L + +
Sbjct: 66 LNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLW 125
Query: 205 KY-----PDHKHEGIHNLSIK 220
+ + G N S+
Sbjct: 126 RDILEGGSEKADLGELNFSLC 146
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 162 bits (411), Expect = 5e-51
Identities = 73/148 (49%), Positives = 106/148 (71%), Gaps = 1/148 (0%)
Query: 71 REEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD 130
EE+V + + GKI ++L +ST++ LIV +I+C +L MD+NG+SDPF+KL+LKPD
Sbjct: 10 EEEQVERIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPD 69
Query: 131 LHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELC 189
+ K K+KT +K KTLNP FNEEF + K ++L+K++L I+VWD D GKSNDY+G +L
Sbjct: 70 MGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLG 129
Query: 190 CNSKGDRLRHWVDMMKYPDHKHEGIHNL 217
++KG+RL+HW + +K D K E H L
Sbjct: 130 ISAKGERLKHWYECLKNKDKKIERWHQL 157
Score = 45.5 bits (108), Expect = 2e-06
Identities = 16/50 (32%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLN 49
+T+NPEF+E+ + + +DL+ +SL I V D D +D++G + ++
Sbjct: 83 KTLNPEFNEEFFY-DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGIS 131
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 159 bits (404), Expect = 4e-50
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 83 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVK 141
G++ ++LC+ + L V ++K +L D +G SDP++K+ L + K KT VK
Sbjct: 15 GRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVK 74
Query: 142 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWV 201
T N +FNE F + L + ++ V D + G N+ +G L L ++G HW
Sbjct: 75 KCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWK 134
Query: 202 DMMKYPDHKHEGIHNLS 218
++ +P + H L
Sbjct: 135 EICDFPRRQIAKWHMLC 151
Score = 45.0 bits (107), Expect = 2e-06
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLN 49
T N F+E F + L S+ LVLD ++ + +G
Sbjct: 76 CTPNAVFNELFVF-DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT 124
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 158 bits (402), Expect = 6e-50
Identities = 52/134 (38%), Positives = 76/134 (56%), Gaps = 1/134 (0%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 143
G++ L+LC++ ++IVN+IK NL MD G SDP++K++L + K KT K +
Sbjct: 3 GELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKR 62
Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 203
LNPIFNE FA + +L + T++ITV DKD ND +G + L S ++HW DM
Sbjct: 63 NLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDM 122
Query: 204 MKYPDHKHEGIHNL 217
+ P H L
Sbjct: 123 IARPRQPVAQWHQL 136
Score = 45.8 bits (109), Expect = 9e-07
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLN 49
R +NP F+E F + L ++ I V+D DK D +G+
Sbjct: 62 RNLNPIFNESFAF-DIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWK 110
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 155 bits (394), Expect = 2e-48
Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 143
G I +L + L V +++ NL MD G SDP++K++L + + +K KT +K
Sbjct: 12 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 71
Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 203
TLNP +NE F+ E ++ K +V+TV D D ND +G + + NS G LRHW DM
Sbjct: 72 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 131
Query: 204 MKYPDHKHEGIHNL 217
+ P H L
Sbjct: 132 LANPRRPIAQWHTL 145
Score = 43.6 bits (103), Expect = 7e-06
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLN 49
T+NP ++E +F V + + + VLD DK G +D +G+ N
Sbjct: 71 NTLNPYYNESFSF-EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN 119
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle,
glycoprotein, lipoprotein, membrane, metal- binding,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Length = 143
Score = 142 bits (360), Expect = 1e-43
Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 3/137 (2%)
Query: 69 VPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLK 128
+ + + GK+ +L + + L+V +I+ L +D G SDP++K++L
Sbjct: 5 IGGGGGGILDSMVEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLL 64
Query: 129 PDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CL 186
PD K+K++T V KTLNP+FNE+F + +EL +TLV+ V+D D +D +G +
Sbjct: 65 PD-KKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKV 123
Query: 187 ELCCNSKGDRLRHWVDM 203
+ G W D+
Sbjct: 124 PMNTVDFGHVTEEWRDL 140
Score = 55.1 bits (133), Expect = 4e-10
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 51
+T+NP F+E+ TF V ++L ++L + V D D++ HD +GE + P+N +
Sbjct: 78 KTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 141 bits (358), Expect = 3e-43
Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 69 VPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLK 128
+ E +E + GK+ +L + + L+V +I+ L +D G SDP++K++L
Sbjct: 13 LDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLL 72
Query: 129 PDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CL 186
PD K+K++T V KTLNP+FNE+F + +EL +TLV+ V+D D +D +G +
Sbjct: 73 PD-KKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKV 131
Query: 187 ELCCNSKGDRLRHWVDMM 204
+ G W D+
Sbjct: 132 PMNTVDFGHVTEEWRDLQ 149
Score = 54.7 bits (132), Expect = 7e-10
Identities = 19/52 (36%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 51
+T+NP F+E+ TF V ++L ++L + V D D++ HD +GE + P+N +
Sbjct: 86 KTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 136
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 132 bits (334), Expect = 1e-39
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 5/132 (3%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWK 143
G+I++ + LIV + NL+PMD NG SDP++KL L PD K KT
Sbjct: 20 GRIYIQAHI--DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC 77
Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS-KGDRLRHWVD 202
+LNP +NE F + K ++ + L + +WD D ND++G L + + + W
Sbjct: 78 SLNPEWNETFRFQLKESDKDR-RLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFK 136
Query: 203 MMKYPDHKHEGI 214
++ + ++ +
Sbjct: 137 LLSQEEGEYFNV 148
Score = 51.2 bits (123), Expect = 1e-08
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 53
++NPE++E F + E+D + L + + D D +DF+G F ++ L+
Sbjct: 77 CSLNPEWNETFRF-QLKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQK 128
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 130 bits (329), Expect = 8e-39
Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKR-KYKTGVKW 142
G+I +L + + ++L+V++ +C L D + S+P++K YL PD ++ K KT +K
Sbjct: 10 GRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR 69
Query: 143 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHW 200
T+NP+++E E + L+++TL +VW N +LG E+ +S +L H
Sbjct: 70 DTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHC 129
Query: 201 VDMMKYPDHKHEGIH 215
+ + + EG H
Sbjct: 130 LPLHGKISAESEGHH 144
Score = 55.4 bits (134), Expect = 3e-10
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
T+NP + E L + + E+ L+ ++L V ++G + FLGEA ++ + D
Sbjct: 70 DTVNPLYDETLRY-EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDH 128
Query: 60 CLNLCKHYPVPREEE 74
CL L E
Sbjct: 129 CLPLHGKISAESEGH 143
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 129 bits (326), Expect = 1e-38
Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 6/129 (4%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGF-SDPFIKLYLKPDLHKRKYKTGVKWK 143
G +F +L ++ +++A +VN+ + L MD SDP+IK+ + P+ K K KT V K
Sbjct: 9 GTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE-KKHKVKTRVLRK 67
Query: 144 TLNPIFNEEFAIETK-ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS---KGDRLRH 199
TL+P F+E F T++ + L T+ D +D +G + + + ++
Sbjct: 68 TLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLM 127
Query: 200 WVDMMKYPD 208
+++ P
Sbjct: 128 NREIISGPS 136
Score = 62.4 bits (152), Expect = 9e-13
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 51
+T++P F E TFY + T + +LH +L D++ D +GE PL+ +
Sbjct: 67 KTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 129 bits (326), Expect = 2e-38
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWK 143
G+I LT+ S+++ LIV + C NLI +G SDP++++YL PD + + KT V K
Sbjct: 11 GQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKK 69
Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKD--YGKSNDYLGC--LELCCNSKGDRLRH 199
TLNP+F++ F + E+ ++TL + V + K LG + L
Sbjct: 70 TLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQ 129
Query: 200 WVDMMKYPDHK 210
W D+ +
Sbjct: 130 WYDLTEDSGPS 140
Score = 49.7 bits (119), Expect = 4e-08
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG---HDFLGEARFPLNRL 51
+T+NP F + F SVS ++ ++L + V + + LG+ L
Sbjct: 69 KTLNPVFDQSFDF-SVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASE 121
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting
molecule, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 141
Score = 127 bits (320), Expect = 1e-37
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 5/134 (3%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWK 143
G++ + L F LIV ++ +L + +P++K+Y PD K K +T K
Sbjct: 8 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 67
Query: 144 TLNPIFNEEFAIET-KITELSKQTLVITVWDKD--YGKSNDYLGCLELCCNS-KGDRLRH 199
TL P +N+ F E ++ L IT+WD+ + +++LG + + + D H
Sbjct: 68 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 127
Query: 200 WVDMMKYPDHKHEG 213
W + + G
Sbjct: 128 WYKLQTHDSGPSSG 141
Score = 55.8 bits (135), Expect = 2e-10
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH---DFLGEARFPLNRL 51
+T+ P++++ + V + + L I + D + +FLGE L
Sbjct: 67 KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 120
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 126 bits (319), Expect = 2e-37
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
G+I ++ ++ ++ L V ++K L D +G SDPF+K+YL PD K K +T VK K
Sbjct: 13 GRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPD-KKHKLETKVKRKN 71
Query: 145 LNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWV 201
LNP +NE F E ++ ++ L + V D D ND +G + L W
Sbjct: 72 LNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWK 131
Query: 202 DM 203
D+
Sbjct: 132 DL 133
Score = 61.2 bits (149), Expect = 3e-12
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
+ +NP ++E F + + L++ VLD D++ +D +GE PLN++ +
Sbjct: 70 KNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTF 129
Query: 60 CLNLCKHYP 68
+L P
Sbjct: 130 WKDLKPSGP 138
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 126 bits (318), Expect = 2e-37
Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 5/121 (4%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
K+ L + +K L V ++ + +G D +++ + + +T +K +
Sbjct: 13 PKLHYCLDYDCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQ 69
Query: 145 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVD 202
L+ + E + EL TL +T+ D + G L L S W +
Sbjct: 70 LHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGE 129
Query: 203 M 203
+
Sbjct: 130 L 130
Score = 55.4 bits (134), Expect = 3e-10
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 51
R ++ + E L ++E +L +L + + D++ H GE R L+
Sbjct: 68 RQLHTTWEEGLVL-PLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGT 118
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 126 bits (318), Expect = 3e-37
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 5/133 (3%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWK 143
G+I+L + +K L V + NLIPMD NG SDP++KL L PD K KT
Sbjct: 5 GRIYLKAEVTDEK--LHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRS 62
Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS-KGDRLRHWVD 202
TLNP +NE F + K + L + +WD D ND++G L + W
Sbjct: 63 TLNPQWNESFTFKLK-PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYK 121
Query: 203 MMKYPDHKHEGIH 215
++ + ++ +
Sbjct: 122 LLNQEEGEYYNVP 134
Score = 47.7 bits (114), Expect = 2e-07
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 53
T+NP+++E TF + +D + L + + D D+ +DF+G F ++ L
Sbjct: 62 STLNPQWNESFTF-KLKPSDKD-RRLSVEIWDWDRTTRNDFMGSLSFGVSELMK 113
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 125 bits (317), Expect = 4e-37
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 15/129 (11%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD----------LHKR 134
G+I L + + LI+++++ NL+P D+NG+SDPF+K+YL P +
Sbjct: 7 GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 135 KYKTGVKWKTLNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLG--CLELCCN 191
K +T K+LNP +N+ ++ + +L K+TL +TVWD D SND+LG ++L
Sbjct: 65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124
Query: 192 SKGDRLRHW 200
S D W
Sbjct: 125 SHLDNTPRW 133
Score = 59.0 bits (143), Expect = 2e-11
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 53
+++NPE+++ + + S+S L ++L + V D D++ +DFLGE L+
Sbjct: 73 KSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSH 126
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 125 bits (317), Expect = 6e-37
Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 5/133 (3%)
Query: 77 GEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-- 134
E E +I + L + K + + +I+ +NL + I++ + P
Sbjct: 22 DESEAVGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTC 81
Query: 135 KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELC---CN 191
++T + +FNE F + L ++TL + V D + LG ++
Sbjct: 82 LFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVC 141
Query: 192 SKGDRLRHWVDMM 204
G+R W +++
Sbjct: 142 RSGERSTRWYNLL 154
Score = 55.5 bits (134), Expect = 4e-10
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 51
+ F+E S+S L ++L + V D+ + LG A+ L +
Sbjct: 90 ASDTLVFNEVFWV-SMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEV 140
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 124 bits (312), Expect = 2e-36
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 2/134 (1%)
Query: 72 EEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL 131
E + ++ G + +L + L +I+ L PMDSNG +DP++KL+L P
Sbjct: 3 EANSYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGA 62
Query: 132 HK-RKYKTGVKWKTLNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLGCLELC 189
K K +T T NP++NE ++ ++TL I+V D+D N+++G
Sbjct: 63 SKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFS 122
Query: 190 CNSKGDRLRHWVDM 203
R ++
Sbjct: 123 LKKLKANQRKNFNI 136
Score = 67.0 bits (164), Expect = 2e-14
Identities = 22/66 (33%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
T NP ++E L ++ ++E D+ ++L I V D+DK+G ++F+GE RF L +L+ + ++
Sbjct: 75 NTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNF 134
Query: 60 CLNLCK 65
+ L +
Sbjct: 135 NICLER 140
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 120 bits (303), Expect = 6e-35
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPM-------DSNGFSDPFIKLYLKPDLHKRKYK 137
G + + + L V +I+ +L P S+P++K+ L PD K +
Sbjct: 13 GMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPD-QKNSKQ 71
Query: 138 TGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGD 195
TGVK KT P+F E + E E ++TL++TV D D + +G + LC
Sbjct: 72 TGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVK 131
Query: 196 RLRHWVDM 203
W +
Sbjct: 132 GGHWWKAL 139
Score = 55.9 bits (135), Expect = 2e-10
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 51
+T P F E+ TF + + ++L + V+D DK+ H +G+ PL +
Sbjct: 77 KTQKPVFEERYTF-EIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEV 127
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain,
neurotransmitter release, transport protein; 1.41A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 129
Score = 119 bits (301), Expect = 7e-35
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVKWK 143
G++ + L F LIV ++ +L + +P++K+Y PD K K +T K
Sbjct: 5 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 64
Query: 144 TLNPIFNEEFAIET-KITELSKQTLVITVWDKD--YGKSNDYLGCLELC-CNSKGDRLRH 199
TL P +N+ F E ++ L IT+WD+ + +++LG + + + D H
Sbjct: 65 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 124
Query: 200 WVDM 203
W +
Sbjct: 125 WYKL 128
Score = 56.1 bits (136), Expect = 1e-10
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH---DFLGEARFPLNRL 51
+T+ P++++ + V + + L I + D + +FLGE L
Sbjct: 64 KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 117
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 115 bits (289), Expect = 1e-32
Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 15/137 (10%)
Query: 83 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVK 141
G L L + R L++++I+ LI G DP++K+ L P+ + KT
Sbjct: 12 VQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTV 70
Query: 142 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKD-YGKSNDYLGCLELCCNSKGDRLRHW 200
+P F+E F + + K L++TVW++ + + +GC+
Sbjct: 71 PDCRDPAFHEHFFFPVQEEDDQK-RLLVTVWNRASQSRQSGLIGCMSFG----------- 118
Query: 201 VDMMKYPDHKHEGIHNL 217
V + PD + G + L
Sbjct: 119 VKSLLTPDKEISGWYYL 135
Score = 48.1 bits (115), Expect = 2e-07
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG--HDFLGEARFPLNRL 51
+P FHE F V E D + L + V + +G F + L
Sbjct: 72 DCRDPAFHEHFFF-PVQEEDDQ-KRLLVTVWNRASQSRQSGLIGCMSFGVKSL 122
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 108 bits (273), Expect = 1e-30
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 143
G + L++ + + L + ++ +L+ D +P++K YL PD HK K KT + K
Sbjct: 9 GAVKLSVSY--RNGTLFIMVMHIKDLVTEDGAD-PNPYVKTYLLPDTHKTSKRKTKISRK 65
Query: 144 TLNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHW 200
T NP FNE L ++ L ++V + + N +LG + L W
Sbjct: 66 TRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKW 125
Query: 201 VDM 203
+
Sbjct: 126 YQL 128
Score = 58.1 bits (141), Expect = 3e-11
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 51
+T NP F+E L + S+ L + L + VL + + FLG PL
Sbjct: 65 KTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDF 116
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 105 bits (265), Expect = 3e-29
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 85 GKIFLTLCFSTKK-RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH--KRKYKTGVK 141
L + R + V +I L D G SDP++++ L ++ +T
Sbjct: 6 AVEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTI 65
Query: 142 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 188
K+LNP +NEE + L+ V+D++ +D+LG +++
Sbjct: 66 KKSLNPKWNEEILFRVHPQQ---HRLLFEVFDENRLTRDDFLGQVDV 109
Score = 54.4 bits (131), Expect = 9e-10
Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 12/95 (12%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
+++NP+++E++ F + L V D+++ DFLG+ PL L R
Sbjct: 67 KSLNPKWNEEILFRVHPQQ----HRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLE 122
Query: 60 CLNLCKHYPV-PREEEVWGEEECWQHGKIFLTLCF 93
K + + PR + G + L + +
Sbjct: 123 RPYTFKDFVLHPRSHKSRV------KGYLRLKMTY 151
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 105 bits (263), Expect = 9e-29
Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 10/121 (8%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKR-KYKTGVKW 142
G I + + KK L V +I+ +L S P++K+YL + K KT +
Sbjct: 19 GDIQIGMED--KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIAR 76
Query: 143 KTLNPIFNEEFAIETKITELSKQTLVITVW-DKDYGKSNDYLGCLE--LCCNSKGDRLRH 199
KTL+P++ + + + L + VW D ++G + L +
Sbjct: 77 KTLDPLYQQSLVFD---ESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIG 133
Query: 200 W 200
W
Sbjct: 134 W 134
Score = 44.4 bits (105), Expect = 4e-06
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDD-DKYG-HDFLGEARFPLNRLRP 53
+T++P + + L F + + L ++V D + F+G A+ L L
Sbjct: 77 KTLDPLYQQSLVF----DESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDL 127
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 99 bits (249), Expect = 1e-26
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 11/121 (9%)
Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH--KRKYKTGVKWKTLNPIFNEEFAIET 157
+ V +I L D G SDP++++ L + +T K+LNP +NEE
Sbjct: 10 VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
Query: 158 KITELSKQTLVITVWDKDYGKSNDYLGCLEL------CCNSKGDRLRHWVDMMKYPDHKH 211
++ V+D++ +D+LG +++ N + +R + D + +P
Sbjct: 70 LPQR---HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHK 126
Query: 212 E 212
Sbjct: 127 S 127
Score = 61.4 bits (149), Expect = 4e-12
Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 10/111 (9%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
+++NP+++E++ F + + + V D+++ DFLG+ PL L R
Sbjct: 55 KSLNPKWNEEILFRVLPQR----HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRME 110
Query: 60 CLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNL 110
K + + G + L + + K + N + L
Sbjct: 111 RPYTFKDFVLHPRSHKSRV-----KGYLRLKMTYLPKNGSEDENADQAEEL 156
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 96.6 bits (241), Expect = 8e-26
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
L V ++K +L+ D +G SDPF L L D + +T +K LNP +N+ F K
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGND----RLQTHTVYKNLNPEWNKVFTFPIKD 70
Query: 160 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK 210
L +TV+D+D K D+LG + + S D + + +
Sbjct: 71 IH---DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQ 118
Score = 48.8 bits (117), Expect = 8e-08
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
+ +NPE+++ TF + + L + V D+D DFLG+ PL +R
Sbjct: 54 KNLNPEWNKVFTF-PIKDIH---DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCY 109
Query: 60 CLNLCKHYPVPR 71
L +
Sbjct: 110 VLKNKDLEQAFK 121
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy,
cardiomyopathy, membrane fusion, dystrophin, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 93.2 bits (232), Expect = 2e-24
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 8/116 (6%)
Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
L V + +N+ P G DP + + K + K KT LNP++NE + +
Sbjct: 9 LRVIVESASNI-PKTKFGKPDPIVSVIFKDE----KKKTKKVDNELNPVWNEILEFDLRG 63
Query: 160 TEL-SKQTLVITVWDKDYGKSNDYLGC--LELCCNSKGDRLRHWVDMMKYPDHKHE 212
L +L I V D + N +G + L + ++ + K +
Sbjct: 64 IPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQ 119
Score = 54.3 bits (131), Expect = 9e-10
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
+NP ++E L F SL I+V D + G + +G A L L SR L
Sbjct: 47 NELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSL 106
Query: 60 CLNLCK 65
L
Sbjct: 107 PYKLIS 112
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 92.0 bits (229), Expect = 4e-24
Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 9/108 (8%)
Query: 100 LIVNLIKCTNLI---PMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE 156
V +++ T + D DP+++L++ + +T +NP++NE F
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTT-PDSRKRTRHFNNDINPVWNETFEF- 62
Query: 157 TKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVD 202
+ + L IT+ D +Y ++ LG + G++
Sbjct: 63 -ILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFI 108
Score = 54.7 bits (132), Expect = 4e-10
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLC 60
INP ++E F L I ++D + + LG A F ++ ++ +++
Sbjct: 50 NDINPVWNETFEF---ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVP 106
Query: 61 LNL 63
Sbjct: 107 FIF 109
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane
associate, lipid binding PROT; 1.96A {Homo sapiens} PDB:
2jqz_A
Length = 132
Score = 89.7 bits (223), Expect = 3e-23
Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 9/121 (7%)
Query: 95 TKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFA 154
++ + + ++ NL D DPF K+ + + + T TL+P +N+ +
Sbjct: 2 SEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS--GQCHSTDTVKNTLDPKWNQHYD 59
Query: 155 IETKITELSKQTLVITVWDKDYGKSND---YLGCLELCCNSKGDRLRHWVDMMKYPDHKH 211
+ ++ I+VW+ +LGC+ L N+ +
Sbjct: 60 LYVG----KTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNP 115
Query: 212 E 212
Sbjct: 116 S 116
Score = 40.4 bits (95), Expect = 6e-05
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 19/96 (19%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD----FLGEARFPLNRLRPH-I 55
T++P++++ Y S+ I V + K FLG R N +
Sbjct: 48 NTLDPKWNQHYDLYVGKT-----DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKD 102
Query: 56 SRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTL 91
+ L+LCK P + G+I ++L
Sbjct: 103 TGYQRLDLCKLNP---------SDTDAVRGQIVVSL 129
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 85.5 bits (212), Expect = 2e-21
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
L V L+ L D DP+++L + + + P +NE F +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQ---DQKSNVAEGMGTTPEWNETFIF--TV 66
Query: 160 TELSKQTLVITVWDKDYGKSNDYLGCLEL 188
+E + + L ++DKD G +D +G +
Sbjct: 67 SEGTTE-LKAKIFDKDVGTEDDAVGEATI 94
Score = 47.7 bits (114), Expect = 2e-07
Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 18/94 (19%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
PE++E F +VSE L + D D D +GEA PL + S
Sbjct: 52 MGTTPEWNETFIF-TVSEGT---TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPP 107
Query: 60 CLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 93
Y V ++EE G+I++ L F
Sbjct: 108 TA-----YNVVKDEEY--------KGEIWVALSF 128
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 84.5 bits (209), Expect = 4e-21
Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 18/112 (16%)
Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
+ + ++ L D G SDP++ + + K K +T + LNP++ E F E
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVG----KTKKRTKTIYGNLNPVWEENFHFECH- 73
Query: 160 TELSKQTLVITVWDKDYGK-----------SNDYLGCLELCCNSKGDRLRHW 200
S + + V D+D S+D+LG + + + W
Sbjct: 74 --NSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVW 123
Score = 39.0 bits (91), Expect = 3e-04
Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 39/113 (34%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG------------HDFLGEARFPL 48
+NP + E F + +D + + VLD+D DFLG+ +
Sbjct: 58 GNLNPVWEENFHFECHNSSD----RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEV 113
Query: 49 NRLRPHISRDLCLNLCKHYPVPREEEVW-----GEEECWQHGKIFLTLCFSTK 96
L E +VW ++ G I L + K
Sbjct: 114 RTL------------------SGEMDVWYNLDKRTDKSAVSGAIRLHISVEIK 148
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 81.1 bits (200), Expect = 2e-19
Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 8/108 (7%)
Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
L + +I + P++++ + + KT T +P + + +
Sbjct: 38 LQITVISAKLKENKKNWFGPSPYVEVTVD----GQSKKTEKCNNTNSPKWKQPLTVIVT- 92
Query: 160 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYP 207
L VW KS+ LG L ++ +
Sbjct: 93 ---PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVT 137
Score = 40.2 bits (94), Expect = 1e-04
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 6/61 (9%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
T +P++ + LT V+ LH V LG A + + L
Sbjct: 77 NTNSPKWKQPLTV-IVTPVS----KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKL 131
Query: 60 C 60
Sbjct: 132 E 132
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 72.7 bits (178), Expect = 2e-16
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 17/99 (17%)
Query: 100 LIVNLIKCTNLIPMD----------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIF 149
L V + + L P + DP++ + + R +T K KT P +
Sbjct: 31 LRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVD---QVRVGQTSTKQKTNKPTY 87
Query: 150 NEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 188
NEEF L + V+ + + ++ L
Sbjct: 88 NEEFCANVT----DGGHLELAVFHETPLGYDHFVANCTL 122
Score = 45.3 bits (107), Expect = 2e-06
Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 20/95 (21%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
+T P ++E+ +V++ L + V + G F+
Sbjct: 81 KTNKPTYNEEFCA-NVTDG----GHLELAVFHETPLGYDHFVANCTLQFQ---------- 125
Query: 60 CLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS 94
L + E W + E GK+F+ + +
Sbjct: 126 --ELLRTTGASDTFEGWVDLE--PEGKVFVVITLT 156
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 76.5 bits (187), Expect = 2e-16
Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 7/120 (5%)
Query: 100 LIVNLIKCTNLI---PMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE 156
V +++ T + D DP+++L++ + +T +NP++NE F
Sbjct: 20 FTVVVLRATKVTKGAFGDMLDTPDPYVELFI-STTPDSRKRTRHFNNDINPVWNETFEF- 77
Query: 157 TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHN 216
+ + L IT+ D +Y ++ LG +S + V + + +
Sbjct: 78 -ILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMS 135
Score = 43.4 bits (101), Expect = 4e-05
Identities = 18/127 (14%), Positives = 40/127 (31%), Gaps = 6/127 (4%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLC 60
INP ++E F L I ++D + + LG A F ++ ++ +++
Sbjct: 65 NDINPVWNETFEF---ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVP 121
Query: 61 LNLCKHYPVPREEEVWGEEECWQHGKIFLTLC---FSTKKRALIVNLIKCTNLIPMDSNG 117
+ + E + + L F +++ I +K
Sbjct: 122 FIFNQVTEMVLEMSLEVCSCPDLRFSMALCDQEKTFRQQRKEHIRESMKKLLGPKNSEGL 181
Query: 118 FSDPFIK 124
S +
Sbjct: 182 HSARDVP 188
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 69.9 bits (171), Expect = 1e-15
Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 22/118 (18%)
Query: 100 LIVNLIKCTNLIPMD-----------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPI 148
L + + + +L P DP+I L + R +T K KT +P
Sbjct: 8 LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD---DSRIGQTATKQKTNSPA 64
Query: 149 FNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS----KGDRLRHWVD 202
+++EF + + + + + V+ +D++ + W+D
Sbjct: 65 WHDEFVTDVC----NGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWID 118
Score = 42.5 bits (100), Expect = 1e-05
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 22/95 (23%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
+T +P +H++ V + + + V D G DF+ L + SR
Sbjct: 59 KTNSPAWHDEFVT-DVCNG----RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHF 113
Query: 60 CLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS 94
E W + E GK+++ + S
Sbjct: 114 --------------EDWIDLE--PEGKVYVIIDLS 132
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 64.9 bits (157), Expect = 2e-12
Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 6/125 (4%)
Query: 60 CLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFS 119
C C+ + E L+V+ + +L +
Sbjct: 356 CSRPCRSGQHKSSHDSCQCECQDSKVTNQDCCPRQRGLAHLVVSNFRAEHLWGDYT---- 411
Query: 120 DPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 179
YLK ++++TGV W NP + ++ E + + L + VWD DYG
Sbjct: 412 -TATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFEN-VLLSTGGPLRVQVWDADYGWD 469
Query: 180 NDYLG 184
+D LG
Sbjct: 470 DDLLG 474
Score = 36.4 bits (83), Expect = 0.005
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPL 48
NP + +K+ F +V + L + V D D D LG
Sbjct: 434 NNNNPRWTDKMDFENVLLSTG--GPLRVQVWDADYGWDDDLLGSCDRSP 480
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter
release, RIM, MUNC13 domains, exocytosis, metal-binding;
1.44A {Rattus norvegicus} SCOP: b.7.1.1
Length = 131
Score = 49.6 bits (118), Expect = 4e-08
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
L V + K + + ++ L ++ K T + P + ++F E I
Sbjct: 7 LCVGVKKAKFDGAQEK---FNTYVTLKVQ----NVKSTTIAV-RGSQPSWEQDFMFE--I 56
Query: 160 TELSKQTLVITVWDKDYGKSNDYLGCLEL 188
L L + VW+K + +G + +
Sbjct: 57 NRLDLG-LTVEVWNKGLIW-DTMVGTVWI 83
Score = 36.5 bits (84), Expect = 0.002
Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 4/56 (7%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHIS 56
R P + + F L L + V + +G PL +R
Sbjct: 42 RGSQPSWEQDFMF---EINRLD-LGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNE 93
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc
finger, synapto phorbol-ester binding; 1.78A {Rattus
norvegicus} SCOP: b.7.1.1
Length = 167
Score = 40.0 bits (93), Expect = 2e-04
Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 25/114 (21%)
Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
L V + K + + ++ L ++ + T + + P + ++F E
Sbjct: 16 LCVGVKKAKFDGAQEK---FNTYVTLKVQ----NVESTT-IAVRGSQPSWEQDFMFEINR 67
Query: 160 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEG 213
+L L + VW+K + +G W+ + EG
Sbjct: 68 LDLG---LTVEVWNKGLIW-DTMVG-------------TVWIPLRTIRQSNEEG 104
Score = 32.7 bits (74), Expect = 0.041
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLR 52
R P + + F ++ DL L + V + +G PL +R
Sbjct: 51 RGSQPSWEQDFMF-EINRLDLGLT---VEVWNKGLIWDTMVGTVWIPLRTIR 98
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 40.3 bits (93), Expect = 4e-04
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 10/108 (9%)
Query: 96 KKRALIVNLIKCTNLIPMDSNGFS--DPFIKLYL---KPDLHKRKYKTGVKWKTLNPIFN 150
+ L V +I L ++ N S DP + + + D R+ + NP ++
Sbjct: 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAV-ITNNGFNPRWD 553
Query: 151 EEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDR 196
EF E + +L+ + V D D ND++G + +G R
Sbjct: 554 MEFEFEVTVPDLA--LVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYR 599
Score = 34.9 bits (79), Expect = 0.017
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 2 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 53
NP + + F V+ DL+L + +V D D DF+G++ P N L+
Sbjct: 547 GFNPRWDMEFEF-EVTVPDLAL--VRFMVEDYDSSSKNDFIGQSTIPWNSLKQ 596
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane,
phosphoprotein, SH3-binding, signaling protein; 3.00A
{Rattus norvegicus}
Length = 483
Score = 39.2 bits (90), Expect = 6e-04
Identities = 17/119 (14%), Positives = 32/119 (26%), Gaps = 8/119 (6%)
Query: 98 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIET 157
L + +I+ L P + +L L L+ R + E F
Sbjct: 11 NVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNN 65
Query: 158 KITELSKQTLVITVWDKDYGKSND-YLGCLE--LCCNSKGDRLRHWVDMMKYPDHKHEG 213
+ + + DK K Y+G + + + W + G
Sbjct: 66 LPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSG 124
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 38.1 bits (88), Expect = 0.002
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 94 STKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEF 153
++ L+V++I+ T L NG S+P+ ++ + + T TLNP +N F
Sbjct: 383 TSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYT----TRTIQDTLNPKWN--F 436
Query: 154 AIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 188
+ I +L + L +T++D+D +D+LG E+
Sbjct: 437 NCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEI 471
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein
binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Length = 126
Score = 33.2 bits (75), Expect = 0.023
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 8/90 (8%)
Query: 119 SDPFIKLYLKPDLHKRKYKTGV-KWKTLNPIFNEEFAIETKITELSKQTLVITVWDK-DY 176
+ PF + +K L + KT V K T+ P + F + + I + +
Sbjct: 27 NQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIY----EGRVIQIVLMRAAEE 82
Query: 177 GKSNDYLGCLEL--CCNSKGDRLRHWVDMM 204
S +G L C + W+D+
Sbjct: 83 PVSEVTVGVSVLAERCKKNNGKAEFWLDLQ 112
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.044
Identities = 32/279 (11%), Positives = 70/279 (25%), Gaps = 100/279 (35%)
Query: 11 LTFYSVSETDL---SLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHY 67
L + + + LQ L + + D + ++ ++ + R L K
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR-----LLKSK 241
Query: 68 PVPRE----EEVWGEEECWQ----HGKIFLT---------LCFSTKKRALIVN------- 103
P V + W KI LT L +T + +
Sbjct: 242 PYENCLLVLLNVQ-NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 104 ------LIKCTNLIPMD--------------------SNGFS--DPF-----------IK 124
L+K + P D +G + D + I+
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 125 L---YLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSND 181
L+P +++ + +F I L + +W +D
Sbjct: 361 SSLNVLEPAEYRKMFDRLS-------VFPP----SAHIPT---ILLSL-IWFDV--IKSD 403
Query: 182 YLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 220
+ + + + I ++ ++
Sbjct: 404 VMVVVNKLHK-YSLVEKQPKESTIS-------IPSIYLE 434
Score = 33.3 bits (75), Expect = 0.063
Identities = 32/202 (15%), Positives = 58/202 (28%), Gaps = 62/202 (30%)
Query: 30 VLDDDKYGHDFLGEA-----RFPLNRLRPHIS-RDLCLN---LCKHYPVPREEEVWGEEE 80
V + + + FL R P R +I RD N + Y V R +
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL---- 138
Query: 81 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLY-------------- 126
K+ ++AL L P + +
Sbjct: 139 -----KL---------RQAL-------LELRPA-------KNVLIDGVLGSGKTWVALDV 170
Query: 127 LKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCL 186
+ K + W L + E +E Q L+ + D ++ +D+ +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEML------QKLLYQI-DPNWTSRSDHSSNI 223
Query: 187 ELCCNSKGDRLRHWVDMMKYPD 208
+L +S LR + Y +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYEN 245
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 33.4 bits (75), Expect = 0.062
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 2 TINPEFHEK-LTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRP 53
+INP + E+ F + +L+ L + V+++ + FLG P+N L
Sbjct: 724 SINPVWKEEPFVFEKILMPELAS--LRVAVMEEG---NKFLGHRIIPINALNS 771
Score = 26.9 bits (58), Expect = 6.6
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 123 IKLYLKPDLHKRKYKTGVKWK--TLNPIFNEEFAIETKITELSKQTLVITVWDKD 175
++L+ P KR+Y+T + ++NP++ EE + KI +L + V ++
Sbjct: 701 VELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG 755
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 31.1 bits (69), Expect = 0.29
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 2 TINPEFHEK-LTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRP 53
+ NP + E+ F V L+ L I ++ F+G P++ +R
Sbjct: 770 SFNPVWDEEPFDFPKVVLPTLAS--LRIAAFEEG---GKFVGHRILPVSAIRS 817
Score = 29.6 bits (65), Expect = 1.1
Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 123 IKLYLKPDLHKRKYKTG-VKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 175
+ ++ P +RKY+T + + NP+++EE K+ + +L I +++
Sbjct: 748 VDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG 801
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 29.9 bits (66), Expect = 0.68
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 4 NPEFHEKL-TFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRP 53
+P + EK+ F V DL++ + I+V +++ F+G PL+ ++P
Sbjct: 698 DPYYDEKVFVFKKVVLPDLAV--VRIIVSEEN---GKFIGHRVMPLDGIKP 743
Score = 28.0 bits (61), Expect = 3.3
Identities = 19/123 (15%), Positives = 48/123 (39%), Gaps = 14/123 (11%)
Query: 82 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKL---YLKPDLHKRKYKT 138
+ K F ST + + S+ ++++ L D ++K+KT
Sbjct: 630 RKLDKRFDPFTESTVDGVVAGTIEIKIISAQFLSDKQISSYVEVEMYGLPTDTVRKKFKT 689
Query: 139 G-VKWKTLNPIFNEE--FAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSK 193
++ ++P ++E+ + + +L+ + I V +++ ++G + L
Sbjct: 690 KIIENNGMDPYYDEKVFVFKKVVLPDLA--VVRIIVSEEN----GKFIGHRVMPLDGIKP 743
Query: 194 GDR 196
G R
Sbjct: 744 GYR 746
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich,
phosphotyrosine binding, TCR, T-cell, diacylglycerol,
phorbol ester, structural genomics; NMR {Homo sapiens}
Length = 138
Score = 28.5 bits (63), Expect = 0.92
Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 8/90 (8%)
Query: 119 SDPFIKLYLKPDLHKRKYKTGV-KWKTLNPIFNEEFAIETKITELSKQTLVITVWDK-DY 176
+P+ + +K + + + K T+ P ++ F + + I V K
Sbjct: 32 VNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHIN----KGRVMQIIVKGKNVD 87
Query: 177 GKSNDYLGCLELC--CNSKGDRLRHWVDMM 204
S + L C + W+++
Sbjct: 88 LISETTVELYSLAERCRKNNGKTEIWLELK 117
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit,
P50 subunit, human, DNA replication, DNA-directed DNA
polymerase; HET: DNA; 3.00A {Homo sapiens}
Length = 476
Score = 26.6 bits (58), Expect = 7.1
Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 4/99 (4%)
Query: 30 VLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFL 89
L + + + L ++RP + + V + E+ EE+C G +F
Sbjct: 47 RLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPEEKCCVVGTLF- 105
Query: 90 TLCFSTKKRALIVNLIKCTNLIPMDSNG-FSDPFIKLYL 127
+ +++ + + NL+P + P +L L
Sbjct: 106 --KAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVL 142
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor,
glucose dehydrogenas structural genomics, NPPSFA; 1.90A
{Thermus thermophilus}
Length = 352
Score = 26.6 bits (59), Expect = 7.5
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 11 LTFYSVSE--TDLSLQSLHILVLDDDKYGHDFLGEARFP--LNRLR 52
L F+ L Q+L LVL+ ++ L RLR
Sbjct: 273 LAFFRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLR 318
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe
structural genomics, PSI-2, protein structure
initiative; 2.00A {Corynebacterium diphtheriae}
Length = 422
Score = 26.5 bits (59), Expect = 7.6
Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 20 DLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRD 58
++S + ++ D+ Y H E N + +
Sbjct: 206 EMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAG 245
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.448
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,550,828
Number of extensions: 203898
Number of successful extensions: 593
Number of sequences better than 10.0: 1
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 99
Length of query: 224
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 134
Effective length of database: 4,188,903
Effective search space: 561313002
Effective search space used: 561313002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.0 bits)