RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12137
(224 letters)
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 138
Score = 111 bits (278), Expect = 7e-32
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 143
G++ ++LC+ + L V ++K +L D +G SDP++K+ L + K KT VK
Sbjct: 2 GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC 61
Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 203
T N +FNE F + L + ++ V D + G N+ +G L L ++G HW ++
Sbjct: 62 TPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEI 121
Query: 204 MKYPDHKHEGIHNL 217
+P + H L
Sbjct: 122 CDFPRRQIAKWHML 135
Score = 38.2 bits (88), Expect = 2e-04
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 2/72 (2%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
T N F+E F + L S+ LVLD ++ ++ +G
Sbjct: 61 CTPNAVFNELFVF-DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWK 119
Query: 60 CLNLCKHYPVPR 71
+ + +
Sbjct: 120 EICDFPRRQIAK 131
>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 137
Score = 104 bits (261), Expect = 2e-29
Identities = 70/134 (52%), Positives = 99/134 (73%), Gaps = 1/134 (0%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVKWK 143
GKI ++L +ST++ LIV +I+C +L MD+NG+SDPF+KL+LKPD K K+KT +K K
Sbjct: 2 GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK 61
Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 203
TLNP FNEEF + K ++L+K++L I+VWD D GKSNDY+G +L ++KG+RL+HW +
Sbjct: 62 TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYEC 121
Query: 204 MKYPDHKHEGIHNL 217
+K D K E H L
Sbjct: 122 LKNKDKKIERWHQL 135
Score = 31.3 bits (70), Expect = 0.044
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
+T+NPEF+E+ + + +DL+ +SL I V D D +D++G + ++ +
Sbjct: 61 KTLNPEFNEEFFY-DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWY 119
Query: 60 CLNLCKHYPVPR 71
K + R
Sbjct: 120 ECLKNKDKKIER 131
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 157
Score = 99.5 bits (247), Expect = 5e-27
Identities = 48/134 (35%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKY-KTGVKWK 143
G I +L + L V +++ NL MD G SDP++K++L + + K KT +K
Sbjct: 12 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 71
Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 203
TLNP +NE F+ E ++ K +V+TV D D ND +G + + NS G LRHW DM
Sbjct: 72 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 131
Query: 204 MKYPDHKHEGIHNL 217
+ P H L
Sbjct: 132 LANPRRPIAQWHTL 145
Score = 37.9 bits (87), Expect = 3e-04
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
T+NP ++E +F V + + + VLD DK G +D +G+ N +
Sbjct: 71 NTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWS 129
Query: 60 CLNLCKHYPVPR 71
+ P+ +
Sbjct: 130 DMLANPRRPIAQ 141
>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 143
Score = 95.6 bits (237), Expect = 1e-25
Identities = 44/127 (34%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 79 EECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKT 138
+E + GK+ +L + + L+V +I+ L +D G SDP++K++L PD K+K++T
Sbjct: 15 KEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-KKKKFET 73
Query: 139 GVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS--KGDR 196
V KTLNP+FNE+F + +EL +TLV+ V+D D +D +G ++ N+ G
Sbjct: 74 KVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHV 133
Query: 197 LRHWVDM 203
W D+
Sbjct: 134 TEEWRDL 140
Score = 37.4 bits (86), Expect = 3e-04
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 4 NPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLN 62
NP F+E+ TF V ++L ++L + V D D++ HD +GE + P+N + + +
Sbjct: 81 NPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRD 139
Query: 63 L 63
L
Sbjct: 140 L 140
>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 145
Score = 90.3 bits (223), Expect = 1e-23
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKP-DLHKRKYKTGVKWK 143
G++ +LC+ L V +IK +NL MD GFSDP++K L +K KT +K
Sbjct: 7 GELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN 66
Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDR-LRHWVD 202
TLNP +NE + + L I V D D N+ +G + + HW +
Sbjct: 67 TLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAE 126
Query: 203 MMKYPDHKHEGIHNLS 218
M+ P E H L
Sbjct: 127 MLANPRKPVEHWHQLV 142
Score = 29.8 bits (66), Expect = 0.15
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPH 54
T+NP ++E L F V+ + L I V+D D G ++ +G R PH
Sbjct: 66 NTLNPTYNEALVF-DVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPH 119
>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis
protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 85.1 bits (210), Expect = 5e-22
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRK-YKTGVKWK 143
G++ + L F LIV ++ +L + +P++K+Y PD + +T K
Sbjct: 1 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 60
Query: 144 TLNPIFNEEFAIE-TKITELSKQTLVITVWDKDYGK--SNDYLGCLELCCNS-KGDRLRH 199
TL P +N+ F E ++ L IT+WD+ + +++LG + + + D H
Sbjct: 61 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 120
Query: 200 WVD 202
W
Sbjct: 121 WYK 123
Score = 45.5 bits (107), Expect = 4e-07
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG---HDFLGEARFPLNRL 51
+T+ P++++ + V + + L I + D + +FLGE L
Sbjct: 60 KTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 113
>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 132
Score = 84.7 bits (209), Expect = 9e-22
Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 5/129 (3%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKP-DLHKRKYKTGVKWK 143
G+I++ + LIV + NL+PMD NG SDP++KL L P + K KT
Sbjct: 4 GRIYIQAHIDREV--LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC 61
Query: 144 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS-KGDRLRHWVD 202
+LNP +NE F + K ++ + L + +WD D ND++G L + + + W
Sbjct: 62 SLNPEWNETFRFQLKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFK 120
Query: 203 MMKYPDHKH 211
++ + ++
Sbjct: 121 LLSQEEGEY 129
Score = 36.2 bits (83), Expect = 7e-04
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 53
++NPE++E F + E+D + L + + D D +DF+G F ++ L+
Sbjct: 61 CSLNPEWNETFRF-QLKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQK 112
>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 130
Score = 75.4 bits (184), Expect = 4e-18
Identities = 44/125 (35%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
G+I L + L+V +++ +L DSNGFSDP++K+YL PD K+K++T V KT
Sbjct: 5 GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPD-RKKKFQTKVHRKT 63
Query: 145 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK----GDRLRHW 200
LNPIFNE F + EL+++ L +V+D D +D +G + L + W
Sbjct: 64 LNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLW 123
Query: 201 VDMMK 205
D+++
Sbjct: 124 RDILE 128
>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 75.1 bits (184), Expect = 5e-18
Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Query: 83 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGF-SDPFIKLYLKPDLHKRKYKTGVK 141
G +F +L ++ +++A +VN+ + L MD SDP+IK+ + P+ K K KT V
Sbjct: 7 GLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE-KKHKVKTRVL 65
Query: 142 WKTLNPIFNEEF-AIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS---KGDRL 197
KTL+P F+E F T++ + L T+ D +D +G + + + ++
Sbjct: 66 RKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKM 125
Query: 198 RHWVDMMKYP 207
+++ P
Sbjct: 126 LMNREIISGP 135
Score = 41.2 bits (96), Expect = 2e-05
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 4 NPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 53
+P F E TFY + T + +LH +L D++ D +GE PL+ +
Sbjct: 70 DPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIEL 120
>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 142
Score = 73.4 bits (179), Expect = 3e-17
Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 15/132 (11%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH----------KR 134
G+I L + + LI+++++ NL+P D+NG+SDPF+K+YL P +
Sbjct: 7 GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 135 KYKTGVKWKTLNPIFNEEFAIE-TKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCN 191
K +T K+LNP +N+ + + +L K+TL +TVWD D SND+LG ++L
Sbjct: 65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124
Query: 192 SKGDRLRHWVDM 203
S D W +
Sbjct: 125 SHLDNTPRWYPL 136
Score = 37.6 bits (86), Expect = 3e-04
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
+++NPE+++ + + S+S L ++L + V D D++ +DFLGE L+ +
Sbjct: 73 KSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPR 132
Query: 60 CLNLCKH 66
L +
Sbjct: 133 WYPLKEQ 139
>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens)
[TaxId: 9606]}
Length = 138
Score = 73.0 bits (178), Expect = 3e-17
Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 5/123 (4%)
Query: 85 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 144
K+ L + +K L V ++ + +G D +++ + + +T +K +
Sbjct: 13 PKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQ 69
Query: 145 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVD 202
L+ + E + EL TL +T+ D + G L L S W +
Sbjct: 70 LHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGE 129
Query: 203 MMK 205
+
Sbjct: 130 LKT 132
>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1
(PLC-D1), C-terminal domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 131
Score = 60.2 bits (145), Expect = 2e-12
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 8/113 (7%)
Query: 96 KKRALIVNLIKCTNL--IPMDSNGFSDPFIKLYLK--PDLHKRKYKTGVKWKTLNPIFNE 151
+ L V +I L + + N DP + + + + + NP ++
Sbjct: 2 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDM 61
Query: 152 EFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVD 202
EF E +T + V D D ND++G + +G R H +
Sbjct: 62 EFEFE--VTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLS 112
Score = 30.1 bits (67), Expect = 0.093
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 4 NPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLRPHI 55
NP + + F L + +V D D + F+G++ P N L+
Sbjct: 56 NPRWDMEFEFEVTVPD---LALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY 105
>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 136
Score = 59.4 bits (143), Expect = 4e-12
Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
L V L+ L D DP+++L + + + + P +NE F +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCR---TQDQKSNVAEGMGTTPEWNETFIFT--V 66
Query: 160 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNS---KGDRLRHWVDMMKYPDHKHEGIHN 216
+E + L ++DKD G +D +G + +G +++K D +++G
Sbjct: 67 SEGT-TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK--DEEYKGEIW 123
Query: 217 LSIK 220
+++
Sbjct: 124 VALS 127
Score = 35.5 bits (81), Expect = 0.002
Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 18/94 (19%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 59
PE++E F +VSE L + D D D +GEA PL + S
Sbjct: 52 MGTTPEWNETFIF-TVSEGT---TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPP 107
Query: 60 CLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 93
Y V ++EE G+I++ L F
Sbjct: 108 -----TAYNVVKDEEY--------KGEIWVALSF 128
>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 58.2 bits (140), Expect = 8e-12
Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 13/130 (10%)
Query: 100 LIVNLIKCTNLIP---MDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE 156
V +++ T + D DP+++L++ + +T +NP++NE F
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTT-PDSRKRTRHFNNDINPVWNETFEFI 63
Query: 157 TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS--KGDRLRHWVDMMKYPDHKHEGI 214
+ + L IT+ D +Y ++ LG +S G++ + E +
Sbjct: 64 --LDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIF----NQVTEMV 116
Query: 215 HNLSIKPLSS 224
+S++ SS
Sbjct: 117 LEMSLEVASS 126
Score = 37.0 bits (85), Expect = 4e-04
Identities = 8/60 (13%), Positives = 20/60 (33%)
Query: 4 NPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNL 63
N + L I ++D + + LG A F ++ ++ +++
Sbjct: 50 NDINPVWNETFEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIF 109
>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane
domain-containing protein 2, MCTP2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 55.2 bits (132), Expect = 1e-10
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 159
L V ++K +L+ D +G SDPF L L + +T +K LNP +N+ F T
Sbjct: 8 LQVKVLKAADLLAADFSGKSDPFCLLELG----NDRLQTHTVYKNLNPEWNKVF---TFP 60
Query: 160 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHE 212
+ L +TV+D+D K D+LG + + S D + + +
Sbjct: 61 IKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAF 113
Score = 27.4 bits (60), Expect = 0.66
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 24 QSLHILVLDDDK-YGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPR 71
L + V D+D DFLG+ PL +R L +
Sbjct: 66 DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFK 114
>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 123
Score = 50.1 bits (119), Expect = 8e-09
Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 10/110 (9%)
Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIETK 158
+ N + +L + S PF + +K L R K T+ P + F
Sbjct: 7 ISFNSYELGSLQAE--DDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIY 64
Query: 159 ITELSKQTLVITVWDKDYGKSNDY---LGCLELCCNSKGDRLRHWVDMMK 205
+ + I + ++ + L C + W+D+
Sbjct: 65 E----GRVIQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP 110
>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 122
Score = 50.0 bits (119), Expect = 8e-09
Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 14/110 (12%)
Query: 100 LIVNLIKCTNLIPMDSNGFSDPFIKLYLK--PDLHKRKYKTG--VKWKTLNPIFNEEFAI 155
L + +I L ++++ L P KR+Y+T ++NP++ EE +
Sbjct: 3 LSITVISGQFLSERSV----RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58
Query: 156 ETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVDM 203
KI +L + V ++ N +LG + + + G
Sbjct: 59 FEKILMPELASLRVAVMEEG----NKFLGHRIIPINALNSGYHHLCLHSE 104
Score = 34.2 bits (78), Expect = 0.003
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 1 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLC 60
+INP + E+ F L SL + V+++ + FLG P+N L LC
Sbjct: 46 NSINPVWKEE-PFVFEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSGY-HHLC 100
Query: 61 LNLCKHYPVP 70
L+ + P+
Sbjct: 101 LHSESNMPLT 110
>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 43.6 bits (102), Expect = 2e-06
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 8/94 (8%)
Query: 95 TKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFA 154
T K L + +I + P++++ + K + T +P + +
Sbjct: 3 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTE----KCNNTNSPKWKQPL- 57
Query: 155 IETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 188
+ L VW KS+ LG L
Sbjct: 58 ---TVIVTPVSKLHFRVWSHQTLKSDVLLGTAAL 88
>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 136
Score = 41.4 bits (96), Expect = 1e-05
Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 22/121 (18%)
Query: 100 LIVNLIKCTNLIPMD-----------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPI 148
L + + + +L P DP+I L + + T K KT +P
Sbjct: 8 LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQ---TATKQKTNSPA 64
Query: 149 FNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGC----LELCCNSKGDRLRHWVDMM 204
+++EF + + + + V+ +D++ E + W+D+
Sbjct: 65 WHDEFVTDVCNG----RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE 120
Query: 205 K 205
Sbjct: 121 P 121
>d2al1a1 c.1.11.1 (A:142-436) Enolase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 295
Score = 25.7 bits (56), Expect = 4.1
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
Query: 32 DDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVP------REEEVWGEEECWQHG 85
D KY DF L DL +L K YP+ E++ ++
Sbjct: 113 KDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPFAEDDWEAWSHFFKTA 172
Query: 86 KIFL 89
I +
Sbjct: 173 GIQI 176
>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon
AmiR {Pseudomonas aeruginosa [TaxId: 287]}
Length = 189
Score = 25.4 bits (54), Expect = 4.9
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 15 SVSETDLSLQSLHILVLDDD 34
S + SL+ L +LVL+
Sbjct: 1 SANSLLGSLRELQVLVLNPP 20
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 24.9 bits (53), Expect = 6.8
Identities = 20/116 (17%), Positives = 40/116 (34%)
Query: 97 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE 156
K L+ L+ I D G + I + + ++ E IE
Sbjct: 13 KSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIE 72
Query: 157 TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHE 212
+ E+ K +V+ V D + LE N + + + VD+++ + +
Sbjct: 73 RTLQEIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEI 128
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.140 0.448
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 904,448
Number of extensions: 42765
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 41
Length of query: 224
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 142
Effective length of database: 1,281,736
Effective search space: 182006512
Effective search space used: 182006512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)