BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12139
(65 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|307203970|gb|EFN82877.1| E3 ubiquitin-protein ligase UBR5 [Harpegnathos saltator]
Length = 2836
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 38/45 (84%), Gaps = 1/45 (2%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLL 45
MLLELSPAQLLMLLAS++ALRQKVEEA +++ + DL+SE LL
Sbjct: 2467 MLLELSPAQLLMLLASEDALRQKVEEAFELIHS-HNQDLTSEALL 2510
>gi|405968487|gb|EKC33554.1| E3 ubiquitin-protein ligase UBR5 [Crassostrea gigas]
Length = 1240
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 39/45 (86%), Gaps = 1/45 (2%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLL 45
MLLELSPAQLL++L S+E LRQ+V+EA+DI+M+ G +LS+E LL
Sbjct: 867 MLLELSPAQLLLMLTSEETLRQRVDEAVDIIMS-HGRELSAEALL 910
>gi|345498130|ref|XP_003428158.1| PREDICTED: E3 ubiquitin-protein ligase hyd-like isoform 2 [Nasonia
vitripennis]
Length = 2928
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 38/45 (84%), Gaps = 1/45 (2%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLL 45
MLLE++PAQLLMLLAS+E+LRQKVEEA +++ + DL+SE LL
Sbjct: 2558 MLLEMNPAQLLMLLASEESLRQKVEEAFELIQS-HNQDLASEALL 2601
>gi|345498132|ref|XP_001605335.2| PREDICTED: E3 ubiquitin-protein ligase hyd-like isoform 1 [Nasonia
vitripennis]
Length = 2922
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 38/45 (84%), Gaps = 1/45 (2%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLL 45
MLLE++PAQLLMLLAS+E+LRQKVEEA +++ + DL+SE LL
Sbjct: 2552 MLLEMNPAQLLMLLASEESLRQKVEEAFELIQS-HNQDLASEALL 2595
>gi|307188163|gb|EFN72995.1| E3 ubiquitin-protein ligase hyd [Camponotus floridanus]
Length = 2716
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 37/42 (88%), Gaps = 1/42 (2%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSE 42
MLLELSPAQLLMLLAS++ALRQKVEEA +++ + + DL+SE
Sbjct: 2347 MLLELSPAQLLMLLASEDALRQKVEEAFELIHSHT-QDLTSE 2387
>gi|340721355|ref|XP_003399087.1| PREDICTED: e3 ubiquitin-protein ligase hyd-like [Bombus terrestris]
Length = 2826
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 32/35 (91%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLS 35
MLLELSPAQLLMLLAS++ALRQKVEEA +++ + S
Sbjct: 2457 MLLELSPAQLLMLLASEDALRQKVEEAFELIRSHS 2491
>gi|350406689|ref|XP_003487850.1| PREDICTED: E3 ubiquitin-protein ligase hyd-like [Bombus impatiens]
Length = 2826
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/35 (74%), Positives = 32/35 (91%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLS 35
MLLELSPAQLLMLLAS++ALRQKVEEA +++ + S
Sbjct: 2457 MLLELSPAQLLMLLASEDALRQKVEEAFELIRSHS 2491
>gi|260787218|ref|XP_002588651.1| hypothetical protein BRAFLDRAFT_101562 [Branchiostoma floridae]
gi|229273818|gb|EEN44662.1| hypothetical protein BRAFLDRAFT_101562 [Branchiostoma floridae]
Length = 2721
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLLGSSDGIDIHSST 57
MLLE+SPAQLL+LLAS+++LRQ+VEEA+DI+ LS S+ + LG+ D S T
Sbjct: 2347 MLLEMSPAQLLLLLASEDSLRQRVEEAVDII--LSHGRESTADPLGAIDLFSYSSDT 2401
>gi|357616934|gb|EHJ70493.1| hypothetical protein KGM_10406 [Danaus plexippus]
Length = 2852
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/32 (75%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLEL+PAQLL+LLAS++ALRQKV EAMD+++
Sbjct: 2485 MLLELTPAQLLVLLASEDALRQKVREAMDLIV 2516
>gi|380015813|ref|XP_003691889.1| PREDICTED: E3 ubiquitin-protein ligase hyd-like [Apis florea]
Length = 2824
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLS 35
MLLEL PAQLLMLLAS++AL+QKVEEA +I+ + S
Sbjct: 2455 MLLELPPAQLLMLLASEDALQQKVEEAFEIIRSHS 2489
>gi|328787152|ref|XP_392625.4| PREDICTED: e3 ubiquitin-protein ligase hyd isoform 1 [Apis mellifera]
Length = 2795
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLS 35
MLLEL PAQLLMLLAS++AL+QKVEEA +I+ + S
Sbjct: 2426 MLLELPPAQLLMLLASEDALQQKVEEAFEIIRSHS 2460
>gi|321470831|gb|EFX81806.1| hyperplastic disks-like protein [Daphnia pulex]
Length = 2828
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 31/35 (88%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLS 35
MLLELSPAQLLMLLAS+++L Q+V EA+ +++ LS
Sbjct: 2459 MLLELSPAQLLMLLASEDSLEQRVNEAVAVILELS 2493
>gi|242013030|ref|XP_002427224.1| ubiquitin-protein ligase EDD1, putative [Pediculus humanus corporis]
gi|212511528|gb|EEB14486.1| ubiquitin-protein ligase EDD1, putative [Pediculus humanus corporis]
Length = 2738
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLLG 46
MLLELS QLLMLLAS++ALRQKV++A +++++ G D S + LG
Sbjct: 2360 MLLELSSGQLLMLLASEDALRQKVDQAFEMILSY-GDDNGSASHLG 2404
>gi|328712997|ref|XP_001947833.2| PREDICTED: e3 ubiquitin-protein ligase hyd [Acyrthosiphon pisum]
Length = 2955
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/32 (71%), Positives = 28/32 (87%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL LLAS+EALR +V EA+ ++M
Sbjct: 2565 MLLELSPAQLLTLLASEEALRMRVNEAIALLM 2596
>gi|312377186|gb|EFR24082.1| hypothetical protein AND_11595 [Anopheles darlingi]
Length = 3677
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 29/33 (87%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMN 33
MLLEL P Q+L+LLASD+ LRQK+ EA++I+++
Sbjct: 3244 MLLELPPTQILLLLASDDNLRQKIGEALEIILH 3276
>gi|347966559|ref|XP_321295.5| AGAP001780-PA [Anopheles gambiae str. PEST]
gi|333470005|gb|EAA01513.5| AGAP001780-PA [Anopheles gambiae str. PEST]
Length = 3537
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 27/32 (84%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLEL P Q+L LLASDE LRQ++ EA++I++
Sbjct: 3084 MLLELPPTQVLHLLASDENLRQRIGEAVEIIV 3115
>gi|443690323|gb|ELT92482.1| hypothetical protein CAPTEDRAFT_219094 [Capitella teleta]
Length = 2617
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLL 45
MLLEL+P+QLL LL ++ LRQ+V EA +I+M+ G +L+++ LL
Sbjct: 2239 MLLELAPSQLLTLLTCEDQLRQRVYEAEEIIMS-HGRELNADALL 2282
>gi|391347217|ref|XP_003747861.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR5-like
[Metaseiulus occidentalis]
Length = 2485
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 28/31 (90%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE +P QL++LLAS++ALRQKVEE ++++
Sbjct: 2123 MLLEQTPPQLILLLASEDALRQKVEECVELL 2153
>gi|195400289|ref|XP_002058750.1| GJ11179 [Drosophila virilis]
gi|194147472|gb|EDW63179.1| GJ11179 [Drosophila virilis]
Length = 2881
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 25/31 (80%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ QLL +L+SDE LRQKV EA+DI+
Sbjct: 2523 MLLEIPTPQLLSVLSSDETLRQKVNEAVDII 2553
>gi|170051592|ref|XP_001861834.1| ubiquitin-protein ligase [Culex quinquefasciatus]
gi|167872771|gb|EDS36154.1| ubiquitin-protein ligase [Culex quinquefasciatus]
Length = 775
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 38/53 (71%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLLGSSDGIDI 53
MLL+L Q+LMLLAS+E+LRQK EA++I+++ ++ + ++ G++ G +
Sbjct: 389 MLLDLPATQILMLLASEESLRQKANEALEIILSRQRLEIDNLSVAGAAGGSSV 441
>gi|195151709|ref|XP_002016781.1| GL21951 [Drosophila persimilis]
gi|194111838|gb|EDW33881.1| GL21951 [Drosophila persimilis]
Length = 866
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSEN 43
MLLE+ QLL +L+SDE LRQKV EA++I+ + S+N
Sbjct: 507 MLLEIPTPQLLSVLSSDETLRQKVNEAIEIITFKQKSESCSQN 549
>gi|270007492|gb|EFA03940.1| hypothetical protein TcasGA2_TC014081 [Tribolium castaneum]
Length = 2916
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 39/47 (82%), Gaps = 2/47 (4%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMN--LSGHDLSSENLL 45
MLLELSPAQLL+LLAS+++LR KVEEA+++++ S +L+SE LL
Sbjct: 2532 MLLELSPAQLLLLLASEDSLRAKVEEAVEMILAHLHSQQELTSEALL 2578
>gi|195453692|ref|XP_002073898.1| GK12903 [Drosophila willistoni]
gi|194169983|gb|EDW84884.1| GK12903 [Drosophila willistoni]
Length = 2923
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ QLL +L+SDE LRQKV EA++I+
Sbjct: 2568 MLLEIPTPQLLSVLSSDETLRQKVNEAIEII 2598
>gi|189237186|ref|XP_967079.2| PREDICTED: similar to ubiquitin-protein ligase [Tribolium castaneum]
Length = 2858
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 39/47 (82%), Gaps = 2/47 (4%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMN--LSGHDLSSENLL 45
MLLELSPAQLL+LLAS+++LR KVEEA+++++ S +L+SE LL
Sbjct: 2474 MLLELSPAQLLLLLASEDSLRAKVEEAVEMILAHLHSQQELTSEALL 2520
>gi|198453187|ref|XP_002137611.1| hyperplastic discs [Drosophila pseudoobscura pseudoobscura]
gi|198132248|gb|EDY68169.1| hyperplastic discs [Drosophila pseudoobscura pseudoobscura]
Length = 2859
Score = 41.2 bits (95), Expect = 0.087, Method: Composition-based stats.
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSEN 43
MLLE+ QLL +L+SDE LRQKV EA++I+ + S+N
Sbjct: 2500 MLLEIPTPQLLSVLSSDETLRQKVNEAIEIITFKQKSESCSQN 2542
>gi|195107722|ref|XP_001998457.1| GI23976 [Drosophila mojavensis]
gi|193915051|gb|EDW13918.1| GI23976 [Drosophila mojavensis]
Length = 2882
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ QLL +L+SDE LRQKV EA++I+
Sbjct: 2525 MLLEIPTPQLLSVLSSDETLRQKVNEAVEII 2555
>gi|195062465|ref|XP_001996197.1| GH22338 [Drosophila grimshawi]
gi|193899692|gb|EDV98558.1| GH22338 [Drosophila grimshawi]
Length = 2909
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ QLL +L+SDE LRQKV EA++I+
Sbjct: 2551 MLLEIPTPQLLSVLSSDETLRQKVNEAVEII 2581
>gi|194767643|ref|XP_001965924.1| GF11551 [Drosophila ananassae]
gi|190619767|gb|EDV35291.1| GF11551 [Drosophila ananassae]
Length = 2881
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ QLL +L+SDE LRQKV EA++I+
Sbjct: 2522 MLLEIPTPQLLSVLSSDETLRQKVNEAVEII 2552
>gi|47217880|emb|CAG05002.1| unnamed protein product [Tetraodon nigroviridis]
Length = 2317
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/32 (71%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +VEEAMD+++
Sbjct: 1929 MLLELSPAQLLLLLASEDSLRARVEEAMDLLI 1960
>gi|195499542|ref|XP_002096993.1| hyd [Drosophila yakuba]
gi|194183094|gb|EDW96705.1| hyd [Drosophila yakuba]
Length = 2892
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ QLL +++SDE LRQKV EA++I+
Sbjct: 2533 MLLEIPTPQLLSVISSDETLRQKVNEAIEII 2563
>gi|194902844|ref|XP_001980772.1| GG17340 [Drosophila erecta]
gi|190652475|gb|EDV49730.1| GG17340 [Drosophila erecta]
Length = 2890
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ QLL +++SDE LRQKV EA++I+
Sbjct: 2531 MLLEIPTPQLLSVISSDETLRQKVNEAIEII 2561
>gi|195572184|ref|XP_002104076.1| hyd [Drosophila simulans]
gi|194200003|gb|EDX13579.1| hyd [Drosophila simulans]
Length = 2749
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ QLL +++SDE LRQKV EA++I+
Sbjct: 2021 MLLEIPTPQLLSVISSDETLRQKVNEAIEII 2051
>gi|157111695|ref|XP_001651687.1| ubiquitin-protein ligase [Aedes aegypti]
gi|108878317|gb|EAT42542.1| AAEL005930-PA [Aedes aegypti]
Length = 2833
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 32/44 (72%), Gaps = 2/44 (4%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENL 44
MLL+L Q+LMLLAS+E+LRQK EA++++ LS L +NL
Sbjct: 2473 MLLDLPATQILMLLASEESLRQKANEALEMI--LSRQRLEIDNL 2514
>gi|293348669|ref|XP_001061308.2| PREDICTED: E3 ubiquitin-protein ligase UBR5 [Rattus norvegicus]
Length = 2782
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +VEEAM++++
Sbjct: 2403 MLLELSPAQLLLLLASEDSLRARVEEAMELIV 2434
>gi|149066497|gb|EDM16370.1| progestin induced protein [Rattus norvegicus]
Length = 2550
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +VEEAM++++
Sbjct: 2171 MLLELSPAQLLLLLASEDSLRARVEEAMELIV 2202
>gi|378405229|sp|Q62671.3|UBR5_RAT RecName: Full=E3 ubiquitin-protein ligase UBR5; AltName: Full=100 kDa
protein; AltName: Full=E3 ubiquitin-protein ligase, HECT
domain-containing 1; AltName: Full=Hyperplastic discs
protein homolog
Length = 2788
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +VEEAM++++
Sbjct: 2409 MLLELSPAQLLLLLASEDSLRARVEEAMELIV 2440
>gi|392349474|ref|XP_003750387.1| PREDICTED: E3 ubiquitin-protein ligase UBR5 [Rattus norvegicus]
Length = 2744
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +VEEAM++++
Sbjct: 2365 MLLELSPAQLLLLLASEDSLRARVEEAMELIV 2396
>gi|7715521|gb|AAF68076.1|AF252694_1 ubiquitin-protein ligase [Drosophila simulans]
Length = 496
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ QLL +++SDE LRQKV EA++I+
Sbjct: 207 MLLEIPTPQLLSVISSDETLRQKVNEAIEII 237
>gi|7715527|gb|AAF68079.1|AF252697_1 ubiquitin-protein ligase [Drosophila simulans]
Length = 496
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ QLL +++SDE LRQKV EA++I+
Sbjct: 207 MLLEIPTPQLLSVISSDETLRQKVNEAIEII 237
>gi|2673887|gb|AAB88625.1| hyperplastic discs protein [Drosophila melanogaster]
Length = 2895
Score = 39.7 bits (91), Expect = 0.22, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ QLL +++SDE LRQKV EA++I+
Sbjct: 2536 MLLEIPTPQLLSVISSDETLRQKVNEAIEII 2566
>gi|7715529|gb|AAF68080.1|AF252698_1 ubiquitin-protein ligase [Drosophila simulans]
Length = 496
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ QLL +++SDE LRQKV EA++I+
Sbjct: 207 MLLEIPTPQLLSVISSDETLRQKVNEAIEII 237
>gi|7715523|gb|AAF68077.1|AF252695_1 ubiquitin-protein ligase [Drosophila simulans]
gi|7715525|gb|AAF68078.1|AF252696_1 ubiquitin-protein ligase [Drosophila simulans]
gi|7715531|gb|AAF68081.1|AF252699_1 ubiquitin-protein ligase [Drosophila simulans]
Length = 496
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ QLL +++SDE LRQKV EA++I+
Sbjct: 207 MLLEIPTPQLLSVISSDETLRQKVNEAIEII 237
>gi|7715533|gb|AAF68082.1|AF252700_1 ubiquitin-protein ligase [Drosophila simulans]
Length = 496
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ QLL +++SDE LRQKV EA++I+
Sbjct: 207 MLLEIPTPQLLSVISSDETLRQKVNEAIEII 237
>gi|7715535|gb|AAF68083.1|AF252701_1 ubiquitin-protein ligase [Drosophila simulans]
Length = 496
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ QLL +++SDE LRQKV EA++I+
Sbjct: 207 MLLEIPTPQLLSVISSDETLRQKVNEAIEII 237
>gi|24645474|ref|NP_524296.2| hyperplastic discs [Drosophila melanogaster]
gi|68844926|sp|P51592.3|HYD_DROME RecName: Full=E3 ubiquitin-protein ligase hyd; AltName: Full=Protein
hyperplastic discs
gi|23170838|gb|AAF54431.2| hyperplastic discs [Drosophila melanogaster]
Length = 2885
Score = 39.7 bits (91), Expect = 0.24, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ QLL +++SDE LRQKV EA++I+
Sbjct: 2526 MLLEIPTPQLLSVISSDETLRQKVNEAIEII 2556
>gi|55535|emb|CAA45756.1| 100 kDa protein [Rattus norvegicus]
Length = 889
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +VEEAM++++
Sbjct: 510 MLLELSPAQLLLLLASEDSLRARVEEAMELIV 541
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSS 41
MLLE+ ++L LL S EAL+ KV EAMD++ N++ +S
Sbjct: 565 MLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVAQQQANS 605
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLS 35
MLLE+ ++L LL S EAL+ KV EAMD++ N++
Sbjct: 689 MLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVA 723
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 39.7 bits (91), Expect = 0.26, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSS 41
MLLE+ ++L LL S EAL+ KV EAMD++ N++ +S
Sbjct: 584 MLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVAQQQANS 624
>gi|7716928|gb|AAF68614.1|AF255318_1 ubiquitin-protein ligase, partial [Drosophila yakuba]
Length = 496
Score = 39.3 bits (90), Expect = 0.28, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 25/31 (80%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ QLL +++SDE LRQKV EA++I+
Sbjct: 207 MLLEIPTPQLLSVISSDETLRQKVNEAIEII 237
>gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 39.3 bits (90), Expect = 0.31, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLS 35
MLLE+ ++L LL S EAL+ KV EAMD++ N++
Sbjct: 600 MLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVA 634
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLS 35
MLLE+ ++L LL S EAL+ KV EAMD++ N++
Sbjct: 602 MLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVA 636
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 39.3 bits (90), Expect = 0.33, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLS 35
MLLE+ ++L LL S EAL+ KV EAMD++ N++
Sbjct: 602 MLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVA 636
>gi|444727942|gb|ELW68415.1| E3 ubiquitin-protein ligase UBR5 [Tupaia chinensis]
Length = 2032
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 38/45 (84%), Gaps = 1/45 (2%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLL 45
MLLELSPAQLL+LLAS+++LR +V+EAM++++ G D ++++L
Sbjct: 1653 MLLELSPAQLLLLLASEDSLRARVDEAMELII-AHGRDNGADSIL 1696
>gi|222629159|gb|EEE61291.1| hypothetical protein OsJ_15377 [Oryza sativa Japonica Group]
Length = 613
Score = 39.3 bits (90), Expect = 0.35, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLS 35
MLLE+ ++L LL S EAL+ KV EAMD++ N++
Sbjct: 556 MLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVA 590
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLS 35
MLLE+ ++L LL S EAL+ KV EAMD++ N++
Sbjct: 592 MLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVA 626
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 38.9 bits (89), Expect = 0.36, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLS 35
MLLE+ ++L LL S EAL+ KV EAMD++ N++
Sbjct: 598 MLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVA 632
>gi|339717490|pdb|3NTW|A Chain A, Structure Of The Mlle Domain Of Edd In Complex With A
Pam2 Peptide From Paip1
gi|339717492|pdb|3NTW|C Chain C, Structure Of The Mlle Domain Of Edd In Complex With A
Pam2 Peptide From Paip1
Length = 65
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +VEEAM++++
Sbjct: 32 MLLELSPAQLLLLLASEDSLRARVEEAMELIV 63
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLS 35
MLLE+ ++L LL S EAL+ KV EAMD++ N++
Sbjct: 595 MLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVA 629
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLS 35
MLLE+ ++L LL S EAL+ KV EAMD++ N++
Sbjct: 604 MLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVA 638
>gi|432907705|ref|XP_004077674.1| PREDICTED: E3 ubiquitin-protein ligase UBR5-like isoform 2 [Oryzias
latipes]
Length = 2796
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +VEEAM++++
Sbjct: 2415 MLLELSPAQLLLLLASEDSLRARVEEAMELLI 2446
>gi|410904811|ref|XP_003965885.1| PREDICTED: E3 ubiquitin-protein ligase UBR5-like isoform 3 [Takifugu
rubripes]
Length = 2801
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +VEEAM++++
Sbjct: 2421 MLLELSPAQLLLLLASEDSLRARVEEAMELLI 2452
>gi|348543927|ref|XP_003459433.1| PREDICTED: E3 ubiquitin-protein ligase UBR5 isoform 1 [Oreochromis
niloticus]
Length = 2795
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +VEEAM++++
Sbjct: 2415 MLLELSPAQLLLLLASEDSLRARVEEAMELLI 2446
>gi|432907703|ref|XP_004077673.1| PREDICTED: E3 ubiquitin-protein ligase UBR5-like isoform 1 [Oryzias
latipes]
Length = 2792
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +VEEAM++++
Sbjct: 2411 MLLELSPAQLLLLLASEDSLRARVEEAMELLI 2442
>gi|410904807|ref|XP_003965883.1| PREDICTED: E3 ubiquitin-protein ligase UBR5-like isoform 1 [Takifugu
rubripes]
Length = 2791
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +VEEAM++++
Sbjct: 2411 MLLELSPAQLLLLLASEDSLRARVEEAMELLI 2442
>gi|348543929|ref|XP_003459434.1| PREDICTED: E3 ubiquitin-protein ligase UBR5 isoform 2 [Oreochromis
niloticus]
Length = 2792
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +VEEAM++++
Sbjct: 2412 MLLELSPAQLLLLLASEDSLRARVEEAMELLI 2443
>gi|256419025|ref|NP_001157866.1| E3 ubiquitin-protein ligase UBR5 [Danio rerio]
Length = 2794
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +VEEAM++++
Sbjct: 2414 MLLELSPAQLLLLLASEDSLRARVEEAMELLI 2445
>gi|410904809|ref|XP_003965884.1| PREDICTED: E3 ubiquitin-protein ligase UBR5-like isoform 2 [Takifugu
rubripes]
Length = 2784
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +VEEAM++++
Sbjct: 2405 MLLELSPAQLLLLLASEDSLRARVEEAMELLI 2436
>gi|51980613|gb|AAH81553.1| Ubr5 protein [Danio rerio]
Length = 1790
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +VEEAM++++
Sbjct: 1410 MLLELSPAQLLLLLASEDSLRARVEEAMELLI 1441
>gi|14029147|gb|AAK51123.1| polyadenylated mRNA-binding protein 2 [Anemia phyllitidis]
Length = 472
Score = 38.9 bits (89), Expect = 0.45, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 6/56 (10%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLLGSSDGIDIHSS 56
MLLE+ ++L L+ S EAL+ KV EAMD++ ++ N S++GID +S
Sbjct: 414 MLLEMDQTEVLHLIESPEALKAKVAEAMDVL------QMAQANAGASTNGIDHFAS 463
>gi|449284076|gb|EMC90657.1| E3 ubiquitin-protein ligase UBR5, partial [Columba livia]
Length = 2775
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2396 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2427
>gi|410987612|ref|XP_004000092.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR5
[Felis catus]
Length = 2798
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2419 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2450
>gi|334326089|ref|XP_003340712.1| PREDICTED: LOW QUALITY PROTEIN: e3 ubiquitin-protein ligase UBR5-like
[Monodelphis domestica]
Length = 2785
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2406 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2437
>gi|432107624|gb|ELK32857.1| E3 ubiquitin-protein ligase UBR5 [Myotis davidii]
Length = 2722
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2343 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2374
>gi|431901751|gb|ELK08628.1| E3 ubiquitin-protein ligase UBR5, partial [Pteropus alecto]
Length = 2768
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2389 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2420
>gi|397502236|ref|XP_003821771.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR5 [Pan
paniscus]
Length = 2792
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2413 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2444
>gi|163310753|ref|NP_001106192.1| E3 ubiquitin-protein ligase UBR5 isoform 2 [Mus musculus]
Length = 2792
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2413 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2444
>gi|417515766|gb|JAA53693.1| E3 ubiquitin-protein ligase UBR5 [Sus scrofa]
Length = 2792
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2413 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2444
>gi|410360392|gb|JAA44705.1| ubiquitin protein ligase E3 component n-recognin 5 [Pan troglodytes]
Length = 2793
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2413 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2444
>gi|147770378|emb|CAN78155.1| hypothetical protein VITISV_032623 [Vitis vinifera]
Length = 602
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENL-LGSSDGIDIHSSTVK 59
MLLE+ + L LL S EAL+ KV EAMD++ N++ +S L S I +++K
Sbjct: 8 MLLEMGQTEFLHLLESPEALKSKVAEAMDVLRNVAQQQANSPTXQLSSXLCFYICFNSIK 67
Query: 60 G 60
G
Sbjct: 68 G 68
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSS 41
MLLE+ ++L LL S EAL+ KV EAMD++ N++ +S
Sbjct: 546 MLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVAQQQANS 586
>gi|119612252|gb|EAW91846.1| E3 ubiquitin protein ligase, HECT domain containing, 1, isoform CRA_d
[Homo sapiens]
Length = 2799
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2419 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2450
>gi|119612249|gb|EAW91843.1| E3 ubiquitin protein ligase, HECT domain containing, 1, isoform CRA_a
[Homo sapiens]
Length = 2798
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2419 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2450
>gi|426236177|ref|XP_004012049.1| PREDICTED: E3 ubiquitin-protein ligase UBR5 [Ovis aries]
Length = 3098
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2719 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2750
>gi|76363510|sp|Q80TP3.2|UBR5_MOUSE RecName: Full=E3 ubiquitin-protein ligase UBR5; AltName: Full=E3
ubiquitin-protein ligase, HECT domain-containing 1;
AltName: Full=Hyperplastic discs protein homolog
Length = 2792
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2413 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2444
>gi|410224634|gb|JAA09536.1| ubiquitin protein ligase E3 component n-recognin 5 [Pan troglodytes]
gi|410262452|gb|JAA19192.1| ubiquitin protein ligase E3 component n-recognin 5 [Pan troglodytes]
gi|410307104|gb|JAA32152.1| ubiquitin protein ligase E3 component n-recognin 5 [Pan troglodytes]
gi|410360394|gb|JAA44706.1| ubiquitin protein ligase E3 component n-recognin 5 [Pan troglodytes]
Length = 2799
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2419 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2450
>gi|395818122|ref|XP_003782486.1| PREDICTED: E3 ubiquitin-protein ligase UBR5 isoform 2 [Otolemur
garnettii]
Length = 2792
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2413 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2444
>gi|395512227|ref|XP_003760344.1| PREDICTED: E3 ubiquitin-protein ligase UBR5 isoform 2 [Sarcophilus
harrisii]
Length = 2792
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2413 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2444
>gi|383418961|gb|AFH32694.1| E3 ubiquitin-protein ligase UBR5 [Macaca mulatta]
Length = 2793
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2413 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2444
>gi|301603847|ref|XP_002931579.1| PREDICTED: e3 ubiquitin-protein ligase UBR5-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 2792
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2412 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2443
>gi|301603845|ref|XP_002931578.1| PREDICTED: e3 ubiquitin-protein ligase UBR5-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 2792
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2412 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2443
>gi|47498599|gb|AAT28194.1| hyperplastic discs protein [Mus musculus]
Length = 2792
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2413 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2444
>gi|449495044|ref|XP_002199000.2| PREDICTED: E3 ubiquitin-protein ligase UBR5 [Taeniopygia guttata]
Length = 2775
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2396 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2427
>gi|9545980|gb|AAF88143.1|U95000_1 hyd protein [Homo sapiens]
Length = 2798
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2418 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2449
>gi|402878881|ref|XP_003903092.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR5
[Papio anubis]
Length = 2782
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2403 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2434
>gi|395739960|ref|XP_002819391.2| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR5
[Pongo abelii]
Length = 2736
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2357 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2388
>gi|301774460|ref|XP_002922646.1| PREDICTED: e3 ubiquitin-protein ligase UBR5-like [Ailuropoda
melanoleuca]
Length = 2814
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2435 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2466
>gi|281340155|gb|EFB15739.1| hypothetical protein PANDA_011631 [Ailuropoda melanoleuca]
Length = 2785
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2406 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2437
>gi|410224636|gb|JAA09537.1| ubiquitin protein ligase E3 component n-recognin 5 [Pan troglodytes]
gi|410262454|gb|JAA19193.1| ubiquitin protein ligase E3 component n-recognin 5 [Pan troglodytes]
Length = 2801
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2421 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2452
>gi|383411539|gb|AFH28983.1| E3 ubiquitin-protein ligase UBR5 [Macaca mulatta]
Length = 2799
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2419 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2450
>gi|355698141|gb|EHH28689.1| E3 ubiquitin-protein ligase UBR5, partial [Macaca mulatta]
gi|355779871|gb|EHH64347.1| E3 ubiquitin-protein ligase UBR5, partial [Macaca fascicularis]
Length = 2779
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2399 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2430
>gi|327269442|ref|XP_003219503.1| PREDICTED: e3 ubiquitin-protein ligase UBR5-like [Anolis
carolinensis]
Length = 2795
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2415 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2446
>gi|109087122|ref|XP_001100326.1| PREDICTED: e3 ubiquitin-protein ligase UBR5 [Macaca mulatta]
Length = 2799
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2419 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2450
>gi|71891755|dbj|BAA74919.3| KIAA0896 protein [Homo sapiens]
Length = 2820
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2441 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2472
>gi|395512225|ref|XP_003760343.1| PREDICTED: E3 ubiquitin-protein ligase UBR5 isoform 1 [Sarcophilus
harrisii]
Length = 2798
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2419 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2450
>gi|344272993|ref|XP_003408312.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR5-like
[Loxodonta africana]
Length = 2789
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2410 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2441
>gi|338728537|ref|XP_001915907.2| PREDICTED: LOW QUALITY PROTEIN: e3 ubiquitin-protein ligase UBR5-like
[Equus caballus]
Length = 2813
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2434 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2465
>gi|300793668|ref|NP_001179346.1| E3 ubiquitin-protein ligase UBR5 [Bos taurus]
gi|296480529|tpg|DAA22644.1| TPA: ubiquitin protein ligase E3 component n-recognin 5 [Bos taurus]
Length = 2798
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2419 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2450
>gi|15147337|ref|NP_056986.2| E3 ubiquitin-protein ligase UBR5 [Homo sapiens]
gi|20137621|sp|O95071.2|UBR5_HUMAN RecName: Full=E3 ubiquitin-protein ligase UBR5; AltName: Full=E3
ubiquitin-protein ligase, HECT domain-containing 1;
AltName: Full=Hyperplastic discs protein homolog;
Short=hHYD; AltName: Full=Progestin-induced protein
gi|15029597|gb|AAD01259.2| progestin induced protein [Homo sapiens]
gi|187951631|gb|AAI37235.1| Ubiquitin protein ligase E3 component n-recognin 5 [Homo sapiens]
Length = 2799
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2419 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2450
>gi|73974204|ref|XP_532290.2| PREDICTED: E3 ubiquitin-protein ligase UBR5 isoform 1 [Canis lupus
familiaris]
Length = 2798
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2419 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2450
>gi|403299932|ref|XP_003940725.1| PREDICTED: E3 ubiquitin-protein ligase UBR5 [Saimiri boliviensis
boliviensis]
Length = 2799
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2419 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2450
>gi|395818120|ref|XP_003782485.1| PREDICTED: E3 ubiquitin-protein ligase UBR5 isoform 1 [Otolemur
garnettii]
Length = 2798
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2419 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2450
>gi|390476106|ref|XP_002759366.2| PREDICTED: E3 ubiquitin-protein ligase UBR5 [Callithrix jacchus]
Length = 2788
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2409 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2440
>gi|380799029|gb|AFE71390.1| E3 ubiquitin-protein ligase UBR5, partial [Macaca mulatta]
Length = 2497
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2117 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2148
>gi|345326581|ref|XP_001508746.2| PREDICTED: E3 ubiquitin-protein ligase UBR5 [Ornithorhynchus
anatinus]
Length = 2577
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2198 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2229
>gi|168273114|dbj|BAG10396.1| E3 ubiquitin-protein ligase EDD1 [synthetic construct]
Length = 2798
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2419 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2450
>gi|148676853|gb|EDL08800.1| mCG3530 [Mus musculus]
Length = 2820
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2441 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2472
>gi|326917966|ref|XP_003205264.1| PREDICTED: LOW QUALITY PROTEIN: e3 ubiquitin-protein ligase UBR5-like
[Meleagris gallopavo]
Length = 2827
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2448 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2479
>gi|363731030|ref|XP_003640895.1| PREDICTED: E3 ubiquitin-protein ligase UBR5-like [Gallus gallus]
Length = 2787
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2408 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2439
>gi|354484405|ref|XP_003504378.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR5-like
[Cricetulus griseus]
Length = 2774
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2395 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2426
>gi|351712113|gb|EHB15032.1| E3 ubiquitin-protein ligase UBR5, partial [Heterocephalus glaber]
Length = 2774
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2395 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2426
>gi|163310751|ref|NP_001074828.2| E3 ubiquitin-protein ligase UBR5 isoform 1 [Mus musculus]
Length = 2798
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2419 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2450
>gi|380799027|gb|AFE71389.1| E3 ubiquitin-protein ligase UBR5, partial [Macaca mulatta]
Length = 2513
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2133 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2164
>gi|426360423|ref|XP_004047442.1| PREDICTED: E3 ubiquitin-protein ligase UBR5 [Gorilla gorilla gorilla]
Length = 2553
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2173 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2204
>gi|332830972|ref|XP_003311934.1| PREDICTED: E3 ubiquitin-protein ligase UBR5 [Pan troglodytes]
Length = 2295
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 1915 MLLELSPAQLLLLLASEDSLRARVDEAMELII 1946
>gi|441647848|ref|XP_003255970.2| PREDICTED: E3 ubiquitin-protein ligase UBR5 [Nomascus leucogenys]
Length = 2553
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2173 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2204
>gi|34785416|gb|AAH57458.1| Ubiquitin protein ligase E3 component n-recognin 5 [Mus musculus]
Length = 543
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 164 MLLELSPAQLLLLLASEDSLRARVDEAMELII 195
>gi|28972453|dbj|BAC65680.1| mKIAA0896 protein [Mus musculus]
Length = 1765
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 1386 MLLELSPAQLLLLLASEDSLRARVDEAMELII 1417
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 38.5 bits (88), Expect = 0.58, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSE 42
MLLE+ ++L LL S +AL+ KV EAMD++ N+S +++ +
Sbjct: 605 MLLEMDQTEVLHLLESPDALKAKVAEAMDVLRNVSQPNVADQ 646
>gi|74267844|gb|AAI03026.1| UBR5 protein [Bos taurus]
Length = 600
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 221 MLLELSPAQLLLLLASEDSLRARVDEAMELII 252
>gi|90081840|dbj|BAE90201.1| unnamed protein product [Macaca fascicularis]
Length = 392
Score = 38.5 bits (88), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 12 MLLELSPAQLLLLLASEDSLRARVDEAMELII 43
>gi|344253462|gb|EGW09566.1| E3 ubiquitin-protein ligase UBR5 [Cricetulus griseus]
Length = 380
Score = 38.5 bits (88), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 1 MLLELSPAQLLLLLASEDSLRARVDEAMELII 32
>gi|7673357|gb|AAF66824.1|AF190656_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 330
Score = 38.1 bits (87), Expect = 0.60, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSS 41
MLLE+ ++L LL S EAL+ KV EAM+++ N+S S+
Sbjct: 274 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVSQQQSSN 314
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 38.1 bits (87), Expect = 0.60, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSS 41
MLLE+ ++L LL S EAL+ KV EAM+++ N+S S+
Sbjct: 587 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVSQQQSSN 627
>gi|350583014|ref|XP_003481418.1| PREDICTED: E3 ubiquitin-protein ligase UBR5-like [Sus scrofa]
Length = 1742
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 1362 MLLELSPAQLLLLLASEDSLRARVDEAMELII 1393
>gi|355727516|gb|AES09223.1| ubiquitin protein ligase E3 component n-recognin 5 [Mustela putorius
furo]
Length = 1372
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 993 MLLELSPAQLLLLLASEDSLRARVDEAMELII 1024
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 38.1 bits (87), Expect = 0.61, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNL----SGHDLSSENL 44
MLLE+ ++L LL S EAL+ KV EAMD++ ++ S L+S NL
Sbjct: 602 MLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVAAGGSAEQLASLNL 649
>gi|119612251|gb|EAW91845.1| E3 ubiquitin protein ligase, HECT domain containing, 1, isoform CRA_c
[Homo sapiens]
Length = 1647
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 1267 MLLELSPAQLLLLLASEDSLRARVDEAMELII 1298
>gi|37046904|gb|AAH57923.1| Ubr5 protein [Mus musculus]
Length = 451
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 72 MLLELSPAQLLLLLASEDSLRARVDEAMELII 103
>gi|193785589|dbj|BAG51024.1| unnamed protein product [Homo sapiens]
Length = 473
Score = 38.1 bits (87), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 93 MLLELSPAQLLLLLASEDSLRARVDEAMELII 124
>gi|349604911|gb|AEQ00329.1| E3 ubiquitin-protein ligase UBR5-like protein, partial [Equus
caballus]
Length = 402
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 122 MLLELSPAQLLLLLASEDSLRARVDEAMELII 153
>gi|29351627|gb|AAH49162.1| Ubr5 protein [Mus musculus]
Length = 1501
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 1122 MLLELSPAQLLLLLASEDSLRARVDEAMELII 1153
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 38.1 bits (87), Expect = 0.67, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSS 41
MLLE+ ++L LL S EAL+ KV EAM+++ N+S S+
Sbjct: 593 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVSQQQSSN 633
>gi|413954516|gb|AFW87165.1| hypothetical protein ZEAMMB73_979278 [Zea mays]
gi|414865260|tpg|DAA43817.1| TPA: hypothetical protein ZEAMMB73_808082 [Zea mays]
Length = 643
Score = 38.1 bits (87), Expect = 0.75, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ A++L LL S EALR KV EAM ++
Sbjct: 556 MLLEMDKAEILQLLRSPEALRAKVREAMAVL 586
>gi|148539604|ref|NP_001091917.1| polyA-binding protein [Strongylocentrotus purpuratus]
gi|126722149|emb|CAM57104.1| polyA-binding protein [Strongylocentrotus purpuratus]
Length = 640
Score = 38.1 bits (87), Expect = 0.76, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMN 33
MLLE+ ++LL +L EAL +KVEEA+ ++MN
Sbjct: 591 MLLEIDNSELLHMLEVQEALEKKVEEAVQVLMN 623
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 38.1 bits (87), Expect = 0.77, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 31/45 (68%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLL 45
MLLE+ ++LL++L S E+L KVEEA+ ++ +L++ N+L
Sbjct: 567 MLLEIDNSELLLMLESPESLNAKVEEALAVLQAHQATELTAVNVL 611
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 37.7 bits (86), Expect = 0.81, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLS 35
MLLE+ ++L LL S +AL+ KV EAMD++ N++
Sbjct: 607 MLLEMDQTEVLHLLESPDALKSKVAEAMDVLRNVA 641
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 37.7 bits (86), Expect = 0.95, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLS 35
MLLE+ ++L LL S +AL+ KV EAMD++ N++
Sbjct: 603 MLLEMDQTEVLHLLESPDALKSKVAEAMDVLHNVA 637
>gi|302785327|ref|XP_002974435.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
gi|300158033|gb|EFJ24657.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
Length = 642
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMN 33
MLLE+ ++L L+ S EAL+ KV EAMD++ N
Sbjct: 606 MLLEMDQTEVLHLIESPEALKAKVAEAMDVLRN 638
>gi|302808075|ref|XP_002985732.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
gi|300146641|gb|EFJ13310.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
Length = 635
Score = 37.4 bits (85), Expect = 1.0, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMN 33
MLLE+ ++L L+ S EAL+ KV EAMD++ N
Sbjct: 599 MLLEMDQTEVLHLIESPEALKAKVAEAMDVLRN 631
>gi|413918856|gb|AFW58788.1| hypothetical protein ZEAMMB73_448418 [Zea mays]
Length = 212
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLS 35
MLLE+ ++L LL S +AL+ KV EAMD++ N++
Sbjct: 155 MLLEMDQTEVLHLLESPDALKSKVAEAMDVLRNVA 189
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLLGS 47
MLLE+ ++L L+ S +AL+ KV EAMD++ N++ + + L S
Sbjct: 597 MLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQTNPADQLAS 643
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSG----HDLSSENL 44
MLLE+ ++L LL S EAL+ KV EAMD++ +++ L+S NL
Sbjct: 565 MLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVAAGGATEQLASLNL 612
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSG----HDLSSENL 44
MLLE+ ++L LL S EAL+ KV EAMD++ +++ L+S NL
Sbjct: 581 MLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVAAGGATEQLASLNL 628
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLLGS 47
MLLE+ ++L L+ S +AL+ KV EAMD++ N++ + + L S
Sbjct: 599 MLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQTNPADQLAS 645
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLL 45
MLLE+ ++LL++L S E+L KVEEA+ ++ +L+ N+L
Sbjct: 572 MLLEIDNSELLLMLESPESLNAKVEEALAVLQAHQAAELTKVNVL 616
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNL----SGHDLSSENL 44
MLLE+ ++L LL S EAL+ KV EAMD++ ++ + L+S NL
Sbjct: 577 MLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVAAGGAAEQLASLNL 624
>gi|393905825|gb|EJD74081.1| E3 ubiquitin-protein ligase UBR5 [Loa loa]
Length = 2900
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 9/50 (18%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLLGSSDG 50
MLL+L P QL+ +LAS+E LR +VEEA +++ LGS DG
Sbjct: 2517 MLLDLQPHQLITILASEELLRAQVEEASEMIQAAG---------LGSGDG 2557
>gi|14278480|pdb|1I2T|A Chain A, X-Ray Structure Of The Human Hyperplastic Discs Protein:
An Ortholog Of The C-Terminal Domain Of Poly(A)-Binding
Protein
Length = 61
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 31/32 (96%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 27 MLLELSPAQLLLLLASEDSLRARVDEAMELII 58
>gi|359495203|ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
[Vitis vinifera]
Length = 1093
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV-MNLSGHDLSSENLLGS 47
MLLE+ ++L L+ S +AL+ KV EAMD++ + SG+D+ + LGS
Sbjct: 1043 MLLEMDQTEVLHLIESPDALKNKVAEAMDVLRASSSGNDVGDQ--LGS 1088
>gi|168053933|ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 650
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLLGS 47
MLLE+ ++L L+ S EALR KV EAMD++ ++ + LG+
Sbjct: 597 MLLEMDQTEVLHLIESPEALRAKVAEAMDVLRMAQAAPVAPTDELGN 643
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLS 35
MLLE+ ++L LL S EAL+ KV EAM+++ N++
Sbjct: 594 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVA 628
>gi|312095065|ref|XP_003148237.1| hypothetical protein LOAG_12677 [Loa loa]
Length = 384
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 9/50 (18%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLLGSSDG 50
MLL+L P QL+ +LAS+E LR +VEEA +++ LGS DG
Sbjct: 1 MLLDLQPHQLITILASEELLRAQVEEASEMIQAAG---------LGSGDG 41
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLS 35
MLLE+ ++L LL S EAL+ KV EAM+++ N++
Sbjct: 598 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVA 632
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 37.4 bits (85), Expect = 1.2, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDI 30
MLLE+ +LL LL DEALR KV+EA+ +
Sbjct: 689 MLLEMDNTELLSLLEDDEALRAKVDEALSV 718
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 37.0 bits (84), Expect = 1.3, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLL 45
MLLE+ ++LL++L S E+L KVEEA+ ++ +L+ N+L
Sbjct: 567 MLLEIDNSELLLMLESPESLNAKVEEALAVLQAHQATELAKVNVL 611
>gi|312089118|ref|XP_003146124.1| hypothetical protein LOAG_10552 [Loa loa]
Length = 1178
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 9/50 (18%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLLGSSDG 50
MLL+L P QL+ +LAS+E LR +VEEA +++ LGS DG
Sbjct: 1100 MLLDLQPHQLITILASEELLRAQVEEASEMIQAAG---------LGSGDG 1140
>gi|242096254|ref|XP_002438617.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
gi|241916840|gb|EER89984.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
Length = 631
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ ++L LL S E LR KV EAMD++
Sbjct: 563 MLLEMDKVKILQLLQSPEVLRAKVREAMDVL 593
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSE 42
MLLE+ A+LLMLL S EAL KV+EA+ + L H++ +E
Sbjct: 594 MLLEMDNAELLMLLESHEALVSKVDEAIAV---LKQHNVIAE 632
>gi|324499599|gb|ADY39831.1| E3 ubiquitin-protein ligase UBR5 [Ascaris suum]
Length = 3083
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLL+L P QL+ ++AS++ LR VEEA D++M
Sbjct: 2701 MLLDLQPHQLITIVASEDLLRSHVEEAADMLM 2732
>gi|302142289|emb|CBI19492.3| unnamed protein product [Vitis vinifera]
Length = 153
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSS 41
MLLE+ + L LL S EAL+ KV EAMD++ N++ +S
Sbjct: 97 MLLEMGQTEFLHLLESPEALKSKVAEAMDVLRNVAQQQANS 137
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLS 35
MLLE+ ++L LL S EAL KV EA+D++ N++
Sbjct: 593 MLLEMDQTEVLHLLESPEALNAKVSEALDVLRNVN 627
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLS 35
MLLE+ ++L LL S EAL KV EA+D++ N++
Sbjct: 600 MLLEMDQTEVLHLLESPEALNAKVSEALDVLRNVN 634
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLS 35
MLLE+ ++L LL S EAL KV EA+D++ N++
Sbjct: 600 MLLEMDQTEVLHLLESPEALNAKVSEALDVLRNVN 634
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 36.6 bits (83), Expect = 1.8, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDI 30
MLLE+ +LL LL DEALR KV+EA+ +
Sbjct: 672 MLLEMDNTELLGLLEDDEALRAKVDEALSV 701
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNL 34
MLLE+ ++L LL S EAL+ KV EAM+++ N+
Sbjct: 594 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV 627
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 36.6 bits (83), Expect = 1.9, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLS 35
MLLE+ ++L LL S EAL+ KV EAMD++ +++
Sbjct: 615 MLLEMDQTEVLHLLESPEALKAKVTEAMDVLRSVA 649
>gi|402591899|gb|EJW85828.1| hypothetical protein WUBG_03261 [Wuchereria bancrofti]
Length = 1591
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
MLL+L P QL+ +LAS+E LR +VEEA +++
Sbjct: 1314 MLLDLQPHQLITILASEELLRAQVEEASEMIQ 1345
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 36.6 bits (83), Expect = 2.0, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLS 35
MLLE+ ++L LL S EAL+ KV EAMD++ +++
Sbjct: 613 MLLEMDQTEVLHLLESPEALKAKVTEAMDVLRSVA 647
>gi|2935338|gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSE 42
MLLE+ A+LLMLL S EAL KV+EA+ + L H++ +E
Sbjct: 581 MLLEMDNAELLMLLESHEALVSKVDEAIAV---LKQHNVIAE 619
>gi|425772940|gb|EKV11320.1| Polyadenylate-binding protein [Penicillium digitatum PHI26]
gi|425781989|gb|EKV19920.1| Polyadenylate-binding protein [Penicillium digitatum Pd1]
Length = 736
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 24/30 (80%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDI 30
MLLE+ A+LL LL +EALR KV+EA+++
Sbjct: 675 MLLEMDNAELLGLLDDEEALRGKVDEALNV 704
>gi|449501704|ref|XP_004161443.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
2-like [Cucumis sativus]
Length = 576
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNL 34
MLLE+ ++L LL S EAL+ KV EAM+++ N+
Sbjct: 516 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV 549
>gi|255940906|ref|XP_002561222.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585845|emb|CAP93573.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 734
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 24/30 (80%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDI 30
MLLE+ A+LL LL +EALR KV+EA+++
Sbjct: 673 MLLEMDNAELLGLLDDEEALRGKVDEALNV 702
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 36.2 bits (82), Expect = 2.3, Method: Composition-based stats.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ A+LLMLL S EAL KV+EA+ ++
Sbjct: 578 MLLEMDNAELLMLLESHEALVAKVDEAIAVL 608
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 36.2 bits (82), Expect = 2.4, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLLGS---SDGID 52
MLLE+ ++L LL S EAL+ KV EAM+++ +++ ++ + L S +D +D
Sbjct: 594 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQSGNAADQLASLSLTDNLD 648
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLLGS---SDGID 52
MLLE+ ++L LL S EAL+ KV EAM+++ +++ ++ + L S +D +D
Sbjct: 594 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAQQSGNAADQLASLSLTDNLD 648
>gi|147785105|emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera]
Length = 632
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV-MNLSGHDLSSENLLGS 47
MLLE+ ++L L+ S +AL+ KV EAMD++ + SG+D+ + LGS
Sbjct: 582 MLLEMDQTEVLHLIESPDALKNKVAEAMDVLRASSSGNDVGDQ--LGS 627
>gi|294892363|ref|XP_002774026.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239879230|gb|EER05842.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 636
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 26/33 (78%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMN 33
M+LE+ ++LLML+ SD+ LR K++EA+ ++ +
Sbjct: 604 MMLEMDNSELLMLIDSDQQLRMKIDEAVRVLQH 636
>gi|118486179|gb|ABK94932.1| unknown [Populus trichocarpa]
Length = 408
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLLGS 47
MLLE+ ++L LL S EAL+ KV EAM+++ + + + L S
Sbjct: 353 MLLEMDQTEVLHLLESPEALKSKVNEAMEVLRTVQQQATGTADQLAS 399
>gi|297739370|emb|CBI29360.3| unnamed protein product [Vitis vinifera]
Length = 633
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV-MNLSGHDLSSENLLGS 47
MLLE+ ++L L+ S +AL+ KV EAMD++ + SG+D+ + LGS
Sbjct: 583 MLLEMDQTEVLHLIESPDALKNKVAEAMDVLRASSSGNDVGDQ--LGS 628
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 36.2 bits (82), Expect = 2.7, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ ++L L+ S EAL+ KV EAMD++
Sbjct: 592 MLLEMDQTEVLHLIESPEALKAKVAEAMDVL 622
>gi|7673359|gb|AAF66825.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 479
Score = 36.2 bits (82), Expect = 2.8, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNL 34
MLLE+ ++L LL S EAL+ KV EAM+++ N+
Sbjct: 425 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV 458
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 36.2 bits (82), Expect = 2.9, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNL 34
MLLE+ ++L LL S EAL+ KV EAM+++ N+
Sbjct: 603 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNV 636
>gi|224105583|ref|XP_002313862.1| predicted protein [Populus trichocarpa]
gi|222850270|gb|EEE87817.1| predicted protein [Populus trichocarpa]
Length = 642
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLLGS 47
MLLE+ ++L LL S EAL+ KV EAM+++ + + + L S
Sbjct: 587 MLLEMDQTEVLHLLESPEALKSKVNEAMEVLRTVQQQATGTADQLAS 633
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSS 41
MLLE+ ++L L+ S EAL+ KV EA+D++ N++ +S
Sbjct: 566 MLLEMDQPEVLHLIESPEALKTKVAEAVDVLRNVAQQQSNS 606
>gi|357154719|ref|XP_003576878.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 653
Score = 35.8 bits (81), Expect = 3.4, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLLGS 47
MLLE+ ++L LL S +AL+ KV EAM+++ + + S E L S
Sbjct: 596 MLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQHTNPSPEQQLAS 642
>gi|302142288|emb|CBI19491.3| unnamed protein product [Vitis vinifera]
Length = 61
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSS 41
MLLE+ ++L LL S EAL+ KV EAMD++ N++ +S
Sbjct: 5 MLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVAQQQANS 45
>gi|327271804|ref|XP_003220677.1| PREDICTED: embryonic polyadenylate-binding protein-like [Anolis
carolinensis]
Length = 635
Score = 35.8 bits (81), Expect = 3.5, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV----MNLSGHDLSSENLL 45
MLLE+ ++LL++L S E+L K+EEA+ ++ M+ S H +S L
Sbjct: 586 MLLEIDNSELLLMLESPESLHSKIEEAVAVLQVHQMSESSHKSASTAFL 634
>gi|224060514|ref|XP_002300227.1| predicted protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| predicted protein [Populus trichocarpa]
Length = 644
Score = 35.8 bits (81), Expect = 3.6, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLLGS 47
MLLE+ ++L LL S EAL+ KV EAM+++ + + + L S
Sbjct: 589 MLLEMDQTEVLHLLESPEALKAKVNEAMEVLRTVQQQATGTADQLAS 635
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 35.4 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ A++L +L S EAL KV+EA+D++
Sbjct: 582 MLLEIENAEVLHMLESKEALDSKVQEAIDVL 612
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 35.4 bits (80), Expect = 4.0, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 26/35 (74%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLS 35
MLLE+ ++L L+ S +AL+ KV EAM+++ N+S
Sbjct: 594 MLLEMDQPEVLHLIESPDALKAKVAEAMEVLRNVS 628
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 35.4 bits (80), Expect = 4.4, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSE 42
MLLE+ ++LL +L S E+LR KVEEA+ + L H E
Sbjct: 566 MLLEIDNSELLHMLESPESLRSKVEEAVAV---LQAHQAKKE 604
>gi|358334962|dbj|GAA31742.2| polyadenylate-binding protein, partial [Clonorchis sinensis]
Length = 738
Score = 35.4 bits (80), Expect = 5.0, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVM---NLSGHDLSSENLLGSSDGIDIHSS 56
MLL + A+++ LL S E+LR K+EE + ++ NL +L+ E L S+DG+ + SS
Sbjct: 647 MLLGVDNAEVIHLLESKESLRAKLEEGISVLKTSRNLPP-ELAEEAHLSSADGLAMGSS 704
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 35.4 bits (80), Expect = 5.0, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSE 42
MLLE+ ++LL +L S E+LR KVEEA+ + L H E
Sbjct: 580 MLLEIDNSELLHMLESPESLRSKVEEAVAV---LQAHQAKKE 618
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 35.4 bits (80), Expect = 5.0, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDI 30
MLLE+ +LL LL D+ALR KV+EA+ +
Sbjct: 691 MLLEMDNTELLGLLEDDDALRAKVDEALSV 720
>gi|1737492|gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum]
Length = 651
Score = 35.0 bits (79), Expect = 5.0, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGH-DLSSENLLGS---SDGI 51
MLLE+ ++L LL S +AL+ KV EAM+++ + H + S E L S +DG+
Sbjct: 594 MLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQHTNQSPEQQLASLSLNDGL 648
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 35.0 bits (79), Expect = 5.1, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSE 42
MLLE+ ++LL +L S E+LR KVEEA+ + L H E
Sbjct: 586 MLLEIDNSELLHMLESPESLRSKVEEAVAV---LQAHQAKKE 624
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ ++LL +L S E+LR KVEEA+ ++
Sbjct: 583 MLLEIDNSELLHMLESPESLRAKVEEAVAVL 613
>gi|106879567|emb|CAJ38367.1| polyA-binding protein [Plantago major]
Length = 314
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNL 34
MLLE+ ++L LL S +AL+ KV EAM+++ N+
Sbjct: 258 MLLEMDQTEVLHLLESPDALKSKVNEAMEVLRNV 291
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 35.0 bits (79), Expect = 5.6, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSE 42
MLLE+ ++LL +L S E+LR KVEEA+ + L H E
Sbjct: 580 MLLEIDNSELLHMLESPESLRSKVEEAVAV---LQAHQAKKE 618
>gi|308486599|ref|XP_003105496.1| CRE-PAB-2 protein [Caenorhabditis remanei]
gi|308255462|gb|EFO99414.1| CRE-PAB-2 protein [Caenorhabditis remanei]
Length = 730
Score = 35.0 bits (79), Expect = 5.6, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMN 33
M+LE+ A+L+M+L ++ R KVEEA ++ N
Sbjct: 683 MMLEIDNAELIMMLQDEDLFRSKVEEAFTVLSN 715
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 35.0 bits (79), Expect = 5.6, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSE 42
MLLE+ ++LL +L S E+LR KVEEA+ + L H E
Sbjct: 580 MLLEIDNSELLHMLESPESLRSKVEEAVAV---LQAHQAKKE 618
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 35.0 bits (79), Expect = 5.7, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGH 37
MLLE+ ++L LL S EAL+ KV EAM+++ +++
Sbjct: 601 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSVAAQ 637
>gi|147863287|emb|CAN82615.1| hypothetical protein VITISV_036127 [Vitis vinifera]
Length = 88
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSS 41
MLLE+ + L LL S EAL+ KV +AMD++ N++ +S
Sbjct: 32 MLLEMGQTEFLHLLESPEALKSKVAKAMDVLRNVAQQQANS 72
>gi|3287682|gb|AAC25510.1| Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from
A. thaliana [Arabidopsis thaliana]
Length = 655
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV---MNLSGHDL 39
MLLE+ A++L L+ S EAL+ KV EA+D++ ++ + HDL
Sbjct: 608 MLLEMDQAEILHLMESPEALKSKVSEALDVLRLSVDPTDHDL 649
>gi|15219945|ref|NP_173690.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
gi|12643628|sp|O64380.1|PABP3_ARATH RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3
gi|2505869|emb|CAA72907.1| polyA binding protein PAB3 [Arabidopsis thaliana]
gi|15450820|gb|AAK96681.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
gi|332192163|gb|AEE30284.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
Length = 660
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV---MNLSGHDL 39
MLLE+ A++L L+ S EAL+ KV EA+D++ ++ + HDL
Sbjct: 613 MLLEMDQAEILHLMESPEALKSKVSEALDVLRLSVDPTDHDL 654
>gi|9930616|gb|AAG02117.1|AF293840_1 poly(A) binding protein [Arabidopsis thaliana]
Length = 660
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV---MNLSGHDL 39
MLLE+ A++L L+ S EAL+ KV EA+D++ ++ + HDL
Sbjct: 613 MLLEMDQAEILHLMESPEALKSKVSEALDVLRLSVDPTDHDL 654
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 35.0 bits (79), Expect = 6.1, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDI 30
MLLE+ +LL L +D+ALR+KV+EA+++
Sbjct: 701 MLLEMDNEELLGLTTNDDALREKVQEALNV 730
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 35.0 bits (79), Expect = 6.1, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSE 42
MLLE+ ++LL +L S E+LR KVEEA+ + L H E
Sbjct: 579 MLLEIDNSELLHMLESPESLRSKVEEAVAV---LQAHQAKKE 617
>gi|326516828|dbj|BAJ96406.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 744
Score = 35.0 bits (79), Expect = 6.2, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGH-DLSSENLLGS---SDGI 51
MLLE+ ++L LL S +AL+ KV EAM++ + H + S E L S +DG+
Sbjct: 687 MLLEMDQTEVLHLLESPDALKAKVAEAMEVFRSAQQHTNQSPEQQLASLSLNDGL 741
>gi|414588972|tpg|DAA39543.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 246
Score = 35.0 bits (79), Expect = 6.5, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV---MNLSGHDLSSENLLGS---SDGI 51
MLLE+ ++L LL S +AL+ KV EAM+++ +L ++S+E L + +DG+
Sbjct: 187 MLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQHLQQSNVSTEQQLANLSLNDGV 243
>gi|297741250|emb|CBI32381.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 35.0 bits (79), Expect = 6.5, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNL 34
MLLE+ ++L LL S +AL+ KV EAM+++ N+
Sbjct: 714 MLLEMDQTEVLHLLESPDALKAKVAEAMEVLRNV 747
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 34.7 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV---MNLSGHDLSSENLLGS---SDGI 51
MLLE+ ++L LL S +AL+ KV EAM+++ +L ++S+E L + +DG+
Sbjct: 595 MLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQHLQQSNVSTEQQLANLSLNDGV 651
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 34.7 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDI----VMNLSG 36
MLLE+ +LL L D+ALR KV+EAM++ V N SG
Sbjct: 731 MLLEMDNHELLGLTTDDDALRAKVDEAMNVYEEYVKNQSG 770
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 34.7 bits (78), Expect = 6.8, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 31/50 (62%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLLGSSDG 50
MLLE+ ++LL +L S E+LR KV+EA+ ++ +++ + S+ G
Sbjct: 579 MLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEVAQKPATNSTAG 628
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 34.7 bits (78), Expect = 7.0, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGH 37
MLLE+ ++L LL S EAL+ KV EAM+++ ++
Sbjct: 594 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRTVAAQ 630
>gi|225428865|ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147839912|emb|CAN65906.1| hypothetical protein VITISV_004873 [Vitis vinifera]
Length = 648
Score = 34.7 bits (78), Expect = 7.0, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNL 34
MLLE+ ++L LL S +AL+ KV EAM+++ N+
Sbjct: 596 MLLEMDQTEVLHLLESPDALKAKVAEAMEVLRNV 629
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 34.7 bits (78), Expect = 7.1, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV---MNLSGHDLSSENLLGS---SDGI 51
MLLE+ ++L LL S +AL+ KV EAM+++ +L ++S+E L + +DG+
Sbjct: 589 MLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQHLQQSNVSTEQQLANLSLNDGV 645
>gi|323448247|gb|EGB04148.1| hypothetical protein AURANDRAFT_70409 [Aureococcus anophagefferens]
Length = 616
Score = 34.7 bits (78), Expect = 7.1, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ ++LL LL S +ALR KV EA++++
Sbjct: 570 MLLEMDNSELLHLLESPDALRMKVAEALEVL 600
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 34.7 bits (78), Expect = 7.3, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGH 37
MLLE+ ++L LL S EAL+ KV EAM+++ ++
Sbjct: 575 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRTVAAQ 611
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 34.7 bits (78), Expect = 8.0, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNL 34
MLLE+ ++L LL S EAL+ KV EAM+++ ++
Sbjct: 588 MLLEMDQTEVLHLLESPEALKAKVAEAMEVLRSV 621
>gi|23197794|gb|AAN15424.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
Length = 379
Score = 34.7 bits (78), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 3/42 (7%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV---MNLSGHDL 39
MLLE+ A++L L+ S EAL+ KV EA+D++ ++ + HDL
Sbjct: 332 MLLEMDQAEILHLMESPEALKSKVSEALDVLRLSVDPTDHDL 373
>gi|60099898|gb|AAX13083.1| hyperplastic discs [Drosophila miranda]
gi|60099900|gb|AAX13084.1| hyperplastic discs [Drosophila miranda]
gi|60099902|gb|AAX13085.1| hyperplastic discs [Drosophila miranda]
gi|60099904|gb|AAX13086.1| hyperplastic discs [Drosophila miranda]
gi|60099906|gb|AAX13087.1| hyperplastic discs [Drosophila miranda]
gi|60099908|gb|AAX13088.1| hyperplastic discs [Drosophila miranda]
gi|60099914|gb|AAX13091.1| hyperplastic discs [Drosophila miranda]
gi|60099916|gb|AAX13092.1| hyperplastic discs [Drosophila miranda]
gi|60099918|gb|AAX13093.1| hyperplastic discs [Drosophila miranda]
Length = 301
Score = 34.3 bits (77), Expect = 9.0, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 9 QLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSEN 43
QLL +L+SDE LRQKV EA++I+ + S+N
Sbjct: 2 QLLSVLSSDETLRQKVNEAIEIITFKQKSESCSQN 36
>gi|334183839|ref|NP_177322.2| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|334183841|ref|NP_001185373.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|322510110|sp|Q05196.3|PABP5_ARATH RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|332197109|gb|AEE35230.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|332197110|gb|AEE35231.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
Length = 682
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ A++L LL S EAL+ KV EA+D++
Sbjct: 630 MLLEMDQAEILHLLESPEALKAKVSEALDVL 660
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ A++L LL S EAL+ KV EA+D++
Sbjct: 616 MLLEMDQAEILHLLESPEALKAKVSEALDVL 646
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 34.3 bits (77), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ A++L LL S EAL+ KV EA+D++
Sbjct: 616 MLLEMDQAEILHLLESPEALKAKVSEALDVL 646
>gi|449016981|dbj|BAM80383.1| polyadenylate-binding protein [Cyanidioschyzon merolae strain 10D]
Length = 999
Score = 34.3 bits (77), Expect = 9.6, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 26/31 (83%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
MLLE+ +++L L+ S EAL++KVEEA++++
Sbjct: 938 MLLEMDNSEVLHLVESPEALQEKVEEALEVL 968
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.130 0.330
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 832,243,927
Number of Sequences: 23463169
Number of extensions: 23122709
Number of successful extensions: 67809
Number of sequences better than 100.0: 268
Number of HSP's better than 100.0 without gapping: 247
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 67560
Number of HSP's gapped (non-prelim): 270
length of query: 65
length of database: 8,064,228,071
effective HSP length: 37
effective length of query: 28
effective length of database: 7,196,090,818
effective search space: 201490542904
effective search space used: 201490542904
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 69 (31.2 bits)