BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12139
         (65 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q62671|UBR5_RAT E3 ubiquitin-protein ligase UBR5 OS=Rattus norvegicus GN=Ubr5 PE=1
            SV=3
          Length = 2788

 Score = 40.0 bits (92), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 22/32 (68%), Positives = 31/32 (96%)

Query: 1    MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
            MLLELSPAQLL+LLAS+++LR +VEEAM++++
Sbjct: 2409 MLLELSPAQLLLLLASEDSLRARVEEAMELIV 2440


>sp|P51592|HYD_DROME E3 ubiquitin-protein ligase hyd OS=Drosophila melanogaster GN=hyd
            PE=1 SV=3
          Length = 2885

 Score = 39.7 bits (91), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/31 (58%), Positives = 25/31 (80%)

Query: 1    MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
            MLLE+   QLL +++SDE LRQKV EA++I+
Sbjct: 2526 MLLEIPTPQLLSVISSDETLRQKVNEAIEII 2556


>sp|Q80TP3|UBR5_MOUSE E3 ubiquitin-protein ligase UBR5 OS=Mus musculus GN=Ubr5 PE=1 SV=2
          Length = 2792

 Score = 38.5 bits (88), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 31/32 (96%)

Query: 1    MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
            MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2413 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2444


>sp|O95071|UBR5_HUMAN E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens GN=UBR5 PE=1 SV=2
          Length = 2799

 Score = 38.5 bits (88), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 31/32 (96%)

Query: 1    MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
            MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 2419 MLLELSPAQLLLLLASEDSLRARVDEAMELII 2450


>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
           PE=1 SV=1
          Length = 629

 Score = 37.4 bits (85), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 4/48 (8%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSG----HDLSSENL 44
           MLLE+   ++L LL S EAL+ KV EAMD++ +++       L+S NL
Sbjct: 581 MLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVAAGGATEQLASLNL 628


>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
           OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
           GN=pab1 PE=3 SV=1
          Length = 753

 Score = 37.4 bits (85), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 22/30 (73%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDI 30
           MLLE+   +LL LL  DEALR KV+EA+ +
Sbjct: 689 MLLEMDNTELLSLLEDDEALRAKVDEALSV 718


>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
           OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
           CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
          Length = 732

 Score = 36.6 bits (83), Expect = 0.044,   Method: Composition-based stats.
 Identities = 17/30 (56%), Positives = 22/30 (73%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDI 30
           MLLE+   +LL LL  DEALR KV+EA+ +
Sbjct: 672 MLLEMDNTELLGLLEDDEALRAKVDEALSV 701


>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
           OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
           DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
          Length = 754

 Score = 35.4 bits (80), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/30 (53%), Positives = 22/30 (73%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDI 30
           MLLE+   +LL LL  D+ALR KV+EA+ +
Sbjct: 691 MLLEMDNTELLGLLEDDDALRAKVDEALSV 720


>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
           PE=2 SV=1
          Length = 660

 Score = 35.0 bits (79), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 30/42 (71%), Gaps = 3/42 (7%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDIV---MNLSGHDL 39
           MLLE+  A++L L+ S EAL+ KV EA+D++   ++ + HDL
Sbjct: 613 MLLEMDQAEILHLMESPEALKSKVSEALDVLRLSVDPTDHDL 654


>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
           PE=1 SV=3
          Length = 682

 Score = 34.3 bits (77), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 24/31 (77%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
           MLLE+  A++L LL S EAL+ KV EA+D++
Sbjct: 630 MLLEMDQAEILHLLESPEALKAKVSEALDVL 660


>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
          Length = 631

 Score = 34.3 bits (77), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLLGSSDGI 51
           MLLE+  ++LL +L S E+LR KV+EA+ ++      + +++  + S+ G+
Sbjct: 579 MLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAKE-ATQKAVNSATGV 628


>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
          Length = 636

 Score = 33.9 bits (76), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLLGSSDGI 51
           MLLE+  ++LL +L S E+LR KV+EA+ ++      + +++  + S+ G+
Sbjct: 584 MLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKE-AAQKAVNSATGV 633


>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
          Length = 636

 Score = 33.9 bits (76), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLLGSSDGI 51
           MLLE+  ++LL +L S E+LR KV+EA+ ++      + +++  + S+ G+
Sbjct: 584 MLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKE-AAQKAVNSATGV 633


>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
          Length = 636

 Score = 33.9 bits (76), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLLGSSDGI 51
           MLLE+  ++LL +L S E+LR KV+EA+ ++      + +++  + S+ G+
Sbjct: 584 MLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKE-AAQKAVNSATGV 633


>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
          Length = 636

 Score = 33.9 bits (76), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLLGSSDGI 51
           MLLE+  ++LL +L S E+LR KV+EA+ ++      + +++  + S+ G+
Sbjct: 584 MLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKE-AAQKAVNSATGV 633


>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
           PE=2 SV=1
          Length = 633

 Score = 33.9 bits (76), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 24/31 (77%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
           MLLE+  ++LL +L S E+LR KV+EA+ ++
Sbjct: 582 MLLEIDNSELLHMLESPESLRSKVDEAVAVL 612


>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
           PE=1 SV=3
          Length = 633

 Score = 33.9 bits (76), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 24/31 (77%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
           MLLE+  ++LL +L S E+LR KV+EA+ ++
Sbjct: 582 MLLEIDNSELLHMLESPESLRSKVDEAVAVL 612


>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
           SV=1
          Length = 636

 Score = 33.9 bits (76), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 24/31 (77%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
           MLLE+  ++LL +L S E+LR KV+EA+ ++
Sbjct: 584 MLLEIDNSELLHMLESPESLRSKVDEAVAVL 614


>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
          Length = 644

 Score = 33.5 bits (75), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 24/31 (77%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
           MLLE+  ++LL +L S E+LR KV+EA+ ++
Sbjct: 593 MLLEIDNSELLHMLESPESLRSKVDEAVAVL 623


>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
           OS=Cryptococcus neoformans var. neoformans serotype D
           (strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
          Length = 673

 Score = 33.5 bits (75), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 24/31 (77%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
           MLLE+  A+LL L+ S  AL++KV+EA+ ++
Sbjct: 611 MLLEMDNAELLHLVESQPALQEKVDEALRVL 641


>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
           OS=Cryptococcus neoformans var. neoformans serotype D
           (strain B-3501A) GN=PAB1 PE=3 SV=1
          Length = 673

 Score = 33.5 bits (75), Expect = 0.43,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 24/31 (77%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
           MLLE+  A+LL L+ S  AL++KV+EA+ ++
Sbjct: 611 MLLEMDNAELLHLVESQPALQEKVDEALRVL 641


>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
           OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
          Length = 768

 Score = 33.1 bits (74), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 22/30 (73%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDI 30
           MLLE+  A+LL L+  D AL+ KV+EA+ +
Sbjct: 704 MLLEMDNAELLALVDDDAALKAKVDEALTV 733


>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
           OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
           FGSC 10173) GN=PAB1 PE=3 SV=3
          Length = 744

 Score = 33.1 bits (74), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 22/30 (73%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDI 30
           MLLE+  ++L+ L A + ALR KV+EAM +
Sbjct: 689 MLLEMDNSELINLTADESALRAKVDEAMSV 718


>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
           GN=epabp PE=2 SV=1
          Length = 629

 Score = 32.7 bits (73), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 23/31 (74%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
           MLLE+  ++LL +L S E+L  KVEEA+ ++
Sbjct: 581 MLLEIDNSELLHMLESPESLHSKVEEAVAVL 611


>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
           GN=epabp-b PE=2 SV=1
          Length = 629

 Score = 32.7 bits (73), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 23/31 (74%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
           MLLE+  ++LL +L S E+L  KVEEA+ ++
Sbjct: 581 MLLEIDNSELLHMLESPESLHSKVEEAVAVL 611


>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
           PE=1 SV=3
          Length = 634

 Score = 32.3 bits (72), Expect = 0.78,   Method: Composition-based stats.
 Identities = 14/31 (45%), Positives = 23/31 (74%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
           MLLE+  ++LL ++   EAL+ KVEEA+ ++
Sbjct: 594 MLLEIENSELLHMIEDQEALKAKVEEAVAVL 624


>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
           GN=epabp-a PE=1 SV=2
          Length = 629

 Score = 32.3 bits (72), Expect = 0.80,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 23/31 (74%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
           MLLE+  ++LL +L S E+L  KVEEA+ ++
Sbjct: 581 MLLEIDNSELLHMLESPESLHSKVEEAVAVL 611


>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
           OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
           FGSC 8958) GN=PAB1 PE=3 SV=1
          Length = 762

 Score = 32.0 bits (71), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 22/30 (73%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDI 30
           MLLE+   +L+ L+ +D ALR KV+EA+ +
Sbjct: 706 MLLEMDNTELVALVENDGALRSKVDEALAV 735


>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
           PE=2 SV=1
          Length = 614

 Score = 31.6 bits (70), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 24/31 (77%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDIV 31
           MLLE+  ++LL++L S E+L  K++EA+ ++
Sbjct: 570 MLLEIDNSELLLMLESPESLHAKIDEAVAVL 600


>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
           OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
           DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
           SV=1
          Length = 592

 Score = 31.6 bits (70), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAM 28
           M+L+L P Q++ LL +DE   Q+ +EA+
Sbjct: 551 MILDLPPQQVIQLLDNDEQFEQQFQEAL 578


>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
           gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
           NRRL Y-1056) GN=PAB1 PE=3 SV=1
          Length = 585

 Score = 31.2 bits (69), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 19/27 (70%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEA 27
           M+L+L P Q++ LL +DE L Q  +EA
Sbjct: 532 MILDLPPQQVIQLLENDELLEQHFQEA 558


>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
           OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
           CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
          Length = 764

 Score = 30.8 bits (68), Expect = 2.6,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDI 30
           MLLE+  A+L+ L   D AL  KV+EA+ +
Sbjct: 699 MLLEMDNAELINLFEDDNALNVKVQEALAV 728


>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
           OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
           DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
          Length = 783

 Score = 30.0 bits (66), Expect = 4.1,   Method: Composition-based stats.
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDI 30
           MLLE+  A+L+ LL  + AL  KV EAM +
Sbjct: 718 MLLEMDNAELVNLLEDEAALVAKVNEAMAV 747


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.312    0.130    0.330 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,183,098
Number of Sequences: 539616
Number of extensions: 570890
Number of successful extensions: 1872
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1834
Number of HSP's gapped (non-prelim): 41
length of query: 65
length of database: 191,569,459
effective HSP length: 37
effective length of query: 28
effective length of database: 171,603,667
effective search space: 4804902676
effective search space used: 4804902676
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)