Query psy12139
Match_columns 65
No_of_seqs 106 out of 238
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 19:42:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12139.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12139hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i2t_A HYD protein; four alpha 99.5 3.2E-15 1.1E-19 89.1 3.7 35 1-35 27-61 (61)
2 1ifw_A Polyadenylate-binding p 99.5 4.4E-15 1.5E-19 94.6 4.2 37 1-37 48-84 (92)
3 3kuj_A Polyadenylate-binding p 99.5 8.8E-15 3E-19 92.4 3.7 39 1-39 46-84 (88)
4 2dyd_A Poly(A)-binding protein 99.5 3.3E-15 1.1E-19 94.1 0.8 37 1-37 48-84 (85)
5 1g9l_A Polyadenylate-binding p 99.5 2.3E-14 7.8E-19 97.2 3.9 39 1-39 92-130 (144)
6 1nmr_A Poly(A)-binding protein 99.5 7.7E-15 2.6E-19 92.4 1.2 36 1-36 49-84 (85)
7 2wx3_A MRNA-decapping enzyme 1 54.4 6.5 0.00022 22.4 1.7 21 8-28 18-38 (51)
8 2wx4_A DCP1, decapping protein 45.3 6.4 0.00022 22.0 0.6 21 8-28 16-36 (46)
9 2guz_B Mitochondrial import in 37.6 26 0.00089 19.8 2.5 16 19-34 44-59 (65)
10 2q5c_A NTRC family transcripti 33.1 35 0.0012 22.3 2.9 23 13-35 165-188 (196)
11 3onk_A Epsin-3, ENT3; helix, p 30.0 56 0.0019 21.2 3.5 22 8-29 121-142 (150)
12 2jee_A YIIU; FTSZ, septum, coi 29.2 43 0.0015 20.3 2.6 15 18-32 9-23 (81)
13 2pju_A Propionate catabolism o 28.4 41 0.0014 22.8 2.7 24 13-36 177-200 (225)
14 2b8i_A PAS factor; four helix 27.8 48 0.0017 20.1 2.6 19 14-32 58-76 (77)
15 2guz_A Mitochondrial import in 25.3 47 0.0016 18.3 2.1 15 20-34 53-67 (71)
16 1eyh_A Epsin; superhelix of he 24.0 1.2E+02 0.0041 19.4 4.2 27 8-34 114-140 (144)
No 1
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=99.54 E-value=3.2e-15 Score=89.13 Aligned_cols=35 Identities=60% Similarity=0.967 Sum_probs=33.8
Q ss_pred CcCCCCHHHHHHhhcCHHHHHHHHHHHHHHHHHhh
Q psy12139 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLS 35 (65)
Q Consensus 1 MLLEmdnsElL~LLes~e~L~~KV~EA~~VL~~~~ 35 (65)
|||||||+|+|+||+||++|++||+||++||++|+
T Consensus 27 MLLE~d~~ell~ll~~~e~L~~kv~EA~~vl~~~~ 61 (61)
T 1i2t_A 27 MLLELSPAQLLLLLASEDSLRARVDEAMELIIAHG 61 (61)
T ss_dssp HHTTSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCCHHHHHHHHcCHHHHHHHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999874
No 2
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=99.54 E-value=4.4e-15 Score=94.60 Aligned_cols=37 Identities=32% Similarity=0.492 Sum_probs=35.5
Q ss_pred CcCCCCHHHHHHhhcCHHHHHHHHHHHHHHHHHhhcC
Q psy12139 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGH 37 (65)
Q Consensus 1 MLLEmdnsElL~LLes~e~L~~KV~EA~~VL~~~~~~ 37 (65)
|||||||+|||+||+||++|++||+||++||++|++.
T Consensus 48 MLLEmd~~ElL~LLes~e~L~~kV~EA~~vL~~~~~~ 84 (92)
T 1ifw_A 48 MILDLPPQEVFPLLESDELFEQHYKEASAAYESFKKE 84 (92)
T ss_dssp HHTTSCHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999853
No 3
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=99.51 E-value=8.8e-15 Score=92.44 Aligned_cols=39 Identities=38% Similarity=0.606 Sum_probs=36.0
Q ss_pred CcCCCCHHHHHHhhcCHHHHHHHHHHHHHHHHHhhcCCC
Q psy12139 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDL 39 (65)
Q Consensus 1 MLLEmdnsElL~LLes~e~L~~KV~EA~~VL~~~~~~~~ 39 (65)
|||||||+|+++||+||++|++||+||++||+.|+.++.
T Consensus 46 MLLEmd~~Ell~lle~~e~L~~kV~EA~~vL~~~~~~~~ 84 (88)
T 3kuj_A 46 MLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 84 (88)
T ss_dssp HHTTSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 899999999999999999999999999999999987663
No 4
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=99.49 E-value=3.3e-15 Score=94.09 Aligned_cols=37 Identities=43% Similarity=0.672 Sum_probs=35.3
Q ss_pred CcCCCCHHHHHHhhcCHHHHHHHHHHHHHHHHHhhcC
Q psy12139 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGH 37 (65)
Q Consensus 1 MLLEmdnsElL~LLes~e~L~~KV~EA~~VL~~~~~~ 37 (65)
|||||||+|||+||+||++|++||+||++||++|+++
T Consensus 48 MLLEmd~~Ell~Lles~e~L~~kv~EA~~vL~~~~~~ 84 (85)
T 2dyd_A 48 MLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQH 84 (85)
T ss_dssp HHHHHCHHHHHHHTTCSHHHHHHHHHHHHHHTSCSSC
T ss_pred hhhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999999999999998754
No 5
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=99.47 E-value=2.3e-14 Score=97.20 Aligned_cols=39 Identities=38% Similarity=0.606 Sum_probs=36.6
Q ss_pred CcCCCCHHHHHHhhcCHHHHHHHHHHHHHHHHHhhcCCC
Q psy12139 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDL 39 (65)
Q Consensus 1 MLLEmdnsElL~LLes~e~L~~KV~EA~~VL~~~~~~~~ 39 (65)
|||||||+|||+||+|+++|++||+||++||++|++++.
T Consensus 92 MLLEmd~~ElL~LLes~e~L~~kV~EA~~vL~~~~~~~~ 130 (144)
T 1g9l_A 92 MLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 130 (144)
T ss_dssp HTTTSSSHHHHHHHHCTTHHHHHHHHHHHHHHTTSSSTT
T ss_pred hhccCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhccc
Confidence 899999999999999999999999999999999986543
No 6
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=99.47 E-value=7.7e-15 Score=92.38 Aligned_cols=36 Identities=33% Similarity=0.510 Sum_probs=34.5
Q ss_pred CcCCCCHHHHHHhhcCHHHHHHHHHHHHHHHHHhhc
Q psy12139 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSG 36 (65)
Q Consensus 1 MLLEmdnsElL~LLes~e~L~~KV~EA~~VL~~~~~ 36 (65)
|||||||+|+|+||+||++|++||+||++||++|++
T Consensus 49 MLLEmd~~ElL~Lle~~e~L~~kV~EA~~vL~~~~~ 84 (85)
T 1nmr_A 49 MLLEMDNGEILNLLDTPGLLDAKVQEALEVLNRHMN 84 (85)
T ss_dssp HCSCTHHHHHHTTCCTHHHHHHHHHHHHHHTTCCCC
T ss_pred hHhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHhhc
Confidence 899999999999999999999999999999998863
No 7
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=54.38 E-value=6.5 Score=22.37 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=18.7
Q ss_pred HHHHHhhcCHHHHHHHHHHHH
Q psy12139 8 AQLLMLLASDEALRQKVEEAM 28 (65)
Q Consensus 8 sElL~LLes~e~L~~KV~EA~ 28 (65)
+-+++||.+++.+-.++.||+
T Consensus 18 qaLihLIqnD~~Fl~~IHeAY 38 (51)
T 2wx3_A 18 DTLIHLIKNDSSFLSTLHEVY 38 (51)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHH
Confidence 457899999999999999986
No 8
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=45.29 E-value=6.4 Score=22.00 Aligned_cols=21 Identities=19% Similarity=0.388 Sum_probs=18.4
Q ss_pred HHHHHhhcCHHHHHHHHHHHH
Q psy12139 8 AQLLMLLASDEALRQKVEEAM 28 (65)
Q Consensus 8 sElL~LLes~e~L~~KV~EA~ 28 (65)
+-++|||.+++.+-.|+.||.
T Consensus 16 qal~hLiknD~~Fl~~iHeAY 36 (46)
T 2wx4_A 16 QAFTYLIQNDKEFANKLHKAY 36 (46)
T ss_dssp HHHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHH
Confidence 457899999999999999986
No 9
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=37.57 E-value=26 Score=19.83 Aligned_cols=16 Identities=25% Similarity=0.081 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHh
Q psy12139 19 ALRQKVEEAMDIVMNL 34 (65)
Q Consensus 19 ~L~~KV~EA~~VL~~~ 34 (65)
-|.+||++|-++|..+
T Consensus 44 yl~~ki~~Ake~l~~~ 59 (65)
T 2guz_B 44 YLQSKVYRAAERLKWE 59 (65)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5789999999999764
No 10
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=33.05 E-value=35 Score=22.26 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=19.7
Q ss_pred hhcC-HHHHHHHHHHHHHHHHHhh
Q psy12139 13 LLAS-DEALRQKVEEAMDIVMNLS 35 (65)
Q Consensus 13 LLes-~e~L~~KV~EA~~VL~~~~ 35 (65)
++.| .+++++-++||+.+++...
T Consensus 165 li~sg~eSI~~Ai~eA~~l~~~~~ 188 (196)
T 2q5c_A 165 TINSGEESLRRAIEEALNLIEVRN 188 (196)
T ss_dssp ECCCCHHHHHHHHHHHHHHHHHHC
T ss_pred EEecCHHHHHHHHHHHHHHHHHHH
Confidence 4566 9999999999999998754
No 11
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=30.05 E-value=56 Score=21.23 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=18.6
Q ss_pred HHHHHhhcCHHHHHHHHHHHHH
Q psy12139 8 AQLLMLLASDEALRQKVEEAMD 29 (65)
Q Consensus 8 sElL~LLes~e~L~~KV~EA~~ 29 (65)
.+|+.||+|++.|++.=..|-.
T Consensus 121 k~l~~LL~D~e~L~~eR~ka~~ 142 (150)
T 3onk_A 121 KALIELLSDDNKIRAERKKARE 142 (150)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHHHH
Confidence 6899999999999987777654
No 12
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=29.21 E-value=43 Score=20.31 Aligned_cols=15 Identities=40% Similarity=0.643 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy12139 18 EALRQKVEEAMDIVM 32 (65)
Q Consensus 18 e~L~~KV~EA~~VL~ 32 (65)
+.|.+||++|++.+.
T Consensus 9 eqLE~KIq~avdtI~ 23 (81)
T 2jee_A 9 EKLEAKVQQAIDTIT 23 (81)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 578899999999553
No 13
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=28.36 E-value=41 Score=22.81 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=19.8
Q ss_pred hhcCHHHHHHHHHHHHHHHHHhhc
Q psy12139 13 LLASDEALRQKVEEAMDIVMNLSG 36 (65)
Q Consensus 13 LLes~e~L~~KV~EA~~VL~~~~~ 36 (65)
++.|.++.+.-++||+.+++....
T Consensus 177 lI~s~eSI~~Ai~eA~~l~~~~r~ 200 (225)
T 2pju_A 177 FIYSAATVRQAFSDALDMTRMSLR 200 (225)
T ss_dssp ESSCHHHHHHHHHHHHHHHHHC--
T ss_pred EECCHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999997543
No 14
>2b8i_A PAS factor; four helix bundle, lipid binding protein; 1.80A {Vibrio vulnificus}
Probab=27.82 E-value=48 Score=20.15 Aligned_cols=19 Identities=21% Similarity=0.452 Sum_probs=17.1
Q ss_pred hcCHHHHHHHHHHHHHHHH
Q psy12139 14 LASDEALRQKVEEAMDIVM 32 (65)
Q Consensus 14 Les~e~L~~KV~EA~~VL~ 32 (65)
|++++.+..-|+-|+++|.
T Consensus 58 Le~~~~idnAV~sA~~iLe 76 (77)
T 2b8i_A 58 LENHEAISNAVDSVVQLLE 76 (77)
T ss_dssp CCSHHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHhc
Confidence 7899999999999999874
No 15
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=25.26 E-value=47 Score=18.27 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHh
Q psy12139 20 LRQKVEEAMDIVMNL 34 (65)
Q Consensus 20 L~~KV~EA~~VL~~~ 34 (65)
.-.+|++|.++|...
T Consensus 53 ~f~~i~~Aye~L~~~ 67 (71)
T 2guz_A 53 LATKINEAKDFLEKR 67 (71)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 457899999999875
No 16
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=23.97 E-value=1.2e+02 Score=19.36 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=21.7
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHh
Q psy12139 8 AQLLMLLASDEALRQKVEEAMDIVMNL 34 (65)
Q Consensus 8 sElL~LLes~e~L~~KV~EA~~VL~~~ 34 (65)
.+|+.||.|++.|++.=+.|...=..+
T Consensus 114 k~l~~Ll~D~~~L~~eR~~a~~~r~k~ 140 (144)
T 1eyh_A 114 KQLVALLRDEDRLREERAHALKTKEKL 140 (144)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 579999999999999888777654444
Done!