RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12139
(65 letters)
>gnl|CDD|201378 pfam00658, PABP, Poly-adenylate binding protein, unique domain.
The region featured in this family is found towards the
C-terminus of poly(A)-binding proteins (PABPs). These
are eukaryotic proteins that, through their binding of
the 3' poly(A) tail on mRNA, have very important roles
in the pathways of gene expression. They seem to
provide a scaffold on which other proteins can bind and
mediate processes such as export, translation and
turnover of the transcripts. Moreover, they may act as
antagonists to the binding of factors that allow mRNA
degradation, regulating mRNA longevity. PABPs are also
involved in nuclear transport. PABPs interact with
poly(A) tails via RNA-recognition motifs (pfam00076).
Note that the PABP C-terminal region is also found in
members of the hyperplastic discs protein (HYD) family
of ubiquitin ligases that contain HECT domains - these
are also included in this family.
Length = 72
Score = 44.5 bits (106), Expect = 3e-08
Identities = 17/30 (56%), Positives = 24/30 (80%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDI 30
MLLE+ ++LL LL SDEAL+ KV+EA+ +
Sbjct: 42 MLLEMDNSELLHLLESDEALKAKVDEALAV 71
>gnl|CDD|197769 smart00517, PolyA, C-terminal domain of Poly(A)-binding protein.
Present also in Drosophila hyperplastics discs protein.
Involved in homodimerisation (either directly or
indirectly).
Length = 64
Score = 44.2 bits (105), Expect = 4e-08
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDI 30
MLLE+ ++LL LL S E LR KV+EA+++
Sbjct: 31 MLLEMDNSELLHLLESPELLRAKVDEALEV 60
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1,
2, 3, 4 family. These eukaryotic proteins recognize the
poly-A of mRNA and consists of four tandem RNA
recognition domains at the N-terminus (rrm: pfam00076)
followed by a PABP-specific domain (pfam00658) at the
C-terminus. The protein is involved in the transport of
mRNA's from the nucleus to the cytoplasm. There are four
paralogs in Homo sapiens which are expressed in testis
(GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ),
broadly expressed (SP:P11940_PABP1) and of unknown
tissue range (SP:Q15097_PABP2).
Length = 562
Score = 39.0 bits (91), Expect = 4e-05
Identities = 15/30 (50%), Positives = 23/30 (76%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDI 30
MLLE+ ++LL LL S E L+ KV+EA+++
Sbjct: 531 MLLEMDNSELLHLLESPELLKSKVDEALEV 560
>gnl|CDD|237087 PRK12391, PRK12391, tryptophan synthase subunit beta; Reviewed.
Length = 427
Score = 31.7 bits (73), Expect = 0.011
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Query: 15 ASDEALRQKVE-EAMDIVMNLSGH---DLSS 41
A DEAL+ K E E I+ NLSGH DL++
Sbjct: 390 AIDEALKAKEEGEEKVILFNLSGHGLLDLAA 420
>gnl|CDD|185749 cd09236, V_AnPalA_UmRIM20_like, Protein-interacting V-domains of
Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20,
and related proteins. This family belongs to the
V_Alix_like superfamily which includes the V-shaped (V)
domains of Bro1 and Rim20 from Saccharomyces cerevisiae,
mammalian Alix (apoptosis-linked gene-2 interacting
protein X), His-Domain type N23 protein tyrosine
phosphatase (HD-PTP, also known as PTPN23), and related
domains. Aspergillus nidulas PalA/RIM20 and Ustilago
maydis RIM20, like Saccharomyces cerevisiae Rim20,
participate in the response to the external pH via the
Pal/Rim101 pathway; however, Saccharomyces cerevisiae
Rim20 does not belong to this family. This pathway is a
signaling cascade resulting in the activation of the
transcription factor PacC/Rim101. The mammalian Alix
V-domain (belonging to a different family) contains a
binding site, partially conserved in the superfamily,
for the retroviral late assembly (L) domain YPXnL motif.
Aspergillus nidulas PalA binds a nonviral YPXnL motif
(tandem YPXL/I motifs within PacC). The Alix V-domain is
also a dimerization domain. In addition to this
V-domain, members of the V_Alix_like superfamily also
have an N-terminal Bro1-like domain, which has been
shown to bind CHMP4/Snf7, a component of the ESCRT-III
complex.
Length = 353
Score = 26.9 bits (60), Expect = 0.59
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 15 ASDEALRQKVEEAMDIVMNLSGHDLSSENLLGSSDGIDIHSSTV 58
ASDE +R+K++E D++ L+G + EN + SS I
Sbjct: 148 ASDELVRRKLDEWEDLIQILTGDERDLENFVPSSRRPSIPPELE 191
>gnl|CDD|222493 pfam14010, PEPcase_2, Phosphoenolpyruvate carboxylase. This family
of phosphoenolpyruvate carboxylases is based on
seqeunces not picked up by the model for PEPcase,
PF00311. Most of the family members are from Archaea.
Length = 476
Score = 26.4 bits (59), Expect = 0.89
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 14 LASDEALRQKVEEAMDIVMNLSGHDLSSENLL 45
L DE ++++E +D + + H LL
Sbjct: 419 LYLDEETVKEIKEDIDYLEDYEEHRELYSLLL 450
>gnl|CDD|221299 pfam11897, DUF3417, Protein of unknown function (DUF3417). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and archaea. Proteins
in this family are typically between 145 to 860 amino
acids in length. This protein is found associated with
pfam00343. This protein has a conserved AYF sequence
motif.
Length = 119
Score = 26.0 bits (58), Expect = 1.0
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMD 29
+L E+S + L LA+D + +
Sbjct: 55 LLGEVSQER-LEELAADPEFLARYDRVAA 82
>gnl|CDD|238368 cd00717, URO-D, Uroporphyrinogen decarboxylase (URO-D) is a dimeric
cytosolic enzyme that decarboxylates the four acetate
side chains of uroporphyrinogen III (uro-III) to create
coproporphyrinogen III, without requiring any prosthetic
groups or cofactors. This reaction is located at the
branching point of the tetrapyrrole biosynthetic
pathway, leading to the biosynthesis of heme,
chlorophyll or bacteriochlorophyll. URO-D deficiency is
responsible for the human genetic diseases familial
porphyria cutanea tarda (fPCT) and hepatoerythropoietic
porphyria (HEP).
Length = 335
Score = 26.0 bits (58), Expect = 1.4
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 12 MLLASDEALRQKVEEAMDIVMNLSGH 37
+L A EA+ ++V+ + GH
Sbjct: 284 LLYAPKEAIEKEVKRILKAFGGAPGH 309
>gnl|CDD|224269 COG1350, COG1350, Predicted alternative tryptophan synthase
beta-subunit (paralog of TrpB) [General function
prediction only].
Length = 432
Score = 25.8 bits (57), Expect = 1.4
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 14 LASDEALRQKVE-EAMDIVMNLSGHDL 39
A DEAL+ + E E I+ NLSGH L
Sbjct: 390 AAIDEALKAREEGEEKVILFNLSGHGL 416
>gnl|CDD|233403 TIGR01415, trpB_rel, pyridoxal-phosphate dependent TrpB-like
enzyme. This model represents a family of
pyridoxal-phosphate dependent enzyme (pfam00291) closely
related to the beta subunit of tryptophan synthase
(TIGR00263). However, the only case in which a member of
this family replaces a member of TIGR00263 is in
Sulfolobus species which contain two sequences which hit
this model, one of which is proximal to the alpha
subunit. In every other case so far, either the species
appears not to make tryptophan (there is no trp synthase
alpha subunit), or a trp synthase beta subunit matching
TIGR00263 is also found [Unknown function, Enzymes of
unknown specificity].
Length = 419
Score = 25.9 bits (57), Expect = 1.6
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 14 LASDEALRQKVE-EAMDIVMNLSGHDL 39
A DEA + + E I+ NLSGH L
Sbjct: 380 AAIDEARKCRETGEEKVILFNLSGHGL 406
>gnl|CDD|148337 pfam06675, DUF1177, Protein of unknown function (DUF1177). This
family consists of several hypothetical archaeal and and
bacterial proteins of around 300 residues in length. The
function of this family is unknown.
Length = 276
Score = 25.3 bits (56), Expect = 1.8
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 12 MLLASDEALRQKVEEAMDIVMNLSGHDLSSENLLGSSDGIDIHSSTVK 59
+ D + +V+ MD ++++ D + N + G I + TVK
Sbjct: 106 SPVDLDTMNKHEVDPEMDAILSI---DTTKGNRIIKHRGFAI-TPTVK 149
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil
motif at the N terminus region. Yeast cells with mutant
Atg14 are defective not only in autophagy but also in
sorting of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically
required for the function of Apg6/Vps30p through the
autophagic pathway. There are 17 auto-phagosomal
component proteins which are categorized into six
functional units, one of which is the AS-PI3K complex
(Vps30/Atg6 and Atg14). The AS-PI3K complex and the
Atg2-Atg18 complex are essential for nucleation, and
the specific function of the AS-PI3K apparently is to
produce phosphatidylinositol 3-phosphate (PtdIns(3)P)
at the pre-autophagosomal structure (PAS). The
localisation of this complex at the PAS is controlled
by Atg14. Autophagy mediates the cellular response to
nutrient deprivation, protein aggregation, and pathogen
invasion in humans, and malfunction of autophagy has
been implicated in multiple human diseases including
cancer. This effect seems to be mediated through direct
interaction of the human Atg14 with Beclin 1 in the
human phosphatidylinositol 3-kinase class III complex.
Length = 307
Score = 25.4 bits (56), Expect = 1.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 9 QLLMLLASDEALRQKVEEAMDIVMNLSGH 37
L LL +E L+QKVEEA++ N G
Sbjct: 28 DLARLLLENEELKQKVEEALEGATNEDGK 56
>gnl|CDD|216366 pfam01208, URO-D, Uroporphyrinogen decarboxylase (URO-D).
Length = 338
Score = 25.2 bits (56), Expect = 2.2
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 11/43 (25%)
Query: 5 LSPAQLLMLLASDEALRQKVEEAMD-------IVMNLSGHDLS 40
L PA +LL + E + +V+E ++ + NL GH +
Sbjct: 282 LDPA---LLLGTPEEIEAEVKEILEAGDGGPGHIFNL-GHGIP 320
>gnl|CDD|107371 cd06376, PBP1_mGluR_groupIII, Ligand-binding domain of the group
III metabotropic glutamate receptor. Ligand-binding
domain of the group III metabotropic glutamate receptor,
a family which contains mGlu4R, mGluR6R, mGluR7, and
mGluR8; all of which inhibit adenylyl cyclase. The
metabotropic glutamate receptor is a member of the
family C of G-protein-coupled receptors that transduce
extracellular signals into G-protein activation and
ultimately into intracellular responses. The mGluRs are
classified into three groups which comprise eight
subtypes.
Length = 463
Score = 25.2 bits (55), Expect = 2.8
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 2 LLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDL 39
LLE A+ +++ A+++ +R+ +E A N GH L
Sbjct: 226 LLETPNARAVIIFANEDDIRRVLEAAKR--ANQVGHFL 261
>gnl|CDD|151875 pfam11436, DUF3199, Protein of unknown function (DUF3199). Some
members in this family of proteins with unknown
function are annotated as YqbG however this cannot be
confirmed. Currently the proteins has no known
function.
Length = 124
Score = 24.7 bits (54), Expect = 3.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 16 SDEALRQKVEEAMDIVMNLSGHDLSSE 42
DE L Q + EA ++ ++GHD S E
Sbjct: 21 PDELLTQDILEAEADIIQITGHDFSDE 47
>gnl|CDD|203272 pfam05544, Pro_racemase, Proline racemase. This family consists of
proline racemase (EC 5.1.1.4) proteins which catalyze
the interconversion of L- and D-proline in bacteria.
This family also contains several similar eukaryotic
proteins including a sequence with B-cell mitogenic
properties, which has been characterized as a
co-factor-independent proline racemase.
Length = 325
Score = 25.0 bits (55), Expect = 3.3
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 3 LELSPAQLLMLLASDEALRQKVEEAMDIV 31
+++PA L+A+ +R + E + +V
Sbjct: 177 FDIAPANARELVAAGVKIRDALNEQLKVV 205
>gnl|CDD|215723 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal
domain. The structure of beta-ketoacyl synthase is
similar to that of the thiolase family (pfam00108) and
also chalcone synthase. The active site of
beta-ketoacyl synthase is located between the N and
C-terminal domains. The N-terminal domain contains most
of the structures involved in dimer formation and also
the active site cysteine.
Length = 243
Score = 24.5 bits (54), Expect = 4.0
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 1 MLLELSPAQLLMLLASDEALRQ 22
+ P Q L L A+ EAL
Sbjct: 69 EAEAMDPQQRLALEAAWEALED 90
>gnl|CDD|149006 pfam07707, BACK, BTB And C-terminal Kelch. This domain is found
associated with pfam00651 and pfam01344. The BACK
domain is found juxtaposed to the BTB domain; they are
separated by as little as two residues. This family
appears to be closely related to the BTB domain (Finn
RD, personal observation).
Length = 101
Score = 24.0 bits (53), Expect = 4.8
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 3 LELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSS 41
LELS QLL LL+SDE EE + V+ HD+ +
Sbjct: 38 LELSKEQLLELLSSDELNVPSEEEVFEAVIKWVKHDVEN 76
>gnl|CDD|237190 PRK12755, PRK12755, phospho-2-dehydro-3-deoxyheptonate aldolase;
Provisional.
Length = 353
Score = 24.4 bits (54), Expect = 4.8
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 5 LSPAQLLMLLASDEALRQKVEEAMDIVMN-LSGHD 38
++P +L L EA + +V + + + L G D
Sbjct: 18 ITPEELKAELPLSEAAQAQVAASRQAIADILHGRD 52
>gnl|CDD|226864 COG4457, SrfB, Uncharacterized protein conserved in bacteria,
putative virulence factor [Function unknown].
Length = 1014
Score = 24.4 bits (53), Expect = 4.9
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLLGSSD 49
++L L A M E RQ++EEA+ +V G S E+ S
Sbjct: 466 IILTLPSA---MPKQEREIFRQRMEEAIALVWKSMGWHPSDEDFNTPSK 511
>gnl|CDD|223484 COG0407, HemE, Uroporphyrinogen-III decarboxylase [Coenzyme
metabolism].
Length = 352
Score = 24.5 bits (54), Expect = 5.0
Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 4 ELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLS 40
L PA +L A EA++++V+ ++ + SG+ +
Sbjct: 291 NLDPA---LLYAPPEAIKEEVKRILEDGGDGSGYIFN 324
>gnl|CDD|227205 COG4868, COG4868, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 493
Score = 24.4 bits (53), Expect = 5.3
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 9 QLLMLLASDEALRQKVEEAMDIVMNLSGHDLSSENLLGSSD-------GIDIHSSTV 58
++L+ L+ A + E A+ + NL G + S ++LG D GI++ S V
Sbjct: 428 EILIALSITAATNEMAERALSELGNLKGSEAHSTHILGREDENVLRKLGINVTSDPV 484
>gnl|CDD|211365 cd09254, AP_delta-COPI_MHD, Mu homology domain (MHD) of adaptor
protein (AP) coat protein I (COPI) delta subunit. COPI
complex-coated vesicles function in the early secretory
pathway. They mediate the retrograde transport from the
Golgi to the ER, and intra-Golgi transport. COPI
complex-coated vesicles consist of a small GTPase,
ADP-ribosylation factor 1 (ARF1) and a heteroheptameric
coatomer composed of two subcomplexes, F-COPI and
B-COPI. ARF1 regulates COPI vesicle formation by
recruiting the coatomer onto Golgi membranes to
initiate its coat function. Coatomer complexes then
bind cargo molecules and self-assemble to form
spherical cages that yield COPI-coated vesicles. The
heterotetrameric F-COPI subcomplex contains beta-,
gamma-, delta-, and zeta-COP subunits, where beta- and
gamma-COP subunits are related to the large AP
subunits, and delta- and zeta-COP subunits are related
to the medium and small AP subunits, respectively. Due
to the sequence similarity to the AP complexes, the
F-COPI subcomplex might play a role in the
cargo-binding. The heterotrimeric B-COPI contains
alpha-, beta-, and epsilon-COP subunits, which are not
related to the adaptins. This subcomplex is thought to
participate in the cage-forming and might serve a
function similar to that of clathrin. This family
corresponds to the mu homology domain of delta-subunit
of COPI complex (delta-COP), which is distantly related
to the C-terminal domain of mu chains among AP
complexes. The delta-COP subunit appears tightly
associated with the beta-COP subunit to confer its
interaction with ARF1. In addition, both delta- and
beta-COP subunits contribute to a common binding site
for arginine (R)-based signals, which are sorting
motifs conferring transient endoplasmic reticulum (ER)
localization to unassembled subunits of multimeric
membrane proteins.
Length = 232
Score = 23.7 bits (52), Expect = 6.8
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 15/43 (34%)
Query: 23 KVEEAMDIVMNLSGHDLSSENLLGSSDGIDIHSSTVKGELTLR 65
VEE + + S DG + S VKG L+LR
Sbjct: 6 TVEEKISATL--------------SRDG-GLESLEVKGTLSLR 33
>gnl|CDD|129286 TIGR00182, plsX, fatty acid/phospholipid synthesis protein PlsX.
This protein of fatty acid/phospholipid biosynthesis,
called PlsX after the member in Streptococcus
pneumoniae, is proposed to be a phosphate
acyltransferase that partners with PlsY (TIGR00023) in
a two-step 1-acylglycerol-3-phosphate biosynthesis
pathway alternative to the one-step PlsB (EC 2.3.1.15)
pathway [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 322
Score = 23.9 bits (52), Expect = 7.1
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 9/42 (21%)
Query: 2 LLELSPAQLLMLLASD---------EALRQKVEEAMDIVMNL 34
L+ P + ++ A A+R+KV +M + MNL
Sbjct: 37 HLDKLPKNITIIHAQSVIEMTDTPVRAIRRKVNSSMQLAMNL 78
>gnl|CDD|197943 smart00875, BACK, BTB And C-terminal Kelch. The BACK domain is
found juxtaposed to the BTB domain; they are separated
by as little as two residues.
Length = 101
Score = 23.5 bits (51), Expect = 7.7
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 2 LLELSPAQLLMLLASDEALRQKVEEAMDIVMNLSGHDLSS 41
LEL QLL LL+SD+ EE + V+ HD
Sbjct: 37 FLELPLEQLLELLSSDDLNVSSEEEVFEAVLRWVKHDPEK 76
>gnl|CDD|99995 cd04299, GT1_Glycogen_Phosphorylase_like, This family is most
closely related to the oligosaccharide phosphorylase
domain family and other unidentified sequences.
Oligosaccharide phosphorylase catalyzes the breakdown
of oligosaccharides into glucose-1-phosphate units.
They are important allosteric enzymes in carbohydrate
metabolism. The members of this family are found in
bacteria and Archaea.
Length = 778
Score = 23.7 bits (52), Expect = 7.9
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 1 MLLELSPAQLLMLLASDEALRQKVEEAMD 29
+L E+S +L LA D + + ++
Sbjct: 38 LLGEVSQERL-EELAEDPEFLARYDRVLE 65
>gnl|CDD|218477 pfam05170, AsmA, AsmA family. The AsmA gene, whose product is
involved in the assembly of outer membrane proteins in
Escherichia coli. AsmA mutations were isolated as
extragenic suppressors of an OmpF assembly mutant. AsmA
may have a role in LPS biogenesis.
Length = 537
Score = 23.9 bits (52), Expect = 8.5
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 13 LLASDEALRQKVEEAMDIVMNLSGHDLSSENLLGSSDG 50
L D L ++ +I +LSG S L+ + +G
Sbjct: 448 PLLPDFPLPFPLDGLGNIDADLSGSGNSVAMLIHNLNG 485
>gnl|CDD|234644 PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.
Length = 346
Score = 23.6 bits (52), Expect = 9.0
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 7/33 (21%)
Query: 11 LMLLASDEALRQKVEEAMDI------VMNLSGH 37
+LLA EA+ ++V +D + NL GH
Sbjct: 292 AVLLAPPEAIEEEVRAILDGGGGPGHIFNL-GH 323
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.130 0.330
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,118,272
Number of extensions: 226249
Number of successful extensions: 289
Number of sequences better than 10.0: 1
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 32
Length of query: 65
Length of database: 10,937,602
Length adjustment: 36
Effective length of query: 29
Effective length of database: 9,340,858
Effective search space: 270884882
Effective search space used: 270884882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.2 bits)