RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12139
         (65 letters)



>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 144

 Score = 43.0 bits (101), Expect = 1e-07
 Identities = 15/30 (50%), Positives = 23/30 (76%)

Query: 1   MLLELSPAQLLMLLASDEALRQKVEEAMDI 30
           MLLE+  ++LL +L S E+LR KV+EA+ +
Sbjct: 92  MLLEIDNSELLHMLESPESLRSKVDEAVAV 121


>d1i2ta_ a.144.1.1 (A:) hyperplastic discs protein {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 61

 Score = 38.9 bits (91), Expect = 1e-06
 Identities = 21/32 (65%), Positives = 31/32 (96%)

Query: 1  MLLELSPAQLLMLLASDEALRQKVEEAMDIVM 32
          MLLELSPAQLL+LLAS+++LR +V+EAM++++
Sbjct: 27 MLLELSPAQLLLLLASEDSLRARVDEAMELII 58


>d1ifwa_ a.144.1.1 (A:) poly(A) binding protein {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 92

 Score = 39.4 bits (92), Expect = 1e-06
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 1  MLLELSPAQLLMLLASDEALRQKVEEAMDI 30
          M+L+L P ++  LL SDE   Q  +EA   
Sbjct: 48 MILDLPPQEVFPLLESDELFEQHYKEASAA 77


>d1nmra_ a.144.1.1 (A:) poly(A) binding protein {Protozoan
          (Trypanosoma cruzi) [TaxId: 5693]}
          Length = 85

 Score = 39.0 bits (91), Expect = 2e-06
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 1  MLLELSPAQLLMLLASDEALRQKVEEAMDI 30
          MLLE+   ++L LL +   L  KV+EA+++
Sbjct: 49 MLLEMDNGEILNLLDTPGLLDAKVQEALEV 78


>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus
           scrofa) [TaxId: 9823]}
          Length = 169

 Score = 25.1 bits (54), Expect = 0.58
 Identities = 6/33 (18%), Positives = 18/33 (54%)

Query: 2   LLELSPAQLLMLLASDEALRQKVEEAMDIVMNL 34
           + ++SP +  M+  +   L+  +++  + V N+
Sbjct: 137 IGKISPFEEKMIAEAIPELKASIKKGEEFVKNM 169


>d1a8ra_ d.96.1.1 (A:) GTP cyclohydrolase I {Escherichia coli
          [TaxId: 562]}
          Length = 221

 Score = 23.8 bits (51), Expect = 1.7
 Identities = 7/33 (21%), Positives = 16/33 (48%)

Query: 16 SDEALRQKVEEAMDIVMNLSGHDLSSENLLGSS 48
           +E  +  +   M  +M L   DL+ ++L+ + 
Sbjct: 31 DNETRKSLIAGHMTEIMQLLNLDLADDSLMETP 63


>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase
           {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 168

 Score = 23.3 bits (49), Expect = 3.1
 Identities = 6/28 (21%), Positives = 15/28 (53%)

Query: 3   LELSPAQLLMLLASDEALRQKVEEAMDI 30
           +EL   +++    S E +++  EE  ++
Sbjct: 141 IELDKDEIIAFRKSAEIIKKYCEEVKNL 168


>d1p4da_ d.89.1.5 (A:) F factor TraI relaxase {Escherichia coli
           [TaxId: 562]}
          Length = 307

 Score = 23.0 bits (49), Expect = 3.3
 Identities = 5/23 (21%), Positives = 12/23 (52%)

Query: 10  LLMLLASDEALRQKVEEAMDIVM 32
           ++ +L  D+ L     +A+D  +
Sbjct: 92  MMAMLGGDKRLIDAHNQAVDFAV 114


>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 168

 Score = 22.9 bits (48), Expect = 4.0
 Identities = 5/26 (19%), Positives = 10/26 (38%)

Query: 3   LELSPAQLLMLLASDEALRQKVEEAM 28
           +EL+  +      S   L+  +  A 
Sbjct: 142 IELNDDEKNRFHHSAATLKSVLARAF 167


>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus
           casei [TaxId: 1582]}
          Length = 172

 Score = 22.5 bits (47), Expect = 5.5
 Identities = 4/26 (15%), Positives = 12/26 (46%)

Query: 3   LELSPAQLLMLLASDEALRQKVEEAM 28
           + L+  +   +  S   L++ + +A 
Sbjct: 142 IPLTDHEEESMQKSASQLKKVLTDAF 167


>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus
           pentosus [TaxId: 1589]}
          Length = 171

 Score = 22.1 bits (46), Expect = 8.2
 Identities = 6/31 (19%), Positives = 14/31 (45%)

Query: 3   LELSPAQLLMLLASDEALRQKVEEAMDIVMN 33
             LS  +L  +  S   L++ + + +  + N
Sbjct: 141 SPLSADELKKMQDSAATLKKVLNDGLAELEN 171


>d1xn8a_ a.229.1.1 (A:) Hypothetical protein YqbG {Bacillus
          subtilis [TaxId: 1423]}
          Length = 131

 Score = 21.8 bits (46), Expect = 8.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 16 SDEALRQKVEEAMDIVMNLSGHDLSSE 42
           DE L+Q + EA   ++   GHD S  
Sbjct: 22 PDELLKQDILEATADIILKVGHDFSDA 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.130    0.330 

Gapped
Lambda     K      H
   0.267   0.0686    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 199,891
Number of extensions: 6772
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 13
Length of query: 65
Length of database: 2,407,596
Length adjustment: 34
Effective length of query: 31
Effective length of database: 1,940,776
Effective search space: 60164056
Effective search space used: 60164056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.0 bits)