BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12140
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PT3|A Chain A, Crystal Structure Of The C-Terminal Lobe Of The Human
Ubr5 Hect Domain
pdb|3PT3|B Chain B, Crystal Structure Of The C-Terminal Lobe Of The Human
Ubr5 Hect Domain
Length = 118
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%)
Query: 49 NVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 92
+V +LIS+TSF DESGE +E+L++FKRW WSIVEKM+ ER DL
Sbjct: 5 SVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDL 48
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 37/44 (84%)
Query: 130 NVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 173
+V +LIS+TSF DESGE +E+L++FKRW WSIVEKM+ ER DL
Sbjct: 5 SVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDL 48
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex
pdb|2XBB|B Chain B, Nedd4 Hect:ub Complex
pdb|2XBF|A Chain A, Nedd4 Hect Structure
Length = 386
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 16 AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
A + G F+++P ++ + LL+ G+GD++V +T + ++G + + +
Sbjct: 237 AFKEGFFELIPQDLIKIFDENELELLMCGLGDVDVNDWREHTKY--KNGYSANHQV--IQ 292
Query: 76 WLWSIVEKMTHLERMDL 92
W W V M +R+ L
Sbjct: 293 WFWKAVLMMDSEKRIRL 309
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 97 AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 156
A + G F+++P ++ + LL+ G+GD++V +T + ++G + + +
Sbjct: 237 AFKEGFFELIPQDLIKIFDENELELLMCGLGDVDVNDWREHTKY--KNGYSANHQV--IQ 292
Query: 157 WLWSIVEKMTHLERMDL 173
W W V M +R+ L
Sbjct: 293 WFWKAVLMMDSEKRIRL 309
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State
With 32 A Opening At T112
pdb|3F7V|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State
With 23 A Opening At T112
pdb|3F7Y|C Chain C, Kcsa Potassium Channel In The Partially Open State With
17 A Opening At T112
pdb|3FB5|C Chain C, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|C Chain C, Kcsa Potassium Channel In The Partially Open State With
16 A Opening At T112
pdb|3FB8|C Chain C, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3FB7|C Chain C, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
Length = 104
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 55 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 92
SY + + E G P +LI + R LW VE T + DL
Sbjct: 24 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 61
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 136 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 173
SY + + E G P +LI + R LW VE T + DL
Sbjct: 24 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 61
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|B Chain B, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|C Chain C, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|D Chain D, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|2QTO|A Chain A, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|B Chain B, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|C Chain C, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|D Chain D, An Anisotropic Model For Potassium Channel Kcsa
Length = 97
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 55 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 92
SY + + E G P +LI + R LW VE T + DL
Sbjct: 22 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 59
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 136 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 173
SY + + E G P +LI + R LW VE T + DL
Sbjct: 22 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 59
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 55 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVV 106
SY + + E G P +LI + R LW VE T + DL C + + + VV
Sbjct: 22 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL-CPVTLWGRLVAVV 72
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 136 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 173
SY + + E G P +LI + R LW VE T + DL
Sbjct: 22 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 59
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 55 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVV 106
SY + + E G P +LI + R LW VE T + DL C + + + VV
Sbjct: 23 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL-CPVTLWGRLVAVV 73
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 136 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 173
SY + + E G P +LI + R LW VE T + DL
Sbjct: 23 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 60
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With
Tetrabutylammonium In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With
Tetraoctylammonium
Length = 124
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 55 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 92
SY + + E G P +LI + R LW VE T + DL
Sbjct: 44 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 81
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 136 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 173
SY + + E G P +LI + R LW VE T + DL
Sbjct: 44 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 81
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration
Of K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration
Of Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 55 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 92
SY + + E G P +LI + R LW VE T + DL
Sbjct: 44 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 81
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 136 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 173
SY + + E G P +LI + R LW VE T + DL
Sbjct: 44 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 81
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 55 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 92
SY + + E G P +LI + R LW VE T + DL
Sbjct: 44 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 81
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 136 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 173
SY + + E G P +LI + R LW VE T + DL
Sbjct: 44 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 81
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 55 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 92
SY + + E G P +LI + R LW VE T + DL
Sbjct: 44 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 81
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 136 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 173
SY + + E G P +LI + R LW VE T + DL
Sbjct: 44 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 81
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With
Tetrabutylammonium (Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 55 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 92
SY + + E G P +LI + R LW VE T + DL
Sbjct: 23 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 60
Score = 31.2 bits (69), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 136 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 173
SY + + E G P +LI + R LW VE T + DL
Sbjct: 23 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 60
>pdb|2NLJ|C Chain C, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
Length = 124
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 55 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 92
SY + + E G P +LI + R LW VE T + DL
Sbjct: 44 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 81
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 136 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 173
SY + + E G P +LI + R LW VE T + DL
Sbjct: 44 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 81
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
Length = 124
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 55 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 92
SY + + E G P +LI + R LW VE T + DL
Sbjct: 44 SYLAVLAERGAPGAQLITYPRALWWSVETATCVGYGDL 81
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 136 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 173
SY + + E G P +LI + R LW VE T + DL
Sbjct: 44 SYLAVLAERGAPGAQLITYPRALWWSVETATCVGYGDL 81
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 55 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 92
SY + + E G P +LI + R LW VE T + DL
Sbjct: 44 SYLACLAERGAPGAQLITYPRALWWSVETATTVGYGDL 81
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 136 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 173
SY + + E G P +LI + R LW VE T + DL
Sbjct: 44 SYLACLAERGAPGAQLITYPRALWWSVETATTVGYGDL 81
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 55 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 92
SY + + E G P +LI + R LW V+ T + DL
Sbjct: 23 SYLAVLAERGAPGAQLITYPRALWWSVQTATTVGYGDL 60
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 136 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 173
SY + + E G P +LI + R LW V+ T + DL
Sbjct: 23 SYLAVLAERGAPGAQLITYPRALWWSVQTATTVGYGDL 60
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa
K+ Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa
K+ Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa
K+ Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa
K+ Channel
Length = 166
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 55 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 92
SY + + E G P +LI + R LW VE T + DL
Sbjct: 50 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 87
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 136 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 173
SY + + E G P +LI + R LW VE T + DL
Sbjct: 50 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 87
>pdb|2IH1|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
Length = 122
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 55 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 92
SY + + E G P +LI + R LW E T + DL
Sbjct: 44 SYLAVLAERGAPGAQLITYPRALWWACETATTVXYGDL 81
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 136 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 173
SY + + E G P +LI + R LW E T + DL
Sbjct: 44 SYLAVLAERGAPGAQLITYPRALWWACETATTVXYGDL 81
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State
Length = 124
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 55 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 92
SY + + E G P +LI + R LW V T + DL
Sbjct: 44 SYLAVLAERGAPGAQLITYPRALWWSVHTATTVGYGDL 81
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 136 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 173
SY + + E G P +LI + R LW V T + DL
Sbjct: 44 SYLAVLAERGAPGAQLITYPRALWWSVHTATTVGYGDL 81
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 55 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 92
SY + + E G P +LI + R LW VE T + DL
Sbjct: 23 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 60
Score = 29.6 bits (65), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 136 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 173
SY + + E G P +LI + R LW VE T + DL
Sbjct: 23 SYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDL 60
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant
Length = 103
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 55 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 92
SY + + E G P +LI + R LW V T + DL
Sbjct: 23 SYLAVLAERGAPGAQLITYPRALWWSVSTATTVGYGDL 60
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 136 SYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 173
SY + + E G P +LI + R LW V T + DL
Sbjct: 23 SYLAVLAERGAPGAQLITYPRALWWSVSTATTVGYGDL 60
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By
Anchoring The E2 To The Hect Domain
Length = 380
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 96 IAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFK 155
+A++ G +V+P L+ ++ L++ G+G I+V T + P ++K
Sbjct: 231 LALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVNTRL--KHCTPDSNIVK-- 286
Query: 156 RWLWSIVE 163
W W VE
Sbjct: 287 -WFWKAVE 293
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 16 AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
A++ G +V+P L+ ++ L++ G+G I+V T + P ++K
Sbjct: 232 ALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVNTRL--KHCTPDSNIVK--- 286
Query: 76 WLWSIVE 82
W W VE
Sbjct: 287 WFWKAVE 293
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,481,362
Number of Sequences: 62578
Number of extensions: 219869
Number of successful extensions: 519
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 476
Number of HSP's gapped (non-prelim): 45
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)