Query psy12140
Match_columns 173
No_of_seqs 194 out of 755
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 19:44:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12140.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12140hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5021 HUL4 Ubiquitin-protein 100.0 1.2E-28 2.6E-33 231.5 9.0 132 7-147 714-848 (872)
2 KOG0939|consensus 99.9 3.6E-28 7.8E-33 220.0 7.2 143 7-158 562-706 (720)
3 smart00119 HECTc Domain Homolo 99.9 1.6E-27 3.5E-32 205.1 10.9 146 7-163 183-328 (336)
4 cd00078 HECTc HECT domain; C-t 99.9 5.1E-27 1.1E-31 202.7 10.3 146 7-163 201-346 (352)
5 PF00632 HECT: HECT-domain (ub 99.9 8.6E-25 1.9E-29 185.4 7.4 129 8-146 162-291 (317)
6 KOG0941|consensus 99.9 2.3E-24 5E-29 198.6 7.8 127 7-146 699-825 (850)
7 KOG0942|consensus 99.8 9E-22 1.9E-26 182.6 4.3 127 9-146 849-976 (1001)
8 KOG4427|consensus 99.8 7.1E-20 1.5E-24 167.6 10.2 131 9-148 919-1073(1096)
9 KOG0939|consensus 99.8 2.5E-19 5.4E-24 162.9 6.1 98 66-173 545-642 (720)
10 smart00119 HECTc Domain Homolo 99.7 3.3E-18 7.1E-23 147.4 8.8 99 66-173 166-264 (336)
11 cd00078 HECTc HECT domain; C-t 99.7 4.2E-18 9.1E-23 147.2 8.8 99 66-173 184-282 (352)
12 COG5021 HUL4 Ubiquitin-protein 99.7 3.3E-18 7.1E-23 161.4 7.6 98 66-173 697-795 (872)
13 KOG0942|consensus 99.7 2.2E-17 4.8E-22 153.6 4.7 100 65-173 829-929 (1001)
14 KOG0940|consensus 99.7 6E-17 1.3E-21 140.5 7.0 131 8-148 211-343 (358)
15 KOG4427|consensus 99.6 2.2E-16 4.8E-21 145.0 7.4 98 67-173 901-1000(1096)
16 KOG0941|consensus 99.6 4.9E-16 1.1E-20 143.9 7.8 99 66-173 682-780 (850)
17 KOG0943|consensus 99.6 1.4E-16 3E-21 151.1 2.7 129 10-146 2863-2991(3015)
18 PF00632 HECT: HECT-domain (ub 99.6 5.1E-16 1.1E-20 131.7 6.0 99 66-173 144-243 (317)
19 KOG0170|consensus 99.5 1.9E-14 4.1E-19 127.9 9.6 130 8-146 462-595 (621)
20 KOG0943|consensus 99.3 1.2E-12 2.7E-17 124.8 4.3 80 94-173 2866-2945(3015)
21 KOG0940|consensus 99.1 2.5E-10 5.5E-15 99.3 7.0 97 66-173 194-290 (358)
22 KOG0170|consensus 98.8 1.1E-08 2.3E-13 91.7 5.6 97 68-173 446-543 (621)
23 KOG0085|consensus 59.8 9.9 0.00021 32.2 3.1 47 35-81 37-83 (359)
24 COG2334 Putative homoserine ki 30.9 55 0.0012 28.4 3.3 30 6-41 245-274 (331)
25 COG2204 AtoC Response regulato 22.9 85 0.0018 28.7 3.1 35 5-43 83-117 (464)
26 PRK10702 endonuclease III; Pro 21.9 61 0.0013 26.2 1.8 42 2-46 39-80 (211)
27 PF11660 DUF3262: Protein of u 21.3 1E+02 0.0022 20.9 2.6 42 11-62 3-47 (76)
28 PF04604 L_biotic_typeA: Type- 20.2 72 0.0016 20.3 1.5 18 28-45 10-27 (51)
29 PF13945 NST1: Salt tolerance 20.2 59 0.0013 26.2 1.3 20 151-173 103-122 (190)
No 1
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-28 Score=231.48 Aligned_cols=132 Identities=17% Similarity=0.284 Sum_probs=112.1
Q ss_pred CCcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCC-CCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhc
Q psy12140 7 DGSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGD-INVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMT 85 (173)
Q Consensus 7 ~~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~-idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~ 85 (173)
.-+|++|+.||..||++|||+++|.+|+++|||+||||.++ ||++|||+||.|.|.... .+.|.|||++++++.
T Consensus 714 ~k~ie~Q~~AF~~GF~~ii~~~~i~iF~e~ELe~LI~G~~e~iDidd~K~~T~Y~GY~~~-----s~~I~wFWeii~~f~ 788 (872)
T COG5021 714 NKRVEKQFSAFKSGFSEIIPPDLLQIFDESELELLIGGIPEDIDIDDWKSNTAYHGYTED-----SPIIVWFWEIISEFD 788 (872)
T ss_pred hhhHHHHHHHHHhhHHHhcCHHHHhhcCHHHHHHHHCCCCccccHHHHhhcccccccccC-----CcHHHHHHHHHHHhC
Confidence 45899999999999999999999999999999999999999 999999999999863222 578999999999999
Q ss_pred HHHHHHHHHHHHHhhccccccCchhccCCChhhh--HhhhcCCCCCchhhhhhcceecCCCCCC
Q psy12140 86 HLERMDLGCAIAIRAGIFDVVPASCLENLTPEDF--RLLLNGVGDINVTVLISYTSFIDESGEP 147 (173)
Q Consensus 86 ~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el--~lli~G~~~id~~~lkahT~y~~~~~~~ 147 (173)
.++|++||||+| +.+.||..|++.+++..- ++.|.-.+..+-.+|+||||||..-.++
T Consensus 789 ~eer~klLQFvT----GtsriPi~GFk~L~~~~~~~kf~I~~~g~~~~rLP~ahTCFN~L~LP~ 848 (872)
T COG5021 789 FEERAKLLQFVT----GTSRIPINGFKDLQGSDGVRKFTIEKGGTDDDRLPSAHTCFNRLKLPE 848 (872)
T ss_pred HHHHhhhheecc----CCCCCCCCChhhcCCCcccceeeeecCCCccccCCchhhhhhhccCCC
Confidence 999999999999 688899999999987531 2223323334446999999999875554
No 2
>KOG0939|consensus
Probab=99.95 E-value=3.6e-28 Score=220.01 Aligned_cols=143 Identities=17% Similarity=0.245 Sum_probs=114.3
Q ss_pred CCcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcH
Q psy12140 7 DGSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTH 86 (173)
Q Consensus 7 ~~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~ 86 (173)
+++|++|++||++||+++||..++++|+++|||+|+||.|+|||+|||+||+|.++... ...|+|||++|+++++
T Consensus 562 ~~~ir~ql~afl~Gl~~iip~~li~if~E~ELELLisGlpeidvdd~k~nt~y~~~~~~-----~~~i~wFWrav~sf~~ 636 (720)
T KOG0939|consen 562 TNSIRKQLDAFLAGLHEIIPKVLLSIFDEQELELLISGLPEIDVDDLKANTEYLGYTKA-----SSVIQWFWRAVRSFDQ 636 (720)
T ss_pred HhhHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHcCCCcccHHHHHhhhhhhccccc-----chHHHHHHHHHhhhcH
Confidence 57899999999999999999999999999999999999999999999999999875433 3489999999999999
Q ss_pred HHHHHHHHHHHHhhccccccCchhccCCChhh-h-HhhhcCCCCCchhhhhhcceecCCCCCChhhHHHHHHHH
Q psy12140 87 LERMDLGCAIAIRAGIFDVVPASCLENLTPED-F-RLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWL 158 (173)
Q Consensus 87 ~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~e-l-~lli~G~~~id~~~lkahT~y~~~~~~~~~~~~~~i~wF 158 (173)
++|++||||+| +++-+|.+|+..+.+.. + ++-|.-.+.-.-.+|.+|||||....+..+.-...-+.+
T Consensus 637 eeraklLqFvT----GtSkvP~~GF~~l~g~ng~q~fqi~~~~~s~d~LP~ahTCfnqL~LP~Y~Sye~l~~~L 706 (720)
T KOG0939|consen 637 EERAKLLQFVT----GTSKVPLGGFAALEGMNGVQKFQIHADPGSTDRLPTAHTCFNQLFLPHYASYEQLRESL 706 (720)
T ss_pred HHHHhhHeeec----ccccCCcccccccccCCcceeEEEEeCCCCCCCCcchhhhhhhhcCcchhhHHHHHHHH
Confidence 99999999999 46678999998776631 1 222333332223799999999977655544333344433
No 3
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=99.95 E-value=1.6e-27 Score=205.09 Aligned_cols=146 Identities=24% Similarity=0.344 Sum_probs=121.6
Q ss_pred CCcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcH
Q psy12140 7 DGSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTH 86 (173)
Q Consensus 7 ~~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~ 86 (173)
..+++.|++||++||++|||.++|++|+|+||+.++||.++||+++|++||+|.+++..+ ++.|+|||+++++|++
T Consensus 183 ~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~i~~~~l~~~~~~~~g~~~~----~~~i~~Fw~vl~~~s~ 258 (336)
T smart00119 183 NKGIEKQLEAFREGFSEVIPENLLRLFTPEELELLICGSPEIDVDDLKSNTEYKGGYSEN----SQTIKWFWEVVESFTN 258 (336)
T ss_pred hhhHHHHHHHHHHHHHHHcCHHHhhCCCHHHHHHHhCCCCCCCHHHHhhheEEcCCCCCC----CHHHHHHHHHHHHCCH
Confidence 468999999999999999999999999999999999999999999999999999655432 5789999999999999
Q ss_pred HHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCCCChhhHHHHHHHHHHHHh
Q psy12140 87 LERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVE 163 (173)
Q Consensus 87 ~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~~~~~~~~~~i~wFW~vv~ 163 (173)
++|++||+|+| +++.+|.++++.+.|. +. |...+.-|-.+|.||||||...-+.+.....+.+-+..+++
T Consensus 259 ee~~~fL~F~T----G~~rlP~~G~~~l~~~-~~--i~~~~~~~~~LP~a~TCfn~L~LP~Yss~e~l~~kL~~AI~ 328 (336)
T smart00119 259 EERRKLLQFVT----GSSRLPVGGFAALSPK-FT--IRKAGSDDDRLPTAHTCFNRLKLPPYSSKEILREKLLLAIN 328 (336)
T ss_pred HHHHHhheecc----CCCCCCCCchhhcCCc-eE--EEECCCCCCCCCccccccCcCcCCCCCCHHHHHHHHHHHHH
Confidence 99999999999 5788999999887652 33 33333345689999999998766654444566666666664
No 4
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=99.94 E-value=5.1e-27 Score=202.67 Aligned_cols=146 Identities=22% Similarity=0.322 Sum_probs=119.1
Q ss_pred CCcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcH
Q psy12140 7 DGSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTH 86 (173)
Q Consensus 7 ~~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~ 86 (173)
.+++++|++||++||++|||.++|++|+|+||+.++||.++||+++|++||+|.+++... ++.|+|||+++++|++
T Consensus 201 ~~~~~~~~~afr~Gf~~vip~~~l~~f~~~eL~~lvcG~~~id~~~l~~~~~y~~~~~~~----~~~i~~Fw~vl~~~s~ 276 (352)
T cd00078 201 NKGIEEQVEAFRDGFSEVIPEELLSLFTPEELELLICGSEDIDLEDLKKNTEYKGGYSSD----SPTIQWFWEVLESFTN 276 (352)
T ss_pred cchHHHHHHHHHHHHHHHcCHHhhhCCCHHHHHHHhCCCCCCCHHHHHhceEecCCCCCC----CHHHHHHHHHHHhCCH
Confidence 358999999999999999999999999999999999999999999999999999865422 6789999999999999
Q ss_pred HHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCCCChhhHHHHHHHHHHHHh
Q psy12140 87 LERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVE 163 (173)
Q Consensus 87 ~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~~~~~~~~~~i~wFW~vv~ 163 (173)
++|++||+|+| +++.+|.++++.+.+. +. |.-.+.-+-.+|.||||||...-+.+.....+.+-+..+++
T Consensus 277 eer~~fL~F~T----G~~rlP~~G~~~l~~~-i~--i~~~~~~~~~LP~a~TCf~~L~LP~Yss~e~l~~kL~~AI~ 346 (352)
T cd00078 277 EERKKFLQFVT----GSSRLPVGGFADLNPK-FT--IRRVGSPDDRLPTAHTCFNLLKLPPYSSKEILREKLLYAIN 346 (352)
T ss_pred HHHHHhheeec----CCCCCCCcchhhcCCC-eE--EEECCCCCCCCCcchhhhccccCCCCCCHHHHHHHHHHHHH
Confidence 99999999999 5778999999877643 33 33223235689999999998765554433455555555543
No 5
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=99.91 E-value=8.6e-25 Score=185.38 Aligned_cols=129 Identities=22% Similarity=0.329 Sum_probs=101.3
Q ss_pred CcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCC-CCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcH
Q psy12140 8 GSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGD-INVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTH 86 (173)
Q Consensus 8 ~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~-idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~ 86 (173)
+++++|++||++||++|+|..+|++|+++||+.++||.++ ||+++|+++|+|.+++... ++.++|||+++++|++
T Consensus 162 ~~~~~~~~~~r~Gf~~vi~~~~l~~f~~~eL~~l~~G~~~~i~~~~l~~~~~~~~g~~~~----~~~i~~fw~vl~~~s~ 237 (317)
T PF00632_consen 162 ESVKKQLEAFRKGFYSVIPLELLSLFSPEELERLLCGSPEPIDVEDLKSNTRYEGGYTES----SPVIQWFWEVLEEFSQ 237 (317)
T ss_dssp TTTHHHHHHHHHHHHHHSSHHHHTTSSHHHHHHHHHCBSS---HHHHHHTEEEESSS-TT----SHHHHHHHHHHHHS-H
T ss_pred cccchhHHHHhcchhhcchhHHHHcCCHHHHHHHhcCccccCCHHHHHhcccchhccccc----cceeeEEeeeeccCCH
Confidence 5789999999999999999999999999999999999999 9999999999999655432 5789999999999999
Q ss_pred HHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCCC
Q psy12140 87 LERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGE 146 (173)
Q Consensus 87 ~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~~ 146 (173)
++|++||+|+| +++.+|+++++.+.+ .+.+...+.. .+-.+|.|||||+...-+
T Consensus 238 ~~~~~fL~F~T----G~~~lP~~G~~~l~~-~i~i~~~~~~-~~~~LP~a~TCf~~L~LP 291 (317)
T PF00632_consen 238 EERRKFLRFVT----GSSRLPPGGFSNLNP-KITIQFSDDS-PDDRLPTAHTCFNTLKLP 291 (317)
T ss_dssp HHHHHHHHHHH----SSSSB-TTGGGGGE--EEEEEEESC--STTS--EEEGGGTEEEEE
T ss_pred HHhheeEEEec----CCCCCCccccccccc-eeEEeecCCC-ccccCceecCcCCEEECC
Confidence 99999999999 578899999986643 2333322221 234799999999965433
No 6
>KOG0941|consensus
Probab=99.90 E-value=2.3e-24 Score=198.58 Aligned_cols=127 Identities=21% Similarity=0.259 Sum_probs=112.1
Q ss_pred CCcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcH
Q psy12140 7 DGSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTH 86 (173)
Q Consensus 7 ~~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~ 86 (173)
..+|++|++||++||+.|+..+.|++|.|+||+.||||..+.|...++.+|.|+|+|..+ |+.|+|||++++.|+.
T Consensus 699 n~sv~~q~~aF~~GF~~v~~~~~l~lf~peEl~~li~G~~~~Dw~~l~~~~~Y~ggy~~~----~~~I~~FWe~~~~~~~ 774 (850)
T KOG0941|consen 699 NKSVKKQFEAFRRGFYKVCDENLLRLFQPEELEKLICGSEDYDWKALEETTEYDGGYTSD----SPTIQWFWEIFHAFTL 774 (850)
T ss_pred hhhHHHHHHHHHHHHHHHhchhhhhhcCHHHHHHHHhCCCccCHHHHhhhceecCcccCC----ChHHHHHHHHHHhCCH
Confidence 578999999999999999999999999999999999999999999999999999877554 7899999999999999
Q ss_pred HHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCCC
Q psy12140 87 LERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGE 146 (173)
Q Consensus 87 ~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~~ 146 (173)
++|++||||.| ++++||..++..+ ++.|+-.+...-.+|.+|||||-...+
T Consensus 775 ~~kkkfL~F~T----GsdRipv~G~~~l-----~~~i~~~~~~~~~lP~shTCfN~L~Lp 825 (850)
T KOG0941|consen 775 EEKKKFLQFLT----GSDRIPVGGLAKL-----KLVIQKNGPDEDRLPVSHTCFNVLLLP 825 (850)
T ss_pred HHhhhheEeec----CCCccccCChhhc-----eEEEecCCCCcccCcchhhhhhhhhcc
Confidence 99999999999 6899999999765 445544333345799999999976544
No 7
>KOG0942|consensus
Probab=99.84 E-value=9e-22 Score=182.59 Aligned_cols=127 Identities=13% Similarity=0.179 Sum_probs=110.6
Q ss_pred cHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCC-CCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcHH
Q psy12140 9 SWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVG-DINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHL 87 (173)
Q Consensus 9 ~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~-~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~~ 87 (173)
++.+|+.||++||..|||++||++|++.|||.||+|.+ .||++|||+||.|.|+|... |++|..||+++++++.+
T Consensus 849 rir~~c~AFr~Gls~II~~eWl~MF~~~ELQiLIsG~~~pidldDLr~~teY~Ggy~~~----hp~Iv~FWeVl~~F~~e 924 (1001)
T KOG0942|consen 849 RIRRQCSAFRKGLSQIISPEWLRMFNEHELQILISGAEDPIDLDDLRKNTEYAGGYSPD----HPTIVMFWEVLEEFSDE 924 (1001)
T ss_pred HHHHHHHHHhcchhhcCCHHHHHhhChhheeeeecCCcCcccHHHHHhhccccCCCCCC----CCchhHHHHHHHhcchH
Confidence 57899999999999999999999999999999999976 69999999999998766543 78999999999999999
Q ss_pred HHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCCC
Q psy12140 88 ERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGE 146 (173)
Q Consensus 88 ~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~~ 146 (173)
+|++||+|+| .++..|..|++.++|. +.+...|. .+-.+|+|.||-|=..-+
T Consensus 925 dKr~fLKFVT----scsRpPllGFK~L~P~-FcI~n~gs--d~~RLPTASTCmNLLKLP 976 (1001)
T KOG0942|consen 925 DKRKFLKFVT----SCSRPPLLGFKALDPA-FCIRNAGS--DDDRLPTASTCMNLLKLP 976 (1001)
T ss_pred HHHHHHHHHh----cCCCcccccchhcCcc-ceeeeCCC--ccccCCcHHHHHHHhcCC
Confidence 9999999999 4666899999999986 66665654 334899999999844333
No 8
>KOG4427|consensus
Probab=99.81 E-value=7.1e-20 Score=167.61 Aligned_cols=131 Identities=20% Similarity=0.281 Sum_probs=106.6
Q ss_pred cHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcC-CCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHh-hcH
Q psy12140 9 SWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNG-VGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEK-MTH 86 (173)
Q Consensus 9 ~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G-~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~-~~~ 86 (173)
.+.+|..||.+||.++|.++||++|+|.||+.||+| ..+||++|+|+||.|-|++.++ |++|.|+|+++.. |++
T Consensus 919 qi~eqt~Af~rG~rsii~P~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh~s----hrvIkwlWdIl~~dFt~ 994 (1096)
T KOG4427|consen 919 QIVEQTNAFYRGFRSIISPEWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFHDS----HRVIKWLWDILAGDFTP 994 (1096)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccCCc----chhHHHHHHHHhccCCh
Confidence 478999999999999999999999999999999999 5799999999999999888765 7899999999996 999
Q ss_pred HHHHHHHHHHHHhhccccccCchhccCCChhhhHh-----------------hhcC-----CCCCchhhhhhcceecCCC
Q psy12140 87 LERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRL-----------------LLNG-----VGDINVTVLISYTSFIDES 144 (173)
Q Consensus 87 ~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~l-----------------li~G-----~~~id~~~lkahT~y~~~~ 144 (173)
++|..||+|+|. ++..|.-|++.+.|. |-+ ++.| .+.---.+|.+.||||-..
T Consensus 995 eERklfLKFVTS----CSrpPlLGFayLePp-FsIrCVeVSdDqd~gdtiGSVvRGFfaiRKg~~~~RLPTaSTCfNlLK 1069 (1096)
T KOG4427|consen 995 EERKLFLKFVTS----CSRPPLLGFAYLEPP-FSIRCVEVSDDQDTGDTIGSVVRGFFAIRKGQPVERLPTASTCFNLLK 1069 (1096)
T ss_pred HHHHHHHHHHhh----cCCCccccccccCCC-ceEEEEEecCcccchhhHhHHHHhhhhhhcCCccccCCchhhHHHhhh
Confidence 999999999995 556788888777664 111 1111 0111135889999999665
Q ss_pred CCCh
Q psy12140 145 GEPS 148 (173)
Q Consensus 145 ~~~~ 148 (173)
.+++
T Consensus 1070 LPnY 1073 (1096)
T KOG4427|consen 1070 LPNY 1073 (1096)
T ss_pred CCCc
Confidence 5544
No 9
>KOG0939|consensus
Probab=99.77 E-value=2.5e-19 Score=162.87 Aligned_cols=98 Identities=20% Similarity=0.396 Sum_probs=87.6
Q ss_pred ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCC
Q psy12140 66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESG 145 (173)
Q Consensus 66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~ 145 (173)
+.+|+++||+.+-++. |+..+|.+ ..||..||+++||...++.|+..||++||||.++||++|||+||.|.++..
T Consensus 545 t~~nK~~yv~lv~q~r--L~~~ir~q---l~afl~Gl~~iip~~li~if~E~ELELLisGlpeidvdd~k~nt~y~~~~~ 619 (720)
T KOG0939|consen 545 TEANKQEYVQLVTQYR--LTNSIRKQ---LDAFLAGLHEIIPKVLLSIFDEQELELLISGLPEIDVDDLKANTEYLGYTK 619 (720)
T ss_pred ccccHHHHHHHHHHHH--HHhhHHHH---HHHHHHHHHHhhHHHHHHHhhhHHHHHHHcCCCcccHHHHHhhhhhhcccc
Confidence 3468899999998766 88998885 678888999999999999999999999999999999999999999987543
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140 146 EPSERLIKFKRWLWSIVEKMTHLERMDL 173 (173)
Q Consensus 146 ~~~~~~~~~i~wFW~vv~~~~~~~r~~l 173 (173)
. +++|+|||++|++|++++|+||
T Consensus 620 ~-----~~~i~wFWrav~sf~~eerakl 642 (720)
T KOG0939|consen 620 A-----SSVIQWFWRAVRSFDQEERAKL 642 (720)
T ss_pred c-----chHHHHHHHHHhhhcHHHHHhh
Confidence 3 4689999999999999999986
No 10
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with. E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
Probab=99.75 E-value=3.3e-18 Score=147.38 Aligned_cols=99 Identities=27% Similarity=0.427 Sum_probs=85.1
Q ss_pred ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCC
Q psy12140 66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESG 145 (173)
Q Consensus 66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~ 145 (173)
+.+|+++||+..-++. +..+.+. |+.+|++||++++|...++.|+|+||+.++||.++||+++|++||.|+++|.
T Consensus 166 t~~N~~eYv~~~~~~~--l~~~~~~---~~~afr~Gf~~vip~~~l~~f~~~eL~~licG~~~i~~~~l~~~~~~~~g~~ 240 (336)
T smart00119 166 TEENKKEYVHLVIEYR--LNKGIEK---QLEAFREGFSEVIPENLLRLFTPEELELLICGSPEIDVDDLKSNTEYKGGYS 240 (336)
T ss_pred CHHHHHHHHHHHHHHH--HhhhHHH---HHHHHHHHHHHHcCHHHhhCCCHHHHHHHhCCCCCCCHHHHhhheEEcCCCC
Confidence 4678899998775444 4444444 5889999999999999999999999999999999999999999999997665
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140 146 EPSERLIKFKRWLWSIVEKMTHLERMDL 173 (173)
Q Consensus 146 ~~~~~~~~~i~wFW~vv~~~~~~~r~~l 173 (173)
.+ ++.|+|||++|++||+++|++|
T Consensus 241 ~~----~~~i~~Fw~vl~~~s~ee~~~f 264 (336)
T smart00119 241 EN----SQTIKWFWEVVESFTNEERRKL 264 (336)
T ss_pred CC----CHHHHHHHHHHHHCCHHHHHHh
Confidence 53 5789999999999999999975
No 11
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains.
Probab=99.74 E-value=4.2e-18 Score=147.18 Aligned_cols=99 Identities=23% Similarity=0.379 Sum_probs=85.4
Q ss_pred ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCC
Q psy12140 66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESG 145 (173)
Q Consensus 66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~ 145 (173)
+.+|+++||+..-++. +..+.+. |+.+|++||++++|...++.|+++||+.++||.+.||+++|++||.|++++.
T Consensus 184 T~~N~~eYv~~~~~~~--l~~~~~~---~~~afr~Gf~~vip~~~l~~f~~~eL~~lvcG~~~id~~~l~~~~~y~~~~~ 258 (352)
T cd00078 184 TNENKEEYVDLYVDYR--LNKGIEE---QVEAFRDGFSEVIPEELLSLFTPEELELLICGSEDIDLEDLKKNTEYKGGYS 258 (352)
T ss_pred CHHHHHHHHHHHHHHH--hcchHHH---HHHHHHHHHHHHcCHHhhhCCCHHHHHHHhCCCCCCCHHHHHhceEecCCCC
Confidence 4578899998775444 5545444 5889999999999999999999999999999999999999999999998765
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140 146 EPSERLIKFKRWLWSIVEKMTHLERMDL 173 (173)
Q Consensus 146 ~~~~~~~~~i~wFW~vv~~~~~~~r~~l 173 (173)
.+ +++|+|||++|++||+++|++|
T Consensus 259 ~~----~~~i~~Fw~vl~~~s~eer~~f 282 (352)
T cd00078 259 SD----SPTIQWFWEVLESFTNEERKKF 282 (352)
T ss_pred CC----CHHHHHHHHHHHhCCHHHHHHh
Confidence 32 5889999999999999999975
No 12
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.3e-18 Score=161.39 Aligned_cols=98 Identities=18% Similarity=0.372 Sum_probs=82.0
Q ss_pred ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCC-CchhhhhhcceecCCC
Q psy12140 66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGD-INVTVLISYTSFIDES 144 (173)
Q Consensus 66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~-id~~~lkahT~y~~~~ 144 (173)
+.+|+++||...-++. +...++. ||.||..||+++||+.++.+|++.||++||||.++ ||+++||.||.|.| |
T Consensus 697 T~~Nk~eYV~~vvdy~--L~k~ie~---Q~~AF~~GF~~ii~~~~i~iF~e~ELe~LI~G~~e~iDidd~K~~T~Y~G-Y 770 (872)
T COG5021 697 TNENKKEYVKKVVDYK--LNKRVEK---QFSAFKSGFSEIIPPDLLQIFDESELELLIGGIPEDIDIDDWKSNTAYHG-Y 770 (872)
T ss_pred cchHHHHHHHHHHHHH--hhhhHHH---HHHHHHhhHHHhcCHHHHhhcCHHHHHHHHCCCCccccHHHHhhcccccc-c
Confidence 3467777775552222 4455555 59999999999999999999999999999999998 99999999999976 4
Q ss_pred CCChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140 145 GEPSERLIKFKRWLWSIVEKMTHLERMDL 173 (173)
Q Consensus 145 ~~~~~~~~~~i~wFW~vv~~~~~~~r~~l 173 (173)
..+ +|+|.|||++|++|+.++|++|
T Consensus 771 ~~~----s~~I~wFWeii~~f~~eer~kl 795 (872)
T COG5021 771 TED----SPIIVWFWEIISEFDFEERAKL 795 (872)
T ss_pred ccC----CcHHHHHHHHHHHhCHHHHhhh
Confidence 443 5889999999999999999986
No 13
>KOG0942|consensus
Probab=99.68 E-value=2.2e-17 Score=153.65 Aligned_cols=100 Identities=14% Similarity=0.300 Sum_probs=87.8
Q ss_pred CChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCC-CCCchhhhhhcceecCC
Q psy12140 65 EPSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGV-GDINVTVLISYTSFIDE 143 (173)
Q Consensus 65 ~~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~-~~id~~~lkahT~y~~~ 143 (173)
.+.+|+++||+..-++- ++.++|+ |..||++|++.+||++|+++|++.|+++||+|. ..||++|+|+||.|-|+
T Consensus 829 VTneNvi~YihLVsnY~--LN~rir~---~c~AFr~Gls~II~~eWl~MF~~~ELQiLIsG~~~pidldDLr~~teY~Gg 903 (1001)
T KOG0942|consen 829 VTNENVIEYIHLVSNYK--LNQRIRR---QCSAFRKGLSQIISPEWLRMFNEHELQILISGAEDPIDLDDLRKNTEYAGG 903 (1001)
T ss_pred eechhhhhhhHHhhhhH--HHHHHHH---HHHHHhcchhhcCCHHHHHhhChhheeeeecCCcCcccHHHHHhhccccCC
Confidence 35688999998875544 8888888 578999999999999999999999999999996 56999999999999877
Q ss_pred CCCChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140 144 SGEPSERLIKFKRWLWSIVEKMTHLERMDL 173 (173)
Q Consensus 144 ~~~~~~~~~~~i~wFW~vv~~~~~~~r~~l 173 (173)
|.++ ||+|..||+|+++|+.|+|++|
T Consensus 904 y~~~----hp~Iv~FWeVl~~F~~edKr~f 929 (1001)
T KOG0942|consen 904 YSPD----HPTIVMFWEVLEEFSDEDKRKF 929 (1001)
T ss_pred CCCC----CCchhHHHHHHHhcchHHHHHH
Confidence 6654 7999999999999999999875
No 14
>KOG0940|consensus
Probab=99.68 E-value=6e-17 Score=140.46 Aligned_cols=131 Identities=20% Similarity=0.218 Sum_probs=109.9
Q ss_pred CcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcHH
Q psy12140 8 GSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHL 87 (173)
Q Consensus 8 ~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~~ 87 (173)
..+++|..||.+||.+++|..+++.|++.|+++++||.++||++||+++|.|.+.+.. +.+|.|||+.+..|+++
T Consensus 211 ~~~~~q~~~l~~~~~~~~p~~~~~~~~e~~~e~~~~~~~~~~~~d~~~~t~~~~~~~~-----~~~i~wf~~~v~~~~~~ 285 (358)
T KOG0940|consen 211 RGIQEQLKALLQGFNELLPQSLLRIFDEMELELALSGDPEIDVNDWKQNTEYRGYSET-----DRQIDWFWNNVDEMDNE 285 (358)
T ss_pred HHHHHHHHHHhccccccCCcccccccchhhHHHHhcCCcccchhHHhhhcccccccCC-----ccccHHHHHhhhhcChH
Confidence 4688999999999999999999999999999999999999999999999999954322 67899999999999999
Q ss_pred HHHHHHHHHHHhhccccccCchhccCCChhhh--HhhhcCCCCCchhhhhhcceecCCCCCCh
Q psy12140 88 ERMDLGCAIAIRAGIFDVVPASCLENLTPEDF--RLLLNGVGDINVTVLISYTSFIDESGEPS 148 (173)
Q Consensus 88 ~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el--~lli~G~~~id~~~lkahT~y~~~~~~~~ 148 (173)
+|+++++|+| ....+|..++..+....- .+.|.+ ..-....|++|||||+...+..
T Consensus 286 ~r~r~l~~~t----g~~~vp~~~~~~l~~s~~~~~~~ie~-~~~~~~~p~~htcfnrld~~~~ 343 (358)
T KOG0940|consen 286 ERIRLLQFVT----GTSRVPVEGFAILSGSNGPRKFCIEK-WGKSTQLPRSHTCFNRLDLPPY 343 (358)
T ss_pred HHHhhhhccC----CCccccccchhhccCCCccCceeecC-cccccccchhcccccccccccc
Confidence 9999999999 577789999987765421 223444 2233479999999998765543
No 15
>KOG4427|consensus
Probab=99.65 E-value=2.2e-16 Score=144.97 Aligned_cols=98 Identities=20% Similarity=0.332 Sum_probs=82.8
Q ss_pred hhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCC-CCCchhhhhhcceecCCCC
Q psy12140 67 SERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGV-GDINVTVLISYTSFIDESG 145 (173)
Q Consensus 67 ~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~-~~id~~~lkahT~y~~~~~ 145 (173)
.+|+-.||...-. .+|+.+++. |-.||.+||.++|.+.||++|.|+||+.||+|. .+||++|+|+||.|-||++
T Consensus 901 neNKi~YIH~MA~--~rmnrqi~e---qt~Af~rG~rsii~P~WlslFs~~elq~LiSG~nsdiDl~DLkrnt~Y~GGfh 975 (1096)
T KOG4427|consen 901 NENKIQYIHAMAH--FRMNRQIVE---QTNAFYRGFRSIISPEWLSLFSPPELQRLISGDNSDIDLDDLKRNTKYYGGFH 975 (1096)
T ss_pred ccchHHHHHHHHH--HHHHHHHHH---HHHHHHHHHHHhcCHHHHHccCcHHHHHHhcCCCCCCCHHHHHhcCEeecccC
Confidence 4677777755432 247777776 577888899999999999999999999999995 7899999999999999887
Q ss_pred CChhhHHHHHHHHHHHHhc-CCHHHhhcC
Q psy12140 146 EPSERLIKFKRWLWSIVEK-MTHLERMDL 173 (173)
Q Consensus 146 ~~~~~~~~~i~wFW~vv~~-~~~~~r~~l 173 (173)
.+ |++|+|||+|+++ |+++||+.|
T Consensus 976 ~s----hrvIkwlWdIl~~dFt~eERklf 1000 (1096)
T KOG4427|consen 976 DS----HRVIKWLWDILAGDFTPEERKLF 1000 (1096)
T ss_pred Cc----chhHHHHHHHHhccCChHHHHHH
Confidence 65 7999999999986 999999753
No 16
>KOG0941|consensus
Probab=99.63 E-value=4.9e-16 Score=143.94 Aligned_cols=99 Identities=19% Similarity=0.305 Sum_probs=88.1
Q ss_pred ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCC
Q psy12140 66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESG 145 (173)
Q Consensus 66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~ 145 (173)
+.+|.++||...-+++ ++..+++ ||.+|++||+.|+....++.|+|+|++.+|||+.+.|...++..|.|.|+|.
T Consensus 682 t~~Nr~efV~~Yvd~~--~n~sv~~---q~~aF~~GF~~v~~~~~l~lf~peEl~~li~G~~~~Dw~~l~~~~~Y~ggy~ 756 (850)
T KOG0941|consen 682 TNENRREFVNLYVDYI--LNKSVKK---QFEAFRRGFYKVCDENLLRLFQPEELEKLICGSEDYDWKALEETTEYDGGYT 756 (850)
T ss_pred ccccHHHHHHHHHHHH--HhhhHHH---HHHHHHHHHHHHhchhhhhhcCHHHHHHHHhCCCccCHHHHhhhceecCccc
Confidence 3467888887766665 7777777 6999999999999999999999999999999999999999999999998765
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140 146 EPSERLIKFKRWLWSIVEKMTHLERMDL 173 (173)
Q Consensus 146 ~~~~~~~~~i~wFW~vv~~~~~~~r~~l 173 (173)
.+ ||+|+|||+++++|+.++|++|
T Consensus 757 ~~----~~~I~~FWe~~~~~~~~~kkkf 780 (850)
T KOG0941|consen 757 SD----SPTIQWFWEIFHAFTLEEKKKF 780 (850)
T ss_pred CC----ChHHHHHHHHHHhCCHHHhhhh
Confidence 54 7899999999999999999986
No 17
>KOG0943|consensus
Probab=99.62 E-value=1.4e-16 Score=151.14 Aligned_cols=129 Identities=33% Similarity=0.522 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcHHHH
Q psy12140 10 WVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLER 89 (173)
Q Consensus 10 v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~~~r 89 (173)
-+..++|+|+|+.||||.+.|..+||++|.++|||..+++++.+..+|.|.++++...+...+|.+|||++|++|+.++|
T Consensus 2863 ~~i~feAiReGiLDViPenmL~~LT~EDfRLiicG~eeVniqmL~e~TgFlDES~anaEkL~qFKqWFWqiiEkfs~qEk 2942 (3015)
T KOG0943|consen 2863 AEIPFEAIREGILDVIPENMLEDLTAEDFRLIICGCEEVNIQMLIEFTGFLDESGANAEKLLQFKQWFWQIIEKFSMQEK 2942 (3015)
T ss_pred eeccHHHHHHhHHhhcchhhhcccCHhHheeeeecccceehhHhhhhccccccccccHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34568999999999999999999999999999999999999999999999999998888889999999999999999999
Q ss_pred HHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCCC
Q psy12140 90 MDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGE 146 (173)
Q Consensus 90 ~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~~ 146 (173)
+.|.+||| .+--+|...-. |.|. --++ -.+..|.-+|.++||-.+.|-+
T Consensus 2943 QdLVfFWT----gSPaLPAa~e~-~p~~-aSim--iRP~dD~fLPTANTCISRLYVP 2991 (3015)
T KOG0943|consen 2943 QDLVFFWT----GSPALPAAEEG-FPPM-ASIM--IRPPDDQFLPTANTCISRLYVP 2991 (3015)
T ss_pred ccEEEEec----CCCCCCccccC-CCCC-Ccee--ecCcccccCCcccchhhheeee
Confidence 99999999 45556654322 2211 1122 2466788999999999988754
No 18
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' []. Proteins containing this domain at the C terminus include ubiquitin-protein ligase, which regulates ubiquitination of CDC25. Ubiquitin-protein ligase accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester, and then directly transfers the ubiquitin to targeted substrates. A cysteine residue is required for ubiquitin-thiolester formation. Human thyroid receptor interacting protein 12, which also contains this domain, is a component of an ATP-dependent multisubunit protein that interacts with the ligand binding domain of the thyroid hormone receptor. It could be an E3 ubiquitin-protein ligase. Human ubiquitin-protein ligase E3A interacts with the E6 protein of the cancer-associated Human papillomavirus type 16 and Human papillomavirus type 18. The E6/E6-AP complex binds to and targets the P53 tumour-suppressor protein for ubiquitin-mediated proteolysis.; GO: 0016881 acid-amino acid ligase activity, 0006464 protein modification process, 0005622 intracellular; PDB: 3TUG_A 1ZVD_A 1C4Z_C 1D5F_B 1ND7_A 2XBB_A 2XBF_A 3PT3_A 3G1N_B 3H1D_A ....
Probab=99.62 E-value=5.1e-16 Score=131.67 Aligned_cols=99 Identities=25% Similarity=0.431 Sum_probs=79.3
Q ss_pred ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCC-CchhhhhhcceecCCC
Q psy12140 66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGD-INVTVLISYTSFIDES 144 (173)
Q Consensus 66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~-id~~~lkahT~y~~~~ 144 (173)
+.+|+.+||+..-++. +....+. ++.+|++||.+++|...++.|+++||+.++||.+. +|+++|++||.|.+++
T Consensus 144 t~~N~~eyv~~~~~~~--l~~~~~~---~~~~~r~Gf~~vi~~~~l~~f~~~eL~~l~~G~~~~i~~~~l~~~~~~~~g~ 218 (317)
T PF00632_consen 144 TNENKEEYVRLLAQYR--LNESVKK---QLEAFRKGFYSVIPLELLSLFSPEELERLLCGSPEPIDVEDLKSNTRYEGGY 218 (317)
T ss_dssp TTTTHHHHHHHHHHHH--HTTTTHH---HHHHHHHHHHHHSSHHHHTTSSHHHHHHHHHCBSS---HHHHHHTEEEESSS
T ss_pred chhhhhHHHHhhhhhh--cccccch---hHHHHhcchhhcchhHHHHcCCHHHHHHHhcCccccCCHHHHHhcccchhcc
Confidence 4568888887764333 4443333 47888999999999999999999999999999999 9999999999999665
Q ss_pred CCChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140 145 GEPSERLIKFKRWLWSIVEKMTHLERMDL 173 (173)
Q Consensus 145 ~~~~~~~~~~i~wFW~vv~~~~~~~r~~l 173 (173)
..+ +++|+|||++|++||+++|++|
T Consensus 219 ~~~----~~~i~~fw~vl~~~s~~~~~~f 243 (317)
T PF00632_consen 219 TES----SPVIQWFWEVLEEFSQEERRKF 243 (317)
T ss_dssp -TT----SHHHHHHHHHHHHS-HHHHHHH
T ss_pred ccc----cceeeEEeeeeccCCHHHhhee
Confidence 543 5889999999999999999875
No 19
>KOG0170|consensus
Probab=99.55 E-value=1.9e-14 Score=127.89 Aligned_cols=130 Identities=17% Similarity=0.106 Sum_probs=107.4
Q ss_pred CcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCC-CCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcH
Q psy12140 8 GSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVG-DINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTH 86 (173)
Q Consensus 8 ~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~-~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~ 86 (173)
.+|++|++||+.||..|.|-+-|.+|+|+||..|+||.. .++++.+..|.++.++|. .+ .+.|+.+-+++..|+.
T Consensus 462 kGVqkQleAFr~GF~~VF~~~~Lqif~p~EL~~llcg~~e~ws~~TL~~~i~~DHGYT--~~--Sp~i~~li~ils~f~~ 537 (621)
T KOG0170|consen 462 KGVQKQLEAFRSGFSSVFPYEHLQIFTPEELVTLLCGVEEDWSMATLMEHIKADHGYT--MD--SPIIHDLISILSAFDK 537 (621)
T ss_pred hhHHHHHHHHHhhhhhccchhheeecCHHHHHHHhccchhhccHHHHHHhcccccCcc--CC--CcHHHHHHHHhhhhch
Confidence 579999999999999999999999999999999999965 699999999999886553 33 5678888899999999
Q ss_pred HHHHHHHHHHHHhhccccccCchhccCCChhhhHhhh-cC--CCCCchhhhhhcceecCCCCC
Q psy12140 87 LERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLL-NG--VGDINVTVLISYTSFIDESGE 146 (173)
Q Consensus 87 ~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli-~G--~~~id~~~lkahT~y~~~~~~ 146 (173)
++++.||||+| ++..+|.++|+.++|. |-++. .+ ...-|-.+|.-.||-|-...+
T Consensus 538 ~qQR~FLQFvT----GSprLPiGGfasLNPk-lTIVrKh~e~~~t~Dd~LPSVMTCaNYLKLP 595 (621)
T KOG0170|consen 538 EQQRLFLQFVT----GSPRLPIGGFASLNPK-LTIVRKHAEDSETPDDYLPSVMTCANYLKLP 595 (621)
T ss_pred HHHHHHHHHhc----CCCCCCCCcccccCCC-eEEEeccCCCCCCcccccchHHHHHhhhcCC
Confidence 99999999999 5778999999999986 43332 23 223456788999998843333
No 20
>KOG0943|consensus
Probab=99.31 E-value=1.2e-12 Score=124.83 Aligned_cols=80 Identities=49% Similarity=0.946 Sum_probs=76.5
Q ss_pred HHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCCCChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140 94 CAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 173 (173)
Q Consensus 94 qf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~~~~~~~~~~i~wFW~vv~~~~~~~r~~l 173 (173)
-|.++++|+.+|||...|..+++++|+++|||+.++++..+..+|-|+...+.+.+...++.+|||+||++|+..+|+.|
T Consensus 2866 ~feAiReGiLDViPenmL~~LT~EDfRLiicG~eeVniqmL~e~TgFlDES~anaEkL~qFKqWFWqiiEkfs~qEkQdL 2945 (3015)
T KOG0943|consen 2866 PFEAIREGILDVIPENMLEDLTAEDFRLIICGCEEVNIQMLIEFTGFLDESGANAEKLLQFKQWFWQIIEKFSMQEKQDL 2945 (3015)
T ss_pred cHHHHHHhHHhhcchhhhcccCHhHheeeeecccceehhHhhhhccccccccccHHHHHHHHHHHHHHHHHHhhhhhccE
Confidence 48999999999999999999999999999999999999999999999999999888888999999999999999999875
No 21
>KOG0940|consensus
Probab=99.08 E-value=2.5e-10 Score=99.30 Aligned_cols=97 Identities=23% Similarity=0.327 Sum_probs=79.5
Q ss_pred ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCC
Q psy12140 66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESG 145 (173)
Q Consensus 66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~ 145 (173)
+.+|.+.||...-+ ++...+++ |+.|+.+||...+|....+.|++.+++.++||.+.+|+.+|++||.|.+++
T Consensus 194 ~~~n~~~yi~~l~~---r~~~~~~~---q~~~l~~~~~~~~p~~~~~~~~e~~~e~~~~~~~~~~~~d~~~~t~~~~~~- 266 (358)
T KOG0940|consen 194 TEENKKEYIMLLQN---RFERGIQE---QLKALLQGFNELLPQSLLRIFDEMELELALSGDPEIDVNDWKQNTEYRGYS- 266 (358)
T ss_pred ccccHHHHHHHHHH---HHHHHHHH---HHHHHhccccccCCcccccccchhhHHHHhcCCcccchhHHhhhccccccc-
Confidence 45677777755433 23333333 588889999999999999999999999999999999999999999998532
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140 146 EPSERLIKFKRWLWSIVEKMTHLERMDL 173 (173)
Q Consensus 146 ~~~~~~~~~i~wFW~vv~~~~~~~r~~l 173 (173)
.+ |++|.|||+.++.+++++|+++
T Consensus 267 ~~----~~~i~wf~~~v~~~~~~~r~r~ 290 (358)
T KOG0940|consen 267 ET----DRQIDWFWNNVDEMDNEERIRL 290 (358)
T ss_pred CC----ccccHHHHHhhhhcChHHHHhh
Confidence 22 6899999999999999999874
No 22
>KOG0170|consensus
Probab=98.76 E-value=1.1e-08 Score=91.69 Aligned_cols=97 Identities=20% Similarity=0.164 Sum_probs=79.8
Q ss_pred hhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCC-CCchhhhhhcceecCCCCC
Q psy12140 68 ERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVG-DINVTVLISYTSFIDESGE 146 (173)
Q Consensus 68 e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~-~id~~~lkahT~y~~~~~~ 146 (173)
.|+++||+..-.+. +...+.+ |+.||++||.+|.|..-|..|+|+||.-++||.. .-++..+..|..+.+||.-
T Consensus 446 ~NleEYi~~VId~t--v~kGVqk---QleAFr~GF~~VF~~~~Lqif~p~EL~~llcg~~e~ws~~TL~~~i~~DHGYT~ 520 (621)
T KOG0170|consen 446 SNLEEYIHGVIDAT--VGKGVQK---QLEAFRSGFSSVFPYEHLQIFTPEELVTLLCGVEEDWSMATLMEHIKADHGYTM 520 (621)
T ss_pred ccHHHHHHHHHHHH--HhhhHHH---HHHHHHhhhhhccchhheeecCHHHHHHHhccchhhccHHHHHHhcccccCccC
Confidence 57888887764333 4555555 4899999999999999999999999999999964 4677888889999877655
Q ss_pred ChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140 147 PSERLIKFKRWLWSIVEKMTHLERMDL 173 (173)
Q Consensus 147 ~~~~~~~~i~wFW~vv~~~~~~~r~~l 173 (173)
+ +|+|+.|-+|+..|+.+||+.|
T Consensus 521 ~----Sp~i~~li~ils~f~~~qQR~F 543 (621)
T KOG0170|consen 521 D----SPIIHDLISILSAFDKEQQRLF 543 (621)
T ss_pred C----CcHHHHHHHHhhhhchHHHHHH
Confidence 4 5889999999999999999853
No 23
>KOG0085|consensus
Probab=59.79 E-value=9.9 Score=32.22 Aligned_cols=47 Identities=21% Similarity=0.408 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHH
Q psy12140 35 PEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIV 81 (173)
Q Consensus 35 ~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v 81 (173)
-.||.+|+-|.++---....+..+...+.|++.+...-+.+..++.+
T Consensus 37 rrelkllllgtgesgkstfikqmriihg~gyseedrkgf~~lvyqni 83 (359)
T KOG0085|consen 37 RRELKLLLLGTGESGKSTFIKQMRIIHGAGYSEEDRKGFTKLVYQNI 83 (359)
T ss_pred hhhheeeeecCCCcchhhHHHHHHhhhcCCCChhhhccchHHHHHHH
Confidence 57999999999887777777777777778887776666777776655
No 24
>COG2334 Putative homoserine kinase type II (protein kinase fold) [General function prediction only]
Probab=30.86 E-value=55 Score=28.39 Aligned_cols=30 Identities=27% Similarity=0.296 Sum_probs=25.2
Q ss_pred CCCcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHH
Q psy12140 6 SDGSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLL 41 (173)
Q Consensus 6 ~~~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell 41 (173)
..+....++.||..|..+|.| |+++|+++|
T Consensus 245 d~~~~~~~~~a~l~GY~~v~p------l~~~El~~L 274 (331)
T COG2334 245 DEADPRAAIAAFLEGYEEVRP------LTAAELELL 274 (331)
T ss_pred CCCCcHHHHHHHHHHHHhcCC------CCHHHHHHH
Confidence 345667899999999999988 788888876
No 25
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=22.90 E-value=85 Score=28.75 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=28.0
Q ss_pred CCCCcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHc
Q psy12140 5 TSDGSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLN 43 (173)
Q Consensus 5 ~~~~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~ 43 (173)
|-.|+|...++|++.|-+|.++++ |+++.|..++.
T Consensus 83 Tg~g~i~~AV~A~k~GA~Dfl~KP----~~~~~L~~~v~ 117 (464)
T COG2204 83 TGHGDIDTAVEALRLGAFDFLEKP----FDLDRLLAIVE 117 (464)
T ss_pred eCCCCHHHHHHHHhcCcceeeeCC----CCHHHHHHHHH
Confidence 457899999999999999998765 66776666543
No 26
>PRK10702 endonuclease III; Provisional
Probab=21.94 E-value=61 Score=26.25 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=31.2
Q ss_pred CCCCCCCcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCC
Q psy12140 2 SSSTSDGSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVG 46 (173)
Q Consensus 2 ~~~~~~~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~ 46 (173)
|.-|++..|.+.+..+...|- ..+.|...+++||+.++.|.+
T Consensus 39 sq~t~~~~v~~~~~~L~~~~p---t~e~l~~a~~~~l~~~i~~~G 80 (211)
T PRK10702 39 SAQATDVSVNKATAKLYPVAN---TPAAMLELGVEGVKTYIKTIG 80 (211)
T ss_pred HhhcCHHHHHHHHHHHHHHcC---CHHHHHCCCHHHHHHHHHHcC
Confidence 556788889888888876543 356777778999988887653
No 27
>PF11660 DUF3262: Protein of unknown function (DUF3262); InterPro: IPR021676 This entry represents small, hydrophobic proteins that are found occasionally on plasmids such as the Pseudomonas putida TOL (toluene catabolic) plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=21.34 E-value=1e+02 Score=20.89 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCC---CCHHHhhhcceecCC
Q psy12140 11 VNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGD---INVTVLISYTSFIDE 62 (173)
Q Consensus 11 ~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~---idv~d~~~~t~y~~~ 62 (173)
..|.+||..| +.++|..|..++-|.-- .=...|--.+.|+|-
T Consensus 3 ~aQ~~AF~aa----------sG~~p~~l~~li~g~~~avllLW~aWa~~~~y~Gw 47 (76)
T PF11660_consen 3 AAQLAAFQAA----------SGFTPSQLSLLILGILFAVLLLWAAWALWSAYRGW 47 (76)
T ss_pred hHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999887 55899999999998642 334577778888754
No 28
>PF04604 L_biotic_typeA: Type-A lantibiotic; InterPro: IPR007682 Lantibiotics are antibiotic peptides distinguished by the presence of the rare thioether amino acids lanthionine and/or methyllanthionine. They are produced by Gram-positive bacteria as gene-encoded precursor peptides and undergo post-translational modification to generate the mature peptide. Based on their structural and functional features lantibiotics are currently divided into two major groups: the flexible amphiphilic type-A and the rather rigid and globular type-B. Type-A lantibiotics act primarily by pore formation in the bacterial membrane by a mechanism involving the interaction with specific docking molecules such as the membrane precursor lipid II [].; GO: 0019748 secondary metabolic process, 0005576 extracellular region
Probab=20.23 E-value=72 Score=20.27 Aligned_cols=18 Identities=22% Similarity=0.565 Sum_probs=15.5
Q ss_pred hhhcCCCHHHHHHHHcCC
Q psy12140 28 SCLENLTPEDFRLLLNGV 45 (173)
Q Consensus 28 ~~L~~f~~~Elell~~G~ 45 (173)
.+|.-++.+||+.++-|.
T Consensus 10 ~~lqevs~eELd~ilGg~ 27 (51)
T PF04604_consen 10 NSLQEVSDEELDQILGGA 27 (51)
T ss_pred HHHHhcCHHHHHHHhCCC
Confidence 467788999999999994
No 29
>PF13945 NST1: Salt tolerance down-regulator
Probab=20.21 E-value=59 Score=26.21 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhcCCHHHhhcC
Q psy12140 151 LIKFKRWLWSIVEKMTHLERMDL 173 (173)
Q Consensus 151 ~~~~i~wFW~vv~~~~~~~r~~l 173 (173)
....|+-|| ++|++++|+.|
T Consensus 103 Ere~LkeFW---~SL~eeERr~L 122 (190)
T PF13945_consen 103 EREKLKEFW---ESLSEEERRSL 122 (190)
T ss_pred HHHHHHHHH---HccCHHHHHHH
Confidence 356899999 48999999875
Done!