Query psy12140
Match_columns 173
No_of_seqs 194 out of 755
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 19:44:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oni_A E3 ubiquitin-protein li 100.0 6.5E-31 2.2E-35 229.1 8.7 147 7-162 242-390 (392)
2 1nd7_A WW domain-containing pr 100.0 9.9E-31 3.4E-35 226.7 9.7 146 8-163 224-371 (374)
3 1zvd_A SMAD ubiquitination reg 100.0 1.5E-30 5.3E-35 225.9 8.9 147 8-163 224-372 (380)
4 3h1d_A E3 ubiquitin-protein li 100.0 2.3E-30 7.8E-35 226.4 8.1 148 7-163 247-396 (405)
5 3olm_A E3 ubiquitin-protein li 100.0 1.6E-29 5.6E-34 222.5 10.0 147 7-163 273-421 (429)
6 1c4z_A E6AP, ubiquitin-protein 100.0 1.9E-30 6.5E-35 223.8 3.6 143 8-163 207-350 (358)
7 2oni_A E3 ubiquitin-protein li 99.8 3.4E-21 1.2E-25 167.8 6.3 99 66-173 225-323 (392)
8 1nd7_A WW domain-containing pr 99.8 6.8E-21 2.3E-25 164.9 6.8 98 66-173 206-303 (374)
9 1zvd_A SMAD ubiquitination reg 99.8 1.4E-20 4.7E-25 163.4 7.1 98 66-173 206-303 (380)
10 1c4z_A E6AP, ubiquitin-protein 99.8 8.8E-21 3E-25 163.4 5.8 99 66-173 189-288 (358)
11 3h1d_A E3 ubiquitin-protein li 99.8 1.2E-20 4.2E-25 164.9 6.7 98 66-173 230-327 (405)
12 3pt3_A E3 ubiquitin-protein li 99.8 7.3E-21 2.5E-25 140.6 4.2 108 46-163 2-111 (118)
13 3olm_A E3 ubiquitin-protein li 99.8 6.7E-20 2.3E-24 161.2 6.9 98 66-173 256-353 (429)
14 3pt3_A E3 ubiquitin-protein li 99.4 2.5E-13 8.4E-18 100.2 3.1 47 127-173 2-48 (118)
15 2khf_A PLNJ; anti-microbial, b 73.7 2.6 8.9E-05 21.7 2.2 17 8-24 1-17 (26)
16 1aep_A Apolipophorin III; lipo 32.6 38 0.0013 24.4 3.2 38 5-42 65-102 (161)
17 1l6x_B Minimized B-domain of p 24.2 56 0.0019 18.2 2.2 18 154-171 5-24 (34)
No 1
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=99.97 E-value=6.5e-31 Score=229.07 Aligned_cols=147 Identities=17% Similarity=0.211 Sum_probs=117.5
Q ss_pred CCcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcH
Q psy12140 7 DGSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTH 86 (173)
Q Consensus 7 ~~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~ 86 (173)
..+|++|++||++||++|||.++|++|+|+||++|+||.++||++||++||.|.++|..+ ++.|+|||+++++|++
T Consensus 242 ~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~licG~~~id~~dl~~~t~y~~gy~~~----~~~i~~FW~vv~~~s~ 317 (392)
T 2oni_A 242 VNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHSIYKNGYCPN----HPVIQWFWKAVLLMDA 317 (392)
T ss_dssp TTTSHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCCCCHHHHHHTCEEETTCCTT----CHHHHHHHHHHHHSCH
T ss_pred hhhHHHHHHHHHHHHHHhccHHhhhcCCHHHHHHhhcCCCCCCHHHHhcceEECCCCCCC----CchheeHHHHHHhCCH
Confidence 367899999999999999999999999999999999999999999999999999766543 6789999999999999
Q ss_pred HHHHHHHHHHHHhhccccccCchhccCCChhhh--HhhhcCCCCCchhhhhhcceecCCCCCChhhHHHHHHHHHHHH
Q psy12140 87 LERMDLGCAIAIRAGIFDVVPASCLENLTPEDF--RLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIV 162 (173)
Q Consensus 87 ~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el--~lli~G~~~id~~~lkahT~y~~~~~~~~~~~~~~i~wFW~vv 162 (173)
++|++||||+| +++.+|..+++.+.+..- .+.|...+. +-.+|+||||||...-+.+.....+.+-+.-++
T Consensus 318 eer~~fL~FvT----Gs~rlP~~Gf~~L~~~~gp~~f~I~~~~~-~~~LP~a~TCfn~L~LP~Yss~e~L~~kL~~AI 390 (392)
T 2oni_A 318 EKRIRLLQFVT----GTSRVPMNGFAELYGSNGPQLFTIEQWGS-PEKLPRAHTCFNRLDLPPYETFEDLREKLLMAV 390 (392)
T ss_dssp HHHHHHHHHHH----SCSCCCTTCGGGCEETTEECCCEEEECSC-TTSCCEEEGGGTEEEECCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh----CCCCCCCcchhhhcccCCCCceEEEeCCC-CCcCcEEEcccCEeECCCCCCHHHHHHHHHHHH
Confidence 99999999999 578899999987753210 122332222 237999999999765554433345555555444
No 2
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=99.97 E-value=9.9e-31 Score=226.68 Aligned_cols=146 Identities=18% Similarity=0.237 Sum_probs=118.4
Q ss_pred CcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcHH
Q psy12140 8 GSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHL 87 (173)
Q Consensus 8 ~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~~ 87 (173)
.+|++|++||++||++|||.++|++|+|+||++||||.++||++||++||.|.| +..+ ++.|+|||++|++|+++
T Consensus 224 ~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~id~~dl~~~t~y~g-y~~~----~~~i~~FW~vv~~~~~e 298 (374)
T 1nd7_A 224 RGVQEQTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRH-YTRN----SKQIIWFWQFVKETDNE 298 (374)
T ss_dssp TTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCCCCCCHHHHHHTEEEES-CCTT----SHHHHHHHHHHHHSCHH
T ss_pred ccHHHHHHHHHHhhhhhCCHHHHhcCCHHHHHHHhcCCCCCCHHHHhhheEEcC-CCCC----CcceeeHHHHHHhcCHH
Confidence 478999999999999999999999999999999999999999999999999997 4332 67899999999999999
Q ss_pred HHHHHHHHHHHhhccccccCchhccCCChhh--hHhhhcCCCCCchhhhhhcceecCCCCCChhhHHHHHHHHHHHHh
Q psy12140 88 ERMDLGCAIAIRAGIFDVVPASCLENLTPED--FRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVE 163 (173)
Q Consensus 88 ~r~~llqf~t~~~Gf~~viP~~~l~~f~~~e--l~lli~G~~~id~~~lkahT~y~~~~~~~~~~~~~~i~wFW~vv~ 163 (173)
+|++||||+| +++.+|.++++.+.+.. ..+.|...+. |-.+|+||||||...-+.+.....+.+-+.-+++
T Consensus 299 er~~fL~FvT----Gs~rlP~~Gf~~L~~~~gp~~f~I~~~~~-~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~ 371 (374)
T 1nd7_A 299 VRMRLLQFVT----GTCRLPLGGFAELMGSNGPQKFCIEKVGK-DTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIE 371 (374)
T ss_dssp HHHHHHHHHH----SCSCCCTTCGGGCEETTEECCEEEECCSC-TTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----CCCCCCCcchhhccccCCCCceEEEeCCC-CCcCCEEEcccCEEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999 57889999998875321 1233333322 4479999999997765554433455555655554
No 3
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.5e-30 Score=225.90 Aligned_cols=147 Identities=18% Similarity=0.258 Sum_probs=119.2
Q ss_pred CcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcHH
Q psy12140 8 GSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHL 87 (173)
Q Consensus 8 ~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~~ 87 (173)
.+|++|++||++||++|||.++|++|+|+||++|+||.++||++||++||.|.| +.. + ++.|+|||+++++|+++
T Consensus 224 ~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~id~~dl~~~t~y~g-y~~--~--~~~i~~FW~vv~~~s~e 298 (380)
T 1zvd_A 224 RGIEAQFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVNTRLKH-CTP--D--SNIVKWFWKAVEFFDEE 298 (380)
T ss_dssp TTTHHHHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCBSSCCHHHHHHTEEEES-SCT--T--SHHHHHHHHHHHHSCHH
T ss_pred HhHHHHHHHHHHhHHHHhHHHHHhCCCHHHHHHhhCCCCCCChhhhhhccEecC-CCC--C--cchhhhHHHHHHhCCHH
Confidence 579999999999999999999999999999999999999999999999999985 322 2 67899999999999999
Q ss_pred HHHHHHHHHHHhhccccccCchhccCCChhhh--HhhhcCCCCCchhhhhhcceecCCCCCChhhHHHHHHHHHHHHh
Q psy12140 88 ERMDLGCAIAIRAGIFDVVPASCLENLTPEDF--RLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVE 163 (173)
Q Consensus 88 ~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el--~lli~G~~~id~~~lkahT~y~~~~~~~~~~~~~~i~wFW~vv~ 163 (173)
+|++||||+| +++.+|..+++.+.+..- .+.|.-.+.-+-.+|+||||||...-+.+.....+.+-+.-+++
T Consensus 299 er~~fL~FvT----Gs~rlP~~Gf~~L~~~~gp~~f~I~~~~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~ 372 (380)
T 1zvd_A 299 RRARLLQFVT----GSSRVPLQGFKALQGAAGPRLFTIHQIDACTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIE 372 (380)
T ss_dssp HHHHHHHHHH----SCSSBCTTCGGGCEETTEECCEEEEECCCCTTSCCEEEGGGTEEEECCCSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHh----CCCCCCCcchhhccccCCCCceEEEecCCCCCCCCEEecCcCEEECCCCCCHHHHHHHHHHHHH
Confidence 9999999999 578899999988864221 12233222334579999999997765544433566666666665
No 4
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=99.96 E-value=2.3e-30 Score=226.42 Aligned_cols=148 Identities=16% Similarity=0.238 Sum_probs=120.1
Q ss_pred CCcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcH
Q psy12140 7 DGSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTH 86 (173)
Q Consensus 7 ~~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~ 86 (173)
..+|++|++||++||++|||.++|++|+|+||++|+||.++||++||++||.|.| |.. .++.|+|||+++++|+.
T Consensus 247 ~~~v~~q~~aF~~Gf~~Vip~~~L~lF~~~ELe~Li~G~~~id~~dl~~~t~y~g-y~~----~~~~i~~FW~v~~~~s~ 321 (405)
T 3h1d_A 247 TGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHK-YQS----NSIQIQWFWRALRSFDQ 321 (405)
T ss_dssp TGGGHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCCCCHHHHHHTEEEES-SCT----TCHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHhCCCHHHHHHHhCCCCCCCHHHHHhhCcccC-CCC----CCchHhhHHHHHHhCCH
Confidence 3589999999999999999999999999999999999999999999999999985 322 26789999999999999
Q ss_pred HHHHHHHHHHHHhhccccccCchhccCCChhhh--HhhhcCCCCCchhhhhhcceecCCCCCChhhHHHHHHHHHHHHh
Q psy12140 87 LERMDLGCAIAIRAGIFDVVPASCLENLTPEDF--RLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVE 163 (173)
Q Consensus 87 ~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el--~lli~G~~~id~~~lkahT~y~~~~~~~~~~~~~~i~wFW~vv~ 163 (173)
++|++||+|+| +++.+|..+++.+.|... .+.|...+.-+-.+|+||||||...-+.+.....+.+-++.+++
T Consensus 322 eer~~fL~FvT----Gs~rlP~~Gf~~L~~~~~~~~f~i~~~~~~~~~LP~a~TCfn~L~LP~Yss~e~l~ekL~~AI~ 396 (405)
T 3h1d_A 322 ADRAKFLQFVT----GTSKVPLQGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQ 396 (405)
T ss_dssp HHHHHHHHHHH----SSSCCCTTCGGGCBCSSSBCCEEEEEECSCTTSCCEEEGGGTEEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc----CCCCCCCCccccccccCCCceEEEeeCCCCCCCCccceeccCEeECCCCCCHHHHHHHHHHHHH
Confidence 99999999999 578899999987765211 12232222234579999999997655444434567777777775
No 5
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.6e-29 Score=222.47 Aligned_cols=147 Identities=18% Similarity=0.218 Sum_probs=120.7
Q ss_pred CCcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcH
Q psy12140 7 DGSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTH 86 (173)
Q Consensus 7 ~~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~ 86 (173)
..+|++|++||++||++|||.++|++|+|+||++|+||.++||++||++||.|.| +.. .++.|+|||+++++|+.
T Consensus 273 ~~~v~~q~~aF~~Gf~~vip~~~L~~F~~~ELe~Li~G~~~id~~dl~~~t~y~G-y~~----~~~~I~~FW~vv~~~s~ 347 (429)
T 3olm_A 273 VDRVQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKHTDYRG-YQE----SDEVIQWFWKCVSEWDN 347 (429)
T ss_dssp TTTTHHHHHHHHHHHHTTSCHHHHTTSCHHHHHHHHTCBCCCCHHHHHHTEEEES-CCT----TSHHHHHHHHHHHHSCH
T ss_pred HHhHHHHHHHHHHHhhhcCCHHHHhcCCHHHHHHHhcCCCCCCHHHHHHhccccC-CCC----CchHHHHHHHHHHhCCH
Confidence 3579999999999999999999999999999999999999999999999999985 332 26889999999999999
Q ss_pred HHHHHHHHHHHHhhccccccCchhccCCChhhh--HhhhcCCCCCchhhhhhcceecCCCCCChhhHHHHHHHHHHHHh
Q psy12140 87 LERMDLGCAIAIRAGIFDVVPASCLENLTPEDF--RLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVE 163 (173)
Q Consensus 87 ~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el--~lli~G~~~id~~~lkahT~y~~~~~~~~~~~~~~i~wFW~vv~ 163 (173)
++|++||+|+| +++.+|..+++.+.+... .+.|...++ +-.+|+||||||...-+.+...+.+.+-+..+++
T Consensus 348 eer~~fL~FvT----Gs~rlP~~Gf~~L~~~~g~~~f~I~~~~~-~~~LP~A~TCfN~L~LP~Yss~e~L~ekL~~AI~ 421 (429)
T 3olm_A 348 EQRARLLQFTT----GTSRIPVNGFKDLQGSDGPRRFTIEKAGE-VQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVE 421 (429)
T ss_dssp HHHHHHHHHHH----SCSCBCTTCGGGCEETTEECCEEEECCSC-TTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhc----CCCCCCCcccccccCcCCCceEEEeeCCC-CCCCCccccccCEeECCCCCCHHHHHHHHHHHHH
Confidence 99999999999 578899999988865321 233433333 4479999999997766554444566777776665
No 6
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=99.96 E-value=1.9e-30 Score=223.78 Aligned_cols=143 Identities=21% Similarity=0.179 Sum_probs=115.8
Q ss_pred CcHHHHHHHHHHhhhccCChhhhc-CCCHHHHHHHHcCCCCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcH
Q psy12140 8 GSWVNTHWAIRAGIFDVVPASCLE-NLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTH 86 (173)
Q Consensus 8 ~~v~~q~~af~~Gf~~vip~~~L~-~f~~~Elell~~G~~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~ 86 (173)
.+|++|++||++||++|||.++|. +|+|+||++|+||.++||++||++||+|.+++..+ ++.|+|||+++++|++
T Consensus 207 ~~i~~q~~af~~Gf~~vip~~~L~~lF~~~ELe~li~G~~~id~~~l~~~t~y~~gy~~~----~~~i~~FW~vv~~~~~ 282 (358)
T 1c4z_A 207 KSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRD----SVLIREFWEIVHSFTD 282 (358)
T ss_dssp STTHHHHHHHHHHHHHHHSSSCSCSCSSTHHHHHHHHCBCCCCCTTTSTTCEEESSCCSS----CHHHHHHHHHHHTSCH
T ss_pred ccHHHHHHHHHHHHHHhcCcchhhcCCCHHHHHHHhhcccCCCHHHHHHHceeCCCCCCC----cchhhhHHHHHHhCCH
Confidence 578999999999999999999886 89999999999999999999999999999766543 6789999999999999
Q ss_pred HHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCCCChhhHHHHHHHHHHHHh
Q psy12140 87 LERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVE 163 (173)
Q Consensus 87 ~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~~~~~~~~~~i~wFW~vv~ 163 (173)
++|++||||+| +++.+|..+++.+. +.|.-.+.-+-.+|+||||||...-+.+.....+.+-+..+++
T Consensus 283 eer~~fL~FvT----Gs~rlP~~Gf~~l~-----~~I~~~~~~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~ 350 (358)
T 1c4z_A 283 EQKRLFLQFTT----GTDRAPVGGLGKLK-----MIIAKNGPDTERLPTSHTCFNVLLLPEYSSKEKLKERLLKAIT 350 (358)
T ss_dssp HHHHHHHHHHS----SSSSBCTTCGGGGC-----CEEEEEEESCSCCCEEEGGGTEEEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc----CCCCCCCCCcccce-----eeeecCCCCCCCCeEEEccCCEeECCCCCCHHHHHHHHHHHHH
Confidence 99999999999 57889999987652 3333222123479999999997654433333456666666654
No 7
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=99.83 E-value=3.4e-21 Score=167.80 Aligned_cols=99 Identities=16% Similarity=0.293 Sum_probs=85.6
Q ss_pred ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCC
Q psy12140 66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESG 145 (173)
Q Consensus 66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~ 145 (173)
+.+|+++||+..-++. +..+++. |+.+|++||++|||..+|+.|+++||+.+|||.++||+++|++||.|.++|.
T Consensus 225 T~~N~~eYv~l~~~~~--l~~~i~~---q~~af~~Gf~~vip~~~L~~F~~~ELe~licG~~~id~~dl~~~t~y~~gy~ 299 (392)
T 2oni_A 225 TNENKREYIDLVIQWR--FVNRVQK---QMNAFLEGFTELLPIDLIKIFDENELELLMCGLGDVDVNDWRQHSIYKNGYC 299 (392)
T ss_dssp CTTTHHHHHHHHHHHH--HTTTSHH---HHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCCCCHHHHHHTCEEETTCC
T ss_pred chhhHHHHHHHHHHHH--HhhhHHH---HHHHHHHHHHHhccHHhhhcCCHHHHHHhhcCCCCCCHHHHhcceEECCCCC
Confidence 4578888987764444 5555554 5899999999999999999999999999999999999999999999998766
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140 146 EPSERLIKFKRWLWSIVEKMTHLERMDL 173 (173)
Q Consensus 146 ~~~~~~~~~i~wFW~vv~~~~~~~r~~l 173 (173)
.+ |++|+|||+||++||+++|++|
T Consensus 300 ~~----~~~i~~FW~vv~~~s~eer~~f 323 (392)
T 2oni_A 300 PN----HPVIQWFWKAVLLMDAEKRIRL 323 (392)
T ss_dssp TT----CHHHHHHHHHHHHSCHHHHHHH
T ss_pred CC----CchheeHHHHHHhCCHHHHHHH
Confidence 54 5889999999999999999875
No 8
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=99.82 E-value=6.8e-21 Score=164.95 Aligned_cols=98 Identities=17% Similarity=0.276 Sum_probs=83.4
Q ss_pred ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCC
Q psy12140 66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESG 145 (173)
Q Consensus 66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~ 145 (173)
+.+|+++||+..-++. |...++. |+.+|++||+++||..+|+.|+|+||+++|||.++||+++|++||.|+| |.
T Consensus 206 T~~N~~eYv~l~~~~~--l~~~i~~---q~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~id~~dl~~~t~y~g-y~ 279 (374)
T 1nd7_A 206 TEENKDEYIGLMTEWR--FSRGVQE---QTKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRH-YT 279 (374)
T ss_dssp CTTTHHHHHHHHHHHH--HHTTTHH---HHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCCCCCCHHHHHHTEEEES-CC
T ss_pred ccccHHHHHHHHHHHH--HhccHHH---HHHHHHHhhhhhCCHHHHhcCCHHHHHHHhcCCCCCCHHHHhhheEEcC-CC
Confidence 4578888887764433 4444444 4899999999999999999999999999999999999999999999987 54
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140 146 EPSERLIKFKRWLWSIVEKMTHLERMDL 173 (173)
Q Consensus 146 ~~~~~~~~~i~wFW~vv~~~~~~~r~~l 173 (173)
.+ |++|+|||+||++||+++|++|
T Consensus 280 ~~----~~~i~~FW~vv~~~~~eer~~f 303 (374)
T 1nd7_A 280 RN----SKQIIWFWQFVKETDNEVRMRL 303 (374)
T ss_dssp TT----SHHHHHHHHHHHHSCHHHHHHH
T ss_pred CC----CcceeeHHHHHHhcCHHHHHHH
Confidence 43 6899999999999999999875
No 9
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=99.81 E-value=1.4e-20 Score=163.36 Aligned_cols=98 Identities=19% Similarity=0.343 Sum_probs=84.0
Q ss_pred ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCC
Q psy12140 66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESG 145 (173)
Q Consensus 66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~ 145 (173)
+.+|+++||+..-++. +...++. |+.+|++||++|||..+|+.|+++||+++|||.++||+++|++||.|.| |.
T Consensus 206 T~~N~~eYv~l~~~~~--l~~~i~~---q~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~id~~dl~~~t~y~g-y~ 279 (380)
T 1zvd_A 206 NEENKKEYVRLYVNWR--FLRGIEA---QFLALQKGFNEVIPQHLLKTFDEKELELIICGLGKIDVNDWKVNTRLKH-CT 279 (380)
T ss_dssp TTTTHHHHHHHHHHHH--HTTTTHH---HHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCBSSCCHHHHHHTEEEES-SC
T ss_pred ccccHHHHHHHHHHHH--HHHhHHH---HHHHHHHhHHHHhHHHHHhCCCHHHHHHhhCCCCCCChhhhhhccEecC-CC
Confidence 4578889987764444 5555555 5899999999999999999999999999999999999999999999985 43
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140 146 EPSERLIKFKRWLWSIVEKMTHLERMDL 173 (173)
Q Consensus 146 ~~~~~~~~~i~wFW~vv~~~~~~~r~~l 173 (173)
.+ |++|+|||+||++||+++|++|
T Consensus 280 ~~----~~~i~~FW~vv~~~s~eer~~f 303 (380)
T 1zvd_A 280 PD----SNIVKWFWKAVEFFDEERRARL 303 (380)
T ss_dssp TT----SHHHHHHHHHHHHSCHHHHHHH
T ss_pred CC----cchhhhHHHHHHhCCHHHHHHH
Confidence 32 6899999999999999999875
No 10
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=99.81 E-value=8.8e-21 Score=163.44 Aligned_cols=99 Identities=20% Similarity=0.256 Sum_probs=84.8
Q ss_pred ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhcc-CCChhhhHhhhcCCCCCchhhhhhcceecCCC
Q psy12140 66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLE-NLTPEDFRLLLNGVGDINVTVLISYTSFIDES 144 (173)
Q Consensus 66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~-~f~~~el~lli~G~~~id~~~lkahT~y~~~~ 144 (173)
+.+|+++||+..-++. |...++. |+.+|++||++++|...|. .|+|+||+++|||.++||+++|++||.|.++|
T Consensus 189 T~~N~~eYv~l~~~~~--l~~~i~~---q~~af~~Gf~~vip~~~L~~lF~~~ELe~li~G~~~id~~~l~~~t~y~~gy 263 (358)
T 1c4z_A 189 TNENRKEFVNLYSDYI--LNKSVEK---QFKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGY 263 (358)
T ss_dssp CTTTHHHHHHHHHHHH--HTSTTHH---HHHHHHHHHHHHHSSSCSCSCSSTHHHHHHHHCBCCCCCTTTSTTCEEESSC
T ss_pred ccccHHHHHHHHHHHH--hcccHHH---HHHHHHHHHHHhcCcchhhcCCCHHHHHHHhhcccCCCHHHHHHHceeCCCC
Confidence 4578888887765444 5555555 5899999999999999886 89999999999999999999999999999776
Q ss_pred CCChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140 145 GEPSERLIKFKRWLWSIVEKMTHLERMDL 173 (173)
Q Consensus 145 ~~~~~~~~~~i~wFW~vv~~~~~~~r~~l 173 (173)
..+ |++|+|||++|++||+++|++|
T Consensus 264 ~~~----~~~i~~FW~vv~~~~~eer~~f 288 (358)
T 1c4z_A 264 TRD----SVLIREFWEIVHSFTDEQKRLF 288 (358)
T ss_dssp CSS----CHHHHHHHHHHHTSCHHHHHHH
T ss_pred CCC----cchhhhHHHHHHhCCHHHHHHH
Confidence 554 5889999999999999999875
No 11
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=99.81 E-value=1.2e-20 Score=164.88 Aligned_cols=98 Identities=18% Similarity=0.379 Sum_probs=84.8
Q ss_pred ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCC
Q psy12140 66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESG 145 (173)
Q Consensus 66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~ 145 (173)
+.+|+++||+..-++. |..+++. |+.+|++||++|||..+|+.|+|+||+.+|||.++||+++|++||.|.| |.
T Consensus 230 T~~Nk~eYV~l~~~~~--l~~~v~~---q~~aF~~Gf~~Vip~~~L~lF~~~ELe~Li~G~~~id~~dl~~~t~y~g-y~ 303 (405)
T 3h1d_A 230 TEENKKEYVHLVCQMR--MTGAIRK---QLAAFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYHK-YQ 303 (405)
T ss_dssp CTTTHHHHHHHHHHHH--HTGGGHH---HHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCCCCHHHHHHTEEEES-SC
T ss_pred chHhHHHHHHHHHHHH--HHHHHHH---HHHHHHHHHHHHhhHHHHhCCCHHHHHHHhCCCCCCCHHHHHhhCcccC-CC
Confidence 4578889988775544 6666555 5899999999999999999999999999999999999999999999985 43
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140 146 EPSERLIKFKRWLWSIVEKMTHLERMDL 173 (173)
Q Consensus 146 ~~~~~~~~~i~wFW~vv~~~~~~~r~~l 173 (173)
.+ |++|+|||++|++||+++|++|
T Consensus 304 ~~----~~~i~~FW~v~~~~s~eer~~f 327 (405)
T 3h1d_A 304 SN----SIQIQWFWRALRSFDQADRAKF 327 (405)
T ss_dssp TT----CHHHHHHHHHHHHSCHHHHHHH
T ss_pred CC----CchHhhHHHHHHhCCHHHHHHH
Confidence 32 6899999999999999999875
No 12
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=99.81 E-value=7.3e-21 Score=140.63 Aligned_cols=108 Identities=31% Similarity=0.391 Sum_probs=68.0
Q ss_pred CCCCHHHhhhcceecCCCCCChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCc--hhccCCChhhhHhhh
Q psy12140 46 GDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPA--SCLENLTPEDFRLLL 123 (173)
Q Consensus 46 ~~idv~d~~~~t~y~~~~~~~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~--~~l~~f~~~el~lli 123 (173)
|-|||+|||+||+|.|++..+++..|++|+|||+++++|+.++|++||+|+| .++.+|. .+++.+. .+.|
T Consensus 2 ~~~Dv~dLr~~T~Y~~~~~~~~~~~~~~i~wFW~vv~~~~~eer~~fL~FvT----Gs~rlP~~~~Gf~~l~----~~~i 73 (118)
T 3pt3_A 2 PLGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWT----SSPSLPASEEGFQPMP----SITI 73 (118)
T ss_dssp ----------CCEEEECSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH----SCC------------C----EEEE
T ss_pred CccCHHHHHhhcEEcCCcCCCccccchHHHHHHHHHHHCCHHHHHHHHhHhc----CCCCCCCcccCcccCC----cEEE
Confidence 5699999999999999887766667799999999999999999999999999 5788999 6887652 2334
Q ss_pred cCCCCCchhhhhhcceecCCCCCChhhHHHHHHHHHHHHh
Q psy12140 124 NGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVE 163 (173)
Q Consensus 124 ~G~~~id~~~lkahT~y~~~~~~~~~~~~~~i~wFW~vv~ 163 (173)
.+ .-+-.+|+||||||...-+.+...+.+.+-++.+++
T Consensus 74 ~~--~~~~~LP~A~TCfn~L~LP~Y~s~e~L~~kL~~AI~ 111 (118)
T 3pt3_A 74 RP--PDDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIK 111 (118)
T ss_dssp ES--CCTTSCCEEETTTTEEEEECCSSHHHHHHHHHHHHC
T ss_pred EC--CCCCCCccceehhceeECCCCCCHHHHHHHHHHHHH
Confidence 43 234579999999997654443333567777777765
No 13
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=99.79 E-value=6.7e-20 Score=161.25 Aligned_cols=98 Identities=14% Similarity=0.279 Sum_probs=84.3
Q ss_pred ChhhHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccccCchhccCCChhhhHhhhcCCCCCchhhhhhcceecCCCC
Q psy12140 66 PSERLIKFKRWLWSIVEKMTHLERMDLGCAIAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESG 145 (173)
Q Consensus 66 ~~e~~~~~V~wfW~~v~~~~~~~r~~llqf~t~~~Gf~~viP~~~l~~f~~~el~lli~G~~~id~~~lkahT~y~~~~~ 145 (173)
+.+|+++||+..-++. |...++. |+.+|++||++|||..+|+.|+++||+.+|||.++||+++|++||.|.| |.
T Consensus 256 T~~Nk~eYV~l~~~~~--l~~~v~~---q~~aF~~Gf~~vip~~~L~~F~~~ELe~Li~G~~~id~~dl~~~t~y~G-y~ 329 (429)
T 3olm_A 256 TDGNKKEYVELYTQWR--IVDRVQE---QFKAFMDGFNELIPEDLVTVFDERELELLIGGIAEIDIEDWKKHTDYRG-YQ 329 (429)
T ss_dssp CTTTHHHHHHHHHHHH--HTTTTHH---HHHHHHHHHHTTSCHHHHTTSCHHHHHHHHTCBCCCCHHHHHHTEEEES-CC
T ss_pred CchhHHHHHHHHHHHH--HHHhHHH---HHHHHHHHhhhcCCHHHHhcCCHHHHHHHhcCCCCCCHHHHHHhccccC-CC
Confidence 4578888988775544 5555555 5899999999999999999999999999999999999999999999985 44
Q ss_pred CChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140 146 EPSERLIKFKRWLWSIVEKMTHLERMDL 173 (173)
Q Consensus 146 ~~~~~~~~~i~wFW~vv~~~~~~~r~~l 173 (173)
.+ |++|+|||+||++||+++|++|
T Consensus 330 ~~----~~~I~~FW~vv~~~s~eer~~f 353 (429)
T 3olm_A 330 ES----DEVIQWFWKCVSEWDNEQRARL 353 (429)
T ss_dssp TT----SHHHHHHHHHHHHSCHHHHHHH
T ss_pred CC----chHHHHHHHHHHhCCHHHHHHH
Confidence 32 6899999999999999999875
No 14
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=99.36 E-value=2.5e-13 Score=100.18 Aligned_cols=47 Identities=62% Similarity=0.967 Sum_probs=33.7
Q ss_pred CCCchhhhhhcceecCCCCCChhhHHHHHHHHHHHHhcCCHHHhhcC
Q psy12140 127 GDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDL 173 (173)
Q Consensus 127 ~~id~~~lkahT~y~~~~~~~~~~~~~~i~wFW~vv~~~~~~~r~~l 173 (173)
|-||+++||+||.|.+++..+++..|++|+|||++|++||+++|++|
T Consensus 2 ~~~Dv~dLr~~T~Y~~~~~~~~~~~~~~i~wFW~vv~~~~~eer~~f 48 (118)
T 3pt3_A 2 PLGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDL 48 (118)
T ss_dssp ----------CCEEEECSCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CccCHHHHHhhcEEcCCcCCCccccchHHHHHHHHHHHCCHHHHHHH
Confidence 56999999999999998888776778999999999999999999875
No 15
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=73.65 E-value=2.6 Score=21.71 Aligned_cols=17 Identities=35% Similarity=0.784 Sum_probs=14.6
Q ss_pred CcHHHHHHHHHHhhhcc
Q psy12140 8 GSWVNTHWAIRAGIFDV 24 (173)
Q Consensus 8 ~~v~~q~~af~~Gf~~v 24 (173)
|.|+.-..++++||||=
T Consensus 1 gawknfwsslrkgfydg 17 (26)
T 2khf_A 1 GAWKNFWSSLRKGFYDG 17 (26)
T ss_dssp CCHHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHHhhcccc
Confidence 57888899999999974
No 16
>1aep_A Apolipophorin III; lipoprotein; 2.70A {Locusta migratoria} SCOP: a.63.1.1
Probab=32.58 E-value=38 Score=24.37 Aligned_cols=38 Identities=11% Similarity=0.063 Sum_probs=27.6
Q ss_pred CCCCcHHHHHHHHHHhhhccCChhhhcCCCHHHHHHHH
Q psy12140 5 TSDGSWVNTHWAIRAGIFDVVPASCLENLTPEDFRLLL 42 (173)
Q Consensus 5 ~~~~~v~~q~~af~~Gf~~vip~~~L~~f~~~Elell~ 42 (173)
+..|||++|+.||.+.+..-|....-++=-...|..|-
T Consensus 65 khqgsvaeqlnafarnlnnsihdaatslnlqdqlnslq 102 (161)
T 1aep_A 65 KHQGSVAEQLNAFARNLNNSIHDAATSLNLQDQLNSLQ 102 (161)
T ss_dssp TCCTHHHHHHHHHHHHHHHTTSSSSCCSSHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHhhhhHHHHHhcccHHHHHHHHH
Confidence 56799999999999999988876655443344444443
No 17
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=24.16 E-value=56 Score=18.15 Aligned_cols=18 Identities=11% Similarity=0.324 Sum_probs=14.9
Q ss_pred HHHHHHHHHh--cCCHHHhh
Q psy12140 154 FKRWLWSIVE--KMTHLERM 171 (173)
Q Consensus 154 ~i~wFW~vv~--~~~~~~r~ 171 (173)
--+-|.+|++ .+|+++|-
T Consensus 5 qQnaFYevLh~~nLtEeQrn 24 (34)
T 1l6x_B 5 CQRRFYEALHDPNLNEEQRN 24 (34)
T ss_dssp HHHHHHHHHHCTTCCHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHH
Confidence 3578999997 89999884
Done!