RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12140
         (173 letters)



>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus
           with.  E3 ubiquitin-protein ligases. Can bind to E2
           enzymes.
          Length = 328

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 9/111 (8%)

Query: 16  AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
           A R G  +V+P + L+   PE+  LL+ G  +I+V  L S T +       S+ +    +
Sbjct: 187 AFREGFSEVIPENLLKLFDPEELELLICGSPEIDVDDLKSNTEYKGGYSANSQTI----K 242

Query: 76  WLWSIVEKMTHLERMDL-----GCAIAIRAGIFDVVPASCLENLTPEDFRL 121
           W W +VE  T+ ER  L     G +     G   + P   +     +D RL
Sbjct: 243 WFWEVVESFTNEERRKLLQFVTGSSRLPVGGFAALSPKFTIRKAGSDDERL 293



 Score = 71.5 bits (176), Expect = 3e-15
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 97  AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 156
           A R G  +V+P + L+   PE+  LL+ G  +I+V  L S T +       S+ +    +
Sbjct: 187 AFREGFSEVIPENLLKLFDPEELELLICGSPEIDVDDLKSNTEYKGGYSANSQTI----K 242

Query: 157 WLWSIVEKMTHLERMDL 173
           W W +VE  T+ ER  L
Sbjct: 243 WFWEVVESFTNEERRKL 259


>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase).  The name
           HECT comes from Homologous to the E6-AP Carboxyl
           Terminus.
          Length = 298

 Score = 64.2 bits (157), Expect = 9e-13
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 16  AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
           A R G + V+P   L   TPE+  LL+ G  +I+V  L   T +     + S       +
Sbjct: 156 AFREGFYSVIPKELLSLFTPEELELLICGSPEIDVEDLKKNTEYDGGYSKNS----PTIK 211

Query: 76  WLWSIVEKMTHLERMDL 92
           W W ++E+ T  ER   
Sbjct: 212 WFWEVLEEFTQEERRKF 228



 Score = 64.2 bits (157), Expect = 9e-13
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 97  AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 156
           A R G + V+P   L   TPE+  LL+ G  +I+V  L   T +     + S       +
Sbjct: 156 AFREGFYSVIPKELLSLFTPEELELLICGSPEIDVEDLKKNTEYDGGYSKNS----PTIK 211

Query: 157 WLWSIVEKMTHLERMDL 173
           W W ++E+ T  ER   
Sbjct: 212 WFWEVLEEFTQEERRKF 228


>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a
           subclass of Ubiquitin-protein ligase (E3). It binds
           specific ubiquitin-conjugating enzymes (E2), accepts
           ubiquitin from E2, transfers ubiquitin to substrate
           lysine side chains, and transfers additional ubiquitin
           molecules to the end of growing ubiquitin chains.
          Length = 352

 Score = 58.7 bits (143), Expect = 9e-11
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 16  AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 75
           A R G  +V+P   L   TPE+  LL+ G  DI++  L   T +               +
Sbjct: 210 AFRDGFSEVIPEELLSLFTPEELELLICGSEDIDLEDLKKNTEY----KGGYSSDSPTIQ 265

Query: 76  WLWSIVEKMTHLER 89
           W W ++E  T+ ER
Sbjct: 266 WFWEVLESFTNEER 279



 Score = 58.7 bits (143), Expect = 9e-11
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 97  AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKR 156
           A R G  +V+P   L   TPE+  LL+ G  DI++  L   T +               +
Sbjct: 210 AFRDGFSEVIPEELLSLFTPEELELLICGSEDIDLEDLKKNTEY----KGGYSSDSPTIQ 265

Query: 157 WLWSIVEKMTHLER 170
           W W ++E  T+ ER
Sbjct: 266 WFWEVLESFTNEER 279


>gnl|CDD|224617 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related
           GTPases of G3E family [Amino acid transport and
           metabolism].
          Length = 323

 Score = 26.5 bits (59), Expect = 8.0
 Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 43  NGVGDINVTVLISYTSFIDESGEPSE-RLIKFKRWLWSIVEKM 84
            G+ ++    +  +  F+ ESG  +E R  ++  W+ ++V   
Sbjct: 240 EGIDEL-WDAIEDHRKFLTESGLFTEKRRTQYVEWIRTLVRDE 281



 Score = 26.5 bits (59), Expect = 8.0
 Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 124 NGVGDINVTVLISYTSFIDESGEPSE-RLIKFKRWLWSIVEKM 165
            G+ ++    +  +  F+ ESG  +E R  ++  W+ ++V   
Sbjct: 240 EGIDEL-WDAIEDHRKFLTESGLFTEKRRTQYVEWIRTLVRDE 281


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0769    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,333,876
Number of extensions: 890838
Number of successful extensions: 777
Number of sequences better than 10.0: 1
Number of HSP's gapped: 771
Number of HSP's successfully gapped: 10
Length of query: 173
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 83
Effective length of database: 6,945,742
Effective search space: 576496586
Effective search space used: 576496586
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.9 bits)