RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12140
         (173 letters)



>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 350

 Score = 38.2 bits (88), Expect = 2e-04
 Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 5/80 (6%)

Query: 14  HWAIRAGIFDVVPASCLENL-TPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIK 72
             A R G   V   S L+ L  PE+  LL+ G  +++   L   T +       S     
Sbjct: 211 FKAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDS----V 266

Query: 73  FKRWLWSIVEKMTHLERMDL 92
             R  W IV   T  ++   
Sbjct: 267 LIREFWEIVHSFTDEQKRLF 286



 Score = 36.7 bits (84), Expect = 8e-04
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 97  AIRAGIFDVVPASCLENL-TPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFK 155
           A R G   V   S L+ L  PE+  LL+ G  +++   L   T +       S       
Sbjct: 213 AFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDS----VLI 268

Query: 156 RWLWSIVEKMTHLERMDL 173
           R  W IV   T  ++   
Sbjct: 269 REFWEIVHSFTDEQKRLF 286


>d2eiaa2 a.73.1.1 (A:17-147) EIAV capsid protein p26 {Equine
          infectious anemia virus [TaxId: 11665]}
          Length = 131

 Score = 25.5 bits (56), Expect = 2.2
 Identities = 4/17 (23%), Positives = 7/17 (41%)

Query: 31 ENLTPEDFRLLLNGVGD 47
           + T E+    L+ V  
Sbjct: 30 VDCTSEEMNAFLDVVPG 46



 Score = 25.5 bits (56), Expect = 2.2
 Identities = 4/17 (23%), Positives = 7/17 (41%)

Query: 112 ENLTPEDFRLLLNGVGD 128
            + T E+    L+ V  
Sbjct: 30  VDCTSEEMNAFLDVVPG 46


>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase,
           middle domain {Methylophilus methylotrophus, w3a1
           [TaxId: 17]}
          Length = 233

 Score = 24.4 bits (51), Expect = 9.0
 Identities = 6/22 (27%), Positives = 9/22 (40%)

Query: 92  LGCAIAIRAGIFDVVPASCLEN 113
           +GC + I        P  C +N
Sbjct: 6   IGCNVCISRWEIGGPPMICTQN 27


>d1sv0c_ a.60.1.1 (C:) Modulator of the activity of Ets (MAE,
          CG15085-PA) {Fruit fly (Drosophila melanogaster)
          [TaxId: 7227]}
          Length = 82

 Score = 23.2 bits (50), Expect = 9.7
 Identities = 4/48 (8%), Positives = 12/48 (25%), Gaps = 11/48 (22%)

Query: 10 WVNTHWAIRAGIFDVVPASC---------LENLTPEDFRLLLNGVGDI 48
          W+           +V              L  ++ + +   +   G +
Sbjct: 22 WLINMAVSEG--LEVTAELPQKFPMNGKALCLMSLDMYLCRVPVGGKM 67


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0638    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 724,774
Number of extensions: 34886
Number of successful extensions: 74
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 8
Length of query: 173
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,322,926
Effective search space: 124355044
Effective search space used: 124355044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)