Query psy12141
Match_columns 142
No_of_seqs 104 out of 249
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 19:46:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12141.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12141hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lkx_A Transcription factor BT 100.0 1.4E-36 4.7E-41 207.1 6.0 66 60-125 1-66 (66)
2 3mcb_B Transcription factor BT 100.0 1.3E-32 4.5E-37 183.3 5.7 58 60-117 1-58 (58)
3 3mcb_A Nascent polypeptide-ass 99.8 7.6E-22 2.6E-26 129.6 4.1 53 54-106 1-53 (54)
4 3mce_A Nascent polypeptide-ass 99.8 5.7E-22 2E-26 133.1 2.9 55 53-107 6-60 (61)
5 1tr8_A Conserved protein (MTH1 99.6 4.2E-16 1.4E-20 113.4 3.1 53 53-106 2-58 (102)
6 1eej_A Thiol:disulfide interch 54.1 30 0.001 25.7 5.9 24 48-71 2-32 (216)
7 2dhx_A Poly (ADP-ribose) polym 53.9 11 0.00038 27.0 3.3 66 33-99 7-73 (104)
8 3j21_Y 50S ribosomal protein L 41.7 14 0.00047 27.8 2.3 56 45-111 13-69 (155)
9 1vq8_W 50S ribosomal protein L 34.0 25 0.00086 26.4 2.6 55 46-111 12-67 (154)
10 4a17_V RPL7, 60S ribosomal pro 31.3 35 0.0012 27.5 3.2 56 45-111 90-146 (239)
11 1otr_A Protein CUE2; protein-p 30.9 9.6 0.00033 23.7 -0.2 13 101-113 6-18 (49)
12 3qqm_A MLR3007 protein; struct 30.1 31 0.001 26.4 2.6 46 63-116 134-182 (221)
13 2zgi_A Putative 4-amino-4-deox 27.0 29 0.001 26.7 2.0 53 64-132 143-195 (246)
14 3iz5_e 60S ribosomal protein L 25.8 36 0.0012 27.5 2.4 56 45-111 95-151 (244)
15 4g6v_A Adhesin/hemolysin; tRNA 25.5 44 0.0015 26.0 2.7 32 51-82 141-172 (176)
16 2d74_B Translation initiation 24.1 48 0.0016 24.8 2.6 30 86-115 73-102 (148)
17 1t3b_A Thiol:disulfide interch 24.0 52 0.0018 24.4 2.8 22 50-71 4-32 (211)
18 2hzc_A Splicing factor U2AF 65 23.4 1.3E+02 0.0043 18.3 4.2 54 46-99 18-79 (87)
19 3h2t_A Baseplate structural pr 23.1 20 0.00069 30.5 0.4 17 67-83 295-311 (335)
20 1iye_A Branched-chain amino ac 22.2 53 0.0018 26.0 2.7 45 64-116 178-224 (309)
21 3izc_e 60S ribosomal protein R 22.0 37 0.0013 27.4 1.7 56 45-111 93-149 (244)
22 3b47_A GSU0582, methyl-accepti 21.9 67 0.0023 22.7 3.0 32 46-79 29-60 (134)
23 1i2k_A 4-amino-4-deoxychorisma 21.9 40 0.0014 26.2 1.9 45 64-116 157-203 (269)
24 1nee_A EIF-2-beta, probable tr 21.7 49 0.0017 24.4 2.2 30 86-115 71-100 (138)
25 2eiy_A ILVE, branched-chain am 21.6 45 0.0016 26.4 2.2 45 64-116 177-222 (308)
26 3ceb_A D-aminoacid aminotransf 21.5 34 0.0012 25.2 1.3 44 63-116 117-161 (194)
27 3u0g_A Putative branched-chain 20.1 93 0.0032 25.3 3.8 44 64-115 200-244 (328)
No 1
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=207.10 Aligned_cols=66 Identities=71% Similarity=1.078 Sum_probs=63.3
Q ss_pred CCCCCCceeEEEEeeCcEEEEecCCceeeeccCCeEEEecccchhhhhhhhhHhhhccChhhHHHH
Q psy12141 60 VNTIPGIEEVNMIKEDGTIIHFNNPKAQASLAANTFAITGHGETREITEMLPGILSQLGPEGLTQL 125 (142)
Q Consensus 60 ~~~i~gIeEVnm~k~dgtvihF~~PkVqaS~~sNTfvV~G~~e~K~l~emlP~Il~QlG~d~l~~L 125 (142)
+++|+||+||||||+||+||||+|||||||+++|||+|+|++|+|+|+||||+||+|||||+|++|
T Consensus 1 v~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNT~vv~G~~e~K~l~ellP~Il~qlG~d~l~~l 66 (66)
T 3lkx_A 1 VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSL 66 (66)
T ss_dssp CEECCCEEEEEEEETTSEEEEEESCEEEEECC-CEEEEESCEEEEEGGGGTTGGGGGCCTTHHHHC
T ss_pred CcccCCeeEEEEEecCCEEEEecCcceEEeeccCeeEecCCCEEeEHHHHChhhhhccChhhhhcC
Confidence 578999999999999999999999999999999999999999999999999999999999999875
No 2
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=99.97 E-value=1.3e-32 Score=183.30 Aligned_cols=58 Identities=74% Similarity=1.107 Sum_probs=56.7
Q ss_pred CCCCCCceeEEEEeeCcEEEEecCCceeeeccCCeEEEecccchhhhhhhhhHhhhcc
Q psy12141 60 VNTIPGIEEVNMIKEDGTIIHFNNPKAQASLAANTFAITGHGETREITEMLPGILSQL 117 (142)
Q Consensus 60 ~~~i~gIeEVnm~k~dgtvihF~~PkVqaS~~sNTfvV~G~~e~K~l~emlP~Il~Ql 117 (142)
+++|+||+||||||+||+||||+|||||||+++|||+|+|++|+|+|+||||+||+||
T Consensus 1 v~~i~gIeEVnmfk~dg~vihF~nPkVqaS~~aNTfvv~G~~e~K~l~e~lP~Il~ql 58 (58)
T 3mcb_B 1 VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQL 58 (58)
T ss_dssp CCEECCCCEEEEEETTSEEEEEESCEEEEETTTTEEEEESCEEEEEGGGGTTGGGGGC
T ss_pred CcccCCeeEEEEEecCCEEEEecCcceEEeeccceEEEecCCeeeEHHHHChhhhhcC
Confidence 5789999999999999999999999999999999999999999999999999999997
No 3
>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens} PDB: 3lkx_B
Probab=99.84 E-value=7.6e-22 Score=129.62 Aligned_cols=53 Identities=19% Similarity=0.455 Sum_probs=51.2
Q ss_pred HHhhccCCCCCCceeEEEEeeCcEEEEecCCceeeeccCCeEEEecccchhhh
Q psy12141 54 SLKKLAVNTIPGIEEVNMIKEDGTIIHFNNPKAQASLAANTFAITGHGETREI 106 (142)
Q Consensus 54 ~LkKlg~~~i~gIeEVnm~k~dgtvihF~~PkVqaS~~sNTfvV~G~~e~K~l 106 (142)
+|+|||+++++||+||||+|+++.++||++|+||+|+++|||||||+++.+++
T Consensus 1 al~KLglk~v~gI~rVti~K~~~~lf~i~~P~V~ksp~s~TyvVfGeak~ed~ 53 (54)
T 3mcb_A 1 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDL 53 (54)
T ss_dssp CGGGGTCEECTTEEEEEEESSSSEEEEESSCEEEECTTSSEEEEESCEEEEEC
T ss_pred CccccCCEECCCEEEEEEEeCCCEEEEECCCcEEEcCCCCeEEEEcceeeccC
Confidence 48999999999999999999999999999999999999999999999999876
No 4
>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like structure, NAC, homodimer, chaperone; 2.40A {Homo sapiens}
Probab=99.84 E-value=5.7e-22 Score=133.13 Aligned_cols=55 Identities=18% Similarity=0.440 Sum_probs=49.9
Q ss_pred HHHhhccCCCCCCceeEEEEeeCcEEEEecCCceeeeccCCeEEEecccchhhhh
Q psy12141 53 SSLKKLAVNTIPGIEEVNMIKEDGTIIHFNNPKAQASLAANTFAITGHGETREIT 107 (142)
Q Consensus 53 ~~LkKlg~~~i~gIeEVnm~k~dgtvihF~~PkVqaS~~sNTfvV~G~~e~K~l~ 107 (142)
++|+|||+++++||+||||+|+++.++||++|+||+|+++|||||||+++.++++
T Consensus 6 kal~KLglk~v~gI~rVtirK~~~~lf~i~~PdV~ksp~snTyvVFGeak~ed~~ 60 (61)
T 3mce_A 6 PEFSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 60 (61)
T ss_dssp CCGGGTTCEECSSEEEEEEEETTTEEEEESSCEEEEC---CEEEEESCEEEECCC
T ss_pred HHHHHcCCeECCCEEEEEEEecCCEEEEECCCcEEEcCCCCeEEEEcccccccCC
Confidence 4699999999999999999999999999999999999999999999999999875
No 5
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=99.59 E-value=4.2e-16 Score=113.43 Aligned_cols=53 Identities=26% Similarity=0.508 Sum_probs=43.0
Q ss_pred HHHhhccC--CCCCCceeEEEEeeCcEEEEecCCceee--eccCCeEEEecccchhhh
Q psy12141 53 SSLKKLAV--NTIPGIEEVNMIKEDGTIIHFNNPKAQA--SLAANTFAITGHGETREI 106 (142)
Q Consensus 53 ~~LkKlg~--~~i~gIeEVnm~k~dgtvihF~~PkVqa--S~~sNTfvV~G~~e~K~l 106 (142)
.+|+|||+ ++|+||+||+|+++| .+|||++|+||+ |+++|||+|||+++++++
T Consensus 2 k~lkKLGl~~~~I~gV~eV~i~k~d-~~iv~~~P~V~~~~~~~~~Ty~I~Ge~~~~d~ 58 (102)
T 1tr8_A 2 SHMKQMGMDMKDLRGVEEVVIKLKR-KEIIIKNPKVNVMEFMGQKTYQVTGKARERSL 58 (102)
T ss_dssp --------CCEEECCCCEEEEECSS-EEEEEESCEEEEEEETTEEEEEEESCEEEEEE
T ss_pred chHHHcCCCceeCCCcEEEEEEeCC-EEEEECCCEEEEEcCCCCcEEEEEcCceeecc
Confidence 35999999 899999999999999 999999999997 899999999999999865
No 6
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=54.07 E-value=30 Score=25.73 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=17.0
Q ss_pred cHHHHHHHhhccC-------CCCCCceeEEE
Q psy12141 48 DKKLQSSLKKLAV-------NTIPGIEEVNM 71 (142)
Q Consensus 48 dKKlq~~LkKlg~-------~~i~gIeEVnm 71 (142)
+..++.+|+++|+ .+++|+-||.+
T Consensus 2 ~~~~~~~l~~~~~~v~~v~~~p~~Gl~~v~~ 32 (216)
T 1eej_A 2 DAAIQQTLAKMGIKSSDIQPAPVAGMKTVLT 32 (216)
T ss_dssp HHHHHHHHHHTTCCEEEEEECSSTTEEEEEE
T ss_pred hHHHHHHHHHcCCceeeeecCCCCCcEEEEE
Confidence 4556777776554 57889988876
No 7
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.94 E-value=11 Score=26.99 Aligned_cols=66 Identities=14% Similarity=0.125 Sum_probs=43.4
Q ss_pred cccccccccCCCCcccHHHHHHHhhccCCCCCCceeEEEEeeCcEEEEecCCceeeeccCC-eEEEec
Q psy12141 33 PRRKKKVVHTTAATDDKKLQSSLKKLAVNTIPGIEEVNMIKEDGTIIHFNNPKAQASLAAN-TFAITG 99 (142)
Q Consensus 33 ~RRKkK~vh~~a~~ddKKlq~~LkKlg~~~i~gIeEVnm~k~dgtvihF~~PkVqaS~~sN-TfvV~G 99 (142)
+.++..+..-....+|.+|...+.+-.-+-=..|+.|.-+. ++.+|.|.+|+|-..+-++ .+.+.|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-~~AvItF~d~~va~rVL~k~~H~L~~ 73 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-CGGVLTFREPADAERVLAQADHELHG 73 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-TEEEEEESSHHHHHHHHTCSCCBSSS
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-CcEEEEEcChHHHHHHhcCCcceecC
Confidence 45555666555567888998888774322233566666665 8899999999996665454 444444
No 8
>3j21_Y 50S ribosomal protein L30P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=41.74 E-value=14 Score=27.82 Aligned_cols=56 Identities=13% Similarity=0.248 Sum_probs=45.5
Q ss_pred CcccHHHHHHHhhccCCCCCCceeEEEEeeCcEEEEecCCceeeecc-CCeEEEecccchhhhhhhhh
Q psy12141 45 ATDDKKLQSSLKKLAVNTIPGIEEVNMIKEDGTIIHFNNPKAQASLA-ANTFAITGHGETREITEMLP 111 (142)
Q Consensus 45 ~~ddKKlq~~LkKlg~~~i~gIeEVnm~k~dgtvihF~~PkVqaS~~-sNTfvV~G~~e~K~l~emlP 111 (142)
..-..+.+.+|+-||+..|.- .|++=++|.+..-+. -.-||..|++..+++.||+-
T Consensus 13 ig~~~~~r~tL~~LgL~ki~~-----------~v~~~~tp~~~gMl~kV~~lV~vgep~~ksv~eLi~ 69 (155)
T 3j21_Y 13 VNVKRPVRDTLAMLRLHRVNH-----------CVIVDDTPSYLGMLQKAKDYITWGEINAETLAKLIR 69 (155)
T ss_dssp TTCCHHHHHHHHHTTCCSTTE-----------EEEEECCHHHHHHHHHHTTTEEEEECCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCcCCC-----------EEEEcCCHHHHHHHHhhhcceEEEcCCHHHHHHHHH
Confidence 345678999999999998754 667778888877654 57899999999999999864
No 9
>1vq8_W 50S ribosomal protein L30P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.59.1.1 PDB: 1jj2_V 1k73_X* 1k8a_X* 1k9m_X* 1kc8_X* 1kd1_X* 1kqs_V* 1m1k_X* 1m90_X* 1n8r_X* 1nji_X* 1q7y_X* 1q81_X* 1q82_X* 1q86_X* 1qvf_V 1qvg_V 1s72_W* 1vq4_W* 1vq5_W* ...
Probab=33.97 E-value=25 Score=26.39 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=43.0
Q ss_pred cccHHHHHHHhhccCCCCCCceeEEEEeeCcEEEEecCCceeeecc-CCeEEEecccchhhhhhhhh
Q psy12141 46 TDDKKLQSSLKKLAVNTIPGIEEVNMIKEDGTIIHFNNPKAQASLA-ANTFAITGHGETREITEMLP 111 (142)
Q Consensus 46 ~ddKKlq~~LkKlg~~~i~gIeEVnm~k~dgtvihF~~PkVqaS~~-sNTfvV~G~~e~K~l~emlP 111 (142)
.-..+.+.+|+-||++.|.- .|++=++|.+..-+. -.-||..|++..+++.||+-
T Consensus 12 g~~~~~r~tL~~LgL~ki~~-----------~v~~~~tp~~~gMl~kV~~~V~vge~~l~sv~~Li~ 67 (154)
T 1vq8_W 12 NMHTDIQDTLEMLNIHHVNH-----------CTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLA 67 (154)
T ss_dssp TSCHHHHHHHHHTTCCSTTE-----------EEEECCCHHHHHHHHHSGGGEEEECCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCcCCC-----------EEEEeCCHHHHHHHHhhCceEEEecCchhhHHHHHH
Confidence 44677899999999998754 556667787766554 56889999999999999754
No 10
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_V 4a1c_V 4a1e_V
Probab=31.29 E-value=35 Score=27.46 Aligned_cols=56 Identities=9% Similarity=0.106 Sum_probs=44.2
Q ss_pred CcccHHHHHHHhhccCCCCCCceeEEEEeeCcEEEEecCCceeeecc-CCeEEEecccchhhhhhhhh
Q psy12141 45 ATDDKKLQSSLKKLAVNTIPGIEEVNMIKEDGTIIHFNNPKAQASLA-ANTFAITGHGETREITEMLP 111 (142)
Q Consensus 45 ~~ddKKlq~~LkKlg~~~i~gIeEVnm~k~dgtvihF~~PkVqaS~~-sNTfvV~G~~e~K~l~emlP 111 (142)
..-..+.+.+|+.||+..|.- .|++=.+|.+..-+. -.-||..|++..+++.||+-
T Consensus 90 ig~~~~~rktL~~LgL~ki~~-----------~Vfvk~npa~~gMLr~V~pyV~~G~pnlksv~eLi~ 146 (239)
T 4a17_V 90 NQLHPDVKRVLRLFRLRQLHN-----------GAFFRVNKASLNMIKRVLPFITFGYPTRNTISKLIY 146 (239)
T ss_dssp SSCCHHHHHHHHHTTCCBTTE-----------EEEEECCHHHHHTTGGGGGGEEEECCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCccCC-----------eEEEeCCHHHHHHHHHhhhceeeecCCHHHHHHHHH
Confidence 456788999999999998764 556666777766554 57899999999999999864
No 11
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=30.93 E-value=9.6 Score=23.69 Aligned_cols=13 Identities=23% Similarity=0.531 Sum_probs=10.4
Q ss_pred cchhhhhhhhhHh
Q psy12141 101 GETREITEMLPGI 113 (142)
Q Consensus 101 ~e~K~l~emlP~I 113 (142)
.+.+.|.||||++
T Consensus 6 ~~v~~L~EMFP~~ 18 (49)
T 1otr_A 6 SKLSILMDMFPAI 18 (49)
T ss_dssp HHHHHHHHHCSSS
T ss_pred HHHHHHHHHCCCC
Confidence 3566899999987
No 12
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Probab=30.12 E-value=31 Score=26.38 Aligned_cols=46 Identities=30% Similarity=0.434 Sum_probs=33.4
Q ss_pred CCCceeEEEEeeCcEEEEecCCceeeeccCCeEEEec--ccchhhhhh-hhhHhhhc
Q psy12141 63 IPGIEEVNMIKEDGTIIHFNNPKAQASLAANTFAITG--HGETREITE-MLPGILSQ 116 (142)
Q Consensus 63 i~gIeEVnm~k~dgtvihF~~PkVqaS~~sNTfvV~G--~~e~K~l~e-mlP~Il~Q 116 (142)
-.|.+|+-|+..||.|.. ...+|.|++.| .--|-+++. +||||.-+
T Consensus 134 ~~g~~e~l~l~~~g~v~E--------~s~sNif~~~~~~~l~TP~~~~~~L~GitR~ 182 (221)
T 3qqm_A 134 VTQADEVLLANERGEICE--------GTITNVFADFGDGVLATPRLDCGLLPGVLRA 182 (221)
T ss_dssp TTTCSEEEEEBTTSCEEE--------ESSCEEEEECSSSCEEEECGGGTCCCCHHHH
T ss_pred hcCCcEEEEECCCCeEEE--------cCceeEEEEeCCCEEECCCCccCcchHHHHH
Confidence 368899988877887665 55899999976 344555665 88888643
No 13
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus}
Probab=27.05 E-value=29 Score=26.71 Aligned_cols=53 Identities=13% Similarity=0.101 Sum_probs=35.5
Q ss_pred CCceeEEEEeeCcEEEEecCCceeeeccCCeEEEecccchhhhhhhhhHhhhccChhhHHHHHHHHHHh
Q psy12141 64 PGIEEVNMIKEDGTIIHFNNPKAQASLAANTFAITGHGETREITEMLPGILSQLGPEGLTQLKRLATSV 132 (142)
Q Consensus 64 ~gIeEVnm~k~dgtvihF~~PkVqaS~~sNTfvV~G~~e~K~l~emlP~Il~QlG~d~l~~L~~lae~~ 132 (142)
.|.+|+-|...+|.|.. ...+|.|++.|.-=.-+ ..+||||.- ..+-++|+.+
T Consensus 143 ~g~de~l~ld~~G~v~E--------gs~sNif~v~~g~l~TP-~~iL~GitR-------~~ll~~a~~~ 195 (246)
T 2zgi_A 143 EGAFEGLLLDAFGHVVD--------GSRTSPLLFREGTLYLL-EGGLEGITR-------EKVAEAARGL 195 (246)
T ss_dssp TTCSEEEEECTTSCEEE--------ESSSEEEEEETTEEEEE-CSSCCCHHH-------HHHHHHHHHT
T ss_pred cCCCEEEEECCCCCEEE--------cCCeEEEEEECCEEECC-CCccCcHHH-------HHHHHHHHHC
Confidence 67888888777886554 55789998876433334 678888864 3455555543
No 14
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_e
Probab=25.83 E-value=36 Score=27.46 Aligned_cols=56 Identities=14% Similarity=0.152 Sum_probs=44.4
Q ss_pred CcccHHHHHHHhhccCCCCCCceeEEEEeeCcEEEEecCCceeeecc-CCeEEEecccchhhhhhhhh
Q psy12141 45 ATDDKKLQSSLKKLAVNTIPGIEEVNMIKEDGTIIHFNNPKAQASLA-ANTFAITGHGETREITEMLP 111 (142)
Q Consensus 45 ~~ddKKlq~~LkKlg~~~i~gIeEVnm~k~dgtvihF~~PkVqaS~~-sNTfvV~G~~e~K~l~emlP 111 (142)
..-..+.+.+|+-||+..|.- .|++=.+|.+..-+. -.-||..|++..+++.||+-
T Consensus 95 ig~~~~~rktL~~LgL~ki~~-----------~Vfv~~npa~~gML~~V~pyV~~G~pnlksv~eLi~ 151 (244)
T 3iz5_e 95 NAMHPKTKKILQLLRLRQIFN-----------GVFLKVNKATINMLRRVEPYVTYGYPNLKSVRELIY 151 (244)
T ss_dssp TTSCHHHHHHHHHTCCCSTTE-----------EEEECSCHHHHHHHTTTGGGCEEECCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCccCC-----------EEEEeCCHHHHHHHHHhhcceeeecCCHHHHHHHHH
Confidence 356778999999999998754 556667787766554 67899999999999999864
No 15
>4g6v_A Adhesin/hemolysin; tRNAse, toxin, immunity; 2.64A {Burkholderia pseudomallei 1026A}
Probab=25.50 E-value=44 Score=26.03 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=25.4
Q ss_pred HHHHHhhccCCCCCCceeEEEEeeCcEEEEec
Q psy12141 51 LQSSLKKLAVNTIPGIEEVNMIKEDGTIIHFN 82 (142)
Q Consensus 51 lq~~LkKlg~~~i~gIeEVnm~k~dgtvihF~ 82 (142)
++..++.|.=.+|+|.+||.++..+|+|+++.
T Consensus 141 ~~~i~~ql~~~PI~GL~ev~II~K~g~i~~i~ 172 (176)
T 4g6v_A 141 PAAIEAQINSYPIPGLGKVIVIDKLGNITIIK 172 (176)
T ss_dssp HHHHHHHHHHSCCTTCCCEEEECTTCCEEEEC
T ss_pred HHHHHHHhccCCCCCcceeEEEecCCcEEEec
Confidence 55666666667999999999998888888753
No 16
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=24.14 E-value=48 Score=24.83 Aligned_cols=30 Identities=13% Similarity=0.180 Sum_probs=24.5
Q ss_pred eeeeccCCeEEEecccchhhhhhhhhHhhh
Q psy12141 86 AQASLAANTFAITGHGETREITEMLPGILS 115 (142)
Q Consensus 86 VqaS~~sNTfvV~G~~e~K~l~emlP~Il~ 115 (142)
.+.++..+.++|.|..+.+.|+++|-..+.
T Consensus 73 t~g~id~~rlii~G~~~~~~i~~~L~~yI~ 102 (148)
T 2d74_B 73 TAGTLEGRRVVLQGRFTPYLIANKLKKYIK 102 (148)
T ss_dssp CCEEEETTEEEESSCCCHHHHHHHHHHHHH
T ss_pred CceeecCCEEEEEeeeCHHHHHHHHHHHHH
Confidence 345556789999999999999999877664
No 17
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=24.01 E-value=52 Score=24.41 Aligned_cols=22 Identities=18% Similarity=0.372 Sum_probs=13.7
Q ss_pred HHHHHHhhcc-------CCCCCCceeEEE
Q psy12141 50 KLQSSLKKLA-------VNTIPGIEEVNM 71 (142)
Q Consensus 50 Klq~~LkKlg-------~~~i~gIeEVnm 71 (142)
.++.+|+++| ..+++|+-||.+
T Consensus 4 ~~~~~l~~~~~~v~~v~~~~~~Gl~~v~~ 32 (211)
T 1t3b_A 4 AIKRKLQSFNISNIVIKSSPISGIKTAVT 32 (211)
T ss_dssp TTHHHHHTTTCCSCCCCBCSSTTEECCEE
T ss_pred HHHHHHHHcCCceeeeecCCCCCeEEEEE
Confidence 3455555543 357788888876
No 18
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=23.40 E-value=1.3e+02 Score=18.28 Aligned_cols=54 Identities=9% Similarity=0.282 Sum_probs=34.2
Q ss_pred cccHHHHHHHhhc----cCCCCC--CceeEEEEeeCc-EEEEecCCc-eeeeccCCeEEEec
Q psy12141 46 TDDKKLQSSLKKL----AVNTIP--GIEEVNMIKEDG-TIIHFNNPK-AQASLAANTFAITG 99 (142)
Q Consensus 46 ~ddKKlq~~LkKl----g~~~i~--gIeEVnm~k~dg-tvihF~~Pk-VqaS~~sNTfvV~G 99 (142)
.++.-|+..+.+. |+..-+ .|.++.+.++.| -.+.|.+++ .++++.-|-+.+.|
T Consensus 18 ~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~~l~g~~~~g 79 (87)
T 2hzc_A 18 ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQG 79 (87)
T ss_dssp CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHGGGTTCEETT
T ss_pred CCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHHhcCCCEECC
Confidence 4677799999888 655444 577888877766 445677663 34444445555544
No 19
>3h2t_A Baseplate structural protein GP6; viral protein, virion; 3.20A {Enterobacteria phage T4} PDB: 3h3w_A 3h3y_A
Probab=23.07 E-value=20 Score=30.46 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=15.5
Q ss_pred eeEEEEeeCcEEEEecC
Q psy12141 67 EEVNMIKEDGTIIHFNN 83 (142)
Q Consensus 67 eEVnm~k~dgtvihF~~ 83 (142)
.+.|+|..||+.|+|.|
T Consensus 295 ~~~nift~dgslivfen 311 (335)
T 3h2t_A 295 TDDVIFTRDGSLIVFEN 311 (335)
T ss_dssp SCSSEECCSSEEECCCT
T ss_pred cccceeccCCcEEEEec
Confidence 57899999999999986
No 20
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Probab=22.16 E-value=53 Score=25.98 Aligned_cols=45 Identities=27% Similarity=0.318 Sum_probs=31.4
Q ss_pred CCceeEEEEeeCcEEEEecCCceeeeccCCeEEEecc-cchhhhhh-hhhHhhhc
Q psy12141 64 PGIEEVNMIKEDGTIIHFNNPKAQASLAANTFAITGH-GETREITE-MLPGILSQ 116 (142)
Q Consensus 64 ~gIeEVnm~k~dgtvihF~~PkVqaS~~sNTfvV~G~-~e~K~l~e-mlP~Il~Q 116 (142)
.|.+|+-|...+|.|.. ...+|.|++.|. --|-+++. +||||.-+
T Consensus 178 ~G~de~l~ld~~G~V~E--------gs~sNif~v~~g~l~TP~l~~~iL~GitR~ 224 (309)
T 1iye_A 178 HGYQEGIALDVNGYISE--------GAGENLFEVKDGVLFTPPFTSSALPGITRD 224 (309)
T ss_dssp TTCSEEEEECTTSBEEE--------ETTBEEEEEETTEEEECCGGGTCCCCHHHH
T ss_pred cCCCEEEEECCCCcEEE--------cCceEEEEEECCEEECCCCCCCCCCCHHHH
Confidence 57788877777887665 558899988753 34445654 88888643
No 21
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e 3o58_G 3o5h_G 3u5e_F 3u5i_F 4b6a_F
Probab=22.00 E-value=37 Score=27.37 Aligned_cols=56 Identities=13% Similarity=0.067 Sum_probs=43.9
Q ss_pred CcccHHHHHHHhhccCCCCCCceeEEEEeeCcEEEEecCCceeeecc-CCeEEEecccchhhhhhhhh
Q psy12141 45 ATDDKKLQSSLKKLAVNTIPGIEEVNMIKEDGTIIHFNNPKAQASLA-ANTFAITGHGETREITEMLP 111 (142)
Q Consensus 45 ~~ddKKlq~~LkKlg~~~i~gIeEVnm~k~dgtvihF~~PkVqaS~~-sNTfvV~G~~e~K~l~emlP 111 (142)
..-..+.+.+|+-||+..|.- .|++=.+|.+..-+. ..-||..|++..+++.||+-
T Consensus 93 ig~~~~~rktL~~LgL~ki~~-----------~Vfv~~npa~~gMLr~V~pyVt~G~pnlksv~eLi~ 149 (244)
T 3izc_e 93 NKIPPKPRKVLQLLRLTRINS-----------GTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVY 149 (244)
T ss_dssp SSCCHHHHHHHHHHTCCSTTE-----------EEEECSCHHHHHHHHHHTTSCEEECCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCccCC-----------eEEEeCCHHHHHHHHHHhhHhhcccCCHHHHHHHHH
Confidence 456788999999999998754 556666777665543 57899999999999999864
No 22
>3b47_A GSU0582, methyl-accepting chemotaxis protein; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 2.00A {Geobacter sulfurreducens}
Probab=21.94 E-value=67 Score=22.66 Aligned_cols=32 Identities=6% Similarity=0.104 Sum_probs=25.7
Q ss_pred cccHHHHHHHhhccCCCCCCceeEEEEeeCcEEE
Q psy12141 46 TDDKKLQSSLKKLAVNTIPGIEEVNMIKEDGTII 79 (142)
Q Consensus 46 ~ddKKlq~~LkKlg~~~i~gIeEVnm~k~dgtvi 79 (142)
.|...++..+++++ .++||..+-+|..+|.++
T Consensus 29 g~~~~~~~~i~~i~--~~~~I~~irI~~~~g~i~ 60 (134)
T 3b47_A 29 GDMAVIERYVADVR--GKGAVLDLRIYDAAGRPA 60 (134)
T ss_dssp TCHHHHHHHHHHHT--TCCCEEEEEEEETTSCBC
T ss_pred CCHHHHHHHHHHHh--ccCCceEEEEECCCCcEe
Confidence 35566777888776 778999999999999764
No 23
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A*
Probab=21.93 E-value=40 Score=26.15 Aligned_cols=45 Identities=24% Similarity=0.338 Sum_probs=30.8
Q ss_pred CCceeEEEEeeCcEEEEecCCceeeeccCCeEEEecc-cchhhhhh-hhhHhhhc
Q psy12141 64 PGIEEVNMIKEDGTIIHFNNPKAQASLAANTFAITGH-GETREITE-MLPGILSQ 116 (142)
Q Consensus 64 ~gIeEVnm~k~dgtvihF~~PkVqaS~~sNTfvV~G~-~e~K~l~e-mlP~Il~Q 116 (142)
.|.+|+-|...+|.|.. ...+|.|++.|. --|-++.. +||||.-+
T Consensus 157 ~G~de~l~ld~~G~v~E--------~s~sNif~v~~g~l~TP~~~~~iL~GitR~ 203 (269)
T 1i2k_A 157 TNADEALVLDSEGWVTE--------CCAANLFWRKGNVVYTPRLDQAGVNGIMRQ 203 (269)
T ss_dssp SSCSEEEEEBTTSBEEE--------CSSSEEEEEETTEEEEECCSSSSBCCHHHH
T ss_pred CCCCEEEEECCCCcEEE--------cCceEEEEEECCEEECCCCccCccCCHHHH
Confidence 67888877777887665 557899988753 23334543 78888643
No 24
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=21.73 E-value=49 Score=24.43 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=24.6
Q ss_pred eeeeccCCeEEEecccchhhhhhhhhHhhh
Q psy12141 86 AQASLAANTFAITGHGETREITEMLPGILS 115 (142)
Q Consensus 86 VqaS~~sNTfvV~G~~e~K~l~emlP~Il~ 115 (142)
.+.++..+.++|.|..+.+.|+++|-..+.
T Consensus 71 t~g~id~~rlii~G~~~~~~i~~~L~~yI~ 100 (138)
T 1nee_A 71 TAGNLEGGRAILQGKFTHFLINERIEDYVN 100 (138)
T ss_dssp SCCCCBTTTEEEESSCSSSHHHHHHHHHHT
T ss_pred CceeecCCEEEEEeeeCHHHHHHHHHHHHh
Confidence 345556789999999999999999877664
No 25
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Probab=21.59 E-value=45 Score=26.44 Aligned_cols=45 Identities=22% Similarity=0.301 Sum_probs=31.2
Q ss_pred CCceeEEEEeeCcEEEEecCCceeeeccCCeEEEecc-cchhhhhhhhhHhhhc
Q psy12141 64 PGIEEVNMIKEDGTIIHFNNPKAQASLAANTFAITGH-GETREITEMLPGILSQ 116 (142)
Q Consensus 64 ~gIeEVnm~k~dgtvihF~~PkVqaS~~sNTfvV~G~-~e~K~l~emlP~Il~Q 116 (142)
.|.+|+-|...+|.|.. ...+|.|++.|. --|-++..+||||.-+
T Consensus 177 ~G~de~l~ld~~G~V~E--------gs~sNif~v~~g~l~TP~~~~iL~GitR~ 222 (308)
T 2eiy_A 177 AGADEALLLDEEGYVAE--------GSGENLFFVRDGVIYALEHSVNLEGITRD 222 (308)
T ss_dssp TTCSEEEEEBTTSSEEE--------ESSCEEEEEETTEEEEECCTTSCCCHHHH
T ss_pred cCCCEEEEECCCCeEEE--------cCceEEEEEECCEEEeCCcCCCCchHHHH
Confidence 57888878777777665 557899988753 3334554589998643
No 26
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Probab=21.51 E-value=34 Score=25.24 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=29.8
Q ss_pred CCCceeEEEEeeCcEEEEecCCceeeeccCCeEEEeccc-chhhhhhhhhHhhhc
Q psy12141 63 IPGIEEVNMIKEDGTIIHFNNPKAQASLAANTFAITGHG-ETREITEMLPGILSQ 116 (142)
Q Consensus 63 i~gIeEVnm~k~dgtvihF~~PkVqaS~~sNTfvV~G~~-e~K~l~emlP~Il~Q 116 (142)
-.|.+|+-|. .+|.|.. ...+|.|++.|.- -|-+ ..+||||.-+
T Consensus 117 ~~g~de~l~l-~~G~v~E--------~s~sNif~~~~g~l~TP~-~~~L~GitR~ 161 (194)
T 3ceb_A 117 KEECDEIMII-RQGKVTD--------CSIGNLIFRQNNQWITPD-KPLLEGTQRA 161 (194)
T ss_dssp GTTSSEEEEE-ETTEECC--------CSSSEEEEEETTEEEEES-SCSSCCHHHH
T ss_pred hCCCCEEEEE-eCCEEEE--------eccEEEEEEECCEEECCC-CCCcChHHHH
Confidence 3678898888 8887554 5578999887532 2223 5678888643
No 27
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei}
Probab=20.07 E-value=93 Score=25.33 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=30.5
Q ss_pred CCceeEEEEeeCcEEEEecCCceeeeccCCeEEEecc-cchhhhhhhhhHhhh
Q psy12141 64 PGIEEVNMIKEDGTIIHFNNPKAQASLAANTFAITGH-GETREITEMLPGILS 115 (142)
Q Consensus 64 ~gIeEVnm~k~dgtvihF~~PkVqaS~~sNTfvV~G~-~e~K~l~emlP~Il~ 115 (142)
.|.+|+-|...+|.|.. ...+|.|++.|. --|-+++.+||||.-
T Consensus 200 ~G~~e~l~ld~~g~v~E--------~~~sNif~v~~g~l~TP~~~~iL~GitR 244 (328)
T 3u0g_A 200 DGYDEALLLDVDGYVSE--------GSGENFFLVNRGKLYTPDLASCLDGITR 244 (328)
T ss_dssp TTCSEEEEECTTSCEEE--------ESSSEEEEEETTEEEECCSSSSCCCHHH
T ss_pred CCCCEEEEECCCCcEEE--------cCceeEEEEECCEEEeCCccccchHHHH
Confidence 56788877766776554 568899988753 334456558899864
Done!