RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12141
(142 letters)
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo
sapiens}
Length = 66
Score = 118 bits (297), Expect = 3e-36
Identities = 47/66 (71%), Positives = 53/66 (80%)
Query: 60 VNTIPGIEEVNMIKEDGTIIHFNNPKAQASLAANTFAITGHGETREITEMLPGILSQLGP 119
VN I GIEEVNM GT+IHFNNPK QASLAANTF ITGH ET+++TEMLP IL+QLG
Sbjct: 1 VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGA 60
Query: 120 EGLTQL 125
+ LT L
Sbjct: 61 DSLTSL 66
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC,
heterodimer, chaperone; 1.90A {Homo sapiens}
Length = 58
Score = 107 bits (269), Expect = 4e-32
Identities = 43/58 (74%), Positives = 48/58 (82%)
Query: 60 VNTIPGIEEVNMIKEDGTIIHFNNPKAQASLAANTFAITGHGETREITEMLPGILSQL 117
VN I GIEEVNM GT+IHFNNPK QASLAANTF ITGH ET+++TEMLP IL+QL
Sbjct: 1 VNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQL 58
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 42.6 bits (99), Expect = 5e-06
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 15/43 (34%)
Query: 36 KKKVVHTTAATDDKKLQSSLKKLAVNTIPGIEEVNMIKEDGTI 78
K+ + KKLQ+SLK A ++ P + IK T+
Sbjct: 19 KQAL---------KKLQASLKLYADDSAPALA----IK--ATM 46
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 2e-04
Identities = 20/120 (16%), Positives = 31/120 (25%), Gaps = 53/120 (44%)
Query: 65 GIEEVNMIKE---------------DG--------TI--IHFNNPKAQA---------SL 90
G +E M + D +I I NNP +
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 91 AANTFAIT------GHGETREITEMLPGILSQL---GPEGL------TQ--LKRLATSVA 133
N A+ G +T +I + + + +GL TQ L A
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPAL--TLMEKA 1742
Score = 36.6 bits (84), Expect = 0.001
Identities = 29/124 (23%), Positives = 39/124 (31%), Gaps = 51/124 (41%)
Query: 8 VVMNPELLKRLQQQAGQVRIGG-KGTPRRKKKVVHTTAATDDKKLQSSLKKLAVNTIPGI 66
V+ NP L + GG KG R+ D KL++ +K+
Sbjct: 1665 VINNP---VNLT-----IHFGGEKGKRIRENYSAMIFETIVDGKLKT--EKI-------F 1707
Query: 67 EEVNMIKEDGTIIHFNNPK--------AQ-----ASLAA-------------NTFAITGH 100
+E+N E T F + K Q AA TFA GH
Sbjct: 1708 KEIN---EHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFA--GH 1762
Query: 101 --GE 102
GE
Sbjct: 1763 SLGE 1766
Score = 32.3 bits (73), Expect = 0.039
Identities = 28/130 (21%), Positives = 40/130 (30%), Gaps = 40/130 (30%)
Query: 11 NPELLKRLQQQAGQVRIGGK--GTPRRKKKVVHTTAATDDKKLQSSLKKLAVNTIPGIEE 68
+ + K L + V K P V T +D L+ L+ + I
Sbjct: 436 SDLINKDLVKN--NVSFNAKDIQIP-----VYDTFDGSD-------LRVLSGSISERI-- 479
Query: 69 VNMIKEDGTIIHFNNPKAQASLAANTFAITGHGETREITEMLPGILSQLGPEGLTQLKRL 128
V+ I + + F T H I + PG S LG LT +
Sbjct: 480 VDCIIRL--PVKWE--------TTTQFKAT-H-----ILDFGPGGASGLGV--LTHRNKD 521
Query: 129 ATSV----AG 134
T V AG
Sbjct: 522 GTGVRVIVAG 531
Score = 30.0 bits (67), Expect = 0.24
Identities = 19/113 (16%), Positives = 33/113 (29%), Gaps = 29/113 (25%)
Query: 40 VHTTAAT---DDKKLQSSLKKLAVNTIPGIEEVNMIKEDGTIIHFNNPKAQASL------ 90
+H AA ++ K+L N I + K+ ++L
Sbjct: 101 IHALAAKLLQENDTTLVKTKELIKNYITARIMAK---------RPFDKKSNSALFRAVGE 151
Query: 91 -AANTFAITGHG---------ETREITEMLPGILSQLGPEGLTQLKRLATSVA 133
A AI G G E R++ + ++ L L L +
Sbjct: 152 GNAQLVAIFG-GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.012
Identities = 24/162 (14%), Positives = 44/162 (27%), Gaps = 40/162 (24%)
Query: 5 DKRVVMNPELLKRLQQQAGQVR---------IGGKGTPRRKKKVVHTTAATDDKKLQSSL 55
K V + +L+Q ++R + G G K K+Q +
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG------KTWVALDVCLSYKVQCKM 180
Query: 56 KKLAVNTIP-GIEEVNM---IKEDGTIIHFNN-----PKAQASLAANTFAITGHGETREI 106
I +N+ + + S + ++ I I
Sbjct: 181 --------DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH--SI 230
Query: 107 TEMLPGIL-SQLGPEGLTQL-----KRLATSVAGMCKNLIVT 142
L +L S+ L L + + CK L+ T
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT 272
>3mcb_A Nascent polypeptide-associated complex subunit Al; beta-barrel like
structure, NAC, heterodimer, chaperone; 1.90A {Homo
sapiens} PDB: 3lkx_B
Length = 54
Score = 29.3 bits (66), Expect = 0.074
Identities = 10/54 (18%), Positives = 25/54 (46%)
Query: 54 SLKKLAVNTIPGIEEVNMIKEDGTIIHFNNPKAQASLAANTFAITGHGETREIT 107
++ KL + + G+ V + K + P S A++T+ + G + +++
Sbjct: 1 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLS 54
>3mce_A Nascent polypeptide-associated complex subunit Al; beta-barrel like
structure, NAC, homodimer, chaperone; 2.40A {Homo
sapiens}
Length = 61
Score = 28.6 bits (64), Expect = 0.17
Identities = 10/54 (18%), Positives = 24/54 (44%)
Query: 55 LKKLAVNTIPGIEEVNMIKEDGTIIHFNNPKAQASLAANTFAITGHGETREITE 108
KL + + G+ V + K + P S A++T+ + G + ++++
Sbjct: 8 FSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQ 61
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Length = 405
Score = 27.7 bits (62), Expect = 1.6
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 5/94 (5%)
Query: 3 KGDKRVVMNPELLKRLQQQAGQVRI-GGKGTPRRKKKVVHTTA---ATDDKKLQSSLKKL 58
+ RV + E +K+L+ V + G G R + A +++ L
Sbjct: 36 PNEGRVAGSVESVKKLKSLGFDVVVEAGAGLGSRIPDQEYEKAGARVGTAADAKTADVIL 95
Query: 59 AVNTIPGIEEVNMIKEDGTIIHFNNPKAQASLAA 92
V P +E++ + +I +P +
Sbjct: 96 KVRR-PSAQEISGYRSGAVVIAIMDPYGNEEAIS 128
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain,
rossmann fold, oxidoreductase; 1.90A {Escherichia coli}
PDB: 1x14_A* 1x15_A* 2bru_A*
Length = 401
Score = 26.9 bits (60), Expect = 2.5
Identities = 19/116 (16%), Positives = 38/116 (32%), Gaps = 10/116 (8%)
Query: 3 KGDKRVVMNPELLKRLQQQAGQVRI-----GGKGTPRRKKKVVHTTAATDDKKLQSSLKK 57
+ RV P+ +++L + V + + + QS +
Sbjct: 18 TNETRVAATPKTVEQLLKLGFTVAVESGAGQLASFDDKAFVQAGAEIVEGNSVWQSEII- 76
Query: 58 LAVNTIPGIEEVNMIKEDGTIIHFNNPKAQASLAANTFAITGHGETREITEMLPGI 113
L VN P +E+ ++ T++ F P L + T + +P I
Sbjct: 77 LKVNA-PLDDEIALLNPGTTLVSFIWPAQNPELMQ---KLAERNVTVMAMDSVPRI 128
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle
structural genomics center for infectious disease, S
tuberculosis; 1.82A {Mycobacterium smegmatis str}
Length = 381
Score = 26.1 bits (58), Expect = 4.9
Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 22/101 (21%)
Query: 3 KGDKRVVMNPELLKRLQQQAGQVRI-GGKGTPRRKKKVVHTTAATDDK-------KLQSS 54
+G++RV + P+++++L + +V + G A D +
Sbjct: 33 EGERRVALVPKVVEKLSARGLEVVVESAAGA----------GALFSDADYERAGATIGDP 82
Query: 55 LKK---LAVNTIPGIEEVNMIKEDGTIIHFNNPKAQASLAA 92
+ VN P +E++ +K +I F P+ Q LA+
Sbjct: 83 WPADVVVKVNP-PTSDEISQLKPGSVLIGFLAPRTQPELAS 122
>3qhb_A Symerythrin, ORF180; four-helix bundle, carboxylate bridged-DIIRON,
ferritin-like superfamily, metal transport; 1.20A
{Cyanophora paradoxa} PDB: 3qhc_A 3sid_A
Length = 179
Score = 25.8 bits (56), Expect = 5.8
Identities = 10/80 (12%), Positives = 19/80 (23%), Gaps = 3/80 (3%)
Query: 55 LKKLAVNTIPGIEEVNMIKEDGTIIHFNNPKAQASLAAN-TFAITGHGETREITEMLPGI 113
+L V E + L A+ ET E + P
Sbjct: 81 YSELEVKDSAETLEAKRLVSTIESQIDAVASDSRGLRRALETAL--EVETIESQKTYPAF 138
Query: 114 LSQLGPEGLTQLKRLATSVA 133
+G ++ ++
Sbjct: 139 AKLAAEQGNMEVATAFEAIV 158
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 25.7 bits (57), Expect = 7.0
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 16/64 (25%)
Query: 24 QVRIGGKGTPRRKKKVVHTTAATDDKKLQSSLKKLAVN-TIPGIEEVNMIKEDGTIIHFN 82
++R G K +++KK VH L S+L A TI I E N KEDG +I
Sbjct: 382 EIRCGIKQQNQQEKKYVHC--------LNSTL--SATERTICCILE-NYQKEDGLVI--- 427
Query: 83 NPKA 86
P+
Sbjct: 428 -PEV 430
>2kdd_A Borealin; protein dimer, cell cycle, cell division, centromere,
chromosomal protein, cytoplasm, mitosis, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 76
Score = 24.4 bits (52), Expect = 8.3
Identities = 9/26 (34%), Positives = 18/26 (69%)
Query: 114 LSQLGPEGLTQLKRLATSVAGMCKNL 139
++QL PE L +K+L+ +A +C ++
Sbjct: 47 IAQLDPEALGNIKKLSNRLAQICSSI 72
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.358
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,085,568
Number of extensions: 118367
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 32
Length of query: 142
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 58
Effective length of database: 4,356,429
Effective search space: 252672882
Effective search space used: 252672882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (23.8 bits)