BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12143
(443 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FP4|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gtp
pdb|2FPG|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gdp
pdb|2FPI|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol
pdb|2FPP|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol With Chloride Ions
Length = 395
Score = 350 bits (897), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 187/389 (48%), Positives = 255/389 (65%), Gaps = 1/389 (0%)
Query: 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAXXXXXXXXX 93
+N+ E+ S L+ + G+ V F VA T EA E AK+LN K+IVLKAQ+LA
Sbjct: 1 MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFS 60
Query: 94 XXXXXXXXMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFM 153
+ PE ++A +MIG L TKQT ++G N VMV E +E Y A +
Sbjct: 61 SGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAIL 120
Query: 154 MERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQALKVADAVG-LKAK 212
M+RS GPVL+ S QGGV+IEEVAA NP I E +DI GI QA ++A+ +G L
Sbjct: 121 MDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPL 180
Query: 213 RDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDLR 272
++ A+ + K+Y LF+ DA+ +E+NP+ E G DAK+ FDDNAEFRQK +F +
Sbjct: 181 QNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMD 240
Query: 273 DWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGA 332
D S+ + E EAAK+ L YI LDG+I C VNGAGLAMAT DII L+GG+PANFLD+GGG
Sbjct: 241 DKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGV 300
Query: 333 TAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTN 392
+QV +AFK++TADPKV AI+VNIFGGI+ C +IA GI A +EL LK+P++ RL+GTN
Sbjct: 301 KESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTN 360
Query: 393 VDDAKVLIASAAMKILPCDNLDEAARLAV 421
V +A+ ++ ++ + I +L++AA+ AV
Sbjct: 361 VHEAQNILTNSGLPITSAVDLEDAAKKAV 389
>pdb|1EUC|B Chain B, Crystal Structure Of Dephosphorylated Pig Heart, Gtp-
Specific Succinyl-Coa Synthetase
Length = 396
Score = 345 bits (884), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 186/389 (47%), Positives = 254/389 (65%), Gaps = 1/389 (0%)
Query: 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAXXXXXXXXX 93
+N+ E+ S L+ + G+ V F VA T EA E AK+LN K+IVLKAQ+LA
Sbjct: 2 VNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFS 61
Query: 94 XXXXXXXXMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFM 153
+ PE ++A +MIG L TKQT ++G N VMV E +E Y A +
Sbjct: 62 SGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAIL 121
Query: 154 MERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQALKVADAVG-LKAK 212
M+RS GPVL+ S QGGV+IEEVAA NP I E +DI GI QA ++A+ +G L
Sbjct: 122 MDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPL 181
Query: 213 RDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDLR 272
++ A+ + K+Y LF+ DA+ +E+NP+ E G DAK+ FDDNAEFRQK +F +
Sbjct: 182 QNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMD 241
Query: 273 DWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGA 332
D S+ + E EAAK+ L YI LDG+I C VNGAGLAMAT DII L+GG+PANFLD+GGG
Sbjct: 242 DKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGV 301
Query: 333 TAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTN 392
+QV +AFK++TADPKV AI+VNIFGGI+ +IA GI A +EL LK+P++ RL+GTN
Sbjct: 302 KESQVYQAFKLLTADPKVEAILVNIFGGIVNXAIIANGITKACRELELKVPLVVRLEGTN 361
Query: 393 VDDAKVLIASAAMKILPCDNLDEAARLAV 421
V +A+ ++ ++ + I +L++AA+ AV
Sbjct: 362 VHEAQNILTNSGLPITSAVDLEDAAKKAV 390
>pdb|1EUD|B Chain B, Crystal Structure Of Phosphorylated Pig Heart,
Gtp-Specific Succinyl-Coa Synthetase
Length = 396
Score = 345 bits (884), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 186/389 (47%), Positives = 254/389 (65%), Gaps = 1/389 (0%)
Query: 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAXXXXXXXXX 93
+N+ E+ S L+ + G+ V F VA T EA E AK+LN K+IVLKAQ+LA
Sbjct: 2 VNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFS 61
Query: 94 XXXXXXXXMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFM 153
+ PE ++A +MIG L TKQT ++G N VMV E +E Y A +
Sbjct: 62 SGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAIL 121
Query: 154 MERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQALKVADAVG-LKAK 212
M+RS GPVL+ S QGGV+IEEVAA NP I E +DI GI QA ++A+ +G L
Sbjct: 122 MDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPL 181
Query: 213 RDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDLR 272
++ A+ + K+Y LF+ DA+ +E+NP+ E G DAK+ FDDNAEFRQK +F +
Sbjct: 182 QNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMD 241
Query: 273 DWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGA 332
D S+ + E EAAK+ L YI LDG+I C VNGAGLAMAT DII L+GG+PANFLD+GGG
Sbjct: 242 DKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGV 301
Query: 333 TAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTN 392
+QV +AFK++TADPKV AI+VNIFGGI+ +IA GI A +EL LK+P++ RL+GTN
Sbjct: 302 KESQVYQAFKLLTADPKVEAILVNIFGGIVNXAIIANGITKAXRELELKVPLVVRLEGTN 361
Query: 393 VDDAKVLIASAAMKILPCDNLDEAARLAV 421
V +A+ ++ ++ + I +L++AA+ AV
Sbjct: 362 VHEAQNILTNSGLPITSAVDLEDAAKKAV 390
>pdb|1SCU|B Chain B, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|1SCU|E Chain E, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|2SCU|B Chain B, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|2SCU|E Chain E, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|1JKJ|B Chain B, E. Coli Scs
pdb|1JKJ|E Chain E, E. Coli Scs
pdb|2NU6|B Chain B, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU6|E Chain E, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|B Chain B, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|E Chain E, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|B Chain B, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|E Chain E, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU9|B Chain B, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|E Chain E, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|G Chain G, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|I Chain I, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NUA|B Chain B, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NUA|E Chain E, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 388
Score = 275 bits (703), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 162/390 (41%), Positives = 231/390 (59%), Gaps = 10/390 (2%)
Query: 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAXXXXXXXXX 93
+N+HE+ + L G+P P T +EA E A K+ V+K QV A
Sbjct: 1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGV 60
Query: 94 XXXXXXXXMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFM 153
+V++ E+ A +G L+T QT G+ N ++V KE Y +
Sbjct: 61 K-------VVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAV 113
Query: 154 MERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQALKVADAVGLKAK- 212
++RS V +AS++GGV IE+VA E P I +D G Q ++A +GL+ K
Sbjct: 114 VDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGKL 173
Query: 213 -RDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDL 271
+ T ++ + + +F+ +D +LIEINP G+ LD K+ D NA FRQ L ++
Sbjct: 174 VQQFT-KIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLREM 232
Query: 272 RDWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGG 331
RD SQED +E +AA+ LNY+ALDG+IGC+VNGAGLAM TMDI+KLHGGEPANFLDVGGG
Sbjct: 233 RDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGG 292
Query: 332 ATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGT 391
AT +V EAFKII +D KV A++VNIFGGI+RCD+IA+GII A E+ + +P++ RL+G
Sbjct: 293 ATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGN 352
Query: 392 NVDDAKVLIASAAMKILPCDNLDEAARLAV 421
N + +A + + I+ L +AA+ V
Sbjct: 353 NAELGAKKLADSGLNIIAAKGLTDAAQQVV 382
>pdb|1CQI|B Chain B, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQI|E Chain E, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQJ|B Chain B, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQJ|E Chain E, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
Length = 385
Score = 275 bits (702), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 162/390 (41%), Positives = 231/390 (59%), Gaps = 10/390 (2%)
Query: 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAXXXXXXXXX 93
+N+HE+ + L G+P P T +EA E A K+ V+K QV A
Sbjct: 1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGV 60
Query: 94 XXXXXXXXMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFM 153
+V++ E+ A +G L+T QT G+ N ++V KE Y +
Sbjct: 61 K-------VVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAV 113
Query: 154 MERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQALKVADAVGLKAK- 212
++RS V +AS++GGV IE+VA E P I +D G Q ++A +GL+ K
Sbjct: 114 VDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGKL 173
Query: 213 -RDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDL 271
+ T ++ + + +F+ +D +LIEINP G+ LD K+ D NA FRQ L ++
Sbjct: 174 VQQFT-KIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLREM 232
Query: 272 RDWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGG 331
RD SQED +E +AA+ LNY+ALDG+IGC+VNGAGLAM TMDI+KLHGGEPANFLDVGGG
Sbjct: 233 RDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGG 292
Query: 332 ATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGT 391
AT +V EAFKII +D KV A++VNIFGGI+RCD+IA+GII A E+ + +P++ RL+G
Sbjct: 293 ATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGN 352
Query: 392 NVDDAKVLIASAAMKILPCDNLDEAARLAV 421
N + +A + + I+ L +AA+ V
Sbjct: 353 NAELGAKKLADSGLNIIAAKGLTDAAQQVV 382
>pdb|1JLL|B Chain B, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
pdb|1JLL|E Chain E, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
Length = 388
Score = 272 bits (696), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 161/390 (41%), Positives = 230/390 (58%), Gaps = 10/390 (2%)
Query: 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAXXXXXXXXX 93
+N+HE+ + L G+P P T +EA E A K+ V+K QV A
Sbjct: 1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGV 60
Query: 94 XXXXXXXXMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFM 153
+V++ E+ A +G L+T QT G+ N ++V KE Y +
Sbjct: 61 K-------VVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAV 113
Query: 154 MERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQALKVADAVGLKAK- 212
++RS V +AS++GGV IE+VA E P I +D G Q ++A +GL+ K
Sbjct: 114 VDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGKL 173
Query: 213 -RDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDL 271
+ T ++ + + +F+ +D +LI INP G+ LD K+ D NA FRQ L ++
Sbjct: 174 VQQFT-KIFMGLATIFLERDLALIAINPLVITKQGDLICLDGKLGADGNALFRQPDLREM 232
Query: 272 RDWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGG 331
RD SQED +E +AA+ LNY+ALDG+IGC+VNGAGLAM TMDI+KLHGGEPANFLDVGGG
Sbjct: 233 RDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGG 292
Query: 332 ATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGT 391
AT +V EAFKII +D KV A++VNIFGGI+RCD+IA+GII A E+ + +P++ RL+G
Sbjct: 293 ATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGN 352
Query: 392 NVDDAKVLIASAAMKILPCDNLDEAARLAV 421
N + +A + + I+ L +AA+ V
Sbjct: 353 NAELGAKKLADSGLNIIAAKGLTDAAQQVV 382
>pdb|3UFX|B Chain B, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|E Chain E, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|G Chain G, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|I Chain I, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
Length = 397
Score = 239 bits (609), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 148/392 (37%), Positives = 216/392 (55%), Gaps = 17/392 (4%)
Query: 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAXXXXXXXXX 93
+N+HE+ + +L G+PVPP VA T +EA IA++ K +V+KAQV
Sbjct: 1 MNLHEYQAKEILARYGVPVPPGKVAYTPEEAKRIAEEFG-KRVVIKAQV-------HVGG 52
Query: 94 XXXXXXXXMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFM 153
+ DTP+EA E A ++G + KG V+V E KEYY +
Sbjct: 53 RGKAGGVKLADTPQEAYEKAQAILGMNI-------KGLTVKKVLVAEAVDIAKEYYAGLI 105
Query: 154 MERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQALKVADAVGLKAKR 213
++R+ VL+ S +GGV+IEEVAAE P AI +D G +A ++ GL+
Sbjct: 106 LDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDPHKGFRPFEAREMVKRAGLEGNL 165
Query: 214 DITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDLRD 273
+ A++L+ +Y + DAS+ EINP G DAK+ DDNA FR L +LR+
Sbjct: 166 NKLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALFRHPDLAELRE 225
Query: 274 WSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGAT 333
E EVEA+ + Y+ LDG+IG + NGAGL M T+D++ GG+PANFLD+GGGA
Sbjct: 226 VEAEHPLEVEASNYGFAYVKLDGNIGIIGNGAGLVMYTLDLVNRVGGKPANFLDIGGGAK 285
Query: 334 AAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNV 393
A V A K++ DP V + +NIFGGI R D +A+G+I A +E L P++ R+ GT
Sbjct: 286 ADVVYNALKVVLKDPDVKGVFINIFGGITRADEVAKGVIRALEEGLLTKPVVMRVAGTAE 345
Query: 394 DDAKVLIASAAMKILPCDNLDEAARLAVKLSS 425
++AK L+ + + P EAA++ V +
Sbjct: 346 EEAKKLLEGKPVYMYPTSI--EAAKVTVAMKG 375
>pdb|1U6Z|A Chain A, Structure Of An E. Coli Exopolyphosphatase: Insight Into
The Processive Hydrolysis Of Polyphosphate And Its
Regulation
pdb|1U6Z|B Chain B, Structure Of An E. Coli Exopolyphosphatase: Insight Into
The Processive Hydrolysis Of Polyphosphate And Its
Regulation
Length = 513
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 326 LDVGGGATAAQVKEAFKIITADPKV--CAIMVNIF--GGIMRCDVIAEGIIAAAQELSLK 381
+D+GGG+T + E F+ I + + C ++ GG++ + +AAAQ+L
Sbjct: 142 IDIGGGSTELVIGENFEPILVESRRMGCVSFAQLYFPGGVINKENFQRARMAAAQKLE-T 200
Query: 382 IPIICRLQGTNV 393
+ R+QG NV
Sbjct: 201 LTWQFRIQGWNV 212
>pdb|2FLO|A Chain A, Crystal Structure Of Exopolyphosphatase (Ppx) From E. Coli
O157:h7
pdb|2FLO|B Chain B, Crystal Structure Of Exopolyphosphatase (Ppx) From E. Coli
O157:h7
pdb|2FLO|C Chain C, Crystal Structure Of Exopolyphosphatase (Ppx) From E. Coli
O157:h7
pdb|2FLO|D Chain D, Crystal Structure Of Exopolyphosphatase (Ppx) From E. Coli
O157:h7
Length = 524
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 326 LDVGGGATAAQVKEAFKIITADPKV--CAIMVNIF--GGIMRCDVIAEGIIAAAQELSLK 381
+D+GGG+T + E F+ I + + C ++ GG++ + AAAQ+L
Sbjct: 153 IDIGGGSTELVIGENFEPILVESRRXGCVSFAQLYFPGGVINKENFQRARXAAAQKLE-T 211
Query: 382 IPIICRLQGTNVDDAKVLIASAAMKIL 408
+ R+QG NV AA ++L
Sbjct: 212 LTWQFRIQGWNVAXGASGTIKAAHEVL 238
>pdb|2H92|A Chain A, Crystal Structure Of Staphylococcus Aureus Cytidine
Monophosphate Kinase In Complex With Cytidine-5'-
Monophosphate
pdb|2H92|B Chain B, Crystal Structure Of Staphylococcus Aureus Cytidine
Monophosphate Kinase In Complex With Cytidine-5'-
Monophosphate
pdb|2H92|C Chain C, Crystal Structure Of Staphylococcus Aureus Cytidine
Monophosphate Kinase In Complex With Cytidine-5'-
Monophosphate
Length = 219
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 32 RNLNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDI 76
RN +V +HVSY KE PV F V K K+ A E ++ +DI
Sbjct: 87 RNNDVTQHVSYVASKE---PVRSFAVKKQKELAAEKGIVMDGRDI 128
>pdb|2W4B|A Chain A, Epstein-Barr Virus Alkaline Nuclease D203s Mutant
pdb|2W4B|B Chain B, Epstein-Barr Virus Alkaline Nuclease D203s Mutant
Length = 470
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 115 KMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIE 174
K++GDY+ G+ GR C+ PR AF +RS P + G +
Sbjct: 363 KIVGDYVRHSGGGKPGRDCS---------PRVNIVTAFFRKRSPLDPA--TCTLGSDLLL 411
Query: 175 EVAAENPSAILYEPV 189
+ + E P A+L PV
Sbjct: 412 DASVEIPVAVLVTPV 426
>pdb|2W45|A Chain A, Epstein-Barr Virus Alkaline Nuclease
pdb|2W45|B Chain B, Epstein-Barr Virus Alkaline Nuclease
Length = 470
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 115 KMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIE 174
K++GDY+ G+ GR C+ PR AF +RS P + G +
Sbjct: 363 KIVGDYVRHSGGGKPGRDCS---------PRVNIVTAFFRKRSPLDPA--TCTLGSDLLL 411
Query: 175 EVAAENPSAILYEPV 189
+ + E P A+L PV
Sbjct: 412 DASVEIPVAVLVTPV 426
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,404,700
Number of Sequences: 62578
Number of extensions: 440329
Number of successful extensions: 1254
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1229
Number of HSP's gapped (non-prelim): 21
length of query: 443
length of database: 14,973,337
effective HSP length: 102
effective length of query: 341
effective length of database: 8,590,381
effective search space: 2929319921
effective search space used: 2929319921
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)