Query psy12143
Match_columns 443
No_of_seqs 251 out of 2178
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 19:51:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12143.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12143hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00124 succinyl-CoA ligase [ 100.0 1.7E-78 3.7E-83 622.1 45.2 394 30-425 24-421 (422)
2 COG0045 SucC Succinyl-CoA synt 100.0 2.7E-77 5.8E-82 590.6 43.4 382 34-425 1-385 (387)
3 PRK14046 malate--CoA ligase su 100.0 1.1E-73 2.4E-78 585.7 46.5 383 34-424 1-385 (392)
4 TIGR01016 sucCoAbeta succinyl- 100.0 5.6E-72 1.2E-76 574.8 45.7 381 34-424 1-385 (386)
5 PRK00696 sucC succinyl-CoA syn 100.0 3.6E-71 7.7E-76 569.2 46.4 380 34-424 1-385 (388)
6 PLN02235 ATP citrate (pro-S)-l 100.0 5.6E-67 1.2E-71 530.3 41.4 372 34-423 4-418 (423)
7 KOG1447|consensus 100.0 7.4E-63 1.6E-67 462.6 30.3 403 18-420 2-407 (412)
8 KOG2799|consensus 100.0 2.7E-60 5.9E-65 460.2 18.2 419 25-443 14-434 (434)
9 PF13549 ATP-grasp_5: ATP-gras 100.0 2.6E-40 5.6E-45 314.0 19.7 204 31-257 5-222 (222)
10 PF08442 ATP-grasp_2: ATP-gras 100.0 3.2E-40 6.9E-45 308.9 19.9 201 35-242 1-202 (202)
11 COG1042 Acyl-CoA synthetase (N 99.9 4.5E-23 9.8E-28 220.0 4.8 360 34-427 22-451 (598)
12 TIGR02717 AcCoA-syn-alpha acet 99.8 5.3E-20 1.2E-24 192.7 16.1 158 260-425 263-445 (447)
13 PF00549 Ligase_CoA: CoA-ligas 99.5 6.8E-14 1.5E-18 125.4 11.1 118 301-420 1-150 (153)
14 PF01071 GARS_A: Phosphoribosy 99.5 3E-13 6.6E-18 125.6 12.9 108 37-164 2-110 (194)
15 PF02786 CPSase_L_D2: Carbamoy 99.5 6.5E-13 1.4E-17 125.9 12.5 169 37-242 1-181 (211)
16 PRK06019 phosphoribosylaminoim 99.3 2E-11 4.4E-16 125.3 15.6 164 34-246 97-271 (372)
17 PRK12815 carB carbamoyl phosph 99.3 1.7E-11 3.7E-16 141.0 15.9 168 35-242 126-304 (1068)
18 PRK08654 pyruvate carboxylase 99.3 2E-11 4.4E-16 129.8 15.1 171 35-242 113-293 (499)
19 TIGR01161 purK phosphoribosyla 99.3 2.7E-11 5.9E-16 123.3 14.9 162 34-243 95-267 (352)
20 COG0151 PurD Phosphoribosylami 99.3 1.1E-11 2.5E-16 125.5 11.6 111 34-164 100-210 (428)
21 PLN02257 phosphoribosylamine-- 99.3 2.8E-11 6.1E-16 126.6 14.7 110 34-163 99-208 (434)
22 TIGR00514 accC acetyl-CoA carb 99.3 3.9E-11 8.4E-16 126.2 15.4 170 35-242 113-294 (449)
23 COG1042 Acyl-CoA synthetase (N 99.3 1.6E-12 3.5E-17 139.4 5.0 127 32-191 467-593 (598)
24 PRK09288 purT phosphoribosylgl 99.3 6.6E-11 1.4E-15 122.1 15.3 102 35-157 111-213 (395)
25 PRK12833 acetyl-CoA carboxylas 99.3 8E-11 1.7E-15 124.5 15.9 168 36-242 117-297 (467)
26 PRK08591 acetyl-CoA carboxylas 99.3 7.2E-11 1.6E-15 124.1 15.1 169 36-242 114-294 (451)
27 PLN02948 phosphoribosylaminoim 99.3 7.5E-11 1.6E-15 127.3 15.1 163 34-242 118-291 (577)
28 PF02222 ATP-grasp: ATP-grasp 99.3 8.5E-11 1.8E-15 107.9 13.2 117 45-198 1-117 (172)
29 PRK05586 biotin carboxylase; V 99.3 1E-10 2.2E-15 122.9 15.6 169 35-241 113-293 (447)
30 PLN02735 carbamoyl-phosphate s 99.2 7.1E-11 1.5E-15 135.8 15.1 165 35-242 142-322 (1102)
31 TIGR01369 CPSaseII_lrg carbamo 99.2 7.5E-11 1.6E-15 135.6 14.7 164 36-242 126-303 (1050)
32 PRK07178 pyruvate carboxylase 99.2 1.4E-10 3E-15 122.8 15.0 170 35-242 112-293 (472)
33 PLN02735 carbamoyl-phosphate s 99.2 1.5E-10 3.2E-15 133.2 15.5 169 34-242 699-877 (1102)
34 TIGR01142 purT phosphoribosylg 99.2 2.3E-10 5E-15 117.4 15.4 102 35-157 98-200 (380)
35 COG0458 CarB Carbamoylphosphat 99.2 2.2E-10 4.8E-15 115.9 13.6 167 36-243 115-292 (400)
36 TIGR00877 purD phosphoribosyla 99.2 7.9E-10 1.7E-14 115.3 17.8 102 35-157 102-204 (423)
37 PRK05294 carB carbamoyl phosph 99.2 2.6E-10 5.7E-15 131.4 15.0 164 36-242 127-305 (1066)
38 PRK13789 phosphoribosylamine-- 99.2 2.4E-10 5.3E-15 119.4 13.3 104 34-157 105-208 (426)
39 COG0439 AccC Biotin carboxylas 99.2 3.3E-10 7E-15 117.9 13.3 108 37-165 115-224 (449)
40 PRK08462 biotin carboxylase; V 99.1 7.6E-10 1.7E-14 116.2 15.9 111 35-166 115-227 (445)
41 TIGR02712 urea_carbox urea car 99.1 5.7E-10 1.2E-14 129.1 15.1 111 35-166 112-223 (1201)
42 PRK01372 ddl D-alanine--D-alan 99.1 4.5E-09 9.8E-14 104.6 19.1 98 34-157 95-192 (304)
43 PRK14569 D-alanyl-alanine synt 99.1 6.5E-10 1.4E-14 110.7 12.8 94 34-157 95-188 (296)
44 PRK06111 acetyl-CoA carboxylas 99.1 1.2E-09 2.6E-14 114.7 15.0 111 34-165 112-224 (450)
45 PRK13790 phosphoribosylamine-- 99.1 7.9E-10 1.7E-14 113.9 13.2 100 34-157 64-163 (379)
46 PRK08463 acetyl-CoA carboxylas 99.1 1.8E-09 3.8E-14 114.6 15.6 170 35-242 112-294 (478)
47 PRK14572 D-alanyl-alanine synt 99.1 1.7E-09 3.8E-14 110.0 15.0 96 34-155 127-228 (347)
48 PRK00885 phosphoribosylamine-- 99.1 1.1E-09 2.3E-14 114.3 13.4 103 35-157 100-202 (420)
49 TIGR01369 CPSaseII_lrg carbamo 99.1 1.8E-09 4E-14 124.3 15.1 98 36-156 668-765 (1050)
50 COG0026 PurK Phosphoribosylami 99.0 6.9E-09 1.5E-13 104.1 15.8 125 37-197 99-223 (375)
51 PRK05294 carB carbamoyl phosph 99.0 2.5E-09 5.4E-14 123.5 14.3 99 36-157 668-766 (1066)
52 PRK10446 ribosomal protein S6 99.0 4.9E-09 1.1E-13 104.5 14.5 98 34-156 96-196 (300)
53 PRK06524 biotin carboxylase-li 99.0 1E-08 2.3E-13 107.5 17.0 97 34-157 139-239 (493)
54 PRK12999 pyruvate carboxylase; 99.0 4.2E-09 9.2E-14 121.4 15.2 169 36-242 118-298 (1146)
55 TIGR01205 D_ala_D_alaTIGR D-al 99.0 4.7E-09 1E-13 105.0 13.6 97 35-157 103-205 (315)
56 TIGR01235 pyruv_carbox pyruvat 99.0 5.3E-09 1.1E-13 120.2 15.3 109 35-164 113-223 (1143)
57 PRK02186 argininosuccinate lya 99.0 5.4E-09 1.2E-13 118.7 15.2 97 35-156 105-201 (887)
58 PRK12815 carB carbamoyl phosph 99.0 5.8E-09 1.3E-13 120.3 14.9 96 36-157 669-764 (1068)
59 KOG0237|consensus 98.9 3.4E-09 7.5E-14 110.2 10.4 116 30-164 101-216 (788)
60 PRK07206 hypothetical protein; 98.9 2.1E-08 4.6E-13 104.2 16.1 102 36-155 107-210 (416)
61 PF07478 Dala_Dala_lig_C: D-al 98.9 5.6E-09 1.2E-13 98.5 10.2 88 44-157 1-92 (203)
62 COG4770 Acetyl/propionyl-CoA c 98.9 2.1E-08 4.5E-13 104.5 14.3 139 37-203 115-255 (645)
63 PRK12767 carbamoyl phosphate s 98.9 9.6E-09 2.1E-13 103.1 11.4 92 36-157 110-203 (326)
64 PF13535 ATP-grasp_4: ATP-gras 98.9 3.3E-08 7.1E-13 90.2 12.7 98 36-155 3-100 (184)
65 PF08443 RimK: RimK-like ATP-g 98.9 5.5E-09 1.2E-13 97.4 7.5 96 37-157 3-101 (190)
66 PRK14571 D-alanyl-alanine synt 98.8 3.8E-08 8.2E-13 98.0 13.7 91 35-156 93-183 (299)
67 KOG0369|consensus 98.8 4.6E-08 9.9E-13 103.1 14.2 277 37-378 147-446 (1176)
68 PRK01966 ddl D-alanyl-alanine 98.8 1.6E-08 3.6E-13 102.3 10.8 95 35-155 121-219 (333)
69 PRK14016 cyanophycin synthetas 98.8 2.6E-08 5.7E-13 110.6 12.3 95 35-155 212-307 (727)
70 PRK14570 D-alanyl-alanine synt 98.8 4.1E-08 8.9E-13 100.6 12.0 95 36-156 128-229 (364)
71 COG1038 PycA Pyruvate carboxyl 98.8 8.6E-08 1.9E-12 103.0 14.5 168 37-242 121-300 (1149)
72 TIGR02068 cya_phycin_syn cyano 98.8 3.6E-08 7.9E-13 111.4 12.3 94 36-155 212-306 (864)
73 PRK14568 vanB D-alanine--D-lac 98.8 3.7E-08 8E-13 100.2 10.5 93 36-156 131-223 (343)
74 PRK05784 phosphoribosylamine-- 98.7 9.4E-08 2E-12 101.4 13.0 104 34-157 106-219 (486)
75 PRK14573 bifunctional D-alanyl 98.7 1.1E-07 2.3E-12 107.2 13.6 97 36-157 567-670 (809)
76 TIGR01435 glu_cys_lig_rel glut 98.7 9.3E-08 2E-12 105.1 12.4 95 36-156 474-572 (737)
77 PRK06395 phosphoribosylamine-- 98.7 1E-07 2.2E-12 100.1 11.8 98 34-157 102-204 (435)
78 KOG0238|consensus 98.7 1.3E-07 2.8E-12 97.3 11.1 109 37-166 111-221 (670)
79 PRK02471 bifunctional glutamat 98.6 2.2E-07 4.8E-12 103.2 11.9 92 36-153 487-582 (752)
80 COG0027 PurT Formate-dependent 98.6 3.7E-07 8E-12 89.3 10.2 91 45-156 122-212 (394)
81 TIGR02144 LysX_arch Lysine bio 98.5 7.6E-07 1.6E-11 87.4 12.3 101 34-155 84-185 (280)
82 TIGR00768 rimK_fam alpha-L-glu 98.5 1.4E-06 3E-11 85.0 12.6 98 34-153 85-184 (277)
83 TIGR03103 trio_acet_GNAT GNAT- 98.5 8.9E-07 1.9E-11 95.5 12.1 93 36-155 296-389 (547)
84 PRK06849 hypothetical protein; 98.5 5.1E-07 1.1E-11 93.2 9.7 93 34-155 113-207 (389)
85 COG0189 RimK Glutathione synth 98.4 2.1E-06 4.7E-11 86.3 11.6 97 35-155 117-215 (318)
86 PRK13278 purP 5-formaminoimida 98.3 6.2E-06 1.4E-10 84.2 13.0 100 36-166 122-221 (358)
87 PF15632 ATPgrasp_Ter: ATP-gra 98.3 4.2E-06 9.1E-11 84.3 10.3 164 33-242 103-282 (329)
88 PF13607 Succ_CoA_lig: Succiny 98.2 2E-05 4.4E-10 69.8 12.0 117 296-420 2-135 (138)
89 KOG0370|consensus 98.1 2.1E-06 4.4E-11 93.8 2.9 160 43-242 504-672 (1435)
90 PLN02522 ATP citrate (pro-S)-l 98.0 8E-05 1.7E-09 80.5 13.5 129 295-429 167-320 (608)
91 PTZ00187 succinyl-CoA syntheta 98.0 0.00014 3E-09 72.9 14.1 123 295-423 169-312 (317)
92 COG1181 DdlA D-alanine-D-alani 97.9 0.00012 2.7E-09 73.6 12.0 97 35-157 101-201 (317)
93 KOG1254|consensus 97.8 5.3E-06 1.2E-10 85.3 0.6 285 75-377 81-435 (600)
94 PRK05678 succinyl-CoA syntheta 97.8 0.00042 9.1E-09 68.9 13.8 123 295-424 145-288 (291)
95 TIGR01019 sucCoAalpha succinyl 97.8 0.00039 8.5E-09 69.0 13.3 121 295-422 143-284 (286)
96 PF02655 ATP-grasp_3: ATP-gras 97.8 1.5E-05 3.3E-10 72.3 2.7 82 37-157 3-84 (161)
97 PLN00125 Succinyl-CoA ligase [ 97.7 0.00069 1.5E-08 67.6 13.7 124 295-425 150-295 (300)
98 COG0074 SucD Succinyl-CoA synt 97.7 0.00053 1.2E-08 66.9 12.3 124 294-423 144-288 (293)
99 TIGR02717 AcCoA-syn-alpha acet 97.6 0.00079 1.7E-08 71.1 13.6 122 295-424 150-288 (447)
100 PRK06091 membrane protein FdrA 97.6 0.00057 1.2E-08 72.8 12.4 121 295-426 193-318 (555)
101 PRK13277 5-formaminoimidazole- 97.6 0.00046 1E-08 70.1 10.7 100 40-166 129-228 (366)
102 KOG0368|consensus 97.4 0.0016 3.5E-08 74.7 12.2 84 58-166 225-309 (2196)
103 PLN02941 inositol-tetrakisphos 97.3 0.0018 4E-08 65.4 10.3 92 36-156 106-208 (328)
104 KOG0370|consensus 96.8 0.0028 6.1E-08 70.1 7.2 124 42-198 1038-1163(1435)
105 TIGR02291 rimK_rel_E_lig alpha 96.5 0.017 3.7E-07 58.1 10.2 53 35-87 35-89 (317)
106 TIGR01380 glut_syn glutathione 96.5 0.026 5.6E-07 56.8 11.5 84 47-155 129-215 (312)
107 COG3919 Predicted ATP-grasp en 96.5 0.009 1.9E-07 58.7 7.6 103 41-165 118-222 (415)
108 PRK12458 glutathione synthetas 96.2 0.024 5.3E-07 57.7 9.7 90 36-153 128-221 (338)
109 COG1759 5-formaminoimidazole-4 95.7 0.075 1.6E-06 52.9 9.8 89 41-157 128-216 (361)
110 PRK05246 glutathione synthetas 95.2 0.16 3.4E-06 51.1 10.7 79 51-154 134-215 (316)
111 KOG1255|consensus 95.2 0.21 4.5E-06 47.9 10.5 123 294-420 175-319 (329)
112 PF14397 ATPgrasp_ST: Sugar-tr 92.6 0.49 1.1E-05 47.0 8.2 53 34-87 23-87 (285)
113 COG2232 Predicted ATP-dependen 92.1 0.57 1.2E-05 47.0 7.8 91 134-243 176-276 (389)
114 PF02955 GSH-S_ATP: Prokaryoti 91.3 0.68 1.5E-05 42.7 6.9 67 52-143 12-79 (173)
115 PF02601 Exonuc_VII_L: Exonucl 90.5 4.3 9.4E-05 40.7 12.7 116 295-421 14-142 (319)
116 COG0054 RibH Riboflavin syntha 88.7 16 0.00035 32.9 13.2 107 311-427 34-150 (152)
117 PRK12419 riboflavin synthase s 87.3 22 0.00049 32.2 14.0 114 307-427 28-151 (158)
118 PRK10949 protease 4; Provision 85.4 1.9 4.2E-05 47.5 6.8 78 295-390 325-405 (618)
119 TIGR00237 xseA exodeoxyribonuc 84.3 17 0.00036 38.4 12.9 117 295-420 129-253 (432)
120 COG0616 SppA Periplasmic serin 82.5 4.6 0.0001 40.8 7.6 55 331-389 79-136 (317)
121 cd07014 S49_SppA Signal peptid 81.7 6.4 0.00014 35.9 7.7 62 327-391 17-81 (177)
122 TIGR00705 SppA_67K signal pept 78.3 4.9 0.00011 44.1 6.7 78 295-390 307-387 (584)
123 cd07018 S49_SppA_67K_type Sign 77.8 6.9 0.00015 37.2 6.8 56 331-389 28-86 (222)
124 cd00578 L-fuc_L-ara-isomerases 77.7 69 0.0015 33.8 15.0 87 333-427 48-152 (452)
125 PF10281 Ish1: Putative stress 76.6 6.3 0.00014 26.7 4.4 33 36-70 4-36 (38)
126 TIGR00706 SppA_dom signal pept 76.0 12 0.00027 35.1 7.9 58 332-390 13-70 (207)
127 PLN02775 Probable dihydrodipic 75.9 59 0.0013 32.4 12.8 125 297-429 13-152 (286)
128 cd07019 S49_SppA_1 Signal pept 74.5 9.5 0.00021 36.0 6.7 58 331-391 20-80 (211)
129 PRK04147 N-acetylneuraminate l 74.5 47 0.001 32.9 12.0 83 322-405 11-100 (293)
130 cd00408 DHDPS-like Dihydrodipi 74.1 61 0.0013 31.6 12.6 102 323-425 6-120 (281)
131 cd07022 S49_Sppa_36K_type Sign 73.2 18 0.00039 34.2 8.3 60 330-390 23-82 (214)
132 PF00885 DMRL_synthase: 6,7-di 73.0 26 0.00057 31.2 8.7 112 307-427 21-141 (144)
133 PF14403 CP_ATPgrasp_2: Circul 71.1 12 0.00026 39.6 7.0 84 36-150 298-391 (445)
134 PLN02417 dihydrodipicolinate s 70.7 83 0.0018 31.0 12.7 103 322-425 9-124 (280)
135 PRK00286 xseA exodeoxyribonucl 70.4 40 0.00087 35.4 11.0 116 295-420 135-258 (438)
136 PLN02404 6,7-dimethyl-8-ribity 70.2 79 0.0017 28.1 12.4 97 297-398 9-121 (141)
137 COG0329 DapA Dihydrodipicolina 70.0 70 0.0015 32.0 12.0 102 323-425 13-127 (299)
138 TIGR00730 conserved hypothetic 69.8 88 0.0019 28.8 11.8 120 296-421 31-176 (178)
139 PRK06091 membrane protein FdrA 69.0 30 0.00064 37.7 9.5 100 324-425 374-494 (555)
140 PRK00061 ribH 6,7-dimethyl-8-r 68.9 89 0.0019 28.2 14.1 124 296-427 13-150 (154)
141 PF11379 DUF3182: Protein of u 68.9 22 0.00047 36.1 7.9 91 42-154 104-196 (355)
142 cd07023 S49_Sppa_N_C Signal pe 68.7 17 0.00038 34.0 7.1 57 331-390 16-75 (208)
143 cd00394 Clp_protease_like Case 67.8 19 0.00041 32.0 6.8 54 333-391 12-67 (161)
144 PRK03170 dihydrodipicolinate s 67.5 1E+02 0.0022 30.4 12.5 102 323-425 10-124 (292)
145 TIGR02313 HpaI-NOT-DapA 2,4-di 66.1 1.1E+02 0.0024 30.3 12.6 102 323-425 9-123 (294)
146 TIGR00683 nanA N-acetylneurami 66.0 1.2E+02 0.0026 30.0 12.8 100 323-423 9-122 (290)
147 TIGR00674 dapA dihydrodipicoli 65.8 1.1E+02 0.0025 30.0 12.5 102 323-425 7-121 (285)
148 TIGR00114 lumazine-synth 6,7-d 64.6 1E+02 0.0022 27.3 13.3 109 308-425 19-136 (138)
149 COG0075 Serine-pyruvate aminot 64.1 36 0.00078 35.4 8.7 82 290-378 75-160 (383)
150 cd00952 CHBPH_aldolase Trans-o 62.9 1.5E+02 0.0032 29.7 12.8 74 329-404 23-103 (309)
151 PRK03620 5-dehydro-4-deoxygluc 59.6 1.7E+02 0.0037 29.1 12.6 102 322-425 15-129 (303)
152 cd02071 MM_CoA_mut_B12_BD meth 59.3 1.1E+02 0.0023 26.0 9.7 88 309-406 17-104 (122)
153 cd02067 B12-binding B12 bindin 59.1 1.1E+02 0.0023 25.6 10.1 100 309-420 17-117 (119)
154 PRK05849 hypothetical protein; 58.8 3.3E+02 0.0071 31.2 18.9 113 37-161 10-136 (783)
155 PRK02261 methylaspartate mutas 58.5 1.3E+02 0.0028 26.4 12.1 104 310-423 22-133 (137)
156 TIGR02130 dapB_plant dihydrodi 57.0 1.5E+02 0.0032 29.5 11.3 123 297-427 2-139 (275)
157 PF00701 DHDPS: Dihydrodipicol 57.0 1.7E+02 0.0037 28.7 12.0 102 323-425 10-124 (289)
158 cd00950 DHDPS Dihydrodipicolin 56.2 2E+02 0.0043 28.1 12.3 82 323-405 9-96 (284)
159 cd06270 PBP1_GalS_like Ligand 56.0 83 0.0018 29.6 9.4 81 296-383 117-204 (268)
160 cd00951 KDGDH 5-dehydro-4-deox 54.1 2.3E+02 0.005 28.0 12.7 101 323-425 9-122 (289)
161 COG0673 MviM Predicted dehydro 53.7 98 0.0021 30.7 9.9 99 297-407 5-121 (342)
162 COG0351 ThiD Hydroxymethylpyri 53.4 1.2E+02 0.0025 30.0 9.8 95 303-403 14-128 (263)
163 TIGR03249 KdgD 5-dehydro-4-deo 52.2 2.4E+02 0.0052 27.9 12.2 100 323-425 14-127 (296)
164 TIGR01101 V_ATP_synt_F vacuola 52.0 99 0.0021 26.5 8.0 60 323-390 34-93 (115)
165 PRK00048 dihydrodipicolinate r 51.3 1.4E+02 0.003 28.9 10.2 120 297-428 3-132 (257)
166 PF02750 Synapsin_C: Synapsin, 50.8 38 0.00082 31.9 5.7 79 48-154 29-107 (203)
167 PF05770 Ins134_P3_kin: Inosit 50.5 13 0.00029 37.3 2.9 81 47-156 110-194 (307)
168 TIGR00640 acid_CoA_mut_C methy 50.0 1.7E+02 0.0038 25.4 10.0 103 310-422 21-125 (132)
169 cd07020 Clp_protease_NfeD_1 No 49.8 68 0.0015 29.5 7.4 49 335-389 16-66 (187)
170 cd07021 Clp_protease_NfeD_like 49.8 73 0.0016 29.3 7.5 59 327-391 5-68 (178)
171 cd03412 CbiK_N Anaerobic cobal 47.2 1.2E+02 0.0025 26.2 8.0 53 352-404 2-69 (127)
172 TIGR02990 ectoine_eutA ectoine 46.2 86 0.0019 30.3 7.7 100 296-407 121-228 (239)
173 COG0821 gcpE 1-hydroxy-2-methy 45.9 58 0.0012 33.2 6.4 118 41-209 136-254 (361)
174 KOG1254|consensus 45.8 40 0.00086 36.0 5.5 93 295-391 159-252 (600)
175 PRK02228 V-type ATP synthase s 45.6 1.4E+02 0.003 24.7 7.9 52 334-391 29-80 (100)
176 PF00763 THF_DHG_CYH: Tetrahyd 45.5 39 0.00084 28.8 4.6 64 296-360 30-98 (117)
177 COG1619 LdcA Uncharacterized p 44.9 2E+02 0.0043 29.1 10.2 111 294-413 9-131 (313)
178 cd03557 L-arabinose_isomerase 44.5 3.2E+02 0.0069 29.4 12.3 123 298-427 3-161 (484)
179 PF14398 ATPgrasp_YheCD: YheC/ 43.9 3.2E+02 0.0068 26.6 19.6 106 34-157 15-142 (262)
180 TIGR00097 HMP-P_kinase phospho 43.1 1.2E+02 0.0025 29.2 8.2 77 303-386 9-99 (254)
181 PRK14191 bifunctional 5,10-met 41.8 64 0.0014 32.2 6.1 63 295-358 31-98 (285)
182 cd02072 Glm_B12_BD B12 binding 41.7 2.4E+02 0.0052 24.6 11.4 100 311-420 19-126 (128)
183 cd00954 NAL N-Acetylneuraminic 41.4 3.5E+02 0.0077 26.5 12.5 82 323-404 9-96 (288)
184 cd06288 PBP1_sucrose_transcrip 41.4 3E+02 0.0065 25.6 11.7 122 296-427 117-248 (269)
185 COG1879 RbsB ABC-type sugar tr 41.4 2.1E+02 0.0045 28.1 9.9 90 329-427 198-289 (322)
186 cd07062 Peptidase_S66_mccF_lik 41.2 1.6E+02 0.0034 29.5 9.0 61 297-357 2-74 (308)
187 cd06324 PBP1_ABC_sugar_binding 40.7 2.5E+02 0.0054 27.3 10.3 89 330-427 182-274 (305)
188 COG0151 PurD Phosphoribosylami 40.6 80 0.0017 33.2 6.7 82 339-429 53-144 (428)
189 PRK14175 bifunctional 5,10-met 40.1 72 0.0016 31.8 6.2 62 296-358 33-99 (286)
190 TIGR01506 ribC_arch riboflavin 39.7 2.9E+02 0.0062 24.9 15.0 111 308-427 15-130 (151)
191 PRK14184 bifunctional 5,10-met 39.6 73 0.0016 31.8 6.2 62 296-358 32-98 (286)
192 COG1570 XseA Exonuclease VII, 39.5 2.5E+02 0.0054 29.8 10.2 89 295-390 135-234 (440)
193 PRK15395 methyl-galactoside AB 39.3 2.7E+02 0.0058 27.7 10.4 100 312-423 185-290 (330)
194 PRK10792 bifunctional 5,10-met 39.1 79 0.0017 31.5 6.3 62 296-358 34-100 (285)
195 TIGR00705 SppA_67K signal pept 38.7 64 0.0014 35.5 6.1 54 332-388 76-133 (584)
196 PF00532 Peripla_BP_1: Peripla 38.6 1.3E+02 0.0028 29.4 7.8 65 311-383 141-208 (279)
197 PLN02419 methylmalonate-semial 38.5 3.7E+02 0.008 29.8 11.9 82 295-390 276-360 (604)
198 PRK14190 bifunctional 5,10-met 38.4 79 0.0017 31.5 6.2 62 296-358 33-99 (284)
199 PRK14189 bifunctional 5,10-met 38.2 81 0.0017 31.5 6.2 63 296-359 33-100 (285)
200 cd07113 ALDH_PADH_NahF Escheri 37.8 4.2E+02 0.009 28.1 12.1 69 306-389 183-252 (477)
201 PRK14176 bifunctional 5,10-met 37.6 78 0.0017 31.6 6.0 62 296-358 39-105 (287)
202 PRK14166 bifunctional 5,10-met 37.5 86 0.0019 31.2 6.3 62 296-358 31-97 (282)
203 TIGR02049 gshA_ferroox glutama 37.3 1.3E+02 0.0028 31.1 7.5 56 76-147 260-315 (403)
204 cd06311 PBP1_ABC_sugar_binding 37.1 2.7E+02 0.006 26.2 9.8 87 331-426 166-256 (274)
205 PRK12616 pyridoxal kinase; Rev 37.1 1.8E+02 0.0038 28.3 8.5 78 303-386 14-106 (270)
206 cd07013 S14_ClpP Caseinolytic 36.7 1E+02 0.0022 27.7 6.3 53 334-391 14-68 (162)
207 PRK14192 bifunctional 5,10-met 36.6 2.1E+02 0.0046 28.4 8.9 63 296-359 34-101 (283)
208 PRK14185 bifunctional 5,10-met 36.1 89 0.0019 31.3 6.2 63 295-358 31-98 (293)
209 PRK14187 bifunctional 5,10-met 36.1 90 0.002 31.3 6.2 62 296-358 33-99 (294)
210 PRK14180 bifunctional 5,10-met 36.0 90 0.002 31.1 6.1 63 295-358 31-98 (282)
211 PRK14168 bifunctional 5,10-met 35.9 88 0.0019 31.4 6.1 62 296-358 34-100 (297)
212 cd06306 PBP1_TorT-like TorT-li 35.9 3.1E+02 0.0067 25.9 9.9 87 332-427 166-254 (268)
213 PRK14170 bifunctional 5,10-met 35.9 90 0.0019 31.1 6.1 62 296-358 32-98 (284)
214 PF03641 Lysine_decarbox: Poss 35.7 83 0.0018 27.3 5.3 69 351-420 55-133 (133)
215 PLN02898 HMP-P kinase/thiamin- 35.6 1.5E+02 0.0032 31.8 8.3 85 297-386 11-110 (502)
216 PF01990 ATP-synt_F: ATP synth 35.6 1E+02 0.0022 25.0 5.5 50 333-390 26-77 (95)
217 PRK14174 bifunctional 5,10-met 35.5 91 0.002 31.3 6.1 62 296-358 32-98 (295)
218 PRK14169 bifunctional 5,10-met 35.5 1E+02 0.0022 30.7 6.4 62 296-358 31-97 (282)
219 PRK06455 riboflavin synthase; 35.4 3.4E+02 0.0074 24.6 10.0 79 307-389 16-99 (155)
220 cd01574 PBP1_LacI Ligand-bindi 35.3 2.6E+02 0.0056 26.0 9.2 76 296-380 117-198 (264)
221 COG1821 Predicted ATP-utilizin 35.3 63 0.0014 31.8 4.7 38 36-85 113-150 (307)
222 PRK14179 bifunctional 5,10-met 35.3 92 0.002 31.0 6.1 62 296-358 33-99 (284)
223 PRK14167 bifunctional 5,10-met 34.9 92 0.002 31.3 6.0 62 296-358 32-98 (297)
224 PRK10949 protease 4; Provision 34.8 80 0.0017 35.0 6.1 50 335-387 98-151 (618)
225 TIGR00514 accC acetyl-CoA carb 34.8 3.7E+02 0.0081 28.1 11.1 116 296-420 3-148 (449)
226 PF14305 ATPgrasp_TupA: TupA-l 34.5 2.5E+02 0.0054 27.0 8.9 94 34-143 17-119 (239)
227 PLN02897 tetrahydrofolate dehy 34.5 96 0.0021 31.8 6.1 45 314-359 110-154 (345)
228 PRK14193 bifunctional 5,10-met 34.2 99 0.0022 30.8 6.1 64 295-359 32-100 (284)
229 cd06302 PBP1_LsrB_Quorum_Sensi 34.2 3.4E+02 0.0074 26.2 10.1 100 313-420 147-248 (298)
230 PRK14183 bifunctional 5,10-met 34.2 97 0.0021 30.8 6.0 63 295-358 31-98 (281)
231 COG0190 FolD 5,10-methylene-te 33.9 1.1E+02 0.0024 30.4 6.3 45 314-359 54-98 (283)
232 PRK14171 bifunctional 5,10-met 33.8 99 0.0021 30.9 6.0 62 296-358 33-99 (288)
233 cd06300 PBP1_ABC_sugar_binding 33.8 4E+02 0.0086 24.9 10.3 89 329-427 164-255 (272)
234 PRK14178 bifunctional 5,10-met 33.7 1E+02 0.0022 30.7 6.1 63 295-358 26-93 (279)
235 cd07025 Peptidase_S66 LD-Carbo 33.5 1.4E+02 0.0031 29.4 7.2 61 298-358 1-71 (282)
236 PRK14194 bifunctional 5,10-met 33.5 98 0.0021 31.1 6.0 115 296-411 34-190 (301)
237 cd07015 Clp_protease_NfeD Nodu 33.3 1.8E+02 0.0039 26.6 7.3 57 327-389 5-66 (172)
238 cd07105 ALDH_SaliADH Salicylal 33.1 5.8E+02 0.013 26.6 13.0 84 295-390 125-213 (432)
239 TIGR01501 MthylAspMutase methy 32.7 3.4E+02 0.0074 23.8 10.3 100 312-422 22-130 (134)
240 PRK14181 bifunctional 5,10-met 32.6 1E+02 0.0022 30.7 5.9 63 295-358 26-93 (287)
241 cd06275 PBP1_PurR Ligand-bindi 32.5 2.3E+02 0.0051 26.4 8.4 81 296-383 118-205 (269)
242 PRK14182 bifunctional 5,10-met 32.4 1.1E+02 0.0025 30.4 6.2 63 295-358 30-97 (282)
243 PRK14177 bifunctional 5,10-met 32.3 1.1E+02 0.0024 30.5 6.0 62 296-358 34-100 (284)
244 COG2185 Sbm Methylmalonyl-CoA 32.1 3.6E+02 0.0078 24.1 8.7 85 311-406 32-117 (143)
245 cd06303 PBP1_LuxPQ_Quorum_Sens 32.0 4.5E+02 0.0097 24.9 11.5 86 330-423 170-256 (280)
246 PF06180 CbiK: Cobalt chelatas 31.6 1.5E+02 0.0033 29.1 6.9 65 351-421 1-68 (262)
247 KOG1251|consensus 31.2 2.7E+02 0.0058 27.5 8.2 17 102-118 5-21 (323)
248 PRK14172 bifunctional 5,10-met 31.1 1.1E+02 0.0025 30.3 6.0 62 296-358 33-99 (278)
249 PF03709 OKR_DC_1_N: Orn/Lys/A 30.6 1.3E+02 0.0029 25.3 5.6 51 337-390 26-76 (115)
250 PRK14173 bifunctional 5,10-met 30.1 1.3E+02 0.0029 29.9 6.3 64 295-359 29-97 (287)
251 PF00731 AIRC: AIR carboxylase 29.6 4.2E+02 0.009 23.8 10.3 123 297-433 2-137 (150)
252 PRK11778 putative inner membra 29.4 1.3E+02 0.0029 30.5 6.2 37 351-390 124-163 (330)
253 PLN02516 methylenetetrahydrofo 28.7 1.2E+02 0.0026 30.5 5.6 62 296-358 40-106 (299)
254 COG2242 CobL Precorrin-6B meth 28.6 3.8E+02 0.0083 25.0 8.6 112 277-405 17-153 (187)
255 COG0436 Aspartate/tyrosine/aro 28.5 2.5E+02 0.0055 29.1 8.3 77 297-378 90-195 (393)
256 cd07131 ALDH_AldH-CAJ73105 Unc 27.8 5.7E+02 0.012 27.0 11.1 70 307-390 177-247 (478)
257 PRK15408 autoinducer 2-binding 27.8 4.8E+02 0.01 26.2 10.1 85 330-423 189-274 (336)
258 cd07109 ALDH_AAS00426 Uncharac 27.5 6.1E+02 0.013 26.6 11.2 83 295-390 144-229 (454)
259 COG3473 Maleate cis-trans isom 27.2 4.2E+02 0.0091 25.4 8.5 66 327-405 159-224 (238)
260 cd07110 ALDH_F10_BADH Arabidop 27.1 6.1E+02 0.013 26.6 11.1 84 295-391 147-233 (456)
261 PLN02331 phosphoribosylglycina 26.7 1.8E+02 0.004 27.4 6.3 43 369-411 14-56 (207)
262 COG3845 ABC-type uncharacteriz 26.7 46 0.00099 35.6 2.4 52 1-60 89-140 (501)
263 cd01171 YXKO-related B.subtili 26.4 66 0.0014 30.8 3.4 84 295-386 8-109 (254)
264 PLN02467 betaine aldehyde dehy 26.1 8.4E+02 0.018 26.2 12.5 82 296-391 179-264 (503)
265 cd07103 ALDH_F5_SSADH_GabD Mit 25.6 7.8E+02 0.017 25.6 12.6 82 295-390 144-229 (451)
266 KOG3432|consensus 25.3 4.3E+02 0.0093 22.5 7.7 60 322-389 35-94 (121)
267 PRK09330 cell division protein 25.2 3.6E+02 0.0078 28.1 8.6 24 295-319 13-36 (384)
268 PRK14186 bifunctional 5,10-met 24.7 1.6E+02 0.0035 29.5 5.7 62 296-358 33-99 (297)
269 TIGR00519 asnASE_I L-asparagin 24.6 2.9E+02 0.0064 28.0 7.8 80 341-424 228-313 (336)
270 PRK12412 pyridoxal kinase; Rev 24.5 4.1E+02 0.0089 25.7 8.6 71 303-378 12-97 (268)
271 PRK14188 bifunctional 5,10-met 24.4 1.6E+02 0.0034 29.6 5.6 116 295-411 32-189 (296)
272 PRK10727 DNA-binding transcrip 24.3 2.6E+02 0.0057 27.6 7.4 81 296-383 177-264 (343)
273 COG1012 PutA NAD-dependent ald 23.9 4.9E+02 0.011 27.8 9.6 70 308-391 176-246 (472)
274 cd07085 ALDH_F6_MMSDH Methylma 23.9 8.8E+02 0.019 25.6 12.4 81 295-390 163-247 (478)
275 cd02940 DHPD_FMN Dihydropyrimi 23.5 6.1E+02 0.013 25.1 9.7 72 333-406 111-195 (299)
276 cd06287 PBP1_LacI_like_8 Ligan 23.1 3.7E+02 0.0081 25.6 8.0 64 312-383 141-205 (269)
277 PRK03659 glutathione-regulated 22.9 9E+02 0.02 26.6 11.8 96 299-407 403-514 (601)
278 TIGR02637 RhaS rhamnose ABC tr 22.8 6.4E+02 0.014 24.2 9.7 76 331-415 166-243 (302)
279 cd06286 PBP1_CcpB_like Ligand- 22.7 3.6E+02 0.0077 25.0 7.7 42 333-381 158-200 (260)
280 PF13407 Peripla_BP_4: Peripla 22.7 6.2E+02 0.013 23.4 9.3 86 331-426 164-252 (257)
281 PF03599 CdhD: CO dehydrogenas 22.6 4.7E+02 0.01 27.3 8.8 100 295-406 69-171 (386)
282 cd07089 ALDH_CddD-AldA-like Rh 22.6 8E+02 0.017 25.8 11.0 83 295-390 150-235 (459)
283 cd07093 ALDH_F8_HMSADH Human a 22.5 9E+02 0.019 25.2 12.2 84 295-391 144-230 (455)
284 PRK07475 hypothetical protein; 22.3 5.3E+02 0.011 24.8 8.8 25 295-321 122-146 (245)
285 PF07805 HipA_N: HipA-like N-t 22.2 66 0.0014 25.2 2.1 27 34-60 42-68 (81)
286 COG3193 GlcG Uncharacterized p 21.9 1.3E+02 0.0028 26.8 3.9 89 63-174 19-107 (141)
287 COG1509 KamA Lysine 2,3-aminom 21.7 6.7E+02 0.015 25.9 9.5 15 393-407 238-252 (369)
288 cd06319 PBP1_ABC_sugar_binding 21.7 6.6E+02 0.014 23.4 10.0 106 312-427 148-256 (277)
289 KOG4166|consensus 21.7 41 0.00088 35.4 0.9 53 304-356 520-577 (675)
290 cd07097 ALDH_KGSADH-YcbD Bacil 21.6 8.2E+02 0.018 25.8 10.8 82 295-390 162-247 (473)
291 cd07118 ALDH_SNDH Gluconobacte 21.5 9.5E+02 0.021 25.2 12.1 70 295-377 146-220 (454)
292 COG0206 FtsZ Cell division GTP 21.5 2E+02 0.0044 29.4 5.9 24 295-319 11-34 (338)
293 cd07088 ALDH_LactADH-AldA Esch 21.3 8.6E+02 0.019 25.5 10.9 70 307-390 175-245 (468)
294 cd07115 ALDH_HMSADH_HapE Pseud 21.2 7.8E+02 0.017 25.7 10.5 71 307-390 159-229 (453)
295 PRK00994 F420-dependent methyl 21.2 7E+02 0.015 24.4 8.9 71 331-407 42-112 (277)
296 PRK13789 phosphoribosylamine-- 21.2 4.6E+02 0.0099 27.5 8.7 113 297-419 6-138 (426)
297 TIGR01918 various_sel_PB selen 21.2 3.1E+02 0.0067 29.0 7.1 73 336-413 323-398 (431)
298 cd07100 ALDH_SSADH1_GabD1 Myco 21.1 8.7E+02 0.019 25.2 10.8 82 295-390 123-207 (429)
299 TIGR00036 dapB dihydrodipicoli 21.1 7.7E+02 0.017 23.9 10.2 123 297-429 3-143 (266)
300 cd07150 ALDH_VaniDH_like Pseud 21.1 8.9E+02 0.019 25.2 11.0 82 295-390 146-231 (451)
301 PF08543 Phos_pyr_kin: Phospho 21.0 3.7E+02 0.0079 25.7 7.4 76 303-386 2-91 (246)
302 cd06297 PBP1_LacI_like_12 Liga 21.0 3.6E+02 0.0078 25.4 7.4 62 313-381 143-205 (269)
303 PF04174 CP_ATPgrasp_1: A circ 20.8 1.8E+02 0.0039 29.6 5.3 67 39-119 254-323 (330)
304 cd06296 PBP1_CatR_like Ligand- 20.7 3.2E+02 0.0069 25.5 6.9 61 313-380 141-202 (270)
305 COG1609 PurR Transcriptional r 20.5 8.6E+02 0.019 24.3 11.2 80 296-383 176-264 (333)
306 COG0299 PurN Folate-dependent 20.1 2.4E+02 0.0053 26.6 5.5 49 357-409 7-55 (200)
307 PLN02616 tetrahydrofolate dehy 20.1 2.1E+02 0.0047 29.5 5.7 46 313-359 126-171 (364)
308 cd07119 ALDH_BADH-GbsA Bacillu 20.0 9.4E+02 0.02 25.4 10.9 82 295-390 161-246 (482)
No 1
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=100.00 E-value=1.7e-78 Score=622.14 Aligned_cols=394 Identities=53% Similarity=0.840 Sum_probs=371.9
Q ss_pred cccccCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHc---CCCeEEEEEeecCCCCCccccccCccCcEEEeCCH
Q psy12143 30 QKRNLNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKL---NIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTP 106 (443)
Q Consensus 30 ~~~~~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~l---g~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ 106 (443)
|.++|+|+||++|++|++||||+|++.++++++|+.++++++ ++ |+|+|+|++.|||||+|||||.+|||+++.+
T Consensus 24 ~~~~m~l~EyqaK~LL~~~GIpvp~~~va~t~eea~~aa~~l~~~~~-pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~- 101 (422)
T PLN00124 24 QLRRLNIHEYQGAELMSKYGVNVPKGAAASSLDEVKKALEKMFPDEG-EVVVKSQILAGGRGLGTFKNGLKGGVHIVKK- 101 (422)
T ss_pred cccccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhcccCC-cEEEEEEeccCCccccccccccCCeEEECCH-
Confidence 467799999999999999999999999999999999999999 56 9999999999999999999997799999977
Q ss_pred HHHHHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEE
Q psy12143 107 EEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILY 186 (443)
Q Consensus 107 ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~ 186 (443)
+|+.+++++|+++...++|+++.|..+++++|++++..++|+|+|+++||..+||++++++.||++||.+.+..||.+.+
T Consensus 102 eea~~aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpvil~s~~GGv~IEeva~~~pd~i~~ 181 (422)
T PLN00124 102 DKAEELAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLIIACSKGGTSIEDLAEKFPEKIIK 181 (422)
T ss_pred HHHHHHHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcEEEEECCCCccHHHhhhhCchheeE
Confidence 99999999999986555676666788899998888888999999999999667999977779999999999989999999
Q ss_pred EecCCCCCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHHHhhhhCCCeEEeeeceeEccCCCEEEEeEEEEecCcchhhh
Q psy12143 187 EPVDITVGITKEQALKVADAVGL-KAKRDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQ 265 (443)
Q Consensus 187 ~~l~p~~~l~~~~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~~~~~~lEINPl~v~~~g~~~alDa~i~l~~~a~~rq 265 (443)
++++|..++++.++++++..|++ +.+.+++++++.+||++|.+.+++++|||||+++++|+++|+|+++.+||||.|||
T Consensus 182 ~~id~~~~l~~~~a~~~~~~L~~~~~~~~~l~~ii~~L~~lf~~~d~~~lEINPL~vt~~G~~valDAKi~~DdnA~~R~ 261 (422)
T PLN00124 182 VPIDIFKGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCKCDCTMVEINPLAETADGQLVAADAKLNFDDNAAFRQ 261 (422)
T ss_pred EecCcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEeeceEEccCCCEEEEEEEECcCCchhhcC
Confidence 99999889999999999999998 88999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCccCCHHHHHHhcCCCeEeecCCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHH
Q psy12143 266 KALFDLRDWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIIT 345 (443)
Q Consensus 266 p~i~~~~~~~~~~~~e~~a~~~~l~~~~~~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll 345 (443)
+++..++++.+.++.|.++...+++|++++|+||+|+||+|++|.++|++..+|++|+||+|++|.++.+.+++++++++
T Consensus 262 ~~~~~~~~~~~~~~~E~~a~~~~l~yv~ldG~Ig~~vnGaGlamaTmD~i~~~Gg~pANFlD~GG~a~~~~v~~a~~ii~ 341 (422)
T PLN00124 262 KEIFALRDTSQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGSPANFLDVGGNASEQQVVEAFKILT 341 (422)
T ss_pred hhhhhccCcccCChhHHHHhhCCCceECCCCcEEEEecCchHHHHHHHHHHHcCCCcceeeecCCCCCHHHHHHHHHHHh
Confidence 99998888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHHH
Q psy12143 346 ADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 346 ~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~ 425 (443)
+||++++|||||+||+++||.+|++|++++++.+.++|||+|+.|++.++++++|++.|++++.|+++++|++...+++.
T Consensus 342 ~d~~vk~iliNIfGGI~~cd~iA~gii~a~~~~~~~~pivvRl~Gtn~~~g~~~l~~~~~~~~~~~~l~~A~~~~v~~~~ 421 (422)
T PLN00124 342 SDDKVKAILVNIFGGIMKCDVIASGIVNAAKQVGLKVPLVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVKALA 421 (422)
T ss_pred cCCCCcEEEEEecCCccchHHHHHHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHhCCCCeEEcCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999878899999999999999999999999887779999999999887754
No 2
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=2.7e-77 Score=590.61 Aligned_cols=382 Identities=52% Similarity=0.808 Sum_probs=365.4
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
|+|+||++|++|++||||+|++.++++++|+.++++++|..|+|+|+|++.|||||+ |||+++.|++|+.+++
T Consensus 1 M~lhEYqaKelf~~~GiPvp~g~v~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKa-------GGVk~~~s~~ea~~~a 73 (387)
T COG0045 1 MNLHEYQAKELFAKYGIPVPPGYVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGKA-------GGVKLAKSPEEAKEAA 73 (387)
T ss_pred CcHHHHHHHHHHHHcCCCCCCceeeeCHHHHHHHHHHhCCCcEEEEeeeeecCcccc-------CceEEeCCHHHHHHHH
Confidence 789999999999999999999999999999999999998559999999999999998 9999999999999999
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeC-CCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCC
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKY-PRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDIT 192 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~-~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~ 192 (443)
++|+++. +|+.+.|..++.+|||++++ ..+|+|+++..|+....|++|+|.+||++||.+.+++|+++.+.+++|.
T Consensus 74 ~~~lg~~---~q~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~~~S~eGGmDIEeVa~~~PekI~k~~idp~ 150 (387)
T COG0045 74 EEILGKN---YQTDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVLMASTEGGMDIEEVAEKTPEKIVKVSVDPL 150 (387)
T ss_pred HHHhCcc---cccCcCCceeeEEEEEecCCCccceEEEEEEEEcCCCcEEEEEecCCCccHHHhhhhChhheeEEEeCCc
Confidence 9999965 67778899999999999999 4559999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHHHhhhhCCCeEEeeeceeEccCC-CEEEEeEEEEecCcchhhhhhhhc
Q psy12143 193 VGITKEQALKVADAVGL-KAKRDITAEMLIKMYALFISKDASLIEINPYAEDATG-NFFGLDAKMRFDDNAEFRQKALFD 270 (443)
Q Consensus 193 ~~l~~~~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~~~~~~lEINPl~v~~~g-~~~alDa~i~l~~~a~~rqp~i~~ 270 (443)
.++.+.+||+++..+|+ +...+++++++.+||++|.++|.+++|||||+++++| +++|+|+++.+|+||.||||++..
T Consensus 151 ~g~~~~~aR~la~~lgl~~~~~~~~~~ii~~Ly~~f~~~Da~lvEINPLvvt~~~g~v~aLDaKi~~DdnAlfRHp~~~~ 230 (387)
T COG0045 151 TGLRPYQARELAFKLGLEGELVKQVADIIKKLYKLFVEKDATLVEINPLVVTPDGGDVLALDAKITLDDNALFRHPDLAE 230 (387)
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEeeccEEeCCCCcEEEEeeeeeccCcccccCcchhh
Confidence 99999999999999999 8889999999999999999999999999999999954 899999999999999999999999
Q ss_pred ccCCccCCHHHHHHhcCCCeEeecCCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCc
Q psy12143 271 LRDWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKV 350 (443)
Q Consensus 271 ~~~~~~~~~~e~~a~~~~l~~~~~~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~v 350 (443)
+++..++++.|..+.+++++|++++||||||.||+|+.|.|+|.+..+|++|+||+|++|+++.+.+.++++++++||++
T Consensus 231 ~~d~~~ed~~e~~a~~~~l~yV~LdG~IG~ivNGAGLaMaTmDii~~~Gg~PANFLDvGGgA~~e~v~~a~~~il~d~~v 310 (387)
T COG0045 231 LRDESEEDPREAEASGYGLNYVELDGNIGCIVNGAGLAMATMDIVKLYGGKPANFLDVGGGATAERVKEAFKLILSDPNV 310 (387)
T ss_pred hhcccccChhHHHhhhCCCceEEecCcEEEEecChhHHHHHHHHHHHcCCCCcceeecCCCCCHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHHH
Q psy12143 351 CAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 351 d~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~ 425 (443)
++||||+||+++.||.+|++|+++.++.+.++|+|+|+.|++.++++++|+++|+++..|+++++|++...++++
T Consensus 311 k~IfVNIfGGI~rcD~vA~GIi~Al~e~~~~vPlVVRL~GtN~e~Gk~iL~esg~~i~~~~~l~~aa~k~v~~~~ 385 (387)
T COG0045 311 KAIFVNIFGGITRCDEVAEGIIAALKEVGVNVPLVVRLEGTNVEEGKRILAESGLNIIAADDLDEAAEKAVELAK 385 (387)
T ss_pred cEEEEEEccCcCccHHHHHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHHHcCCceEecccHHHHHHHHHHHhh
Confidence 999999999999999999999999999877899999999999999999999999666669999999999777654
No 3
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=100.00 E-value=1.1e-73 Score=585.74 Aligned_cols=383 Identities=43% Similarity=0.694 Sum_probs=358.5
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
|+|+|+++|++|++||||+|++.+++|++|+.++++++||+|+|+|+|++.+||||. |||+++.|++|+.+++
T Consensus 1 m~l~E~eak~lL~~yGIpvp~~~~~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk~-------GGV~l~~~~~e~~~a~ 73 (392)
T PRK14046 1 MDIHEYQAKELLASFGVAVPRGALAYSPEQAVYRARELGGWHWVVKAQIHSGARGKA-------GGIKLCRTYNEVRDAA 73 (392)
T ss_pred CCCcHHHHHHHHHHcCCCCCCceEECCHHHHHHHHHHcCCCcEEEEeeeccCCCCcC-------CeEEEECCHHHHHHHH
Confidence 789999999999999999999999999999999999999855699999888889887 9999999999999999
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEee-cCCCCcchhcccccCCCeEEEEecCCC
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIA-SSQGGVNIEEVAAENPSAILYEPVDIT 192 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~-g~~GGv~vE~l~~~~~d~v~~~~l~p~ 192 (443)
++|+++.+.+++++|.|..+.+|+||+|+++++|+|+|+++||.| ||++++ |..||+++|.+..++||.+.+++++|.
T Consensus 74 ~~ll~~~~~~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~-g~~v~~~s~~GGv~iEe~~~~~p~~i~~~~i~~~ 152 (392)
T PRK14046 74 EDLLGKKLVTHQTGPEGKPVQRVYVETADPIERELYLGFVLDRKS-ERVRVIASARGGMEIEEIAAKEPEAIIQVVVEPA 152 (392)
T ss_pred HHHhcchhhhhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCC-CcEEEEEeCCCCCchHHHhhhChhheEEEEcCCC
Confidence 999998655577777788899999999999999999999999996 666655 469999999999889999999999999
Q ss_pred CCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHHHhhhhCCCeEEeeeceeEccCCCEEEEeEEEEecCcchhhhhhhhcc
Q psy12143 193 VGITKEQALKVADAVGL-KAKRDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDL 271 (443)
Q Consensus 193 ~~l~~~~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~~~~~~lEINPl~v~~~g~~~alDa~i~l~~~a~~rqp~i~~~ 271 (443)
.++++.++++++..+|+ +....++.+++.+||++|.+.|++++|||||+++.+|+++|+|+|+.+||||.||||++..+
T Consensus 153 ~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~l~~~f~~~d~~l~EINPl~~~~~g~~~alD~k~~~Ddna~~r~~~~~~~ 232 (392)
T PRK14046 153 VGLQQFQAREIAFGLGLDIKQVSRAVKTIMGCYRAFRDLDATMLEINPLVVTKDDRVLALDAKMSFDDNALFRRPNIAEM 232 (392)
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCcEEEEEEcceEcCCCcEEEEeeeECccCCchhcChhHHhh
Confidence 99999999999999999 88899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCHHHHHHhcCCCeEeecCCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCcc
Q psy12143 272 RDWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVC 351 (443)
Q Consensus 272 ~~~~~~~~~e~~a~~~~l~~~~~~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd 351 (443)
+++.+.++.|.++.+++++|++++|+||||+||+|++|+++|++..+|++++||+|++|.++++.|..+++++++||+||
T Consensus 233 ~~~~~~~~~e~~a~~~~l~yv~l~G~ig~i~nGaGl~m~t~D~i~~~gg~paNPlDlgg~a~~e~~~~aL~~ll~Dp~Vd 312 (392)
T PRK14046 233 RDPSQEDPREAQAAEHGLSYVGLDGDIGCIVNGAGLAMATMDMIKLAGGEPANFLDVGGGASPERVAKAFRLVLSDRNVK 312 (392)
T ss_pred cCcccCChhHHHHHHcCCceEccCCcEEEEeCCccHHHHHHHHHHhcCCCCcCCEEecCCCCHHHHHHHHHHHHcCCCCC
Confidence 99988899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHH
Q psy12143 352 AIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLS 424 (443)
Q Consensus 352 ~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~ 424 (443)
+||++++++++.|+.++++|+++.++.+.+||+++++.|++.++++++|+++|+|++.++++++|++...+++
T Consensus 313 aVlv~i~ggi~~~~~vA~~Ii~a~~~~~~~kPvvv~l~G~~~e~~~~iL~~~Gipvf~~~~~~~a~~~~v~~~ 385 (392)
T PRK14046 313 AILVNIFAGINRCDWVAEGVVQAAREVGIDVPLVVRLAGTNVEEGRKILAESGLPIITADTLAEAAEKAVEAW 385 (392)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHHcCCCeeecCCHHHHHHHHHHHH
Confidence 9999988778889999999999988754679998888887788899999999999988899999999888664
No 4
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=100.00 E-value=5.6e-72 Score=574.80 Aligned_cols=381 Identities=47% Similarity=0.771 Sum_probs=352.0
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcC-CCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLN-IKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEV 112 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg-~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a 112 (443)
|+|+|+++|++|++||||||++.++++.+|+.++++++| | |+|+|++.+.+|||+. |||.++.|++++.++
T Consensus 1 m~L~E~~aK~ll~~~GIpvp~~~~~~~~~ea~~~~~~ig~~-PvVvK~~~~~ggkg~~-------GGV~~~~~~~e~~~a 72 (386)
T TIGR01016 1 MNLHEYQAKQIFAKYGIPVPRGYVATSVEEAEEIAAKLGAG-PVVVKAQVHAGGRGKA-------GGVKVAKSKEEARAA 72 (386)
T ss_pred CCCcHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCC-cEEEEecccCCCCccC-------ceEEEeCCHHHHHHH
Confidence 789999999999999999999999999999999999999 8 9999999777788886 999999999999999
Q ss_pred HHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCC
Q psy12143 113 AGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDIT 192 (443)
Q Consensus 113 ~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~ 192 (443)
+++++++...+++..+.+..+++|+||+|+++++|+|+|+++|+..+||+++||..||+++|.+++.+|+.+.++.++|.
T Consensus 73 ~~~l~~~~~~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~~~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p~ 152 (386)
T TIGR01016 73 AEKLLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSARCPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPL 152 (386)
T ss_pred HHHHhccceeecccCCCCCEeeEEEEEECccCCceEEEEEEEcCCCCceEEEEECCCCccHHHHhhhCccceEEEEcCCC
Confidence 99998754332332224566789999999999999999999999856999999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHHHhhhhCCCeEEeeeceeEccCCCEEEEeEEEEecCcchhhhhhhhcc
Q psy12143 193 VGITKEQALKVADAVGL-KAKRDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDL 271 (443)
Q Consensus 193 ~~l~~~~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~~~~~~lEINPl~v~~~g~~~alDa~i~l~~~a~~rqp~i~~~ 271 (443)
.++...+++++...+++ +.+.+++++++.+||++|.+.+++++|||||+++++|+++|+|+|+.+|+||.|||+++..+
T Consensus 153 ~~~~~~~a~~~~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~lEINPl~v~~~g~~~a~Daki~~dd~a~~r~~~~~~~ 232 (386)
T TIGR01016 153 TGLLPYQAREIAKKLGLEGELVKQVADIIKKLYQIFLEYDASLVEINPLVITKDGNLIALDAKLTIDDNALFRHPDLEEM 232 (386)
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCceEEEeeeeEEcCCCCEEEEeeeEeeccchhhhcHHHHHh
Confidence 88999999999999999 88999999999999999999999999999999999988999999999999999999999988
Q ss_pred cCCccCCHHHHHHhcCCCeEeecCCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCcc
Q psy12143 272 RDWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVC 351 (443)
Q Consensus 272 ~~~~~~~~~e~~a~~~~l~~~~~~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd 351 (443)
++..+.++.|.++.+++++|++++||||||+||||++|+++|++..+|++++||+|++|.++++.|.++++++++||++|
T Consensus 233 ~~~~~~~~~e~~~~~~~l~~v~l~G~i~~i~nG~Gl~~~t~D~~~~~g~~~aNplDlgg~a~~~~~~~al~~l~~dp~vd 312 (386)
T TIGR01016 233 RDYSQEDPREVLAKQWGLNYVALDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGASAERVREALKLVLSDKSVK 312 (386)
T ss_pred hcCCcCChhhhHHHHcCCcEEccCCcEEEEECCccHHHHHHHHHHHcCCCCCCcEEecCCCCHHHHHHHHHHHHcCCCCC
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCC--CCcccCCCHHHHHHHHHHHH
Q psy12143 352 AIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAA--MKILPCDNLDEAARLAVKLS 424 (443)
Q Consensus 352 ~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~G--iP~~~f~s~e~Av~al~~l~ 424 (443)
+||+++++++++|+.++++|+++.++.+.+|||++++.|++.++++++|+++| +|+ |++|++|+++..+++
T Consensus 313 ~ilv~i~gg~~~~~~va~~i~~a~~~~~~~kPvvv~~~g~~~~~~~~~L~~~G~~ip~--~~~~~~Av~~~~~~~ 385 (386)
T TIGR01016 313 VVFINIFGGITRCDLVAKGLVEALKEVGVNVPVVVRLEGTNVEEGKKILAESGLNIIF--ATSMEEAAEKAVEAA 385 (386)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHHHHHcCCCccc--cCCHHHHHHHHHHhh
Confidence 99999888788899999999999988544599988888877888899999999 888 999999999988764
No 5
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=100.00 E-value=3.6e-71 Score=569.22 Aligned_cols=380 Identities=52% Similarity=0.788 Sum_probs=346.5
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHc-CCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKL-NIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEV 112 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~l-g~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a 112 (443)
|+|+|+++|++|++||||+|++.++++.+|+.++++++ || |||+|++.+.+||++. |||+++.|++++.++
T Consensus 1 m~l~e~~ak~lL~~~gIpvp~~~~~~~~~ea~~~a~~i~g~-PvVvK~~~~~ggk~~~-------GGV~l~~~~~e~~~a 72 (388)
T PRK00696 1 MNLHEYQAKELFAKYGVPVPRGIVATTPEEAVEAAEELGGG-VWVVKAQVHAGGRGKA-------GGVKLAKSPEEAREF 72 (388)
T ss_pred CCCCHHHHHHHHHHcCCCCCCCeeeCCHHHHHHHHHHcCCC-cEEEEEeeCCCCCccc-------ccEEEcCCHHHHHHH
Confidence 78999999999999999999999999999999999999 98 9999999777788886 999999999999999
Q ss_pred HHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEe-ecCCCCcchhcccccCCCeEEEEecCC
Q psy12143 113 AGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLI-ASSQGGVNIEEVAAENPSAILYEPVDI 191 (443)
Q Consensus 113 ~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~-~g~~GGv~vE~l~~~~~d~v~~~~l~p 191 (443)
+++++.+...+++..+.+..+.+|+||+|++++.|+|+|+++||+| ||+++ +|..||+++|.++|++|+++.+++++|
T Consensus 73 ~~~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~f-gpvv~~~s~~GG~~vE~~~d~~~~~~~~~~l~p 151 (388)
T PRK00696 73 AKQILGMTLVTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRAT-RRVVFMASTEGGMDIEEVAEETPEKIHKVAIDP 151 (388)
T ss_pred HHHhhccceeeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCC-CceEEEEeCCCCcchhhhcccCcceeEEEEcCC
Confidence 9999876322233344566678999999999999999999999996 88765 666999999999998899888889999
Q ss_pred CCCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHHHhhhhCCCeEEeeeceeEccCCCEEEEeEEEEecCcchhhhhhhhc
Q psy12143 192 TVGITKEQALKVADAVGL-KAKRDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFD 270 (443)
Q Consensus 192 ~~~l~~~~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~~~~~~lEINPl~v~~~g~~~alDa~i~l~~~a~~rqp~i~~ 270 (443)
..+++..+|++|++.+++ +.|.+++++++.+||+++.+.++.++|||||+++++|+++|+|+|+.+|++|.|||+++.+
T Consensus 152 ~~~~~~~~a~~~~~~~~~~~~~~~~l~~~l~~l~~l~~~~~~~~leiNPl~v~~~g~~~a~Dak~~ld~~a~~r~~~~~~ 231 (388)
T PRK00696 152 LTGLQPFQAREIAFKLGLPGEQVKQFAKILMGLYKAFVEKDASLVEINPLVVTKDGDLIALDAKINFDDNALFRHPDLAE 231 (388)
T ss_pred CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCccEEEEeceEECCCCcEEEEeeEEeecCCccccCHhHHh
Confidence 877888999999999999 8899999999999999999999999999999999998899999999999999999999999
Q ss_pred ccCCccCCHHHHHHhcCCCeEeecCCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCc
Q psy12143 271 LRDWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKV 350 (443)
Q Consensus 271 ~~~~~~~~~~e~~a~~~~l~~~~~~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~v 350 (443)
+++..+.++.|..+..++++|+++++||+|||||||+|++++|++..+|++++||+|++|..+++.|.++++++++||++
T Consensus 232 ~~~~~~~~~~e~~~~~~~~~~v~l~~~i~ii~ng~G~~~~~~D~l~~~g~~~~NPvDl~g~~~~e~~~~aL~~l~~d~~v 311 (388)
T PRK00696 232 LRDLSEEDPLEAEASKYGLNYVKLDGNIGCMVNGAGLAMATMDIIKLYGGEPANFLDVGGGATAERVAEAFKIILSDPNV 311 (388)
T ss_pred hcCCCcCChhhhHHHhcCCcEEecCCcEEEEECCchHHHHHHHHHHHcCCCcCCeEEecCCCCHHHHHHHHHHHhcCCCC
Confidence 98888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCC--CCcccCCCHHHHHHHHHHHH
Q psy12143 351 CAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAA--MKILPCDNLDEAARLAVKLS 424 (443)
Q Consensus 351 d~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~G--iP~~~f~s~e~Av~al~~l~ 424 (443)
|+|+++++++...++.++++|+++.++.+.+|||++++.|...++++++|+++| +|+ |++|++|++++.+++
T Consensus 312 d~vlv~~~~~~~~~~~va~~i~~~~~~~~~~kPvv~~~~g~~~~~~~~~L~~~Gi~ip~--f~~pe~A~~al~~~~ 385 (388)
T PRK00696 312 KAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPLVVRLEGTNVELGKKILAESGLNIIA--ADTLDDAAQKAVEAA 385 (388)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcee--cCCHHHHHHHHHHHh
Confidence 999998776677788999999998876445799988887866778888999999 557 999999999999775
No 6
>PLN02235 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=5.6e-67 Score=530.33 Aligned_cols=372 Identities=24% Similarity=0.321 Sum_probs=338.5
Q ss_pred cCCCHHHHHHHHHHC-----CCCCCCeeec-CCHHHHHHHHHH---cCCCeEEEEEeecCCCCCccccccCccCcEEEeC
Q psy12143 34 LNVHEHVSYTLLKEG-----GIPVPPFGVA-KTKKEAGEIAKK---LNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVD 104 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~-----GIpv~~~~~v-~s~~ea~~~a~~---lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~ 104 (443)
.+|+||++|++|++| |||+|.+.++ ++.+|+.+++++ +|.+++|+|+|++.|||||+ |||+++.
T Consensus 4 ~~l~EyqaK~ll~~~~~~~~gipvP~~~v~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGKa-------GGVk~~~ 76 (423)
T PLN02235 4 KKIREYDSKRLLKEHLKRLAGIDLPIRSAQVTESTDFNELANKEPWLSSTKLVVKPDMLFGKRGKS-------GLVALNL 76 (423)
T ss_pred ccccHHHHHHHHHHhhcccCCCCCCCCeeccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCCccc-------CceEEeC
Confidence 579999999999999 9999999988 999999999887 88756799999999999998 9999999
Q ss_pred CHHHHHHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeE
Q psy12143 105 TPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAI 184 (443)
Q Consensus 105 s~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v 184 (443)
|++|+.+++++|+++.+.++ ++.| .+++||||+++++.+|+|++++.|+.. + .+++|.+||++||. +|+.+
T Consensus 77 s~~Ea~~~a~~~Lg~~l~t~--g~~G-~v~~vLVEe~v~i~~E~Ylsi~~DR~~-~-~ii~S~~GGvdIEe----~pe~i 147 (423)
T PLN02235 77 DLAQVATFVKERLGKEVEMG--GCKG-PITTFIVEPFVPHDQEFYLSIVSDRLG-C-SISFSECGGIEIEE----NWDKV 147 (423)
T ss_pred CHHHHHHHHHHHhCCceEec--CCCc-cEeEEEEEecCCCcceEEEEEEEecCC-C-EEEEECCCCCcccC----ChhHe
Confidence 99999999999999875322 5566 789999999999999999999999985 3 38888999999996 47899
Q ss_pred EEEecCCCCCCCHHHHHHHHHHcCCchhHHHHHHHHHHHHHhhhhCCCeEEeeeceeEccCCCEEEEeEEEEecCcchhh
Q psy12143 185 LYEPVDITVGITKEQALKVADAVGLKAKRDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFR 264 (443)
Q Consensus 185 ~~~~l~p~~~l~~~~a~~~l~~lg~g~d~~~l~~~l~~l~~l~~~~~~~~lEINPl~v~~~g~~~alDa~i~l~~~a~~r 264 (443)
.+++++|..++++.+++.++..+++ ...+++.+++.+|+++|.+.|++++|||||++ .+|+++|+|+++.+||||.||
T Consensus 148 ~k~~Id~~~gl~~~~~~~~~~~l~~-~~~~~~~~~l~~Ly~~F~~~D~tllEINPLv~-~dg~~~alDaK~~~DDnA~fR 225 (423)
T PLN02235 148 KTIFLPTEAPLTSEICAPLIATLPL-EIRGKIEEFIKGVFAVFQDLDFTFLEMNPFTL-VDGEPYPLDMRGELDDTAAFK 225 (423)
T ss_pred EEEEcCCCCCCCHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHcCCeEEEecceEe-eCCCEEEEEeEEcccCCCccc
Confidence 9999999999999999999987764 56788999999999999999999999999999 888999999999999999999
Q ss_pred hhh-hhcccCC----ccCCHHHH------HHhcCCCeE--eecCCcEEEEEcchhHHHHHHHHHHHcC--CCCCCeeeec
Q psy12143 265 QKA-LFDLRDW----SQEDAKEV------EAAKHSLNY--IALDGSIGCLVNGAGLAMATMDIIKLHG--GEPANFLDVG 329 (443)
Q Consensus 265 qp~-i~~~~~~----~~~~~~e~------~a~~~~l~~--~~~~g~iaiitngGG~g~la~D~~~~~G--~~~~NPvDl~ 329 (443)
|++ |..++++ ++.++.|. ++..++++| ++++||||+|+||||++|.++|++..+| ++|+||+|++
T Consensus 226 ~~~~~~~~~f~~~fgr~~~~~E~~~~~~d~a~~~~l~y~~v~ldG~Ig~mvnGAGlamaTmD~I~~~G~~g~pANFlDvG 305 (423)
T PLN02235 226 NFKKWGNIEFPLPFGRVMSPTESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGNYAEYS 305 (423)
T ss_pred CHhHhhhhcccccccCCCCHHHHhhccchhhhccCCceEEeCCCCeEEEEecCcHHHHHHHHHHHHcCCCCCCceeeecC
Confidence 998 7655322 34478888 667788999 8899999999999999999999999999 8999999999
Q ss_pred CCCCHHHHHHHHHHHH----cCCCccEEEEEccCCCCChHHHH---HHHHHHHHHcC-----CCCcEEEEeCCCCHHHHH
Q psy12143 330 GGATAAQVKEAFKIIT----ADPKVCAIMVNIFGGIMRCDVIA---EGIIAAAQELS-----LKIPIICRLQGTNVDDAK 397 (443)
Q Consensus 330 g~~~~~~~~~al~~ll----~dp~vd~vlv~i~~~~~~~~~~a---~~i~~~~~~~~-----~~kpiv~~~~g~~~~~~~ 397 (443)
|+++.+..++++++++ +||+++++||||+||+++|+.+| ++|++++++.+ .++|||+|+.|++.++++
T Consensus 306 G~a~~e~v~~a~~iil~~~~~~~~vk~ilvnIfGGI~rcd~VA~tf~GIi~A~~e~~~kl~~~~vpivVRl~GtN~eeG~ 385 (423)
T PLN02235 306 GAPNEEEVLQYARVVIDCATANPDGRKRALLIGGGIANFTDVAATFNGIIRALREKESKLKAARMHIFVRRGGPNYQKGL 385 (423)
T ss_pred CCCCHHHHHHHHHHHHhhhhcCCCCcEEEEEEecccccchhhhhhhhHHHHHHHHhhhccccCCccEEEECCCCCHHHHH
Confidence 9999999999999999 89999999999999999999999 99999999864 468999999999999999
Q ss_pred HHHH----HCCCCcccCC---CHHHHHHHHHHH
Q psy12143 398 VLIA----SAAMKILPCD---NLDEAARLAVKL 423 (443)
Q Consensus 398 ~~L~----~~GiP~~~f~---s~e~Av~al~~l 423 (443)
++|+ +.|+|+++|+ ++++|++....+
T Consensus 386 ~il~e~~~~~gl~i~~~~~~~~m~~a~~~av~~ 418 (423)
T PLN02235 386 AKMRALGEEIGVPIEVYGPEATMTGICKQAIDY 418 (423)
T ss_pred HHHHHhHHhcCCcEEEeCCCCCHHHHHHHHHhh
Confidence 9998 8999988899 999999987753
No 7
>KOG1447|consensus
Probab=100.00 E-value=7.4e-63 Score=462.62 Aligned_cols=403 Identities=50% Similarity=0.788 Sum_probs=379.6
Q ss_pred cccccccccccc--cccccCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccC
Q psy12143 18 LKALSAAPSWSQ--QKRNLNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGG 95 (443)
Q Consensus 18 ~~~~~~~~~~~~--~~~~~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~ 95 (443)
|++++.+.+.++ |+|+.+|.|+++|++|.+||+.+-++.++.+..|+.+.+..++.+-.|+|+|+++|||||+.|.++
T Consensus 2 lra~~~~s~~~~k~~rR~LNLqEfQSK~~l~k~Gv~vQ~F~Va~n~kea~E~~k~f~~~EyVvKAQILAGGRGKG~F~nG 81 (412)
T KOG1447|consen 2 LRAAGNLSKSMMKSQRRFLNLQEFQSKEILSKNGVRVQRFFVADNAKEALEAAKRFNAKEYVVKAQILAGGRGKGVFNNG 81 (412)
T ss_pred chhhhhhHHHHHHhhhhhccHHHhhhHHHHHhcCeeEEEEEEecCcHHHHHHHHhcCCcceEEeeeeeecCcccceecCC
Confidence 344444444443 457889999999999999999999999999999999999999875689999999999999999999
Q ss_pred ccCcEEEeCCHHHHHHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhc
Q psy12143 96 LKGGVKMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEE 175 (443)
Q Consensus 96 ~~GGV~l~~s~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~ 175 (443)
..|||.+-.++.++.+..++|+++...++|+...|..++.++|-+.+.+.+|-|+.+..|+...||+++.+..||+++|.
T Consensus 82 ~KGGVhiTk~k~~vl~l~~qMIG~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDRe~NGPVlvaSP~GGmDIEa 161 (412)
T KOG1447|consen 82 LKGGVHITKDKNVVLQLAKQMIGYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRECNGPVLVASPQGGMDIEA 161 (412)
T ss_pred ccceeEEecCHhHHHHHHHHHHhhhhhhccCCccceeeeeEEEeeccccchheeeeeeeccccCCCEEEecCCCCccHHH
Confidence 99999999999999999999999988888888888888999999999999999999999999999999999999999999
Q ss_pred ccccCCCeEEEEecCCCCCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHHHhhhhCCCeEEeeeceeEccCCCEEEEeEE
Q psy12143 176 VAAENPSAILYEPVDITVGITKEQALKVADAVGL-KAKRDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAK 254 (443)
Q Consensus 176 l~~~~~d~v~~~~l~p~~~l~~~~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~~~~~~lEINPl~v~~~g~~~alDa~ 254 (443)
+...+|+.+++.|++-..++.+.++.+|.+.|+| |....+.++-+.+|+.+|..-|.+-+|||||.-+++|+++++||+
T Consensus 162 VAe~tPE~Ifk~piDI~~gi~esq~l~~Ak~L~F~G~l~~~aA~eI~kLY~LF~avDAtQvEiNPl~ET~~G~V~cvDAK 241 (412)
T KOG1447|consen 162 VAESTPELIFKEPIDIFEGIKESQALRMAKNLGFVGPLKSQAADEITKLYNLFLAVDATQVEINPLGETPEGQVVCVDAK 241 (412)
T ss_pred HhhhChHhhccccchhccCCchHHHHHHHHhccccCcHHHHHHHHHHHHHHHHhhhcceEEEecccccCCCceEEEEeee
Confidence 9999999999999998888999999999999999 999999999999999999999999999999999999999999999
Q ss_pred EEecCcchhhhhhhhcccCCccCCHHHHHHhcCCCeEeecCCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCH
Q psy12143 255 MRFDDNAEFRQKALFDLRDWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATA 334 (443)
Q Consensus 255 i~l~~~a~~rqp~i~~~~~~~~~~~~e~~a~~~~l~~~~~~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~ 334 (443)
|-+||+|.|||.+|+.+++.++.+|.|.++.+..++|+.++|+|+++.||+|++|.++|.+...||+|+||+|++|.+..
T Consensus 242 ~NFDDnA~fRQKdIFamd~~eE~dPrEveAakynLnYigmDGNIaClVNGAGLAMATmDiIkLnGGePANFLDvGGgV~E 321 (412)
T KOG1447|consen 242 INFDDNAEFRQKDIFAMDDKEENDPREVEAAKYNLNYIGMDGNIACLVNGAGLAMATMDIIKLNGGEPANFLDVGGGVKE 321 (412)
T ss_pred ccCCchHhhhhcceeecccccccCchhhhhhhcCcceeeccCceEEEEccchhhhheeeeEEecCCCCcceeeccCcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcccCCCHH
Q psy12143 335 AQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLD 414 (443)
Q Consensus 335 ~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~~f~s~e 414 (443)
+..+++++++.+||.|++||||+||++.+|..+|.+|+.++++...+.|+|+|+-|++.+++.++|..+|+|+....+.+
T Consensus 322 dqV~~Af~ilTaDPkVk~iLvNiFGGIVNCAtIANGiv~A~~kl~LnVPlVVRLEGTNV~~A~~Ilk~SGLpI~tA~dLd 401 (412)
T KOG1447|consen 322 DQVYQAFKILTADPKVKAILVNIFGGIVNCATIANGIVKACRKLELNVPLVVRLEGTNVQEAQKILKKSGLPITTAIDLD 401 (412)
T ss_pred HHHHHHhhhhccCCceeEEEEehhcceehhHhHhhHHHHHHHhhcCCCcEEEEEcCCCHHHHHHHHHhcCCceeeccchH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999997777888
Q ss_pred HHHHHH
Q psy12143 415 EAARLA 420 (443)
Q Consensus 415 ~Av~al 420 (443)
.|++..
T Consensus 402 dAA~KA 407 (412)
T KOG1447|consen 402 DAAKKA 407 (412)
T ss_pred HHHHHH
Confidence 887754
No 8
>KOG2799|consensus
Probab=100.00 E-value=2.7e-60 Score=460.21 Aligned_cols=419 Identities=58% Similarity=0.866 Sum_probs=401.5
Q ss_pred ccccccccccCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeC
Q psy12143 25 PSWSQQKRNLNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVD 104 (443)
Q Consensus 25 ~~~~~~~~~~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~ 104 (443)
++..||.|+..++||.+.+||..||+.+|++.++.|+|||.++++++|..-||+|+|.+++||||++|.|+..|||.++-
T Consensus 14 q~~~~~~r~L~~hey~~~~ll~~~Gv~vp~g~vA~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf 93 (434)
T KOG2799|consen 14 QSYFQAERSLGIHEYRSAALLRKYGINVPLGYVAKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVF 93 (434)
T ss_pred hhhhhHhhhhhHHHHHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEe
Confidence 55567778899999999999999999999999999999999999999876899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeE
Q psy12143 105 TPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAI 184 (443)
Q Consensus 105 s~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v 184 (443)
+|+|+++.+.+|++..+.++|+++.|..+..|+|-+......|.|++++.|+.+.||+++.+..||+.+|.++..+||.+
T Consensus 94 ~p~Eak~va~qmiG~kLiTKQtG~~gk~c~~v~iC~Rk~~~~e~yFsil~dr~~k~pliIas~kgg~~ie~vae~~pdai 173 (434)
T KOG2799|consen 94 SPQEAKAVASQMIGKKLITKQTGPAGKACSEVYICERKHTRAEYYFSILMDRHTKGPLIIASSKGGVNIEEVAEDTPDAI 173 (434)
T ss_pred ChHHHHHHHHHhhcceeeeeccCCCCCccceEEEeeecchhhHHHHHHHHhcccCCCEEEEeccCCccHHHHhhhCccch
Confidence 99999999999999988889999999999999999998888999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHHHhhhhCCCeEEeeeceeEccCC-CEEEEeEEEEecCcch
Q psy12143 185 LYEPVDITVGITKEQALKVADAVGL-KAKRDITAEMLIKMYALFISKDASLIEINPYAEDATG-NFFGLDAKMRFDDNAE 262 (443)
Q Consensus 185 ~~~~l~p~~~l~~~~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~~~~~~lEINPl~v~~~g-~~~alDa~i~l~~~a~ 262 (443)
...|++-..+++++.|..+...||+ ........+.+.+|+.+|...+.+-+|||||.-..++ .+++-|+++-+|+|+.
T Consensus 174 ~k~pi~~~~Gls~~~a~~v~~~lgfs~~~~~~a~~~~~kly~vf~~~dat~veinpl~e~t~d~~v~c~dak~~fd~na~ 253 (434)
T KOG2799|consen 174 IKKPIDNNTGLSPEIACLVADKLGFSPDGIRKAAKAVPKLYKVFHKSDATQVEINPLAEITSDHKVTCMDAKLNFDDNAA 253 (434)
T ss_pred hcccccccCCCCHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHHhhccceeEEecchhhcccCceeeechhhhcccccHH
Confidence 9999999999999999999999999 7889999999999999999999999999999987766 6899999999999999
Q ss_pred hhhhhhhcccCCccCCHHHHHHhcCCCeEeecCCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHH
Q psy12143 263 FRQKALFDLRDWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFK 342 (443)
Q Consensus 263 ~rqp~i~~~~~~~~~~~~e~~a~~~~l~~~~~~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~ 342 (443)
|||..++.++|+.++++.|..+.+++++|++++|+|+++.||.|++|.++|.+..+|+.|+|++|++|.++.+....+++
T Consensus 254 fRq~~iF~~rd~~QEd~re~~aak~~ln~igldG~igC~vngaglamaTmdiiklhgg~panfldVGg~Atve~v~eaf~ 333 (434)
T KOG2799|consen 254 FRQKKIFLLRDLSQEDPREVTAAKVDLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVEQVREAFS 333 (434)
T ss_pred HHhhhhhhccchhhcCchhhhHHHhccceeccCCccceeeccchhhhhheeeeeecCCCCcceeeeCCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcccCCCHHHHHHHHHH
Q psy12143 343 IITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVK 422 (443)
Q Consensus 343 ~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~ 422 (443)
++.+||.+.++|||++|++..||.+|.+++.+.+++..+.||+++..|++..++..++...|+-++.|++.++|++....
T Consensus 334 litsd~kv~ailvnifGgi~rCDvia~Giv~aar~l~~~ipiv~rlqgt~v~~ak~~i~~sgmri~~~deldeaa~~~v~ 413 (434)
T KOG2799|consen 334 LITSDKKVMAILVNIFGGIMRCDVIAFGIVLAARELELNIPIVVRLQGTRVEAAKPIINTSGMRIRSFDELDEAAKKAVG 413 (434)
T ss_pred HHhcChhHHHHHHHHhcCeeeccceecchhhhhhhhhcCCCEEEEecCCchhhhhhhHhhcCceEEechhhhHHhhhhcc
Confidence 99999999999999999999999999999999999888999999999999999999999999988889999999999999
Q ss_pred HHHHHhHHHhcCceEEEeccC
Q psy12143 423 LSSIVGLARAAKMEVNFEIPL 443 (443)
Q Consensus 423 l~~~~~~~~~~~~~~~~~~~~ 443 (443)
++.++.+|++....|.|+.|+
T Consensus 414 ~S~ivela~e~~V~v~f~lp~ 434 (434)
T KOG2799|consen 414 GSTIVELASEKEVHVAFGLPQ 434 (434)
T ss_pred cchHHHHhhhccccccCCCCC
Confidence 999999999999999999995
No 9
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=100.00 E-value=2.6e-40 Score=314.05 Aligned_cols=204 Identities=25% Similarity=0.373 Sum_probs=149.6
Q ss_pred ccccCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEe-CCHHHH
Q psy12143 31 KRNLNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMV-DTPEEA 109 (443)
Q Consensus 31 ~~~~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~-~s~ee~ 109 (443)
.++..|+|+++|++|.+||||+|++++++|.+|+.++++++|| |||+|+.++. ..||||. |||+++ .|++++
T Consensus 5 ~g~~~L~e~e~~~lL~~yGI~~~~~~~~~~~~ea~~~a~~ig~-PvvlKi~sp~-----i~HKsd~-GgV~L~l~~~~~v 77 (222)
T PF13549_consen 5 EGRGWLTEAEAKELLAAYGIPVPPTRLVTSAEEAVAAAEEIGF-PVVLKIVSPD-----IAHKSDV-GGVRLNLNSPEEV 77 (222)
T ss_dssp TT--EE-HHHHHHHHHTTT------EEESSHHHHHHHHHHH-S-SEEEEEE-TT--------HHHH-T-EEEEE-SHHHH
T ss_pred CCCCccCHHHHHHHHHHcCcCCCCeeEeCCHHHHHHHHHHhCC-CEEEEEecCC-----CCcCCCC-CcEEECCCCHHHH
Confidence 4557899999999999999999999999999999999999999 9999998763 2577777 999997 799999
Q ss_pred HHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeC-CCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEe
Q psy12143 110 EEVAGKMIGDYLITKQTGEKGRICNAVMVTERKY-PRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEP 188 (443)
Q Consensus 110 ~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~-~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~ 188 (443)
++++++|..+. +.+.| +..+++|+||+|++ ++.|+.+|+.+||.| ||+++|| .||+++|.++| .. +.
T Consensus 78 ~~a~~~l~~~~---~~~~p-~~~~~gvlVq~m~~~~g~El~vG~~~Dp~F-GPvv~~G-~GG~~vE~~~D----~~--~~ 145 (222)
T PF13549_consen 78 REAFERLRERV---AAHHP-GARIDGVLVQEMAPSGGRELIVGVRRDPQF-GPVVMFG-LGGIFVELLKD----VA--FR 145 (222)
T ss_dssp HHHHHHHHHHH---HHH-T-T----EEEEEE------EEEEEEEEEETTT-EEEEEEE-E-STTHHHH-------E--EE
T ss_pred HHHHHHHHHHH---HHhCC-CCccceEEEEEcccCCcEEEEEEEEECCCC-CCEEEEc-CCCceeeeecc----eE--Ee
Confidence 99999998875 22333 34478999999998 999999999999995 9999999 99999999984 44 45
Q ss_pred cCCCCCCCHHHHHHHHHHc-------CC-c---hhHHHHHHHHHHHHHhhhhC-CCeEEeeeceeEccCCCEEEEeEEEE
Q psy12143 189 VDITVGITKEQALKVADAV-------GL-K---AKRDITAEMLIKMYALFISK-DASLIEINPYAEDATGNFFGLDAKMR 256 (443)
Q Consensus 189 l~p~~~l~~~~a~~~l~~l-------g~-g---~d~~~l~~~l~~l~~l~~~~-~~~~lEINPl~v~~~g~~~alDa~i~ 256 (443)
++| ++..+|++|++++ |+ | .|.+++++++.++|+++.++ ++.++||||++++++| ++|+|++|+
T Consensus 146 l~P---l~~~~a~~mi~~l~~~~lL~G~RG~p~~d~~al~~~l~~ls~l~~~~p~I~eldiNPl~v~~~g-~~avDa~i~ 221 (222)
T PF13549_consen 146 LPP---LSEADAREMIRELRAYPLLRGYRGRPPADLDALADLLVRLSQLAADLPEIAELDINPLIVTPDG-AVAVDARIR 221 (222)
T ss_dssp ESS-----HHHHHHHHHTSTTHHHHH-------B-HHHHHHHHHHHHHHHHHTTTEEEEEEEEEEE-BS--EEE--EEEE
T ss_pred eCC---CCHHHHHHHHHHHHhHHhhcccCCCCCcCHHHHHHHHHHHHHHHHhCCCEEEEEeeceEEcCCc-eEEEEEEEE
Confidence 799 9999999999987 34 3 59999999999999999885 7899999999999999 999999998
Q ss_pred e
Q psy12143 257 F 257 (443)
Q Consensus 257 l 257 (443)
+
T Consensus 222 l 222 (222)
T PF13549_consen 222 L 222 (222)
T ss_dssp E
T ss_pred C
Confidence 5
No 10
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=100.00 E-value=3.2e-40 Score=308.92 Aligned_cols=201 Identities=51% Similarity=0.727 Sum_probs=180.5
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAG 114 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~ 114 (443)
+|+||++|++|++||||+|++.+++|++|+.++++++|.+++|+|+|++.|||||+ |||+++.|++|+.++++
T Consensus 1 ~l~EyqaK~ll~~~gi~vp~g~~a~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~-------GgVk~~~s~~ea~~~a~ 73 (202)
T PF08442_consen 1 NLHEYQAKELLRKYGIPVPRGVVATSPEEAREAAKELGGKPLVVKAQVLAGGRGKA-------GGVKIAKSPEEAKEAAK 73 (202)
T ss_dssp BE-HHHHHHHHHCTT----SEEEESSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTT-------TCEEEESSHHHHHHHHH
T ss_pred CchHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCcEEEEEeEeecCcccC-------CceeecCCHHHHHHHHH
Confidence 58999999999999999999999999999999999999867899999999999998 99999999999999999
Q ss_pred HHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCCCC
Q psy12143 115 KMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVG 194 (443)
Q Consensus 115 ~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~~~ 194 (443)
+|+++.+.++|+++.|..++.||||+++++.+|+|++++.|+...+|++++|..||++||.++.++||.+.+++++|..+
T Consensus 74 ~mlg~~l~T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~~p~ii~S~~GGvdIEeva~~~P~~i~~~~id~~~g 153 (202)
T PF08442_consen 74 EMLGKTLKTKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRESRGPVIIASKEGGVDIEEVAAENPEKIIKFPIDPTEG 153 (202)
T ss_dssp TTTTSEEE-TTSTTTEEEE--EEEEE---CCEEEEEEEEEETTTTEEEEEEESSTSSTHHHHHHHSGGGEEEEEEBTTTB
T ss_pred HHhCCceEeeecCCCCCEeeEEEEEecCccCceEEEEEEeccCCCceEEEEeccCCccHHHHhhhChhhEEEEecCCCCC
Confidence 99999888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCC-chhHHHHHHHHHHHHHhhhhCCCeEEeeeceeE
Q psy12143 195 ITKEQALKVADAVGL-KAKRDITAEMLIKMYALFISKDASLIEINPYAE 242 (443)
Q Consensus 195 l~~~~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~~~~~~lEINPl~v 242 (443)
++++++++++..+|+ +...+++++++.+|+++|.+.|++++|||||++
T Consensus 154 ~~~~~~~~i~~~lg~~~~~~~~~~~~l~~Ly~~F~~~DatllEINPL~~ 202 (202)
T PF08442_consen 154 LTPYQAREIAKKLGLPGKLAEQLADILKKLYRLFREYDATLLEINPLVE 202 (202)
T ss_dssp --HHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHcCCcEEEecCCCC
Confidence 999999999999999 888999999999999999999999999999975
No 11
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=99.87 E-value=4.5e-23 Score=220.01 Aligned_cols=360 Identities=19% Similarity=0.163 Sum_probs=230.5
Q ss_pred cCCCHHHHHHHHHHCC----CCCCCee------ecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEe
Q psy12143 34 LNVHEHVSYTLLKEGG----IPVPPFG------VAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMV 103 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~G----Ipv~~~~------~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~ 103 (443)
...-+++.++.|.+|| +|+++.. .+.+..........+++ ++|.|...+.. .|+++. +||+.+
T Consensus 22 ~~~vg~~i~~nL~~~g~g~i~PVnp~~~~v~G~~ay~s~~~lp~~~dlav-~~v~~~~~~~i-----~~~~~~-kGv~~~ 94 (598)
T COG1042 22 PGKLGYEILRNLLEYGQGKIYPVNPKYDEVLGVKAYTSVADLPDAPDLAV-IVVPAKVVPEI-----VHELGE-KGVKGA 94 (598)
T ss_pred cchhHHHHHHHHHhcCCCceEecCccccccccccccchHhhCCCCCCeeE-EEechhhhHHH-----HHHhhc-cCCceE
Confidence 3456788999999999 9998877 55544444455567888 89988765421 222333 455553
Q ss_pred -CCHHHHHHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEE--EEEeccCCCcEEeecCCCCcchhcccccC
Q psy12143 104 -DTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFA--FMMERSFAGPVLIASSQGGVNIEEVAAEN 180 (443)
Q Consensus 104 -~s~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vg--v~~D~~~~gpvv~~g~~GGv~vE~l~~~~ 180 (443)
...+...++.+++..... +..+........++.++..+..+..+| ...+|.+ ++. ++ -|+.+++...+
T Consensus 95 i~is~gf~e~~~~~~~~e~---~~~~~a~~~~~rligPn~~G~~~~~~glna~f~p~~-~~~--~~-g~~afvsqsga-- 165 (598)
T COG1042 95 IVISAGFREAGEEGMELEK---ELVEAARKYGMRIIGPNCLGLINPIIGLNATFDPVF-GLG--RG-GGGAFVSQSGA-- 165 (598)
T ss_pred EEechhhhHHhhhHhHHHH---HHHHHHHhcCceEeccccccccccccccccccCccc-ccc--cC-CCeEEEEechH--
Confidence 333334444433222110 000001113578999999989999999 7888875 454 44 46677776653
Q ss_pred CCeEEEEecCCCCCCCHHHHHHHHHHcC-C-c--hhHHHHHHHHHHHH--------HhhhhC-CCeEEeeeceeEccCC-
Q psy12143 181 PSAILYEPVDITVGITKEQALKVADAVG-L-K--AKRDITAEMLIKMY--------ALFISK-DASLIEINPYAEDATG- 246 (443)
Q Consensus 181 ~d~v~~~~l~p~~~l~~~~a~~~l~~lg-~-g--~d~~~l~~~l~~l~--------~l~~~~-~~~~lEINPl~v~~~g- 246 (443)
.. ..+.| .+..+ +|-.+.- + | .|+ ...+.+..+. .++.+. +....++||......+
T Consensus 166 --v~--~~il~---~~~~~--~~g~s~~vs~gn~ad~-~~~d~~~~~~~D~~tk~i~Ly~E~~~~~r~fl~~a~~~~~~k 235 (598)
T COG1042 166 --VS--FAILD---WANED--GMGFSIKVSLGNAADR-DESDLLEYLADDPRTKAIGLYIEGVKDGRKFLNAARAAERKK 235 (598)
T ss_pred --HH--Hhccc---hhhhc--CCceeEEEeecchhhc-CchHhHHHHhhCccceEEEEEeccchhHHHHHHHHHHHhcCC
Confidence 22 23344 22211 1211110 0 1 011 0111122211 112221 1223457776654432
Q ss_pred CEEEEeEEEEecC------------------cchhhhhhhhcccCCccCCHHHHHHhcCCCeEee-c-CCcEEEEEcchh
Q psy12143 247 NFFGLDAKMRFDD------------------NAEFRQKALFDLRDWSQEDAKEVEAAKHSLNYIA-L-DGSIGCLVNGAG 306 (443)
Q Consensus 247 ~~~alDa~i~l~~------------------~a~~rqp~i~~~~~~~~~~~~e~~a~~~~l~~~~-~-~g~iaiitngGG 306 (443)
.++++|+..+... ++.|||.|++++ .+..|+.+....+.... + +.|++++|||||
T Consensus 236 pii~lk~gr~~~~akAa~shTgslag~~~~y~Aa~~~agvir~-----~~~~elf~~~k~l~~~~~~~g~~~~ivtn~Gg 310 (598)
T COG1042 236 PIIALKAGRSEAGAKAAASHTGSLAGSDEAYDAAFKQAGVIRV-----ESIEELFDAAKALSHQPPPAGDRVAIITNGGG 310 (598)
T ss_pred CEEEEeccCCHHHHHHHhcccccccccchhhHHHHHhhCceec-----cChHHHHHHHHHhccCCCCCCcceeEEecCCC
Confidence 2788877755321 446888888876 45557777665565444 3 567999999999
Q ss_pred HHHHHHHHHHHcC---------------------CCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEE-EccCCCCCh
Q psy12143 307 LAMATMDIIKLHG---------------------GEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMV-NIFGGIMRC 364 (443)
Q Consensus 307 ~g~la~D~~~~~G---------------------~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv-~i~~~~~~~ 364 (443)
.|++++|.+.+.| .+..||+|++|+++.+.|.++++.+++|+++|++++ ++++..+..
T Consensus 311 ~gvla~D~l~~~g~~l~~~~~~~~~~l~~~Lp~~~~~~NPvD~~~~a~~e~y~~~~~~~~~~~~~~~llvi~~~~~~~~~ 390 (598)
T COG1042 311 PGVLAADALEERGLKLAELSEETIEKLRSRLPPHASVKNPVDLTGDADAERYKKTLEILLRDENVDALLVIVLPPASADP 390 (598)
T ss_pred ccccchhHHHHcCCCcCCCCHHHHHHHHhhcCccccccCCeeeecCCcHHHHHHHHHHHHhccCCceEEEEecCCCCCCc
Confidence 9999999999999 336899999999999999999999999999999998 444544445
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEE-eCCCCHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHHHHH
Q psy12143 365 DVIAEGIIAAAQELSLKIPIICR-LQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSSIV 427 (443)
Q Consensus 365 ~~~a~~i~~~~~~~~~~kpiv~~-~~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~~~ 427 (443)
...++.++.+ .....+||+++. ++|.....+++.|++.|||+ |.+|++|++++.+++.--
T Consensus 391 ~~~a~~~~~~-~~~~~~k~~v~~~~gg~~~~~~~~~l~~~gip~--~~~pe~a~~a~~~l~~~~ 451 (598)
T COG1042 391 EETAEAIIRA-TAKKRGKPVVVSSMGGESSEKARRLLEEAGIPT--YPTPERAVKALSALARYR 451 (598)
T ss_pred hhhhHHHHHh-hhhhCCCceEEEecCCcchHHHHHHhhhcCCCC--ccCchHHHHHHHHHHHHH
Confidence 6778888875 222357997764 55656778899999999999 999999999998886654
No 12
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=99.83 E-value=5.3e-20 Score=192.73 Aligned_cols=158 Identities=22% Similarity=0.303 Sum_probs=131.2
Q ss_pred cchhhhhhhhcccCCccCCHHHHHHhcCCCeEeec--CCcEEEEEcchhHHHHHHHHHHHcCCC----------------
Q psy12143 260 NAEFRQKALFDLRDWSQEDAKEVEAAKHSLNYIAL--DGSIGCLVNGAGLAMATMDIIKLHGGE---------------- 321 (443)
Q Consensus 260 ~a~~rqp~i~~~~~~~~~~~~e~~a~~~~l~~~~~--~g~iaiitngGG~g~la~D~~~~~G~~---------------- 321 (443)
++.|||.|++++++. +|+......|...++ ++||+|||||||.|++++|.++.+|.+
T Consensus 263 ~a~~~~~Gv~~~~~~-----~el~~~~~~l~~~~~~~g~rvaivs~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~l 337 (447)
T TIGR02717 263 DAAFKQAGVIRADSI-----EELFDLARLLSNQPLPKGNRVAIITNAGGPGVIATDACEENGLELAELSEATKNKLRNIL 337 (447)
T ss_pred HHHHHHCCeEEeCCH-----HHHHHHHHHHhcCCCCCCCeEEEEECCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhC
Confidence 357999999998544 477766666666654 677999999999999999999999943
Q ss_pred -----CCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc-CCCCChHHHHHHHHHHHHHcCCCCcEEEEeCC-CCHH
Q psy12143 322 -----PANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF-GGIMRCDVIAEGIIAAAQELSLKIPIICRLQG-TNVD 394 (443)
Q Consensus 322 -----~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~-~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g-~~~~ 394 (443)
+.||+|+++..+++.|.++++++++||++|+|++.+. .+...++.+++.++++.++. .+||+++++.| ...+
T Consensus 338 p~~~~~~NPlDl~~~~~~~~~~~al~~l~~dp~vd~Vlv~~~~~~~~~~~~~a~~l~~~~~~~-~~KPvv~~~~gg~~~~ 416 (447)
T TIGR02717 338 PPEASIKNPVDVLGDATPERYAKALKTVAEDENVDGVVVVLTPTAMTDPEEVAKGIIEGAKKS-NEKPVVAGFMGGKSVD 416 (447)
T ss_pred ccccccCCCEecCCCCCHHHHHHHHHHHHcCCCCCEEEEEccCCccCCHHHHHHHHHHHHHhc-CCCcEEEEecCCccHH
Confidence 4699999988899999999999999999999998554 33556688999999987773 27999888765 4566
Q ss_pred HHHHHHHHCCCCcccCCCHHHHHHHHHHHHH
Q psy12143 395 DAKVLIASAAMKILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 395 ~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~ 425 (443)
+.++.|+++|||+ |++|++|++++.++.+
T Consensus 417 ~~~~~L~~~Gip~--f~~p~~A~~al~~~~~ 445 (447)
T TIGR02717 417 PAKRILEENGIPN--YTFPERAVKALSALYR 445 (447)
T ss_pred HHHHHHHhCCCCc--cCCHHHHHHHHHHHHh
Confidence 6788899999999 9999999999998865
No 13
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=99.52 E-value=6.8e-14 Score=125.45 Aligned_cols=118 Identities=43% Similarity=0.657 Sum_probs=107.0
Q ss_pred EEcchhHHHHHHHHHHHc--------------CCCCCCeeeecCCCC----------HHHHHHHHHHHHcCCCccEEEEE
Q psy12143 301 LVNGAGLAMATMDIIKLH--------------GGEPANFLDVGGGAT----------AAQVKEAFKIITADPKVCAIMVN 356 (443)
Q Consensus 301 itngGG~g~la~D~~~~~--------------G~~~~NPvDl~g~~~----------~~~~~~al~~ll~dp~vd~vlv~ 356 (443)
+++|||+++-++|.+..+ |..+.|++|++|+.. ++...++++.+++||++++||++
T Consensus 1 l~~GgtL~~Ea~~~i~~~~~~~~sn~~~~~~~g~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~vIlvd 80 (153)
T PF00549_consen 1 LYNGGTLAMEAMDLISDALGDVYSNFKLANPLGGGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVKVILVD 80 (153)
T ss_dssp EESSHHHHHHHHHHHHHTTT------GCCEEETCTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTESEEEEE
T ss_pred CcCcHHHHHHHHHHHHHhhccccccccccccCCCCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCccEEEEE
Confidence 579999999999999999 999999999999999 67799999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHcC---CCCcEEEEeCCCCHH-----HHHHHHHHCCCCcccCCCHHHHHHHH
Q psy12143 357 IFGGIMRCDVIAEGIIAAAQELS---LKIPIICRLQGTNVD-----DAKVLIASAAMKILPCDNLDEAARLA 420 (443)
Q Consensus 357 i~~~~~~~~~~a~~i~~~~~~~~---~~kpiv~~~~g~~~~-----~~~~~L~~~GiP~~~f~s~e~Av~al 420 (443)
+++|+..|++.|.+++++.++.. .++|||++..|++.+ +..+.|+++|+++ +.+-.+|++..
T Consensus 81 ~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~dpq~~~~~~~~L~~~G~~v--~~s~~~A~~~A 150 (153)
T PF00549_consen 81 IVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNADPQGRMGQAGALEDAGVIV--AESNAQAARAA 150 (153)
T ss_dssp EESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCHTTSCHHHHHHHHCTTCSC--HHHHHHHHHHH
T ss_pred eccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeecCCCCCcHHHHHHHHhCCCcc--cccHHHHHHHc
Confidence 99998899999999999988865 679999998888777 7889999999999 88888888764
No 14
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.49 E-value=3e-13 Score=125.65 Aligned_cols=108 Identities=25% Similarity=0.265 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeE-EEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHH
Q psy12143 37 HEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDI-VLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGK 115 (443)
Q Consensus 37 ~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~Pv-VlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~ 115 (443)
|+.++|++|++|||||+++..++|.++|.++.++.++ |+ |||++.+++|| ||.+..|.+|+.+++++
T Consensus 2 SK~faK~fm~~~~IPTa~~~~f~~~~~A~~~l~~~~~-p~~ViKadGla~GK-----------GV~i~~~~~eA~~~l~~ 69 (194)
T PF01071_consen 2 SKSFAKEFMKRYGIPTAKYKVFTDYEEALEYLEEQGY-PYVVIKADGLAAGK-----------GVVIADDREEALEALRE 69 (194)
T ss_dssp BHHHHHHHHHHTT-SB--EEEESSHHHHHHHHHHHSS-SEEEEEESSSCTTT-----------SEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCeeEECCHHHHHHHHHhcCC-CceEEccCCCCCCC-----------EEEEeCCHHHHHHHHHH
Confidence 4678999999999999999999999999999999998 88 99999888765 79999999999999999
Q ss_pred HhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEe
Q psy12143 116 MIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLI 164 (443)
Q Consensus 116 l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~ 164 (443)
++... ..+.....|+||+++. |.|+++.+..|...+-|+..
T Consensus 70 ~~~~~-------~fg~~~~~vvIEE~l~-G~E~S~~a~~dG~~~~~lp~ 110 (194)
T PF01071_consen 70 IFVDR-------KFGDAGSKVVIEEFLE-GEEVSLFALTDGKNFVPLPP 110 (194)
T ss_dssp HHTSS-------TTCCCGSSEEEEE----SEEEEEEEEEESSEEEEEEE
T ss_pred hcccc-------ccCCCCCcEEEEeccC-CeEEEEEEEEcCCeEEECcc
Confidence 98742 1344457899999999 99999999999876555543
No 15
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=99.45 E-value=6.5e-13 Score=125.86 Aligned_cols=169 Identities=23% Similarity=0.290 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHCCCCCCCeeec--CCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHH
Q psy12143 37 HEHVSYTLLKEGGIPVPPFGVA--KTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAG 114 (443)
Q Consensus 37 ~e~~ak~lL~~~GIpv~~~~~v--~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~ 114 (443)
+...+++++++.|+|++++... +|.+|+.++++++|| ||++||. .+|.|+ |.+++.|.+++.++++
T Consensus 1 Dk~~~~~~~~~~gvp~~pg~~~~~~~~eea~~~a~~iGy-PVliKas--~ggGG~---------gm~iv~~~~eL~~~~~ 68 (211)
T PF02786_consen 1 DKIRFRKLAKKLGVPVPPGSTVPISSVEEALEFAEEIGY-PVLIKAS--AGGGGR---------GMRIVHNEEELEEAFE 68 (211)
T ss_dssp SHHHHHHHHHHTT-BBSSBESSSBSSHHHHHHHHHHH-S-SEEEEET--TSSTTT---------SEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhcCC-ceEEeec--cccccc---------ccccccchhhhhhhhh
Confidence 3457899999999999999987 999999999999999 9999996 444444 7889999999999998
Q ss_pred HHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCCCC
Q psy12143 115 KMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVG 194 (443)
Q Consensus 115 ~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~~~ 194 (443)
+...... .. .+ ...++||+++.+.+|+.+.+.+|.. |-++.+| +.+ ...+.++-|.+ -..|...
T Consensus 69 ~~~~~s~---~~--fg--~~~v~iek~i~~~reiEvqvi~D~~--gn~~~~~---~~e-~~~~~hs~dsi---~~~P~~~ 132 (211)
T PF02786_consen 69 RAQRESP---AA--FG--DGPVLIEKFIEGAREIEVQVIRDGK--GNVVHLG---ERE-CSEQRHSQDSI---EEAPAQT 132 (211)
T ss_dssp HHHHHHH---HH--HS--TS-EEEEE--SSEEEEEEEEEEETT--SEEEEEE---EEE-EEEEETTEEEE---EEES-SS
T ss_pred hccccCc---cc--cc--cceEEEeeehhhhhhhhhhhhhccc--cceeeee---eec-cccccccccce---eEeeccc
Confidence 8765431 00 12 3679999999988999999999995 6555444 222 22333444443 3456555
Q ss_pred CCHHH-------HHHHHHHcCC-chhHHHHHHHHHHHHHhhh--hCCCeEEeeeceeE
Q psy12143 195 ITKEQ-------ALKVADAVGL-KAKRDITAEMLIKMYALFI--SKDASLIEINPYAE 242 (443)
Q Consensus 195 l~~~~-------a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~--~~~~~~lEINPl~v 242 (443)
++.+. +.++.+.+|+ |...-++ ++. +.++..+|+||.+-
T Consensus 133 L~~~~~~~l~~~a~~ia~~l~~~G~~tvef---------~~~~~~~~~y~lEvNpR~~ 181 (211)
T PF02786_consen 133 LSDEERQKLREAAKKIARALGYVGAGTVEF---------AVDPDDGEFYFLEVNPRLQ 181 (211)
T ss_dssp S-HHHHHHHHHHHHHHHHHTT-EEEEEEEE---------EEETTTTEEEEEEEESS--
T ss_pred cchHHHHHHHHHHHHHHHhhCeeecceEEE---------EEccCccceeeecccCCCC
Confidence 77754 4444556666 5322111 122 23566789999764
No 16
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=99.34 E-value=2e-11 Score=125.31 Aligned_cols=164 Identities=23% Similarity=0.340 Sum_probs=114.8
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCC-CCccccccCccCcEEEeCCHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGG-RGKGAFKGGLKGGVKMVDTPEEAEEV 112 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~g-k~k~~~~~~~~GGV~l~~s~ee~~~a 112 (443)
..-++...|++|+++|||+|++..+++.+++.++++++|| |+|+||. .+| .|+ |+.++.|.+|+.++
T Consensus 97 ~~~dK~~~k~~l~~~Gip~p~~~~v~s~~~l~~~~~~~g~-P~vlKp~--~~g~~g~---------Gv~~v~~~~el~~a 164 (372)
T PRK06019 97 IAQDRLTEKQFLDKLGIPVAPFAVVDSAEDLEAALADLGL-PAVLKTR--RGGYDGK---------GQWVIRSAEDLEAA 164 (372)
T ss_pred HhcCHHHHHHHHHHCCCCCCCceEeCCHHHHHHHHHHcCC-cEEEEeC--CCCcCCC---------CeEEECCHHHHHHH
Confidence 3467778999999999999999999999999999999999 9999996 322 333 78899999999988
Q ss_pred HHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCC
Q psy12143 113 AGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDIT 192 (443)
Q Consensus 113 ~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~ 192 (443)
++.+. ...++||+|++++.|+++.+.+|.. |-+..+. -+|.... +.++...+.|.
T Consensus 165 ~~~~~---------------~~~~ivEe~I~~~~E~sv~~~~~~~--G~~~~~p-----~~e~~~~---~gi~~~~~~pa 219 (372)
T PRK06019 165 WALLG---------------SVPCILEEFVPFEREVSVIVARGRD--GEVVFYP-----LVENVHR---NGILRTSIAPA 219 (372)
T ss_pred HHhcC---------------CCCEEEEecCCCCeEEEEEEEECCC--CCEEEeC-----CcccEEe---CCEEEEEECCC
Confidence 87651 1469999999989999999999874 5555554 2333321 23444445664
Q ss_pred CCCCHH-------HHHHHHHHcCC-chhHHHHHHHHHHHHHhhhh--CCCeEEeeeceeEccCC
Q psy12143 193 VGITKE-------QALKVADAVGL-KAKRDITAEMLIKMYALFIS--KDASLIEINPYAEDATG 246 (443)
Q Consensus 193 ~~l~~~-------~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~--~~~~~lEINPl~v~~~g 246 (443)
. ++.+ .++++++.||+ |.-. .++|.. .++..+||||..-+ +|
T Consensus 220 ~-~~~~~~~~~~~~a~~i~~~L~~~G~~~----------vEff~~~dg~~~v~EinpR~~~-sg 271 (372)
T PRK06019 220 R-ISAELQAQAEEIASRIAEELDYVGVLA----------VEFFVTGDGELLVNEIAPRPHN-SG 271 (372)
T ss_pred C-CCHHHHHHHHHHHHHHHHHcCccceeE----------EEEEEcCCCeEEEEEecCCccC-cc
Confidence 3 5542 24445555665 4211 123443 23678899998743 45
No 17
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.33 E-value=1.7e-11 Score=140.97 Aligned_cols=168 Identities=24% Similarity=0.330 Sum_probs=116.6
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAG 114 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~ 114 (443)
..+....|++|+++|||+|++..+++.+|+.++++++|| |+|+||....+| + |+.++.|++|+.++++
T Consensus 126 ~~DK~~~k~~l~~~GIpvp~~~~v~s~ee~~~~~~~igy-PvVVKP~~g~gG--~---------Gv~iv~~~eEL~~a~~ 193 (1068)
T PRK12815 126 GEDRERFRALMKELGEPVPESEIVTSVEEALAFAEKIGF-PIIVRPAYTLGG--T---------GGGIAENLEELEQLFK 193 (1068)
T ss_pred hcCHHHHHHHHHHcCcCCCCceeeCCHHHHHHHHHHcCC-CEEEEECcCCCC--C---------ceEEECCHHHHHHHHH
Confidence 356777899999999999999999999999999999999 999999743333 3 5778999999999998
Q ss_pred HHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCCCC
Q psy12143 115 KMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVG 194 (443)
Q Consensus 115 ~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~~~ 194 (443)
++++.. ....++||+++++.+|+++.+.+|.. |-+++++... .++...-++.|.+ .+.|.+.
T Consensus 194 ~~~~~s-----------~~~~vLVEe~I~G~~E~sv~v~rD~~--g~~~~~~~~e--~~~p~gi~tG~s~---~v~Pa~~ 255 (1068)
T PRK12815 194 QGLQAS-----------PIHQCLLEESIAGWKEIEYEVMRDRN--GNCITVCNME--NIDPVGIHTGDSI---VVAPSQT 255 (1068)
T ss_pred HHHhcC-----------CCCeEEEEEccCCCeEEEEEEEEcCC--CCEEEEEece--ecccccccCCceE---EEecCCC
Confidence 776431 13579999999978999999999985 4444444111 1111111122332 2355544
Q ss_pred CCHH-------HHHHHHHHcCC-chhHHHHHHHHHHHHHhhhh---CCCeEEeeeceeE
Q psy12143 195 ITKE-------QALKVADAVGL-KAKRDITAEMLIKMYALFIS---KDASLIEINPYAE 242 (443)
Q Consensus 195 l~~~-------~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~---~~~~~lEINPl~v 242 (443)
++.. .|.++++.||+ |...- +++.+ .+...+||||.+-
T Consensus 256 l~~~~~~~l~~~a~ki~~~Lg~~G~~~v----------ef~l~~~~g~~~ViEINPR~~ 304 (1068)
T PRK12815 256 LTDDEYQMLRSASLKIISALGVVGGCNI----------QFALDPKSKQYYLIEVNPRVS 304 (1068)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCceEE----------EEEEECCCCcEEEEEEecCcc
Confidence 5554 45667777777 53221 23333 2467899999863
No 18
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=99.32 E-value=2e-11 Score=129.75 Aligned_cols=171 Identities=22% Similarity=0.283 Sum_probs=115.1
Q ss_pred CCCHHHHHHHHHHCCCCCCCeee--cCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGV--AKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEV 112 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~--v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a 112 (443)
.-++..+|++|+++|||+||+.. +++.+|+.++++++|| |+++||. .||.|+ |++++.+++|+.++
T Consensus 113 ~~DK~~~k~~l~~~GVpv~p~~~~~v~~~~e~~~~a~~igy-PvvIKp~--~GgGG~---------Gv~iv~~~~eL~~a 180 (499)
T PRK08654 113 MGSKINAKKLMKKAGVPVLPGTEEGIEDIEEAKEIAEEIGY-PVIIKAS--AGGGGI---------GMRVVYSEEELEDA 180 (499)
T ss_pred hCCHHHHHHHHHHcCcCCCCCcCcCCCCHHHHHHHHHHhCC-CEEEEeC--CCCCCC---------eEEEeCCHHHHHHH
Confidence 36788899999999999998864 6899999999999999 9999996 444444 79999999999999
Q ss_pred HHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCC
Q psy12143 113 AGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDIT 192 (443)
Q Consensus 113 ~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~ 192 (443)
+++...... . ..+ ...++||+|+.+++|+.+.+..|.. |.++.++. .+- .+...+ .+++.. .|.
T Consensus 181 ~~~~~~~a~---~--~f~--~~~v~vE~~I~~~r~ieVqvl~d~~--G~vv~l~~---rec-siqrr~-qk~ie~--~Pa 244 (499)
T PRK08654 181 IESTQSIAQ---S--AFG--DSTVFIEKYLEKPRHIEIQILADKH--GNVIHLGD---REC-SIQRRH-QKLIEE--APS 244 (499)
T ss_pred HHHHHHHHH---H--hCC--CCeEEEEeCCCCCcEEEEEEEEcCC--CCEEEEee---ecc-ccccCc-cceEEE--CCC
Confidence 887653210 0 012 2469999999988999999999975 66555441 111 122222 123322 443
Q ss_pred CCCCHHH-------HHHHHHHcCC-chhHHHHHHHHHHHHHhhhhCCCeEEeeeceeE
Q psy12143 193 VGITKEQ-------ALKVADAVGL-KAKRDITAEMLIKMYALFISKDASLIEINPYAE 242 (443)
Q Consensus 193 ~~l~~~~-------a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~~~~~~lEINPl~v 242 (443)
..++++. |.++++.+|+ |.-.-++ ++.+.+...+||||.+.
T Consensus 245 ~~l~~~~~~~l~~~A~~l~~algy~g~gtVEf---------l~~~g~~yflEiNpRlq 293 (499)
T PRK08654 245 PIMTPELRERMGEAAVKAAKAINYENAGTVEF---------LYSNGNFYFLEMNTRLQ 293 (499)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCCceEEEE---------EEECCcEEEEEEECCCC
Confidence 3355533 5566667777 4211011 12234577899999874
No 19
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=99.31 E-value=2.7e-11 Score=123.33 Aligned_cols=162 Identities=20% Similarity=0.314 Sum_probs=110.5
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCC-CCccccccCccCcEEEeCCHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGG-RGKGAFKGGLKGGVKMVDTPEEAEEV 112 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~g-k~k~~~~~~~~GGV~l~~s~ee~~~a 112 (443)
..-++...|++|+++|||+|++..+++.+++.++++++|| |+|+||.. +| .|+ ||.++.|.+|+.++
T Consensus 95 ~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~g~-P~vvKp~~--~g~~g~---------Gv~~v~~~~el~~a 162 (352)
T TIGR01161 95 IIQDRLTQKQFLQKLGLPVPPFLVIKDEEELDAALQELGF-PVVLKART--GGYDGR---------GQYRIRNEADLPQA 162 (352)
T ss_pred HhcCHHHHHHHHHHcCCCCCCccEeCCHHHHHHHHHHcCC-CEEEEeCC--CCCCCC---------CEEEECCHHHHHHH
Confidence 3467888999999999999999999999999999999999 99999963 22 232 79999999999988
Q ss_pred HHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCC
Q psy12143 113 AGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDIT 192 (443)
Q Consensus 113 ~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~ 192 (443)
++++.. ..++||+|++++.|+++.+.++.. |-+..+. . +|.... +.+......|.
T Consensus 163 ~~~~~~---------------~~~lvEe~I~~~~E~sv~~~~~~~--G~~~~~~-~----~~~~~~---~g~~~~~~~p~ 217 (352)
T TIGR01161 163 AKELGD---------------RECIVEEFVPFERELSVIVARSAD--GETAFYP-V----VENIHQ---DGILRYVVAPA 217 (352)
T ss_pred HHhcCC---------------CcEEEEecCCCCeEEEEEEEEcCC--CCEEEEC-C----cccEEe---CCEEEEEECCC
Confidence 876411 369999999988999999888764 5444444 1 222221 22333334453
Q ss_pred CCCCHH-------HHHHHHHHcCC-chhHHHHHHHHHHHHHhhhh-C-CCeEEeeeceeEc
Q psy12143 193 VGITKE-------QALKVADAVGL-KAKRDITAEMLIKMYALFIS-K-DASLIEINPYAED 243 (443)
Q Consensus 193 ~~l~~~-------~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~-~-~~~~lEINPl~v~ 243 (443)
. ++++ .++++++.||+ |... .+++.. . ++..+||||.+-.
T Consensus 218 ~-~~~~~~~~~~~~a~~i~~~l~~~G~~~----------ve~~~~~dg~~~v~EinpR~~~ 267 (352)
T TIGR01161 218 A-VPDAIQARAEEIARRLMEELGYVGVLA----------VEMFVLPDGRLLINELAPRVHN 267 (352)
T ss_pred C-CCHHHHHHHHHHHHHHHHHcCceeEEE----------EEEEEeCCCcEEEEEecCCCCC
Confidence 2 4432 24445556665 4211 123332 2 3677899998753
No 20
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=99.31 E-value=1.1e-11 Score=125.51 Aligned_cols=111 Identities=25% Similarity=0.302 Sum_probs=95.7
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
..-|+.++|+||++||||++.|..+++.+++.++.++.|. |+|+|++.+++|| ||.+..+.+|+.++.
T Consensus 100 lE~SK~faK~fm~k~~IPta~y~~f~~~e~a~ayi~~~g~-piVVKadGLaaGK-----------GV~V~~~~eeA~~a~ 167 (428)
T COG0151 100 LEGSKAFAKDFMKKYGIPTAEYEVFTDPEEAKAYIDEKGA-PIVVKADGLAAGK-----------GVIVAMTLEEAEAAV 167 (428)
T ss_pred HHhhHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHcCC-CEEEecccccCCC-----------CeEEcCCHHHHHHHH
Confidence 5568899999999999999999999999999999999998 9999999998876 799999999999999
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEe
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLI 164 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~ 164 (443)
++++.... +|.....|+||+|+. |.|+++.+..|....-|+..
T Consensus 168 ~~~l~~~~-------fg~~g~~VVIEEfL~-GeE~S~~a~~DG~~v~p~p~ 210 (428)
T COG0151 168 DEMLEGNA-------FGSAGARVVIEEFLD-GEEFSLQAFVDGKTVIPMPT 210 (428)
T ss_pred HHHHhhcc-------ccCCCCcEEEEeccc-ceEEEEEEEEcCCeEEECcc
Confidence 99987531 232235699999999 99999999999876555443
No 21
>PLN02257 phosphoribosylamine--glycine ligase
Probab=99.30 E-value=2.8e-11 Score=126.59 Aligned_cols=110 Identities=27% Similarity=0.231 Sum_probs=87.5
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
..-++..+|++|+++|||||++..+++.+++.++++++|| |+|+||....+ || ||.++.|.+|+.+++
T Consensus 99 l~~dK~~~K~~l~~~GIptp~~~~~~~~~e~~~~~~~~g~-PvVVKp~~~~~--Gk---------GV~iv~~~~el~~a~ 166 (434)
T PLN02257 99 LEGSKNFMKDLCDKYKIPTAKYETFTDPAAAKKYIKEQGA-PIVVKADGLAA--GK---------GVVVAMTLEEAYEAV 166 (434)
T ss_pred HHcCHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcCC-CEEEEcCCCCC--CC---------CEEEECCHHHHHHHH
Confidence 3457889999999999999999999999999999999999 99999974433 33 799999999999999
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEE
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVL 163 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv 163 (443)
++++.... .+.....++||+|+. |.|+++.+.+|....-|++
T Consensus 167 ~~~~~~~~-------fg~~~~~vlIEefi~-G~E~Sv~~~~dG~~~~pl~ 208 (434)
T PLN02257 167 DSMLVKGA-------FGSAGSEVVVEEFLD-GEEASFFALVDGENAIPLE 208 (434)
T ss_pred HHHHhhhh-------ccCCCCeEEEEECCC-CCEEEEEEEECCCcEEEEE
Confidence 88764211 122235799999999 6699998888864333443
No 22
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=99.30 E-value=3.9e-11 Score=126.19 Aligned_cols=170 Identities=18% Similarity=0.300 Sum_probs=112.7
Q ss_pred CCCHHHHHHHHHHCCCCCCCee--ecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFG--VAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEV 112 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~--~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a 112 (443)
.-++...|++|+++|||+|++. .+++.+|+.++++++|| |+|+||... +.|+ ||.++.|++|+.++
T Consensus 113 ~~DK~~~r~~l~~~gip~pp~~~~~~~~~~e~~~~~~~ig~-PvvvKP~~g--~gs~---------Gv~~v~~~~el~~~ 180 (449)
T TIGR00514 113 MGDKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIAKRIGY-PVIIKATAG--GGGR---------GMRVVREPDELVKS 180 (449)
T ss_pred hCCHHHHHHHHHHCCCCCCCCcccCcCCHHHHHHHHHHhCC-CEEEEeCCC--CCCC---------ccEEECCHHHHHHH
Confidence 3578889999999999999874 77899999999999999 999999743 3233 79999999999999
Q ss_pred HHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCC
Q psy12143 113 AGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDIT 192 (443)
Q Consensus 113 ~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~ 192 (443)
++.+..... .. .+ ...++||+|+++++|+++.+..|.. |.++.++ .. +. .+...++ .++.. .|.
T Consensus 181 ~~~~~~~~~---~~--~~--~~~vlvEe~i~g~~e~~v~v~~d~~--g~~~~~~-~~--~~-~~~~~~~-~~~~~--~p~ 244 (449)
T TIGR00514 181 ISMTRAEAK---AA--FG--NDGVYIEKYIENPRHVEIQVLADKY--GNAIYLG-ER--DC-SIQRRHQ-KLLEE--APS 244 (449)
T ss_pred HHHHHHHHH---Hh--CC--CCCEEEEECCCCCeEEEEEEEEcCC--CCEEEEe-cc--cc-Cceeccc-ceEEE--CCC
Confidence 887654220 00 11 2579999999988999999999874 5555543 11 11 1111111 22222 333
Q ss_pred CCCCHH-------HHHHHHHHcCC-chhHHHHHHHHHHHHHhhh--hCCCeEEeeeceeE
Q psy12143 193 VGITKE-------QALKVADAVGL-KAKRDITAEMLIKMYALFI--SKDASLIEINPYAE 242 (443)
Q Consensus 193 ~~l~~~-------~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~--~~~~~~lEINPl~v 242 (443)
..++.+ .+.++++.+|+ |...- +++. +.....+||||.+-
T Consensus 245 ~~l~~~~~~~i~~~a~~~~~~lg~~G~~~v----------ef~~~~~g~~~viEiNpR~~ 294 (449)
T TIGR00514 245 PALTPELRRKMGDAAVKAAVSIGYRGAGTV----------EFLLDKNGEFYFMEMNTRIQ 294 (449)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCcceEEE----------EEEEeCCCCEEEEEEECCCC
Confidence 335553 24556666776 53221 1222 23467899999873
No 23
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=99.30 E-value=1.6e-12 Score=139.44 Aligned_cols=127 Identities=24% Similarity=0.372 Sum_probs=108.7
Q ss_pred cccCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHH
Q psy12143 32 RNLNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEE 111 (443)
Q Consensus 32 ~~~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~ 111 (443)
+...++++++++++++|||+++++ +..+.+|+..+++.+| |..++. ..|||+. |||.++.+..++++
T Consensus 467 ~~~~~~~~e~~~~l~~~gi~~~~~-~~~~~~ea~~~a~~~~------Kl~s~~-----i~hksev-~gv~l~~~~~~v~~ 533 (598)
T COG1042 467 GGTTLDEPEAKELLEAYGIPVPAT-IASTLDEAVHIAESIG------KLRSPD-----IDHKSEV-GGVMLNRTADAVEK 533 (598)
T ss_pred CccccCchhhhhHHHHhcCccccc-ccCCHHHHHHHHHHhh------hccCCc-----cchhhhc-cceeecCcHHHHHH
Confidence 445789999999999999999999 9999999999999886 665443 2466776 99999999999999
Q ss_pred HHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCC
Q psy12143 112 VAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDI 191 (443)
Q Consensus 112 a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p 191 (443)
++..++.+ | ..+.+++||+|.. .|+++++.+||.| ||++++| .||+.+|.++| .. +.++|
T Consensus 534 a~~~~~~~--------p--a~i~g~lvq~m~~--~E~~vgv~~dp~f-gp~i~~G-~Gg~~ve~l~d----~~--~~~~P 593 (598)
T COG1042 534 AADDILAR--------P--ARIAGVLVQTMAK--LELIVGVKNDPTF-GPLILFG-EGGIEVEVLKD----VV--VALPP 593 (598)
T ss_pred HHHhHhcc--------c--chhhhhhhHhhhh--ccceeeccCCCcc-hhHHHhc-CCceEEEeecc----ee--eccCC
Confidence 99998764 2 3478999999998 9999999999995 9999999 99999999984 33 45677
No 24
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=99.27 E-value=6.6e-11 Score=122.05 Aligned_cols=102 Identities=21% Similarity=0.246 Sum_probs=82.7
Q ss_pred CCCHHHHHHHH-HHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 35 NVHEHVSYTLL-KEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 35 ~L~e~~ak~lL-~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
.-+++..|++| +++|||+|++..++|.+++.++++++|| |+|+||.... .|+ ||.++.|.+|+.+++
T Consensus 111 ~~dK~~~k~~l~~~~gip~p~~~~~~s~~~l~~~~~~~g~-P~VvKP~~g~--~s~---------Gv~~v~~~~el~~~~ 178 (395)
T PRK09288 111 TMNREGIRRLAAEELGLPTSPYRFADSLEELRAAVEEIGY-PCVVKPVMSS--SGK---------GQSVVRSPEDIEKAW 178 (395)
T ss_pred HhCHHHHHHHHHHhCCCCCCCceEECCHHHHHHHHHhcCC-CEEEEeCCCc--CCC---------CeEEECCHHHHHHHH
Confidence 35677788988 4899999999999999999999999999 9999996332 232 799999999999999
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
+.++... .+. ...++||+|++++.|+.+.+.+|..
T Consensus 179 ~~~~~~~--------~~~-~~~~lvEefi~~~~E~sv~~~~~~~ 213 (395)
T PRK09288 179 EYAQEGG--------RGG-AGRVIVEEFIDFDYEITLLTVRAVD 213 (395)
T ss_pred HHHHhhc--------ccc-CCCEEEEEecCCCEEEEEEEEEcCC
Confidence 8875421 000 2469999999989999999998864
No 25
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=99.27 E-value=8e-11 Score=124.45 Aligned_cols=168 Identities=17% Similarity=0.225 Sum_probs=112.4
Q ss_pred CCHHHHHHHHHHCCCCCCCee--ecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFG--VAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~--~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
-++..+|++|+++|||+|++. .+++.+++.++++++|| |||+||. .+|.|+ ||+++.|++|+.+++
T Consensus 117 ~DK~~~r~~l~~~GIp~~p~~~~~v~~~~e~~~~~~~igy-PvvvKp~--~gggg~---------Gv~~v~~~~eL~~a~ 184 (467)
T PRK12833 117 GDKARARRTARRAGVPTVPGSDGVVASLDAALEVAARIGY-PLMIKAA--AGGGGR---------GIRVAHDAAQLAAEL 184 (467)
T ss_pred cCHHHHHHHHHHcCCCCCCCcCcCcCCHHHHHHHHHHhCC-CEEEEEC--CCCCCC---------eEEEECCHHHHHHHH
Confidence 578899999999999999885 88999999999999999 9999996 344343 799999999999998
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCCC
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITV 193 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~~ 193 (443)
+...... .. ..+ ...++||+|+++++|+.+.+..|.. +.+.++... ..+++. ...++.. .|..
T Consensus 185 ~~~~~~~---~~--~~~--~~~vlvEefi~~~~ei~v~v~~dg~--~~~~~~~~~-----~~~~r~-~~ki~e~--~p~~ 247 (467)
T PRK12833 185 PLAQREA---QA--AFG--DGGVYLERFIARARHIEVQILGDGE--RVVHLFERE-----CSLQRR-RQKILEE--APSP 247 (467)
T ss_pred HHHHHHH---HH--hcC--CCcEEEEecCCCCEEEEEEEEeCCC--cEEEEEEee-----cccccC-CccEEEE--CCCC
Confidence 7764322 00 012 2469999999988999999999875 344333211 112111 1233333 3433
Q ss_pred CCCHH-------HHHHHHHHcCC-chhHHHHHHHHHHHHHhhhh---CCCeEEeeeceeE
Q psy12143 194 GITKE-------QALKVADAVGL-KAKRDITAEMLIKMYALFIS---KDASLIEINPYAE 242 (443)
Q Consensus 194 ~l~~~-------~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~---~~~~~lEINPl~v 242 (443)
.++.+ .|.++++.+|+ |.-.- +++.+ .+..++||||.+.
T Consensus 248 ~l~~~~~~~l~~~a~~~~~alg~~G~~~v----------Ef~~~~~~g~~~~iEvNpR~~ 297 (467)
T PRK12833 248 SLTPAQRDALCASAVRLARQVGYRGAGTL----------EYLFDDARGEFYFIEMNTRIQ 297 (467)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCcCcceE----------EEEEecCCCCEEEEEEECCCC
Confidence 35543 34556666676 52111 12222 2467899999874
No 26
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.26 E-value=7.2e-11 Score=124.11 Aligned_cols=169 Identities=22% Similarity=0.311 Sum_probs=112.5
Q ss_pred CCHHHHHHHHHHCCCCCCCe--eecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPF--GVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~--~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
-+++..|++|+++|||+|++ ..+++.+++.++++++|| |+|+||.. ++.|+ ||.++.|.+|+.+++
T Consensus 114 ~DK~~~r~~l~~~gIp~pp~~~~~v~~~~~~~~~~~~~g~-PvvvKP~~--g~gs~---------Gv~iv~~~~el~~~~ 181 (451)
T PRK08591 114 GDKVTAKATMKKAGVPVVPGSDGPVDDEEEALAIAKEIGY-PVIIKATA--GGGGR---------GMRVVRTEAELEKAF 181 (451)
T ss_pred cCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcCC-CEEEEECC--CCCCc---------eEEEECCHHHHHHHH
Confidence 57888999999999999987 578899999999999999 99999963 33333 799999999999999
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCCC
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITV 193 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~~ 193 (443)
+++..... .. .+ ...++||+|+++++|+.+.+.+|.. |.++.++ ..+.. +.... .... ...|..
T Consensus 182 ~~~~~~~~---~~--~~--~~~vlvEe~i~g~~e~~v~v~~d~~--g~~~~~~---~~~~~-~~~~~-~~~~--~~~p~~ 245 (451)
T PRK08591 182 SMARAEAK---AA--FG--NPGVYMEKYLENPRHIEIQVLADGH--GNAIHLG---ERDCS-LQRRH-QKVL--EEAPSP 245 (451)
T ss_pred HHHHHHHH---Hh--cC--CCCEEEEeCCCCCcEEEEEEEEcCC--CCEEEEe---ccccc-ceecc-eeEE--EECCCC
Confidence 88654210 00 11 2469999999988899999999975 5655443 11111 11111 1122 223433
Q ss_pred CCCH-------HHHHHHHHHcCC-chhHHHHHHHHHHHHHhhhh--CCCeEEeeeceeE
Q psy12143 194 GITK-------EQALKVADAVGL-KAKRDITAEMLIKMYALFIS--KDASLIEINPYAE 242 (443)
Q Consensus 194 ~l~~-------~~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~--~~~~~lEINPl~v 242 (443)
.++. +.+.++++.+|+ |.-.- +++.+ .+..++||||.+-
T Consensus 246 ~l~~~~~~~l~~~a~~~~~~lg~~G~~~v----------Ef~~~~~g~~~viEINpR~~ 294 (451)
T PRK08591 246 AITEELRRKIGEAAVKAAKAIGYRGAGTI----------EFLYEKNGEFYFIEMNTRIQ 294 (451)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCceEEE----------EEEEcCCCCEEEEEEECCCC
Confidence 3554 235566677776 52111 22333 3467899999773
No 27
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=99.26 E-value=7.5e-11 Score=127.33 Aligned_cols=163 Identities=17% Similarity=0.155 Sum_probs=111.7
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCC-CCccccccCccCcEEEeCCHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGG-RGKGAFKGGLKGGVKMVDTPEEAEEV 112 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~g-k~k~~~~~~~~GGV~l~~s~ee~~~a 112 (443)
..-+++..|++|+++|||+|+|..+++.+++.++.+++|| |+|+||. .+| .|+ |+.++.|.+|+.++
T Consensus 118 i~~DK~~~K~~l~~~GIptp~~~~v~~~~el~~~~~~ig~-P~VvKP~--~ggs~g~---------Gv~~v~~~~eL~~a 185 (577)
T PLN02948 118 IIQDKYAQKVHFSKHGIPLPEFMEIDDLESAEKAGDLFGY-PLMLKSR--RLAYDGR---------GNAVAKTEEDLSSA 185 (577)
T ss_pred HhcCHHHHHHHHHHCCcCCCCeEEeCCHHHHHHHHHhcCC-cEEEEeC--CCCCCCC---------CeEEECCHHHHHHH
Confidence 3458888999999999999999999999999999999999 9999996 333 243 68889999999999
Q ss_pred HHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCC
Q psy12143 113 AGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDIT 192 (443)
Q Consensus 113 ~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~ 192 (443)
++.+... ...++||+|+++.+|+++.+.+|.. |.+..+. .+|.... +.++.....|.
T Consensus 186 ~~~~~~~-------------~~~vlvEefI~~~~EisV~v~r~~~--G~i~~~p-----~~E~~~~---~~~~~~~~~Pa 242 (577)
T PLN02948 186 VAALGGF-------------ERGLYAEKWAPFVKELAVMVARSRD--GSTRCYP-----VVETIHK---DNICHVVEAPA 242 (577)
T ss_pred HHHhhCC-------------CCcEEEEecCCCCeEEEEEEEECCC--CCEEEec-----CcccEEE---CCeeEEEEECC
Confidence 8876431 1368999999988999999999864 5544443 1444321 23333333454
Q ss_pred CCCCHHH-------HHHHHHHcCC-chhHHHHHHHHHHHHHhhhhC--CCeEEeeeceeE
Q psy12143 193 VGITKEQ-------ALKVADAVGL-KAKRDITAEMLIKMYALFISK--DASLIEINPYAE 242 (443)
Q Consensus 193 ~~l~~~~-------a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~~--~~~~lEINPl~v 242 (443)
. ++++. |.++++.|+. |.-. .++|... ++..+||||+.-
T Consensus 243 ~-l~~~~~~~~~~~A~~~~~aLg~~Gv~~----------vEffv~~dG~v~v~EInpRpg 291 (577)
T PLN02948 243 N-VPWKVAKLATDVAEKAVGSLEGAGVFG----------VELFLLKDGQILLNEVAPRPH 291 (577)
T ss_pred C-CCHHHHHHHHHHHHHHHHHhCCCeEEE----------EEEEEcCCCcEEEEEEeCCCC
Confidence 2 55532 3334444443 3111 0123332 457799999874
No 28
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=99.25 E-value=8.5e-11 Score=107.86 Aligned_cols=117 Identities=24% Similarity=0.360 Sum_probs=88.4
Q ss_pred HHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHHHhhchhhhh
Q psy12143 45 LKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDYLITK 124 (443)
Q Consensus 45 L~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~l~~~~~~~~ 124 (443)
|++.|||||+|..+.|.+|+.++++++|| |+|+|+. ..|.+|| |..+.++.+++.++++.+ .
T Consensus 1 l~~~gip~~~~~~i~~~~~l~~a~~~iG~-P~vlK~~-~~GYDGk---------Gq~~i~~~~dl~~a~~~~-~------ 62 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSLEDLEEAAESIGF-PAVLKTR-RGGYDGK---------GQFVIRSEEDLEKAWQEL-G------ 62 (172)
T ss_dssp HHHTT--B-EEEEESSHHHHHHHHHHHTS-SEEEEES-SSSCTTT---------TEEEESSGGGHHHHHHHT-T------
T ss_pred CcccCCCCCCeEEECCHHHHHHHHHHcCC-CEEEEcc-CcCcCCC---------ccEEECCHHHHHHHHHhc-C------
Confidence 68899999999999999999999999999 9999974 2344565 688889999999998876 1
Q ss_pred hcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCCCCCCHH
Q psy12143 125 QTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKE 198 (443)
Q Consensus 125 ~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~~~l~~~ 198 (443)
-..+++|+|++..+|+++-+.||.. |-+.++. -+|.... |.++...+.|.. ++..
T Consensus 63 --------~~~~ilE~~v~f~~EiSvivaR~~~--G~~~~yp-----~~en~~~---~~il~~s~~Pa~-i~~~ 117 (172)
T PF02222_consen 63 --------GGPCILEEFVPFDREISVIVARDQD--GEIRFYP-----PVENVHR---DGILHESIAPAR-ISDE 117 (172)
T ss_dssp --------TSCEEEEE---ESEEEEEEEEEETT--SEEEEEE-----EEEEEEE---TTEEEEEEESCS-S-HH
T ss_pred --------CCcEEEEeccCCcEEEEEEEEEcCC--CCEEEEc-----CceEEEE---CCEEEEEECCCC-CCHH
Confidence 1469999999999999999999985 7777776 4666543 577777778854 5554
No 29
>PRK05586 biotin carboxylase; Validated
Probab=99.25 E-value=1e-10 Score=122.93 Aligned_cols=169 Identities=23% Similarity=0.326 Sum_probs=113.0
Q ss_pred CCCHHHHHHHHHHCCCCCCCe--eecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPF--GVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEV 112 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~--~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a 112 (443)
.-++...|++|+++|||+|++ ..+.+.+|+.++++++|| |+|+||. .+|.|+ ||.++.|++|+.++
T Consensus 113 ~~DK~~~k~~l~~~GIpvp~~~~~~~~~~~e~~~~~~~igy-PvvvKP~--~gggg~---------Gv~~v~~~~el~~a 180 (447)
T PRK05586 113 MGNKSNAREIMIKAGVPVVPGSEGEIENEEEALEIAKEIGY-PVMVKAS--AGGGGR---------GIRIVRSEEELIKA 180 (447)
T ss_pred hCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCC-CEEEEEC--CCCCCC---------eeEEECCHHHHHHH
Confidence 467888999999999999998 467899999999999999 9999996 344343 79999999999999
Q ss_pred HHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCC
Q psy12143 113 AGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDIT 192 (443)
Q Consensus 113 ~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~ 192 (443)
+++...... . ..+ ...++||+|+++.+|+.+.+.+|.. |-++.++ . .+. .....+ ..+... .|.
T Consensus 181 ~~~~~~~~~---~--~~~--~~~vivEe~i~g~~ei~v~v~~d~~--G~~~~~~-~--~~~-~~~~~~-~~~~~~--~p~ 244 (447)
T PRK05586 181 FNTAKSEAK---A--AFG--DDSMYIEKFIENPKHIEFQILGDNY--GNVVHLG-E--RDC-SLQRRN-QKVLEE--APS 244 (447)
T ss_pred HHHHHHHHH---H--hcC--CCeEEEEecCCCCeEEEEEEEECCC--CCEEEEe-c--eec-ceEecc-cceEEE--cCC
Confidence 887654221 0 011 1469999999977999999999874 6655554 1 110 111111 123322 343
Q ss_pred CCCCHH-------HHHHHHHHcCC-chhHHHHHHHHHHHHHhhhh--CCCeEEeeecee
Q psy12143 193 VGITKE-------QALKVADAVGL-KAKRDITAEMLIKMYALFIS--KDASLIEINPYA 241 (443)
Q Consensus 193 ~~l~~~-------~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~--~~~~~lEINPl~ 241 (443)
..++.+ .|.++++.||+ |.-. .+++.+ .+...+||||.+
T Consensus 245 ~~l~~~~~~~l~~~a~~i~~aLg~~g~~~----------vEf~~~~~g~~~~iEvNpR~ 293 (447)
T PRK05586 245 PVMTEELRKKMGEIAVKAAKAVNYKNAGT----------IEFLLDKDGNFYFMEMNTRI 293 (447)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCcceeE----------EEEEEcCCCCEEEEEEECCC
Confidence 335553 35566677776 4211 123333 346789999987
No 30
>PLN02735 carbamoyl-phosphate synthase
Probab=99.24 E-value=7.1e-11 Score=135.81 Aligned_cols=165 Identities=21% Similarity=0.348 Sum_probs=115.0
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcC-CCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLN-IKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg-~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
.-+....|++|+++|||+|++..+++.+++.++++++| | |+||||....||+ |+.++.|.+|+.+++
T Consensus 142 ~~DK~~~k~~l~~~GIpvp~~~~v~s~eea~~~~~~iG~y-PvVVKP~~~~GG~-----------Gv~iv~n~eEL~~a~ 209 (1102)
T PLN02735 142 AEDRELFKQAMEKIGLKTPPSGIATTLDECFEIAEDIGEF-PLIIRPAFTLGGT-----------GGGIAYNKEEFETIC 209 (1102)
T ss_pred hcCHHHHHHHHHHCCCCCCCeeEeCCHHHHHHHHHHhCCC-CEEEEeCCCCCCC-----------ceEEECCHHHHHHHH
Confidence 46677899999999999999999999999999999999 8 9999997544443 677899999999999
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhccc---ccCCCeEEEEecC
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVA---AENPSAILYEPVD 190 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~---~~~~d~v~~~~l~ 190 (443)
++.+... ....++||+++.+++|+.+.+.+|.. |.++.++ .+|.++ -+..+.+ .+.
T Consensus 210 ~~a~~~s-----------~~~~VLVEe~I~G~kE~ev~Vl~D~~--g~~i~v~-----~ie~~dp~gvh~G~s~---~va 268 (1102)
T PLN02735 210 KAGLAAS-----------ITSQVLVEKSLLGWKEYELEVMRDLA--DNVVIIC-----SIENIDPMGVHTGDSI---TVA 268 (1102)
T ss_pred HHHHhcC-----------CCCeEEEEEecCCCeEEEEEEEEcCC--CCEEEEe-----eEEEEcCCccccCCEE---EEE
Confidence 8765321 13579999999977999999999975 4444433 123221 1122332 234
Q ss_pred CCCCCCHH-------HHHHHHHHcCC--chhHHHHHHHHHHHHHhhhh---CCCeEEeeeceeE
Q psy12143 191 ITVGITKE-------QALKVADAVGL--KAKRDITAEMLIKMYALFIS---KDASLIEINPYAE 242 (443)
Q Consensus 191 p~~~l~~~-------~a~~~l~~lg~--g~d~~~l~~~l~~l~~l~~~---~~~~~lEINPl~v 242 (443)
|.+.++.. .|.++++.||+ |...- +++.+ .+...+||||.+-
T Consensus 269 Pa~tL~~~~~q~l~~~A~ki~~aLgi~~G~~nV----------qf~l~~~~g~~~ViEVNPR~s 322 (1102)
T PLN02735 269 PAQTLTDKEYQRLRDYSVAIIREIGVECGGSNV----------QFAVNPVDGEVMIIEMNPRVS 322 (1102)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHhCCCcCceEE----------EEEEECCCCcEEEEEecCCCC
Confidence 54446653 24555666675 43221 23332 3567899999874
No 31
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.24 E-value=7.5e-11 Score=135.63 Aligned_cols=164 Identities=20% Similarity=0.286 Sum_probs=114.6
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGK 115 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~ 115 (443)
-+....|++|+++|+|+|++..+++.+|+.++++++|| |+||||.... .|+ |+.++.|++|+.+++++
T Consensus 126 ~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~igy-PvIVKP~~g~--gg~---------Gv~iv~~~eeL~~~~~~ 193 (1050)
T TIGR01369 126 EDRELFREAMKEIGEPVPESEIAHSVEEALAAAKEIGY-PVIVRPAFTL--GGT---------GGGIAYNREELKEIAER 193 (1050)
T ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHhCC-CeEEECCCCC--CCC---------CeEEECCHHHHHHHHHH
Confidence 56778899999999999999999999999999999999 9999997332 332 68889999999998887
Q ss_pred HhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhccc---ccCCCeEEEEecCCC
Q psy12143 116 MIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVA---AENPSAILYEPVDIT 192 (443)
Q Consensus 116 l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~---~~~~d~v~~~~l~p~ 192 (443)
.+... ....++||+|+++.+|+++.+.+|.. |-++.++. +|.+. -+..+.+ .+.|.
T Consensus 194 ~~~~s-----------~~~~vlVEe~I~G~~Eiev~v~rd~~--g~~~~~~~-----~e~~~p~gvh~g~~i---~v~Pa 252 (1050)
T TIGR01369 194 ALSAS-----------PINQVLVEKSLAGWKEIEYEVMRDSN--DNCITVCN-----MENFDPMGVHTGDSI---VVAPS 252 (1050)
T ss_pred HHhcC-----------CCCcEEEEEcccCceEEEEEEEEeCC--CCEEEEee-----ceeccCcceecCceE---EEecC
Confidence 76431 12579999999987999999999975 55555541 33321 1111222 23554
Q ss_pred CCCCHH-------HHHHHHHHcCC-chhHHHHHHHHHHHHHhhhh---CCCeEEeeeceeE
Q psy12143 193 VGITKE-------QALKVADAVGL-KAKRDITAEMLIKMYALFIS---KDASLIEINPYAE 242 (443)
Q Consensus 193 ~~l~~~-------~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~---~~~~~lEINPl~v 242 (443)
+.++.. .|.++++.||+ |...- +++.+ .+...+||||.+-
T Consensus 253 ~tl~~~~~~~l~~~a~~i~~~Lg~~G~~~V----------ef~l~~~~g~~~viEiNPR~~ 303 (1050)
T TIGR01369 253 QTLTDKEYQMLRDASIKIIRELGIEGGCNV----------QFALNPDSGRYYVIEVNPRVS 303 (1050)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCcceeEE----------EEEEECCCCcEEEEEeecCcC
Confidence 435542 45567777787 53221 22332 2456889998763
No 32
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=99.23 E-value=1.4e-10 Score=122.78 Aligned_cols=170 Identities=20% Similarity=0.312 Sum_probs=113.8
Q ss_pred CCCHHHHHHHHHHCCCCCCCeee--cCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGV--AKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEV 112 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~--v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a 112 (443)
.-++...|++|.++|||+|++.. +++.+++.++++++|| |+|+||. .+|.|+ ||.++.|++|+.++
T Consensus 112 ~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~~~~~igy-PvvvKp~--~ggGg~---------Gv~~v~~~~eL~~a 179 (472)
T PRK07178 112 MGDKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAERIGY-PVMLKAT--SGGGGR---------GIRRCNSREELEQN 179 (472)
T ss_pred hcCHHHHHHHHHHCCCCCCCCcCcCCCCHHHHHHHHHHcCC-cEEEEeC--CCCCCC---------CceEeCCHHHHHHH
Confidence 35688899999999999998864 7899999999999999 9999996 334343 79999999999999
Q ss_pred HHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCC
Q psy12143 113 AGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDIT 192 (443)
Q Consensus 113 ~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~ 192 (443)
+++...... +. .+ ...++||+|+.+++|+.+.+..|.. |-++.+. .. + ..+...+. .... ..|.
T Consensus 180 ~~~~~~~~~---~~--~~--~~~v~iE~~i~~~~eiev~v~~d~~--G~~v~~~-er--~-~s~~~~~~-~~~e--~~P~ 243 (472)
T PRK07178 180 FPRVISEAT---KA--FG--SAEVFLEKCIVNPKHIEVQILADSH--GNVVHLF-ER--D-CSIQRRNQ-KLIE--IAPS 243 (472)
T ss_pred HHHHHHHHH---Hh--cC--CCCEEEEEcCCCCeEEEEEEEEECC--CCEEEEE-cc--c-cceEecCc-ceEE--ECCC
Confidence 887654321 10 11 2469999999889999999999975 4443332 11 1 11221111 2222 2443
Q ss_pred CCCCHH-------HHHHHHHHcCC-chhHHHHHHHHHHHHHhhh--hCCCeEEeeeceeE
Q psy12143 193 VGITKE-------QALKVADAVGL-KAKRDITAEMLIKMYALFI--SKDASLIEINPYAE 242 (443)
Q Consensus 193 ~~l~~~-------~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~--~~~~~~lEINPl~v 242 (443)
..++++ .|.++++.||+ |.-. .+++. +.+...+||||.+-
T Consensus 244 ~~l~~~~~~~i~~~a~~~~~aLg~~g~~~----------vEf~~d~~g~~y~iEiNpRl~ 293 (472)
T PRK07178 244 PQLTPEQRAYIGDLAVRAAKAVGYENAGT----------VEFLLDADGEVYFMEMNTRVQ 293 (472)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCceeE----------EEEEEeCCCCEEEEEEeCCcC
Confidence 336653 45667777777 4211 12333 23567899999873
No 33
>PLN02735 carbamoyl-phosphate synthase
Probab=99.21 E-value=1.5e-10 Score=133.16 Aligned_cols=169 Identities=19% Similarity=0.203 Sum_probs=114.9
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
..-+....|++|+++|||+|++..+++.+|+.++++++|| ||++||... +.|+ |+.++.|.+|+.+++
T Consensus 699 i~~DK~~~k~~l~~~GIp~p~~~~v~s~eea~~~a~~iGy-PvvVKP~~g--~gG~---------G~~iV~~~eeL~~al 766 (1102)
T PLN02735 699 AAEDRERFNAILNELKIEQPKGGIARSEADALAIAKRIGY-PVVVRPSYV--LGGR---------AMEIVYSDDKLKTYL 766 (1102)
T ss_pred HhcCHHHHHHHHHHcCCCCCCeeEeCCHHHHHHHHHhcCC-CeEEEeCCC--CCCC---------cEEEECCHHHHHHHH
Confidence 4467888999999999999999999999999999999999 999999743 3333 788999999999998
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCCC
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITV 193 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~~ 193 (443)
++.+... + ...++||+|+++++|+.+.+.+|.. |-+++.+..- .+|...-+..|..+.+ |..
T Consensus 767 ~~a~~~~---------~--~~~vlVEefI~~g~Ei~V~vl~D~~--G~vv~~~i~e--~~~~~gvhsGds~~~~---P~~ 828 (1102)
T PLN02735 767 ETAVEVD---------P--ERPVLVDKYLSDATEIDVDALADSE--GNVVIGGIME--HIEQAGVHSGDSACSL---PTQ 828 (1102)
T ss_pred HHHHHhc---------C--CCCEEEEEecCCcEEEEEEEEECCC--CCEEEecceE--eeeccCccCCCccEEe---cCC
Confidence 8875421 1 1359999999889999999999975 4444433110 1111111122333333 322
Q ss_pred CCCHHH-------HHHHHHHcCC-chhHHHHHHHHHHHHHhhh--hCCCeEEeeeceeE
Q psy12143 194 GITKEQ-------ALKVADAVGL-KAKRDITAEMLIKMYALFI--SKDASLIEINPYAE 242 (443)
Q Consensus 194 ~l~~~~-------a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~--~~~~~~lEINPl~v 242 (443)
.++++. ++++.+.||+ |...- +++. +.+...+||||..-
T Consensus 829 ~L~~e~~~~i~~~a~ki~~~L~~~G~~~v----------qf~v~~dg~~yviEiNpR~s 877 (1102)
T PLN02735 829 TIPSSCLATIRDWTTKLAKRLNVCGLMNC----------QYAITPSGEVYIIEANPRAS 877 (1102)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCcceeeE----------EEEEcCCCcEEEEEEeCCCC
Confidence 355432 5556666676 53221 2333 23577899999873
No 34
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=99.21 E-value=2.3e-10 Score=117.42 Aligned_cols=102 Identities=22% Similarity=0.219 Sum_probs=81.1
Q ss_pred CCCHHHHHHHH-HHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 35 NVHEHVSYTLL-KEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 35 ~L~e~~ak~lL-~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
..+++..|+++ +++|||+|++..+++.+++.++++++|| |+|+||.. ++.|+ ||.++.|.+|+.+++
T Consensus 98 ~~dK~~~~~~~~~~~gip~p~~~~~~~~~~~~~~~~~~g~-P~VvKP~~--g~~s~---------gv~~v~~~~el~~~~ 165 (380)
T TIGR01142 98 TMNREGIRRLAAEELGLPTSRYMFADSLDELREAVEKIGY-PCVVKPVM--SSSGK---------GQSVVRGPEDIEKAW 165 (380)
T ss_pred hhCHHHHHHHHHHHCCCCCCCceEeCCHHHHHHHHHHcCC-CEEEEECC--CcCCC---------CeEEECCHHHHHHHH
Confidence 35777788875 8999999999999999999999999999 99999963 33333 799999999999999
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
+.+.... .. ....++||+|++++.|+.+.+.++..
T Consensus 166 ~~~~~~~--------~~-~~~~~ivEe~i~~~~E~sv~~~~~~~ 200 (380)
T TIGR01142 166 EYAQEGA--------RG-GAGRVIVEEFIDFDYEITLLTVRHVD 200 (380)
T ss_pred HHHHhhc--------cC-CCCCEEEEEecCCCEEEEEEEEEcCC
Confidence 8875321 00 12469999999988899988887643
No 35
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.19 E-value=2.2e-10 Score=115.86 Aligned_cols=167 Identities=22% Similarity=0.317 Sum_probs=118.1
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGK 115 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~ 115 (443)
-+....|++|++.|+|+| ..++++.+++.+.++.+|| ||++||....||. |..+..|.+|+.+....
T Consensus 115 eDr~~fke~m~eigi~~P-~~~~~~~~e~~~~~~~ig~-PvIVrP~~~lGG~-----------G~~i~~n~eel~~~~~~ 181 (400)
T COG0458 115 EDKKLFKEAMREIGIPVP-SRIAHSVEEADEIADEIGY-PVIVKPSFGLGGS-----------GGGIAYNEEELEEIIEE 181 (400)
T ss_pred hhHHHHHHHHHHcCCCCC-ccccccHHHHhhhHhhcCC-CEEEecCcCCCCC-----------ceeEEeCHHHHHHHHHh
Confidence 456678999999999999 7789999999999999999 9999997544443 55678999999988887
Q ss_pred HhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCCCCC
Q psy12143 116 MIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGI 195 (443)
Q Consensus 116 l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~~~l 195 (443)
.+... +++.+|+|+++.++.|+...+.+|... -+++++. .+-. +...-|..|++. +.|.+.+
T Consensus 182 ~l~~s-----------~~~~vl~eesi~G~ke~e~ev~rd~~~-n~ivvc~-men~--dp~gvhtgdsi~---vapaqtl 243 (400)
T COG0458 182 GLRAS-----------PVEEVLIEESIIGWKEFEYEVVRDGKD-NCIVVCN-MENL--DPMGVHTGDSIT---VAPAQTL 243 (400)
T ss_pred ccccC-----------ccccceeeeeecCceEEEEEEEEeCCC-CEEEEEe-CCcc--ccccccccceee---ecccccc
Confidence 76542 257899999999999999999999973 4544444 5433 233333445543 4565544
Q ss_pred CHH-------HHHHHHHHcCC-chhHHHHHHHHHHHHHhhhhC---CCeEEeeeceeEc
Q psy12143 196 TKE-------QALKVADAVGL-KAKRDITAEMLIKMYALFISK---DASLIEINPYAED 243 (443)
Q Consensus 196 ~~~-------~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~~---~~~~lEINPl~v~ 243 (443)
+.. .+.+.++.+|. |....++ ..+. +...+|+||.+-.
T Consensus 244 ~d~eyq~~r~~~~~iir~igi~G~~niQ~----------av~~~~~~~~viEvNpRvSr 292 (400)
T COG0458 244 TDKEYQMLRDAAIKVIREIGIEGGCNIQF----------AVDPGGGELYVIEINPRVSR 292 (400)
T ss_pred ccHHHHHHHHHHHHHHHHhcccCCCceeE----------EEcCCCceEEEEEecCCcCc
Confidence 432 23345567776 5444333 2333 4567999998643
No 36
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=99.18 E-value=7.9e-10 Score=115.27 Aligned_cols=102 Identities=24% Similarity=0.282 Sum_probs=84.5
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCe-EEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKD-IVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~P-vVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
.-+++..|++|+++|||+|++..+++.+|+.++++++|| | +|+||....+|+ ||.++.|.+|+.+++
T Consensus 102 ~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~~~~~~g~-P~~VvKp~~~~gg~-----------Gv~~v~~~~el~~~~ 169 (423)
T TIGR00877 102 EGSKAFAKDFMKRYGIPTAEYEVFTDPEEALSYIQEKGA-PAIVVKADGLAAGK-----------GVIVAKTNEEAIKAV 169 (423)
T ss_pred HCCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhcCC-CeEEEEECCCCCCC-----------CEEEECCHHHHHHHH
Confidence 357888999999999999999999999999999999999 9 999997443332 799999999999999
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
++++... .+.....++||+|++ |.|+++.+..|..
T Consensus 170 ~~~~~~~--------~g~~~~~~lvEe~i~-G~E~sv~~~~dg~ 204 (423)
T TIGR00877 170 EEILEQK--------FGDAGERVVIEEFLD-GEEVSLLAFVDGK 204 (423)
T ss_pred HHHHHHh--------cCCCCCeEEEEECcc-CceEEEEEEEcCC
Confidence 8886531 111135799999999 6899999998863
No 37
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.17 E-value=2.6e-10 Score=131.45 Aligned_cols=164 Identities=21% Similarity=0.344 Sum_probs=113.1
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGK 115 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~ 115 (443)
.+....|++|+++|||+|++..+++.+|+.++++++|| |+|+||.... .|+ |+.++.|++|+.+++++
T Consensus 127 ~DK~~~k~~l~~~Gipvp~~~~v~s~~e~~~~~~~ig~-PvVVKP~~g~--gg~---------Gv~iv~~~eeL~~a~~~ 194 (1066)
T PRK05294 127 EDRELFKEAMKKIGLPVPRSGIAHSMEEALEVAEEIGY-PVIIRPSFTL--GGT---------GGGIAYNEEELEEIVER 194 (1066)
T ss_pred cCHHHHHHHHHHCCcCCCCeeeeCCHHHHHHHHHHcCC-CeEEEcCCCC--CCC---------CeEEECCHHHHHHHHHH
Confidence 57778899999999999999999999999999999999 9999996332 232 68889999999999887
Q ss_pred HhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhccc---ccCCCeEEEEecCCC
Q psy12143 116 MIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVA---AENPSAILYEPVDIT 192 (443)
Q Consensus 116 l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~---~~~~d~v~~~~l~p~ 192 (443)
.+... ....++||+|+++..|+.+.+.+|.. |-++.++. +|.+. -+..+. ..+.|.
T Consensus 195 ~~~~s-----------~~~~vlvEe~I~G~~Eisv~v~rd~~--g~~~~~~~-----~e~~dp~gih~g~~---~~~~Pa 253 (1066)
T PRK05294 195 GLDLS-----------PVTEVLIEESLLGWKEYEYEVMRDKN--DNCIIVCS-----IENIDPMGVHTGDS---ITVAPA 253 (1066)
T ss_pred HHhhC-----------CCCeEEEEEcccCceEEEEEEEEcCC--CCEEEEee-----eeeccccceecCCe---EEEeCC
Confidence 65321 12579999999977999999999975 55554441 23221 111122 123454
Q ss_pred CCCCH-------HHHHHHHHHcCC--chhHHHHHHHHHHHHHhhhh---CCCeEEeeeceeE
Q psy12143 193 VGITK-------EQALKVADAVGL--KAKRDITAEMLIKMYALFIS---KDASLIEINPYAE 242 (443)
Q Consensus 193 ~~l~~-------~~a~~~l~~lg~--g~d~~~l~~~l~~l~~l~~~---~~~~~lEINPl~v 242 (443)
..++. +.|.++++.||+ |... .+++.+ .+...+||||.+-
T Consensus 254 ~~l~~~~~~~l~~~a~ki~~aLg~~~G~~~----------vef~~~~~~g~~~viEiNPR~~ 305 (1066)
T PRK05294 254 QTLTDKEYQMLRDASIAIIREIGVETGGCN----------VQFALNPKDGRYIVIEMNPRVS 305 (1066)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCccCceE----------EEEEEECCCCcEEEEEeecCCC
Confidence 33554 335566666665 4221 123333 2467899999863
No 38
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=99.17 E-value=2.4e-10 Score=119.36 Aligned_cols=104 Identities=21% Similarity=0.258 Sum_probs=86.2
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
..-++..+|++|+++|||+|++..+++.+|+.+++++++| |+|+||....+|| ||.++.|.+|+.+++
T Consensus 105 le~dK~~~K~~l~~~gIpt~~~~~~~~~~ea~~~~~~~~~-PvVVKp~~~~~gk-----------GV~vv~~~eel~~a~ 172 (426)
T PRK13789 105 VEGSKHFAKSLMKEAKIPTASYKTFTEYSSSLSYLESEML-PIVIKADGLAAGK-----------GVTVATEKKMAKRAL 172 (426)
T ss_pred HHcCHHHHHHHHHHcCCCCCCeEeeCCHHHHHHHHHhcCC-CEEEEeCCCCCCC-----------cEEEECCHHHHHHHH
Confidence 3458889999999999999999999999999999999999 9999998554433 799999999999999
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
++++.... .+.....++||+|+. |.|+++.+..|..
T Consensus 173 ~~~~~~~~-------~g~~~~~vlIEEfl~-G~E~Sv~~~~dg~ 208 (426)
T PRK13789 173 KEIFKDKK-------FGQSGNQVVIEEFME-GQEASIFAISDGD 208 (426)
T ss_pred HHHHhhcc-------ccCCCCeEEEEECcC-CeEEEEEEEECCC
Confidence 99874321 122224799999999 6899999998753
No 39
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=99.15 E-value=3.3e-10 Score=117.94 Aligned_cols=108 Identities=23% Similarity=0.331 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHCCCCCCCeee--cCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHH
Q psy12143 37 HEHVSYTLLKEGGIPVPPFGV--AKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAG 114 (443)
Q Consensus 37 ~e~~ak~lL~~~GIpv~~~~~--v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~ 114 (443)
++..+|++++++|+|++|+.. +.+.+|+.+.++++|| ||+|||. .||.|+ |++++++.+++.+++.
T Consensus 115 dK~~ar~~~~~aGVP~vpgs~~~~~~~ee~~~~a~~iGy-PVivKa~--~GgGg~---------G~r~v~~~~el~~a~~ 182 (449)
T COG0439 115 DKITARRLMAKAGVPVVPGSDGAVADNEEALAIAEEIGY-PVIVKAA--AGGGGR---------GMRVVRNEEELEAAFE 182 (449)
T ss_pred hHHHHHHHHHHcCCCcCCCCCCCcCCHHHHHHHHHHcCC-CEEEEEC--CCCCcc---------cEEEECCHHHHHHHHH
Confidence 577899999999999999873 5677899999999999 9999996 333343 8999999999999999
Q ss_pred HHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEee
Q psy12143 115 KMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIA 165 (443)
Q Consensus 115 ~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~ 165 (443)
.+.+... ...+. ..+++|+|+...+-+.+.+..|.. |-++=.
T Consensus 183 ~~~~ea~-----~~fg~--~~v~iEk~i~~~rhievqv~gD~~--g~~i~l 224 (449)
T COG0439 183 AARGEAE-----AAFGN--PRVYLEKFIEGPRHIEVQVLGDGH--GNVIHL 224 (449)
T ss_pred HHHHHHH-----HhcCC--CcEEeeeeccCCceEEEEEEEcCc--ccEEEE
Confidence 8876531 11232 459999999988888999999986 555543
No 40
>PRK08462 biotin carboxylase; Validated
Probab=99.15 E-value=7.6e-10 Score=116.25 Aligned_cols=111 Identities=22% Similarity=0.353 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHCCCCCCCee--ecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFG--VAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEV 112 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~--~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a 112 (443)
.-++...|++|+++|||+|++. .+++.+++.++++++|| |+++||.. ++.|+ ||.++.|++|+.++
T Consensus 115 ~~dK~~~r~~l~~~gIp~pp~~~~~~~~~~~~~~~~~~~g~-PvvvKP~~--g~gs~---------Gv~~v~~~~eL~~~ 182 (445)
T PRK08462 115 MSDKSKAKEVMKRAGVPVIPGSDGALKSYEEAKKIAKEIGY-PVILKAAA--GGGGR---------GMRVVEDESDLENL 182 (445)
T ss_pred hCCHHHHHHHHHHCCCCCCCCcccccCCHHHHHHHHHHcCC-CEEEEeCC--CCCCC---------CeEEECCHHHHHHH
Confidence 3578889999999999999864 67899999999999999 99999963 33333 79999999999998
Q ss_pred HHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeec
Q psy12143 113 AGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIAS 166 (443)
Q Consensus 113 ~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g 166 (443)
+.+...... .. .+ ...++||+|+++++|+.+.+..|.. |-++.++
T Consensus 183 ~~~~~~~~~---~~--~~--~~~vlvEe~i~g~~e~~v~v~~~~~--g~~~~~g 227 (445)
T PRK08462 183 YLAAESEAL---SA--FG--DGTMYMEKFINNPRHIEVQILGDKH--GNVIHVG 227 (445)
T ss_pred HHHHHHHHH---hc--cC--CCcEEEeccCCCCeEEEEEEEECCC--CCEEEEE
Confidence 876533210 00 11 1369999999988999999998864 5555443
No 41
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=99.13 E-value=5.7e-10 Score=129.12 Aligned_cols=111 Identities=22% Similarity=0.273 Sum_probs=87.6
Q ss_pred CCCHHHHHHHHHHCCCCCCC-eeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPP-FGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~-~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
.-+++.+|++|+++|||+++ +.+++|.+|+.++++++|| |||+||.. ++.|+ ||.++.|.+|+.+++
T Consensus 112 ~~DK~~ar~ll~~~GVPt~p~~~lv~s~dea~~~a~~igy-PvVVKP~~--ggGG~---------GV~iv~~~eEL~~a~ 179 (1201)
T TIGR02712 112 FGLKHTARELAEAAGVPLLPGTGLLSSLDEALEAAKEIGY-PVMLKSTA--GGGGI---------GMQKCDSAAELAEAF 179 (1201)
T ss_pred hcCHHHHHHHHHHCCCCCCCceeecCCHHHHHHHHHhcCC-eEEEEECC--CCCCC---------CEEEECCHHHHHHHH
Confidence 45788999999999999976 6678999999999999999 99999973 33333 799999999999998
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeec
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIAS 166 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g 166 (443)
+++.... +.. .+ ..+++||+|+++++|+.+.+..|.. |-++.++
T Consensus 180 ~~~~~~~---~~~--f~--~~~vlVEefI~g~~eveV~v~~Dg~--g~vv~lg 223 (1201)
T TIGR02712 180 ETVKRLG---ESF--FG--DAGVFLERFVENARHVEVQIFGDGK--GKVVALG 223 (1201)
T ss_pred HHHHHHH---HHh--cC--CCcEEEEecCCCCEEEEEEEEECCC--CeEEEee
Confidence 8775421 000 12 2469999999988999999999975 5665553
No 42
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=99.12 E-value=4.5e-09 Score=104.61 Aligned_cols=98 Identities=18% Similarity=0.255 Sum_probs=81.8
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
...++...|++|+++|||+|++..+.+.+++..+++++|| |+|+||.... .|+ ||.++.+.+++.+++
T Consensus 95 ~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~~~~~~~~-P~ivKP~~g~--~s~---------Gv~~v~~~~el~~~~ 162 (304)
T PRK01372 95 LAMDKLRTKLVWQAAGLPTPPWIVLTREEDLLAAIDKLGL-PLVVKPAREG--SSV---------GVSKVKEEDELQAAL 162 (304)
T ss_pred HHhCHHHHHHHHHHCCCCCCCEEEEeCcchHHHHHhhcCC-CEEEeeCCCC--CCC---------CEEEeCCHHHHHHHH
Confidence 3468888999999999999999999999998889999999 9999997433 232 788899999999888
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
+++... ...++||+|++ |.|+++.+..|..
T Consensus 163 ~~~~~~-------------~~~~lvEe~i~-G~E~~v~vi~~~~ 192 (304)
T PRK01372 163 ELAFKY-------------DDEVLVEKYIK-GRELTVAVLGGKA 192 (304)
T ss_pred HHHHhc-------------CCcEEEEcccC-CEEEEEEEECCCc
Confidence 776321 24699999999 8999999998764
No 43
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=99.11 E-value=6.5e-10 Score=110.73 Aligned_cols=94 Identities=16% Similarity=0.222 Sum_probs=75.0
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
...++..+|++|+++|||||++..+++.. ...+.+|| |+|+||. .+|.++ ||.++.|.+|+.+++
T Consensus 95 l~~DK~~~k~~l~~~gIptp~~~~~~~~~---~~~~~~~~-P~vVKP~--~ggss~---------Gv~~v~~~~eL~~a~ 159 (296)
T PRK14569 95 ITMDKMISKEILMHHRMPTPMAKFLTDKL---VAEDEISF-PVAVKPS--SGGSSI---------ATFKVKSIQELKHAY 159 (296)
T ss_pred HHHCHHHHHHHHHHCCCCCCCeEEEchhh---hhHhhcCC-CEEEEeC--CCCCCc---------CeEEcCCHHHHHHHH
Confidence 34788999999999999999998876432 23578999 9999996 444443 788899999999888
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
+++.. ...++||+|++ |+|+++++..|..
T Consensus 160 ~~~~~--------------~~~~lvEefI~-G~E~tv~vl~~~~ 188 (296)
T PRK14569 160 EEASK--------------YGEVMIEQWVT-GKEITVAIVNDEV 188 (296)
T ss_pred HHHHh--------------cCCEEEEcccc-cEEEEEEEECCcC
Confidence 77531 13589999998 7999999997764
No 44
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=99.10 E-value=1.2e-09 Score=114.71 Aligned_cols=111 Identities=17% Similarity=0.216 Sum_probs=84.9
Q ss_pred cCCCHHHHHHHHHHCCCCCCCe--eecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPF--GVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEE 111 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~--~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~ 111 (443)
..-+++..|++|+++|||+|++ ..+++.+|+.++++++|| |+|+||....+ |+ ||.++.+.+|+.+
T Consensus 112 ~~~dK~~~k~~l~~~gIp~p~~~~~~~~~~~e~~~~~~~~~~-P~VvKP~~g~g--s~---------Gv~iv~~~~el~~ 179 (450)
T PRK06111 112 KMGSKIEARRAMQAAGVPVVPGITTNLEDAEEAIAIARQIGY-PVMLKASAGGG--GI---------GMQLVETEQELTK 179 (450)
T ss_pred HhCCHHHHHHHHHHCCCCCCCCcCcCcCCHHHHHHHHHHhCC-CEEEEeCCCCC--Cc---------eEEEECCHHHHHH
Confidence 3467888999999999999986 556899999999999999 99999974332 33 7999999999999
Q ss_pred HHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEee
Q psy12143 112 VAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIA 165 (443)
Q Consensus 112 a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~ 165 (443)
+++.+.... ... .+ ...++||+|+++.+|+.+.+..|.. |-++.+
T Consensus 180 a~~~~~~~~---~~~--~~--~~~~lvEe~i~g~~e~~v~v~~~~~--g~~~~~ 224 (450)
T PRK06111 180 AFESNKKRA---ANF--FG--NGEMYIEKYIEDPRHIEIQLLADTH--GNTVYL 224 (450)
T ss_pred HHHHHHHHH---HHh--cC--CCcEEEEcccCCCcEEEEEEEEcCC--CCEEEE
Confidence 988764321 000 11 1369999999977899999998864 444433
No 45
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=99.10 E-value=7.9e-10 Score=113.88 Aligned_cols=100 Identities=22% Similarity=0.295 Sum_probs=84.6
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
..-++..+|++|+++|||+|++..+++.+++.++++++|| |+|+||....+| + ||.++.|.+|+.+++
T Consensus 64 l~~dK~~~k~~l~~~gIptp~~~~~~~~~ea~~~~~~~g~-PvVvKp~~~~~g--k---------GV~iv~~~~el~~a~ 131 (379)
T PRK13790 64 IEGSKLFAKKIMEKYNIPTADYKEVERKKDALTYIENCEL-PVVVKKDGLAAG--K---------GVIIADTIEAARSAI 131 (379)
T ss_pred HhCCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHhcCC-CEEEEeCCCCCC--C---------CEEEECCHHHHHHHH
Confidence 4578889999999999999999999999999999999999 999999744333 3 799999999999999
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
++++... . ...++||+|+. |.|+.+.+..|..
T Consensus 132 ~~~~~~~--------~---~~~vlvEe~i~-G~E~sv~~~~~g~ 163 (379)
T PRK13790 132 EIMYGDE--------E---EGTVVFETFLE-GEEFSLMTFVNGD 163 (379)
T ss_pred HHHHhcC--------C---CCeEEEEEccc-CceEEEEEEeeCC
Confidence 9876421 0 14699999998 6899999998864
No 46
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=99.09 E-value=1.8e-09 Score=114.59 Aligned_cols=170 Identities=19% Similarity=0.318 Sum_probs=110.2
Q ss_pred CCCHHHHHHHHHHCCCCCCCeee-c--CCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGV-A--KTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEE 111 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~-v--~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~ 111 (443)
.-++...|++|+++|||+|++.. . .+.+++.++++++|| |+++||. .||.|+ |+.++.|++|+.+
T Consensus 112 ~~DK~~~k~~l~~~gIpvpp~~~~~~~~~~~~~~~~~~~igy-PvvvKP~--~ggGg~---------Gv~iv~~~~eL~~ 179 (478)
T PRK08463 112 MGNKNIARYLMKKNGIPIVPGTEKLNSESMEEIKIFARKIGY-PVILKAS--GGGGGR---------GIRVVHKEEDLEN 179 (478)
T ss_pred hCcHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHhCC-CEEEEeC--CCCCCC---------ceEEeCCHHHHHH
Confidence 35678899999999999988543 2 578899999999999 9999996 333333 7999999999999
Q ss_pred HHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCC
Q psy12143 112 VAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDI 191 (443)
Q Consensus 112 a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p 191 (443)
+++....... . . .+ -..++||+|+.+++|+.+.+..|.. |.++.++ .-. . .+.+.++ .+.. ..|
T Consensus 180 a~~~~~~~a~---~-~-~~--~~~vlvEefI~~~~~iev~v~~d~~--g~v~~~~-er~--~-s~~~~~~-~~ie--~~P 243 (478)
T PRK08463 180 AFESCKREAL---A-Y-FN--NDEVFMEKYVVNPRHIEFQILGDNY--GNIIHLC-ERD--C-SIQRRHQ-KVIE--IAP 243 (478)
T ss_pred HHHHHHHHHH---H-h-cC--CCcEEEEecCCCCeEEEEEEEEcCC--CCEEEEe-ccC--C-ccccccC-ceEE--ECC
Confidence 8876532210 0 0 11 2469999999988999999999874 5655443 111 1 1122122 2222 344
Q ss_pred CCCCCHHH-------HHHHHHHcCC-chhHHHHHHHHHHHHHhhhh--CCCeEEeeeceeE
Q psy12143 192 TVGITKEQ-------ALKVADAVGL-KAKRDITAEMLIKMYALFIS--KDASLIEINPYAE 242 (443)
Q Consensus 192 ~~~l~~~~-------a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~--~~~~~lEINPl~v 242 (443)
...++++. |.++++.+|+ |.-. .+++.+ .+...+||||.+.
T Consensus 244 ~~~l~~~~~~~i~~~a~~~~~alg~~g~~~----------vEf~~~~~~~~y~iEiN~R~~ 294 (478)
T PRK08463 244 CPSISDNLRKTMGVTAVAAAKAVGYTNAGT----------IEFLLDDYNRFYFMEMNTRIQ 294 (478)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCCcee----------EEEEEcCCCCEEEEEEECCcC
Confidence 33355533 4556667776 4211 023332 3577899999874
No 47
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=99.09 E-value=1.7e-09 Score=110.05 Aligned_cols=96 Identities=15% Similarity=0.154 Sum_probs=76.6
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecC------CHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAK------TKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPE 107 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~------s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~e 107 (443)
...++..+|++|+++|||+|++..++ +.+++....+.+|| |+|+||. .+|.++ ||.++.|.+
T Consensus 127 i~~DK~~~k~~l~~~GI~~p~~~~~~~~~~~~~~~~~~~~~~~l~~-PvvVKP~--~ggsS~---------GV~~v~~~~ 194 (347)
T PRK14572 127 LAMDKTRANQIFLQSGQKVAPFFELEKLKYLNSPRKTLLKLESLGF-PQFLKPV--EGGSSV---------STYKITNAE 194 (347)
T ss_pred HHhCHHHHHHHHHHcCCCCCCEEEEEccccccChHHHHHHHHhcCC-CEEEecC--CCCCCC---------CEEEECCHH
Confidence 34788899999999999999998874 34444455678999 9999996 444443 788999999
Q ss_pred HHHHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEe
Q psy12143 108 EAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMME 155 (443)
Q Consensus 108 e~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D 155 (443)
|+.++++.++.. ...++||+|++ |+|+.+++..+
T Consensus 195 el~~a~~~~~~~-------------~~~vlVEefI~-G~E~sv~vi~~ 228 (347)
T PRK14572 195 QLMTLLALIFES-------------DSKVMSQSFLS-GTEVSCGVLER 228 (347)
T ss_pred HHHHHHHHHHhc-------------CCCEEEEcCcc-cEEEEEEEEeC
Confidence 999998887532 14699999998 79999999975
No 48
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=99.08 E-value=1.1e-09 Score=114.30 Aligned_cols=103 Identities=23% Similarity=0.258 Sum_probs=84.8
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAG 114 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~ 114 (443)
.-++...|++|+++|||+|++..+++.+++.++++++|| |+|+||....+++ ||.++.|.+|+.++++
T Consensus 100 ~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~-P~VvKP~~~~gs~-----------Gv~~v~~~~el~~~~~ 167 (420)
T PRK00885 100 EGSKAFAKDFMARYGIPTAAYETFTDAEEALAYLDEKGA-PIVVKADGLAAGK-----------GVVVAMTLEEAKAAVD 167 (420)
T ss_pred HcCHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcCC-CEEEEeCCCCCCC-----------cEEEeCCHHHHHHHHH
Confidence 457888999999999999999999999999999999999 9999997443332 7999999999999999
Q ss_pred HHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 115 KMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 115 ~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
+++.... .+.....++||+|++ |.|+++.+..|..
T Consensus 168 ~~~~~~~-------~~~~~~~vlvEe~i~-G~E~sv~~~~~g~ 202 (420)
T PRK00885 168 DMLAGNK-------FGDAGARVVIEEFLD-GEEASFFAFVDGE 202 (420)
T ss_pred HHhhccc-------ccCCCCeEEEEEccC-CcEEEEEEEECCC
Confidence 8865210 111135799999999 6999999998764
No 49
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=99.06 E-value=1.8e-09 Score=124.28 Aligned_cols=98 Identities=20% Similarity=0.261 Sum_probs=82.8
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGK 115 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~ 115 (443)
-+....+++|+++|||+|++..+++.+|+.++++++|| |+++||....||+ ||.++.|++|+.+++++
T Consensus 668 ~DK~~f~~lL~~~GIp~P~~~~v~s~ee~~~~~~~igy-PvIVKP~~~~Gg~-----------gv~iv~~~eeL~~~l~~ 735 (1050)
T TIGR01369 668 EDREKFSELLDELGIPQPKWKTATSVEEAVEFASEIGY-PVLVRPSYVLGGR-----------AMEIVYNEEELRRYLEE 735 (1050)
T ss_pred CCHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHhcCC-CEEEEECCCCCCC-----------CeEEECCHHHHHHHHHH
Confidence 45667889999999999999999999999999999999 9999996443332 78899999999999988
Q ss_pred HhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEec
Q psy12143 116 MIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMER 156 (443)
Q Consensus 116 l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~ 156 (443)
++... . ...++||+|+++|.|+.+.+..|.
T Consensus 736 a~~~s--------~---~~~vlVeefI~~G~E~~Vd~l~d~ 765 (1050)
T TIGR01369 736 AVEVS--------P---EHPVLIDKYLEDAVEVDVDAVSDG 765 (1050)
T ss_pred HHHhC--------C---CCCEEEeecCCCCeEEEEEEEEeC
Confidence 75421 1 246999999998999999999985
No 50
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=99.02 E-value=6.9e-09 Score=104.06 Aligned_cols=125 Identities=23% Similarity=0.277 Sum_probs=97.6
Q ss_pred CHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHHH
Q psy12143 37 HEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKM 116 (443)
Q Consensus 37 ~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~l 116 (443)
+...-|++|++.|||||+|..++|.+|+.++++++|+ |.|+|.. .-|.+|| |.++.++++++...+...
T Consensus 99 dR~~eK~~l~~~Gi~va~~~~v~~~~el~~~~~~~g~-p~VlKtr-~gGYDGk---------GQ~~i~~~~~~~~~~~~~ 167 (375)
T COG0026 99 DRLVEKQFLDKAGLPVAPFQVVDSAEELDAAAADLGF-PAVLKTR-RGGYDGK---------GQWRIRSDADLELRAAGL 167 (375)
T ss_pred hHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcCC-ceEEEec-cccccCC---------CeEEeeCcccchhhHhhh
Confidence 4445699999999999999999999999999999998 9999996 2344776 677777777766654433
Q ss_pred hhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCCCCCC
Q psy12143 117 IGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGIT 196 (443)
Q Consensus 117 ~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~~~l~ 196 (443)
.. ....++|+|+++.+|+++-+.|+.. |-+..+. .+|.+.+ |.|++..+.|+. ++
T Consensus 168 ~~--------------~~~~vlE~fV~F~~EiSvi~aR~~~--G~~~~yP-----~~eN~h~---~gIl~~siaPa~-i~ 222 (375)
T COG0026 168 AE--------------GGVPVLEEFVPFEREISVIVARSND--GEVAFYP-----VAENVHR---NGILRTSIAPAR-IP 222 (375)
T ss_pred hc--------------cCceeEEeecccceEEEEEEEEcCC--CCEEEec-----ccceeee---cCEEEEEEecCc-CC
Confidence 21 1234999999999999999999875 7888877 5788764 688888888863 55
Q ss_pred H
Q psy12143 197 K 197 (443)
Q Consensus 197 ~ 197 (443)
.
T Consensus 223 ~ 223 (375)
T COG0026 223 D 223 (375)
T ss_pred H
Confidence 4
No 51
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=99.02 E-value=2.5e-09 Score=123.50 Aligned_cols=99 Identities=22% Similarity=0.288 Sum_probs=82.2
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGK 115 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~ 115 (443)
-+....+++|+++|||+|++..+++.+|+.++++++|| |||+||....||+ ||.++.|.+|+.+++++
T Consensus 668 ~DK~~~~~~L~~~GIp~P~~~~~~s~ee~~~~~~~igy-PvvVKP~~~~Gg~-----------Gv~iv~~~eeL~~~~~~ 735 (1066)
T PRK05294 668 EDRERFSKLLEKLGIPQPPNGTATSVEEALEVAEEIGY-PVLVRPSYVLGGR-----------AMEIVYDEEELERYMRE 735 (1066)
T ss_pred CCHHHHHHHHHHcCcCCCCeEEECCHHHHHHHHHhcCC-CeEEEeCCCCCCC-----------cEEEECCHHHHHHHHHH
Confidence 46667899999999999999999999999999999999 9999996443332 78899999999999887
Q ss_pred HhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 116 MIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 116 l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
.+... ....++||+|+++..|+.+.+.+|..
T Consensus 736 a~~~s-----------~~~~vlIEefI~G~~E~sV~~v~dg~ 766 (1066)
T PRK05294 736 AVKVS-----------PDHPVLIDKFLEGAIEVDVDAICDGE 766 (1066)
T ss_pred HHhhC-----------CCCcEEEEecCCCCEEEEEEEEecCC
Confidence 65421 02469999999966699999998864
No 52
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=99.02 E-value=4.9e-09 Score=104.53 Aligned_cols=98 Identities=21% Similarity=0.297 Sum_probs=77.7
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHc-CCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKL-NIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEV 112 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~l-g~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a 112 (443)
..-++..++++|+++|||+|++.++.+.+++.++.+++ || |+|+||. .++.|+ ||.+..+.+++..+
T Consensus 96 ~~~dK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~~~~-P~VvKP~--~g~~g~---------GV~~v~~~~~~~~~ 163 (300)
T PRK10446 96 RARDKLRSMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGA-PLVVKLV--EGTQGI---------GVVLAETRQAAESV 163 (300)
T ss_pred hhhcHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHHhCCC-CEEEEEC--CCCCcc---------cEEEEcCHHHHHHH
Confidence 34688889999999999999999999998888888887 77 9999996 344443 78888888888777
Q ss_pred HHHHhhchhhhhhcCCCCcccCeEEEEeeeC--CCeeeEEEEEEec
Q psy12143 113 AGKMIGDYLITKQTGEKGRICNAVMVTERKY--PRKEYYFAFMMER 156 (443)
Q Consensus 113 ~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~--~g~El~vgv~~D~ 156 (443)
.+.+... -..++||+|++ .+.|+.+.+..+.
T Consensus 164 ~~~~~~~-------------~~~~lvQe~I~~~~g~d~rv~vig~~ 196 (300)
T PRK10446 164 IDAFRGL-------------NAHILVQEYIKEAQGCDIRCLVVGDE 196 (300)
T ss_pred HHHHHhc-------------CCCEEEEeeeccCCCceEEEEEECCE
Confidence 6654221 13599999995 5899999988654
No 53
>PRK06524 biotin carboxylase-like protein; Validated
Probab=99.01 E-value=1e-08 Score=107.46 Aligned_cols=97 Identities=22% Similarity=0.293 Sum_probs=79.1
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeee--cCCHHHHHHHHHH--cCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGV--AKTKKEAGEIAKK--LNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEA 109 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~--v~s~~ea~~~a~~--lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~ 109 (443)
...++..+|++++++|||+|++.. +.+.+++...++. +|| |+||||. .+|.|+ |+.++.+.+|+
T Consensus 139 i~mDK~~tK~l~~~aGIPtpp~~~~~~~~~eel~~~~~~~~IGy-PvVVKP~--~GGSS~---------GV~~Vkn~eEL 206 (493)
T PRK06524 139 RLDSKIVTTRLANEAGVPSVPHVLGRVDSYDELSALAHGAGLGD-DLVVQTP--YGDSGS---------TTFFVRGQRDW 206 (493)
T ss_pred HhCCHHHHHHHHHHcCCCCCCcccccCCCHHHHHHHHHhccCCC-cEEEEEC--CCCCCc---------CEEEeCCHHHH
Confidence 346788899999999999999988 4677777766665 999 9999996 455554 79999999999
Q ss_pred HHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 110 EEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 110 ~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
.+++++++. ...++||+++. +.|+.|.+..|..
T Consensus 207 e~a~~~~~~--------------~~~viVEe~I~-GrEitVev~vd~d 239 (493)
T PRK06524 207 DKYAGGIVG--------------QPEIKVMKRIR-NVEVCIEACVTRH 239 (493)
T ss_pred HHHHHHhcC--------------CCCEEEEeccC-cEEEEEEEEEeCC
Confidence 998877642 13589999997 8999998888864
No 54
>PRK12999 pyruvate carboxylase; Reviewed
Probab=99.00 E-value=4.2e-09 Score=121.41 Aligned_cols=169 Identities=24% Similarity=0.353 Sum_probs=111.9
Q ss_pred CCHHHHHHHHHHCCCCCCCee--ecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFG--VAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~--~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
-++..+|+++.++|||+|++. .+.+.+|+.++++++|| |+++||. .||.|+ ||+++.+++|+.+++
T Consensus 118 ~DK~~~r~~l~~~GVPv~P~~~~~v~s~eea~~~a~~iGy-PvVVKP~--~GgGGr---------Gv~vV~~~eEL~~a~ 185 (1146)
T PRK12999 118 GDKVAARNAAIKAGVPVIPGSEGPIDDIEEALEFAEEIGY-PIMLKAS--AGGGGR---------GMRIVRSEEELEEAF 185 (1146)
T ss_pred CCHHHHHHHHHHCCCCCCCCcccCCCCHHHHHHHHHHhCC-CEEEEEC--CCCCCC---------CeEEeCCHHHHHHHH
Confidence 578889999999999998865 58999999999999999 9999996 333333 799999999999998
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCCC
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITV 193 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~~ 193 (443)
++...... .. .+ ...++||+|+++.+|+.+.+..|.. |-++.+. .. + ..+...+ ..++ -..|..
T Consensus 186 ~~a~~ea~---~~--fg--~~~vlVEefI~g~~~ieVqvl~D~~--G~vv~l~-er--d-csvqrr~-qk~i--e~aP~~ 249 (1146)
T PRK12999 186 ERAKREAK---AA--FG--NDEVYLEKYVENPRHIEVQILGDKH--GNVVHLY-ER--D-CSVQRRH-QKVV--EIAPAP 249 (1146)
T ss_pred HHHHHHHH---hh--cC--CCcEEEecCCCCCeEEEEEEEEECC--CCEEEEE-cc--c-cceeecC-ccEE--EEcCCC
Confidence 87654321 00 12 2469999999988999999999975 5555442 11 0 0112111 1222 234543
Q ss_pred CCCHH-------HHHHHHHHcCC-chhHHHHHHHHHHHHHhhhh-C-CCeEEeeeceeE
Q psy12143 194 GITKE-------QALKVADAVGL-KAKRDITAEMLIKMYALFIS-K-DASLIEINPYAE 242 (443)
Q Consensus 194 ~l~~~-------~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~-~-~~~~lEINPl~v 242 (443)
.++.. .|.++++.+|+ |.-. .+++.+ . +..++||||.+.
T Consensus 250 ~L~~~~~~~l~~~A~kl~~algy~G~gt----------VEflvd~dg~~yfIEINpRlq 298 (1146)
T PRK12999 250 GLSEELRERICEAAVKLARAVGYVNAGT----------VEFLVDADGNFYFIEVNPRIQ 298 (1146)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCceEE----------EEEEEECCCCEEEEEEECCCC
Confidence 45553 35556666676 4211 012222 2 467899999763
No 55
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=99.00 E-value=4.7e-09 Score=104.96 Aligned_cols=97 Identities=20% Similarity=0.301 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecC-CHHHH-----HHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAK-TKKEA-----GEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEE 108 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~-s~~ea-----~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee 108 (443)
..++...|++|+++|||+|++..++ +.++. ..+.+.++| |+|+||.. ++.++ ||.++.|.++
T Consensus 103 ~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~~~~~-P~vvKP~~--~~~s~---------Gv~~v~~~~e 170 (315)
T TIGR01205 103 SMDKLLTKLLWKALGLPTPDYIVLTQNRASADELECEQVAEPLGF-PVIVKPAR--EGSSV---------GVSKVKSEEE 170 (315)
T ss_pred HHCHHHHHHHHHHCCCCCCCEEEEecccccchhhhHHHHHHhcCC-CEEEEeCC--CCCcc---------CEEEECCHHH
Confidence 4688899999999999999999887 54322 234568998 99999963 33332 7889999999
Q ss_pred HHHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 109 AEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 109 ~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
+.+++++++.. ...++||+|++ |+|+.+++..+..
T Consensus 171 l~~~~~~~~~~-------------~~~~lvEe~i~-G~e~~v~vi~~~~ 205 (315)
T TIGR01205 171 LQAALDEAFEY-------------DEEVLVEQFIK-GRELEVSILGNEE 205 (315)
T ss_pred HHHHHHHHHhc-------------CCcEEEEcCCC-CEEEEEEEECCCC
Confidence 99988876431 14699999998 8999999998643
No 56
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.99 E-value=5.3e-09 Score=120.23 Aligned_cols=109 Identities=18% Similarity=0.282 Sum_probs=86.6
Q ss_pred CCCHHHHHHHHHHCCCCCCCee--ecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFG--VAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEV 112 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~--~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a 112 (443)
.-++..+|++++++|||+|++. .+.+.+++.++++++|| |+++||. .+|.|+ |++++.+++|+.++
T Consensus 113 ~~DK~~ar~la~~~GVPvpp~t~~~v~~~eea~~~ae~iGy-PvIVKP~--~GGGGr---------G~riV~~~eEL~~a 180 (1143)
T TIGR01235 113 LGDKVAARNLAIKAGVPVVPGTDGPPETMEEVLDFAAAIGY-PVIIKAS--WGGGGR---------GMRVVRSEADVADA 180 (1143)
T ss_pred hcCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHHcCC-CEEEEEC--CCCCCC---------ccEEeCCHHHHHHH
Confidence 3578889999999999999975 57899999999999999 9999996 444343 79999999999999
Q ss_pred HHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEe
Q psy12143 113 AGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLI 164 (443)
Q Consensus 113 ~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~ 164 (443)
+++...... . ..+ ...++||+|+++++|+.+.+..|.. |.++.
T Consensus 181 ~~~a~~ea~---~--~fg--~~~vlIEefI~g~reIeVqVlgD~~--G~vv~ 223 (1143)
T TIGR01235 181 FQRAKSEAK---A--AFG--NDEVYVEKLIERPRHIEVQLLGDKH--GNVVH 223 (1143)
T ss_pred HHHHHHHHH---H--hcC--CCcEEEEEcCCCCeEEEEEEEEeCC--CCEEE
Confidence 887754321 0 012 2469999999988999999999975 55543
No 57
>PRK02186 argininosuccinate lyase; Provisional
Probab=98.99 E-value=5.4e-09 Score=118.65 Aligned_cols=97 Identities=19% Similarity=0.188 Sum_probs=81.3
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAG 114 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~ 114 (443)
.-+++..|++|+++|||+|++..+++.+|+.++++++|| |+|+||....| ++ ||.++.|.+|+.++++
T Consensus 105 ~~dK~~~r~~L~~~GIp~P~~~~v~~~~e~~~~~~~~~~-PvVVKP~~g~g--S~---------GV~~v~~~~el~~a~~ 172 (887)
T PRK02186 105 CRDKKRLARTLRDHGIDVPRTHALALRAVALDALDGLTY-PVVVKPRMGSG--SV---------GVRLCASVAEAAAHCA 172 (887)
T ss_pred hcCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHHhCCC-CEEEEeCCCCC--CC---------CeEEECCHHHHHHHHH
Confidence 467788999999999999999999999999999999999 99999964332 22 7999999999999988
Q ss_pred HHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEec
Q psy12143 115 KMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMER 156 (443)
Q Consensus 115 ~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~ 156 (443)
++.... ...++||+|++ |.|+.+.+..+.
T Consensus 173 ~~~~~~------------~~~~lvEEfI~-G~E~sVe~i~~~ 201 (887)
T PRK02186 173 ALRRAG------------TRAALVQAYVE-GDEYSVETLTVA 201 (887)
T ss_pred HHHhcC------------CCcEEEeeccc-CCcEEEEEEEEC
Confidence 774321 24699999999 689999988875
No 58
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.97 E-value=5.8e-09 Score=120.28 Aligned_cols=96 Identities=21% Similarity=0.293 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGK 115 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~ 115 (443)
-+.+..+++|+++|||+|++..++|.+|+.++++++|| |+++||....||+ |+.++.|.+|+.+++++
T Consensus 669 ~DK~~f~~ll~~~GIp~P~~~~~~s~ee~~~~~~~igy-PvVVKP~~~~Gg~-----------gv~iv~~~eeL~~~l~~ 736 (1068)
T PRK12815 669 EDRDRFYQLLDELGLPHVPGLTATDEEEAFAFAKRIGY-PVLIRPSYVIGGQ-----------GMAVVYDEPALEAYLAE 736 (1068)
T ss_pred cCHHHHHHHHHHcCcCCCCeEEeCCHHHHHHHHHhcCC-CEEEEeCCCCCCC-----------CEEEECCHHHHHHHHHH
Confidence 45667889999999999999999999999999999999 9999996443332 78899999999988887
Q ss_pred HhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 116 MIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 116 l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
.... ...++||+|+. |.|+.+.+..|..
T Consensus 737 ~~s~-------------~~~vlIeefI~-G~E~~Vd~i~dg~ 764 (1068)
T PRK12815 737 NASQ-------------LYPILIDQFID-GKEYEVDAISDGE 764 (1068)
T ss_pred hhcC-------------CCCEEEEEeec-CceEEEEEEEcCC
Confidence 6111 24699999997 7899999999864
No 59
>KOG0237|consensus
Probab=98.94 E-value=3.4e-09 Score=110.17 Aligned_cols=116 Identities=22% Similarity=0.281 Sum_probs=99.0
Q ss_pred cccccCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHH
Q psy12143 30 QKRNLNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEA 109 (443)
Q Consensus 30 ~~~~~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~ 109 (443)
|.-++.-++.++|++|.+|||||+.|..+++++++..+.+..+|+++|+|++.++.|| ||.+..+.+|+
T Consensus 101 ~aAqlE~sK~fsK~fm~r~~IPTA~y~~ft~~e~a~sfi~~~~~~~~ViKAdGLAAGK-----------GViv~~~~~EA 169 (788)
T KOG0237|consen 101 QAAQLEASKNFSKDFMHRHNIPTAKYKTFTDPEEAKSFIQSATDKALVIKADGLAAGK-----------GVIVAKSKEEA 169 (788)
T ss_pred HHHHhhhhHHHHHHHHHhcCCCcceeeeeCCHHHHHHHHHhCCCcceEEeecccccCC-----------ceEeeccHHHH
Confidence 3445667888999999999999999999999999999999999779999999888766 79899999999
Q ss_pred HHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEe
Q psy12143 110 EEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLI 164 (443)
Q Consensus 110 ~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~ 164 (443)
-+|.++||.... .|.....++|||+++ |.|+++-...|....-|+..
T Consensus 170 ~eAv~sIl~~~~-------fg~AG~tvViEE~LE-GeEvS~laftDG~s~~~mp~ 216 (788)
T KOG0237|consen 170 FEAVDSILVKKV-------FGSAGKTVVIEELLE-GEEVSFLAFTDGYSVRPLPP 216 (788)
T ss_pred HHHHHHHHhhhh-------hccccceEehhhhcC-cceEEEEEEecCcccccCCc
Confidence 999999987642 344457899999999 89999999999765556543
No 60
>PRK07206 hypothetical protein; Provisional
Probab=98.93 E-value=2.1e-08 Score=104.19 Aligned_cols=102 Identities=20% Similarity=0.231 Sum_probs=80.8
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCC--eEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIK--DIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~--PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
-+++..|++|.++|||+|++..+++.+|+.++++++||. |+|+||....|+ -||.++.|.+|+.+++
T Consensus 107 ~dK~~~r~~l~~~gi~~p~~~~~~~~~e~~~~~~~~g~~~~P~VvKP~~g~gs-----------~gv~~v~~~~el~~~~ 175 (416)
T PRK07206 107 RNKAEMINALAEAGLPAARQINTADWEEAEAWLRENGLIDRPVVIKPLESAGS-----------DGVFICPAKGDWKHAF 175 (416)
T ss_pred hCHHHHHHHHHHcCCCcccEEecCCHHHHHHHHHhcCCCCCCEEEeCCCCCCC-----------CCEEEeCCHHHHHHHH
Confidence 578889999999999999999999999999999887752 999999633322 2799999999999999
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEe
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMME 155 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D 155 (443)
+++++... . .+.....++||+|++ |.|+.+.+...
T Consensus 176 ~~~~~~~~---~---~~~~~~~~lvEe~i~-G~E~sv~~~~~ 210 (416)
T PRK07206 176 NAILGKAN---K---LGLVNETVLVQEYLI-GTEYVVNFVSL 210 (416)
T ss_pred HHHHhccc---c---CCCCCCeEEEEEccc-cEEEEEEEEEE
Confidence 98865310 0 111235799999999 78999887753
No 61
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=98.92 E-value=5.6e-09 Score=98.48 Aligned_cols=88 Identities=28% Similarity=0.445 Sum_probs=67.3
Q ss_pred HHHHCCCCCCCeeecCCHHH----HHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHHHhhc
Q psy12143 44 LLKEGGIPVPPFGVAKTKKE----AGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGD 119 (443)
Q Consensus 44 lL~~~GIpv~~~~~v~s~~e----a~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~l~~~ 119 (443)
||+.+|||||++.++...+. ..+..+.++| |++|||. .+|.+. ||..+.|.+++.++.++++..
T Consensus 1 l~~~~gI~tp~~~~~~~~~~~~~~~~~~~~~l~~-P~~VKP~--~~GsS~---------Gi~~v~~~~el~~ai~~~~~~ 68 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNEDDSDSIEKILEDLGF-PLFVKPA--SEGSSI---------GISKVHNEEELEEAIEKAFKY 68 (203)
T ss_dssp HHHHTT-BB-SEEEEETTSHHHHHHHHHHHHHSS-SEEEEES--STSTTT---------TEEEESSHHHHHHHHHHHTTT
T ss_pred ChhhcCCCCCCEEEEecccccchhHHHHHhhcCC-CEEEEEC--CCCccE---------EEEEcCCHHHHHHHHHHHhhh
Confidence 68999999999999865433 3456789999 9999996 445544 788999999999999887532
Q ss_pred hhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 120 YLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 120 ~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
...+|||+|++ |+|+++++..+..
T Consensus 69 -------------~~~vlVEefI~-G~E~tv~vl~~~~ 92 (203)
T PF07478_consen 69 -------------DDDVLVEEFIS-GREFTVGVLGNGE 92 (203)
T ss_dssp -------------HSEEEEEE--S-SEEEEEEEEESSS
T ss_pred -------------cceEEEEeeec-ccceEEEEEecCC
Confidence 25799999996 9999999999553
No 62
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.90 E-value=2.1e-08 Score=104.48 Aligned_cols=139 Identities=21% Similarity=0.302 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHCCCCCCCee--ecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHH
Q psy12143 37 HEHVSYTLLKEGGIPVPPFG--VAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAG 114 (443)
Q Consensus 37 ~e~~ak~lL~~~GIpv~~~~--~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~ 114 (443)
++..+|.++.++|+|+.|+. .+.+.+++..+++++|| ||.+|+. +||.|| |.+++.+++|+.++++
T Consensus 115 dK~~AK~l~~~AgVp~VPG~~g~~qd~~~~~~~A~eiGy-PVlIKAs--aGGGGK---------GMRvv~~~~e~~e~l~ 182 (645)
T COG4770 115 DKIAAKKLAAEAGVPTVPGYHGPIQDAAELVAIAEEIGY-PVLIKAS--AGGGGK---------GMRVVETPEEFAEALE 182 (645)
T ss_pred cHHHHHHHHHHcCCCccCCCCCcccCHHHHHHHHHhcCC-cEEEEec--cCCCCC---------ceEeecCHHHHHHHHH
Confidence 45679999999999998875 57899999999999999 9999996 666676 7999999999999888
Q ss_pred HHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCCCC
Q psy12143 115 KMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVG 194 (443)
Q Consensus 115 ~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~~~ 194 (443)
..-+.. ...+|. ..++||+|+...+.+.+.|..|.. |-++-.+ + -+- ++++++ .+++.. +|...
T Consensus 183 sarrEA-----~asFGd--drv~iEkyl~~PRHIEiQV~aD~H--GNvv~Lg-E--RdC-SlQRRh-QKVIEE--APaP~ 246 (645)
T COG4770 183 SARREA-----KASFGD--DRVFIEKYLDKPRHIEIQVFADQH--GNVVHLG-E--RDC-SLQRRH-QKVIEE--APAPF 246 (645)
T ss_pred HHHHHH-----HhhcCC--ceEehhhhcCCCceEEEEEEecCC--CCEEEee-c--ccc-chhhhc-chhhhc--CCCCC
Confidence 764432 122454 689999999988999999999985 5655444 1 111 333332 344444 45555
Q ss_pred CCHHHHHHH
Q psy12143 195 ITKEQALKV 203 (443)
Q Consensus 195 l~~~~a~~~ 203 (443)
++++.-++|
T Consensus 247 l~~~~R~am 255 (645)
T COG4770 247 LTEETREAM 255 (645)
T ss_pred CCHHHHHHH
Confidence 777654333
No 63
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=98.89 E-value=9.6e-09 Score=103.11 Aligned_cols=92 Identities=21% Similarity=0.291 Sum_probs=75.4
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHH--HHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGE--IAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~--~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
-++...+++|.++|||+|++..+++.+++.+ ..++++| |+|+||.... .++ ||.++.|.+|+.+++
T Consensus 110 ~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~-P~viKP~~g~--~s~---------gv~~v~~~~el~~~~ 177 (326)
T PRK12767 110 NDKWLTYEFLKENGIPTPKSYLPESLEDFKAALAKGELQF-PLFVKPRDGS--ASI---------GVFKVNDKEELEFLL 177 (326)
T ss_pred hcHHHHHHHHHHcCCCCCCEEcccCHHHHHhhhhcccCCC-CEEEEeCCCC--Ccc---------CeEEeCCHHHHHHHH
Confidence 5677889999999999999999999999877 5678898 9999996322 222 788899999988776
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
++. ..++||+|+. |.|+.+.+..|..
T Consensus 178 ~~~-----------------~~~lvqeyi~-G~e~~v~~~~~~~ 203 (326)
T PRK12767 178 EYV-----------------PNLIIQEFIE-GQEYTVDVLCDLN 203 (326)
T ss_pred HhC-----------------CCeEEEeccC-CceEEEEEEEcCC
Confidence 532 3699999996 8999999999853
No 64
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=98.86 E-value=3.3e-08 Score=90.25 Aligned_cols=98 Identities=27% Similarity=0.333 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGK 115 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~ 115 (443)
-++...+++++++|||+|++..+++.+++.++.+.++| |+|+||....++ -||.+..|++++.+++++
T Consensus 3 ~dK~~~~~~~~~~gv~~P~~~~~~~~~~~~~~~~~~~~-p~vvKp~~g~gs-----------~gv~~~~~~~~l~~~~~~ 70 (184)
T PF13535_consen 3 NDKYRMRELLKKAGVPVPKTRIVDSEEELRAFAEDLGF-PFVVKPVDGSGS-----------RGVFIVHSPEELEAALAE 70 (184)
T ss_dssp CCHHHHHHHHHHHTS----EEEECSHHHHHHHHHHSSS-SEEEEESS-STT-----------TT-EEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHcCC-CEEEEcCccccC-----------CCEEEeCCHHHHHHHHHH
Confidence 46778999999999999999999999999999999998 999999643332 279999999999999888
Q ss_pred HhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEe
Q psy12143 116 MIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMME 155 (443)
Q Consensus 116 l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D 155 (443)
+.... . .....+++|+|++ |.|+.+-+..+
T Consensus 71 ~~~~~--------~-~~~~~~ivqe~i~-g~e~~~~~~~~ 100 (184)
T PF13535_consen 71 IREDS--------P-LGNGPVIVQEYIP-GDEYSVDGVVD 100 (184)
T ss_dssp HHHHH--------S--HSSSEEEEE----SEEEEEEEEEE
T ss_pred HHHhc--------c-cCCccEEEEEeee-eeeEEEEEEEE
Confidence 75432 0 1125799999999 79999988877
No 65
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=98.85 E-value=5.5e-09 Score=97.38 Aligned_cols=96 Identities=25% Similarity=0.421 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHc-CCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHH
Q psy12143 37 HEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKL-NIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGK 115 (443)
Q Consensus 37 ~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~l-g~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~ 115 (443)
++..+.++|+++|||+|++.++.+.+++.++.+++ ++ |+|+|+. .++.|+ ||.+..+.+++....+.
T Consensus 3 dK~~~~~~l~~~gipvP~t~~~~~~~~~~~~~~~~~~~-p~ViKp~--~g~~G~---------gV~~i~~~~~~~~~l~~ 70 (190)
T PF08443_consen 3 DKLLTLQLLAKAGIPVPETRVTNSPEEAKEFIEELGGF-PVVIKPL--RGSSGR---------GVFLINSPDELESLLDA 70 (190)
T ss_dssp BHHHHHHHHHHTT-----EEEESSHHHHHHHHHHH--S-SEEEE-S--B----------------EEEESHCHHHHHHH-
T ss_pred CHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHhcCC-CEEEeeC--CCCCCC---------EEEEecCHHHHHHHHHH
Confidence 45668899999999999999999999999999999 88 9999996 344443 78888999988877654
Q ss_pred HhhchhhhhhcCCCCcccCeEEEEeeeCCC--eeeEEEEEEecc
Q psy12143 116 MIGDYLITKQTGEKGRICNAVMVTERKYPR--KEYYFAFMMERS 157 (443)
Q Consensus 116 l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g--~El~vgv~~D~~ 157 (443)
.... -..+++|+|++.. +++.+-+..+..
T Consensus 71 ~~~~-------------~~~~~~Q~fI~~~~g~d~Rv~Vig~~v 101 (190)
T PF08443_consen 71 FKRL-------------ENPILVQEFIPKDGGRDLRVYVIGGKV 101 (190)
T ss_dssp -----------------TTT-EEEE----SS---EEEEEETTEE
T ss_pred HHhc-------------cCcceEeccccCCCCcEEEEEEECCEE
Confidence 3211 1357999999753 588888776654
No 66
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=98.85 E-value=3.8e-08 Score=98.03 Aligned_cols=91 Identities=21% Similarity=0.291 Sum_probs=72.2
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAG 114 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~ 114 (443)
..++..+|++|+ .|||+|++..+++.. ..+.+|| |+|+||. .++.++ ||.++.|.+++.++++
T Consensus 93 ~~DK~~~k~~l~-~~ip~p~~~~~~~~~----~~~~l~~-P~vvKP~--~g~~s~---------Gv~~v~~~~el~~~~~ 155 (299)
T PRK14571 93 CFDKLLTYRFLK-GTVEIPDFVEIKEFM----KTSPLGY-PCVVKPR--REGSSI---------GVFICESDEEFQHALK 155 (299)
T ss_pred HcCHHHHHHHHh-cCCCCCCEEEEechh----hhhhcCC-CEEEecC--CCCCcC---------CEEEECCHHHHHHHHH
Confidence 467888999998 489999999886533 2457899 9999996 333333 7889999999998887
Q ss_pred HHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEec
Q psy12143 115 KMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMER 156 (443)
Q Consensus 115 ~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~ 156 (443)
+.+.. ...++||+|++ |+|+++++..+.
T Consensus 156 ~~~~~-------------~~~vlVEeyI~-G~E~sv~vl~~~ 183 (299)
T PRK14571 156 EDLPR-------------YGSVIVQEYIP-GREMTVSILETE 183 (299)
T ss_pred HHHhh-------------CCcEEEEcccc-ceEEEEEEEcCC
Confidence 76532 14699999998 899999999875
No 67
>KOG0369|consensus
Probab=98.84 E-value=4.6e-08 Score=103.09 Aligned_cols=277 Identities=20% Similarity=0.322 Sum_probs=163.7
Q ss_pred CHHHHHHHHHHCCCCCCCee--ecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHH
Q psy12143 37 HEHVSYTLLKEGGIPVPPFG--VAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAG 114 (443)
Q Consensus 37 ~e~~ak~lL~~~GIpv~~~~--~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~ 114 (443)
++..++.+.-++|+|+.|+. .+++.+|+.+++++.|+ |+++|+.. ||.|+ |.+++++.++++++++
T Consensus 147 DKv~AR~~Ai~agVpvVPGTpgPitt~~EA~eF~k~yG~-PvI~KAAy--GGGGR---------GmRvVr~~e~vee~f~ 214 (1176)
T KOG0369|consen 147 DKVAARAIAIEAGVPVVPGTPGPITTVEEALEFVKEYGL-PVIIKAAY--GGGGR---------GMRVVRSGEDVEEAFQ 214 (1176)
T ss_pred hHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCC-cEEEeecc--cCCCc---------ceEEeechhhHHHHHH
Confidence 45678899999999998875 67899999999999999 99999963 44333 7899999999999998
Q ss_pred HHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEE-eecCCCCcchhcccccCCCeEEEEecCCCC
Q psy12143 115 KMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVL-IASSQGGVNIEEVAAENPSAILYEPVDITV 193 (443)
Q Consensus 115 ~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv-~~g~~GGv~vE~l~~~~~d~v~~~~l~p~~ 193 (443)
+...... ..+|. ..++||+|++..+.+.+.+..|.. |-++ ++-.-+ .+++. ..+++ -++|+.
T Consensus 215 Ra~SEA~-----aaFGn--G~~FvEkF~ekPrHIEvQllgD~~--GNvvHLyERDC-----SvQRR-HQKVV--EiAPA~ 277 (1176)
T KOG0369|consen 215 RAYSEAL-----AAFGN--GTLFVEKFLEKPRHIEVQLLGDKH--GNVVHLYERDC-----SVQRR-HQKVV--EIAPAK 277 (1176)
T ss_pred HHHHHHH-----HhcCC--ceeeHHhhhcCcceeEEEEecccC--CCEEEEeeccc-----chhhh-hccee--Eecccc
Confidence 8765432 12343 568999999988999999999985 5544 433211 12222 23454 357766
Q ss_pred CCCHH-------HHHHHHHHcCC-chhHHHHHHHHHHHHHhhhhC--CCeEEeeeceeEcc---CCCEE---EEeEEEEe
Q psy12143 194 GITKE-------QALKVADAVGL-KAKRDITAEMLIKMYALFISK--DASLIEINPYAEDA---TGNFF---GLDAKMRF 257 (443)
Q Consensus 194 ~l~~~-------~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~~--~~~~lEINPl~v~~---~g~~~---alDa~i~l 257 (443)
.+++. +|.++.+..|+ .+-.. +...+. .-..|||||.+.-+ ..++. .+.|.|.+
T Consensus 278 ~Lp~~vR~~~~~davklAk~vgY~NAGTv----------EFLvD~~g~hYFIEvN~RlQVEHTvTEEITgvDlV~aQi~v 347 (1176)
T KOG0369|consen 278 TLPPEVRDAILTDAVKLAKHVGYENAGTV----------EFLVDQKGRHYFIEVNPRLQVEHTVTEEITGVDLVQAQIHV 347 (1176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCcccCCce----------EEEEccCCCEEEEEecCceeeeeeeeeeeccchhhhhhhhh
Confidence 67764 34555556666 21111 122333 33579999977532 11233 34455555
Q ss_pred cCcchhhhhhhhc----ccCCccCCHHHHHHhcCCCeEeecCCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCC
Q psy12143 258 DDNAEFRQKALFD----LRDWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGAT 333 (443)
Q Consensus 258 ~~~a~~rqp~i~~----~~~~~~~~~~e~~a~~~~l~~~~~~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~ 333 (443)
...+..-+-|+.+ -+.....-..-.++-+ =.+++-.|||-+.-+|+|.|+-. | |++.
T Consensus 348 AeG~tLp~lgl~QdkI~trG~aIQCRvTTEDPa--~~FqPdtGriEVfRSgeGmGiRL-D-----~asa----------- 408 (1176)
T KOG0369|consen 348 AEGASLPDLGLTQDKITTRGFAIQCRVTTEDPA--KGFQPDTGRIEVFRSGEGMGIRL-D-----GASA----------- 408 (1176)
T ss_pred hcCCCcccccccccceeecceEEEEEEeccCcc--ccCCCCCceEEEEEeCCCceEee-c-----Cccc-----------
Confidence 5433222111110 0000000000000000 12344568999999999988732 1 1110
Q ss_pred HHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHc
Q psy12143 334 AAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQEL 378 (443)
Q Consensus 334 ~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~ 378 (443)
|..+. =+|.+|.++|-...+..+....+..|+++..++
T Consensus 409 ---faGav----IsPhYDSllVK~i~h~~~~~~~a~KMiRaL~eF 446 (1176)
T KOG0369|consen 409 ---FAGAV----ISPHYDSLLVKVICHGSTYEIAARKMIRALIEF 446 (1176)
T ss_pred ---ccccc----ccccccceEEEEEecCCccHHHHHHHHHHHHHH
Confidence 11111 268899999843333333455667777777664
No 68
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=98.84 E-value=1.6e-08 Score=102.33 Aligned_cols=95 Identities=23% Similarity=0.292 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHH----HHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKE----AGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAE 110 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~e----a~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~ 110 (443)
..++..+|++|+++|||+|++..+.+.++ ...+.+.+|| |+|+||. .+|.+. ||.++.+.+++.
T Consensus 121 ~~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~~~~~~-P~vVKP~--~~gsS~---------Gv~~v~~~~el~ 188 (333)
T PRK01966 121 SMDKILTKRLLAAAGIPVAPYVVLTRGDWEEASLAEIEAKLGL-PVFVKPA--NLGSSV---------GISKVKNEEELA 188 (333)
T ss_pred HhCHHHHHHHHHHcCCCCCCEEEEeccccchhhHHHHHHhcCC-CEEEEeC--CCCCcc---------CEEEECCHHHHH
Confidence 37888999999999999999998876544 2456678999 9999996 334333 799999999999
Q ss_pred HHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEe
Q psy12143 111 EVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMME 155 (443)
Q Consensus 111 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D 155 (443)
+++++.+.. ...++||+|++ |+|+.+++..+
T Consensus 189 ~a~~~~~~~-------------~~~vlvEefI~-G~E~~v~vl~~ 219 (333)
T PRK01966 189 AALDLAFEY-------------DRKVLVEQGIK-GREIECAVLGN 219 (333)
T ss_pred HHHHHHHhc-------------CCcEEEEcCcC-CEEEEEEEECC
Confidence 999887542 14799999999 79999999986
No 69
>PRK14016 cyanophycin synthetase; Provisional
Probab=98.81 E-value=2.6e-08 Score=110.57 Aligned_cols=95 Identities=24% Similarity=0.353 Sum_probs=79.2
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEE-eCCHHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKM-VDTPEEAEEVA 113 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l-~~s~ee~~~a~ 113 (443)
.-++..+|++|+++|||+|++..+.+.+++.++++++|| |+|+||. .|+.|+ ||.+ ..|++++.+++
T Consensus 212 ~~DK~~tk~lL~~~GIPvP~~~~v~s~~~a~~~a~~iG~-PvVVKP~--~G~~G~---------GV~~~v~~~~el~~a~ 279 (727)
T PRK14016 212 ACDKELTKRLLAAAGVPVPEGRVVTSAEDAWEAAEEIGY-PVVVKPL--DGNHGR---------GVTVNITTREEIEAAY 279 (727)
T ss_pred hCCHHHHHHHHHHCCcCCCCeeEeCCHHHHHHHHHHcCC-CEEEEEC--CCCCCC---------ceEEecCCHHHHHHHH
Confidence 467888999999999999999999999999999999999 9999996 333333 7888 68999999998
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEe
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMME 155 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D 155 (443)
+.+... ...++||+|++ |.|+.+.+..+
T Consensus 280 ~~a~~~-------------~~~viVEe~I~-G~d~Rv~Vvgg 307 (727)
T PRK14016 280 AVASKE-------------SSDVIVERYIP-GKDHRLLVVGG 307 (727)
T ss_pred HHHHHh-------------CCeEEEEEecC-CceEEEEEECC
Confidence 876431 14799999998 88988877644
No 70
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=98.79 E-value=4.1e-08 Score=100.65 Aligned_cols=95 Identities=17% Similarity=0.201 Sum_probs=75.7
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecC------CHHHHHH-HHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAK------TKKEAGE-IAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEE 108 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~------s~~ea~~-~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee 108 (443)
.++..+|++|+++|||||++..++ +.+++.+ +.+.+|| |++|||. .+|.+. ||.++.+.+|
T Consensus 128 ~DK~~tK~~l~~~GIpt~p~~~~~~~~~~~~~~~~~~~~~~~lg~-PviVKP~--~~GsS~---------Gv~~v~~~~e 195 (364)
T PRK14570 128 INKYFCKLLLKSFNIPLVPFIGFRKYDYFLDKEGIKKDIKEVLGY-PVIVKPA--VLGSSI---------GINVAYNENQ 195 (364)
T ss_pred HCHHHHHHHHHHcCCCCCCEEEEeccccccchHHHHHHHHHhcCC-CEEEEeC--CCCCCC---------cEEEeCCHHH
Confidence 788999999999999999987664 3455543 3467999 9999996 444433 7889999999
Q ss_pred HHHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEec
Q psy12143 109 AEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMER 156 (443)
Q Consensus 109 ~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~ 156 (443)
+.+++++.+.. ...++||+++. |+|+.+++..|.
T Consensus 196 l~~al~~a~~~-------------~~~vlVEefI~-GrEi~v~Vlg~~ 229 (364)
T PRK14570 196 IEKCIEEAFKY-------------DLTVVIEKFIE-AREIECSVIGNE 229 (364)
T ss_pred HHHHHHHHHhC-------------CCCEEEECCcC-CEEEEEEEECCC
Confidence 99999887642 14599999999 899999999764
No 71
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.79 E-value=8.6e-08 Score=102.95 Aligned_cols=168 Identities=21% Similarity=0.288 Sum_probs=117.5
Q ss_pred CHHHHHHHHHHCCCCCCCee--ecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHH
Q psy12143 37 HEHVSYTLLKEGGIPVPPFG--VAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAG 114 (443)
Q Consensus 37 ~e~~ak~lL~~~GIpv~~~~--~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~ 114 (443)
++..++.+..+.|+|+.|.. .+.+.+|+.+++++.|| ||.+|+. .||.|+ |.+++++++++.++++
T Consensus 121 dKv~Ar~~A~~agvPvipgt~~~~~~~ee~~~fa~~~gy-PvmiKA~--~GGGGR---------GMR~vr~~~~l~~~~~ 188 (1149)
T COG1038 121 DKVKARNAAIKAGVPVIPGTDGPIETIEEALEFAEEYGY-PVMIKAA--AGGGGR---------GMRVVRSEADLAEAFE 188 (1149)
T ss_pred cHHHHHHHHHHcCCCccCCCCCCcccHHHHHHHHHhcCC-cEEEEEc--cCCCcc---------ceeeecCHHHHHHHHH
Confidence 46679999999999997764 56789999999999999 9999996 444443 7999999999999998
Q ss_pred HHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCCCC
Q psy12143 115 KMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVG 194 (443)
Q Consensus 115 ~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~~~ 194 (443)
+..+... ..+|. ..|+||+++...+.+.+.+..|.. +..+-+|-.-+ ++++.+ .+++ -++|+..
T Consensus 189 ~AksEAk-----aAFG~--~eVyvEk~ve~pkHIEVQiLgD~~-GnvvHLfERDC-----SvQRRh-QKVV--E~APa~~ 252 (1149)
T COG1038 189 RAKSEAK-----AAFGN--DEVYVEKLVENPKHIEVQILGDTH-GNVVHLFERDC-----SVQRRH-QKVV--EVAPAPY 252 (1149)
T ss_pred HHHHHHH-----HhcCC--CcEEhhhhhcCcceeEEEEeecCC-CCEEEEeeccc-----chhhcc-ceeE--EecCCCC
Confidence 8755431 22443 689999999988999999999986 34444554222 223322 3554 3577777
Q ss_pred CCHHH-------HHHHHHHcCC-chhHHHHHHHHHHHHHhhhhC--CCeEEeeeceeE
Q psy12143 195 ITKEQ-------ALKVADAVGL-KAKRDITAEMLIKMYALFISK--DASLIEINPYAE 242 (443)
Q Consensus 195 l~~~~-------a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~~--~~~~lEINPl~v 242 (443)
++++. |.++.+..|+ ++-.- +...+. ....||+||.+.
T Consensus 253 L~~~~R~~ic~~Avkla~~~~Y~~AGTv----------EFLvd~~~~fyFIEvNPRiQ 300 (1149)
T COG1038 253 LSPELRDEICDDAVKLARNIGYINAGTV----------EFLVDEDGKFYFIEVNPRIQ 300 (1149)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCcccceE----------EEEEcCCCcEEEEEecCcee
Confidence 88864 3444455565 32111 112233 456799999875
No 72
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=98.78 E-value=3.6e-08 Score=111.45 Aligned_cols=94 Identities=21% Similarity=0.320 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEE-eCCHHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKM-VDTPEEAEEVAG 114 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l-~~s~ee~~~a~~ 114 (443)
-++..+|++|+++|||+|++..+++.+++.++++++|| |+|+||... +.| .||.+ ..|++++.++++
T Consensus 212 ~DK~~tk~lL~~~GIpvP~~~~~~s~~ea~~~~~~ig~-PvVVKP~~g--~~G---------~GV~l~v~s~~el~~a~~ 279 (864)
T TIGR02068 212 CDKDLTKEILSDAGVPVPEGTVVQSAEDAWEAAQDLGY-PVVIKPYDG--NHG---------RGVTINILTRDEIESAYE 279 (864)
T ss_pred cCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHcCC-CEEEEECCC--CCc---------cCEEEEeCCHHHHHHHHH
Confidence 67788999999999999999999999999999999998 999999743 223 37888 689999999988
Q ss_pred HHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEe
Q psy12143 115 KMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMME 155 (443)
Q Consensus 115 ~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D 155 (443)
.+... ...++||+|++ |.|+.+.+..+
T Consensus 280 ~a~~~-------------~~~vlVEefI~-G~e~rvlVv~~ 306 (864)
T TIGR02068 280 AAVEE-------------SSGVIVERFIT-GRDHRLLVVGG 306 (864)
T ss_pred HHHhh-------------CCcEEEEEecc-CCEEEEEEECC
Confidence 76432 14699999998 79999887644
No 73
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=98.76 E-value=3.7e-08 Score=100.17 Aligned_cols=93 Identities=19% Similarity=0.282 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGK 115 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~ 115 (443)
.++..+|++|+++|||+|++..+++.++.. .+.++| |+++||. .+|.++ ||.++.|.+|+.++++.
T Consensus 131 ~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~--~~~l~~-P~iVKP~--~~gsS~---------Gv~~v~~~~eL~~a~~~ 196 (343)
T PRK14568 131 MDKSLAYIVAKNAGIATPAFWTVTADERPD--AATLTY-PVFVKPA--RSGSSF---------GVSKVNSADELDYAIES 196 (343)
T ss_pred hCHHHHHHHHHHcCcCcCCEEEEECCchhh--hhhcCC-CEEEEeC--CCCCCC---------CEEEeCCHHHHHHHHHH
Confidence 678899999999999999999987655432 457899 9999996 444443 79999999999999887
Q ss_pred HhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEec
Q psy12143 116 MIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMER 156 (443)
Q Consensus 116 l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~ 156 (443)
.+.. ...++||+|++ |+|+.+++..+.
T Consensus 197 a~~~-------------~~~vlVEe~I~-G~E~sv~vl~~~ 223 (343)
T PRK14568 197 ARQY-------------DSKVLIEEAVV-GSEVGCAVLGNG 223 (343)
T ss_pred HHhc-------------CCcEEEECCcC-CEEEEEEEEcCC
Confidence 6432 14699999998 799999999764
No 74
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=98.74 E-value=9.4e-08 Score=101.43 Aligned_cols=104 Identities=16% Similarity=0.201 Sum_probs=77.7
Q ss_pred cCCCHHHHHHHHHHCCCCCC-CeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHH----
Q psy12143 34 LNVHEHVSYTLLKEGGIPVP-PFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEE---- 108 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~-~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee---- 108 (443)
..-++..+|++|+++|||+| ++..+++.+|+.++++.+ + |+|+||....+|+ ||.++.|.++
T Consensus 106 le~dK~~~K~~l~~~gIpt~~~~~~~~~~~ea~~~~~~~-~-PvVVKP~~~aggk-----------GV~iv~~~~e~~~~ 172 (486)
T PRK05784 106 IEKSKVWARELMWKYSIPGRLRYKVFYDVEEAAKFIEYG-G-SVAIKPARQAGGK-----------GVKVIADLQAYLSQ 172 (486)
T ss_pred HhcCHHHHHHHHHHcCcCCCccceEeCCHHHHHHHHhhc-C-CEEEeeCCCCCCC-----------CEEEECChhHhcch
Confidence 45678899999999999997 788899999999888765 6 9999998665544 7999988762
Q ss_pred -HH----HHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 109 -AE----EVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 109 -~~----~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
+. +++++++... . ..+.....++||+|+. |.|+++.+..|..
T Consensus 173 ~~~ea~~~a~~~~~~~~---~---~~g~~~~~VlIEEfL~-G~E~SV~al~dG~ 219 (486)
T PRK05784 173 EKREALTKSVNDIKEGS---A---YYKDVEPKILVEEKVD-GVEYTLQVLTDGE 219 (486)
T ss_pred hHHHHHHHHHHHHHHhH---h---hccCCCCeEEEEEccC-CeEEEEEEEECCC
Confidence 33 3444554321 0 0122235799999999 7899999998764
No 75
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=98.72 E-value=1.1e-07 Score=107.22 Aligned_cols=97 Identities=18% Similarity=0.230 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCC------HH-HHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKT------KK-EAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEE 108 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s------~~-ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee 108 (443)
.++..+|++|+++|||||+|..++. .+ +..++.+++|| |++|||. .+|.++ ||.++.+.+|
T Consensus 567 ~DK~~~K~~l~~~GIpt~~~~~~~~~~~~~~~~~~~~~~~~~lg~-P~iVKP~--~~GsS~---------Gv~~v~~~~e 634 (809)
T PRK14573 567 MDKVLTKRFASDVGVPVVPYQPLTLAGWKREPELCLAHIVEAFSF-PMFVKTA--HLGSSI---------GVFEVHNVEE 634 (809)
T ss_pred cCHHHHHHHHHHCCCCCCCEEEEechhcccChHHHHHHHHHhcCC-CEEEeeC--CCCCCC---------CEEEECCHHH
Confidence 7889999999999999999988863 22 23456778999 9999996 444443 8999999999
Q ss_pred HHHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 109 AEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 109 ~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
+.+++++++.. ...++||+++.+++|+.+++..|..
T Consensus 635 l~~a~~~a~~~-------------~~~vlVEe~i~~grEi~v~vl~~~~ 670 (809)
T PRK14573 635 LRDKISEAFLY-------------DTDVFVEESRLGSREIEVSCLGDGS 670 (809)
T ss_pred HHHHHHHHHhc-------------CCcEEEEeccCCCEEEEEEEEeCCC
Confidence 99999887532 1459999999888999999999864
No 76
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=98.71 E-value=9.3e-08 Score=105.12 Aligned_cols=95 Identities=23% Similarity=0.275 Sum_probs=75.6
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHc-CCCeEEEEEeecCCCCCccccccCccCcEEEeC---CHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKL-NIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVD---TPEEAEE 111 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~l-g~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~---s~ee~~~ 111 (443)
=++..+|++|+++|||||++..+++.+++.+....+ |+ |+||||. .++.|+ ||.+.. +.+++.+
T Consensus 474 ~DK~~TK~iL~~aGIPVP~g~~~~~~~~a~~~~~~~~g~-PVVVKP~--~g~~G~---------GVsi~~~~~~~eel~~ 541 (737)
T TIGR01435 474 ENKVVTKKVLAEAGFRVPFGDEFSSQALALEAFSLFENK-AIVVKPK--STNYGL---------GITIFKNGFTLEDFQE 541 (737)
T ss_pred cCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHhcCC-CEEEeeC--CCCCcC---------CeEEecCcCCHHHHHH
Confidence 378889999999999999999999988888777777 67 9999997 334444 677753 4788888
Q ss_pred HHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEec
Q psy12143 112 VAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMER 156 (443)
Q Consensus 112 a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~ 156 (443)
+++..+.. ...++||+|++ |.|+.+.|..+.
T Consensus 542 Al~~A~~~-------------~~~VLVEefI~-G~EyRv~VIg~k 572 (737)
T TIGR01435 542 ALNIAFSE-------------DSSVIIEEFLP-GTEYRFFVLNDK 572 (737)
T ss_pred HHHHHHhc-------------CCeEEEEeccc-CCEEEEEEECCe
Confidence 88765432 14699999998 899999888653
No 77
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=98.70 E-value=1e-07 Score=100.06 Aligned_cols=98 Identities=19% Similarity=0.283 Sum_probs=73.5
Q ss_pred cCCCHHHHHHHHHHCCCCCC-CeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeC----CHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVP-PFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVD----TPEE 108 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~-~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~----s~ee 108 (443)
..-++..+|++|.++|||+| .+..+.+.+|+..++.+++| |+|+||....+|| ||.++. +.++
T Consensus 102 ~e~dK~~~k~~l~~~gIptp~~~~~~~~~~e~~~~~~~~~~-PvVVKP~~~sggk-----------GV~v~~~~~~~~~e 169 (435)
T PRK06395 102 IETSKMFMRYLMERHNIPGNINFNACFSEKDAARDYITSMK-DVAVKPIGLTGGK-----------GVKVTGEQLNSVDE 169 (435)
T ss_pred HhhCHHHHHHHHHHCCcCCCcccceeCChHHHHHHHHhhCC-CEEEEeCCCCCCC-----------CeEEecCchhhHHH
Confidence 45678889999999999997 55577777888888888898 9999998666554 788873 3344
Q ss_pred HHHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 109 AEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 109 ~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
+.+++.+++.+ ...++||||+. |.|+++-+..|..
T Consensus 170 a~~~~~~~~~~-------------~~~viIEEfl~-G~E~Svd~~~dg~ 204 (435)
T PRK06395 170 AIRYAIEILDR-------------DGVVLIEKKMT-GEEFSLQAFSDGK 204 (435)
T ss_pred HHHHHHHHhCC-------------CCcEEEEeecC-CceEEEEEEEcCC
Confidence 44444443211 14699999998 7899999999865
No 78
>KOG0238|consensus
Probab=98.67 E-value=1.3e-07 Score=97.26 Aligned_cols=109 Identities=21% Similarity=0.352 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHCCCCCCCe--eecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHH
Q psy12143 37 HEHVSYTLLKEGGIPVPPF--GVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAG 114 (443)
Q Consensus 37 ~e~~ak~lL~~~GIpv~~~--~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~ 114 (443)
++..+|++++++|+|+.|+ ....|.+++.+.+.++|| ||.+|+. +||.|| |.+++.+++|.++.++
T Consensus 111 ~K~~sk~im~~AgVp~vpG~~g~~qs~e~~~~~a~eIgy-PvMiKa~--~GGGGk---------GMria~~~~ef~~~~~ 178 (670)
T KOG0238|consen 111 DKSTSKQIMKAAGVPLVPGYHGEDQSDEEAKKVAREIGY-PVMIKAT--AGGGGK---------GMRIAWSEEEFEEGLE 178 (670)
T ss_pred chHHHHHHHHhcCCccccCcccccccHHHHHHHHHhcCC-cEEEEec--cCCCCc---------ceEeecChHHHHHHHH
Confidence 3567999999999999876 467889999999999999 9999996 666666 7999999999888877
Q ss_pred HHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeec
Q psy12143 115 KMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIAS 166 (443)
Q Consensus 115 ~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g 166 (443)
...... ...+| .+++|+|+|+...+.+.+.+..|.. |-.+-++
T Consensus 179 ~ak~Ea-----~~sFG--dd~~llEkfi~npRHiEvQv~gD~h--Gnav~l~ 221 (670)
T KOG0238|consen 179 SAKQEA-----AKSFG--DDGMLLEKFIDNPRHIEVQVFGDKH--GNAVHLG 221 (670)
T ss_pred HHHHHH-----HhhcC--cchhhHHHhccCCceEEEEEEecCC--CcEEEec
Confidence 653322 11234 4799999999988999999999984 6666554
No 79
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=98.61 E-value=2.2e-07 Score=103.22 Aligned_cols=92 Identities=24% Similarity=0.288 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHc-CCCeEEEEEeecCCCCCccccccCccCcEEEe---CCHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKL-NIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMV---DTPEEAEE 111 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~l-g~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~---~s~ee~~~ 111 (443)
-++..+|++|+++|||+|++.++.+.+++.+..+++ || |+|+||.. ++.|+ ||.+. .+.+++.+
T Consensus 487 ~DK~~tk~lL~~~GIpvP~~~~~~~~e~a~~~~~~~~g~-PvVVKP~~--g~~G~---------GV~~~~~~~~~eel~~ 554 (752)
T PRK02471 487 ENKVVTKKILAEAGFPVPAGDEFTSLEEALADYSLFADK-AIVVKPKS--TNFGL---------GISIFKEPASLEDYEK 554 (752)
T ss_pred hCHHHHHHHHHHCCcCCCCEEEEcCHHHHHHHHHHhcCC-CEEEEECC--CCCcC---------CeEEecCcCCHHHHHH
Confidence 478899999999999999999999999988877764 88 99999973 33343 67664 57888988
Q ss_pred HHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEE
Q psy12143 112 VAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFM 153 (443)
Q Consensus 112 a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~ 153 (443)
+++.++.. ...++||+|++ |.|+.+.|.
T Consensus 555 A~~~a~~~-------------~~~vlVEEfI~-G~E~Rv~Vi 582 (752)
T PRK02471 555 ALEIAFRE-------------DSSVLVEEFIV-GTEYRFFVL 582 (752)
T ss_pred HHHHHHhc-------------CCcEEEEeccc-CCEEEEEEE
Confidence 88876432 14699999998 899998877
No 80
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=98.56 E-value=3.7e-07 Score=89.35 Aligned_cols=91 Identities=21% Similarity=0.255 Sum_probs=72.9
Q ss_pred HHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHHHhhchhhhh
Q psy12143 45 LKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDYLITK 124 (443)
Q Consensus 45 L~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~l~~~~~~~~ 124 (443)
-++.|+||.+|+++.|.+|..++++.+|| |+|+||.....||| -.++++++++.++|+......
T Consensus 122 AeeLglpTs~Y~fa~s~~e~~~a~~~iGf-PcvvKPvMSSSGkG-----------qsvv~~~e~ve~AW~~A~~g~---- 185 (394)
T COG0027 122 AEELGLPTSKYRFADSLEELRAAVEKIGF-PCVVKPVMSSSGKG-----------QSVVRSPEDVEKAWEYAQQGG---- 185 (394)
T ss_pred HHHhCCCCccccccccHHHHHHHHHHcCC-CeecccccccCCCC-----------ceeecCHHHHHHHHHHHHhcC----
Confidence 34579999999999999999999999999 99999975554553 347899999999999765422
Q ss_pred hcCCCCcccCeEEEEeeeCCCeeeEEEEEEec
Q psy12143 125 QTGEKGRICNAVMVTERKYPRKEYYFAFMMER 156 (443)
Q Consensus 125 ~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~ 156 (443)
.+. ...|+||+++++..|+++-..+.-
T Consensus 186 ----R~~-~~RVIVE~fv~fd~EiTlLtvr~~ 212 (394)
T COG0027 186 ----RGG-SGRVIVEEFVKFDFEITLLTVRAV 212 (394)
T ss_pred ----CCC-CCcEEEEEEecceEEEEEEEEEEe
Confidence 122 368999999999899887766643
No 81
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=98.54 E-value=7.6e-07 Score=87.44 Aligned_cols=101 Identities=18% Similarity=0.202 Sum_probs=75.2
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
...++...+++|+++|||+|++..+.+.+++.++.+.+|| |+|+||.... .|+ ||.+..+.+++.+++
T Consensus 84 ~~~dK~~~~~~l~~~gip~P~t~~~~~~~~~~~~~~~~~~-P~vvKP~~g~--~g~---------gv~~v~~~~~l~~~~ 151 (280)
T TIGR02144 84 ACGDKIFTYLKLAKAGVPTPRTYLAFDREAALKLAEALGY-PVVLKPVIGS--WGR---------LVALIRDKDELESLL 151 (280)
T ss_pred HHhhHHHHHHHHHHCCcCCCCeEeeCCHHHHHHHHHHcCC-CEEEEECcCC--CcC---------CEEEECCHHHHHHHH
Confidence 3466777899999999999999999999999888889998 9999996332 222 688889999887765
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCC-CeeeEEEEEEe
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYP-RKEYYFAFMME 155 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~-g~El~vgv~~D 155 (443)
+..... .+.....+++|+|+++ +.|+.+.+..+
T Consensus 152 ~~~~~~---------~~~~~~~~ivQefI~~~~~d~~v~vig~ 185 (280)
T TIGR02144 152 EHKEVL---------GGSQHKLFYIQEYINKPGRDIRVFVIGD 185 (280)
T ss_pred HHHHhh---------cCCcCCeEEEEcccCCCCCceEEEEECC
Confidence 432110 0001246999999974 78888877644
No 82
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=98.49 E-value=1.4e-06 Score=85.03 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=74.3
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
...++...+++|+++|||+|++..+.+.+++.++.++++| |+|+||.... .|+ ||.+..+.+++.+++
T Consensus 85 ~~~dK~~~~~~l~~~gi~~P~t~~~~~~~~~~~~~~~~~~-p~vvKP~~g~--~g~---------gv~~i~~~~~l~~~~ 152 (277)
T TIGR00768 85 NAGDKFLTSQLLAKAGLPQPRTGLAGSPEEALKLIEEIGF-PVVLKPVFGS--WGR---------LVSLARDKQAAETLL 152 (277)
T ss_pred HHhhHHHHHHHHHHCCCCCCCEEEeCCHHHHHHHHHhcCC-CEEEEECcCC--CCC---------ceEEEcCHHHHHHHH
Confidence 3467778899999999999999999999999999999998 9999997432 232 788889999988776
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCC--eeeEEEEE
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPR--KEYYFAFM 153 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g--~El~vgv~ 153 (443)
+.+... +.....+++|+|+++. .++.+.+.
T Consensus 153 ~~~~~~----------~~~~~~~lvQe~I~~~~~~~~rv~v~ 184 (277)
T TIGR00768 153 EHFEQL----------NGPQNLFYVQEYIKKPGGRDIRVFVV 184 (277)
T ss_pred HHHHHh----------cccCCcEEEEeeecCCCCceEEEEEE
Confidence 654221 0001469999999853 46666554
No 83
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=98.49 E-value=8.9e-07 Score=95.47 Aligned_cols=93 Identities=20% Similarity=0.345 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEE-eCCHHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKM-VDTPEEAEEVAG 114 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l-~~s~ee~~~a~~ 114 (443)
-++..+|++|+++|||+|++..+.+.+++.++++++| |+|+||. .|+.|+ ||.+ ..+++++.++++
T Consensus 296 ~DK~~tk~lL~~aGIpVP~~~~~~~~~~~~~~~~~~G--~vVVKP~--~G~~G~---------Gv~v~v~~~~eL~~a~~ 362 (547)
T TIGR03103 296 DDKRLTRRLVSEAGLQVPEQQLAGNGEAVEAFLAEHG--AVVVKPV--RGEQGK---------GISVDVRTPDDLEAAIA 362 (547)
T ss_pred cCHHHHHHHHHHcCcCCCCEEEECCHHHHHHHHHHhC--CEEEEEC--CCCCCc---------CeEEecCCHHHHHHHHH
Confidence 4788899999999999999999999999999999997 6999996 344443 7887 689999999888
Q ss_pred HHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEe
Q psy12143 115 KMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMME 155 (443)
Q Consensus 115 ~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D 155 (443)
..... ...++||+|++ |.|+.+.|..+
T Consensus 363 ~a~~~-------------~~~vlvEe~i~-G~d~Rv~Vigg 389 (547)
T TIGR03103 363 KARQF-------------CDRVLLERYVP-GEDLRLVVIDF 389 (547)
T ss_pred HHHhc-------------CCcEEEEEecc-CCeEEEEEECC
Confidence 76432 14699999998 78888877644
No 84
>PRK06849 hypothetical protein; Provisional
Probab=98.48 E-value=5.1e-07 Score=93.22 Aligned_cols=93 Identities=15% Similarity=0.054 Sum_probs=64.9
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHc-CCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKL-NIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEV 112 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~l-g~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a 112 (443)
+..+++..++++++.|||+|++..+++.+++.++..+. || |+|+||....++ .||.+..+.+++
T Consensus 113 ~~~DK~~~~~~~~~~GipvP~t~~v~~~~~l~~~~~~~~~~-P~vlKP~~~~~~-----------~~v~~~~~~~~l--- 177 (389)
T PRK06849 113 LLHNKWEFAEQARSLGLSVPKTYLITDPEAIRNFMFKTPHT-PYVLKPIYSRFV-----------RRVDLLPKEAAL--- 177 (389)
T ss_pred HhhCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHhhcCCCC-cEEEEeCcccCC-----------CeEEEecCHHHh---
Confidence 44778889999999999999999999999998887776 88 999999633222 367666563322
Q ss_pred HHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeee-EEEEEEe
Q psy12143 113 AGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEY-YFAFMME 155 (443)
Q Consensus 113 ~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El-~vgv~~D 155 (443)
+.+.. . ....++||+|++ |.|+ ..++.+|
T Consensus 178 -~~~~~-----------~-~~~~~ivQe~I~-G~e~~~~~~~~~ 207 (389)
T PRK06849 178 -KELPI-----------S-KDNPWVMQEFIQ-GKEYCSYSIVRS 207 (389)
T ss_pred -ccccc-----------C-CCCCeEEEEEec-CCeEEEEEEEEC
Confidence 11110 0 013599999999 4554 4455444
No 85
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=2.1e-06 Score=86.33 Aligned_cols=97 Identities=25% Similarity=0.341 Sum_probs=69.8
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHH-HHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHH-HHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIA-KKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPE-EAEEV 112 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a-~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~e-e~~~a 112 (443)
.-++..+-++|.+.|+|+|++.+..+.+++.... +.+|| |+|+||..-.+ |+ ||.++.+.+ ++.+.
T Consensus 117 ~~nK~~~~~~l~~~~ipvP~T~i~~~~~~~~~~~~~~~g~-pvVlKp~~Gs~--G~---------gV~~v~~~d~~l~~~ 184 (318)
T COG0189 117 CRNKLYTTQLLAKAGIPVPPTLITRDPDEAAEFVAEHLGF-PVVLKPLDGSG--GR---------GVFLVEDADPELLSL 184 (318)
T ss_pred hhhHHHHHHHHHhcCCCCCCEEEEcCHHHHHHHHHHhcCC-CEEEeeCCCCC--cc---------ceEEecCCChhHHHH
Confidence 3556778899999999999999999986665554 56678 99999963333 33 788888877 78777
Q ss_pred HHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEe
Q psy12143 113 AGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMME 155 (443)
Q Consensus 113 ~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D 155 (443)
.+.+.+.. -.-+++|+|++.....+..+...
T Consensus 185 ~e~~~~~~------------~~~~ivQeyi~~~~~~~rrivv~ 215 (318)
T COG0189 185 LETLTQEG------------RKLIIVQEYIPKAKRDDRRVLVG 215 (318)
T ss_pred HHHHhccc------------cceEehhhhcCcccCCcEEEEEe
Confidence 77664321 13599999998655444444443
No 86
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=98.33 E-value=6.2e-06 Score=84.17 Aligned_cols=100 Identities=21% Similarity=0.359 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGK 115 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~ 115 (443)
-+....|++|+++|||+|++ +.+.++ ++| |+|+||....+ |+ |+.++.|.+|+.+++++
T Consensus 122 ~dK~~~k~~L~~aGIp~p~~--~~~~~~-------i~~-PvIVKp~~g~g--gk---------Gv~i~~s~~El~~~~~~ 180 (358)
T PRK13278 122 ADRDKERKLLEEAGIRIPRK--YESPED-------IDR-PVIVKLPGAKG--GR---------GYFIAKSPEEFKEKIDK 180 (358)
T ss_pred cCHHHHHHHHHHcCCCCCCE--eCCHHH-------cCC-CEEEEeCCCCC--CC---------CeEEeCCHHHHHHHHHH
Confidence 44666889999999999985 555543 577 99999953333 33 79999999999999998
Q ss_pred HhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeec
Q psy12143 116 MIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIAS 166 (443)
Q Consensus 116 l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g 166 (443)
++.+.. .+. .+.++||+|+. |.|+++-+...|.. |-+-++|
T Consensus 181 l~~~~~-------~~~-~~~~iIEEfI~-G~e~sv~~f~s~~~-~~~e~l~ 221 (358)
T PRK13278 181 LIERGL-------ITE-VEEAIIQEYVV-GVPYYFHYFYSPIK-NRLELLG 221 (358)
T ss_pred HHhccc-------cCC-CCeEEEEecCC-CcEEEEEEEEeccC-CeEEEEe
Confidence 865321 122 46899999998 88999998887642 4443333
No 87
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=98.28 E-value=4.2e-06 Score=84.34 Aligned_cols=164 Identities=23% Similarity=0.340 Sum_probs=103.7
Q ss_pred ccCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCC--eEEEEEeecCCCCCccccccCccCcEEEeC-CHHHH
Q psy12143 33 NLNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIK--DIVLKAQVLAGGRGKGAFKGGLKGGVKMVD-TPEEA 109 (443)
Q Consensus 33 ~~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~--PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~-s~ee~ 109 (443)
...-++....+.+++.|||+|++..++|.+|..++.++++++ |+.+||..-.+|+ |.++.+ +.+++
T Consensus 103 ~~~~dK~~~y~~~~~~~ipvp~~~~v~t~~el~~a~~~l~~~~~~~CvKP~~g~gg~-----------GFr~l~~~~~~l 171 (329)
T PF15632_consen 103 ELADDKAAFYEFMEANGIPVPPYWRVRTADELKAAYEELRFPGQPLCVKPAVGIGGR-----------GFRVLDESRDEL 171 (329)
T ss_pred HHHhhHHHHHHHHHhCCCCCCCEEEeCCHHHHHHHHHhcCCCCceEEEecccCCCcc-----------eEEEEccCcchH
Confidence 345667888899999999999999999999999999998772 4999997544443 677764 55554
Q ss_pred HHHHH---------HHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEE-eecCCCCcchhccccc
Q psy12143 110 EEVAG---------KMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVL-IASSQGGVNIEEVAAE 179 (443)
Q Consensus 110 ~~a~~---------~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv-~~g~~GGv~vE~l~~~ 179 (443)
....+ ++.... + ........+|.+|++ |.|++|=+..+. |-++ .++..-
T Consensus 172 ~~l~~~~~~~i~~~~~~~~l---~----~~~~~~~llvMeyL~-G~EySVD~l~~~---G~viaaV~R~K---------- 230 (329)
T PF15632_consen 172 DALFEPDSRRISLDELLAAL---Q----RSEEFPPLLVMEYLP-GPEYSVDCLADE---GRVIAAVPRRK---------- 230 (329)
T ss_pred HHhcCCCcceeCHHHHHHHH---h----ccCCCCCcEEecCCC-CCeEEEEEEecC---CEEEEEEEEEe----------
Confidence 44322 111111 0 112357899999999 999999999987 4443 333110
Q ss_pred CCCeEEEEecCCCCCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHHHhhhh--CCCeEEeeeceeE
Q psy12143 180 NPSAILYEPVDITVGITKEQALKVADAVGL-KAKRDITAEMLIKMYALFIS--KDASLIEINPYAE 242 (443)
Q Consensus 180 ~~d~v~~~~l~p~~~l~~~~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~--~~~~~lEINPl~v 242 (443)
. -....+.-.+ --.+.|+++.+.+|+ |.-.- |.-.+ ....+|||||.+-
T Consensus 231 ~-G~~q~l~~~~---~l~e~a~~l~~~~~l~g~~Ni----------Q~r~d~~g~p~LLEINpR~s 282 (329)
T PF15632_consen 231 L-GRRQVLENDE---ELIELARRLAEAFGLDGLFNI----------QFRYDEDGNPKLLEINPRPS 282 (329)
T ss_pred c-CceeEEEECH---HHHHHHHHHHHHhCCCceEEE----------EEEEcCCCCEEEEEeCCCCc
Confidence 0 0111111122 223467778888876 42111 11122 2357899999864
No 88
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=98.21 E-value=2e-05 Score=69.78 Aligned_cols=117 Identities=20% Similarity=0.285 Sum_probs=72.3
Q ss_pred CcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHH
Q psy12143 296 GSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAA 375 (443)
Q Consensus 296 g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~ 375 (443)
|+|+++|-||+++....+.+...|.-..-.+-++.+++. .+.+.++.+.+||++++|++++-+ +.+. +...+++
T Consensus 2 G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv-~~~d~l~~~~~D~~t~~I~ly~E~-~~d~----~~f~~~~ 75 (138)
T PF13607_consen 2 GGVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADV-DFADLLEYLAEDPDTRVIVLYLEG-IGDG----RRFLEAA 75 (138)
T ss_dssp -SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS--HHHHHHHHCT-SS--EEEEEES---S-H----HHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccC-CHHHHHHHHhcCCCCCEEEEEccC-CCCH----HHHHHHH
Confidence 789999999999999999999998544444444444432 388999999999999999987653 3333 3444445
Q ss_pred HHcCCCCcEEEEeCCC-----------------CHHHHHHHHHHCCCCcccCCCHHHHHHHH
Q psy12143 376 QELSLKIPIICRLQGT-----------------NVDDAKVLIASAAMKILPCDNLDEAARLA 420 (443)
Q Consensus 376 ~~~~~~kpiv~~~~g~-----------------~~~~~~~~L~~~GiP~~~f~s~e~Av~al 420 (443)
++....||||+.-.|. +.......|++.|+-. .+++++-+...
T Consensus 76 ~~a~~~KPVv~lk~Grt~~g~~aa~sHTgslag~~~~~~a~~~~aGv~~--v~~~~el~~~~ 135 (138)
T PF13607_consen 76 RRAARRKPVVVLKAGRTEAGARAAASHTGSLAGDDAVYDAALRQAGVVR--VDDLDELLDAA 135 (138)
T ss_dssp HHHCCCS-EEEEE---------------------HHHHHHHHHHCTEEE--ESSHHHHHHHH
T ss_pred HHHhcCCCEEEEeCCCchhhhhhhhccCCcccCcHHHHHHHHHHcCceE--ECCHHHHHHHH
Confidence 5443459999865542 1122245889999876 78888766543
No 89
>KOG0370|consensus
Probab=98.06 E-value=2.1e-06 Score=93.81 Aligned_cols=160 Identities=21% Similarity=0.270 Sum_probs=114.3
Q ss_pred HHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHHHhhchhh
Q psy12143 43 TLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDYLI 122 (443)
Q Consensus 43 ~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~l~~~~~~ 122 (443)
+-|.+.+.+..++..+++.+|+.++++++|| ||++.+...-||-| -.+..+.+|+.+.+.+.+..
T Consensus 504 ~am~ei~e~ia~s~a~~sie~al~aae~l~y-pvivRaayalgglg-----------Sgfa~n~eeL~~l~~~a~a~--- 568 (1435)
T KOG0370|consen 504 RALNEINEKIAPSEAVSTIEEALEAAERLGY-PVIVRAAYALGGLG-----------SGFANNEEELQDLAAQALAL--- 568 (1435)
T ss_pred HHHHhhcccccchhhHhHHHHHHHHHHhcCc-HHHHHHHHHhcCcc-----------ccccccHHHHHHHHhhcccc---
Confidence 3466779999999999999999999999999 99999865545443 33678999998887776543
Q ss_pred hhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCCCCCCHHH---
Q psy12143 123 TKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQ--- 199 (443)
Q Consensus 123 ~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~~~l~~~~--- 199 (443)
-..+|||+.+.+++|+..-+.||.. +-++.+|.+- ..+.+.-+..|+++ ++|.+.++.++
T Consensus 569 ----------s~QilvekSlkGwkevEyevvrDa~--~nciTvcnme--n~DplgihtGdSiV---vapsqtlsd~ey~m 631 (1435)
T KOG0370|consen 569 ----------SPQILVEKSLKGWKEVEYEVVRDAY--DNCITVCNME--NFDPLGIHTGDSIV---VAPSQTLSDEEYQM 631 (1435)
T ss_pred ----------CceeeehhhhccccceEEEEEeccc--cchhhhcCCc--ccCcceeeccceEE---EeeccccChHHHHH
Confidence 2579999999999999999999985 5667777432 22344555566653 57877777653
Q ss_pred ----HHHHHHHcCC-chhHHHHHHHHHHHHHhh-hhCCCeEEeeeceeE
Q psy12143 200 ----ALKVADAVGL-KAKRDITAEMLIKMYALF-ISKDASLIEINPYAE 242 (443)
Q Consensus 200 ----a~~~l~~lg~-g~d~~~l~~~l~~l~~l~-~~~~~~~lEINPl~v 242 (443)
|...+++||+ |.+..+.+ +- ...+...||+|-.+-
T Consensus 632 lrttaikVirhlgvvGEcniQya--------L~p~s~~y~IiEVNarLS 672 (1435)
T KOG0370|consen 632 LRTTAIKVIRHLGVVGECNIQYA--------LNPYSLEYRIIEVNARLS 672 (1435)
T ss_pred HHhcchhheeccCCcccccceee--------ecccceeEEEEEEEeEEe
Confidence 4455667787 77664443 10 112445789996554
No 90
>PLN02522 ATP citrate (pro-S)-lyase
Probab=97.99 E-value=8e-05 Score=80.53 Aligned_cols=129 Identities=13% Similarity=0.178 Sum_probs=96.1
Q ss_pred CCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHH
Q psy12143 295 DGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAA-QVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIA 373 (443)
Q Consensus 295 ~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~~-~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~ 373 (443)
.|+||+||-||+++....|.+...|.-..--+-+++++... .+.+.++.+.+||++++|++..--++.+....++.+
T Consensus 167 pG~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e~~f~ea~-- 244 (608)
T PLN02522 167 PGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEYSLVEAL-- 244 (608)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecCchhHHHHHHHH--
Confidence 68899999999999999999999996666677788877632 489999999999999999986653444444444443
Q ss_pred HHHHcCCCCcEEEEeCCCCH-----------------------HHHHHHHHHCCCCcccCCCHHHHHHHHHH-HHHHHhH
Q psy12143 374 AAQELSLKIPIICRLQGTNV-----------------------DDAKVLIASAAMKILPCDNLDEAARLAVK-LSSIVGL 429 (443)
Q Consensus 374 ~~~~~~~~kpiv~~~~g~~~-----------------------~~~~~~L~~~GiP~~~f~s~e~Av~al~~-l~~~~~~ 429 (443)
++...+||||++..|... ..-...|+++|+.+ .+++++-...+.. +-+++.+
T Consensus 245 --~~a~~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv~v--v~s~~El~~~~~~~~~~~~~~ 320 (608)
T PLN02522 245 --KQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGAIV--PTSFEALEAAIKETFEKLVEE 320 (608)
T ss_pred --HHhcCCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCCeE--eCCHHHHHHHHHHHHHHHHhC
Confidence 332257999987654422 12346899999998 8999998888765 4555543
No 91
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=97.98 E-value=0.00014 Score=72.92 Aligned_cols=123 Identities=15% Similarity=0.236 Sum_probs=90.6
Q ss_pred CCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCH-HHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHH
Q psy12143 295 DGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATA-AQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIA 373 (443)
Q Consensus 295 ~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~-~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~ 373 (443)
.|+|+++|-||+++...++.+...|.-..-.+-+++++.. -.+.++|+.+.+||++++|+++.-.+... +.-+...++
T Consensus 169 ~G~VgiVSqSGtl~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~-e~~aa~fi~ 247 (317)
T PTZ00187 169 KGKIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGEIGGTA-EEEAAEWIK 247 (317)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEEEEeCCCCCCCCCHHHHHHHHhhCCCccEEEEEEecCCch-hHHHHHHHH
Confidence 6889999999999999999999999777788888888732 24899999999999999999865433222 222233333
Q ss_pred HHHHcCCCCcEEEEeCCCCH--------------------HHHHHHHHHCCCCcccCCCHHHHHHHHHHH
Q psy12143 374 AAQELSLKIPIICRLQGTNV--------------------DDAKVLIASAAMKILPCDNLDEAARLAVKL 423 (443)
Q Consensus 374 ~~~~~~~~kpiv~~~~g~~~--------------------~~~~~~L~~~GiP~~~f~s~e~Av~al~~l 423 (443)
. ...+||||++..|... ..-...|++.|+++ .+++++-.+.+...
T Consensus 248 ~---~~~~KPVVa~~aGrsap~G~r~gHaGAi~~~~~G~~~~k~aal~qaGv~v--~~~~~el~~~~~~~ 312 (317)
T PTZ00187 248 N---NPIKKPVVSFIAGITAPPGRRMGHAGAIISGGKGTAPGKIEALEAAGVRV--VKSPAQLGKTMLEV 312 (317)
T ss_pred h---hcCCCcEEEEEecCCCCCCCcccchhhhhccCCCCHHHHHHHHHHCCCeE--eCCHHHHHHHHHHH
Confidence 2 1247999976543321 12245799999998 89999888877654
No 92
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=97.89 E-value=0.00012 Score=73.62 Aligned_cols=97 Identities=15% Similarity=0.206 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCC----HHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKT----KKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAE 110 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s----~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~ 110 (443)
..+...+|.+++..|+|++++..++. ....++..+.++| |++|||. ..|.+. |+..+.+.++.+
T Consensus 101 ~mdk~~~K~~~~~~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~-p~~Vkp~--~~gSSv---------g~~~v~~~~d~~ 168 (317)
T COG1181 101 AMDKIVTKRLFKAEGLPVAPYVALTRDEYSSVIVEEVEEGLGF-PLFVKPA--REGSSV---------GRSPVNVEGDLQ 168 (317)
T ss_pred cccHHHHHHHHHHCCCCccceeeeecccchhHHHHHhhcccCC-CEEEEcC--Ccccee---------eEEEeeeccchH
Confidence 46678899999999999999988863 2334567778999 9999996 333322 666778888888
Q ss_pred HHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 111 EVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 111 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
.+.+..+.. .+.+++|+++. ++|+.+++..+..
T Consensus 169 ~~~e~a~~~-------------d~~vl~e~~~~-~rei~v~vl~~~~ 201 (317)
T COG1181 169 SALELAFKY-------------DRDVLREQGIT-GREIEVGVLGNDY 201 (317)
T ss_pred HHHHHHHHh-------------CCceeeccCCC-cceEEEEecCCcc
Confidence 876666543 25799999999 9999999999844
No 93
>KOG1254|consensus
Probab=97.80 E-value=5.3e-06 Score=85.25 Aligned_cols=285 Identities=15% Similarity=0.092 Sum_probs=169.6
Q ss_pred eEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCC------Ceee
Q psy12143 75 DIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYP------RKEY 148 (443)
Q Consensus 75 PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~------g~El 148 (443)
..|.|++.....+++. |-|.++.+-.+..++.+.+.... .+.++ .- .+..-+.||+++++ ..|.
T Consensus 81 rsv~k~~m~~~k~~ki-------~lvAiiAegvpe~~~~kl~~~a~-~k~~~-ii-GPaTvggVePg~fkignt~g~~dn 150 (600)
T KOG1254|consen 81 RSVAKPDMLALKRGKI-------GLVAIIAEGVPEADTRKLRAGAE-VKGVG-II-GPATVGGVEPGVFKIGNTGGMMDN 150 (600)
T ss_pred hhhhcchHHHhhcCcc-------eEEEEEecCCcHHHHHHHHhccc-cccce-EE-eeeeeccccCCccccCCCCcchhh
Confidence 5788887766666665 77888755444444444444332 11111 11 23456899999975 5799
Q ss_pred EEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCCCC----CCHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q psy12143 149 YFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVG----ITKEQALKVADAVGLKAKRDITAEMLIKMY 224 (443)
Q Consensus 149 ~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~~~----l~~~~a~~~l~~lg~g~d~~~l~~~l~~l~ 224 (443)
|+.+..++. |.++.||..||+++|.-.+. +.+. .-|-.+ =+.+-..-+++++- -...+.+.++++.|+
T Consensus 151 il~~klyR~--Gsv~~vS~sGGmsnE~nn~i----srtt-~g~~egiaiggd~~pgSTl~dhi~-r~q~~~~vk~Iv~Lg 222 (600)
T KOG1254|consen 151 ILNSKLYRP--GSVIYVSRSGGMSNELNNII----SRTT-DGPYEGIAIGGDRYPGSTLIDHIP-REQHDPLVKFIVVLG 222 (600)
T ss_pred hhhhcccCC--ccEEEEecCCCcchhhhhhh----hhee-ccceeeeeccCCCccCchHhhhhh-hhhccChhheEEeeh
Confidence 999999996 89999999999999986532 1111 111110 01111222333221 124455778889999
Q ss_pred HhhhhCCCeEEeee-------ceeEccCCC---EEEEeEEEEecCcchhhhhh-hhccc----CCccCCHHH--------
Q psy12143 225 ALFISKDASLIEIN-------PYAEDATGN---FFGLDAKMRFDDNAEFRQKA-LFDLR----DWSQEDAKE-------- 281 (443)
Q Consensus 225 ~l~~~~~~~~lEIN-------Pl~v~~~g~---~~alDa~i~l~~~a~~rqp~-i~~~~----~~~~~~~~e-------- 281 (443)
.++-+++.+.+|+| |+++...|. .+-+|.+...++.+.|.+.. |..-+ +.-...+++
T Consensus 223 evgg~~ey~~~e~~k~g~~tkPlVaw~~gtcA~~F~~evqfghagtaa~~~~eka~akn~al~~ag~~vpesf~~l~~~i 302 (600)
T KOG1254|consen 223 EVGGDEEYTFLEANKEGKITKPLVAWCIGTCADMFPLEVQFGHAGTAAFKNGEKAAAKNQALRDAGATVPESFDALGADI 302 (600)
T ss_pred hhcccceeehhhhhhcCCccCCEEEEecCccccccchhhhccccchhhhcchhhhhhcchhhhhccccCccchhhhhhhh
Confidence 99999999999999 999887662 46788888888877665532 21000 000000111
Q ss_pred --------------------------HHHhcCCCeEeecCCcEEEEEcch-hHHHHHHHHHHHcCC--CCCCeeeecCCC
Q psy12143 282 --------------------------VEAAKHSLNYIALDGSIGCLVNGA-GLAMATMDIIKLHGG--EPANFLDVGGGA 332 (443)
Q Consensus 282 --------------------------~~a~~~~l~~~~~~g~iaiitngG-G~g~la~D~~~~~G~--~~~NPvDl~g~~ 332 (443)
..+.+..|..++..++++....+| |..+.++|+-...|. ..+|.=.+++-+
T Consensus 303 ~~~~e~lv~~Grvvp~~Ev~pp~lp~d~saalklgllr~p~~i~t~Ia~~rGaeviYA~~p~~~~~a~elG~gg~~Sllw 382 (600)
T KOG1254|consen 303 QETYEFLVPFGRVVPKTEVPPPGLPEDTSAALKLGLLRKPGRIWTSIAGGRGAEVIYADVPISLGYASELGNGGVYSLLW 382 (600)
T ss_pred ccchhcccccceecCcccCCCCCCChhhhhHhhhccccCCceEEEEecCCCCceeeecCchhhhhhHhhccccceEcccc
Confidence 111122244445568876655555 999999999988885 368888888888
Q ss_pred CHHH---H-HHHHHHHH-cCCCccEEEEEccCCC---CChHHHHHHHHHHHHH
Q psy12143 333 TAAQ---V-KEAFKIIT-ADPKVCAIMVNIFGGI---MRCDVIAEGIIAAAQE 377 (443)
Q Consensus 333 ~~~~---~-~~al~~ll-~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~~~ 377 (443)
.... | .+.++.++ -+|+-+.-+..+.+++ +...+....|++.+.+
T Consensus 383 ~~~~lp~Ya~kfie~~~m~~aDhgp~Vsga~ntI~~~ra~kdl~sslv~gLlt 435 (600)
T KOG1254|consen 383 FQRRLPQYARKFIEICTMLTADHGPAVSGAGNTIANFRAGKDLFSSLVRGLLT 435 (600)
T ss_pred ccccchHHHHHHHHHHhhccCCCCceeEeccCceEEeccHHHHHHHHHHHHhh
Confidence 7654 3 56677776 4444443333234444 2234445555555443
No 94
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=97.79 E-value=0.00042 Score=68.94 Aligned_cols=123 Identities=16% Similarity=0.241 Sum_probs=87.2
Q ss_pred CCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHH
Q psy12143 295 DGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAA-QVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIA 373 (443)
Q Consensus 295 ~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~~-~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~ 373 (443)
.|+|+++|-||+++...+|.+...|.-..-.+-++..++.+ .+.+.++.+.+||++++|++++-+........++-
T Consensus 145 ~G~valiSQSGal~~~~~~~~~~~giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~a~~~--- 221 (291)
T PRK05678 145 KGRVGVVSRSGTLTYEAVAQLTDLGFGQSTCVGIGGDPINGTNFIDVLEAFEEDPETEAIVMIGEIGGSAEEEAAEY--- 221 (291)
T ss_pred CCCEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCcHHHHHHHH---
Confidence 68899999999999999999999997666777777664422 37889999999999999998765432211222222
Q ss_pred HHHHcCCCCcEEEEeCCCCH--------------------HHHHHHHHHCCCCcccCCCHHHHHHHHHHHH
Q psy12143 374 AAQELSLKIPIICRLQGTNV--------------------DDAKVLIASAAMKILPCDNLDEAARLAVKLS 424 (443)
Q Consensus 374 ~~~~~~~~kpiv~~~~g~~~--------------------~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~ 424 (443)
++.. .+||||+.-.|..+ ......|++.|+.. .+++++....+..+.
T Consensus 222 -~~~~-~~KPVV~lk~Grs~~~g~~~sHTGala~~~~g~~~~~~a~~~q~Gvi~--v~~~~el~~~~~~~~ 288 (291)
T PRK05678 222 -IKAN-VTKPVVGYIAGVTAPPGKRMGHAGAIISGGKGTAEEKKEALEAAGVKV--ARTPSEIGELLKEVL 288 (291)
T ss_pred -HHHc-CCCCEEEEEecCCCCCCCcccchhhhccCCCCCHHHHHHHHHHCCCeE--CCCHHHHHHHHHHHH
Confidence 2221 37999975433311 11235799999988 899998888776654
No 95
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=97.78 E-value=0.00039 Score=68.97 Aligned_cols=121 Identities=13% Similarity=0.235 Sum_probs=85.3
Q ss_pred CCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHH
Q psy12143 295 DGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAA-QVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIA 373 (443)
Q Consensus 295 ~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~~-~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~ 373 (443)
.|+|++||-||+++...+|.+...|.-..-.+-++.+++.+ .+.+.++.+.+||++++|++++-+......+.++.
T Consensus 143 ~G~ValiSQSG~l~~~~~~~a~~~giG~S~~Vs~Gn~a~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~~~~~--- 219 (286)
T TIGR01019 143 PGNVGIVSRSGTLTYEAVHQLTKAGFGQSTCVGIGGDPVNGTSFIDVLEAFEKDPETEAIVMIGEIGGSAEEEAADF--- 219 (286)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCchHHHHHHH---
Confidence 68899999999999999999999997666777777775422 38899999999999999998765432211222222
Q ss_pred HHHHcCCCCcEEEEeCCCCH-------------------HH-HHHHHHHCCCCcccCCCHHHHHHHHHH
Q psy12143 374 AAQELSLKIPIICRLQGTNV-------------------DD-AKVLIASAAMKILPCDNLDEAARLAVK 422 (443)
Q Consensus 374 ~~~~~~~~kpiv~~~~g~~~-------------------~~-~~~~L~~~GiP~~~f~s~e~Av~al~~ 422 (443)
++. ..+|||+++-.|... .+ ....|++.|+.. .+++++-...+.+
T Consensus 220 -~~~-~~~KPVV~lk~Grs~~~g~~~sHTGala~~~~g~~~~~~aa~rqaGvi~--v~~~~el~d~l~~ 284 (286)
T TIGR01019 220 -IKQ-NMSKPVVGFIAGATAPPGKRMGHAGAIISGGKGTAESKIEALEAAGVTV--VKSPSDIGELLAE 284 (286)
T ss_pred -HHh-cCCCCEEEEEecCCCCccccccchhhhhcCCCCCHHHHHHHHHHCCCeE--eCCHHHHHHHHHH
Confidence 221 147999976433321 12 245889999987 7898887766543
No 96
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=97.76 E-value=1.5e-05 Score=72.28 Aligned_cols=82 Identities=29% Similarity=0.425 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHHH
Q psy12143 37 HEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKM 116 (443)
Q Consensus 37 ~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~l 116 (443)
+++..+++|++.|||+|........+ ...+ |+|+||..-.||. |+.+..+.+++.....
T Consensus 3 dK~~~~~~L~~~gi~~P~~~~~~~~~-------~~~~-~~viKp~~G~Gg~-----------~i~~~~~~~~~~~~~~-- 61 (161)
T PF02655_consen 3 DKLKTYKFLKELGIPVPTTLRDSEPE-------PIDG-PWVIKPRDGAGGE-----------GIRIVDSEDELEEFLN-- 61 (161)
T ss_dssp SHHHHHHHHTTT-S--------EESS---------SS-SEEEEESS------------------B--SS--TTE------
T ss_pred CHHHHHHHHHccCCCCCCcccccccc-------ccCC-cEEEEeCCCCCCC-----------CeEEECCchhhccccc--
Confidence 57789999999999999322221111 1255 9999996322221 5666677765543322
Q ss_pred hhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 117 IGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 117 ~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
...++|+|++ |.++++.+..+..
T Consensus 62 -----------------~~~i~Qe~i~-G~~~Sv~~l~~~~ 84 (161)
T PF02655_consen 62 -----------------KLRIVQEFIE-GEPYSVSFLASGG 84 (161)
T ss_dssp --------------------EEEE----SEEEEEEEEE-SS
T ss_pred -----------------cceEEeeeeC-CEEeEEEEEEeCC
Confidence 1228999999 8999999999874
No 97
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=97.70 E-value=0.00069 Score=67.61 Aligned_cols=124 Identities=14% Similarity=0.184 Sum_probs=89.3
Q ss_pred CCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCC--CCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHH
Q psy12143 295 DGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGG--ATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGII 372 (443)
Q Consensus 295 ~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~--~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~ 372 (443)
.|+|+++|-||+++....|.+...|.-..-.+-++.+ ++. .+.+.++.+.+||++++|++++-++.... .-...++
T Consensus 150 ~G~ValiSQSG~l~~~l~~~~~~~giG~S~~VS~Gn~~~adv-~~~d~L~yl~~Dp~T~~I~ly~E~~G~~~-~d~~~f~ 227 (300)
T PLN00125 150 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGT-NFVDCLEKFVKDPQTEGIILIGEIGGTAE-EDAAAFI 227 (300)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHcCCCeEEEEEeCCCCCCCC-CHHHHHHHHhhCCCCcEEEEEeccCCchH-HHHHHHH
Confidence 6889999999999999999999999666666666666 443 38899999999999999998776532211 1223444
Q ss_pred HHHHHcCCCCcEEEEeCCCCH--------------------HHHHHHHHHCCCCcccCCCHHHHHHHHHHHHH
Q psy12143 373 AAAQELSLKIPIICRLQGTNV--------------------DDAKVLIASAAMKILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 373 ~~~~~~~~~kpiv~~~~g~~~--------------------~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~ 425 (443)
++++ .+||||++..|... ......+++.|+.. .+++++-...+....+
T Consensus 228 ~aa~---~~KPVV~lk~Grs~~~g~~~sHTGala~~~~G~~~~~~a~~rq~Gvi~--v~~~~el~~~~~~~~~ 295 (300)
T PLN00125 228 KESG---TEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKALREAGVTV--VESPAKIGVAMLEVFK 295 (300)
T ss_pred HHhc---CCCCEEEEEecCCCCCCCCccchhhhhcCCCCCHHHHHHHHHHCCCeE--eCCHHHHHHHHHHHHH
Confidence 4443 37999976443321 11245899999988 8999988887766543
No 98
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=97.69 E-value=0.00053 Score=66.85 Aligned_cols=124 Identities=19% Similarity=0.304 Sum_probs=88.8
Q ss_pred cCCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHH
Q psy12143 294 LDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAA-QVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGII 372 (443)
Q Consensus 294 ~~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~~-~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~ 372 (443)
..|+|+|++-||.+.--++..+...|.=..--+=++|+.-.- .+.++|+.+.+||++++|++.---+ .+.++.|...+
T Consensus 144 ~~G~IGiVSrSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGEiG-G~aEe~AA~~i 222 (293)
T COG0074 144 KPGNIGIVSRSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGEIG-GPAEEEAAEYI 222 (293)
T ss_pred cCCceEEEecCcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEecCC-CcHHHHHHHHH
Confidence 479999999999999999999999995555667788886654 4899999999999999988632111 22344444333
Q ss_pred HHHHHcCCCCcEEEEeCCCCH--------------------HHHHHHHHHCCCCcccCCCHHHHHHHHHHH
Q psy12143 373 AAAQELSLKIPIICRLQGTNV--------------------DDAKVLIASAAMKILPCDNLDEAARLAVKL 423 (443)
Q Consensus 373 ~~~~~~~~~kpiv~~~~g~~~--------------------~~~~~~L~~~GiP~~~f~s~e~Av~al~~l 423 (443)
+. .. .+||||++..|... .+-.+.|++.|+++ -++|.+-.+.+..+
T Consensus 223 ~~-~~--~~KPVVa~iaG~tap~gkrmGhaGaiv~~~~gta~~Ki~al~~aGv~v--~etp~~l~~~l~~v 288 (293)
T COG0074 223 KA-NA--TRKPVVAYIAGRTAPEGKRMGHAGAIVSGGKGTAESKIAALEAAGVKV--AETPAELGELLLEV 288 (293)
T ss_pred HH-hc--cCCCEEEEEeccCCCccchhhhhhhhhcCCCccHHHHHHHHHHcCCee--cCCHHHHHHHHHHH
Confidence 32 22 35999987655321 22346899999999 88988776666544
No 99
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=97.62 E-value=0.00079 Score=71.06 Aligned_cols=122 Identities=24% Similarity=0.336 Sum_probs=87.0
Q ss_pred CCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHH
Q psy12143 295 DGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAA 374 (443)
Q Consensus 295 ~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~ 374 (443)
.|+|+++|-||+++....|.+...|.-..-.+-++.+++. .+.+.++.+.+||++++|++++-+ +.+...+ .++
T Consensus 150 ~G~valvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~d~-~~~d~l~~l~~D~~t~~I~ly~E~-~~~~~~f----~~a 223 (447)
T TIGR02717 150 KGGIAFISQSGALLTALLDWAEKNGVGFSYFVSLGNKADI-DESDLLEYLADDPDTKVILLYLEG-IKDGRKF----LKT 223 (447)
T ss_pred CCCEEEEechHHHHHHHHHHHHhcCCCcceEEECCchhhC-CHHHHHHHHhhCCCCCEEEEEecC-CCCHHHH----HHH
Confidence 6789999999999999999999998655555555555442 378899999999999999987653 3333333 333
Q ss_pred HHHcCCCCcEEEEeCCCCHH----------------H-HHHHHHHCCCCcccCCCHHHHHHHHHHHH
Q psy12143 375 AQELSLKIPIICRLQGTNVD----------------D-AKVLIASAAMKILPCDNLDEAARLAVKLS 424 (443)
Q Consensus 375 ~~~~~~~kpiv~~~~g~~~~----------------~-~~~~L~~~GiP~~~f~s~e~Av~al~~l~ 424 (443)
+++...+||||++-.|.... . ....|++.|+.. .+++++-......|.
T Consensus 224 a~~a~~~KPVv~~k~Grs~~g~~aa~sHtgalag~~~~~~a~~~~~Gv~~--~~~~~el~~~~~~l~ 288 (447)
T TIGR02717 224 AREISKKKPIVVLKSGTSEAGAKAASSHTGALAGSDEAYDAAFKQAGVIR--ADSIEELFDLARLLS 288 (447)
T ss_pred HHHHcCCCCEEEEecCCChhhhhhhhhccccccChHHHHHHHHHHCCeEE--eCCHHHHHHHHHHHh
Confidence 33322379999876554211 1 125889999988 789988777765554
No 100
>PRK06091 membrane protein FdrA; Validated
Probab=97.62 E-value=0.00057 Score=72.84 Aligned_cols=121 Identities=23% Similarity=0.284 Sum_probs=89.9
Q ss_pred CCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCC-----CCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHH
Q psy12143 295 DGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGG-----ATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAE 369 (443)
Q Consensus 295 ~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~-----~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~ 369 (443)
.|+|++||-||+.+...++.+...|.-....+-+++. +..-.+.++++.+.+||+++.|++++-.+ .+.+.+
T Consensus 193 ~G~IgiVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~kpp---aE~v~~ 269 (555)
T PRK06091 193 EGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVSKPP---AEAVRL 269 (555)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEEecC---chHHHH
Confidence 7889999999999999999999999655555655555 21223889999999999999999865111 134445
Q ss_pred HHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHHHH
Q psy12143 370 GIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSSI 426 (443)
Q Consensus 370 ~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~~ 426 (443)
.+.+++++ ..||||+...|... .+. ++.|+-. .++.++++.....|+..
T Consensus 270 ~fl~aar~--~~KPVVvlk~Grs~-~g~---~q~GVi~--a~tleEl~~~A~~la~~ 318 (555)
T PRK06091 270 KIINAMKA--TGKPVVALFLGYTP-AVA---RDENVWF--ASTLDEAARLACLLSRV 318 (555)
T ss_pred HHHHHHhh--CCCCEEEEEecCCc-hhh---hcCCeEE--eCCHHHHHHHHHHHhcc
Confidence 77777766 47999998777633 222 7788866 79999999887776644
No 101
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=97.58 E-value=0.00046 Score=70.14 Aligned_cols=100 Identities=14% Similarity=0.173 Sum_probs=68.7
Q ss_pred HHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHHHhhc
Q psy12143 40 VSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGD 119 (443)
Q Consensus 40 ~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~l~~~ 119 (443)
...++|+++|||+|+... ++ +++.+ ||+||+....|.-++ |+.++.|++|+.+.+.++...
T Consensus 129 ~~yk~L~~aGI~~Pk~~~--~p-------~eId~-PVIVKp~~asG~~sr---------G~f~a~s~eEl~~~a~~l~~~ 189 (366)
T PRK13277 129 NYYWLLEKAGIPYPKLFK--DP-------EEIDR-PVIVKLPEAKRRLER---------GFFTASSYEDFYEKSEELIKA 189 (366)
T ss_pred HHHHHHHHcCCCCceeec--Cc-------cccCc-cEEEEECCCCCcccc---------CeEeeCCHHHHHHHHHhhhhc
Confidence 344699999999998554 33 36687 999999643330022 788999999998887776432
Q ss_pred hhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeec
Q psy12143 120 YLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIAS 166 (443)
Q Consensus 120 ~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g 166 (443)
.. ......+..+||||+. |.|+++-+..||.. |-+-++|
T Consensus 190 g~------I~~~~~~~~iIQEyI~-G~ey~~d~F~s~l~-g~ve~l~ 228 (366)
T PRK13277 190 GV------IDREDLKNARIEEYVI-GAHFNFNYFYSPIR-DRLELLG 228 (366)
T ss_pred Cc------ccccccccceeEeccC-CCEEEEEEEEeccC-CcEEEEE
Confidence 10 0011236778999998 89999999999753 5444433
No 102
>KOG0368|consensus
Probab=97.36 E-value=0.0016 Score=74.69 Aligned_cols=84 Identities=18% Similarity=0.404 Sum_probs=67.2
Q ss_pred cCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHHHhhchhhhhhcCCCCcccCeEE
Q psy12143 58 AKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVM 137 (443)
Q Consensus 58 v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vl 137 (443)
++|.+|..++++.+|| |+.+|+. .||.|| |++-+.+.++....+++..... +| ..+.
T Consensus 225 v~~~eegLeaae~IGf-PvMIKAS--EGGGGK---------GIRkv~n~ddF~~lf~qv~~Ev--------PG---SPIF 281 (2196)
T KOG0368|consen 225 VRNVEEGLEAAEKIGF-PVMIKAS--EGGGGK---------GIRKVENEDDFKALFKQVQNEV--------PG---SPIF 281 (2196)
T ss_pred cCCHHHHHHHHHhcCC-ceEEEec--cCCCCc---------ceeeccchHHHHHHHHHHHhhC--------CC---Ccee
Confidence 5689999999999999 9999995 566666 7888999999999888875432 23 4578
Q ss_pred EEeeeCCCeeeEEEEEEeccCCCcEE-eec
Q psy12143 138 VTERKYPRKEYYFAFMMERSFAGPVL-IAS 166 (443)
Q Consensus 138 VE~~v~~g~El~vgv~~D~~~~gpvv-~~g 166 (443)
+-+-+...+.+.+.+..|.. |-++ +||
T Consensus 282 lMK~a~~ARHlEVQlLaDqY--Gn~IsLfg 309 (2196)
T KOG0368|consen 282 LMKLADQARHLEVQLLADQY--GNVISLFG 309 (2196)
T ss_pred eeecccCcceeeeehhhhhc--CCEeEeec
Confidence 88888889999999999984 6654 455
No 103
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=97.25 E-value=0.0018 Score=65.40 Aligned_cols=92 Identities=12% Similarity=0.082 Sum_probs=66.6
Q ss_pred CCHHHHHHHHHHCC-------CCCCCeeecCCHHHHH---HHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCC
Q psy12143 36 VHEHVSYTLLKEGG-------IPVPPFGVAKTKKEAG---EIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDT 105 (443)
Q Consensus 36 L~e~~ak~lL~~~G-------Ipv~~~~~v~s~~ea~---~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s 105 (443)
.+......+|.+.| ||+|++.++.+.+.+. ...+++|| |+|+||...+ |...+ -++.++.+
T Consensus 106 ~dR~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~~~~~~l~~-P~V~KPl~g~-Gss~g-------h~m~lv~~ 176 (328)
T PLN02941 106 HNRQSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDAVALAGLKF-PLVAKPLVAD-GSAKS-------HKMSLAYD 176 (328)
T ss_pred HHHHHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHHHHHhcCCC-CEEEeecccC-CCccc-------cceEEecC
Confidence 55666778899999 9999999998877644 34568999 9999997543 33333 27888888
Q ss_pred HHHHHHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCC-CeeeEEEEEEec
Q psy12143 106 PEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYP-RKEYYFAFMMER 156 (443)
Q Consensus 106 ~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~-g~El~vgv~~D~ 156 (443)
++++.. + + ..+++|+|+.+ ++-+.+-|..|.
T Consensus 177 ~~~L~~----l-~---------------~p~~lQEfVnh~g~d~RVfVvGd~ 208 (328)
T PLN02941 177 QEGLSK----L-E---------------PPLVLQEFVNHGGVLFKVYVVGDY 208 (328)
T ss_pred HHHHHh----c-C---------------CcEEEEEecCCCCEEEEEEEECCE
Confidence 876653 1 1 13999999964 666667766665
No 104
>KOG0370|consensus
Probab=96.79 E-value=0.0028 Score=70.14 Aligned_cols=124 Identities=15% Similarity=0.201 Sum_probs=84.8
Q ss_pred HHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHHHhhchh
Q psy12143 42 YTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDYL 121 (443)
Q Consensus 42 k~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~l~~~~~ 121 (443)
-++|...||..|+|+-.+|.+||..++++.|| ||.+.|...-.| - ..-++.+.++++...++...-.
T Consensus 1038 S~~Ld~i~v~Qp~Wkelt~~~eA~~F~~~VgY-P~lvRPSYVLSG--a---------AMnv~~~~~dl~~~L~~A~~vs- 1104 (1435)
T KOG0370|consen 1038 SRMLDSIGVDQPAWKELTSLEEAKKFAEKVGY-PVLVRPSYVLSG--A---------AMNVVYSESDLKSYLEQASAVS- 1104 (1435)
T ss_pred HHHHHHcCCCchhhhhhccHHHHHHHHHhcCC-ceEecccceecc--h---------hhhhhhcHHHHHHHHHHHhhcC-
Confidence 37899999999999999999999999999999 999999753211 1 2334578888887777653311
Q ss_pred hhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEE--eecCCCCcchhcccccCCCeEEEEecCCCCCCCHH
Q psy12143 122 ITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVL--IASSQGGVNIEEVAAENPSAILYEPVDITVGITKE 198 (443)
Q Consensus 122 ~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv--~~g~~GGv~vE~l~~~~~d~v~~~~l~p~~~l~~~ 198 (443)
+ -..|.+.+|+++.+|+-+-..... |-++ .++ + .||.-.-++.|.- +.++| +.++..
T Consensus 1105 -------~---dhPVVisKfie~AkEidvDAVa~~---G~~~~haiS-E---HvEnAGVHSGDAt--lv~Pp-q~l~~~ 1163 (1435)
T KOG0370|consen 1105 -------P---DHPVVISKFIEGAKEIDVDAVASD---GKVLVHAIS-E---HVENAGVHSGDAT--LVLPP-QDLSAD 1163 (1435)
T ss_pred -------C---CCCEEhHHhhcccceechhhhccC---CeEEEEehh-h---hhhcccccCCcee--EeCCc-hhcCHH
Confidence 1 246999999999999877544321 3332 233 2 5777665555643 33344 445554
No 105
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=96.52 E-value=0.017 Score=58.12 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHc--CCCeEEEEEeecCCCC
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKL--NIKDIVLKAQVLAGGR 87 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~l--g~~PvVlK~~~~~~gk 87 (443)
.=++..+..+|+++|||+|++..+.+.+...+...++ +++|||+||..-.+|+
T Consensus 35 ~~DK~~t~~lL~~aglpvP~T~~~~s~~~~~~~l~~~~~~~~~VVVKPl~Gs~Gr 89 (317)
T TIGR02291 35 VDDKLKTKIIAQAAGITVPELYGVIHNQAEVKTIHNIVKDHPDFVIKPAQGSGGK 89 (317)
T ss_pred cccHHHHHHHHHHcCCCCCCEEEecCchhhHHHHHHHHccCCCEEEEECCCCCcc
Confidence 3467788999999999999988777665443333333 4447999997433333
No 106
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=96.50 E-value=0.026 Score=56.79 Aligned_cols=84 Identities=20% Similarity=0.216 Sum_probs=53.4
Q ss_pred HCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeC-CHHHHHHHHHHHhhchhhhhh
Q psy12143 47 EGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVD-TPEEAEEVAGKMIGDYLITKQ 125 (443)
Q Consensus 47 ~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~-s~ee~~~a~~~l~~~~~~~~~ 125 (443)
.+..++|++.+..+.+++.++.++.| |+|+||....+ |+ ||.... +..++.... +.+...
T Consensus 129 ~~~~~vP~T~v~~~~~~~~~~~~~~g--~vVvKPl~G~~--G~---------gv~~v~~~~~~~~~~~-~~~~~~----- 189 (312)
T TIGR01380 129 QFPKVIPPTLVTRDKAEIRAFLAEHG--DIVLKPLDGMG--GE---------GIFRLDPGDPNFNSIL-ETMTQR----- 189 (312)
T ss_pred hCcCCCCCEEEeCCHHHHHHHHHHcC--CEEEEECCCCC--Cc---------eEEEEcCCCccHHHHH-HHHHhc-----
Confidence 44458999998889999999999887 79999964333 32 566543 232232222 222110
Q ss_pred cCCCCcccCeEEEEeeeCC--CeeeEEEEEEe
Q psy12143 126 TGEKGRICNAVMVTERKYP--RKEYYFAFMME 155 (443)
Q Consensus 126 ~~~~g~~~~~vlVE~~v~~--g~El~vgv~~D 155 (443)
+ ...+++|+|++. +.++.+-+..+
T Consensus 190 ----~--~~~~~vQ~yI~~~~~~D~Rv~vv~g 215 (312)
T TIGR01380 190 ----G--REPVMAQRYLPEIKEGDKRILLIDG 215 (312)
T ss_pred ----c--CCcEEEEeccccccCCCEEEEEECC
Confidence 1 146999999973 46888876543
No 107
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=96.49 E-value=0.009 Score=58.70 Aligned_cols=103 Identities=18% Similarity=0.248 Sum_probs=65.6
Q ss_pred HHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHHHhhch
Q psy12143 41 SYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDY 120 (443)
Q Consensus 41 ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~l~~~~ 120 (443)
-.+...++|+|.|....++|..+. .+.++-| ||++||.. .++.+. ... .=+....|.+|++.++.+..+.-
T Consensus 118 lY~ra~elgl~~P~Ty~v~S~~d~--~~~el~F-PvILKP~m-gg~~~~----~ar-aKa~~a~d~ee~k~a~~~a~eei 188 (415)
T COG3919 118 LYNRAEELGLPYPKTYLVNSEIDT--LVDELTF-PVILKPGM-GGSVHF----EAR-AKAFTAADNEEMKLALHRAYEEI 188 (415)
T ss_pred HHHHHHHhCCCCcceEEecchhhh--hhhheee-eEEecCCC-CCccee----ehh-hheeeccCHHHHHHHHHHHHHhc
Confidence 345567899999999999976654 5568888 99999951 111111 100 12344678888888877764421
Q ss_pred hhhhhcCCCCcccCeEEEEeeeCCCee--eEEEEEEeccCCCcEEee
Q psy12143 121 LITKQTGEKGRICNAVMVTERKYPRKE--YYFAFMMERSFAGPVLIA 165 (443)
Q Consensus 121 ~~~~~~~~~g~~~~~vlVE~~v~~g~E--l~vgv~~D~~~~gpvv~~ 165 (443)
+ .+.++||+|+++|-| +......|.. -|+.+|
T Consensus 189 ------g-----pDnvvvQe~IPGGgE~qfsyaAlw~~g--~pvaef 222 (415)
T COG3919 189 ------G-----PDNVVVQEFIPGGGENQFSYAALWDKG--HPVAEF 222 (415)
T ss_pred ------C-----CCceEEEEecCCCCcccchHHHHHhCC--Cchhhh
Confidence 1 378999999998776 3333344442 355444
No 108
>PRK12458 glutathione synthetase; Provisional
Probab=96.24 E-value=0.024 Score=57.68 Aligned_cols=90 Identities=13% Similarity=0.153 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHH--HHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPE--EAEEVA 113 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~e--e~~~a~ 113 (443)
-++.....+++ +++|++.+..+.+++.++.++.|++|+|+||....+|+ ||.+..+.+ .+....
T Consensus 128 ~dK~~~~~l~~---~~vP~T~v~~~~~~~~~~~~~~~~~pvVvKPl~G~gG~-----------gV~~v~~~~~~~~~~il 193 (338)
T PRK12458 128 NNKLYFQSFPE---EVRPTTHISRNKEYIREFLEESPGDKMILKPLQGSGGQ-----------GVFLIEKSAQSNLNQIL 193 (338)
T ss_pred cCHHHHHhhcc---CCCCCEEEeCCHHHHHHHHHHcCCCeEEEEECCCCCcc-----------CeEEEecCChhhHHHHH
Confidence 33444444443 68899999999999999999997635999996443333 676664333 233333
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCC--CeeeEEEEE
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYP--RKEYYFAFM 153 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~--g~El~vgv~ 153 (443)
+.+.. ...+++|+|++. +.++.+-+.
T Consensus 194 e~~~~--------------~~~~ivQeyI~~~~~gDiRv~vv 221 (338)
T PRK12458 194 EFYSG--------------DGYVIAQEYLPGAEEGDVRILLL 221 (338)
T ss_pred HHHhh--------------CCCEEEEEcccCCCCCCEEEEEE
Confidence 32211 135999999973 456666654
No 109
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=95.68 E-value=0.075 Score=52.90 Aligned_cols=89 Identities=24% Similarity=0.409 Sum_probs=66.9
Q ss_pred HHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHHHhhch
Q psy12143 41 SYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDY 120 (443)
Q Consensus 41 ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~l~~~~ 120 (443)
-+.+|.++||+.|. ..+|++|. .. ||+||.....+|| |-.++.|++|..+-+++++.+-
T Consensus 128 ~~~lLekAgi~~P~--~~~~PeeI-------dr-~VIVK~pgAkggR-----------GyFiA~s~eef~ek~e~l~~~g 186 (361)
T COG1759 128 EYKLLEKAGLRIPK--KYKSPEEI-------DR-PVIVKLPGAKGGR-----------GYFIASSPEEFYEKAERLLKRG 186 (361)
T ss_pred HHHHHHHcCCCCCc--ccCChHHc-------CC-ceEEecCCccCCc-----------eEEEEcCHHHHHHHHHHHHHcC
Confidence 36899999999997 77888765 44 9999997554443 6788999999999999998753
Q ss_pred hhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 121 LITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 121 ~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
.. ..+..+...||+|+- |.-+++-....|.
T Consensus 187 vi------~~edlkna~IeEYv~-G~~f~~~yFyS~i 216 (361)
T COG1759 187 VI------TEEDLKNARIEEYVV-GAPFYFHYFYSPI 216 (361)
T ss_pred Cc------chhhhhhceeeEEee-ccceeeeeeeccc
Confidence 11 123356889999987 6677777666665
No 110
>PRK05246 glutathione synthetase; Provisional
Probab=95.20 E-value=0.16 Score=51.14 Aligned_cols=79 Identities=20% Similarity=0.234 Sum_probs=52.2
Q ss_pred CCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEe-CCHHHHHHHHHHHhhchhhhhhcCCC
Q psy12143 51 PVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMV-DTPEEAEEVAGKMIGDYLITKQTGEK 129 (443)
Q Consensus 51 pv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~-~s~ee~~~a~~~l~~~~~~~~~~~~~ 129 (443)
++|++.+.++.+++.++.++.| |+|+||....+|+ ||... .+..++....+. +...
T Consensus 134 ~vP~T~~~~~~~~~~~~~~~~~--~vVlKP~~G~~G~-----------gV~~i~~~~~~~~~~~~~-l~~~--------- 190 (316)
T PRK05246 134 LMPPTLVTRDKAEIRAFRAEHG--DIILKPLDGMGGA-----------GIFRVKADDPNLGSILET-LTEH--------- 190 (316)
T ss_pred cCCCEEEeCCHHHHHHHHHHCC--CEEEEECCCCCcc-----------ceEEEeCCCccHHHHHHH-HHHc---------
Confidence 7899999999999999999886 8999997433333 56665 433333322222 2110
Q ss_pred CcccCeEEEEeeeCC--CeeeEEEEEE
Q psy12143 130 GRICNAVMVTERKYP--RKEYYFAFMM 154 (443)
Q Consensus 130 g~~~~~vlVE~~v~~--g~El~vgv~~ 154 (443)
+ ...+++|+|++. +.++.+-+..
T Consensus 191 ~--~~~~lvQ~~I~~~~~~D~Rv~vv~ 215 (316)
T PRK05246 191 G--REPVMAQRYLPEIKEGDKRILLVD 215 (316)
T ss_pred c--CCeEEEEeccccCCCCCEEEEEEC
Confidence 1 146999999964 4677777663
No 111
>KOG1255|consensus
Probab=95.18 E-value=0.21 Score=47.93 Aligned_cols=123 Identities=15% Similarity=0.234 Sum_probs=73.7
Q ss_pred cCCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHHcCCCccEEEEEc-cCCCCChHHHHHHH
Q psy12143 294 LDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAA-QVKEAFKIITADPKVCAIMVNI-FGGIMRCDVIAEGI 371 (443)
Q Consensus 294 ~~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~~-~~~~al~~ll~dp~vd~vlv~i-~~~~~~~~~~a~~i 371 (443)
..|.|+|++-||-+..-+...-..-|.--.-=+-++|++-+- .|-+||+..++||++.+|++.- .++.. .++.|+-+
T Consensus 175 k~G~IGIVSRSGTLTYEaVhQTT~vglGQslcvGiGGDpFnGT~FID~L~vFl~D~~t~GIiliGEIGG~A-Ee~AA~fl 253 (329)
T KOG1255|consen 175 KRGKIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTNFIDCLEVFLEDPETEGIILIGEIGGSA-EEEAAEFL 253 (329)
T ss_pred cCCeeEEEecCCceeehhhhhhccccccceeEEeecCCCCCCccHHHHHHHHhcCcccceEEEEeccCChh-hHHHHHHH
Confidence 368899999999765544443333332123345677777654 4999999999999999988631 12211 22333332
Q ss_pred HHHHHHcCCCCcEEEEeCCC--------------------CHHHHHHHHHHCCCCcccCCCHHHHHHHH
Q psy12143 372 IAAAQELSLKIPIICRLQGT--------------------NVDDAKVLIASAAMKILPCDNLDEAARLA 420 (443)
Q Consensus 372 ~~~~~~~~~~kpiv~~~~g~--------------------~~~~~~~~L~~~GiP~~~f~s~e~Av~al 420 (443)
-+.... ...||||.+..|. ...+-...|+++|+-+ -+||..-=.++
T Consensus 254 k~~nSg-~~~kPVvsFIAG~tAppGrRMGHaGAIisGgkg~A~dKi~aL~~agV~v--t~sPa~lG~~~ 319 (329)
T KOG1255|consen 254 KEYNSG-STAKPVVSFIAGVTAPPGRRMGHAGAIISGGKGTAKDKIAALRDAGVVV--TESPAKLGSAM 319 (329)
T ss_pred HHhccC-CCCCceeEEeecccCCCcccccccceeeeCCCccHHHHHHHHHhcCeEE--EcCHHHHHHHH
Confidence 222111 1369998654332 1233456899999877 78886544443
No 112
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=92.56 E-value=0.49 Score=47.02 Aligned_cols=53 Identities=25% Similarity=0.310 Sum_probs=37.5
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeee-----------cCCHHHHHHHHHHc-CCCeEEEEEeecCCCC
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGV-----------AKTKKEAGEIAKKL-NIKDIVLKAQVLAGGR 87 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~-----------v~s~~ea~~~a~~l-g~~PvVlK~~~~~~gk 87 (443)
..-++...++++.++|||+|+... ..+.++..++.... .. ++|+||..-.+|+
T Consensus 23 l~~DK~~~~~l~~~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~viKP~~G~~G~ 87 (285)
T PF14397_consen 23 LLDDKLLFKQLFRDYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPD-RFVIKPANGSGGK 87 (285)
T ss_pred ccCCHHHHHHHHHHhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCC-cEEEEeCCCCCcc
Confidence 345678889999999999999321 23567777777765 33 8999997433333
No 113
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=92.13 E-value=0.57 Score=47.03 Aligned_cols=91 Identities=16% Similarity=0.145 Sum_probs=49.9
Q ss_pred CeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCC--CCcchhcccccCCCeEEEEecCCCCC-CC---HHHHHHHHHHc
Q psy12143 134 NAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQ--GGVNIEEVAAENPSAILYEPVDITVG-IT---KEQALKVADAV 207 (443)
Q Consensus 134 ~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~--GGv~vE~l~~~~~d~v~~~~l~p~~~-l~---~~~a~~~l~~l 207 (443)
.+|+.|+|++ |+-+++.+..+.+. --.+.+..+ ||..-+.. ..+..--+.|..- .. +..|.+++.+|
T Consensus 176 ~~~i~Qefi~-G~p~Svs~is~g~~-a~~la~N~QiI~~~~~~~~-----~f~Y~GNlTP~~~~~~ee~e~la~elV~~l 248 (389)
T COG2232 176 PGFIFQEFIE-GRPVSVSFISNGSD-ALTLAVNDQIIDGLRGEYS-----QFVYKGNLTPFPYEEVEEAERLAEELVEEL 248 (389)
T ss_pred cceehhhhcC-CceeEEEEEecCcc-eEEEEEeeeeecccccccc-----cceeccCcCCCcchhhHHHHHHHHHHHHHh
Confidence 6899999999 89999999988663 333333311 11111111 0111111233111 11 23355666677
Q ss_pred CC-c---hhHHHHHHHHHHHHHhhhhCCCeEEeeeceeEc
Q psy12143 208 GL-K---AKRDITAEMLIKMYALFISKDASLIEINPYAED 243 (443)
Q Consensus 208 g~-g---~d~~~l~~~l~~l~~l~~~~~~~~lEINPl~v~ 243 (443)
|+ | .|. ++.+.+...+||||.+..
T Consensus 249 gL~GsnGVDf------------vl~d~gpyViEVNPR~qG 276 (389)
T COG2232 249 GLVGSNGVDF------------VLNDKGPYVIEVNPRIQG 276 (389)
T ss_pred ccccccccce------------EeecCCcEEEEecCcccc
Confidence 76 4 333 345677889999998753
No 114
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=91.28 E-value=0.68 Score=42.65 Aligned_cols=67 Identities=27% Similarity=0.319 Sum_probs=39.1
Q ss_pred CCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEe-CCHHHHHHHHHHHhhchhhhhhcCCCC
Q psy12143 52 VPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMV-DTPEEAEEVAGKMIGDYLITKQTGEKG 130 (443)
Q Consensus 52 v~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~-~s~ee~~~a~~~l~~~~~~~~~~~~~g 130 (443)
+|++.+.++.+++.++.++.|. +|+||....||+ ||... .+...+....+.+... +
T Consensus 12 ~P~T~vs~~~~~i~~f~~~~~~--~VlKPl~g~gG~-----------gV~~i~~~~~n~~~i~e~~~~~----------~ 68 (173)
T PF02955_consen 12 IPPTLVSRDKEEIRAFIEEHGD--IVLKPLDGMGGR-----------GVFRISRDDPNLNSILETLTKN----------G 68 (173)
T ss_dssp S--EEEES-HHHHHHHHHHHSS--EEEEESS--TTT-----------T-EEE-TT-TTHHHHHHHHTTT----------T
T ss_pred CcCEEEECCHHHHHHHHHHCCC--EEEEECCCCCCc-----------CEEEEcCCCCCHHHHHHHHHhc----------C
Confidence 5888888999999999999985 999997555544 45554 4444444444443221 1
Q ss_pred cccCeEEEEeeeC
Q psy12143 131 RICNAVMVTERKY 143 (443)
Q Consensus 131 ~~~~~vlVE~~v~ 143 (443)
-..+++|+|++
T Consensus 69 --~~~~mvQ~flp 79 (173)
T PF02955_consen 69 --ERPVMVQPFLP 79 (173)
T ss_dssp --TS-EEEEE--G
T ss_pred --CccEEEEeccc
Confidence 25799999997
No 115
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=90.54 E-value=4.3 Score=40.73 Aligned_cols=116 Identities=20% Similarity=0.171 Sum_probs=69.6
Q ss_pred CCcEEEEEcchhHHHHHHHHHHHcCCCCCCe---eeec-----CCCCHHHHHHHHHHHHcCC---CccEEEEEccCC-CC
Q psy12143 295 DGSIGCLVNGAGLAMATMDIIKLHGGEPANF---LDVG-----GGATAAQVKEAFKIITADP---KVCAIMVNIFGG-IM 362 (443)
Q Consensus 295 ~g~iaiitngGG~g~la~D~~~~~G~~~~NP---vDl~-----g~~~~~~~~~al~~ll~dp---~vd~vlv~i~~~-~~ 362 (443)
-.+|||||+..|+|+ -|.+....- .+| +.+- |.-.+....++++.+-+.+ .+|.|++.=.|| ..
T Consensus 14 p~~I~vITs~~gAa~--~D~~~~~~~--r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~e 89 (319)
T PF02601_consen 14 PKRIAVITSPTGAAI--QDFLRTLKR--RNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIE 89 (319)
T ss_pred CCEEEEEeCCchHHH--HHHHHHHHH--hCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChH
Confidence 467999999998887 677765442 333 3332 3334556899999998776 799988754444 21
Q ss_pred ChH-HHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcccCCCHHHHHHHHH
Q psy12143 363 RCD-VIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAV 421 (443)
Q Consensus 363 ~~~-~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~ 421 (443)
+.. ---+.++++..+ .+.||+.-.|-....--.+...+.- ++||..|++.+.
T Consensus 90 DL~~FN~e~varai~~--~~~PvisaIGHe~D~ti~D~vAd~r-----a~TPtaaAe~~~ 142 (319)
T PF02601_consen 90 DLWAFNDEEVARAIAA--SPIPVISAIGHETDFTIADFVADLR-----APTPTAAAELIV 142 (319)
T ss_pred HhcccChHHHHHHHHh--CCCCEEEecCCCCCchHHHHHHHhh-----CCCHHHHHHHHh
Confidence 100 001445555554 5799987666442222233333322 678888887654
No 116
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=88.74 E-value=16 Score=32.86 Aligned_cols=107 Identities=23% Similarity=0.360 Sum_probs=65.1
Q ss_pred HHHHHHHcCCCCCCe--eeecCCCCHHHHHHHHHHHHcCCCccEEEEE--cc-CCCCCh----HHHHHHHHHHHHHcCCC
Q psy12143 311 TMDIIKLHGGEPANF--LDVGGGATAAQVKEAFKIITADPKVCAIMVN--IF-GGIMRC----DVIAEGIIAAAQELSLK 381 (443)
Q Consensus 311 a~D~~~~~G~~~~NP--vDl~g~~~~~~~~~al~~ll~dp~vd~vlv~--i~-~~~~~~----~~~a~~i~~~~~~~~~~ 381 (443)
+.|.+..+|+...|+ +++.|... -| -+.+.+++..++|+|+.. .. |+.... ...+++|.+..-+ ++
T Consensus 34 A~~~l~~~G~~~~~i~vv~VPGa~E-iP--l~a~~La~~~~yDAvv~lG~VIrG~T~Hfd~Va~~~~~gl~~vsl~--~~ 108 (152)
T COG0054 34 AVDALKRHGADVDNIDVVRVPGAFE-IP--LAAKKLARTGKYDAVVALGAVIRGETYHFDYVANEVARGLMDVSLE--TG 108 (152)
T ss_pred HHHHHHHcCCCcccceEEEeCCcch-hH--HHHHHHHhcCCcceEEEEeeEEeCCCccHHHHHHHHHHHHHHHHHh--hC
Confidence 678888888887755 33444433 33 567778888889999862 22 333333 4556777776655 68
Q ss_pred CcEEEEeCCC-CHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHHHHH
Q psy12143 382 IPIICRLQGT-NVDDAKVLIASAAMKILPCDNLDEAARLAVKLSSIV 427 (443)
Q Consensus 382 kpiv~~~~g~-~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~~~ 427 (443)
+||.....++ +.++ .++..|+.- =+-=.+|+.+...++++.
T Consensus 109 ~PV~~GVLt~~~~eq---A~~rag~~~--gnkG~~Aa~aAlem~~l~ 150 (152)
T COG0054 109 VPVTFGVLTTDNIEQ---AIERAGTKA--GNKGAEAAEAALEMANLL 150 (152)
T ss_pred CCeEeeecCCCcHHH---HHHHhCccc--cccHHHHHHHHHHHHHHh
Confidence 9998765554 4443 344456543 123356666666666653
No 117
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=87.33 E-value=22 Score=32.20 Aligned_cols=114 Identities=15% Similarity=0.189 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEE--EccCC-CCChHHHH----HHHHHHHHHcC
Q psy12143 307 LAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMV--NIFGG-IMRCDVIA----EGIIAAAQELS 379 (443)
Q Consensus 307 ~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv--~i~~~-~~~~~~~a----~~i~~~~~~~~ 379 (443)
+=--+.|.+..+|.+..|. |+.-=+-.-.+--+++.+++..++|++++ .+.-| ....+-++ ++|.+..-+
T Consensus 28 Ll~gA~~~l~~~G~~~~~i-~v~~VPGA~EiP~~a~~l~~~~~yDaiIaLG~VIrGeT~H~e~V~~~v~~gl~~vsl~-- 104 (158)
T PRK12419 28 ARKGFVAEIAARGGAASQV-DIFDVPGAFEIPLHAQTLAKTGRYAAIVAAALVVDGGIYRHEFVAQAVIDGLMRVQLD-- 104 (158)
T ss_pred HHHHHHHHHHHcCCCccce-EEEECCcHHHHHHHHHHHHhcCCCCEEEEEEEEEcCCCchhHHHHHHHHHHHHHHHhc--
Confidence 3334678888888765554 44311111124445566777788999997 33334 44444444 555554433
Q ss_pred CCCcEEEEeCCC-CHHHH--HHHHHHCCCCcccCCCHHHHHHHHHHHHHHH
Q psy12143 380 LKIPIICRLQGT-NVDDA--KVLIASAAMKILPCDNLDEAARLAVKLSSIV 427 (443)
Q Consensus 380 ~~kpiv~~~~g~-~~~~~--~~~L~~~GiP~~~f~s~e~Av~al~~l~~~~ 427 (443)
+++||.....++ +.+++ ++.+...|.- +-=.+|+++..++.++.
T Consensus 105 ~~~PV~fGVLT~~~~eqA~~rqa~~Ra~~~----nKG~eaA~aalem~~l~ 151 (158)
T PRK12419 105 TEVPVFSVVLTPHHFHESEEHHDFFRAHFV----VKGAEAAHACADTLLSR 151 (158)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHhhcCcc----ccHHHHHHHHHHHHHHH
Confidence 689999765443 44433 3345455532 23456677767777665
No 118
>PRK10949 protease 4; Provisional
Probab=85.39 E-value=1.9 Score=47.46 Aligned_cols=78 Identities=27% Similarity=0.449 Sum_probs=54.2
Q ss_pred CCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEE--EccCC-CCChHHHHHHH
Q psy12143 295 DGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMV--NIFGG-IMRCDVIAEGI 371 (443)
Q Consensus 295 ~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv--~i~~~-~~~~~~~a~~i 371 (443)
++.||||+..|-.. .|.+ -.|....+.+.+.++...+||+|++|++ +.+|+ ...++.+.+.|
T Consensus 325 ~~~Iavi~~~G~I~---------~g~~------~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i 389 (618)
T PRK10949 325 GGSIAVIFANGAIM---------DGEE------TPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAEL 389 (618)
T ss_pred CCeEEEEEEEEEEc---------CCCC------cCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHH
Confidence 45699998888531 1211 1245566789999999999999999998 56666 34456777777
Q ss_pred HHHHHHcCCCCcEEEEeCC
Q psy12143 372 IAAAQELSLKIPIICRLQG 390 (443)
Q Consensus 372 ~~~~~~~~~~kpiv~~~~g 390 (443)
.++ ++ .+|||++.+++
T Consensus 390 ~~~-r~--~gKPVvas~~~ 405 (618)
T PRK10949 390 AAA-RA--AGKPVVVSMGG 405 (618)
T ss_pred HHH-Hh--cCCcEEEEECC
Confidence 664 33 47999986643
No 119
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=84.26 E-value=17 Score=38.41 Aligned_cols=117 Identities=18% Similarity=0.244 Sum_probs=67.7
Q ss_pred CCcEEEEEcchhHHHHHHHHHHHcCCC-CCCeeee-----cCCCCHHHHHHHHHHHHcCCCccEEEEEccCC-CCCh-HH
Q psy12143 295 DGSIGCLVNGAGLAMATMDIIKLHGGE-PANFLDV-----GGGATAAQVKEAFKIITADPKVCAIMVNIFGG-IMRC-DV 366 (443)
Q Consensus 295 ~g~iaiitngGG~g~la~D~~~~~G~~-~~NPvDl-----~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~-~~~~-~~ 366 (443)
-.+|||||+..|+++ -|.+.-..-. |.-.+.+ =|.-.......+++.+...+++|.|+|.=.|| ..+. .-
T Consensus 129 p~~i~vits~~~aa~--~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~F 206 (432)
T TIGR00237 129 PKRVGVITSQTGAAL--ADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSF 206 (432)
T ss_pred CCEEEEEeCCccHHH--HHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhc
Confidence 467999999998876 5776654421 2212222 24444556888898888777899998754444 2111 00
Q ss_pred HHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcccCCCHHHHHHHH
Q psy12143 367 IAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLA 420 (443)
Q Consensus 367 ~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al 420 (443)
--+.++++... .+.|||...+-.....-.+.-.+.- ++||..|++.+
T Consensus 207 n~e~~~rai~~--~~~Pvis~iGHe~D~ti~D~vAd~r-----a~TPtaaae~~ 253 (432)
T TIGR00237 207 NDEKVARAIFL--SKIPIISAVGHETDFTISDFVADLR-----APTPSAAAEIV 253 (432)
T ss_pred CcHHHHHHHHc--CCCCEEEecCcCCCccHHHHhhhcc-----CCCcHHHHHHh
Confidence 01455555554 5899987666442222223333222 56777777654
No 120
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=82.46 E-value=4.6 Score=40.78 Aligned_cols=55 Identities=22% Similarity=0.379 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHcCCCccEEEE--EccCCC-CChHHHHHHHHHHHHHcCCCCcEEEEeC
Q psy12143 331 GATAAQVKEAFKIITADPKVCAIMV--NIFGGI-MRCDVIAEGIIAAAQELSLKIPIICRLQ 389 (443)
Q Consensus 331 ~~~~~~~~~al~~ll~dp~vd~vlv--~i~~~~-~~~~~~a~~i~~~~~~~~~~kpiv~~~~ 389 (443)
..+.+.+.+.++.+..||++++|++ |.|||. .-...+++.|.+..++ |||++...
T Consensus 79 ~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~----~PV~v~v~ 136 (317)
T COG0616 79 FIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAK----KPVVVSVG 136 (317)
T ss_pred cccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhc----CCEEEEEC
Confidence 5677889999999999999999887 778773 4346666776665443 48876543
No 121
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=81.69 E-value=6.4 Score=35.93 Aligned_cols=62 Identities=24% Similarity=0.314 Sum_probs=40.1
Q ss_pred eecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCC---hHHHHHHHHHHHHHcCCCCcEEEEeCCC
Q psy12143 327 DVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMR---CDVIAEGIIAAAQELSLKIPIICRLQGT 391 (443)
Q Consensus 327 Dl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~---~~~~a~~i~~~~~~~~~~kpiv~~~~g~ 391 (443)
|..+..+.+.+.++++.+.+||++++|++.+.....+ ...+.+. ++..++ .+|||++...|.
T Consensus 17 ~~~~~~~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~-i~~~~~--~~kpVia~v~G~ 81 (177)
T cd07014 17 DTQGNVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAE-LAAARA--AGKPVVASGGGN 81 (177)
T ss_pred CCCCCcCHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHH-HHHHHh--CCCCEEEEECCc
Confidence 4556667778999999999999999999854332212 1222222 222333 589999877655
No 122
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=78.30 E-value=4.9 Score=44.06 Aligned_cols=78 Identities=22% Similarity=0.393 Sum_probs=49.9
Q ss_pred CCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEE--EccCCC-CChHHHHHHH
Q psy12143 295 DGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMV--NIFGGI-MRCDVIAEGI 371 (443)
Q Consensus 295 ~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv--~i~~~~-~~~~~~a~~i 371 (443)
.++|++|+-.|-.. .|. ++ .+....+.+.+.++...+||+|++|++ +.+||. ..++.+.+.|
T Consensus 307 ~~~vavI~~~G~I~---------~~~---~~---~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~~i 371 (584)
T TIGR00705 307 QDKIGIVHLEGPIA---------DGR---DT---EGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRREL 371 (584)
T ss_pred CCeEEEEEEEEEEc---------CCC---Cc---ccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHHHH
Confidence 45699998777421 010 11 123345678899999999999999998 456663 3345555555
Q ss_pred HHHHHHcCCCCcEEEEeCC
Q psy12143 372 IAAAQELSLKIPIICRLQG 390 (443)
Q Consensus 372 ~~~~~~~~~~kpiv~~~~g 390 (443)
.++ ++ .+|||++.+.+
T Consensus 372 ~~~-~~--~gKPVva~~~g 387 (584)
T TIGR00705 372 ARA-QA--RGKPVIVSMGA 387 (584)
T ss_pred HHH-Hh--CCCcEEEEECC
Confidence 443 33 36999987654
No 123
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=77.83 E-value=6.9 Score=37.24 Aligned_cols=56 Identities=13% Similarity=0.255 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHcCCCccEEEEEcc--CC-CCChHHHHHHHHHHHHHcCCCCcEEEEeC
Q psy12143 331 GATAAQVKEAFKIITADPKVCAIMVNIF--GG-IMRCDVIAEGIIAAAQELSLKIPIICRLQ 389 (443)
Q Consensus 331 ~~~~~~~~~al~~ll~dp~vd~vlv~i~--~~-~~~~~~~a~~i~~~~~~~~~~kpiv~~~~ 389 (443)
..+.+.+.++++.+.+||++++|++.+- ++ ....+++.+.|.++ ++ .+|||+++..
T Consensus 28 ~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~-~~--~~kpVia~~~ 86 (222)
T cd07018 28 ELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERF-RA--SGKPVIAYAD 86 (222)
T ss_pred CccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHH-HH--hCCeEEEEeC
Confidence 3445668999999999999999998543 33 23345555555443 32 4799987543
No 124
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=77.73 E-value=69 Score=33.79 Aligned_cols=87 Identities=13% Similarity=0.104 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEe-CCC--------------CHHHHH
Q psy12143 333 TAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRL-QGT--------------NVDDAK 397 (443)
Q Consensus 333 ~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~-~g~--------------~~~~~~ 397 (443)
+.+...++.+.+.++ ++|+|++......+ . ..+++.++. .++|++.+- ..+ ...+..
T Consensus 48 ~~~~~~~~~~~~~~~-~~d~ii~~~~tf~~-~----~~~~~~~~~--~~~Pvll~a~~~~~~~~~~~~~~~s~~g~~~~~ 119 (452)
T cd00578 48 TPDEARKAAEEFNEA-NCDGLIVWMHTFGP-A----KMWIAGLSE--LRKPVLLLATQFNREIPDFMNLNQSACGLREFG 119 (452)
T ss_pred CHHHHHHHHHHHhhc-CCcEEEEccccccc-H----HHHHHHHHh--cCCCEEEEeCCCCCCCCchhhhhcchhhhHHHH
Confidence 556678888888776 89999984433221 1 233444555 479998653 221 123345
Q ss_pred HHHHHCCCCccc-CCCH--HHHHHHHHHHHHHH
Q psy12143 398 VLIASAAMKILP-CDNL--DEAARLAVKLSSIV 427 (443)
Q Consensus 398 ~~L~~~GiP~~~-f~s~--e~Av~al~~l~~~~ 427 (443)
..|++.|+|... +... ++..+.+..+.+..
T Consensus 120 ~~l~r~gi~~~~v~g~~~d~~~~~~i~~~~raa 152 (452)
T cd00578 120 NILARLGIPFKVVYGHWKDEDVLRKIESWARAA 152 (452)
T ss_pred HHHHHcCCceeEEECCCCCHHHHHHHHHHHHHH
Confidence 688999999632 2221 45556565555443
No 125
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=76.55 E-value=6.3 Score=26.65 Aligned_cols=33 Identities=39% Similarity=0.460 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKK 70 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~ 70 (443)
.++.+-++.|..+||++++.. .+.+++.+.+..
T Consensus 4 Ws~~~L~~wL~~~gi~~~~~~--~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 4 WSDSDLKSWLKSHGIPVPKSA--KTRDELLKLAKK 36 (38)
T ss_pred CCHHHHHHHHHHcCCCCCCCC--CCHHHHHHHHHH
Confidence 466788999999999999877 678888777654
No 126
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=75.96 E-value=12 Score=35.05 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCC
Q psy12143 332 ATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQG 390 (443)
Q Consensus 332 ~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g 390 (443)
.+.+.+.++++.+.+||++++|++.+....... .-.+.|.++.+++..+|||+++..|
T Consensus 13 ~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~-~~~~~l~~~i~~~~~~kpvia~v~g 70 (207)
T TIGR00706 13 VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTV-VASEEIYEKLKKLKAKKPVVASMGG 70 (207)
T ss_pred cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCH-HHHHHHHHHHHHhcCCCCEEEEECC
Confidence 345678999999999999999998543221111 1224444444443235999986644
No 127
>PLN02775 Probable dihydrodipicolinate reductase
Probab=75.91 E-value=59 Score=32.40 Aligned_cols=125 Identities=10% Similarity=-0.019 Sum_probs=76.7
Q ss_pred cEEEEEcchhHHHHHHHHHHHcCCCCCCeee-----------ecCC-CC---HHHHHHHHHHHHcCCCccEEEEEccCCC
Q psy12143 297 SIGCLVNGAGLAMATMDIIKLHGGEPANFLD-----------VGGG-AT---AAQVKEAFKIITADPKVCAIMVNIFGGI 361 (443)
Q Consensus 297 ~iaiitngGG~g~la~D~~~~~G~~~~NPvD-----------l~g~-~~---~~~~~~al~~ll~dp~vd~vlv~i~~~~ 361 (443)
+|.|....|=+|-.++.++...+....--+| +.|. .. ++....++..+.+ ...|.|+|.+...
T Consensus 13 ~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~-~~~~~VvIDFT~P- 90 (286)
T PLN02775 13 PIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKA-EYPNLIVVDYTLP- 90 (286)
T ss_pred eEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhc-cCCCEEEEECCCh-
Confidence 6888888899999999998886644322233 2221 00 1234555544433 2466677755432
Q ss_pred CChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHHHHHhH
Q psy12143 362 MRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSSIVGL 429 (443)
Q Consensus 362 ~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~~~~~ 429 (443)
......++.+.+ .++|+|+...|-..++-.+..++.++|+..-+++.-.+..|.++++....
T Consensus 91 ----~a~~~~~~~~~~--~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSiGv~ll~~l~~~aA~ 152 (286)
T PLN02775 91 ----DAVNDNAELYCK--NGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGKQVVAFQAAMEIMAE 152 (286)
T ss_pred ----HHHHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHHHHH
Confidence 334455666666 57999887665544433344445689987777788788887777766543
No 128
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=74.55 E-value=9.5 Score=35.97 Aligned_cols=58 Identities=22% Similarity=0.277 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHcCCCccEEEEEccCCCCC---hHHHHHHHHHHHHHcCCCCcEEEEeCCC
Q psy12143 331 GATAAQVKEAFKIITADPKVCAIMVNIFGGIMR---CDVIAEGIIAAAQELSLKIPIICRLQGT 391 (443)
Q Consensus 331 ~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~---~~~~a~~i~~~~~~~~~~kpiv~~~~g~ 391 (443)
....+.+.++++.+.+||++++|++.++....+ .+++.+.| +..+. .+|||++...|.
T Consensus 20 ~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l-~~~~~--~~kpVia~v~g~ 80 (211)
T cd07019 20 NVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAEL-AAARA--AGKPVVVSAGGA 80 (211)
T ss_pred ccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHH-HHHHh--CCCCEEEEECCe
Confidence 334567999999999999999999854433222 23333332 22333 479999876554
No 129
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=74.45 E-value=47 Score=32.85 Aligned_cols=83 Identities=12% Similarity=0.158 Sum_probs=52.2
Q ss_pred CCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHH-HHHcCCCCcEEEEeCCCCHHHHH
Q psy12143 322 PANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAA-AQELSLKIPIICRLQGTNVDDAK 397 (443)
Q Consensus 322 ~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~-~~~~~~~kpiv~~~~g~~~~~~~ 397 (443)
+--|+|=-|+.+.+.+.+-++.+.+..++++|+++-..|. .+.++- ..+++. .+..+.+.||++..+..+..++.
T Consensus 11 ~~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr-~~~~~~~~~~~~~~~~viagvg~~~t~~ai 89 (293)
T PRK04147 11 LLTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEK-KQVLEIVAEEAKGKVKLIAQVGSVNTAEAQ 89 (293)
T ss_pred eECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHH-HHHHHHHHHHhCCCCCEEecCCCCCHHHHH
Confidence 3467777889999999999999887578999998654442 112222 223332 22323457888866654444443
Q ss_pred ---HHHHHCCC
Q psy12143 398 ---VLIASAAM 405 (443)
Q Consensus 398 ---~~L~~~Gi 405 (443)
+..++.|+
T Consensus 90 ~~a~~a~~~Ga 100 (293)
T PRK04147 90 ELAKYATELGY 100 (293)
T ss_pred HHHHHHHHcCC
Confidence 46667775
No 130
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=74.14 E-value=61 Score=31.64 Aligned_cols=102 Identities=11% Similarity=0.099 Sum_probs=61.1
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCC-C--CChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHH--
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGG-I--MRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAK-- 397 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~-~--~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~-- 397 (443)
--|.|=.|+.+.+.+.+-++.+.+. ++++++++-..| . ...++-.+-+..+.+..+.+.||++..+.....+..
T Consensus 6 ~TPf~~dg~iD~~~~~~~i~~l~~~-Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~ 84 (281)
T cd00408 6 VTPFTADGEVDLDALRRLVEFLIEA-GVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIEL 84 (281)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHHc-CCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHH
Confidence 3577777899999999999998874 899999865444 2 222332232222333333468888876655444443
Q ss_pred -HHHHHCCC-------CcccCCCHHHHHHHHHHHHH
Q psy12143 398 -VLIASAAM-------KILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 398 -~~L~~~Gi-------P~~~f~s~e~Av~al~~l~~ 425 (443)
+..++.|+ |.+...+.++.++-+.++++
T Consensus 85 a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~ 120 (281)
T cd00408 85 ARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVAD 120 (281)
T ss_pred HHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHh
Confidence 35566673 44333366666665555554
No 131
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=73.18 E-value=18 Score=34.15 Aligned_cols=60 Identities=22% Similarity=0.208 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCC
Q psy12143 330 GGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQG 390 (443)
Q Consensus 330 g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g 390 (443)
+....+.+.++++.+.+||++++|++.+....... .-.+.+.++..+...+|||++...|
T Consensus 23 ~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~-~~~~~l~~~l~~~~~~KpViA~v~g 82 (214)
T cd07022 23 GLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEV-AGVFELADAIRAARAGKPIVAFVNG 82 (214)
T ss_pred CcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcH-HHHHHHHHHHHHHhcCCCEEEEECC
Confidence 34455678999999999999999998543221111 1123344444443226999987654
No 132
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=72.98 E-value=26 Score=31.20 Aligned_cols=112 Identities=21% Similarity=0.267 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHcCCCCCCeeeec-CCCCHHHHHHHHHHHHcCCCccEEEEE--ccCCCCC-hH----HHHHHHHHHHHHc
Q psy12143 307 LAMATMDIIKLHGGEPANFLDVG-GGATAAQVKEAFKIITADPKVCAIMVN--IFGGIMR-CD----VIAEGIIAAAQEL 378 (443)
Q Consensus 307 ~g~la~D~~~~~G~~~~NPvDl~-g~~~~~~~~~al~~ll~dp~vd~vlv~--i~~~~~~-~~----~~a~~i~~~~~~~ 378 (443)
+---+.+.+..+|.+..|.--++ .++.. +--+++.+++..++|++++. +.-|.+. .+ .+.+++.+..-+
T Consensus 21 ll~~a~~~l~~~g~~~~~i~~~~VPGa~E--lP~a~~~l~~~~~~Davi~lG~VI~G~T~H~~~v~~~v~~gl~~lsl~- 97 (144)
T PF00885_consen 21 LLEGALEELKRHGVAEENIEVIRVPGAFE--LPLAAKRLAESGRYDAVIALGCVIRGETDHFEYVANAVSRGLMDLSLE- 97 (144)
T ss_dssp HHHHHHHHHHHTTTTGGCEEEEEESSGGG--HHHHHHHHHHCSTESEEEEEEEEE--SSTHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCCccceEEEEcCCHHH--HHHHHHHHhcccCccEEEEeccccCCCchHHHHHHHHHHHHHHHHhcc-
Confidence 33346788888887666554443 22222 45567777788899999972 3334333 33 444555555444
Q ss_pred CCCCcEEEEe-CCCCHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHHHHH
Q psy12143 379 SLKIPIICRL-QGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSSIV 427 (443)
Q Consensus 379 ~~~kpiv~~~-~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~~~ 427 (443)
+++||.... ...+.+++.++ .|.-. .+--.+|+++...|.++.
T Consensus 98 -~~~PV~~gvlt~~~~eqa~~R---~~~~~--~nkG~eaA~aal~m~~l~ 141 (144)
T PF00885_consen 98 -YGIPVIFGVLTPDTEEQALER---AGGKA--GNKGREAAEAALEMAKLL 141 (144)
T ss_dssp -HTSEEEEEEEEESSHHHHHHH---CEETT--EEHHHHHHHHHHHHHHHH
T ss_pred -CCccEEEEecCCCCHHHHHHH---hcchh--hhhHHHHHHHHHHHHHHH
Confidence 579998644 33445555443 33222 344567777777776654
No 133
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=71.13 E-value=12 Score=39.60 Aligned_cols=84 Identities=21% Similarity=0.220 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCC--------HHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEe--CC
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKT--------KKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMV--DT 105 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s--------~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~--~s 105 (443)
|+. +-+++.++| +|.++.++. .-++.+.+..--- .+|+||....||+ ||.++ .+
T Consensus 298 Lt~-ee~~~I~~H---vP~T~~l~~~~~~~~g~~~dL~~~~~a~r~-~lVLKP~D~Ygg~-----------GV~~G~e~~ 361 (445)
T PF14403_consen 298 LTA-EERAFIRRH---VPWTRLLTAGRTTYQGEDVDLVEFAIANRD-RLVLKPNDEYGGK-----------GVYIGWETS 361 (445)
T ss_pred CCH-HHHHHHHHh---CCceEEEcCccccccccchhHHHHHHhchh-cEEeccccccCCC-----------CeEECCcCC
Confidence 444 455666663 456666654 2233332222222 6899997544443 78887 47
Q ss_pred HHHHHHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEE
Q psy12143 106 PEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYF 150 (443)
Q Consensus 106 ~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~v 150 (443)
+++.+++.++.++ +++++|+++....|-+.
T Consensus 362 ~eeW~~~l~~a~~---------------~~yilQe~v~~~~~~~~ 391 (445)
T PF14403_consen 362 PEEWEAALEEAAR---------------EPYILQEYVRPPREPMP 391 (445)
T ss_pred HHHHHHHHHHHhc---------------CCcEEEEEecCCccccc
Confidence 8888888777542 36899999976555444
No 134
>PLN02417 dihydrodipicolinate synthase
Probab=70.65 E-value=83 Score=30.98 Aligned_cols=103 Identities=11% Similarity=-0.056 Sum_probs=61.1
Q ss_pred CCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHH
Q psy12143 322 PANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKV 398 (443)
Q Consensus 322 ~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~ 398 (443)
+-.|.|=-|+.+.+.+.+-++.+++ .++++|+++-..|. .+.++-.+.+..+.+....+.||++..+..+..++++
T Consensus 9 ~~TPf~~~g~iD~~~~~~~i~~l~~-~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~ 87 (280)
T PLN02417 9 IKTPYLPDGRFDLEAYDSLVNMQIE-NGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIH 87 (280)
T ss_pred eeCCcCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHH
Confidence 3467777789999999999999886 68999998544432 2223333333233333334578988777665556544
Q ss_pred ---HHHHCCC-------CcccCCCHHHHHHHHHHHHH
Q psy12143 399 ---LIASAAM-------KILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 399 ---~L~~~Gi-------P~~~f~s~e~Av~al~~l~~ 425 (443)
..++.|. |.|.-.+.++.++-+..+++
T Consensus 88 ~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~ 124 (280)
T PLN02417 88 ATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLD 124 (280)
T ss_pred HHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHh
Confidence 4456663 54322344444444444433
No 135
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=70.36 E-value=40 Score=35.44 Aligned_cols=116 Identities=22% Similarity=0.234 Sum_probs=64.8
Q ss_pred CCcEEEEEcchhHHHHHHHHHHHcCCC-CCCeeee-----cCCCCHHHHHHHHHHHHcCCCccEEEEEccCC-CCCh-HH
Q psy12143 295 DGSIGCLVNGAGLAMATMDIIKLHGGE-PANFLDV-----GGGATAAQVKEAFKIITADPKVCAIMVNIFGG-IMRC-DV 366 (443)
Q Consensus 295 ~g~iaiitngGG~g~la~D~~~~~G~~-~~NPvDl-----~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~-~~~~-~~ 366 (443)
-.+|||||...|+++ -|.+....-. |.--+.+ =|.-.+....++++.+...+ +|.|++.=.|| ..+. .-
T Consensus 135 p~~I~viTs~~gAa~--~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~-~Dviii~RGGGS~eDL~~F 211 (438)
T PRK00286 135 PKRIGVITSPTGAAI--RDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARG-EDVLIVARGGGSLEDLWAF 211 (438)
T ss_pred CCEEEEEeCCccHHH--HHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCC-CCEEEEecCCCCHHHhhcc
Confidence 467999999998875 5777655522 1111222 23333455788888876544 89988754444 2111 00
Q ss_pred HHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcccCCCHHHHHHHH
Q psy12143 367 IAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLA 420 (443)
Q Consensus 367 ~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al 420 (443)
--+.+++++.+ .+.||+.-.+-....--.+.-.+.- ++||..|++.+
T Consensus 212 n~e~v~~ai~~--~~~Pvis~IGHE~D~tl~D~vAd~r-----a~TPtaaae~~ 258 (438)
T PRK00286 212 NDEAVARAIAA--SRIPVISAVGHETDFTIADFVADLR-----APTPTAAAELA 258 (438)
T ss_pred CcHHHHHHHHc--CCCCEEEeccCCCCccHHHHhhhcc-----CCChHHHHHHh
Confidence 01455555555 5799987666442222223332222 57788877744
No 136
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=70.23 E-value=79 Score=28.11 Aligned_cols=97 Identities=19% Similarity=0.240 Sum_probs=53.6
Q ss_pred cEEEEEcc------hhHHHHHHHHHHHcCCCCCCee--eecCCCCHHHHHHHHHHHHcCCCccEEEE--EccCC-CCChH
Q psy12143 297 SIGCLVNG------AGLAMATMDIIKLHGGEPANFL--DVGGGATAAQVKEAFKIITADPKVCAIMV--NIFGG-IMRCD 365 (443)
Q Consensus 297 ~iaiitng------GG~g~la~D~~~~~G~~~~NPv--Dl~g~~~~~~~~~al~~ll~dp~vd~vlv--~i~~~-~~~~~ 365 (443)
||+|+... -.+---+.|.+..+|.+..|.- .+-|. . .+--+++.+++..++|+++. .+.-| ....+
T Consensus 9 ri~IV~s~fn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGa-~--EiP~a~~~l~~s~~~DavIaLG~VIrGeT~H~e 85 (141)
T PLN02404 9 RFGVVVARFNEIITKNLLEGALETFKRYSVKEENIDVVWVPGS-F--EIPVVAQRLAKSGKYDAILCIGAVIRGDTTHYD 85 (141)
T ss_pred EEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEEcCcH-H--HHHHHHHHHHhcCCCCEEEEEEEEEeCCCchhH
Confidence 56666432 2344446778888887654432 22222 2 23445566677788999997 33333 34344
Q ss_pred ----HHHHHHHHHHHHcCCCCcEEEEeCCC-CHHHHHH
Q psy12143 366 ----VIAEGIIAAAQELSLKIPIICRLQGT-NVDDAKV 398 (443)
Q Consensus 366 ----~~a~~i~~~~~~~~~~kpiv~~~~g~-~~~~~~~ 398 (443)
.++++|.+..-+ .++||.....++ +.+.+++
T Consensus 86 ~V~~~v~~gl~~vsl~--~~~PV~~GVLt~~~~eQA~~ 121 (141)
T PLN02404 86 AVANSAASGVLSAGLN--SGVPCIFGVLTCDDMEQALN 121 (141)
T ss_pred HHHHHHHHHHHHHHhc--cCCCEEEEEcCCCCHHHHHH
Confidence 444555555444 689998755433 4444443
No 137
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=70.01 E-value=70 Score=31.96 Aligned_cols=102 Identities=11% Similarity=0.098 Sum_probs=59.5
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHH--
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAK-- 397 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~-- 397 (443)
--|+|--|..+.+.+.+.++.+.+.. +|+|+++-++|. ...++-.+.+..+.+..+.+.||++..++++..++.
T Consensus 13 vTPF~~dg~vD~~a~~~lv~~li~~G-v~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~l 91 (299)
T COG0329 13 VTPFDEDGSVDEEALRRLVEFLIAAG-VDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIEL 91 (299)
T ss_pred ccCCCCCCCcCHHHHHHHHHHHHHcC-CCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHH
Confidence 34555557789899999999998754 999998655442 112332222222222223468898877776656654
Q ss_pred -HHHHHCCC-------CcccCCCHHHHHHHHHHHHH
Q psy12143 398 -VLIASAAM-------KILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 398 -~~L~~~Gi-------P~~~f~s~e~Av~al~~l~~ 425 (443)
+..++.|+ |+|.-.+.+...+-+.++++
T Consensus 92 ak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~ 127 (299)
T COG0329 92 AKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAE 127 (299)
T ss_pred HHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHH
Confidence 35566663 55444454544444444443
No 138
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=69.80 E-value=88 Score=28.82 Aligned_cols=120 Identities=17% Similarity=0.099 Sum_probs=61.9
Q ss_pred CcEEEEEcchhHHH--HHHHHHHHcCCCC-------------CCe-eeecCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q psy12143 296 GSIGCLVNGAGLAM--ATMDIIKLHGGEP-------------ANF-LDVGGGATAAQVKEAFKIITADPKVCAIMVNIFG 359 (443)
Q Consensus 296 g~iaiitngGG~g~--la~D~~~~~G~~~-------------~NP-vDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~ 359 (443)
.++.+++.||-.|+ .+++.+.+.|+.. .|| +|..-.. ..+..=-+.+.+ .-|++++ ++|
T Consensus 31 ~g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~i~~--~~~~~Rk~~m~~--~sda~I~-lPG 105 (178)
T TIGR00730 31 QGWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTELIEV--NGMHERKAMMAE--LADAFIA-MPG 105 (178)
T ss_pred CCCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCceEEE--CCHHHHHHHHHH--hCCEEEE-cCC
Confidence 45777776653555 4677777777542 222 2111000 111111122222 2356554 677
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCcEEEEeC-CCC--HHHHHHHHHHCCC-------CcccCCCHHHHHHHHH
Q psy12143 360 GIMRCDVIAEGIIAAAQELSLKIPIICRLQ-GTN--VDDAKVLIASAAM-------KILPCDNLDEAARLAV 421 (443)
Q Consensus 360 ~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~-g~~--~~~~~~~L~~~Gi-------P~~~f~s~e~Av~al~ 421 (443)
+....+++.+.+.-..-. .++||+++.-. |-. -.+-.+.+.+.|. .+++.+|++++++.+.
T Consensus 106 G~GTL~El~e~~~~~qlg-~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~~~~~~d~~~e~~~~i~ 176 (178)
T TIGR00730 106 GFGTLEELFEVLTWAQLG-IHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLKLIHVVSRPDELIEQVQ 176 (178)
T ss_pred CcchHHHHHHHHHHHHcC-CCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcCcEEEcCCHHHHHHHHH
Confidence 766677877766432211 25799887543 221 1223455666663 2234789999888764
No 139
>PRK06091 membrane protein FdrA; Validated
Probab=69.01 E-value=30 Score=37.65 Aligned_cols=100 Identities=19% Similarity=0.256 Sum_probs=63.1
Q ss_pred CeeeecCCCCHH--------H--HHHHHHHHHcCCCccEEEEEccCC-C---CChHHHHHHHHHHHHHc--CCCCcEEEE
Q psy12143 324 NFLDVGGGATAA--------Q--VKEAFKIITADPKVCAIMVNIFGG-I---MRCDVIAEGIIAAAQEL--SLKIPIICR 387 (443)
Q Consensus 324 NPvDl~g~~~~~--------~--~~~al~~ll~dp~vd~vlv~i~~~-~---~~~~~~a~~i~~~~~~~--~~~kpiv~~ 387 (443)
-.+|++-+...+ | =.+-+....+||++..||+.+..| . .....++..|.++.... +++.++|+.
T Consensus 374 ~~iDlGdD~~T~GrpHPMIDp~~R~~~~~~~a~dp~~~VillD~vlGyGah~dpa~~l~~ai~~~~~~~~~~r~l~~v~~ 453 (555)
T PRK06091 374 QIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQVRVLLLDVVIGFGATADPAGSLVSAIQKACAARADGQPLYAIAT 453 (555)
T ss_pred eEEecCcccccCCCCCCCcChHHHHHHHHHhccCCcceEEEEEeeeccCCCCChHHHHHHHHHHHHhhhhcCCceEEEEE
Confidence 468998766532 2 234455567899999999843322 2 22345566666553211 223455544
Q ss_pred eCCC-----CHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHHH
Q psy12143 388 LQGT-----NVDDAKVLIASAAMKILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 388 ~~g~-----~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~ 425 (443)
..|+ +..+-.+.|+++|+-+ |+|-.+|++....+.+
T Consensus 454 v~GT~~DpQ~~~~q~~~L~~aGv~v--~~sn~~a~~~a~~~~~ 494 (555)
T PRK06091 454 VTGTERDPQCRSQQIATLEDAGIAV--VDSLPEATLLAAALIR 494 (555)
T ss_pred EeCCCCCCcCHHHHHHHHHhCCeEE--EcCcHHHHHHHHHHhh
Confidence 4443 2345578999999988 9999999998777764
No 140
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=68.93 E-value=89 Score=28.18 Aligned_cols=124 Identities=22% Similarity=0.245 Sum_probs=68.5
Q ss_pred CcEEEEEcc------hhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEE--ccCC-CCChH-
Q psy12143 296 GSIGCLVNG------AGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVN--IFGG-IMRCD- 365 (443)
Q Consensus 296 g~iaiitng------GG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~--i~~~-~~~~~- 365 (443)
-||+||... ..+---+.+.+..+|.+..|.--++ =+-.-..--+++.+++..++|+++.. +.-| ....+
T Consensus 13 ~riaIV~s~~n~~i~~~l~~ga~~~l~~~gv~~~~i~v~~-VPGa~EiP~a~~~l~~~~~~DavIalG~VIrG~T~H~e~ 91 (154)
T PRK00061 13 LRIGIVVARFNDFITDALLEGALDALKRHGVSEENIDVVR-VPGAFEIPLAAKKLAESGKYDAVIALGAVIRGETPHFDY 91 (154)
T ss_pred CEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEE-CCCHHHHHHHHHHHHHcCCCCEEEEEeeEEcCCCchHHH
Confidence 367777532 2344456677888886555543332 12222245556777777889999972 3233 33334
Q ss_pred ---HHHHHHHHHHHHcCCCCcEEEEeC-CCCHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHHHHH
Q psy12143 366 ---VIAEGIIAAAQELSLKIPIICRLQ-GTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSSIV 427 (443)
Q Consensus 366 ---~~a~~i~~~~~~~~~~kpiv~~~~-g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~~~ 427 (443)
.++++|.+..-+ .++||..... ..+.+.+.++-.. -. .+-=.+|+++..++.++.
T Consensus 92 V~~~v~~gl~~v~l~--~~~PV~~GVLt~~~~eQa~~R~~~---~~--~nkG~eaa~aal~m~~l~ 150 (154)
T PRK00061 92 VANEVAKGLADVSLE--TGVPVGFGVLTTDTIEQAIERAGT---KA--GNKGAEAALAALEMANLL 150 (154)
T ss_pred HHHHHHHHHHHHHhc--cCCCEEEEecCCCCHHHHHHHhCc---cc--cccHHHHHHHHHHHHHHH
Confidence 444555555433 6899997544 4455555544431 11 233456777767776654
No 141
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=68.89 E-value=22 Score=36.15 Aligned_cols=91 Identities=18% Similarity=0.181 Sum_probs=61.4
Q ss_pred HHHHHHCCCCCCCeeecCCHHHHHHHHHHc--CCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHHHhhc
Q psy12143 42 YTLLKEGGIPVPPFGVAKTKKEAGEIAKKL--NIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGD 119 (443)
Q Consensus 42 k~lL~~~GIpv~~~~~v~s~~ea~~~a~~l--g~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~l~~~ 119 (443)
..|-.+..=-|-++..+=|.++|..++..+ +. ||-+|+....+|+| -.++.|.+++..+...+-..
T Consensus 104 ~~fa~~~~~~vL~G~tvFs~~DA~~A~~~LL~~G-~VRlKp~~a~gG~G-----------Q~vv~~~~~Ld~~L~~~~~~ 171 (355)
T PF11379_consen 104 PAFAERVRDAVLPGYTVFSREDARRAARRLLRDG-PVRLKPVHATGGRG-----------QQVVADADELDAALAALDDA 171 (355)
T ss_pred HHHHHHHhhhccCCccccCHHHHHHHHHHHhccC-CeeeccCcccCCCC-----------ceEecCHHHHHHHHHcCCHH
Confidence 333333333355555566788998888876 33 99999976667764 45788999999888877544
Q ss_pred hhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEE
Q psy12143 120 YLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMM 154 (443)
Q Consensus 120 ~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~ 154 (443)
... -.|+.+|+-+..-.-++||-.+
T Consensus 172 ~l~----------~~GlVLE~~L~~~~T~SVGqv~ 196 (355)
T PF11379_consen 172 ELA----------RHGLVLEEDLEEVVTYSVGQVR 196 (355)
T ss_pred HHH----------hCCEEEecccCCCceeeEEEEE
Confidence 321 2578899888755666666554
No 142
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=68.69 E-value=17 Score=33.97 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHcCCCccEEEEEcc--CC-CCChHHHHHHHHHHHHHcCCCCcEEEEeCC
Q psy12143 331 GATAAQVKEAFKIITADPKVCAIMVNIF--GG-IMRCDVIAEGIIAAAQELSLKIPIICRLQG 390 (443)
Q Consensus 331 ~~~~~~~~~al~~ll~dp~vd~vlv~i~--~~-~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g 390 (443)
..+.+.+..+++.+.+||++.+|++.+. |+ ......+.+.+.. .++ .+|||++...|
T Consensus 16 ~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~-~~~--~~kpvia~v~g 75 (208)
T cd07023 16 GIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRR-LRK--AKKPVVASMGD 75 (208)
T ss_pred CCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHH-HHh--cCCcEEEEECC
Confidence 3455668999999999999999998443 33 2222333333222 222 47999986654
No 143
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=67.83 E-value=19 Score=32.02 Aligned_cols=54 Identities=28% Similarity=0.375 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHcCCCccEEEEE--ccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCC
Q psy12143 333 TAAQVKEAFKIITADPKVCAIMVN--IFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGT 391 (443)
Q Consensus 333 ~~~~~~~al~~ll~dp~vd~vlv~--i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~ 391 (443)
+.+.+...++.+.+|+++++|++. .+|+. . .-...|.++.++ .+|||+++..|.
T Consensus 12 ~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~--~-~~~~~i~~~l~~--~~kpvva~~~g~ 67 (161)
T cd00394 12 SADQLAAQIRFAEADNSVKAIVLEVNTPGGR--V-DAGMNIVDALQA--SRKPVIAYVGGQ 67 (161)
T ss_pred hHHHHHHHHHHHHhCCCCceEEEEEECCCcC--H-HHHHHHHHHHHH--hCCCEEEEECCh
Confidence 345578889999999999999884 34432 2 223556666666 359999887765
No 144
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=67.45 E-value=1e+02 Score=30.44 Aligned_cols=102 Identities=12% Similarity=0.096 Sum_probs=58.5
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHH--
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAK-- 397 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~-- 397 (443)
-.|.|=-|+.+.+.+.+-++.+++ .++++++++-..|. ...++-.+.+..+.+....+.||++..++.+..+.+
T Consensus 10 ~TPf~~dg~iD~~~l~~~i~~l~~-~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~ 88 (292)
T PRK03170 10 VTPFKEDGSVDFAALRKLVDYLIA-NGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIEL 88 (292)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHH-cCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHH
Confidence 467777789999999999999886 78999998644432 112222222222222222357888766654444443
Q ss_pred -HHHHHCCC-------CcccCCCHHHHHHHHHHHHH
Q psy12143 398 -VLIASAAM-------KILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 398 -~~L~~~Gi-------P~~~f~s~e~Av~al~~l~~ 425 (443)
+..++.|+ |.+.-.+.++.++-+.++++
T Consensus 89 a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~ 124 (292)
T PRK03170 89 TKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAE 124 (292)
T ss_pred HHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHh
Confidence 45666773 44222244554444444443
No 145
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=66.14 E-value=1.1e+02 Score=30.33 Aligned_cols=102 Identities=14% Similarity=0.102 Sum_probs=59.5
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCC-C--CChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHH--
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGG-I--MRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAK-- 397 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~-~--~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~-- 397 (443)
--|.|=-|+.+.+.+.+-++.+.+ .++++++++-..| . .+.++-.+-+..+.+....+.||++..+..+..++.
T Consensus 9 ~TPf~~dg~iD~~~l~~lv~~~~~-~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~ 87 (294)
T TIGR02313 9 ITPFKRNGDIDEEALRELIEFQIE-GGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLEL 87 (294)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHH
Confidence 467888899999999999999885 6899999854433 1 222333333322333333468898776655444443
Q ss_pred -HHHHHCCC-------CcccCCCHHHHHHHHHHHHH
Q psy12143 398 -VLIASAAM-------KILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 398 -~~L~~~Gi-------P~~~f~s~e~Av~al~~l~~ 425 (443)
+..++.|+ |+|.-.+.++-++-+..+++
T Consensus 88 a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~ 123 (294)
T TIGR02313 88 TKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVAD 123 (294)
T ss_pred HHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHH
Confidence 34556673 55323344444444444433
No 146
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=66.05 E-value=1.2e+02 Score=30.00 Aligned_cols=100 Identities=12% Similarity=0.091 Sum_probs=58.0
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHH-HHHcCCCCcEEEEeCCCCHHHHH-
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAA-AQELSLKIPIICRLQGTNVDDAK- 397 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~-~~~~~~~kpiv~~~~g~~~~~~~- 397 (443)
--|.|=-|..+.+.+.+-++.+.+...+|+|+++-..|. .+.++- +.+++. .+..+.+.||++..+..+..+..
T Consensus 9 ~TPf~~dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr-~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~ 87 (290)
T TIGR00683 9 LVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEK-KEIFRIAKDEAKDQIALIAQVGSVNLKEAVE 87 (290)
T ss_pred ecCCCCCCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHH-HHHHHHHHHHhCCCCcEEEecCCCCHHHHHH
Confidence 457777788998999999999887544999998544331 222222 233333 33333458998876654444443
Q ss_pred --HHHHHCCC-------CcccCCCHHHHHHHHHHH
Q psy12143 398 --VLIASAAM-------KILPCDNLDEAARLAVKL 423 (443)
Q Consensus 398 --~~L~~~Gi-------P~~~f~s~e~Av~al~~l 423 (443)
+..++.|+ |.|...+.++.++-+..+
T Consensus 88 la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v 122 (290)
T TIGR00683 88 LGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTI 122 (290)
T ss_pred HHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHH
Confidence 45566673 553333555444444443
No 147
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=65.84 E-value=1.1e+02 Score=29.97 Aligned_cols=102 Identities=10% Similarity=0.055 Sum_probs=58.6
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCC-C-CChHHHHHHHHHH-HHHcCCCCcEEEEeCCCCHHHHH--
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGG-I-MRCDVIAEGIIAA-AQELSLKIPIICRLQGTNVDDAK-- 397 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~-~-~~~~~~a~~i~~~-~~~~~~~kpiv~~~~g~~~~~~~-- 397 (443)
-.|+|=-|+.+.+.+.+-++.+.+ .++++++++-..| . ...++--..+++. .+....+.||++..+..+..+..
T Consensus 7 ~TPf~~~g~iD~~~~~~~i~~l~~-~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~ 85 (285)
T TIGR00674 7 ITPFKEDGSVDFAALEKLIDFQIE-NGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISL 85 (285)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHH
Confidence 457777789999999999998875 7899999854433 1 1122222233332 22223458888876655455544
Q ss_pred -HHHHHCCC-------CcccCCCHHHHHHHHHHHHH
Q psy12143 398 -VLIASAAM-------KILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 398 -~~L~~~Gi-------P~~~f~s~e~Av~al~~l~~ 425 (443)
+..++.|+ |.|.-.+.++.++-+..+++
T Consensus 86 a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~ 121 (285)
T TIGR00674 86 TKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAE 121 (285)
T ss_pred HHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHh
Confidence 34555663 54322355544444444443
No 148
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=64.59 E-value=1e+02 Score=27.28 Aligned_cols=109 Identities=23% Similarity=0.240 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcCCCCCCeeeec-CCCCHHHHHHHHHHHHcCCCccEEEE--EccCC-CCChH----HHHHHHHHHHHHcC
Q psy12143 308 AMATMDIIKLHGGEPANFLDVG-GGATAAQVKEAFKIITADPKVCAIMV--NIFGG-IMRCD----VIAEGIIAAAQELS 379 (443)
Q Consensus 308 g~la~D~~~~~G~~~~NPvDl~-g~~~~~~~~~al~~ll~dp~vd~vlv--~i~~~-~~~~~----~~a~~i~~~~~~~~ 379 (443)
---+.+.+..+|....|---++ ..+. ..--+.+.+++..++|++++ .+.-| ....+ .++++|.+..-+
T Consensus 19 ~~ga~~~l~~~g~~~~~i~v~~VPGa~--EiP~a~~~l~~~~~~DavI~LG~VIrG~T~H~e~v~~~v~~gl~~~sl~-- 94 (138)
T TIGR00114 19 LKGAIDALKRLGAEVDNIDVIWVPGAF--ELPLAVKKLAETGKYDAVIALGCVIRGGTPHFEYVADEAAKGIADLALD-- 94 (138)
T ss_pred HHHHHHHHHHcCCCccceEEEECCcHH--HHHHHHHHHHhcCCCCEEEEEeeEEeCCCchhHHHHHHHHHHHHHHHhh--
Confidence 3346677888886654432221 1111 23445566677788999997 23323 33334 444555555444
Q ss_pred CCCcEEEEeCCC-CHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHHH
Q psy12143 380 LKIPIICRLQGT-NVDDAKVLIASAAMKILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 380 ~~kpiv~~~~g~-~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~ 425 (443)
+++||.....++ +.+.+.. ..| +.. -.-=.+|+.+..++.+
T Consensus 95 ~~~PV~~GvLt~~~~eQa~~---R~~-~~~-~nkG~eaA~aal~m~~ 136 (138)
T TIGR00114 95 YDKPVIFGILTTGTIEQAIE---RAG-DKA-GNKGVEAAVAALEMAK 136 (138)
T ss_pred hCCCEEEEecCCCCHHHHHH---Hcc-ccc-cccHHHHHHHHHHHHh
Confidence 689999765444 4444333 334 220 1223455555555544
No 149
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=64.09 E-value=36 Score=35.38 Aligned_cols=82 Identities=23% Similarity=0.317 Sum_probs=56.0
Q ss_pred eEeecCCcEEEEEcchhHHHHHHHHHHHcCCCCCCee-eecCCCCHHHHHHHHHHHHcCCCccEEEE-EccC--CCCChH
Q psy12143 290 NYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFL-DVGGGATAAQVKEAFKIITADPKVCAIMV-NIFG--GIMRCD 365 (443)
Q Consensus 290 ~~~~~~g~iaiitngGG~g~la~D~~~~~G~~~~NPv-Dl~g~~~~~~~~~al~~ll~dp~vd~vlv-~i~~--~~~~~~ 365 (443)
+.++.+.+|.++.||- +|=--+|.++.+|+++...- +-+-.++++.+.++|+ ++|+++.|.+ |.-+ |..+
T Consensus 75 sl~~pgdkVLv~~nG~-FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~---~~~~~~~V~~vH~ETSTGvln-- 148 (383)
T COG0075 75 SLVEPGDKVLVVVNGK-FGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALD---KDPDIKAVAVVHNETSTGVLN-- 148 (383)
T ss_pred hccCCCCeEEEEeCCh-HHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHh---cCCCccEEEEEeccCcccccC--
Confidence 4566788898888776 99999999999997642221 1234556677777776 7999999887 4332 2222
Q ss_pred HHHHHHHHHHHHc
Q psy12143 366 VIAEGIIAAAQEL 378 (443)
Q Consensus 366 ~~a~~i~~~~~~~ 378 (443)
-.+.|.++++++
T Consensus 149 -pl~~I~~~~k~~ 160 (383)
T COG0075 149 -PLKEIAKAAKEH 160 (383)
T ss_pred -cHHHHHHHHHHc
Confidence 235667777774
No 150
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=62.86 E-value=1.5e+02 Score=29.72 Aligned_cols=74 Identities=11% Similarity=0.120 Sum_probs=45.2
Q ss_pred cCCCCHHHHHHHHHHHHcCCCccEEEEEccCC-C--CChHHHHHHHHHH-HHHcCCCCcEEEEeCCCCHHHHH---HHHH
Q psy12143 329 GGGATAAQVKEAFKIITADPKVCAIMVNIFGG-I--MRCDVIAEGIIAA-AQELSLKIPIICRLQGTNVDDAK---VLIA 401 (443)
Q Consensus 329 ~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~-~--~~~~~~a~~i~~~-~~~~~~~kpiv~~~~g~~~~~~~---~~L~ 401 (443)
.|+.+.+.+.+-++.+.+ .++++|+++-..| . ...++- +.+++. .+....+.||++..+..+..++. +..+
T Consensus 23 ~g~iD~~~l~~lv~~li~-~Gv~Gi~v~GstGE~~~Lt~eEr-~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~ 100 (309)
T cd00952 23 TDTVDLDETARLVERLIA-AGVDGILTMGTFGECATLTWEEK-QAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALL 100 (309)
T ss_pred CCCcCHHHHHHHHHHHHH-cCCCEEEECcccccchhCCHHHH-HHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHH
Confidence 367888888998988876 7899999854433 2 222222 233332 33333468999877655455554 3455
Q ss_pred HCC
Q psy12143 402 SAA 404 (443)
Q Consensus 402 ~~G 404 (443)
+.|
T Consensus 101 ~~G 103 (309)
T cd00952 101 DLG 103 (309)
T ss_pred HhC
Confidence 566
No 151
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=59.63 E-value=1.7e+02 Score=29.09 Aligned_cols=102 Identities=17% Similarity=0.162 Sum_probs=59.4
Q ss_pred CCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHH-
Q psy12143 322 PANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAK- 397 (443)
Q Consensus 322 ~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~- 397 (443)
+--|+|=-|+.+.+.+.+-++.+.+ .++|+|+++-..|. ...++-.+.+..+.+....+.||++..+. +..+.+
T Consensus 15 ~vTPf~~dg~iD~~~l~~li~~l~~-~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~-~t~~~i~ 92 (303)
T PRK03620 15 PVTPFDADGSFDEAAYREHLEWLAP-YGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG-GTAQAIE 92 (303)
T ss_pred eeCCCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHH
Confidence 3567777789999999999998876 68999998644432 22233222222233333346899876554 445544
Q ss_pred --HHHHHCCC-------CcccCCCHHHHHHHHHHHHH
Q psy12143 398 --VLIASAAM-------KILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 398 --~~L~~~Gi-------P~~~f~s~e~Av~al~~l~~ 425 (443)
+..++.|+ |.|...+.++..+-+..+++
T Consensus 93 ~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~ 129 (303)
T PRK03620 93 YAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCK 129 (303)
T ss_pred HHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 45556663 54323455554444444444
No 152
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=59.28 E-value=1.1e+02 Score=26.04 Aligned_cols=88 Identities=15% Similarity=0.043 Sum_probs=52.7
Q ss_pred HHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEe
Q psy12143 309 MATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRL 388 (443)
Q Consensus 309 ~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~ 388 (443)
.+.+..+...|-+ -++++.+.+.+.+..+... -+.|.|.+++.. ......++.+++.+++.+.+++. +..
T Consensus 17 ~~~~~~l~~~G~~---vi~lG~~vp~e~~~~~a~~----~~~d~V~iS~~~--~~~~~~~~~~~~~L~~~~~~~i~-i~~ 86 (122)
T cd02071 17 KVIARALRDAGFE---VIYTGLRQTPEEIVEAAIQ----EDVDVIGLSSLS--GGHMTLFPEVIELLRELGAGDIL-VVG 86 (122)
T ss_pred HHHHHHHHHCCCE---EEECCCCCCHHHHHHHHHH----cCCCEEEEcccc--hhhHHHHHHHHHHHHhcCCCCCE-EEE
Confidence 4566777777744 4688888887765554432 245677663332 23345567777777775333332 344
Q ss_pred CCCCHHHHHHHHHHCCCC
Q psy12143 389 QGTNVDDAKVLIASAAMK 406 (443)
Q Consensus 389 ~g~~~~~~~~~L~~~GiP 406 (443)
+|....+....|.+.|+-
T Consensus 87 GG~~~~~~~~~~~~~G~d 104 (122)
T cd02071 87 GGIIPPEDYELLKEMGVA 104 (122)
T ss_pred ECCCCHHHHHHHHHCCCC
Confidence 454445557789999974
No 153
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=59.10 E-value=1.1e+02 Score=25.64 Aligned_cols=100 Identities=18% Similarity=0.185 Sum_probs=57.8
Q ss_pred HHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCC-CCcEEEE
Q psy12143 309 MATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSL-KIPIICR 387 (443)
Q Consensus 309 ~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~-~kpiv~~ 387 (443)
.+.++.+...|-++ ++++.+.+.+.+.+++. .-+.|.|.++... +.....+..+++.+++... +.+| .
T Consensus 17 ~~~~~~l~~~G~~V---~~lg~~~~~~~l~~~~~----~~~pdvV~iS~~~--~~~~~~~~~~i~~l~~~~~~~~~i--~ 85 (119)
T cd02067 17 NIVARALRDAGFEV---IDLGVDVPPEEIVEAAK----EEDADAIGLSGLL--TTHMTLMKEVIEELKEAGLDDIPV--L 85 (119)
T ss_pred HHHHHHHHHCCCEE---EECCCCCCHHHHHHHHH----HcCCCEEEEeccc--cccHHHHHHHHHHHHHcCCCCCeE--E
Confidence 46677888888665 78888877776655543 2345666654332 2233455677777777533 2333 3
Q ss_pred eCCCCHHHHHHHHHHCCCCcccCCCHHHHHHHH
Q psy12143 388 LQGTNVDDAKVLIASAAMKILPCDNLDEAARLA 420 (443)
Q Consensus 388 ~~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al 420 (443)
.+|......-+.+++.|+-. +|.+-.+|++.+
T Consensus 86 vGG~~~~~~~~~~~~~G~D~-~~~~~~~~~~~~ 117 (119)
T cd02067 86 VGGAIVTRDFKFLKEIGVDA-YFGPATEAVEVL 117 (119)
T ss_pred EECCCCChhHHHHHHcCCeE-EECCHHHHHHHH
Confidence 33332222225788889753 366666666654
No 154
>PRK05849 hypothetical protein; Provisional
Probab=58.76 E-value=3.3e+02 Score=31.21 Aligned_cols=113 Identities=11% Similarity=0.095 Sum_probs=63.3
Q ss_pred CHHHHHHHHHH--CCCCCCCeeecCC------HHHHHHH-HHHcCCCeEEEEEeecCCCCCccccccCccCc--EEEe-C
Q psy12143 37 HEHVSYTLLKE--GGIPVPPFGVAKT------KKEAGEI-AKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGG--VKMV-D 104 (443)
Q Consensus 37 ~e~~ak~lL~~--~GIpv~~~~~v~s------~~ea~~~-a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GG--V~l~-~ 104 (443)
++.+.-..|+. .|.++|+..+++- .+.+.+. ...++..||+|+..... -.+. ..|-. |- -.++ .
T Consensus 10 ~KA~tL~~L~~~~~~~~i~~~~v~~~~e~~~~~~~~~~~i~~~~~~~~laVRSSa~~-ED~~--~~S~A-Gq~~S~lnV~ 85 (783)
T PRK05849 10 TKAETLANLQPILKKAKILPLLLFSVREWLSNKDKVLEEIQNSFPADKLIVRSSSRS-EDSS--SSSNA-GAFLSILNVN 85 (783)
T ss_pred hHHHHHHHHHhhhcCCCCCCeEEeCHHhhccCHHHHHHHHHHhcCCCeEEEECCCcc-cCCC--cCccc-cCceeEecCC
Confidence 34556666777 7888888877753 3333333 33333238999975321 0100 00100 21 2333 2
Q ss_pred --CHHHHHHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCc
Q psy12143 105 --TPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGP 161 (443)
Q Consensus 105 --s~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gp 161 (443)
+.+++.+++++.+.+.. . .+-..|+||+|+....=-=|..++||..+.|
T Consensus 86 ~~~~~~L~~AI~~V~aS~~----~----~~~~aVlVQ~MV~~~~~SGV~FTrdP~tg~~ 136 (783)
T PRK05849 86 ADSKDQLLKAIEKVIASYG----T----SKDDEILVQPMLEDIVLSGVAMSRDPESGAP 136 (783)
T ss_pred CCcHHHHHHHHHHHHHhhC----C----CCCCeEEEEeCccCCCceEEEEECCCCCCCC
Confidence 23489999888877641 0 1225799999996312223788899986434
No 155
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=58.48 E-value=1.3e+02 Score=26.41 Aligned_cols=104 Identities=15% Similarity=0.130 Sum_probs=62.4
Q ss_pred HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCC-CCcEEEEe
Q psy12143 310 ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSL-KIPIICRL 388 (443)
Q Consensus 310 la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~-~kpiv~~~ 388 (443)
+.+.+++..|.+ -+|++.+.+.+.+.++... -++|.|.+++..+ .....++.+++.+++.+. +.+|++.-
T Consensus 22 iv~~~lr~~G~e---Vi~LG~~vp~e~i~~~a~~----~~~d~V~lS~~~~--~~~~~~~~~~~~L~~~~~~~~~i~vGG 92 (137)
T PRK02261 22 ILDRALTEAGFE---VINLGVMTSQEEFIDAAIE----TDADAILVSSLYG--HGEIDCRGLREKCIEAGLGDILLYVGG 92 (137)
T ss_pred HHHHHHHHCCCE---EEECCCCCCHHHHHHHHHH----cCCCEEEEcCccc--cCHHHHHHHHHHHHhcCCCCCeEEEEC
Confidence 455677777744 5788889998877666533 3567777744333 233445666676776533 33333321
Q ss_pred C---CC-CHHHHHHHHHHCCCCcccCC---CHHHHHHHHHHH
Q psy12143 389 Q---GT-NVDDAKVLIASAAMKILPCD---NLDEAARLAVKL 423 (443)
Q Consensus 389 ~---g~-~~~~~~~~L~~~GiP~~~f~---s~e~Av~al~~l 423 (443)
. ++ ...+..+.|++.|+-. +|+ ++++.+..+.+.
T Consensus 93 ~~~~~~~~~~~~~~~l~~~G~~~-vf~~~~~~~~i~~~l~~~ 133 (137)
T PRK02261 93 NLVVGKHDFEEVEKKFKEMGFDR-VFPPGTDPEEAIDDLKKD 133 (137)
T ss_pred CCCCCccChHHHHHHHHHcCCCE-EECcCCCHHHHHHHHHHH
Confidence 1 11 2455678999999752 376 677777666554
No 156
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=57.03 E-value=1.5e+02 Score=29.46 Aligned_cols=123 Identities=14% Similarity=0.061 Sum_probs=68.9
Q ss_pred cEEEEEcchhHHHHHHHHHHHcCCCCC-----------CeeeecCC-CC---HHHHHHHHHHHHcCCCccEEEEEccCCC
Q psy12143 297 SIGCLVNGAGLAMATMDIIKLHGGEPA-----------NFLDVGGG-AT---AAQVKEAFKIITADPKVCAIMVNIFGGI 361 (443)
Q Consensus 297 ~iaiitngGG~g~la~D~~~~~G~~~~-----------NPvDl~g~-~~---~~~~~~al~~ll~dp~vd~vlv~i~~~~ 361 (443)
+|.|....|=+|-.++.++...|.+.. +..++.|. .. ++.....++.+++. ..|.|+|-+..+
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~-~~d~VvIDFT~P- 79 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAK-YPELICIDYTHP- 79 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhh-cCCEEEEECCCh-
Confidence 467777778888888888887664321 22222221 00 01113445555533 256677755432
Q ss_pred CChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHHHHH
Q psy12143 362 MRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSSIV 427 (443)
Q Consensus 362 ~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~~~ 427 (443)
......++.+.+ .++|+|+...|-..++-.++-+..++|+..-+++.-.+..+.++++..
T Consensus 80 ----~~~~~n~~~~~~--~gv~~ViGTTG~~~~~~~~l~~~~~i~~l~apNfSiGv~ll~~~~~~a 139 (275)
T TIGR02130 80 ----SAVNDNAAFYGK--HGIPFVMGTTGGDREALAKLVADAKHPAVIAPNMAKQIVAFLAAIEFL 139 (275)
T ss_pred ----HHHHHHHHHHHH--CCCCEEEcCCCCCHHHHHHHHHhcCCCEEEECcccHHHHHHHHHHHHH
Confidence 223344555665 579988876655444433444446899866677776676666666544
No 157
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=57.03 E-value=1.7e+02 Score=28.71 Aligned_cols=102 Identities=12% Similarity=0.111 Sum_probs=57.3
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC--CChHHHHHHHHHHHHH-cCCCCcEEEEeCCCCHHHHH--
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI--MRCDVIAEGIIAAAQE-LSLKIPIICRLQGTNVDDAK-- 397 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~--~~~~~~a~~i~~~~~~-~~~~kpiv~~~~g~~~~~~~-- 397 (443)
--|.+--|+.+.+.+.+-++.+.+. +++++++.-..|. ....+=-..+++...+ .+.+.||++..+.....+..
T Consensus 10 ~TPf~~dg~id~~~~~~~i~~l~~~-Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~ 88 (289)
T PF00701_consen 10 ITPFNADGSIDEDALKRLIDFLIEA-GVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIEL 88 (289)
T ss_dssp ---BETTSSB-HHHHHHHHHHHHHT-TSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHH
T ss_pred eCCCCCCcCcCHHHHHHHHHHHHHc-CCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHH
Confidence 3466667888888899999999865 7999998544432 1111112233333222 23468999877665555543
Q ss_pred -HHHHHCCC-------CcccCCCHHHHHHHHHHHHH
Q psy12143 398 -VLIASAAM-------KILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 398 -~~L~~~Gi-------P~~~f~s~e~Av~al~~l~~ 425 (443)
+..++.|+ |.+.-.|.++.++-+..+++
T Consensus 89 a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~ 124 (289)
T PF00701_consen 89 ARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIAD 124 (289)
T ss_dssp HHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHhhcCceEEEEeccccccchhhHHHHHHHHHHh
Confidence 45666673 55434566665555444443
No 158
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=56.25 E-value=2e+02 Score=28.08 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=49.5
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC--CChHHHHHHHHHH-HHHcCCCCcEEEEeCCCCHHHHH--
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI--MRCDVIAEGIIAA-AQELSLKIPIICRLQGTNVDDAK-- 397 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~--~~~~~~a~~i~~~-~~~~~~~kpiv~~~~g~~~~~~~-- 397 (443)
--|+|=-|+.+.+.+.+-++.+.+ .++++++++-..|. ....+--..+++. .+....+.||++..++.+..+.+
T Consensus 9 ~TPf~~dg~iD~~~~~~~i~~l~~-~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~ 87 (284)
T cd00950 9 VTPFKDDGSVDFDALERLIEFQIE-NGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIEL 87 (284)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHH-cCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHH
Confidence 456777788898889998998875 78999998644331 1112222333333 33323357888766655455544
Q ss_pred -HHHHHCCC
Q psy12143 398 -VLIASAAM 405 (443)
Q Consensus 398 -~~L~~~Gi 405 (443)
+..++.|+
T Consensus 88 a~~a~~~G~ 96 (284)
T cd00950 88 TKRAEKAGA 96 (284)
T ss_pred HHHHHHcCC
Confidence 35556674
No 159
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=56.02 E-value=83 Score=29.65 Aligned_cols=81 Identities=20% Similarity=0.227 Sum_probs=46.8
Q ss_pred CcEEEEEcchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHH
Q psy12143 296 GSIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIIT-ADPKVCAIMVNIFGGIMRCDVIA 368 (443)
Q Consensus 296 g~iaiitngGG~g~------la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll-~dp~vd~vlv~i~~~~~~~~~~a 368 (443)
++|++++...+... -.-+.+..+|.+.....-+.+..+.+...+.++.++ ++|++++|++. .+.++
T Consensus 117 ~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a 189 (268)
T cd06270 117 RKIACITGPLTKEDARLRLQGYRDALAEAGIALDESLIIEGDFTEEGGYAAMQELLARGAPFTAVFCA-------NDEMA 189 (268)
T ss_pred ceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCCcceEEECCCCHHHHHHHHHHHHhCCCCCCEEEEc-------CcHHH
Confidence 45777765433211 123556666644322233455555555455555555 56889998852 25678
Q ss_pred HHHHHHHHHcCCCCc
Q psy12143 369 EGIIAAAQELSLKIP 383 (443)
Q Consensus 369 ~~i~~~~~~~~~~kp 383 (443)
.++++++++.+.+.|
T Consensus 190 ~g~~~~l~~~g~~ip 204 (268)
T cd06270 190 AGAISALREHGISVP 204 (268)
T ss_pred HHHHHHHHHcCCCCC
Confidence 899999988665444
No 160
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=54.07 E-value=2.3e+02 Score=27.96 Aligned_cols=101 Identities=10% Similarity=0.049 Sum_probs=56.9
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCC-C-CChHHHHHHHHHH-HHHcCCCCcEEEEeCCCCHHHHH--
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGG-I-MRCDVIAEGIIAA-AQELSLKIPIICRLQGTNVDDAK-- 397 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~-~-~~~~~~a~~i~~~-~~~~~~~kpiv~~~~g~~~~~~~-- 397 (443)
--|+|=-|..+.+.+.+-++.+.+ .++++++++-..| . ....+--..+++. .+....+.||++..+. +..+..
T Consensus 9 vTPf~~dg~iD~~~l~~l~~~l~~-~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~-~t~~~i~~ 86 (289)
T cd00951 9 VTHFDADGSFDEDAYRAHVEWLLS-YGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GTATAIAY 86 (289)
T ss_pred ecCCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCC-CHHHHHHH
Confidence 457777788998999998988875 6899999854433 1 1122212223332 3332346899876544 344443
Q ss_pred -HHHHHCCC-------CcccCCCHHHHHHHHHHHHH
Q psy12143 398 -VLIASAAM-------KILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 398 -~~L~~~Gi-------P~~~f~s~e~Av~al~~l~~ 425 (443)
+..++.|+ |.|.-.+.++-.+-+..+++
T Consensus 87 a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~ 122 (289)
T cd00951 87 AQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCK 122 (289)
T ss_pred HHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHh
Confidence 45666673 44222344444444444443
No 161
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=53.68 E-value=98 Score=30.68 Aligned_cols=99 Identities=19% Similarity=0.308 Sum_probs=54.0
Q ss_pred cEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCC--CCHHH------------HHHHHHHHHcCCCccEEEEEccCCCC
Q psy12143 297 SIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGG--ATAAQ------------VKEAFKIITADPKVCAIMVNIFGGIM 362 (443)
Q Consensus 297 ~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~--~~~~~------------~~~al~~ll~dp~vd~vlv~i~~~~~ 362 (443)
|+|||..|+-.+-.-.-.+...+.. +.+.+- .+.+. ....++.++++|++|+|+|..+...
T Consensus 5 rvgiiG~G~~~~~~~~~~~~~~~~~----~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~- 79 (342)
T COG0673 5 RVGIIGAGGIAGKAHLPALAALGGG----LELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNAL- 79 (342)
T ss_pred EEEEEcccHHHHHHhHHHHHhCCCc----eEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChh-
Confidence 5889877755555555666554422 344333 33322 2334888899999999998554321
Q ss_pred ChHHHHHHHHHHHHHcCCCCcEEE-EeCCCCHHHHH---HHHHHCCCCc
Q psy12143 363 RCDVIAEGIIAAAQELSLKIPIIC-RLQGTNVDDAK---VLIASAAMKI 407 (443)
Q Consensus 363 ~~~~~a~~i~~~~~~~~~~kpiv~-~~~g~~~~~~~---~~L~~~GiP~ 407 (443)
. .+-+.++++ ..|+|++ .....+.+++. +.-+++|+.+
T Consensus 80 H----~e~~~~AL~---aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l 121 (342)
T COG0673 80 H----AELALAALE---AGKHVLCEKPLALTLEEAEELVELARKAGVKL 121 (342)
T ss_pred h----HHHHHHHHh---cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCce
Confidence 1 122233333 3677766 33333444443 4555667655
No 162
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=53.42 E-value=1.2e+02 Score=29.95 Aligned_cols=95 Identities=18% Similarity=0.255 Sum_probs=59.1
Q ss_pred cchhHHHHHHH--HHHHcC---CC------CCCeeeecC--CCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHH
Q psy12143 303 NGAGLAMATMD--IIKLHG---GE------PANFLDVGG--GATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAE 369 (443)
Q Consensus 303 ngGG~g~la~D--~~~~~G---~~------~~NPvDl~g--~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~ 369 (443)
.|||+|+.+ | .+..+| ++ +.|+.-+.+ ..+.+-+..-++.+++|-.++++=+ |.....++.+
T Consensus 14 ~sGGAGIqA-DLKTf~a~gvyg~saITaltaQNt~gV~~v~~v~~~~v~~Ql~av~~D~~v~avKt----GML~~~eiie 88 (263)
T COG0351 14 SSGGAGIQA-DLKTFQALGVYGMSAITALTAQNTLGVHGVHPVPPEFVEAQLDAVFSDIPVDAVKT----GMLGSAEIIE 88 (263)
T ss_pred CCccHHHHH-HHHHHHhcCCccceEEEEEEEeecCceeeEEeCCHHHHHHHHHHHhhcCCCCEEEE----CCcCCHHHHH
Confidence 577888864 6 344445 22 467776543 5556668888999999999998774 3222356778
Q ss_pred HHHHHHHHcCCCCcEEE-----EeCCC--CHHHHHHHHHHC
Q psy12143 370 GIIAAAQELSLKIPIIC-----RLQGT--NVDDAKVLIASA 403 (443)
Q Consensus 370 ~i~~~~~~~~~~kpiv~-----~~~g~--~~~~~~~~L~~~ 403 (443)
.+.+..++++. .|+|+ .-+|. -.+++.+.|++.
T Consensus 89 ~va~~l~~~~~-~~vV~DPVmvaksG~~Ll~~~a~~~l~~~ 128 (263)
T COG0351 89 VVAEKLKKYGI-GPVVLDPVMVAKSGDPLLDEEAVEALREE 128 (263)
T ss_pred HHHHHHHhcCC-CcEEECceEEEcCCCcccChHHHHHHHHH
Confidence 88888887532 54552 22343 245566655543
No 163
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=52.17 E-value=2.4e+02 Score=27.91 Aligned_cols=100 Identities=16% Similarity=0.148 Sum_probs=57.6
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCC-C--CChHHHHHHHHHH-HHHcCCCCcEEEEeCCCCHHHHH-
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGG-I--MRCDVIAEGIIAA-AQELSLKIPIICRLQGTNVDDAK- 397 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~-~--~~~~~~a~~i~~~-~~~~~~~kpiv~~~~g~~~~~~~- 397 (443)
--|.|=-|+.+.+.+.+-++.+.+ .++|+++++-..| . .+.++- +.+++. .+....+.||++..+. ...+++
T Consensus 14 vTPf~~dg~iD~~~l~~li~~l~~-~Gv~gi~v~GstGE~~~Lt~eEr-~~v~~~~~~~~~g~~pvi~gv~~-~t~~ai~ 90 (296)
T TIGR03249 14 VTPFDADGSFDEAAYRENIEWLLG-YGLEALFAAGGTGEFFSLTPAEY-EQVVEIAVSTAKGKVPVYTGVGG-NTSDAIE 90 (296)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHh-cCCCEEEECCCCcCcccCCHHHH-HHHHHHHHHHhCCCCcEEEecCc-cHHHHHH
Confidence 457777788999999999999885 7899999854433 2 112222 233332 2222346899876654 344544
Q ss_pred --HHHHHCCC-------CcccCCCHHHHHHHHHHHHH
Q psy12143 398 --VLIASAAM-------KILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 398 --~~L~~~Gi-------P~~~f~s~e~Av~al~~l~~ 425 (443)
+...+.|+ |.|.-.+.++..+-+..+++
T Consensus 91 ~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~ 127 (296)
T TIGR03249 91 IARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCE 127 (296)
T ss_pred HHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHh
Confidence 35555663 44322355554544444443
No 164
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=52.00 E-value=99 Score=26.53 Aligned_cols=60 Identities=23% Similarity=0.371 Sum_probs=44.0
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCC
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQG 390 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g 390 (443)
.|++=+....+.+...++++.+++++++..|++ +..+|+.|-+...+.+...|.++-..+
T Consensus 34 ~nf~~v~~~t~~eei~~~~~~~l~~~digIIlI--------te~~a~~i~~~I~~~~~~~PaIieIP~ 93 (115)
T TIGR01101 34 PNFLVVDKNTTVSEIEDCFNRFLKRDDIAIILI--------NQHIAEMIRHAVDAHTRSIPAVLEIPS 93 (115)
T ss_pred cceeeecCCCCHHHHHHHHHHHhhcCCeEEEEE--------cHHHHHHhHHHHHhcCCcCCEEEEECC
Confidence 577755666777789999999999999988887 355666666666665456788875554
No 165
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=51.28 E-value=1.4e+02 Score=28.95 Aligned_cols=120 Identities=11% Similarity=0.112 Sum_probs=61.9
Q ss_pred cEEEEEcchhHHHHHHHHHHHcC-CCCCCeeeecCC-------CCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHH
Q psy12143 297 SIGCLVNGAGLAMATMDIIKLHG-GEPANFLDVGGG-------ATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIA 368 (443)
Q Consensus 297 ~iaiitngGG~g~la~D~~~~~G-~~~~NPvDl~g~-------~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a 368 (443)
+|+|+...|.+|-..+..+.... .+..-=+|.... ... ....-++.+++ ++|.|+...+ .....
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i-~~~~dl~~ll~--~~DvVid~t~-----p~~~~ 74 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGV-AITDDLEAVLA--DADVLIDFTT-----PEATL 74 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCc-cccCCHHHhcc--CCCEEEECCC-----HHHHH
Confidence 57888776878888877776542 221111111110 000 01122344444 4676664221 22223
Q ss_pred HHHHHHHHHcCCCCcEEEEeCCCCHHHH--HHHHHHCCCCcccCCCHHHHHHHHHHHHHHHh
Q psy12143 369 EGIIAAAQELSLKIPIICRLQGTNVDDA--KVLIASAAMKILPCDNLDEAARLAVKLSSIVG 428 (443)
Q Consensus 369 ~~i~~~~~~~~~~kpiv~~~~g~~~~~~--~~~L~~~GiP~~~f~s~e~Av~al~~l~~~~~ 428 (443)
+ ++..+.+ .+||+++...|-..++. +... +.++|+....+..-.+..+.++++...
T Consensus 75 ~-~~~~al~--~G~~vvigttG~s~~~~~~l~~a-a~~~~v~~s~n~s~g~~~~~~l~~~aa 132 (257)
T PRK00048 75 E-NLEFALE--HGKPLVIGTTGFTEEQLAELEEA-AKKIPVVIAPNFSIGVNLLMKLAEKAA 132 (257)
T ss_pred H-HHHHHHH--cCCCEEEECCCCCHHHHHHHHHH-hcCCCEEEECcchHHHHHHHHHHHHHH
Confidence 3 3334444 47999876444443333 2332 377888667777777777777766554
No 166
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=50.82 E-value=38 Score=31.86 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=38.5
Q ss_pred CCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHHHhhchhhhhhcC
Q psy12143 48 GGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDYLITKQTG 127 (443)
Q Consensus 48 ~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~l~~~~~~~~~~~ 127 (443)
-.+|.-+-....+..|.. ..-.| |+|+|.-..++|-|| | .++|..+..+.+. ++...
T Consensus 29 e~FPLieQt~ypnh~em~---s~~~f-PvVvKvG~~h~G~GK----------v-kv~n~~~~qDi~s-ll~~~------- 85 (203)
T PF02750_consen 29 EKFPLIEQTYYPNHREML---SAPRF-PVVVKVGHAHAGMGK----------V-KVDNQQDFQDIAS-LLAIT------- 85 (203)
T ss_dssp TTS-B---EEESSGGGGC---S-SSS-SEEEEESS-STTTTE----------E-EE-SHHHHHHHHH-HHHHH-------
T ss_pred cccccceeeecCChhhhc---cCCCC-CEEEEEccccCceeE----------E-EEccHHHHHHHHH-HHHhc-------
Confidence 345665555555554432 22356 999999533444333 3 5667777766544 32221
Q ss_pred CCCcccCeEEEEeeeCCCeeeEEEEEE
Q psy12143 128 EKGRICNAVMVTERKYPRKEYYFAFMM 154 (443)
Q Consensus 128 ~~g~~~~~vlVE~~v~~g~El~vgv~~ 154 (443)
-.-+.+|+|+.....+.+.-..
T Consensus 86 -----~~Y~T~EPfId~kyDirvqkIG 107 (203)
T PF02750_consen 86 -----KDYATTEPFIDAKYDIRVQKIG 107 (203)
T ss_dssp -----TS-EEEEE---EEEEEEEEEET
T ss_pred -----CceEEeeccccceeEEEEEEEc
Confidence 1357899999766676665443
No 167
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=50.53 E-value=13 Score=37.34 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=41.7
Q ss_pred HCCCCCCCeeecC-CHHHHHHHH--HHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHHHhhchhhh
Q psy12143 47 EGGIPVPPFGVAK-TKKEAGEIA--KKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDYLIT 123 (443)
Q Consensus 47 ~~GIpv~~~~~v~-s~~ea~~~a--~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~l~~~~~~~ 123 (443)
...|.+|++..+. +.++..+.. +.+.| |++.||...+| ..++ --..++-+++.+.+ + .
T Consensus 110 ~~~i~~P~~v~i~~~~~~~~~~l~~agL~f-PlI~KPlvA~G-sa~S-------H~Maivf~~~gL~~----L-~----- 170 (307)
T PF05770_consen 110 DGRIRVPKFVVINSDAESLPELLKEAGLKF-PLICKPLVACG-SADS-------HKMAIVFNEEGLKD----L-K----- 170 (307)
T ss_dssp CTTEE-S-EEEESSSHCCHHHHHHCTTS-S-SEEEEESB-SS-TSCC-------CEEEEE-SGGGGTT------------
T ss_pred CCcccCCceEEEcCCHHHHHHHHHHCCCcc-cEEeeehhhcC-Cccc-------eEEEEEECHHHHhh----c-C-----
Confidence 3477889998887 433333333 35677 99999986654 3343 24677777776542 1 0
Q ss_pred hhcCCCCcccCeEEEEeeeCCC-eeeEEEEEEec
Q psy12143 124 KQTGEKGRICNAVMVTERKYPR-KEYYFAFMMER 156 (443)
Q Consensus 124 ~~~~~~g~~~~~vlVE~~v~~g-~El~vgv~~D~ 156 (443)
..+++|+|+.++ .=+-|-+..|.
T Consensus 171 ----------~P~VlQeFVNHggvLfKVyVvGd~ 194 (307)
T PF05770_consen 171 ----------PPCVLQEFVNHGGVLFKVYVVGDK 194 (307)
T ss_dssp ----------SSEEEEE----TTEEEEEEEETTE
T ss_pred ----------CCEEEEEeecCCCEEEEEEEecCE
Confidence 247999999854 33334444333
No 168
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=49.99 E-value=1.7e+02 Score=25.41 Aligned_cols=103 Identities=10% Similarity=-0.039 Sum_probs=58.9
Q ss_pred HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeC
Q psy12143 310 ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQ 389 (443)
Q Consensus 310 la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~ 389 (443)
+.+..+...|.+ -+|++...+++.+.++.. ..+.|.|.++... +........+++.+++.+.+. +.+..+
T Consensus 21 iv~~~l~~~Gfe---Vi~lg~~~s~e~~v~aa~----e~~adii~iSsl~--~~~~~~~~~~~~~L~~~g~~~-i~vivG 90 (132)
T TIGR00640 21 VIATAYADLGFD---VDVGPLFQTPEEIARQAV----EADVHVVGVSSLA--GGHLTLVPALRKELDKLGRPD-ILVVVG 90 (132)
T ss_pred HHHHHHHhCCcE---EEECCCCCCHHHHHHHHH----HcCCCEEEEcCch--hhhHHHHHHHHHHHHhcCCCC-CEEEEe
Confidence 355677777754 368888888886654442 2356777764332 223445677777777744322 223335
Q ss_pred CCCHHHHHHHHHHCCCCccc--CCCHHHHHHHHHH
Q psy12143 390 GTNVDDAKVLIASAAMKILP--CDNLDEAARLAVK 422 (443)
Q Consensus 390 g~~~~~~~~~L~~~GiP~~~--f~s~e~Av~al~~ 422 (443)
|....+-.+.|.+.|+--+. =.++++-+..+..
T Consensus 91 G~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~ 125 (132)
T TIGR00640 91 GVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLK 125 (132)
T ss_pred CCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 54344456779999974311 2356666665544
No 169
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=49.82 E-value=68 Score=29.51 Aligned_cols=49 Identities=14% Similarity=0.275 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHcCCCccEEEE--EccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeC
Q psy12143 335 AQVKEAFKIITADPKVCAIMV--NIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQ 389 (443)
Q Consensus 335 ~~~~~al~~ll~dp~vd~vlv--~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~ 389 (443)
+.+.+.++.+.+|+ ++.|++ +.+||.. .-+..|.+.... .+||+++...
T Consensus 16 ~~l~~~l~~a~~~~-~~~vvl~InSpGG~v---~~~~~i~~~l~~--~~kPvia~v~ 66 (187)
T cd07020 16 DYLERAIDQAEEGG-ADALIIELDTPGGLL---DSTREIVQAILA--SPVPVVVYVY 66 (187)
T ss_pred HHHHHHHHHHHhCC-CCEEEEEEECCCCCH---HHHHHHHHHHHh--CCCCEEEEEe
Confidence 45788888887665 788776 6676631 122344444444 5799998664
No 170
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=49.75 E-value=73 Score=29.30 Aligned_cols=59 Identities=20% Similarity=0.243 Sum_probs=37.1
Q ss_pred eecCCCCHH---HHHHHHHHHHcCCCccEEEE--EccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCC
Q psy12143 327 DVGGGATAA---QVKEAFKIITADPKVCAIMV--NIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGT 391 (443)
Q Consensus 327 Dl~g~~~~~---~~~~al~~ll~dp~vd~vlv--~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~ 391 (443)
.+.|..++. .+.++++...+++ ++.|++ +.+||.. .-++.|.+.... .++|++++..|.
T Consensus 5 ~i~g~I~~~~~~~l~~~l~~a~~~~-~~~ivl~inspGG~v---~~~~~I~~~l~~--~~~pvva~V~g~ 68 (178)
T cd07021 5 PIEGEIDPGLAAFVERALKEAKEEG-ADAVVLDIDTPGGRV---DSALEIVDLILN--SPIPTIAYVNDR 68 (178)
T ss_pred EEeeEECHHHHHHHHHHHHHHHhCC-CCeEEEEEECcCCCH---HHHHHHHHHHHh--CCCCEEEEECCc
Confidence 344444433 3577888888877 788776 5666632 223455555555 579999887765
No 171
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=47.24 E-value=1.2e+02 Score=26.20 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=28.5
Q ss_pred EEEEEccCCC-CChHHHHHHHHHHHHHcCCCCcEEEEeC--------------CCCHHHHHHHHHHCC
Q psy12143 352 AIMVNIFGGI-MRCDVIAEGIIAAAQELSLKIPIICRLQ--------------GTNVDDAKVLIASAA 404 (443)
Q Consensus 352 ~vlv~i~~~~-~~~~~~a~~i~~~~~~~~~~kpiv~~~~--------------g~~~~~~~~~L~~~G 404 (443)
+|++..+|+. .......+.+.+..++.-++.+|-..+. -+...++++.|.+.|
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts~~i~~~l~~~~~~~p~~~eaL~~l~~~G 69 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTSRMIRKKLKKRGIEVDTPEEALAKLAADG 69 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecHHHHHHHHHhcCCCCCCHHHHHHHHHHCC
Confidence 5666566652 2223344556666655334556654433 234566667777766
No 172
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=46.22 E-value=86 Score=30.34 Aligned_cols=100 Identities=17% Similarity=0.124 Sum_probs=57.4
Q ss_pred CcEEEEEcc-hhHHHHHHHHHHHcCCCCCCee--ee-----cCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHH
Q psy12143 296 GSIGCLVNG-AGLAMATMDIIKLHGGEPANFL--DV-----GGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVI 367 (443)
Q Consensus 296 g~iaiitng-GG~g~la~D~~~~~G~~~~NPv--Dl-----~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~ 367 (443)
+||+++|.= --..-...+.+++.|..+.+.. ++ -+..+++...++++.+ .+|++|+||+..+. ..+
T Consensus 121 ~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~-~~~~aDAifisCTn--Lrt--- 194 (239)
T TIGR02990 121 RRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAA-FDPDADALFLSCTA--LRA--- 194 (239)
T ss_pred CEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHh-cCCCCCEEEEeCCC--chh---
Confidence 567777641 1223334456666774432221 11 3456667777777666 57899999985322 112
Q ss_pred HHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCc
Q psy12143 368 AEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKI 407 (443)
Q Consensus 368 a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~ 407 (443)
++.|-++-++ .+|||+. .|..-.+..|+..|++.
T Consensus 195 ~~vi~~lE~~--lGkPVls----SNqat~W~~Lr~~G~~~ 228 (239)
T TIGR02990 195 ATCAQRIEQA--IGKPVVT----SNQATAWRCLRLCGDPD 228 (239)
T ss_pred HHHHHHHHHH--HCCCEEE----HHHHHHHHHHHHcCCCC
Confidence 2333333334 5799974 24455688999999764
No 173
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=45.89 E-value=58 Score=33.16 Aligned_cols=118 Identities=18% Similarity=0.167 Sum_probs=65.8
Q ss_pred HHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHHHhhch
Q psy12143 41 SYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDY 120 (443)
Q Consensus 41 ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~l~~~~ 120 (443)
-|+++++||-|+|+..+- |+-+-.+.++++|| + =+|... -..+..++-++|+.+-.+.
T Consensus 136 ek~~~~ky~~pt~ealve-SAl~~a~~~e~l~f-~-~i~iS~-------------------K~Sdv~~~v~aYr~lA~~~ 193 (361)
T COG0821 136 EKRLLEKYGGPTPEALVE-SALEHAELLEELGF-D-DIKVSV-------------------KASDVQLMVAAYRLLAKRC 193 (361)
T ss_pred hHHHHHHhcCCCHHHHHH-HHHHHHHHHHHCCC-C-cEEEEE-------------------EcCCHHHHHHHHHHHHHhc
Confidence 578999999998876554 44444567899998 5 233321 1234677777877663321
Q ss_pred hhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc-CCCcEEeecCCCCcchhcccccCCCeEEEEecCCCCCCCHHH
Q psy12143 121 LITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS-FAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQ 199 (443)
Q Consensus 121 ~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~-~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~~~l~~~~ 199 (443)
..-|-+|++.-.. +.|-+=..-+.|-...|-+.| . +|+.+.|..----..
T Consensus 194 ------------------------dyPLHLGvTEAG~~~~G~VkSa~alg~LL~eGIGD----T-IRVSLt~~P~~EV~V 244 (361)
T COG0821 194 ------------------------DYPLHLGVTEAGMGFKGIVKSAAALGALLSEGIGD----T-IRVSLTADPVEEVKV 244 (361)
T ss_pred ------------------------CCCcccceecccCcccceehHHHHHHHHHHhcCCc----e-EEEecCCCchhhhHH
Confidence 1234466665432 223332211245555565664 4 345666532111135
Q ss_pred HHHHHHHcCC
Q psy12143 200 ALKVADAVGL 209 (443)
Q Consensus 200 a~~~l~~lg~ 209 (443)
++++++.+|+
T Consensus 245 ~~eILqslgl 254 (361)
T COG0821 245 AQEILQSLGL 254 (361)
T ss_pred HHHHHHHhCc
Confidence 7889998874
No 174
>KOG1254|consensus
Probab=45.84 E-value=40 Score=35.97 Aligned_cols=93 Identities=20% Similarity=0.221 Sum_probs=56.2
Q ss_pred CCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHH
Q psy12143 295 DGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAA-QVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIA 373 (443)
Q Consensus 295 ~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~~-~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~ 373 (443)
.|.++.+++|||+..-.-+....-=--+.-=+-++|+..+- ++..-+-.-.+||.+|.|++...-+. +++- .+.+
T Consensus 159 ~Gsv~~vS~sGGmsnE~nn~isrtt~g~~egiaiggd~~pgSTl~dhi~r~q~~~~vk~Iv~Lgevgg-~~ey---~~~e 234 (600)
T KOG1254|consen 159 PGSVIYVSRSGGMSNELNNIISRTTDGPYEGIAIGGDRYPGSTLIDHIPREQHDPLVKFIVVLGEVGG-DEEY---TFLE 234 (600)
T ss_pred CccEEEEecCCCcchhhhhhhhheeccceeeeeccCCCccCchHhhhhhhhhccChhheEEeehhhcc-ccee---ehhh
Confidence 57899999999998877776654322223333455555543 34444444457899999887332222 1111 2344
Q ss_pred HHHHcCCCCcEEEEeCCC
Q psy12143 374 AAQELSLKIPIICRLQGT 391 (443)
Q Consensus 374 ~~~~~~~~kpiv~~~~g~ 391 (443)
+.++-...||+|+++.|+
T Consensus 235 ~~k~g~~tkPlVaw~~gt 252 (600)
T KOG1254|consen 235 ANKEGKITKPLVAWCIGT 252 (600)
T ss_pred hhhcCCccCCEEEEecCc
Confidence 455544579999988776
No 175
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=45.58 E-value=1.4e+02 Score=24.69 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCC
Q psy12143 334 AAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGT 391 (443)
Q Consensus 334 ~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~ 391 (443)
.+...++++.+++++++..|+++-.. ...+.+.+.+...+ ..+|+++...+.
T Consensus 29 ~ee~~~~l~~l~~~~d~gII~Ite~~----~~~i~e~i~~~~~~--~~~P~ii~IP~~ 80 (100)
T PRK02228 29 DEKLDEAVEEVLEDDDVGILVMHDDD----LEKLPRRLRRTLEE--SVEPTVVTLGGG 80 (100)
T ss_pred HHHHHHHHHHHhhCCCEEEEEEehhH----hHhhHHHHHHHHhc--CCCCEEEEECCC
Confidence 35689999999899999988873211 12344555444444 579998876654
No 176
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=45.50 E-value=39 Score=28.81 Aligned_cols=64 Identities=16% Similarity=0.247 Sum_probs=41.1
Q ss_pred CcEEEEEcchhHH-HHHH----HHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCC
Q psy12143 296 GSIGCLVNGAGLA-MATM----DIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGG 360 (443)
Q Consensus 296 g~iaiitngGG~g-~la~----D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~ 360 (443)
..+++|-.|--.+ ..+. -.|+..|.. .--+.+..+.+.+.+.+.++.+-+||+|++|+|..|..
T Consensus 30 P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~-~~~~~l~~~~~~~el~~~i~~lN~D~~V~GIlvq~PLP 98 (117)
T PF00763_consen 30 PKLAIILVGDDPASISYVRSKQKAAEKLGIE-FELIELPEDISEEELLELIEKLNEDPSVHGILVQLPLP 98 (117)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHT-E-EEEEEE-TTSSHHHHHHHHHHHHH-TT-SEEEEESSSS
T ss_pred cEEEEEecCCChhHHHHHHHHHHHHHHcCCc-eEEEECCCCcCHHHHHHHHHHHhCCCCCCEEEEcCCCC
Confidence 4577666664443 4444 467777754 33345677888888999999999999999999966553
No 177
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=44.95 E-value=2e+02 Score=29.15 Aligned_cols=111 Identities=14% Similarity=0.063 Sum_probs=58.4
Q ss_pred cCCcEEEEEcchhHH-----HHHHHHHHHcCCCCCC-----ee-eecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC
Q psy12143 294 LDGSIGCLVNGAGLA-----MATMDIIKLHGGEPAN-----FL-DVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIM 362 (443)
Q Consensus 294 ~~g~iaiitngGG~g-----~la~D~~~~~G~~~~N-----Pv-Dl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~ 362 (443)
.+..|+||+.|++.- -.+...++..|.++.+ =- ........++... |.-+..||++++|+..+.| -
T Consensus 9 ~gd~I~iIaPSs~~~~~~~~~~a~~~L~~~G~~v~~~~~i~~~~~~~a~s~~~R~~d-L~~af~d~~vk~Il~~rGG--y 85 (313)
T COG1619 9 EGDEIGIIAPSSGATATDALKRAIQRLENLGFEVVFGEHILRRDQYFAGSDEERAED-LMSAFSDPDVKAILCVRGG--Y 85 (313)
T ss_pred CCCEEEEEecCcccchHHHHHHHHHHHHHcCCEEEechhhhhccccccCCHHHHHHH-HHHHhcCCCCeEEEEcccC--C
Confidence 366699999999988 2233456667743210 01 1222222333433 5555679999999974433 2
Q ss_pred ChHHHHHHHH-HHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcccCCCH
Q psy12143 363 RCDVIAEGII-AAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNL 413 (443)
Q Consensus 363 ~~~~~a~~i~-~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~~f~s~ 413 (443)
.+..+...+- +..++ .+|+++-++--+ .--..++.+.|++. |..|
T Consensus 86 gs~rlLp~ld~~~i~~--~pKifiGySDiT--all~ai~~k~gl~T--fhGp 131 (313)
T COG1619 86 GSNRLLPYLDYDLIRN--HPKIFIGYSDIT--ALLLAILAKTGLIT--FHGP 131 (313)
T ss_pred ChhhhhhhcchHHHhc--CCceEEEecHHH--HHHHHHHHhcCCce--Eecc
Confidence 2333333332 22233 456655322221 11245788888887 5554
No 178
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=44.47 E-value=3.2e+02 Score=29.41 Aligned_cols=123 Identities=10% Similarity=-0.000 Sum_probs=64.9
Q ss_pred EEEEEcchhH-HHHHHHHHHHcC--------CCCCCeeeecCCCC---HHHHHHHHHHHHcCCCccEEEEEccCCCCChH
Q psy12143 298 IGCLVNGAGL-AMATMDIIKLHG--------GEPANFLDVGGGAT---AAQVKEAFKIITADPKVCAIMVNIFGGIMRCD 365 (443)
Q Consensus 298 iaiitngGG~-g~la~D~~~~~G--------~~~~NPvDl~g~~~---~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~ 365 (443)
++.+|.|=-+ |=-+.+.+..+- .+...|+++.-... ++.....++..-.|+++|+|++..+.- .+
T Consensus 3 ~~~~~g~q~lyg~~~l~~~~~~~~~i~~~l~~~~~~~~~v~~~~~v~~~~~i~~~~~~~~~~~~~dgvi~~m~TF-s~-- 79 (484)
T cd03557 3 VWFVTGSQHLYGEEALKQVAAHSREIVDGLNASGKLPVKIVFKPVLTTPDEILAVCREANADDNCAGVITWMHTF-SP-- 79 (484)
T ss_pred EEEEeCCcccCChHHHHHHHHHHHHHHHHhcccCCCCeEEEEccccCCHHHHHHHHHHccccCCccEEEEccCCC-ch--
Confidence 5566666544 333334333332 34445677754333 344555565555579999999843321 11
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEe-CC-------C-------------CHHHHHHHHHHCCCCc---ccCCCHHHHHHHHH
Q psy12143 366 VIAEGIIAAAQELSLKIPIICRL-QG-------T-------------NVDDAKVLIASAAMKI---LPCDNLDEAARLAV 421 (443)
Q Consensus 366 ~~a~~i~~~~~~~~~~kpiv~~~-~g-------~-------------~~~~~~~~L~~~GiP~---~~f~s~e~Av~al~ 421 (443)
+..+++.++. .+|||+.+- .. . ...+.-..|.+.|+|. +.+.+-++..+.+.
T Consensus 80 --a~~~i~~~~~--l~~PvL~~~~q~~~~l~~~sidmd~m~l~qaahG~~e~~~il~R~gi~~~~v~G~~~d~~~~~~i~ 155 (484)
T cd03557 80 --AKMWIAGLTA--LQKPLLHLHTQFNREIPWDTIDMDFMNLNQSAHGDREFGFIGSRMRIPRKVVVGHWQDPEVHEKIG 155 (484)
T ss_pred --HHHHHHHHHH--cCCCEEEEccCCCccCCCCCccchHHhhhhhcCCcHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHH
Confidence 2344555666 579998642 22 0 1122223788889994 22333345556666
Q ss_pred HHHHHH
Q psy12143 422 KLSSIV 427 (443)
Q Consensus 422 ~l~~~~ 427 (443)
.|.+..
T Consensus 156 ~w~raa 161 (484)
T cd03557 156 DWMRAA 161 (484)
T ss_pred HHHHHH
Confidence 665554
No 179
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=43.93 E-value=3.2e+02 Score=26.64 Aligned_cols=106 Identities=16% Similarity=0.228 Sum_probs=69.2
Q ss_pred cCCCHHHHHHHHHHCC-CC--CCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccC-cEEE-------
Q psy12143 34 LNVHEHVSYTLLKEGG-IP--VPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKG-GVKM------- 102 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~G-Ip--v~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~G-GV~l------- 102 (443)
..+++++..+.|.+.. +. .|++...++.+++.+.....+ -|.+||..-.+|+| +.+-+-.+ +..+
T Consensus 15 ~~~~Kw~v~~~L~~~~~l~~~LP~T~~~~~~~~l~~~L~~y~--~vylKP~~Gs~G~g--I~ri~~~~~~~~~~~~~~~~ 90 (262)
T PF14398_consen 15 GFFDKWEVYKALSRDPELRPYLPETELLTSFEDLREMLNKYK--SVYLKPDNGSKGKG--IIRIEKKGGGYRIQYRNKKK 90 (262)
T ss_pred CCCCHHHHHHHHHcCCcchhhCCCceEcCCHHHHHHHHHHCC--EEEEEeCCCCCCcc--EEEEEEeCCEEEEEEccCCc
Confidence 4588899999999875 33 688999999999999998876 59999974444443 33221111 2222
Q ss_pred -----eCCHHHHHHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCC------CeeeEEEEEEecc
Q psy12143 103 -----VDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYP------RKEYYFAFMMERS 157 (443)
Q Consensus 103 -----~~s~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~------g~El~vgv~~D~~ 157 (443)
..+.+++.....+.+. ...++||+.++- ...+.|-+.+|..
T Consensus 91 ~~~~~~~~~~~l~~~l~~~~~--------------~~~yIiQq~I~l~~~~gr~fD~RvlvqK~~~ 142 (262)
T PF14398_consen 91 NVRRTFSSLEELEQFLKELLG--------------KRRYIIQQGIPLATYDGRPFDFRVLVQKNGS 142 (262)
T ss_pred eeEEEeCCHHHHHHHHHHhcC--------------CCcEEEeCCccccccCCCeEEEEEEEEECCC
Confidence 1234555555544322 146999999842 3478888888775
No 180
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=43.13 E-value=1.2e+02 Score=29.16 Aligned_cols=77 Identities=19% Similarity=0.274 Sum_probs=50.4
Q ss_pred cchhHHHHHHH--HHHHcCCC---------CCCeeeecC--CCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHH
Q psy12143 303 NGAGLAMATMD--IIKLHGGE---------PANFLDVGG--GATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAE 369 (443)
Q Consensus 303 ngGG~g~la~D--~~~~~G~~---------~~NPvDl~g--~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~ 369 (443)
.|||.|+. +| .+..+|+. ..|+-.+.. ..+.+-+.+-++.+++|-.+++|-+-. .. ..+..+
T Consensus 9 ~sggaGi~-aD~~t~~~~g~~~~~v~T~~t~q~~~~v~~~~~~~~~~~~~q~~~~~~d~~~~aikiG~---l~-~~~~~~ 83 (254)
T TIGR00097 9 SGGGAGIQ-ADLKTFSALGVFGTSVITALTAQNTRGVTGVYPIPPDFVEAQLDAVFSDIPVDAAKTGM---LA-SAEIVE 83 (254)
T ss_pred CCcHHHHH-HHHHHHHHcCCeecceeEEEEeEcCcceEEEEECCHHHHHHHHHHHHhCCCCCEEEECC---cC-CHHHHH
Confidence 57788875 47 56677732 356655532 344566888899999999999988622 12 246677
Q ss_pred HHHHHHHHcCCCC-cEEE
Q psy12143 370 GIIAAAQELSLKI-PIIC 386 (443)
Q Consensus 370 ~i~~~~~~~~~~k-piv~ 386 (443)
.+.+.+++. ++ |+++
T Consensus 84 ~i~~~~~~~--~~~~vVl 99 (254)
T TIGR00097 84 AVARKLREY--PVRPLVV 99 (254)
T ss_pred HHHHHHHhc--CCCcEEE
Confidence 777777763 45 6764
No 181
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.75 E-value=64 Score=32.17 Aligned_cols=63 Identities=14% Similarity=0.232 Sum_probs=44.7
Q ss_pred CCcEEEEEcchhHH-HH----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 295 DGSIGCLVNGAGLA-MA----TMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 295 ~g~iaiitngGG~g-~l----a~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
...+++|-.|.=.+ .. -.-+|++.|.. ..-+++..+.+.+.+.+.++.+-+||+||+|++..|
T Consensus 31 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 98 (285)
T PRK14191 31 RPKLAVILVGKDPASQTYVNMKIKACERVGMD-SDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLP 98 (285)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 34577776663222 22 22356666744 456778888888889999999999999999999654
No 182
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=41.75 E-value=2.4e+02 Score=24.62 Aligned_cols=100 Identities=15% Similarity=0.141 Sum_probs=58.5
Q ss_pred HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCC-CCcEEEEeC
Q psy12143 311 TMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSL-KIPIICRLQ 389 (443)
Q Consensus 311 a~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~-~kpiv~~~~ 389 (443)
.+.+++.+|.+ -+|++-+.+++.+.++.. ..+.|.|.++...+. .....+.+++.+++.+. +.||++.-.
T Consensus 19 v~~~L~~~Gfe---VidLG~~v~~e~~v~aa~----~~~adiVglS~L~t~--~~~~~~~~~~~l~~~gl~~v~vivGG~ 89 (128)
T cd02072 19 LDHAFTEAGFN---VVNLGVLSPQEEFIDAAI----ETDADAILVSSLYGH--GEIDCKGLREKCDEAGLKDILLYVGGN 89 (128)
T ss_pred HHHHHHHCCCE---EEECCCCCCHHHHHHHHH----HcCCCEEEEeccccC--CHHHHHHHHHHHHHCCCCCCeEEEECC
Confidence 34477877854 478999999887655542 235677777544332 22334555666666543 444444211
Q ss_pred ---CC-CHHHHHHHHHHCCCCcccCC---CHHHHHHHH
Q psy12143 390 ---GT-NVDDAKVLIASAAMKILPCD---NLDEAARLA 420 (443)
Q Consensus 390 ---g~-~~~~~~~~L~~~GiP~~~f~---s~e~Av~al 420 (443)
+. ..++..+.|++.|+-- +|. ++++.+..|
T Consensus 90 ~~i~~~d~~~~~~~L~~~Gv~~-vf~pgt~~~~i~~~l 126 (128)
T cd02072 90 LVVGKQDFEDVEKRFKEMGFDR-VFAPGTPPEEAIADL 126 (128)
T ss_pred CCCChhhhHHHHHHHHHcCCCE-EECcCCCHHHHHHHH
Confidence 11 2234567899999852 376 677776654
No 183
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=41.44 E-value=3.5e+02 Score=26.52 Aligned_cols=82 Identities=12% Similarity=0.107 Sum_probs=49.7
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC--CChHHHHHHHHHHHH-HcCCCCcEEEEeCCCCHHHHH--
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI--MRCDVIAEGIIAAAQ-ELSLKIPIICRLQGTNVDDAK-- 397 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~--~~~~~~a~~i~~~~~-~~~~~kpiv~~~~g~~~~~~~-- 397 (443)
--|.|=-|+.+.+.+.+-++.+.+.-++++++++-..|. ...++--..+++... ....+.||++..+..+..++.
T Consensus 9 ~TPf~~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~ 88 (288)
T cd00954 9 LTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQEL 88 (288)
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHH
Confidence 457777788998999999999987328999998654442 112222223333322 222357888866655444443
Q ss_pred -HHHHHCC
Q psy12143 398 -VLIASAA 404 (443)
Q Consensus 398 -~~L~~~G 404 (443)
+..++.|
T Consensus 89 a~~a~~~G 96 (288)
T cd00954 89 AKHAEELG 96 (288)
T ss_pred HHHHHHcC
Confidence 4566677
No 184
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.38 E-value=3e+02 Score=25.62 Aligned_cols=122 Identities=16% Similarity=0.116 Sum_probs=59.9
Q ss_pred CcEEEEEcchhHH------HHHHHHHHHcCCCCCCeeeecCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHH
Q psy12143 296 GSIGCLVNGAGLA------MATMDIIKLHGGEPANFLDVGGGATAAQ-VKEAFKIITADPKVCAIMVNIFGGIMRCDVIA 368 (443)
Q Consensus 296 g~iaiitngGG~g------~la~D~~~~~G~~~~NPvDl~g~~~~~~-~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a 368 (443)
++|+++++.-+.. --..+.+..+|.......-..+..+.+. +....+.+.+.|++|+|++. .+.+|
T Consensus 117 ~~i~~l~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a 189 (269)
T cd06288 117 RRIAFINGEPWMLAAKDRLKGYRQALAEAGIPFDPDLVVHGDWSADDGYEAAAALLDLDDRPTAIFCG-------NDRMA 189 (269)
T ss_pred ceEEEEeCCccchhHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChHHHHHHHHHHHhCCCCCCEEEEe-------CcHHH
Confidence 4688886554321 1123455555543221122234444444 44444444456789999852 35677
Q ss_pred HHHHHHHHHcCCCCc--EE-EEeCCCCHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHHHHH
Q psy12143 369 EGIIAAAQELSLKIP--II-CRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSSIV 427 (443)
Q Consensus 369 ~~i~~~~~~~~~~kp--iv-~~~~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~~~ 427 (443)
.++.+++++.+..+| +. +.+.+. +...+.+. .++.++..+.-+-+..++..|.+.+
T Consensus 190 ~~~~~~l~~~g~~vp~di~v~g~d~~--~~~~~~~~-~~~~ti~~~~~~~g~~a~~~l~~~~ 248 (269)
T cd06288 190 MGAYQALLERGLRIPQDVSVVGFDNQ--EIIAEHLR-PPLTTVALPHYEMGRWAVELLLDGI 248 (269)
T ss_pred HHHHHHHHHcCCCCcccceEEeeCCc--hhhhhccC-CCceeEecCHHHHHHHHHHHHHHHh
Confidence 888888888654433 32 333333 22222332 4565522222233444444555554
No 185
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=41.36 E-value=2.1e+02 Score=28.14 Aligned_cols=90 Identities=18% Similarity=0.210 Sum_probs=52.9
Q ss_pred cCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEE-eCCCCHHHHHHHHHHCCCC
Q psy12143 329 GGGATAAQ-VKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICR-LQGTNVDDAKVLIASAAMK 406 (443)
Q Consensus 329 ~g~~~~~~-~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~-~~g~~~~~~~~~L~~~GiP 406 (443)
.++.+.+. +..+-++|.++|++++|+.. .+.++-+.++++++.+....|.+. +.+ .++.++.+++..+-
T Consensus 198 ~~~~~~~~a~~~~~~~L~~~pdi~~i~~~-------~d~~a~ga~~A~~~~g~~~~v~v~g~D~--~~~~~~~i~~G~~~ 268 (322)
T COG1879 198 TGDWDRDKALEVMEDLLAANPDIDGIYAA-------NDGMALGAIQALKAAGRKGDVVVVGFDG--TPDALKALKDGKLD 268 (322)
T ss_pred CCcccHHHHHHHHHHHHHhCCCceEEEEC-------CchhHHHHHHHHHHcCCCCceEEEEecC--CHHHHHHHHcCCce
Confidence 44555554 67777888899999998841 245566666666654332223332 333 35777777765454
Q ss_pred cccCCCHHHHHHHHHHHHHHH
Q psy12143 407 ILPCDNLDEAARLAVKLSSIV 427 (443)
Q Consensus 407 ~~~f~s~e~Av~al~~l~~~~ 427 (443)
..++..|.........+....
T Consensus 269 ~~v~q~p~~~g~~~~~~~~~~ 289 (322)
T COG1879 269 ATVLQDPAAQGAAAVELALKL 289 (322)
T ss_pred EEEecCHHHHHHHHHHHHHHH
Confidence 445677766664444444443
No 186
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=41.22 E-value=1.6e+02 Score=29.52 Aligned_cols=61 Identities=20% Similarity=0.144 Sum_probs=36.1
Q ss_pred cEEEEEcchhHH-------HHHHHHHHHcCCCCC--Ceeee---cCCCCHHHHHHHHHHHHcCCCccEEEEEc
Q psy12143 297 SIGCLVNGAGLA-------MATMDIIKLHGGEPA--NFLDV---GGGATAAQVKEAFKIITADPKVCAIMVNI 357 (443)
Q Consensus 297 ~iaiitngGG~g-------~la~D~~~~~G~~~~--NPvDl---~g~~~~~~~~~al~~ll~dp~vd~vlv~i 357 (443)
+|+|++.|++.. -.+...++..|.++. .-+.- .-..+.+.=.+-|...+.||++|+|+...
T Consensus 2 ~I~ivAPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~Dp~i~aI~~~r 74 (308)
T cd07062 2 TIAVVSPSSGIPGELPHRLERAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFADPSIKAIIPTI 74 (308)
T ss_pred eEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEEecccccccccccCCHHHHHHHHHHHhcCCCCCEEEECC
Confidence 689999999843 234467788885421 11111 11233333344466667899999999743
No 187
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=40.72 E-value=2.5e+02 Score=27.30 Aligned_cols=89 Identities=19% Similarity=0.169 Sum_probs=46.8
Q ss_pred CCCCHHHHHHHHHHH-HcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCc--EEE-EeCCCCHHHHHHHHHHCCC
Q psy12143 330 GGATAAQVKEAFKII-TADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIP--IIC-RLQGTNVDDAKVLIASAAM 405 (443)
Q Consensus 330 g~~~~~~~~~al~~l-l~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kp--iv~-~~~g~~~~~~~~~L~~~Gi 405 (443)
+..+.+...++++.+ ..+|++|+|++. .+.+|.++.+++++.+...| +.+ .+.+ .+.....+....+
T Consensus 182 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~A~g~~~al~~~g~~vp~di~vig~D~--~~~~~~~~~~~~l 252 (305)
T cd06324 182 AGWSEDEAYEQAENLLKRYPDVRLIWAA-------NDQMAFGALRAAKEAGRKPGRDVLFGGVNW--SPEALRAIKDGRL 252 (305)
T ss_pred CCCCHHHHHHHHHHHHHHCCCccEEEEC-------CchHHHHHHHHHHHcCCCcCCCEEEEecCC--CHHHHHHHHcCce
Confidence 344444434444444 456889998851 25778888899888654433 433 2333 3344445554444
Q ss_pred CcccCCCHHHHHHHHHHHHHHH
Q psy12143 406 KILPCDNLDEAARLAVKLSSIV 427 (443)
Q Consensus 406 P~~~f~s~e~Av~al~~l~~~~ 427 (443)
.++..+..+-+-.++..|.+.+
T Consensus 253 ttv~~~~~~~g~~a~~~l~~~i 274 (305)
T cd06324 253 SVSAGGHFTEGGWALVLLYDYA 274 (305)
T ss_pred EEEecCCcccHHHHHHHHHHHH
Confidence 4333333334444444445444
No 188
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=40.59 E-value=80 Score=33.18 Aligned_cols=82 Identities=21% Similarity=0.260 Sum_probs=50.3
Q ss_pred HHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEE------EeCCCCHHHHHHHHHHCCCCcc---c
Q psy12143 339 EAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIIC------RLQGTNVDDAKVLIASAAMKIL---P 409 (443)
Q Consensus 339 ~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~------~~~g~~~~~~~~~L~~~GiP~~---~ 409 (443)
..+-.+.++.++|.++| |+ -.-++.+|++.+++ ...|++- ++-+ ...-+++.|.++|||.. +
T Consensus 53 ~~lv~fA~~~~idl~vV---GP---E~pL~~GvvD~l~~--~Gi~vFGPsk~AA~lE~-SK~faK~fm~k~~IPta~y~~ 123 (428)
T COG0151 53 EALVAFAKEKNVDLVVV---GP---EAPLVAGVVDALRA--AGIPVFGPTKAAAQLEG-SKAFAKDFMKKYGIPTAEYEV 123 (428)
T ss_pred HHHHHHHHHcCCCEEEE---CC---cHHHhhhhHHHHHH--CCCceeCcCHHHHHHHh-hHHHHHHHHHHcCCCcccccc
Confidence 34555567788998876 32 23467889988888 4566651 0111 12234678889999963 3
Q ss_pred CCCHHHHHHHHHHHHH-HHhH
Q psy12143 410 CDNLDEAARLAVKLSS-IVGL 429 (443)
Q Consensus 410 f~s~e~Av~al~~l~~-~~~~ 429 (443)
|+++++|..-+..... ++.|
T Consensus 124 f~~~e~a~ayi~~~g~piVVK 144 (428)
T COG0151 124 FTDPEEAKAYIDEKGAPIVVK 144 (428)
T ss_pred cCCHHHHHHHHHHcCCCEEEe
Confidence 6677777777766644 4433
No 189
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.06 E-value=72 Score=31.80 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=43.7
Q ss_pred CcEEEEEcchhH-HHHH----HHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 296 GSIGCLVNGAGL-AMAT----MDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 296 g~iaiitngGG~-g~la----~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
..+++|-.|.=. ...+ .-.|++.|.. ...+++..+.+.+.+.+.++.+-+||+||+|+|..|
T Consensus 33 p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq~P 99 (286)
T PRK14175 33 PKLSVILVGNDGASQSYVRSKKKAAEKIGMI-SEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVP 99 (286)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 457666655322 2222 2356666754 456677888888889999999999999999999654
No 190
>TIGR01506 ribC_arch riboflavin synthase. This archaeal protein catalyzes the same reaction, the final step in riboflavin biosynthesis, as bacterial riboflavin biosynthesis alpha chain. However, it is more similar in sequence to 6,7-dimethyl-8-ribityllumazine synthase, which catalyzes the previous reaction and which (in bacteria) is called the riboflavin synthase beta chain.
Probab=39.73 E-value=2.9e+02 Score=24.94 Aligned_cols=111 Identities=10% Similarity=-0.012 Sum_probs=62.6
Q ss_pred HHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEE--cc-CCCCC--hHHHHHHHHHHHHHcCCCC
Q psy12143 308 AMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVN--IF-GGIMR--CDVIAEGIIAAAQELSLKI 382 (443)
Q Consensus 308 g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~--i~-~~~~~--~~~~a~~i~~~~~~~~~~k 382 (443)
+--+.|.+..+|. -.+ +++.-=+-.-.+--+++.+.++.++|+|+.. +. +.... ....+.+|.+..-+ .++
T Consensus 15 ~~gA~~~L~~~g~-g~~-i~v~~VPGa~EiP~aak~l~~~~~~DaVIaLG~VIrGeT~Hfd~V~vs~GL~~lsl~--~~~ 90 (151)
T TIGR01506 15 GGAAIDELRKHTA-GIK-IIRRTVPGIKDLPVAAKKLLEEEGCEMVITLGWVGPEEKDKLSYHEASTGLIQVQLM--TNK 90 (151)
T ss_pred HHHHHHHHHhcCC-CCe-EEEEECCcHhHHHHHHHHHHhcCCCCEEEEeceEEcCCCCcEeHHHHHHHHHHHHhh--hCC
Confidence 4447788888652 223 5533222222345566666777789999862 22 22222 23666788777655 689
Q ss_pred cEEEEeCCCCHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHHHHH
Q psy12143 383 PIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSSIV 427 (443)
Q Consensus 383 piv~~~~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~~~ 427 (443)
||...+..++.+.+.+++ |.-. -+=-.+|+.+...|..+.
T Consensus 91 PVi~VlT~e~eeQA~~Ra---g~~~--~nkG~eaA~aaleMi~l~ 130 (151)
T TIGR01506 91 HVIDVTVHEDEAEDPEEL---KVLA--DNRAREHAQNLIMLLFKP 130 (151)
T ss_pred CEEEEEeeCCHHHHHHHh---cccc--cChHHHHHHHHHHHHHHH
Confidence 998844444555555544 4322 344456666666666553
No 191
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.63 E-value=73 Score=31.76 Aligned_cols=62 Identities=11% Similarity=0.186 Sum_probs=44.2
Q ss_pred CcEEEEEcchhHH-HH----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 296 GSIGCLVNGAGLA-MA----TMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 296 g~iaiitngGG~g-~l----a~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
..+++|-.|--.+ .. -.-+|++.|.. .--+.+..+.+.+.+.+.++.+-+||+||+|+|..|
T Consensus 32 P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvqlP 98 (286)
T PRK14184 32 PGLAVILVGEDPASQVYVRNKERACEDAGIV-SEAFRLPADTTQEELEDLIAELNARPDIDGILLQLP 98 (286)
T ss_pred CEEEEEEeCCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCcCceEEEecC
Confidence 4577766553332 22 23467777755 334667788888889999999999999999999655
No 192
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=39.45 E-value=2.5e+02 Score=29.76 Aligned_cols=89 Identities=25% Similarity=0.298 Sum_probs=57.0
Q ss_pred CCcEEEEEcchhHHHHHHHHHHHcCCC-CC-----CeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCC-CCChHHH
Q psy12143 295 DGSIGCLVNGAGLAMATMDIIKLHGGE-PA-----NFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGG-IMRCDVI 367 (443)
Q Consensus 295 ~g~iaiitngGG~g~la~D~~~~~G~~-~~-----NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~-~~~~~~~ 367 (443)
..+|||||+-.|+++ -|.+.-.--. |. =|.=+=|..-.....++++..-+.+.+|.++|.=.|| +. ++
T Consensus 135 p~~IGVITS~tgAai--rDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiE---DL 209 (440)
T COG1570 135 PKKIGVITSPTGAAL--RDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIE---DL 209 (440)
T ss_pred CCeEEEEcCCchHHH--HHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHH---HH
Confidence 466999999988776 5766544311 11 1222335555667999999999999999999854444 31 11
Q ss_pred H----HHHHHHHHHcCCCCcEEEEeCC
Q psy12143 368 A----EGIIAAAQELSLKIPIICRLQG 390 (443)
Q Consensus 368 a----~~i~~~~~~~~~~kpiv~~~~g 390 (443)
+ +.+++++.. .+.|||.-.+-
T Consensus 210 W~FNdE~vaRAi~~--s~iPvISAVGH 234 (440)
T COG1570 210 WAFNDEIVARAIAA--SRIPVISAVGH 234 (440)
T ss_pred hccChHHHHHHHHh--CCCCeEeeccc
Confidence 1 455555554 57999865553
No 193
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=39.25 E-value=2.7e+02 Score=27.67 Aligned_cols=100 Identities=18% Similarity=0.240 Sum_probs=50.9
Q ss_pred HHHHHHcCCCCCCeeee-cCCCCHHHHHHHHHHHHc-C--CCccEEEEEccCCCCChHHHHHHHHHHHHHcCC-CCcEEE
Q psy12143 312 MDIIKLHGGEPANFLDV-GGGATAAQVKEAFKIITA-D--PKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSL-KIPIIC 386 (443)
Q Consensus 312 ~D~~~~~G~~~~NPvDl-~g~~~~~~~~~al~~ll~-d--p~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~-~kpiv~ 386 (443)
.|++..+|.+.. +.-. .++.+.+.-+++++-+++ . |.+++|++. .+.+|.++.+++++.+. +.|| +
T Consensus 185 ~~al~~~g~~~~-~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ai~~~-------~d~~A~gvl~al~~~Gl~~vpV-v 255 (330)
T PRK15395 185 IKELNDKGIKTE-QLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIAN-------NDAMAMGAVEALKAHNKSSIPV-F 255 (330)
T ss_pred HHHHHhcCCCee-eeecccCCcCHHHHHHHHHHHHhhCcCCCeeEEEEC-------CchHHHHHHHHHHhcCCCCCeE-E
Confidence 345555554322 2212 345454443444555554 2 578888852 25678899999998766 5663 2
Q ss_pred EeCCCCHHHHHHHHHHCCC-CcccCCCHHHHHHHHHHH
Q psy12143 387 RLQGTNVDDAKVLIASAAM-KILPCDNLDEAARLAVKL 423 (443)
Q Consensus 387 ~~~g~~~~~~~~~L~~~Gi-P~~~f~s~e~Av~al~~l 423 (443)
.+.+ .+.+...+.+ |. -..+..++.+-.+....+
T Consensus 256 g~D~--~~~~~~~~~~-g~~~ttv~~~~~~~G~~a~~~ 290 (330)
T PRK15395 256 GVDA--LPEALALVKS-GAMAGTVLNDANNQAKATFDL 290 (330)
T ss_pred eeCC--CHHHHHHHHh-CCceEEEecCHHHHHHHHHHH
Confidence 2222 3344444433 32 112244555555544443
No 194
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.14 E-value=79 Score=31.51 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=42.9
Q ss_pred CcEEEEEcchh-HHHHHH----HHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 296 GSIGCLVNGAG-LAMATM----DIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 296 g~iaiitngGG-~g~la~----D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
..+++|-.|.- ....+. -.|++.|.. .--+++..+.+.+.+.+.++.+-+||+||+|+|..|
T Consensus 34 P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlP 100 (285)
T PRK10792 34 PGLAVVLVGSDPASQVYVASKRKACEEVGFV-SRSYDLPETTSEAELLALIDELNADPTIDGILVQLP 100 (285)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 35666654432 233333 356666643 345667778888889999999999999999999655
No 195
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=38.67 E-value=64 Score=35.51 Aligned_cols=54 Identities=9% Similarity=0.138 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHcCCCccEEEEEcc--CC--CCChHHHHHHHHHHHHHcCCCCcEEEEe
Q psy12143 332 ATAAQVKEAFKIITADPKVCAIMVNIF--GG--IMRCDVIAEGIIAAAQELSLKIPIICRL 388 (443)
Q Consensus 332 ~~~~~~~~al~~ll~dp~vd~vlv~i~--~~--~~~~~~~a~~i~~~~~~~~~~kpiv~~~ 388 (443)
...+.+.++++...+||+|++|++.+- ++ .+..+++.+.|.++ ++ .+|||+++.
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~f-k~--sgKpVvA~~ 133 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEF-KD--SGKPVYAYG 133 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHH-Hh--cCCeEEEEE
Confidence 344568899999999999999998542 22 23345666666654 33 479998753
No 196
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=38.58 E-value=1.3e+02 Score=29.38 Aligned_cols=65 Identities=28% Similarity=0.314 Sum_probs=43.6
Q ss_pred HHHHHHHcCCCCCCeeee-cCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcC-CCCc
Q psy12143 311 TMDIIKLHGGEPANFLDV-GGGATAAQ-VKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELS-LKIP 383 (443)
Q Consensus 311 a~D~~~~~G~~~~NPvDl-~g~~~~~~-~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~-~~kp 383 (443)
..|++.++|.+ .++..+ .++.+.+. +..+-+++...|++|+|+.. .|.+|.++.+++++.+ .+.|
T Consensus 141 y~~Al~~~Gl~-~~~~~i~~~~~~~~~g~~~~~~ll~~~p~idai~~~-------nd~~A~ga~~~l~~~gr~~ip 208 (279)
T PF00532_consen 141 YRDALKEAGLP-IDEEWIFEGDFDYESGYEAARELLESHPDIDAIFCA-------NDMMAIGAIRALRERGRLKIP 208 (279)
T ss_dssp HHHHHHHTTSC-EEEEEEEESSSSHHHHHHHHHHHHHTSTT-SEEEES-------SHHHHHHHHHHHHHTT-TCTT
T ss_pred HHHHHHHcCCC-CCcccccccCCCHHHHHHHHHHHHhhCCCCEEEEEe-------CHHHHHHHHHHHHHcCCcccC
Confidence 46888888874 333344 56777665 44445555567899998851 4789999999999876 4445
No 197
>PLN02419 methylmalonate-semialdehyde dehydrogenase [acylating]
Probab=38.53 E-value=3.7e+02 Score=29.81 Aligned_cols=82 Identities=17% Similarity=0.127 Sum_probs=47.3
Q ss_pred CCcEEEEEcch---hHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHH
Q psy12143 295 DGSIGCLVNGA---GLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGI 371 (443)
Q Consensus 295 ~g~iaiitngG---G~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i 371 (443)
.||..|+-.|- ..+.+.+.++.+.|..++-.==+.|+. + ..+.+.+||.+|.|.. +|+ ..+.+.|
T Consensus 276 AGNtVVlKPSe~tp~ta~~l~~l~~eAGlP~GvvnvV~G~~--~----~~~~L~~~~~Vd~V~F--TGS----t~vG~~I 343 (604)
T PLN02419 276 CGNTFILKPSEKDPGASVILAELAMEAGLPDGVLNIVHGTN--D----TVNAICDDEDIRAVSF--VGS----NTAGMHI 343 (604)
T ss_pred cCCEEEEeCCCCCcHHHHHHHHHHHHhCcCcceEEEEeCCh--H----HHHHHHhCCCCCEEEE--eCC----hHHHHHH
Confidence 46655554333 346677888888886543322234432 2 3466788999998773 443 3455666
Q ss_pred HHHHHHcCCCCcEEEEeCC
Q psy12143 372 IAAAQELSLKIPIICRLQG 390 (443)
Q Consensus 372 ~~~~~~~~~~kpiv~~~~g 390 (443)
.+.+.+ .-||++.-++|
T Consensus 344 ~~~Aa~--~lk~v~LELGG 360 (604)
T PLN02419 344 YARAAA--KGKRIQSNMGA 360 (604)
T ss_pred HHHHhc--cCCcEEEecCC
Confidence 655554 34666544444
No 198
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.36 E-value=79 Score=31.49 Aligned_cols=62 Identities=13% Similarity=0.221 Sum_probs=43.7
Q ss_pred CcEEEEEcchhH-HHHH----HHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 296 GSIGCLVNGAGL-AMAT----MDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 296 g~iaiitngGG~-g~la----~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
..+++|-.|--. ...+ .-.|++.|.. ..-+++..+.+.+.+.+.++.+-+|++||+|++..|
T Consensus 33 P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 99 (284)
T PRK14190 33 PGLAVILVGDDPASHSYVRGKKKAAEKVGIY-SELYEFPADITEEELLALIDRLNADPRINGILVQLP 99 (284)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 456666544322 2222 3456666754 455677888888889999999999999999999655
No 199
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.20 E-value=81 Score=31.45 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=44.1
Q ss_pred CcEEEEEcchhHH-HHH----HHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q psy12143 296 GSIGCLVNGAGLA-MAT----MDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFG 359 (443)
Q Consensus 296 g~iaiitngGG~g-~la----~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~ 359 (443)
..+++|-.|--.+ ..+ .-+|++.|.. .--+.+..+.+.+.+.+.++.+-+|++||+|+|..|.
T Consensus 33 p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Pl 100 (285)
T PRK14189 33 PGLAVILVGDNPASQVYVRNKVKACEDNGFH-SLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPL 100 (285)
T ss_pred CeEEEEEeCCCchHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCC
Confidence 4577766553322 222 2356666754 3456778888888899999999999999999996553
No 200
>cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like. NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate.
Probab=37.81 E-value=4.2e+02 Score=28.11 Aligned_cols=69 Identities=16% Similarity=0.130 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHcCCCCCCeeee-cCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcE
Q psy12143 306 GLAMATMDIIKLHGGEPANFLDV-GGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPI 384 (443)
Q Consensus 306 G~g~la~D~~~~~G~~~~NPvDl-~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpi 384 (443)
..+....+++.+.|..+ +-+-+ .|+. . .-+.++++|.+|.|. ++|+ ....+.|.+.+.+ ..||+
T Consensus 183 ~~~~~l~~~~~~aglP~-gvv~~v~g~~-----~-~~~~L~~~~~v~~V~--fTGS----~~~G~~i~~~aa~--~~~~~ 247 (477)
T cd07113 183 LTLLRVAELAKEAGIPD-GVLNVVNGKG-----A-VGAQLISHPDVAKVS--FTGS----VATGKKIGRQAAS--DLTRV 247 (477)
T ss_pred HHHHHHHHHHHHcCcCC-CcEEEEecCc-----h-HHHHHhcCCCCCEEE--EECc----HHHHHHHHHHHHh--hcCce
Confidence 35667789999888653 33333 2322 1 346778999999876 3443 3445556555544 23555
Q ss_pred EEEeC
Q psy12143 385 ICRLQ 389 (443)
Q Consensus 385 v~~~~ 389 (443)
+.-++
T Consensus 248 ~lElG 252 (477)
T cd07113 248 TLELG 252 (477)
T ss_pred EeecC
Confidence 44333
No 201
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.63 E-value=78 Score=31.61 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=43.0
Q ss_pred CcEEEEEcchhH-HHHH----HHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 296 GSIGCLVNGAGL-AMAT----MDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 296 g~iaiitngGG~-g~la----~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
..+++|-.|.-. ...+ .-+|++.|.. ..-+.+..+.+.+.+.+.++.+-+|++||+|++..|
T Consensus 39 P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlvqlP 105 (287)
T PRK14176 39 PGLATILVGDDPASKMYVRLKHKACERVGIR-AEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLP 105 (287)
T ss_pred CeEEEEEECCCcchHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCC
Confidence 456666555322 2222 2356777744 445667788888889999999999999999999544
No 202
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.47 E-value=86 Score=31.20 Aligned_cols=62 Identities=11% Similarity=0.188 Sum_probs=42.7
Q ss_pred CcEEEEEcchh-HHHHHH----HHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 296 GSIGCLVNGAG-LAMATM----DIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 296 g~iaiitngGG-~g~la~----D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
..+++|-.|-= ....+. -.|++.|.. .--+++..+.+.+.+.+.++.+-+||+||+|+|..|
T Consensus 31 P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIivq~P 97 (282)
T PRK14166 31 SCLAVILVGDNPASQTYVKSKAKACEECGIK-SLVYHLNENTTQNELLALINTLNHDDSVHGILVQLP 97 (282)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 45666655532 222222 356666644 445677788888889999999999999999999654
No 203
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=37.27 E-value=1.3e+02 Score=31.14 Aligned_cols=56 Identities=25% Similarity=0.320 Sum_probs=34.5
Q ss_pred EEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCee
Q psy12143 76 IVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKE 147 (443)
Q Consensus 76 vVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~E 147 (443)
|+||++ +|.=| =||..+.|.+|+...=++-..+.. ....|..+..|+|||=+. ..|
T Consensus 260 ViVKAD--aGTYG---------MGImtv~~~~ev~~LNrK~RnKM~----~~Keg~~V~~VIiQEGV~-T~E 315 (403)
T TIGR02049 260 VIVKAD--AGTYG---------MGIMTATSGEEVLGLNRKERNKMA----KVKEGLEVSEVIIQEGVY-TFE 315 (403)
T ss_pred EEEEcC--CCCCC---------ceEEEecCHHHHHHhhhhhhhhcc----cccCCCccceEEEecCcc-eee
Confidence 889997 32112 278788999998765433222211 111467789999998875 344
No 204
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.15 E-value=2.7e+02 Score=26.16 Aligned_cols=87 Identities=16% Similarity=0.103 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHH-HHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCC-CcEEEEeCCCCHHHHHHHHHHCC--CC
Q psy12143 331 GATAAQVKEAFKI-ITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLK-IPIICRLQGTNVDDAKVLIASAA--MK 406 (443)
Q Consensus 331 ~~~~~~~~~al~~-ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~-kpiv~~~~g~~~~~~~~~L~~~G--iP 406 (443)
+.+.+...+.++. +.+.|++++|+++ .+.+|.++.+++++.+.. +..++...+ .++..+.+++.. +.
T Consensus 166 ~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a~g~~~al~~~g~~~~~~ivg~d~--~~~~~~~i~~g~~~~~ 236 (274)
T cd06311 166 NWNRDDAFSVMQDLLTKFPKIDAVWAH-------DDDMAVGVLAAIKQAGRTDIKFVVGGAG--SKDMIKMIMDGDPLIP 236 (274)
T ss_pred CCcHHHHHHHHHHHHHhCCCcCEEEEC-------CCcHHHHHHHHHHHcCCCCCceEEEeCC--CHHHHHHHHCCCCcee
Confidence 3344443344444 4457889998852 245678888888876433 222232223 456667676541 44
Q ss_pred cccCCCHHHHHHHHHHHHHH
Q psy12143 407 ILPCDNLDEAARLAVKLSSI 426 (443)
Q Consensus 407 ~~~f~s~e~Av~al~~l~~~ 426 (443)
..+..+|..+-.++..+.++
T Consensus 237 ~~v~~~~~~~~~~~~~~~~~ 256 (274)
T cd06311 237 ADVLYPPSMIASAIDLTVAL 256 (274)
T ss_pred EEEecCHHHHHHHHHHHHHH
Confidence 43455665554444444433
No 205
>PRK12616 pyridoxal kinase; Reviewed
Probab=37.14 E-value=1.8e+02 Score=28.34 Aligned_cols=78 Identities=10% Similarity=0.029 Sum_probs=49.1
Q ss_pred cchhHHHHHHH--HHHHcCC---------CCCCeeee----cCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHH
Q psy12143 303 NGAGLAMATMD--IIKLHGG---------EPANFLDV----GGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVI 367 (443)
Q Consensus 303 ngGG~g~la~D--~~~~~G~---------~~~NPvDl----~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~ 367 (443)
.|||.|+. +| .+..+|. .+.|+... .-..+.+-+..-++.+++|-.+|+|.+-..+ ..+.
T Consensus 14 ~sggaGi~-aD~~t~~~~g~~~~~~~T~~t~q~~~~~~~~~v~~~~~~~i~~ql~~l~~d~~~~aikiG~l~----s~~~ 88 (270)
T PRK12616 14 SSGGAGIQ-ADLKTFQEKNVYGMTALTVVVAMDPENSWDHQVFPIDTDTIRAQLSTIVDGIGVDAMKTGMLP----TVDI 88 (270)
T ss_pred CCchHHHH-HHHHHHHHcCCcccceeeEEeeEeCCCcceeEEEECCHHHHHHHHHHHHcCCCCCEEEECCCC----CHHH
Confidence 46788875 46 4666662 23565432 1234456678889999999899999972222 3456
Q ss_pred HHHHHHHHHHcCCCCcEEE
Q psy12143 368 AEGIIAAAQELSLKIPIIC 386 (443)
Q Consensus 368 a~~i~~~~~~~~~~kpiv~ 386 (443)
++.+.+.+++.+ .+|+|+
T Consensus 89 i~~i~~~l~~~~-~~~vV~ 106 (270)
T PRK12616 89 IELAADTIKEKQ-LKNVVI 106 (270)
T ss_pred HHHHHHHHHhcC-CCCEEE
Confidence 777788777642 356663
No 206
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=36.67 E-value=1e+02 Score=27.68 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHcCCCccEEEE--EccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCC
Q psy12143 334 AAQVKEAFKIITADPKVCAIMV--NIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGT 391 (443)
Q Consensus 334 ~~~~~~al~~ll~dp~vd~vlv--~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~ 391 (443)
.+.+...|..+..+++++.|.+ |.+||. ..-+..|.++.+. .++|+++...|.
T Consensus 14 ~~~~~~~L~~l~~~~~~~~i~l~InSpGG~---v~~~~~i~~~i~~--~~~~v~~~~~g~ 68 (162)
T cd07013 14 ANQFAAQLLFLGAVNPEKDIYLYINSPGGD---VFAGMAIYDTIKF--IKADVVTIIDGL 68 (162)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEECCCCc---HHHHHHHHHHHHh--cCCCceEEEEee
Confidence 3457777888888888777776 667663 1234566777776 456777655443
No 207
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.64 E-value=2.1e+02 Score=28.37 Aligned_cols=63 Identities=14% Similarity=0.159 Sum_probs=42.2
Q ss_pred CcEEEEEcchhHH-H----HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q psy12143 296 GSIGCLVNGAGLA-M----ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFG 359 (443)
Q Consensus 296 g~iaiitngGG~g-~----la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~ 359 (443)
..+++|-.|-=.+ . +-.-.|++.|.. ...+.+..+.+.+.+.+.++.+.+|+++++++|..|.
T Consensus 34 p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~-~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPl 101 (283)
T PRK14192 34 PILATILVGDDPASATYVRMKGNACRRVGMD-SLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPV 101 (283)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHHcCCe-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCC
Confidence 4677766553222 2 222355666643 4555566677788899999999999999999996654
No 208
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.13 E-value=89 Score=31.27 Aligned_cols=63 Identities=10% Similarity=0.151 Sum_probs=44.2
Q ss_pred CCcEEEEEcchhHHH-----HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 295 DGSIGCLVNGAGLAM-----ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 295 ~g~iaiitngGG~g~-----la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
...+++|-.|-=.+. .-.-+|++.|.. .--+++..+.+.+.+.+.++.+-+||+||+|+|..|
T Consensus 31 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlP 98 (293)
T PRK14185 31 RPHLAAILVGHDGGSETYVANKVKACEECGFK-SSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLP 98 (293)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecC
Confidence 345776665532222 223467777754 334678888888889999999999999999999655
No 209
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.06 E-value=90 Score=31.25 Aligned_cols=62 Identities=11% Similarity=0.139 Sum_probs=43.4
Q ss_pred CcEEEEEcchhH-HH----HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 296 GSIGCLVNGAGL-AM----ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 296 g~iaiitngGG~-g~----la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
..+++|-.|-=. .. .-.-+|++.|.. ..-+.+..+.+.+.+.+.++.+-+||+|++|+|..|
T Consensus 33 P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlvqlP 99 (294)
T PRK14187 33 PCLIVILVGDDPASQLYVRNKQRKAEMLGLR-SETILLPSTISESSLIEKINELNNDDSVHGILVQLP 99 (294)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 457666655322 22 223466777754 445667788888889999999999999999999655
No 210
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.05 E-value=90 Score=31.07 Aligned_cols=63 Identities=16% Similarity=0.205 Sum_probs=43.9
Q ss_pred CCcEEEEEcchhHHH-H----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 295 DGSIGCLVNGAGLAM-A----TMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 295 ~g~iaiitngGG~g~-l----a~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
...+++|-.|.=.+. . -.-+|++.|.. ...+++..+.+.+.+.+.++.+-+||+|++|+|..|
T Consensus 31 ~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~P 98 (282)
T PRK14180 31 TPKLVAIIVGNDPASKTYVASKEKACAQVGID-SQVITLPEHTTESELLELIDQLNNDSSVHAILVQLP 98 (282)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCC
Confidence 345666665532222 1 23456777754 455677788888889999999999999999999554
No 211
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.93 E-value=88 Score=31.37 Aligned_cols=62 Identities=10% Similarity=0.086 Sum_probs=43.8
Q ss_pred CcEEEEEcchhH-HHH----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 296 GSIGCLVNGAGL-AMA----TMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 296 g~iaiitngGG~-g~l----a~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
..+++|-.|-=. ... ..-+|++.|.. .--+++..+.+.+.+.+.++.+-+||+||+|+|..|
T Consensus 34 P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIivqlP 100 (297)
T PRK14168 34 PGLVTILVGESPASLSYVTLKIKTAHRLGFH-EIQDNQSVDITEEELLALIDKYNNDDSIHGILVQLP 100 (297)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 456666555322 222 23467777755 335567788888889999999999999999999655
No 212
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=35.88 E-value=3.1e+02 Score=25.87 Aligned_cols=87 Identities=13% Similarity=0.054 Sum_probs=46.6
Q ss_pred CCHHHHHHHHH-HHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcccC
Q psy12143 332 ATAAQVKEAFK-IITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPC 410 (443)
Q Consensus 332 ~~~~~~~~al~-~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~~f 410 (443)
.+.+.-.+.++ ++.+.|++|+|+++ +.++.++.+++++.+.++.|.+.... ..+...+.|++..+...+.
T Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~i~~~--------d~~a~~~~~~l~~~g~p~di~vig~~-~~p~~~~~l~~g~~~ttv~ 236 (268)
T cd06306 166 TGKEVQRKLVEEALEAHPDIDYIVGS--------AVAAEAAVGILRQRGLTDQIKIVSTY-LSHAVYRGLKRGKILAAPT 236 (268)
T ss_pred ccHHHHHHHHHHHHHhCCCcCEEeec--------chhhhHHHHHHHhcCCCCCeEEEecC-CCHHHHHHHHcCceEEEEe
Confidence 34343333444 44467889988731 46678888888886544444332222 2345667777655444445
Q ss_pred CCHHH-HHHHHHHHHHHH
Q psy12143 411 DNLDE-AARLAVKLSSIV 427 (443)
Q Consensus 411 ~s~e~-Av~al~~l~~~~ 427 (443)
.++.. +-.++..+.+++
T Consensus 237 ~~~~~~G~~a~~~l~~~l 254 (268)
T cd06306 237 DSMVLQGRLAIDQAVRIL 254 (268)
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 56654 333444444433
No 213
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.85 E-value=90 Score=31.11 Aligned_cols=62 Identities=10% Similarity=0.185 Sum_probs=43.1
Q ss_pred CcEEEEEcchh-HHHHH----HHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 296 GSIGCLVNGAG-LAMAT----MDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 296 g~iaiitngGG-~g~la----~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
..+++|-.|-= ....+ .-.|++.|.. ..-+++..+.+.+.+.+.++.+-+||+||+|+|..|
T Consensus 32 P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivqlP 98 (284)
T PRK14170 32 PGLAVVLVGDNQASRTYVRNKQKRTEEAGMK-SVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLP 98 (284)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecC
Confidence 45666655522 22222 3466777754 345677888888889999999999999999999654
No 214
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=35.71 E-value=83 Score=27.30 Aligned_cols=69 Identities=20% Similarity=0.144 Sum_probs=36.6
Q ss_pred cEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeC-CCC--HHHHHHHHHHCCC-------CcccCCCHHHHHHHH
Q psy12143 351 CAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQ-GTN--VDDAKVLIASAAM-------KILPCDNLDEAARLA 420 (443)
Q Consensus 351 d~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~-g~~--~~~~~~~L~~~Gi-------P~~~f~s~e~Av~al 420 (443)
|++++ .+||....+++.+.+.-..-....++|+++.-. |-. -.+..+.+.+.|. .+++.+|+++|++.+
T Consensus 55 da~I~-lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 55 DAFIA-LPGGIGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEGFISPDDLDLLHFVDDPEEALEYI 133 (133)
T ss_dssp SEEEE-ES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTTSSSHHHHCCEEEESSHHHHHHHH
T ss_pred CEEEE-EecCCchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHhhC
Confidence 56555 677755467777765443222222349887543 332 1222334455552 223488999998764
No 215
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=35.62 E-value=1.5e+02 Score=31.79 Aligned_cols=85 Identities=18% Similarity=0.240 Sum_probs=54.2
Q ss_pred cEEEEE---cchhHHHHH-HHHHHHcCCC---------CCCeeeecC--CCCHHHHHHHHHHHHcCCCccEEEEEccCCC
Q psy12143 297 SIGCLV---NGAGLAMAT-MDIIKLHGGE---------PANFLDVGG--GATAAQVKEAFKIITADPKVCAIMVNIFGGI 361 (443)
Q Consensus 297 ~iaiit---ngGG~g~la-~D~~~~~G~~---------~~NPvDl~g--~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~ 361 (443)
.|.+|+ .+||.|+.+ .=.+...|.. ..|...+.. ..+.+-+..-++.+++|-.+++|.+-. .
T Consensus 11 ~vL~IaGsD~~gGAGi~aDl~t~~a~G~~~~~v~Talt~q~t~~v~~~~~~~~~~~~~ql~~~~~d~~~~aik~G~---l 87 (502)
T PLN02898 11 HVLTVAGSDSGAGAGIQADIKACAARGVYCTTAITAVTAQNTVGVQGVHAVPLDFVAEQLKSVLSDMPVDVVKTGM---L 87 (502)
T ss_pred eEEEEeeeCCCcHHHHHHHHHHHHHcCCEecceeeEEEEEcCCccceeeeCCHHHHHHHHHHHHhCCCCCEEEECC---c
Confidence 444443 578999988 7788999942 245544332 334444677788888988999988622 2
Q ss_pred CChHHHHHHHHHHHHHcCCCCcEEE
Q psy12143 362 MRCDVIAEGIIAAAQELSLKIPIIC 386 (443)
Q Consensus 362 ~~~~~~a~~i~~~~~~~~~~kpiv~ 386 (443)
. ..++++.|.+.+++.+ .+|+|+
T Consensus 88 ~-~~~~i~~i~~~l~~~~-~~~vVl 110 (502)
T PLN02898 88 P-SAEIVKVLCQALKEFP-VKALVV 110 (502)
T ss_pred C-CHHHHHHHHHHHHhCC-CCCEEE
Confidence 2 2566777887777632 234663
No 216
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=35.61 E-value=1e+02 Score=25.04 Aligned_cols=50 Identities=24% Similarity=0.396 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHc--CCCCcEEEEeCC
Q psy12143 333 TAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQEL--SLKIPIICRLQG 390 (443)
Q Consensus 333 ~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~--~~~kpiv~~~~g 390 (443)
+.+...++++.+++++++..|++. +.+++.+-+...+. ....|+++...+
T Consensus 26 ~~ee~~~~l~~l~~~~~~gIIii~--------e~~~~~~~~~l~~~~~~~~~P~iv~IP~ 77 (95)
T PF01990_consen 26 DPEEAEEALKELLKDEDVGIIIIT--------EDLAEKIRDELDEYREESSLPLIVEIPS 77 (95)
T ss_dssp SHHHHHHHHHHHHHHTTEEEEEEE--------HHHHTTHHHHHHHHHHTSSSSEEEEEST
T ss_pred CHHHHHHHHHHHhcCCCccEEEee--------HHHHHHHHHHHHHHHhccCCceEEEcCC
Confidence 667799999999999999988872 33333333332221 257899886643
No 217
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.53 E-value=91 Score=31.25 Aligned_cols=62 Identities=15% Similarity=0.227 Sum_probs=43.6
Q ss_pred CcEEEEEcchh-HHHHH----HHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 296 GSIGCLVNGAG-LAMAT----MDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 296 g~iaiitngGG-~g~la----~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
..+++|-.|-= ....+ .-+|++.|.. ...+++..+.+.+.+.+.++.+-+||+||+|+|..|
T Consensus 32 P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 98 (295)
T PRK14174 32 PGLTVIIVGEDPASQVYVRNKAKSCKEIGMN-STVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQP 98 (295)
T ss_pred CeEEEEEeCCChHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 45666655432 22222 3366777754 456677888888889999999999999999999644
No 218
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.49 E-value=1e+02 Score=30.74 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=43.1
Q ss_pred CcEEEEEcchh-HHHHHH----HHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 296 GSIGCLVNGAG-LAMATM----DIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 296 g~iaiitngGG-~g~la~----D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
..+++|-.|.= ....+. -+|++.|.. .--+++..+.+.+.+.+.++.+-+||+||+|++..|
T Consensus 31 P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlP 97 (282)
T PRK14169 31 PTLAVVLVGSDPASEVYVRNKQRRAEDIGVR-SLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLP 97 (282)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 45666655532 222333 356666644 345677788888889999999999999999999655
No 219
>PRK06455 riboflavin synthase; Provisional
Probab=35.37 E-value=3.4e+02 Score=24.56 Aligned_cols=79 Identities=15% Similarity=0.063 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEE-ccCCC----CChHHHHHHHHHHHHHcCCC
Q psy12143 307 LAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVN-IFGGI----MRCDVIAEGIIAAAQELSLK 381 (443)
Q Consensus 307 ~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~-i~~~~----~~~~~~a~~i~~~~~~~~~~ 381 (443)
+.--+.|.+..+| .-.| +++.-=+-.-.+--+.+.++++.++|+|+.. ..+.. --|..++.++.++.-+ ++
T Consensus 16 L~~gAi~~L~~~g-~~~~-I~v~~VPGa~ELP~aakkL~~~~~yDaVIaLG~VG~t~h~d~Va~~vS~GL~~lsL~--t~ 91 (155)
T PRK06455 16 MGSAAIDELRKLD-PSAK-IIRYTVPGIKDLPVAAKKLIEEEGCDIVMALGMPGPTEKDKYCAHEASIGLIMAQLM--TN 91 (155)
T ss_pred HHHHHHHHHHhcC-CCCc-eEEEECCCHHHHHHHHHHHHhcCCCCEEEEecceeccCcchhHHHHHHHHHHHHHhh--hC
Confidence 3445778888877 2233 4443222222355566777778889999972 11222 1245667777777655 68
Q ss_pred CcEEEEeC
Q psy12143 382 IPIICRLQ 389 (443)
Q Consensus 382 kpiv~~~~ 389 (443)
+||+-++.
T Consensus 92 ~PVi~v~v 99 (155)
T PRK06455 92 KHIIEVFV 99 (155)
T ss_pred CCEEEEEe
Confidence 99986554
No 220
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=35.35 E-value=2.6e+02 Score=26.02 Aligned_cols=76 Identities=18% Similarity=0.198 Sum_probs=42.2
Q ss_pred CcEEEEEcchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHH
Q psy12143 296 GSIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAE 369 (443)
Q Consensus 296 g~iaiitngGG~g~------la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~ 369 (443)
++|++++..-+... -..+.+...|..... . +.++.+.+...+.++.+++.+.+++|++. .+.++.
T Consensus 117 ~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~~~~~ai~~~-------~d~~a~ 187 (264)
T cd01574 117 RTIAHVAGPEEWLSARARLAGWRAALEAAGIAPPP-V-LEGDWSAESGYRAGRELLREGDPTAVFAA-------NDQMAL 187 (264)
T ss_pred CEEEEEecCCccchHHHHHHHHHHHHHHCCCCcce-e-eecCCCHHHHHHHHHHHHhCCCCcEEEEc-------CcHHHH
Confidence 45777755433211 134555655544322 2 22334444445555555555448988851 356788
Q ss_pred HHHHHHHHcCC
Q psy12143 370 GIIAAAQELSL 380 (443)
Q Consensus 370 ~i~~~~~~~~~ 380 (443)
++++++++.+.
T Consensus 188 g~~~~~~~~g~ 198 (264)
T cd01574 188 GVLRALHELGL 198 (264)
T ss_pred HHHHHHHHcCC
Confidence 89999888654
No 221
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=35.34 E-value=63 Score=31.80 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCC
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAG 85 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~ 85 (443)
-+++.....|+.. +++|+..-.. +.+. ..|+||....|
T Consensus 113 aDK~lty~aLr~a-V~~p~t~e~~----------~~~~-k~ViKp~dgCg 150 (307)
T COG1821 113 ADKRLTYKALRDA-VKQPPTREWA----------EEPK-KYVIKPADGCG 150 (307)
T ss_pred hhHHHHHHHHhhh-ccCCCccccc----------cCCc-eEEecccccCC
Confidence 3455566667766 7777654311 2233 57999964443
No 222
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.27 E-value=92 Score=31.04 Aligned_cols=62 Identities=11% Similarity=0.120 Sum_probs=45.0
Q ss_pred CcEEEEEcchhHH-HHH----HHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 296 GSIGCLVNGAGLA-MAT----MDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 296 g~iaiitngGG~g-~la----~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
..+++|-.|.-.+ ..+ .-+|++.|.. ..-+.+..+.+.+.+.+.++.+-+||+||+|+|..|
T Consensus 33 P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivqlP 99 (284)
T PRK14179 33 PGLVVILVGDNPASQVYVRNKERSALAAGFK-SEVVRLPETISQEELLDLIERYNQDPTWHGILVQLP 99 (284)
T ss_pred ceEEEEEeCCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCC
Confidence 4577776664332 222 3567777754 446677888888889999999999999999999644
No 223
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.90 E-value=92 Score=31.26 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=43.7
Q ss_pred CcEEEEEcchhH-HHHH----HHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 296 GSIGCLVNGAGL-AMAT----MDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 296 g~iaiitngGG~-g~la----~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
..+++|-.|--. ...+ .-+|++.|.. ..-+++..+.+.+.+.+.++.+-+||+|++|+|..|
T Consensus 32 P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~P 98 (297)
T PRK14167 32 PGLATVLMSDDPASETYVSMKQRDCEEVGIE-AIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMP 98 (297)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCC
Confidence 467777665322 2222 2356666754 345677888888889999999999999999999544
No 224
>PRK10949 protease 4; Provisional
Probab=34.85 E-value=80 Score=35.03 Aligned_cols=50 Identities=12% Similarity=0.272 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHcCCCccEEEEEc--cCC--CCChHHHHHHHHHHHHHcCCCCcEEEE
Q psy12143 335 AQVKEAFKIITADPKVCAIMVNI--FGG--IMRCDVIAEGIIAAAQELSLKIPIICR 387 (443)
Q Consensus 335 ~~~~~al~~ll~dp~vd~vlv~i--~~~--~~~~~~~a~~i~~~~~~~~~~kpiv~~ 387 (443)
..+.++++...+||++.+|++.+ +++ .+.+.++.++|.++. + .+|||+++
T Consensus 98 ~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk-~--sGKpVvA~ 151 (618)
T PRK10949 98 FDIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFR-D--SGKPVYAV 151 (618)
T ss_pred HHHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHH-H--hCCeEEEE
Confidence 45788899999999999999844 333 233466777776653 3 47998875
No 225
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=34.77 E-value=3.7e+02 Score=28.13 Aligned_cols=116 Identities=14% Similarity=0.066 Sum_probs=60.1
Q ss_pred CcEEEEEcchhHHHHHHHHHHHcCCCC--------CC---------eeeecCCCCHHHHH---HHHHHHHcCCCccEEEE
Q psy12143 296 GSIGCLVNGAGLAMATMDIIKLHGGEP--------AN---------FLDVGGGATAAQVK---EAFKIITADPKVCAIMV 355 (443)
Q Consensus 296 g~iaiitngGG~g~la~D~~~~~G~~~--------~N---------PvDl~g~~~~~~~~---~al~~ll~dp~vd~vlv 355 (443)
++|.|+ |+|=.+++.+-++.+.|..+ .| ++.+....+.+.|. ..++++ ...++|+|+-
T Consensus 3 kkili~-g~g~~~~~~~~aa~~lG~~vv~~~~~~d~~a~~~~~aD~~~~~~~~~~~~~y~d~~~l~~~a-~~~~id~I~p 80 (449)
T TIGR00514 3 DKILIA-NRGEIALRILRACKELGIKTVAVHSTADRDALHVLLADEAVCIGPAPSAKSYLNIPNIISAA-EITGADAIHP 80 (449)
T ss_pred ceEEEe-CCCHHHHHHHHHHHHcCCeEEEEEChhhhcccccccCCEEEEcCCCCchhchhCHHHHHHHH-HHhCCCEEEe
Confidence 367777 77888999999999999431 12 22232222333353 344444 4567998874
Q ss_pred EccCCCCChHHHHHHHHHHHHHcCCCCcEEEEe-----CCCCHHHHHHHHHHCCCCcc-----cCCCHHHHHHHH
Q psy12143 356 NIFGGIMRCDVIAEGIIAAAQELSLKIPIICRL-----QGTNVDDAKVLIASAAMKIL-----PCDNLDEAARLA 420 (443)
Q Consensus 356 ~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~-----~g~~~~~~~~~L~~~GiP~~-----~f~s~e~Av~al 420 (443)
.. +....... +.+.+++ .+.|++... ...+....++.|.+.|||+. ...+++++....
T Consensus 81 g~-g~~se~~~----~a~~~e~--~Gi~~~g~~~~~~~~~~DK~~~r~~l~~~gip~pp~~~~~~~~~~e~~~~~ 148 (449)
T TIGR00514 81 GY-GFLSENAN----FAEQCER--SGFTFIGPSAESIRLMGDKVSAIETMKKAGVPCVPGSDGLVEDEEENVRIA 148 (449)
T ss_pred CC-CccccCHH----HHHHHHH--CCCcEECcCHHHHHHhCCHHHHHHHHHHCCCCCCCCcccCcCCHHHHHHHH
Confidence 21 11111111 3334444 245543210 11123445678888998862 224566554443
No 226
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=34.53 E-value=2.5e+02 Score=27.03 Aligned_cols=94 Identities=17% Similarity=0.112 Sum_probs=51.7
Q ss_pred cCCCHHHHHHHHHHCCC--C-CCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEe--C---C
Q psy12143 34 LNVHEHVSYTLLKEGGI--P-VPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMV--D---T 105 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GI--p-v~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~--~---s 105 (443)
..-+++.+|+.+++.+- . +|-..+.++.++.. ...+.. +.|+|+. ++ . |++.++ . +
T Consensus 17 ~~~DK~~VR~yv~~~~g~~~l~pll~v~~~~~~i~--~~~Lp~-~fViK~n--hg-s----------g~~~i~~dk~~~d 80 (239)
T PF14305_consen 17 KLADKYAVREYVEEKIGEEYLPPLLGVYDNPDDID--FDSLPD-KFVIKPN--HG-S----------GSNIIVRDKSKLD 80 (239)
T ss_pred ecchHHHHHHHHHHhCCCceECceeecCCChhhhh--hhcCCC-CEEEEEe--cC-C----------CcEEEEeCCcccC
Confidence 34678899999999862 2 23334556666653 235554 8999996 32 2 344443 2 3
Q ss_pred HHHHHHHHHHHhhchhhh-hhcCCCCcccCeEEEEeeeC
Q psy12143 106 PEEAEEVAGKMIGDYLIT-KQTGEKGRICNAVMVTERKY 143 (443)
Q Consensus 106 ~ee~~~a~~~l~~~~~~~-~~~~~~g~~~~~vlVE~~v~ 143 (443)
.+++..-+.+.+...... .+.-.....-..++||+++.
T Consensus 81 ~~~~~~~~~~wl~~~~~~~~~E~~Y~~i~prIivE~~l~ 119 (239)
T PF14305_consen 81 IEEAKKKLNRWLKKDYYYQSREWHYKNIKPRIIVEELLE 119 (239)
T ss_pred HHHHHHHHHHHhhhccccccccccCcCCCceEEEEeccc
Confidence 455555555555432110 11111122235899999995
No 227
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=34.45 E-value=96 Score=31.77 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=34.8
Q ss_pred HHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q psy12143 314 IIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFG 359 (443)
Q Consensus 314 ~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~ 359 (443)
+|++.|.. .--+++..+.+.+.+.+.++.+-+||+||+|+|..|.
T Consensus 110 ~a~~~GI~-~~~~~l~~~~te~ell~~I~~lN~D~~V~GIlVQlPL 154 (345)
T PLN02897 110 ACEETGIK-SLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPL 154 (345)
T ss_pred HHHhcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCC
Confidence 56666644 2345677788888899999999999999999996553
No 228
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.24 E-value=99 Score=30.81 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=44.5
Q ss_pred CCcEEEEEcchhH-HHHH----HHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q psy12143 295 DGSIGCLVNGAGL-AMAT----MDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFG 359 (443)
Q Consensus 295 ~g~iaiitngGG~-g~la----~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~ 359 (443)
...+++|-.|-=. ...+ .-.|++.|.. ..-+++..+.+.+.+.+.++.+-+||+||+|++..|.
T Consensus 32 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIlvqlPl 100 (284)
T PRK14193 32 TPGLGTVLVGDDPGSQAYVRGKHRDCAEVGIT-SIRRDLPADATQEELNAVIDELNADPACTGYIVQLPL 100 (284)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCC
Confidence 3467766555322 2222 2356777744 3456778888888899999999999999999996553
No 229
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=34.23 E-value=3.4e+02 Score=26.21 Aligned_cols=100 Identities=20% Similarity=0.113 Sum_probs=49.5
Q ss_pred HHHHHcCCCCCCeeee-cCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCC
Q psy12143 313 DIIKLHGGEPANFLDV-GGGATAAQ-VKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQG 390 (443)
Q Consensus 313 D~~~~~G~~~~NPvDl-~g~~~~~~-~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g 390 (443)
+++..+|....+.+++ .+..+.+. +..+-+.+.++|++++|++. .+.+|.++++++++.+....+.+...+
T Consensus 147 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~D~~A~g~~~al~~~g~~~dv~vvG~D 219 (298)
T cd06302 147 AYQKEKYYPMLELVDRQYGDDDADKSYQTAQELLKAYPDLKGIIGP-------TSVGIPGAARAVEEAGLKGKVAVTGLG 219 (298)
T ss_pred HHHhhcCCCCeEEeCcccCCCCHHHHHHHHHHHHHhCCCceEEEEC-------CCcchhHHHHHHHhcCCCCCEEEEEeC
Confidence 4555555221222222 34444444 44444445567888988852 245677888888886543334322222
Q ss_pred CCHHHHHHHHHHCCCCcccCCCHHHHHHHH
Q psy12143 391 TNVDDAKVLIASAAMKILPCDNLDEAARLA 420 (443)
Q Consensus 391 ~~~~~~~~~L~~~GiP~~~f~s~e~Av~al 420 (443)
+.......+....+...+..++++-.+..
T Consensus 220 -~~~~~~~~~~~g~i~~tv~~~~~~~g~~a 248 (298)
T cd06302 220 -LPNQMAPYVKSGAVKEFALWNPADLGYAA 248 (298)
T ss_pred -CCHHHHHHHhCCeeEEEEecCHHHHHHHH
Confidence 22344455555334433344565544433
No 230
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.20 E-value=97 Score=30.84 Aligned_cols=63 Identities=10% Similarity=0.149 Sum_probs=42.6
Q ss_pred CCcEEEEEcchhH-HHHH----HHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 295 DGSIGCLVNGAGL-AMAT----MDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 295 ~g~iaiitngGG~-g~la----~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
...+++|-.|.=. ...+ .-+|++.|.. .--+.+..+.+.+.+.+.++.+-+||+||+|++..|
T Consensus 31 ~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~P 98 (281)
T PRK14183 31 VPGLAVILVGDDPASHTYVKMKAKACDRVGIY-SITHEMPSTISQKEILETIAMMNNNPNIDGILVQLP 98 (281)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCccCeEEEeCC
Confidence 3457666655322 2222 2356666744 234567778888889999999999999999999654
No 231
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=33.92 E-value=1.1e+02 Score=30.44 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=37.2
Q ss_pred HHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q psy12143 314 IIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFG 359 (443)
Q Consensus 314 ~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~ 359 (443)
+|++.|.. ..-.|+..+.+.+.+...++-+.+||++++|+|-.|.
T Consensus 54 ~~~~iGi~-~~~~~l~~~~t~~eLl~~I~~lN~D~~v~GIlVQlPL 98 (283)
T COG0190 54 AAEEIGIA-SELYDLPEDITEEELLALIDELNADPEVDGILVQLPL 98 (283)
T ss_pred HHHHcCCe-eEEEeCCCcCCHHHHHHHHHHhcCCCCCcEEEEeCCC
Confidence 56666654 5778888899988999999999999999999996553
No 232
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.76 E-value=99 Score=30.89 Aligned_cols=62 Identities=8% Similarity=0.180 Sum_probs=42.5
Q ss_pred CcEEEEEcchhH-HH----HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 296 GSIGCLVNGAGL-AM----ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 296 g~iaiitngGG~-g~----la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
..+++|-.|--. .. .-.-.|++.|.. ..-+.+..+.+.+.+.+.++.+-+||+||+|++..|
T Consensus 33 P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvqlP 99 (288)
T PRK14171 33 PKLAIVLVGDNPASIIYVKNKIKNAHKIGID-TLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLP 99 (288)
T ss_pred CeEEEEEeCCCccHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCC
Confidence 356666555221 12 223466777754 335567778888889999999999999999999655
No 233
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=33.76 E-value=4e+02 Score=24.94 Aligned_cols=89 Identities=16% Similarity=0.125 Sum_probs=47.4
Q ss_pred cCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHH-HHHHHCCCC
Q psy12143 329 GGGATAAQ-VKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAK-VLIASAAMK 406 (443)
Q Consensus 329 ~g~~~~~~-~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~-~~L~~~GiP 406 (443)
.++.+.+. +..+-+.+.++|++++|++. .+. |.++++++++.+.+.|.++.+... .... ..+...++.
T Consensus 164 ~~~~~~~~~~~~~~~~l~~~~~~~~i~~~-------~d~-A~g~~~al~~~g~~~p~v~g~d~~--~~~~~~~~~~~~lt 233 (272)
T cd06300 164 YGDWDQAVAQKAVADFLASNPDVDGIWTQ-------GGD-AVGAVQAFEQAGRDIPPVTGEDEN--GFLRWRLWKDKGLK 233 (272)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcCEEEec-------CCC-cHHHHHHHHHcCCCCcEEEeeCCc--HHHHHHhhhccCce
Confidence 34445444 44444444567889988862 134 678888888876666654443332 1111 134445566
Q ss_pred cccC-CCHHHHHHHHHHHHHHH
Q psy12143 407 ILPC-DNLDEAARLAVKLSSIV 427 (443)
Q Consensus 407 ~~~f-~s~e~Av~al~~l~~~~ 427 (443)
.+.+ +..+-+-.++..+.+++
T Consensus 234 ti~~~~~~~~g~~a~~~l~~~~ 255 (272)
T cd06300 234 GIAISNPPGQSAAALRAAVQAL 255 (272)
T ss_pred eEEEeCChHHHHHHHHHHHHHH
Confidence 5433 44444444444444444
No 234
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.73 E-value=1e+02 Score=30.66 Aligned_cols=63 Identities=19% Similarity=0.240 Sum_probs=43.4
Q ss_pred CCcEEEEEcchhHH-H----HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 295 DGSIGCLVNGAGLA-M----ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 295 ~g~iaiitngGG~g-~----la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
...+++|-.|-=.+ . .-.-+|++.|.. .--+.+..+.+.+.+.+.++.+-+||+||+|+|..|
T Consensus 26 ~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlP 93 (279)
T PRK14178 26 YPRLATVIVGDDPASQMYVRMKHRACERVGIG-SVGIELPGDATTRTVLERIRRLNEDPDINGILVQLP 93 (279)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCC
Confidence 34566665553222 2 223467777754 334567778888889999999999999999999655
No 235
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=33.48 E-value=1.4e+02 Score=29.39 Aligned_cols=61 Identities=18% Similarity=0.086 Sum_probs=35.9
Q ss_pred EEEEEcchhHHH-----HHHHHHHHcCCCCCCeeee-----cCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 298 IGCLVNGAGLAM-----ATMDIIKLHGGEPANFLDV-----GGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 298 iaiitngGG~g~-----la~D~~~~~G~~~~NPvDl-----~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
|+||+.|++..- .+.+.++..|.++..+=-+ .-..+.+.=.+-|...+.||++|+|+....
T Consensus 1 I~iiapSs~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~d~~i~aI~~~rG 71 (282)
T cd07025 1 IGIVAPSSPIDEEERLERAIARLESLGLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIKAIWCARG 71 (282)
T ss_pred CEEEeCCCCCCcHHHHHHHHHHHHhCCCEEEeccchhhhcCccCCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 578888887644 3456677777543111101 113344433444677779999999997443
No 236
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.47 E-value=98 Score=31.13 Aligned_cols=115 Identities=11% Similarity=0.062 Sum_probs=68.0
Q ss_pred CcEEEEEcchhHH-H----HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccC--CCCC-----
Q psy12143 296 GSIGCLVNGAGLA-M----ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFG--GIMR----- 363 (443)
Q Consensus 296 g~iaiitngGG~g-~----la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~--~~~~----- 363 (443)
..+++|-.|.=.+ . .-.-+|++.|.. .--+.+..+.+.+.+.+.++.+-+||+||+|+|..|. ++..
T Consensus 34 P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~ 112 (301)
T PRK14194 34 PALAVILVGNDPASQVYVRNKILRAEEAGIR-SLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQ 112 (301)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHh
Confidence 4566665553222 2 223467777744 2334567788888899999999999999999995442 1110
Q ss_pred --------------------------hHHHHHHHHHHHHHcCC---CCcEEEEeCC-CCHHHHHHHHHHCCCCcccCC
Q psy12143 364 --------------------------CDVIAEGIIAAAQELSL---KIPIICRLQG-TNVDDAKVLIASAAMKILPCD 411 (443)
Q Consensus 364 --------------------------~~~~a~~i~~~~~~~~~---~kpiv~~~~g-~~~~~~~~~L~~~GiP~~~f~ 411 (443)
..-.+.++++.++.++. .|-|++.-.| ..-..-...|.+.|..++++.
T Consensus 113 ~I~p~KDVDGl~~~N~g~l~~~~~~~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~ 190 (301)
T PRK14194 113 AINPLKDVDGFHSENVGGLSQGRDVLTPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVH 190 (301)
T ss_pred ccCchhccCccChhhhhHHhcCCCCCCCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEC
Confidence 00124667777766432 4555543223 322233456777888876664
No 237
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=33.34 E-value=1.8e+02 Score=26.64 Aligned_cols=57 Identities=28% Similarity=0.366 Sum_probs=33.5
Q ss_pred eecCCCCHH---HHHHHHHHHHcCCCccEEEE--EccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeC
Q psy12143 327 DVGGGATAA---QVKEAFKIITADPKVCAIMV--NIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQ 389 (443)
Q Consensus 327 Dl~g~~~~~---~~~~al~~ll~dp~vd~vlv--~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~ 389 (443)
.+.|..++. -+.++++...+| +++.|++ |.+||.. .-...|.+..+. .++||+++..
T Consensus 5 ~i~G~I~~~~~~~l~~~l~~A~~~-~~~~i~l~inSPGG~v---~~~~~I~~~i~~--~~~pvv~~v~ 66 (172)
T cd07015 5 QIKGQITSYTYDQFDRYITIAEQD-NAEAIIIELDTPGGRA---DAAGNIVQRIQQ--SKIPVIIYVY 66 (172)
T ss_pred EEeeEECHhHHHHHHHHHHHHhcC-CCCeEEEEEECCCCCH---HHHHHHHHHHHh--cCcCEEEEEe
Confidence 344444433 357777776554 5777766 7777732 123455555555 5799987654
No 238
>cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like. Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.
Probab=33.13 E-value=5.8e+02 Score=26.56 Aligned_cols=84 Identities=18% Similarity=0.192 Sum_probs=48.1
Q ss_pred CCcEEEEEcc---hhHHHHHHHHHHHcCCCCC--CeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHH
Q psy12143 295 DGSIGCLVNG---AGLAMATMDIIKLHGGEPA--NFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAE 369 (443)
Q Consensus 295 ~g~iaiitng---GG~g~la~D~~~~~G~~~~--NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~ 369 (443)
.||-.|+-.| -..+....+++.+.|.... |.+ .|+.... ....+.++++|++|.|.. +|+ ....+
T Consensus 125 aGN~VVlKps~~~p~~~~~l~~~~~~aGlP~gv~~~v--~g~~~~~--~~~~~~l~~~~~v~~v~f--tGs----~~~g~ 194 (432)
T cd07105 125 AGNTVVLKASELSPRTHWLIGRVFHEAGLPKGVLNVV--THSPEDA--PEVVEALIAHPAVRKVNF--TGS----TRVGR 194 (432)
T ss_pred cCCEEEEECCccChHHHHHHHHHHHHcCcCCCcEEEE--eCCCCch--HHHHHHHhcCCCCCEEEE--ECC----HHHHH
Confidence 4555555333 2356678888888886543 333 3433211 235677789999998773 343 34455
Q ss_pred HHHHHHHHcCCCCcEEEEeCC
Q psy12143 370 GIIAAAQELSLKIPIICRLQG 390 (443)
Q Consensus 370 ~i~~~~~~~~~~kpiv~~~~g 390 (443)
.|.+.+.+ +-||++.-.+|
T Consensus 195 ~i~~~aa~--~~~~~~lElgG 213 (432)
T cd07105 195 IIAETAAK--HLKPVLLELGG 213 (432)
T ss_pred HHHHHHHh--cCCeEEEeCCC
Confidence 66655554 34666554444
No 239
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=32.69 E-value=3.4e+02 Score=23.79 Aligned_cols=100 Identities=14% Similarity=0.094 Sum_probs=57.9
Q ss_pred HHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCC
Q psy12143 312 MDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGT 391 (443)
Q Consensus 312 ~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~ 391 (443)
.-+++.+|.+ =+|++-+.+++.+.++.. ..++|+|.++...+. .......+++.+++.+...+. +..+|.
T Consensus 22 ~~~l~~~Gfe---Vi~LG~~v~~e~~v~aa~----~~~adiVglS~l~~~--~~~~~~~~~~~l~~~gl~~~~-vivGG~ 91 (134)
T TIGR01501 22 DHAFTNAGFN---VVNLGVLSPQEEFIKAAI----ETKADAILVSSLYGH--GEIDCKGLRQKCDEAGLEGIL-LYVGGN 91 (134)
T ss_pred HHHHHHCCCE---EEECCCCCCHHHHHHHHH----HcCCCEEEEeccccc--CHHHHHHHHHHHHHCCCCCCE-EEecCC
Confidence 3467777744 478999999888765552 235677777544332 222345566666665443333 234442
Q ss_pred ---CHHH---HHHHHHHCCCCcccCC---CHHHHHHHHHH
Q psy12143 392 ---NVDD---AKVLIASAAMKILPCD---NLDEAARLAVK 422 (443)
Q Consensus 392 ---~~~~---~~~~L~~~GiP~~~f~---s~e~Av~al~~ 422 (443)
..++ -.+.|++.|+-- +|. ++++.+..+..
T Consensus 92 ~vi~~~d~~~~~~~l~~~Gv~~-vF~pgt~~~~iv~~l~~ 130 (134)
T TIGR01501 92 LVVGKQDFPDVEKRFKEMGFDR-VFAPGTPPEVVIADLKK 130 (134)
T ss_pred cCcChhhhHHHHHHHHHcCCCE-EECcCCCHHHHHHHHHH
Confidence 1111 245799999752 376 67776666544
No 240
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.61 E-value=1e+02 Score=30.73 Aligned_cols=63 Identities=13% Similarity=0.176 Sum_probs=43.3
Q ss_pred CCcEEEEEcchhH-HHH----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 295 DGSIGCLVNGAGL-AMA----TMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 295 ~g~iaiitngGG~-g~l----a~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
...+++|-.|-=. ... -.-+|++.|.. .--+++..+.+.+.+.+.++.+-+||+|++|+|..|
T Consensus 26 ~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~t~~el~~~I~~lN~d~~V~GIlvqlP 93 (287)
T PRK14181 26 APGLAVVLIGNDPASEVYVGMKVKKATDLGMV-SKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLP 93 (287)
T ss_pred CCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCC
Confidence 3456666555322 222 23466777754 345677788888889999999999999999999544
No 241
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=32.49 E-value=2.3e+02 Score=26.40 Aligned_cols=81 Identities=23% Similarity=0.261 Sum_probs=45.1
Q ss_pred CcEEEEEcchhHH------HHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHH
Q psy12143 296 GSIGCLVNGAGLA------MATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIIT-ADPKVCAIMVNIFGGIMRCDVIA 368 (443)
Q Consensus 296 g~iaiitngGG~g------~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll-~dp~vd~vlv~i~~~~~~~~~~a 368 (443)
++|++++...+.. --..+.+..+|.+........+..+.+...+.++.++ +.|.+++|++. .+.+|
T Consensus 118 ~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a 190 (269)
T cd06275 118 RRIGCITGPLEKAPAQQRLAGFRRAMAEAGLPVNPGWIVEGDFECEGGYEAMQRLLAQPKRPTAVFCG-------NDLMA 190 (269)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCHHHhccCCCChHHHHHHHHHHHcCCCCCcEEEEC-------ChHHH
Confidence 4677775432211 1124566666654332223345555444444555555 44678998862 36778
Q ss_pred HHHHHHHHHcCCCCc
Q psy12143 369 EGIIAAAQELSLKIP 383 (443)
Q Consensus 369 ~~i~~~~~~~~~~kp 383 (443)
.++.+++++.+...|
T Consensus 191 ~g~~~~l~~~g~~vp 205 (269)
T cd06275 191 MGALCAAQEAGLRVP 205 (269)
T ss_pred HHHHHHHHHcCCCCC
Confidence 888898888654433
No 242
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.39 E-value=1.1e+02 Score=30.37 Aligned_cols=63 Identities=17% Similarity=0.128 Sum_probs=44.1
Q ss_pred CCcEEEEEcchhHH-HH----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 295 DGSIGCLVNGAGLA-MA----TMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 295 ~g~iaiitngGG~g-~l----a~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
...+++|-.|-=.+ .. -.-+|++.|.. ..-+.+..+.+.+.+.+.++.+-+||+||+|+|..|
T Consensus 30 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIivqlP 97 (282)
T PRK14182 30 QTGLTVVRVGDDPASAIYVRGKRKDCEEVGIT-SVEHHLPATTTQAELLALIARLNADPAVHGILVQLP 97 (282)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 34577776653222 22 23467777754 345567778888889999999999999999999654
No 243
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.28 E-value=1.1e+02 Score=30.52 Aligned_cols=62 Identities=13% Similarity=0.186 Sum_probs=42.9
Q ss_pred CcEEEEEcchhHH-HHH----HHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 296 GSIGCLVNGAGLA-MAT----MDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 296 g~iaiitngGG~g-~la----~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
..+++|-.|.-.+ ..+ .-.|++.|.. .--+.+..+.+.+.+.+.++.+-+|++||+|++..|
T Consensus 34 P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvqlP 100 (284)
T PRK14177 34 PKLATILVGNNPASETYVSMKVKACHKVGMG-SEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHP 100 (284)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCC
Confidence 3577776654322 222 3467777744 334456777888889999999999999999999655
No 244
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=32.14 E-value=3.6e+02 Score=24.06 Aligned_cols=85 Identities=14% Similarity=0.080 Sum_probs=50.2
Q ss_pred HHHHHHHcCCCCCCeeeecCCCC-HHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeC
Q psy12143 311 TMDIIKLHGGEPANFLDVGGGAT-AAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQ 389 (443)
Q Consensus 311 a~D~~~~~G~~~~NPvDl~g~~~-~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~ 389 (443)
.+-++.+.|..+ +.+|... ++.+ ++... +.++|.|.+++..+. -...+..+++++++.+. ..|.+..+
T Consensus 32 ia~~l~d~GfeV----i~~g~~~tp~e~---v~aA~-~~dv~vIgvSsl~g~--h~~l~~~lve~lre~G~-~~i~v~~G 100 (143)
T COG2185 32 IARALADAGFEV----INLGLFQTPEEA---VRAAV-EEDVDVIGVSSLDGG--HLTLVPGLVEALREAGV-EDILVVVG 100 (143)
T ss_pred HHHHHHhCCceE----EecCCcCCHHHH---HHHHH-hcCCCEEEEEeccch--HHHHHHHHHHHHHHhCC-cceEEeec
Confidence 345677777664 4554333 3332 22222 345788888655432 23556778888888642 44555666
Q ss_pred CCCHHHHHHHHHHCCCC
Q psy12143 390 GTNVDDAKVLIASAAMK 406 (443)
Q Consensus 390 g~~~~~~~~~L~~~GiP 406 (443)
|.-..+..+.|++.|+-
T Consensus 101 Gvip~~d~~~l~~~G~~ 117 (143)
T COG2185 101 GVIPPGDYQELKEMGVD 117 (143)
T ss_pred CccCchhHHHHHHhCcc
Confidence 66555567889999974
No 245
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=32.03 E-value=4.5e+02 Score=24.94 Aligned_cols=86 Identities=19% Similarity=0.109 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHHH-HHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcc
Q psy12143 330 GGATAAQVKEAFKI-ITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKIL 408 (443)
Q Consensus 330 g~~~~~~~~~al~~-ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~ 408 (443)
++.+.+.-.++++. +...|.+++|++. .+.+|.++.+++++++.++-|.+...+ +.+++...+.+.-+...
T Consensus 170 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------nd~~A~g~l~al~~~G~~~dv~vvg~d-~~~~~~~~~~~g~~~~t 241 (280)
T cd06303 170 TDATRQKAYQATSDILSNNPDVDFIYAC-------STDIALGASDALKELGREDDILINGWG-GGSAELDAIQQGELDVT 241 (280)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEC-------CcHHHHHHHHHHHHcCCCCCcEEEecC-CCHHHHHHHHcCCceEE
Confidence 34444443334444 4456788998851 367788999999886543334332222 23456666665433233
Q ss_pred cCCCHHHHHHHHHHH
Q psy12143 409 PCDNLDEAARLAVKL 423 (443)
Q Consensus 409 ~f~s~e~Av~al~~l 423 (443)
+..++++..+.++++
T Consensus 242 v~~~~~~~g~~~~~~ 256 (280)
T cd06303 242 VMRMNDDTGVAMAEA 256 (280)
T ss_pred EecCchHhHHHHHHH
Confidence 355666665555554
No 246
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=31.61 E-value=1.5e+02 Score=29.13 Aligned_cols=65 Identities=23% Similarity=0.174 Sum_probs=32.6
Q ss_pred cEEEEEccCC-CCC-hHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHC-CCCcccCCCHHHHHHHHH
Q psy12143 351 CAIMVNIFGG-IMR-CDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASA-AMKILPCDNLDEAARLAV 421 (443)
Q Consensus 351 d~vlv~i~~~-~~~-~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~-GiP~~~f~s~e~Av~al~ 421 (443)
++||+..||+ ... .....+.|.+.+++.=++.+| ++.-+ +.-.++.|.+. |+.+ ++|.+|.+.|.
T Consensus 1 KAIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V--~~AfT-S~~I~~kl~~~~g~~i---~~~~eaL~~L~ 68 (262)
T PF06180_consen 1 KAILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDV--RRAFT-SRIIRKKLAERDGIKI---DSPEEALAKLA 68 (262)
T ss_dssp EEEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEE--EEEES--HHHHHHHHHCHT--------HHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcE--EEEch-HHHHHHHHHhcCCCCc---CCHHHHHHHHH
Confidence 3677766665 222 233556666666664245555 33333 23456778887 7665 88888887764
No 247
>KOG1251|consensus
Probab=31.21 E-value=2.7e+02 Score=27.45 Aligned_cols=17 Identities=12% Similarity=0.008 Sum_probs=11.6
Q ss_pred EeCCHHHHHHHHHHHhh
Q psy12143 102 MVDTPEEAEEVAGKMIG 118 (443)
Q Consensus 102 l~~s~ee~~~a~~~l~~ 118 (443)
+..+.+++++|.+++..
T Consensus 5 ~~~t~~dv~~A~~rik~ 21 (323)
T KOG1251|consen 5 YKITYEDVRAAHQRIKP 21 (323)
T ss_pred ecCCHHHHHHHHHHHHh
Confidence 34577788888777643
No 248
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.12 E-value=1.1e+02 Score=30.27 Aligned_cols=62 Identities=11% Similarity=0.169 Sum_probs=42.8
Q ss_pred CcEEEEEcchhH-HHHH----HHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 296 GSIGCLVNGAGL-AMAT----MDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 296 g~iaiitngGG~-g~la----~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
..+++|-.|--. ...+ .-+|++.|.. .--+.+..+.+.+.+.+.++.+-+|++||+|++..|
T Consensus 33 P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlvqlP 99 (278)
T PRK14172 33 PKIASILVGNDGGSIYYMNNQEKVANSLGID-FKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLP 99 (278)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCC
Confidence 356666555322 2222 3466777754 344567778888889999999999999999999654
No 249
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=30.55 E-value=1.3e+02 Score=25.27 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=37.5
Q ss_pred HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCC
Q psy12143 337 VKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQG 390 (443)
Q Consensus 337 ~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g 390 (443)
+..++.++..++++.+|++..- ........++++..++++.+.||++....
T Consensus 26 ~dd~~~~i~~~~~i~avvi~~d---~~~~~~~~~ll~~i~~~~~~iPVFl~~~~ 76 (115)
T PF03709_consen 26 TDDALAIIESFTDIAAVVISWD---GEEEDEAQELLDKIRERNFGIPVFLLAER 76 (115)
T ss_dssp HHHHHHHHHCTTTEEEEEEECH---HHHHHHHHHHHHHHHHHSTT-EEEEEESC
T ss_pred hHHHHHHHHhCCCeeEEEEEcc---cccchhHHHHHHHHHHhCCCCCEEEEecC
Confidence 5678888999999999998432 11236677888888888889999876553
No 250
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.07 E-value=1.3e+02 Score=29.92 Aligned_cols=64 Identities=16% Similarity=0.123 Sum_probs=43.6
Q ss_pred CCcEEEEEcchh-HHHHH----HHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q psy12143 295 DGSIGCLVNGAG-LAMAT----MDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFG 359 (443)
Q Consensus 295 ~g~iaiitngGG-~g~la----~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~ 359 (443)
...+++|-.|-= ....+ .-.|++.|.. .--+.+..+.+.+.+.+.++.+-+|++||+|+|..|.
T Consensus 29 ~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL 97 (287)
T PRK14173 29 VPHLRVVRLGEDPASVSYVRLKDRQAKALGLR-SQVEVLPESTSQEELLELIARLNADPEVDGILVQLPL 97 (287)
T ss_pred CCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCC
Confidence 345766655522 22222 3467777754 3345667788888899999999999999999996553
No 251
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=29.64 E-value=4.2e+02 Score=23.81 Aligned_cols=123 Identities=17% Similarity=0.175 Sum_probs=60.7
Q ss_pred cEEEEEcch---hHHHHHHHHHHHcCCCCCCeeeecC---CCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHH
Q psy12143 297 SIGCLVNGA---GLAMATMDIIKLHGGEPANFLDVGG---GATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEG 370 (443)
Q Consensus 297 ~iaiitngG---G~g~la~D~~~~~G~~~~NPvDl~g---~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~ 370 (443)
+|+|++.|- -..--+.+.|+.+| =|.|+.= -=+++.+.+.++.+.+ .+.+.++. +.|...- + -+
T Consensus 2 ~V~Ii~gs~SD~~~~~~a~~~L~~~g----i~~~~~V~saHR~p~~l~~~~~~~~~-~~~~viIa-~AG~~a~---L-pg 71 (150)
T PF00731_consen 2 KVAIIMGSTSDLPIAEEAAKTLEEFG----IPYEVRVASAHRTPERLLEFVKEYEA-RGADVIIA-VAGMSAA---L-PG 71 (150)
T ss_dssp EEEEEESSGGGHHHHHHHHHHHHHTT-----EEEEEE--TTTSHHHHHHHHHHTTT-TTESEEEE-EEESS-----H-HH
T ss_pred eEEEEeCCHHHHHHHHHHHHHHHHcC----CCEEEEEEeccCCHHHHHHHHHHhcc-CCCEEEEE-ECCCccc---c-hh
Confidence 577887766 34455677788877 3445532 2245556666665543 56675554 3332111 1 23
Q ss_pred HHHHHHHcCCCCcEEEEe--CCC-CHHHHHHHHHH--CCCCcccCC--CHHHHHHHHHHHHHHHhHHHhc
Q psy12143 371 IIAAAQELSLKIPIICRL--QGT-NVDDAKVLIAS--AAMKILPCD--NLDEAARLAVKLSSIVGLARAA 433 (443)
Q Consensus 371 i~~~~~~~~~~kpiv~~~--~g~-~~~~~~~~L~~--~GiP~~~f~--s~e~Av~al~~l~~~~~~~~~~ 433 (443)
++... ..+||+.+. .+. .-.+++--+-+ .|+|+.... +...|+-...++..+.+...+.
T Consensus 72 vva~~----t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~~d~~l~~ 137 (150)
T PF00731_consen 72 VVASL----TTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILALKDPELRE 137 (150)
T ss_dssp HHHHH----SSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHTT-HHHHH
T ss_pred hheec----cCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhcCCHHHHH
Confidence 33322 579999764 232 22233222222 488874433 6667766666666665444443
No 252
>PRK11778 putative inner membrane peptidase; Provisional
Probab=29.37 E-value=1.3e+02 Score=30.55 Aligned_cols=37 Identities=14% Similarity=0.288 Sum_probs=22.0
Q ss_pred cEEEE--EccCCC-CChHHHHHHHHHHHHHcCCCCcEEEEeCC
Q psy12143 351 CAIMV--NIFGGI-MRCDVIAEGIIAAAQELSLKIPIICRLQG 390 (443)
Q Consensus 351 d~vlv--~i~~~~-~~~~~~a~~i~~~~~~~~~~kpiv~~~~g 390 (443)
++|++ +.+||. ..++..+..|.+. ++ .+|||+++..+
T Consensus 124 ~aVvLridSpGG~v~~s~~a~~~l~~l-r~--~~kpVva~v~~ 163 (330)
T PRK11778 124 DEVLLRLESPGGVVHGYGLAASQLQRL-RD--AGIPLTVAVDK 163 (330)
T ss_pred CeEEEEEeCCCCchhHHHHHHHHHHHH-Hh--cCCCEEEEECC
Confidence 67776 667763 3344555555443 44 46899876543
No 253
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=28.75 E-value=1.2e+02 Score=30.51 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=42.0
Q ss_pred CcEEEEEcchh-HHHHHH----HHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 296 GSIGCLVNGAG-LAMATM----DIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 296 g~iaiitngGG-~g~la~----D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
..+++|-.|.= ....+. -.|++.|.. .--+++..+.+.+.+.+.++.+-+||+|++|+|..|
T Consensus 40 P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvq~P 106 (299)
T PLN02516 40 PGLAVVIVGSRKDSQTYVNMKRKACAEVGIK-SFDVDLPENISEAELISKVHELNANPDVHGILVQLP 106 (299)
T ss_pred CeEEEEEECCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecC
Confidence 45666655532 222222 346666743 333567778888889999999999999999999655
No 254
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=28.63 E-value=3.8e+02 Score=25.01 Aligned_cols=112 Identities=20% Similarity=0.169 Sum_probs=56.1
Q ss_pred CCHHHHHHhcCCCeEeecCCcEEEEEcchhHHHHHHHHHHHcC--C----------------------CCCCeeeecCCC
Q psy12143 277 EDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHG--G----------------------EPANFLDVGGGA 332 (443)
Q Consensus 277 ~~~~e~~a~~~~l~~~~~~g~iaiitngGG~g~la~D~~~~~G--~----------------------~~~NPvDl~g~~ 332 (443)
.|-.|+.+. .++...+..+=-++..|.|.|.++.+.+ ..| + ...|-.-+-|++
T Consensus 17 ~TK~EIRal--~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A 93 (187)
T COG2242 17 MTKEEIRAL--TLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA 93 (187)
T ss_pred CcHHHHHHH--HHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc
Confidence 344566553 2233334222234455666777777777 444 1 134555555555
Q ss_pred CHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEE-eCCCCHHHHHHHHHHCCC
Q psy12143 333 TAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICR-LQGTNVDDAKVLIASAAM 405 (443)
Q Consensus 333 ~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~-~~g~~~~~~~~~L~~~Gi 405 (443)
+ +.+..-|..|++|+ .|+ .+-+.+.+...+.++ +.--+|+- ..-.+...+.+.|++.|.
T Consensus 94 p--------~~L~~~~~~daiFI--GGg-~~i~~ile~~~~~l~---~ggrlV~naitlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 94 P--------EALPDLPSPDAIFI--GGG-GNIEEILEAAWERLK---PGGRLVANAITLETLAKALEALEQLGG 153 (187)
T ss_pred h--------HhhcCCCCCCEEEE--CCC-CCHHHHHHHHHHHcC---cCCeEEEEeecHHHHHHHHHHHHHcCC
Confidence 4 23334457899986 333 333444444333322 22234442 223345556778888775
No 255
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=28.50 E-value=2.5e+02 Score=29.07 Aligned_cols=77 Identities=19% Similarity=0.151 Sum_probs=45.7
Q ss_pred cEEEEEcchhHHHH-HHHHHHHcCCC--------------------CCCeeee-----cCCCCHHHHHHHHHHHHcCCCc
Q psy12143 297 SIGCLVNGAGLAMA-TMDIIKLHGGE--------------------PANFLDV-----GGGATAAQVKEAFKIITADPKV 350 (443)
Q Consensus 297 ~iaiitngGG~g~l-a~D~~~~~G~~--------------------~~NPvDl-----~g~~~~~~~~~al~~ll~dp~v 350 (443)
+=.++|+|+..++. ++.++..-|-. ...++++ ....+.+.+.+++ . +++
T Consensus 90 ~eiivt~Ga~~al~~~~~a~~~pGDeVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i----~-~kt 164 (393)
T COG0436 90 EEIIVTAGAKEALFLAFLALLNPGDEVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAI----T-PKT 164 (393)
T ss_pred CeEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhc----C-ccc
Confidence 44678888888776 66777776611 1123332 2233333333333 3 489
Q ss_pred cEEEEEccCC---CCChHHHHHHHHHHHHHc
Q psy12143 351 CAIMVNIFGG---IMRCDVIAEGIIAAAQEL 378 (443)
Q Consensus 351 d~vlv~i~~~---~~~~~~~a~~i~~~~~~~ 378 (443)
++|++|.|.. ..-..+..+.|++.++++
T Consensus 165 k~i~ln~P~NPTGav~~~~~l~~i~~~a~~~ 195 (393)
T COG0436 165 KAIILNSPNNPTGAVYSKEELKAIVELAREH 195 (393)
T ss_pred eEEEEeCCCCCcCcCCCHHHHHHHHHHHHHc
Confidence 9999987643 233456678888888874
No 256
>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like. Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.
Probab=27.80 E-value=5.7e+02 Score=27.01 Aligned_cols=70 Identities=17% Similarity=0.271 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHcCCCCCCeeee-cCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEE
Q psy12143 307 LAMATMDIIKLHGGEPANFLDV-GGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPII 385 (443)
Q Consensus 307 ~g~la~D~~~~~G~~~~NPvDl-~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv 385 (443)
.+....+.+.++|..+ +-+-+ .|.. ...-+.+.++|.+|.|.. +|+ ....+.|.+.+.+ ..||++
T Consensus 177 ~~~~l~~~l~~aGlP~-gvv~~v~g~~-----~~~~~~L~~~~~vd~V~f--tGs----~~~g~~i~~~aa~--~~~~~~ 242 (478)
T cd07131 177 CALKLVELFAEAGLPP-GVVNVVHGRG-----EEVGEALVEHPDVDVVSF--TGS----TEVGERIGETCAR--PNKRVA 242 (478)
T ss_pred HHHHHHHHHHhcCcCC-CcEEEEecCc-----hHHHHHHhcCCCCCEEEE--ECc----HHHHHHHHHHHhh--cCCcEE
Confidence 4556677788777543 22222 2322 123455778999998773 443 3455666665554 346655
Q ss_pred EEeCC
Q psy12143 386 CRLQG 390 (443)
Q Consensus 386 ~~~~g 390 (443)
.-.+|
T Consensus 243 lelgG 247 (478)
T cd07131 243 LEMGG 247 (478)
T ss_pred EECCC
Confidence 44443
No 257
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=27.79 E-value=4.8e+02 Score=26.20 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=44.7
Q ss_pred CCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcc
Q psy12143 330 GGATAAQ-VKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKIL 408 (443)
Q Consensus 330 g~~~~~~-~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~ 408 (443)
++.+.+. +..+-+++.++|++|+|+.+ . +..+.+..+++++.+..+..|+.+. ...+..+.+++.-+...
T Consensus 189 ~~~d~~~a~~~~~~lL~~~pdi~aI~~~--~-----~~~~~Ga~~Al~~~g~~~v~VvG~D--~~~~~~~~i~~G~i~~~ 259 (336)
T PRK15408 189 GYNDATKSLQTAEGILKAYPDLDAIIAP--D-----ANALPAAAQAAENLKRDKVAIVGFS--TPNVMRPYVKRGTVKEF 259 (336)
T ss_pred CCCcHHHHHHHHHHHHHHCCCCcEEEEC--C-----CccHHHHHHHHHhCCCCCEEEEEeC--CcHHHHHHHhcCCcceE
Confidence 3444444 55566667789999999963 1 1223456677776543332223222 23455566665434332
Q ss_pred cCCCHHHHHHHHHHH
Q psy12143 409 PCDNLDEAARLAVKL 423 (443)
Q Consensus 409 ~f~s~e~Av~al~~l 423 (443)
++-+|...-.....+
T Consensus 260 ~~~~p~~~G~~av~~ 274 (336)
T PRK15408 260 GLWDVVQQGKISVYV 274 (336)
T ss_pred EecCHHHHHHHHHHH
Confidence 345666544433333
No 258
>cd07109 ALDH_AAS00426 Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like. Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD.
Probab=27.49 E-value=6.1e+02 Score=26.57 Aligned_cols=83 Identities=23% Similarity=0.194 Sum_probs=44.8
Q ss_pred CCcEEEEEcch---hHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHH
Q psy12143 295 DGSIGCLVNGA---GLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGI 371 (443)
Q Consensus 295 ~g~iaiitngG---G~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i 371 (443)
.||-.|+-.|- -.+....+++.++|..+.-.-=+.|. .. ...+.++++|.+|.|.. +|+ ..+.+.|
T Consensus 144 aGN~VvlKps~~~p~~~~~l~~~~~~aGlP~gv~~~v~g~-~~----~~~~~L~~~~~v~~v~f--tGs----~~~g~~i 212 (454)
T cd07109 144 AGNAVVVKPAEDAPLTALRLAELAEEAGLPAGALNVVTGL-GA----EAGAALVAHPGVDHISF--TGS----VETGIAV 212 (454)
T ss_pred cCCEEEEECCCCChHHHHHHHHHHHHcCcCccceEEEecC-ch----HHHHHHhcCCCCCEEEE--ECC----HHHHHHH
Confidence 45544443332 24556678888888653222112232 11 23466779999998773 443 3455566
Q ss_pred HHHHHHcCCCCcEEEEeCC
Q psy12143 372 IAAAQELSLKIPIICRLQG 390 (443)
Q Consensus 372 ~~~~~~~~~~kpiv~~~~g 390 (443)
.+.+.+ +.||++.-++|
T Consensus 213 ~~~aa~--~~~p~~lElgG 229 (454)
T cd07109 213 MRAAAE--NVVPVTLELGG 229 (454)
T ss_pred HHHHhh--cCCcEEEECCC
Confidence 665544 35676654444
No 259
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.19 E-value=4.2e+02 Score=25.40 Aligned_cols=66 Identities=15% Similarity=0.201 Sum_probs=35.3
Q ss_pred eecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCC
Q psy12143 327 DVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAM 405 (443)
Q Consensus 327 Dl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~Gi 405 (443)
+++-..+...|.-+-+. .+|++|+||+.+.. .. .++.|-+.-++ .++|||. .|..-.+..|+.-|+
T Consensus 159 eigr~~P~~~y~lAk~~--~~~~~DaiFiSCTn-lR----t~eii~~lE~~--~G~PVvs----SN~AT~W~~Lr~~g~ 224 (238)
T COG3473 159 EIGRQEPWAVYRLAKEV--FTPDADAIFISCTN-LR----TFEIIEKLERD--TGVPVVS----SNQATLWMALRLIGL 224 (238)
T ss_pred hhcccChHHHHHHHHHh--cCCCCCeEEEEeec-cc----cHHHHHHHHHH--hCCceee----ccHHHHHHHHHHcCC
Confidence 34333333334433333 38999999986332 11 12333333344 5799885 244456667777665
No 260
>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.
Probab=27.10 E-value=6.1e+02 Score=26.58 Aligned_cols=84 Identities=21% Similarity=0.211 Sum_probs=46.6
Q ss_pred CCcEEEEEcc---hhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHH
Q psy12143 295 DGSIGCLVNG---AGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGI 371 (443)
Q Consensus 295 ~g~iaiitng---GG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i 371 (443)
.||-.|+-.| --.+....+++.++|..+.-.-=+.|.. ....+.++++|.+|.|.. +|+ ....+.|
T Consensus 147 aGN~VV~Kps~~~p~~~~~l~~~~~~aGlP~gvv~~v~g~~-----~~~~~~L~~~~~v~~V~f--TGs----~~~g~~v 215 (456)
T cd07110 147 AGCTVVLKPSELTSLTELELAEIAAEAGLPPGVLNVVTGTG-----DEAGAPLAAHPGIDKISF--TGS----TATGSQV 215 (456)
T ss_pred cCCEEEEECcccchHHHHHHHHHHHHcCCCCCcEEEEecCc-----hHHHHHHhcCCCCCEEEE--ECC----HHHHHHH
Confidence 4665555333 2345667788888886543222223332 123577889999998773 443 3445556
Q ss_pred HHHHHHcCCCCcEEEEeCCC
Q psy12143 372 IAAAQELSLKIPIICRLQGT 391 (443)
Q Consensus 372 ~~~~~~~~~~kpiv~~~~g~ 391 (443)
.+.+.+ +-||++.-.+|.
T Consensus 216 ~~~aa~--~~~~~~lElgG~ 233 (456)
T cd07110 216 MQAAAQ--DIKPVSLELGGK 233 (456)
T ss_pred HHHHhh--cCCeEEEEcCCC
Confidence 555544 346665554443
No 261
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=26.73 E-value=1.8e+02 Score=27.40 Aligned_cols=43 Identities=7% Similarity=0.015 Sum_probs=24.2
Q ss_pred HHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcccCC
Q psy12143 369 EGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCD 411 (443)
Q Consensus 369 ~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~~f~ 411 (443)
+.|++++++...+.-|+++........+.+..++.|||++.++
T Consensus 14 ~al~~~~~~~~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~ 56 (207)
T PLN02331 14 RAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYP 56 (207)
T ss_pred HHHHHHHHcCCCCeEEEEEEEeCCCChHHHHHHHhCCCEEEec
Confidence 5677766652212223333333333456778888999996544
No 262
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=26.73 E-value=46 Score=35.60 Aligned_cols=52 Identities=27% Similarity=0.253 Sum_probs=33.6
Q ss_pred CCcchhhHHHHHhhhcccccccccccccccccccCCCHHHHHHHHHHCCCCCCCeeecCC
Q psy12143 1 MLSRSVTVLENVAKNTSLKALSAAPSWSQQKRNLNVHEHVSYTLLKEGGIPVPPFGVAKT 60 (443)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e~~ak~lL~~~GIpv~~~~~v~s 60 (443)
||--+.||+||++ |+.-++|..--. ..-...+.+++.++||+++.+...+.+
T Consensus 89 ~Lv~~lTV~ENii-------Lg~e~~~~~~~~-~~~~~~~i~~l~~~yGl~vdp~~~V~d 140 (501)
T COG3845 89 MLVPTLTVAENII-------LGLEPSKGGLID-RRQARARIKELSERYGLPVDPDAKVAD 140 (501)
T ss_pred ccccccchhhhhh-------hcCccccccccC-HHHHHHHHHHHHHHhCCCCCccceeec
Confidence 5667899999996 343333211111 112234578999999999999888764
No 263
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=26.44 E-value=66 Score=30.78 Aligned_cols=84 Identities=15% Similarity=0.146 Sum_probs=46.0
Q ss_pred CCcEEEEEcc---hhHHHHHHHHHHHcCCC------CC---------CeeeecCCCCHHHHHHHHHHHHcCCCccEEEEE
Q psy12143 295 DGSIGCLVNG---AGLAMATMDIIKLHGGE------PA---------NFLDVGGGATAAQVKEAFKIITADPKVCAIMVN 356 (443)
Q Consensus 295 ~g~iaiitng---GG~g~la~D~~~~~G~~------~~---------NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~ 356 (443)
.|++.+|..| +|+++++.=.+-.+|+. +. +|=-+..+...+.+.+ +...+.++|++++.
T Consensus 8 ~g~vl~i~Gs~~~~GA~~la~~~a~~~G~g~vt~~~~~~~~~~~~~~~pe~i~~~~~~~~~~~---~~~~~~~~d~v~ig 84 (254)
T cd01171 8 RGRVLVIGGSRGYTGAAYLAALAALRAGAGLVTVATPPEAAAVIKSYSPELMVHPLLETDIEE---LLELLERADAVVIG 84 (254)
T ss_pred CCeEEEEeCCCCCccHHHHHHHHHHHHccCEEEEEECHhhHHHHHhcCceeeEecccccchHH---HHhhhccCCEEEEe
Confidence 5778888775 69999999888888842 12 2211222222111111 12335678888863
Q ss_pred ccCCCCChHHHHHHHHHHHHHcCCCCcEEE
Q psy12143 357 IFGGIMRCDVIAEGIIAAAQELSLKIPIIC 386 (443)
Q Consensus 357 i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~ 386 (443)
++.... +..+.+++.+++ .+.|+|+
T Consensus 85 --~gl~~~-~~~~~i~~~~~~--~~~pvVl 109 (254)
T cd01171 85 --PGLGRD-EEAAEILEKALA--KDKPLVL 109 (254)
T ss_pred --cCCCCC-HHHHHHHHHHHh--cCCCEEE
Confidence 222221 445566665555 3677765
No 264
>PLN02467 betaine aldehyde dehydrogenase
Probab=26.07 E-value=8.4e+02 Score=26.15 Aligned_cols=82 Identities=27% Similarity=0.333 Sum_probs=45.8
Q ss_pred CcEEEEEcc---hhHHHHHHHHHHHcCCCCCCeeee-cCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHH
Q psy12143 296 GSIGCLVNG---AGLAMATMDIIKLHGGEPANFLDV-GGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGI 371 (443)
Q Consensus 296 g~iaiitng---GG~g~la~D~~~~~G~~~~NPvDl-~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i 371 (443)
||-.|+-.| --.+....+++.+.|... +-+-+ .|+.. ..-+.|..+|.+|.|.. +|+ ..+.+.|
T Consensus 179 GN~Vv~Kps~~tp~~~~~l~~~~~eag~P~-gvv~~v~g~~~-----~~~~~L~~~~~v~~v~f--TGs----~~~g~~v 246 (503)
T PLN02467 179 GCTAVLKPSELASVTCLELADICREVGLPP-GVLNVVTGLGT-----EAGAPLASHPGVDKIAF--TGS----TATGRKI 246 (503)
T ss_pred CCEEEEECCCcCcHHHHHHHHHHHHcCcCc-CeEEEEeCCch-----hHHHHHhcCCCCCEEEE--ECC----HHHHHHH
Confidence 454444333 234566778888888653 33333 33221 13456679999998773 443 3455666
Q ss_pred HHHHHHcCCCCcEEEEeCCC
Q psy12143 372 IAAAQELSLKIPIICRLQGT 391 (443)
Q Consensus 372 ~~~~~~~~~~kpiv~~~~g~ 391 (443)
.+.+.+ .-||++.-++|.
T Consensus 247 ~~~aa~--~~~~~~lElGG~ 264 (503)
T PLN02467 247 MTAAAQ--MVKPVSLELGGK 264 (503)
T ss_pred HHHHhc--cCCcEEEECCCC
Confidence 665554 346666555443
No 265
>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.
Probab=25.59 E-value=7.8e+02 Score=25.64 Aligned_cols=82 Identities=22% Similarity=0.260 Sum_probs=44.9
Q ss_pred CCcEEEEEcc---hhHHHHHHHHHHHcCCCCCCeeee-cCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHH
Q psy12143 295 DGSIGCLVNG---AGLAMATMDIIKLHGGEPANFLDV-GGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEG 370 (443)
Q Consensus 295 ~g~iaiitng---GG~g~la~D~~~~~G~~~~NPvDl-~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~ 370 (443)
.||-.|+-.| -..+....+.+.+.|.... -+-+ .|+.. ...+.++++|++|.|+. +|+ ..+.+.
T Consensus 144 aGN~VIlKps~~~~~~~~~l~~~l~~aglP~g-~v~~v~~~~~-----~~~~~l~~~~~vd~V~f--tGs----~~~g~~ 211 (451)
T cd07103 144 AGCTVVLKPAEETPLSALALAELAEEAGLPAG-VLNVVTGSPA-----EIGEALCASPRVRKISF--TGS----TAVGKL 211 (451)
T ss_pred cCCEEEEECCccCcHHHHHHHHHHHHcCCCcc-cEEEEecCch-----hHHHHHhcCCCCCEEEE--ECC----HHHHHH
Confidence 4554444433 2346667788888776432 2333 23221 13466789999998773 443 344556
Q ss_pred HHHHHHHcCCCCcEEEEeCC
Q psy12143 371 IIAAAQELSLKIPIICRLQG 390 (443)
Q Consensus 371 i~~~~~~~~~~kpiv~~~~g 390 (443)
+.+.+.+ .-||++.-.+|
T Consensus 212 v~~~aa~--~~~~~~lelgG 229 (451)
T cd07103 212 LMAQAAD--TVKRVSLELGG 229 (451)
T ss_pred HHHHHHh--cCCcEEEECCC
Confidence 6665554 34565544444
No 266
>KOG3432|consensus
Probab=25.29 E-value=4.3e+02 Score=22.55 Aligned_cols=60 Identities=28% Similarity=0.432 Sum_probs=42.6
Q ss_pred CCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeC
Q psy12143 322 PANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQ 389 (443)
Q Consensus 322 ~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~ 389 (443)
--|++-+.-+.+.+....|++-.++-+++..||+|. -+|+-|......++...|-|.-..
T Consensus 35 ~~Nf~vv~~~Tt~~eiedaF~~f~~RdDIaIiLInq--------~~Ae~iR~~vD~h~~~vPAvLeIp 94 (121)
T KOG3432|consen 35 EPNFLVVDSKTTVEEIEDAFKSFTARDDIAIILINQ--------FIAEMIRDRVDAHTQAVPAVLEIP 94 (121)
T ss_pred CCCEEEEeccCCHHHHHHHHHhhccccCeEEEEEhH--------HHHHHHHHHHHhccccCCeeEEec
Confidence 368998888888899999999999988888888743 344444444444334577665544
No 267
>PRK09330 cell division protein FtsZ; Validated
Probab=25.23 E-value=3.6e+02 Score=28.10 Aligned_cols=24 Identities=17% Similarity=0.235 Sum_probs=17.9
Q ss_pred CCcEEEEEcchhHHHHHHHHHHHcC
Q psy12143 295 DGSIGCLVNGAGLAMATMDIIKLHG 319 (443)
Q Consensus 295 ~g~iaiitngGG~g~la~D~~~~~G 319 (443)
.-+|-||..||| |--+.|.+...|
T Consensus 13 ~~~IkViGvGG~-G~Nav~~m~~~~ 36 (384)
T PRK09330 13 GAVIKVIGVGGG-GGNAVNRMIEEG 36 (384)
T ss_pred CCeEEEEEECCc-HHHHHHHHHHcC
Confidence 346888877775 777888888877
No 268
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.68 E-value=1.6e+02 Score=29.55 Aligned_cols=62 Identities=13% Similarity=0.097 Sum_probs=41.5
Q ss_pred CcEEEEEcchhH-HHHH----HHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 296 GSIGCLVNGAGL-AMAT----MDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 296 g~iaiitngGG~-g~la----~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
..+++|-.|-=. ...+ .-+|++.|.. .--+++..+.+.+.+.+.++.+-+||+|++|+|..|
T Consensus 33 p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~P 99 (297)
T PRK14186 33 PGLAVLRVGDDPASAVYVRNKEKACARVGIA-SFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLP 99 (297)
T ss_pred ceEEEEEeCCChHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 456666554221 2222 2356666643 233466778888889999999999999999999654
No 269
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=24.62 E-value=2.9e+02 Score=28.04 Aligned_cols=80 Identities=9% Similarity=-0.110 Sum_probs=44.6
Q ss_pred HHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEE--e-CCCCHH---HHHHHHHHCCCCcccCCCHH
Q psy12143 341 FKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICR--L-QGTNVD---DAKVLIASAAMKILPCDNLD 414 (443)
Q Consensus 341 l~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~--~-~g~~~~---~~~~~L~~~GiP~~~f~s~e 414 (443)
++.++++ .+++|++-.+|.+.-.....+.|.++.++ ..|||.. + .|.-.. ++-..|.+.|+-.--.-++|
T Consensus 228 l~~~~~~-~~~GiVl~~~G~Gn~p~~~~~~l~~a~~~---Gi~VV~~Sq~~~G~v~~~~Y~~g~~l~~~G~i~~g~lt~e 303 (336)
T TIGR00519 228 IRNYLSK-GYKGIVIEGTGLGHAPQNKLQELQEASDR---GVVVVMTTQCLNGRVNMNVYSTGRRLLQAGVIGGEDMLPE 303 (336)
T ss_pred HHHHHhC-CCCEEEEeeECCCCCCHHHHHHHHHHHHC---CCEEEEeCCCCCCccCcccccchhhHHhCCEEECCCCCHH
Confidence 3444443 58999986665432233456776665543 6899864 2 233111 22346777886331133788
Q ss_pred HHHHHHHHHH
Q psy12143 415 EAARLAVKLS 424 (443)
Q Consensus 415 ~Av~al~~l~ 424 (443)
.|.-.|..+.
T Consensus 304 ~A~~kL~~~L 313 (336)
T TIGR00519 304 VALVKLMWLL 313 (336)
T ss_pred HHHHHHHHHH
Confidence 8776665543
No 270
>PRK12412 pyridoxal kinase; Reviewed
Probab=24.49 E-value=4.1e+02 Score=25.65 Aligned_cols=71 Identities=13% Similarity=0.059 Sum_probs=44.1
Q ss_pred cchhHHHHHHH--HHHHcCCC---------CCCeee----ecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHH
Q psy12143 303 NGAGLAMATMD--IIKLHGGE---------PANFLD----VGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVI 367 (443)
Q Consensus 303 ngGG~g~la~D--~~~~~G~~---------~~NPvD----l~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~ 367 (443)
.|||.|+.+ | .+..+|.. ..|+-. ..-..+.+-+.+-++.+++|=.+|+|.+-. .. ..+.
T Consensus 12 ~sggaGi~a-D~~t~~~lg~~~~~v~Ta~t~q~~~~~~~~~v~~~~~~~i~~q~~~l~~d~~~~~ikiG~---l~-~~~~ 86 (268)
T PRK12412 12 TSGGAGIQA-DLKTFQELGVYGMTSLTTIVTMDPHNGWAHNVFPIPASTLKPQLETTIEGVGVDALKTGM---LG-SVEI 86 (268)
T ss_pred CCchHHHHH-HHHHHHHcCCeeceeeeEEEeEcCCCCcEEEEEeCCHHHHHHHHHHHHhCCCCCEEEECC---CC-CHHH
Confidence 467788754 6 56667732 245421 112235566788889999987889988622 22 2456
Q ss_pred HHHHHHHHHHc
Q psy12143 368 AEGIIAAAQEL 378 (443)
Q Consensus 368 a~~i~~~~~~~ 378 (443)
++.+.+.+++.
T Consensus 87 v~~i~~~~~~~ 97 (268)
T PRK12412 87 IEMVAETIEKH 97 (268)
T ss_pred HHHHHHHHHhc
Confidence 67777777763
No 271
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.45 E-value=1.6e+02 Score=29.59 Aligned_cols=116 Identities=11% Similarity=0.071 Sum_probs=69.9
Q ss_pred CCcEEEEEcchhHH-HH----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccC--CCCC----
Q psy12143 295 DGSIGCLVNGAGLA-MA----TMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFG--GIMR---- 363 (443)
Q Consensus 295 ~g~iaiitngGG~g-~l----a~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~--~~~~---- 363 (443)
...+++|-.|--.+ .. -.-+|++.|... --+++..+.+.+.+.+.++.+-+||+||+|+|..|. ++..
T Consensus 32 ~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~-~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~ 110 (296)
T PRK14188 32 TPGLAVVLVGEDPASQVYVRSKGKQTKEAGMAS-FEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVI 110 (296)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHH
Confidence 34566666553222 22 233667777542 245667788888899999999999999999996442 1110
Q ss_pred -------------h--------------HHHHHHHHHHHHHcC---CCCcEEEEe-CCCCHHHHHHHHHHCCCCcccCC
Q psy12143 364 -------------C--------------DVIAEGIIAAAQELS---LKIPIICRL-QGTNVDDAKVLIASAAMKILPCD 411 (443)
Q Consensus 364 -------------~--------------~~~a~~i~~~~~~~~---~~kpiv~~~-~g~~~~~~~~~L~~~GiP~~~f~ 411 (443)
. .-.+.++++.++.++ ..|-|+++- .+..-..-...|.+.|.++.++.
T Consensus 111 ~~I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~ 189 (296)
T PRK14188 111 QAIDPEKDVDGLHVVNAGRLATGETALVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAH 189 (296)
T ss_pred hccCcccccccCChhhHHHHhCCCCCCcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEEC
Confidence 0 012567777777653 245555432 23322233456777899887775
No 272
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=24.30 E-value=2.6e+02 Score=27.57 Aligned_cols=81 Identities=16% Similarity=0.229 Sum_probs=47.7
Q ss_pred CcEEEEEcchhHH------HHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHH
Q psy12143 296 GSIGCLVNGAGLA------MATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIIT-ADPKVCAIMVNIFGGIMRCDVIA 368 (443)
Q Consensus 296 g~iaiitngGG~g------~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll-~dp~vd~vlv~i~~~~~~~~~~a 368 (443)
++|++++...+.. --..+++..+|......+-..++.+.+.-..+++.++ ..+..++||+. .|.+|
T Consensus 177 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------nD~~A 249 (343)
T PRK10727 177 TRIGYLCSNHSISDAEDRLQGYYDALAESGIPANDRLVTFGEPDESGGEQAMTELLGRGRNFTAVACY-------NDSMA 249 (343)
T ss_pred ccEEEEeCCccccchHHHHHHHHHHHHHCCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEEEc-------CcHHH
Confidence 5688885332211 1134677777765432222345555554444555555 45678898851 36888
Q ss_pred HHHHHHHHHcCCCCc
Q psy12143 369 EGIIAAAQELSLKIP 383 (443)
Q Consensus 369 ~~i~~~~~~~~~~kp 383 (443)
.++++++++.+...|
T Consensus 250 ~g~~~al~~~G~~vP 264 (343)
T PRK10727 250 AGAMGVLNDNGIDVP 264 (343)
T ss_pred HHHHHHHHHcCCCCC
Confidence 999999998765444
No 273
>COG1012 PutA NAD-dependent aldehyde dehydrogenases [Energy production and conversion]
Probab=23.93 E-value=4.9e+02 Score=27.79 Aligned_cols=70 Identities=31% Similarity=0.417 Sum_probs=44.7
Q ss_pred HHHHHHHHHHcCCCCCCeee-ecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEE
Q psy12143 308 AMATMDIIKLHGGEPANFLD-VGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIIC 386 (443)
Q Consensus 308 g~la~D~~~~~G~~~~NPvD-l~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~ 386 (443)
+...+..+.+.|. |..-+. ++|... + .-+.+..||++|.|. ++|+ ..+...|.+.+.+ +-||+..
T Consensus 176 a~~l~~~~~~agl-P~Gv~nvv~g~~~-~----~g~~l~~~p~v~~i~--FTGS----t~~G~~i~~~Aa~--~~k~~~l 241 (472)
T COG1012 176 ALALAELAAEAGL-PAGVLNVVTGGGA-E----VGDALVAHPDVDAIS--FTGS----TAVGRAIAAAAAA--NLKPVTL 241 (472)
T ss_pred HHHHHHHHHHhCC-CCCeEEEEeCCCc-h----HHHHHhcCCCCCEEE--EECC----hHHHHHHHHHHhh--cCCcEEE
Confidence 7778888888884 444443 344332 2 456678999999877 3443 3455667666655 4577776
Q ss_pred EeCCC
Q psy12143 387 RLQGT 391 (443)
Q Consensus 387 ~~~g~ 391 (443)
-++|.
T Consensus 242 ELGGk 246 (472)
T COG1012 242 ELGGK 246 (472)
T ss_pred ECCCC
Confidence 66665
No 274
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=23.89 E-value=8.8e+02 Score=25.63 Aligned_cols=81 Identities=22% Similarity=0.248 Sum_probs=42.8
Q ss_pred CCcEEEEEcch---hHHHHHHHHHHHcCCCCCCeeee-cCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHH
Q psy12143 295 DGSIGCLVNGA---GLAMATMDIIKLHGGEPANFLDV-GGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEG 370 (443)
Q Consensus 295 ~g~iaiitngG---G~g~la~D~~~~~G~~~~NPvDl-~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~ 370 (443)
.||..|+-.|- -.+...++.+.+.|..+. -+-+ .|+ . ...+.++++|.+|.|.. +|+ ..+.+.
T Consensus 163 aGN~VvlKps~~tp~~~~~l~~~l~~aGlP~g-vv~~v~g~--~----~~~~~L~~~~~v~~V~f--TGs----~~~g~~ 229 (478)
T cd07085 163 CGNTFVLKPSERVPGAAMRLAELLQEAGLPDG-VLNVVHGG--K----EAVNALLDHPDIKAVSF--VGS----TPVGEY 229 (478)
T ss_pred cCCEEEEECCCcCcHHHHHHHHHHHHhCCCCC-cEEEEecC--H----HHHHHHhcCCCcCEEEE--ECC----HHHHHH
Confidence 45544443332 235667788888775432 2222 232 1 23567889999998773 443 344555
Q ss_pred HHHHHHHcCCCCcEEEEeCC
Q psy12143 371 IIAAAQELSLKIPIICRLQG 390 (443)
Q Consensus 371 i~~~~~~~~~~kpiv~~~~g 390 (443)
|.+.+.+ ..||++.-++|
T Consensus 230 i~~~aa~--~~~~~~lElgG 247 (478)
T cd07085 230 IYERAAA--NGKRVQALGGA 247 (478)
T ss_pred HHHHHhh--cCCcEEecCCC
Confidence 5554443 34565544433
No 275
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=23.48 E-value=6.1e+02 Score=25.06 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHcCCCccEEEEEccCCCC-----------ChHHHHHHHHHHHHHcCCCCcEEEEeCCC--CHHHHHHH
Q psy12143 333 TAAQVKEAFKIITADPKVCAIMVNIFGGIM-----------RCDVIAEGIIAAAQELSLKIPIICRLQGT--NVDDAKVL 399 (443)
Q Consensus 333 ~~~~~~~al~~ll~dp~vd~vlv~i~~~~~-----------~~~~~a~~i~~~~~~~~~~kpiv~~~~g~--~~~~~~~~ 399 (443)
+.+.|.++.+.+. +..+|+|=+|+..... ...+....|++..++. .++||.+....+ +..+..+.
T Consensus 111 ~~~~~~~~a~~~~-~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~Pv~vKl~~~~~~~~~~a~~ 188 (299)
T cd02940 111 NKEDWTELAKLVE-EAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA-VKIPVIAKLTPNITDIREIARA 188 (299)
T ss_pred CHHHHHHHHHHHH-hcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh-cCCCeEEECCCCchhHHHHHHH
Confidence 4467888888774 4568888887542210 1123445556555543 468998876533 23344566
Q ss_pred HHHCCCC
Q psy12143 400 IASAAMK 406 (443)
Q Consensus 400 L~~~GiP 406 (443)
+.+.|+-
T Consensus 189 ~~~~Gad 195 (299)
T cd02940 189 AKEGGAD 195 (299)
T ss_pred HHHcCCC
Confidence 7777754
No 276
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.06 E-value=3.7e+02 Score=25.56 Aligned_cols=64 Identities=28% Similarity=0.338 Sum_probs=38.4
Q ss_pred HHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHc-CCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCc
Q psy12143 312 MDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITA-DPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIP 383 (443)
Q Consensus 312 ~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~-dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kp 383 (443)
.+++..+|.+.. .+...+..+.+.-.+.++.+++ .|..++|++. .+.+|.++.+++++.+...|
T Consensus 141 ~~a~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~A~gvl~al~~~gl~vP 205 (269)
T cd06287 141 RAFAAEHGMPPV-VLRVDEAGGEEAGYAACAQLLAQHPDLDALCVP-------VDAFAVGAVRAATELGRAVP 205 (269)
T ss_pred HHHHHHcCCCcc-eeEecCCCChHHHHHHHHHHHhCCCCCCEEEEc-------CcHHHHHHHHHHHHcCCCCC
Confidence 355666665432 3333444443443445555554 4678998852 36788999999998765445
No 277
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=22.89 E-value=9e+02 Score=26.59 Aligned_cols=96 Identities=15% Similarity=0.040 Sum_probs=56.0
Q ss_pred EEEEcchhHHHHHHHHHHHcCCCC----------------CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCC
Q psy12143 299 GCLVNGAGLAMATMDIIKLHGGEP----------------ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIM 362 (443)
Q Consensus 299 aiitngGG~g~la~D~~~~~G~~~----------------~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~ 362 (443)
.||...|-.|-..+..+.+.|.+. ..++ +-||++.....+... =.+.|++++...
T Consensus 403 vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v-~~GDat~~~~L~~ag----i~~A~~vv~~~~---- 473 (601)
T PRK03659 403 VIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKV-YYGDATQLELLRAAG----AEKAEAIVITCN---- 473 (601)
T ss_pred EEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeE-EEeeCCCHHHHHhcC----CccCCEEEEEeC----
Confidence 455567779999999999988431 2222 445555443322221 134566665321
Q ss_pred ChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCc
Q psy12143 363 RCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKI 407 (443)
Q Consensus 363 ~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~ 407 (443)
.++....++..+++.+++.+|+++.... +..+.|++.|.-.
T Consensus 474 -d~~~n~~i~~~~r~~~p~~~IiaRa~~~---~~~~~L~~~Ga~~ 514 (601)
T PRK03659 474 -EPEDTMKIVELCQQHFPHLHILARARGR---VEAHELLQAGVTQ 514 (601)
T ss_pred -CHHHHHHHHHHHHHHCCCCeEEEEeCCH---HHHHHHHhCCCCE
Confidence 2344455666677766678888876554 3445677777654
No 278
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=22.76 E-value=6.4e+02 Score=24.17 Aligned_cols=76 Identities=14% Similarity=0.107 Sum_probs=40.4
Q ss_pred CCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEE-EEeCCCCHHHHHHHHHHCCCCcc
Q psy12143 331 GATAAQ-VKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPII-CRLQGTNVDDAKVLIASAAMKIL 408 (443)
Q Consensus 331 ~~~~~~-~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv-~~~~g~~~~~~~~~L~~~GiP~~ 408 (443)
..+.+. +..+.+.+.++|++++|++. .+..+.++.+++++.+.+..|. +.+.+ ..+..+.|++.-+...
T Consensus 166 ~~~~~~~~~~~~~~L~~~~~~~ai~~~-------~d~~a~ga~~al~~~g~~~~i~vvg~d~--~~~~~~~l~~g~i~~~ 236 (302)
T TIGR02637 166 DDDAQKSYQEAQGLLKSYPNLKGIIAP-------TTVGIKAAAQAVSDAKLIGKVKLTGLGL--PSEMAKYVKNGTVKAF 236 (302)
T ss_pred CchHHHHHHHHHHHHHhCCCccEEEeC-------CCchHHHHHHHHHhcCCCCCEEEEEcCC--cHHHHHHHhcCccceE
Confidence 334443 44444555567899999962 1345667777777754322333 32322 3456666765444433
Q ss_pred cCCCHHH
Q psy12143 409 PCDNLDE 415 (443)
Q Consensus 409 ~f~s~e~ 415 (443)
+..+|..
T Consensus 237 ~~q~p~~ 243 (302)
T TIGR02637 237 ALWNPID 243 (302)
T ss_pred EEeCHHH
Confidence 3456643
No 279
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=22.74 E-value=3.6e+02 Score=25.04 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHcC-CCccEEEEEccCCCCChHHHHHHHHHHHHHcCCC
Q psy12143 333 TAAQVKEAFKIITAD-PKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLK 381 (443)
Q Consensus 333 ~~~~~~~al~~ll~d-p~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~ 381 (443)
+.+...+.++.++++ |..++|++. .+.+|.++..++++++.+
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a~~~~~~l~~~g~~ 200 (260)
T cd06286 158 TIEDGERIGHQLLKMKDRPDAIFTG-------SDEVAAGIITEAKKQGIR 200 (260)
T ss_pred CHHHHHHHHHHHHcCCCCCCEEEEc-------chHHHHHHHHHHHHcCCC
Confidence 334445556666654 788988862 357788888998887543
No 280
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=22.65 E-value=6.2e+02 Score=23.41 Aligned_cols=86 Identities=17% Similarity=0.143 Sum_probs=49.2
Q ss_pred CCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCC-CcEEEEeCCCCHHHHHHHHHHCCCCcc
Q psy12143 331 GATAAQ-VKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLK-IPIICRLQGTNVDDAKVLIASAAMKIL 408 (443)
Q Consensus 331 ~~~~~~-~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~-kpiv~~~~g~~~~~~~~~L~~~GiP~~ 408 (443)
+.+.+. .....+.+.++| +++|+.. .+..+.++++++++.+.. ++.++.+.+ ..+..+.+++..+...
T Consensus 164 ~~~~~~a~~~~~~~l~~~~-~~~i~~~-------~~~~~~g~~~al~~~g~~~~~~v~g~d~--~~~~~~~i~~g~~~a~ 233 (257)
T PF13407_consen 164 DWDPEDARQAIENLLQANP-VDAIIAC-------NDGMALGAAQALQQAGRAGKVIVVGFDG--SPEALEAIKDGNITAT 233 (257)
T ss_dssp TTSHHHHHHHHHHHHHHTT-EEEEEES-------SHHHHHHHHHHHHHTTCTTTSEEEEEEC--HHHHHHHHHTTSSSEE
T ss_pred CCCHHHHHHHHHHhhhcCC-ceEEEeC-------CChHHHHHHHHHHHcCCcccceeecCCC--CHHHHHHHHCCCCeEE
Confidence 445444 445555555676 8888741 356778888888886543 554444433 4566777877766644
Q ss_pred cCCCHHH-HHHHHHHHHHH
Q psy12143 409 PCDNLDE-AARLAVKLSSI 426 (443)
Q Consensus 409 ~f~s~e~-Av~al~~l~~~ 426 (443)
+..+|.. +-.++..+.++
T Consensus 234 v~~~~~~~g~~av~~l~~~ 252 (257)
T PF13407_consen 234 VGQDPYQQGYKAVEALFDA 252 (257)
T ss_dssp EEE-HHHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHH
Confidence 4566554 33333333433
No 281
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=22.60 E-value=4.7e+02 Score=27.30 Aligned_cols=100 Identities=14% Similarity=0.082 Sum_probs=48.6
Q ss_pred CCc-EEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHH
Q psy12143 295 DGS-IGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIA 373 (443)
Q Consensus 295 ~g~-iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~ 373 (443)
+-+ |++-..|+-+.--.+..+..--....=|+=+.+. +++-+.++++.+... -.|++... ..+ .+.|.+
T Consensus 69 ~~D~Ialr~~S~DPae~fa~~vk~V~~a~~~PLIL~~~-D~evl~aale~~~~~----kpLL~aAt-~eN----yk~m~~ 138 (386)
T PF03599_consen 69 GADMIALRLESGDPAEEFAKAVKKVAEAVDVPLILCGC-DPEVLKAALEACAGK----KPLLYAAT-EEN----YKAMAA 138 (386)
T ss_dssp E-SEEEEE-GGGSTHHHHHHHHHHHHHC-SSEEEEESS-HHHHHHHHHHHTTTS------EEEEEB-TTT----HHHHHH
T ss_pred cccEEEEEecCCChHHHHHHHHHHHHHhcCCCEEEEeC-CHHHHHHHHHHhCcC----CcEEeEcC-HHH----HHHHHH
Confidence 445 6666667665223333333322234667766666 666678888877532 12332111 123 355566
Q ss_pred HHHHcCCCCcEEEEeCCC-CHHH-HHHHHHHCCCC
Q psy12143 374 AAQELSLKIPIICRLQGT-NVDD-AKVLIASAAMK 406 (443)
Q Consensus 374 ~~~~~~~~kpiv~~~~g~-~~~~-~~~~L~~~GiP 406 (443)
++.+ ++.|+++....+ +... --..|.+.|+-
T Consensus 139 lA~~--y~~pl~v~sp~Dln~lk~Ln~~l~~~Gv~ 171 (386)
T PF03599_consen 139 LAKE--YGHPLIVSSPIDLNLLKQLNIKLTELGVK 171 (386)
T ss_dssp HHHH--CT-EEEEE-SSCHHHHHHHHHHHHTTT-G
T ss_pred HHHH--cCCeEEEEecccHHHHHHHHHHHHhcCcc
Confidence 6666 567877765443 2222 23467777863
No 282
>cd07089 ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid; and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and also, the Mycobacterium tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence; and other similar sequences, are included in this CD.
Probab=22.56 E-value=8e+02 Score=25.78 Aligned_cols=83 Identities=20% Similarity=0.191 Sum_probs=46.4
Q ss_pred CCcEEEEEcch---hHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHH
Q psy12143 295 DGSIGCLVNGA---GLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGI 371 (443)
Q Consensus 295 ~g~iaiitngG---G~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i 371 (443)
.||-.|+-.|- ..+.+..+++.+.|..+.-.-=+.|+.. ...+.+.++|.+|.|.. +|+ ..+.+.|
T Consensus 150 aGN~vvlKps~~~p~~~~~l~~~~~~aglP~g~~~~v~g~~~-----~~~~~l~~~~~~~~v~f--tGs----~~~g~~v 218 (459)
T cd07089 150 AGNTVVLKPAPDTPLSALLLGEIIAETDLPAGVVNVVTGSDN-----AVGEALTTDPRVDMVSF--TGS----TAVGRRI 218 (459)
T ss_pred cCCEEEEECCCCChHHHHHHHHHHHHcCCCccceEEEecCcH-----HHHHHHhcCCCCCEEEE--ECc----HHHHHHH
Confidence 46655554332 3466778889888865433222334322 23467789999998873 343 3445555
Q ss_pred HHHHHHcCCCCcEEEEeCC
Q psy12143 372 IAAAQELSLKIPIICRLQG 390 (443)
Q Consensus 372 ~~~~~~~~~~kpiv~~~~g 390 (443)
.+.+.+ .-||++.-++|
T Consensus 219 ~~~aa~--~~~~~~lelgG 235 (459)
T cd07089 219 MAQAAA--TLKRVLLELGG 235 (459)
T ss_pred HHHHHh--cCCcEEEECCC
Confidence 555444 23565544444
No 283
>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.
Probab=22.46 E-value=9e+02 Score=25.24 Aligned_cols=84 Identities=24% Similarity=0.154 Sum_probs=44.7
Q ss_pred CCcEEEEEcc---hhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHH
Q psy12143 295 DGSIGCLVNG---AGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGI 371 (443)
Q Consensus 295 ~g~iaiitng---GG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i 371 (443)
.||-.|+-.| --.+....+.+.++|..+.-.-=+.|. .. ...+.++++|.+|.|+. +|+ ..+.+.|
T Consensus 144 aGN~VIlkps~~~p~~~~~l~~~l~~aglP~g~v~~v~g~-~~----~~~~~L~~~~~i~~V~f--tGs----~~~g~~v 212 (455)
T cd07093 144 FGNTVVLKPSEWTPLTAWLLAELANEAGLPPGVVNVVHGF-GP----EAGAALVAHPDVDLISF--TGE----TATGRTI 212 (455)
T ss_pred cCCEEEeECCCcCcHHHHHHHHHHHhcCCCccceEEEecC-ch----HHHHHHhcCCCccEEEE--ECC----HHHHHHH
Confidence 4554444433 123455677777777543222112222 11 13467788999998773 343 3455666
Q ss_pred HHHHHHcCCCCcEEEEeCCC
Q psy12143 372 IAAAQELSLKIPIICRLQGT 391 (443)
Q Consensus 372 ~~~~~~~~~~kpiv~~~~g~ 391 (443)
.+.+.+ ..||++.-.+|.
T Consensus 213 ~~~aa~--~~~~~~lelgG~ 230 (455)
T cd07093 213 MRAAAP--NLKPVSLELGGK 230 (455)
T ss_pred HHHHhh--cccceEeecCCC
Confidence 665554 356766555443
No 284
>PRK07475 hypothetical protein; Provisional
Probab=22.33 E-value=5.3e+02 Score=24.80 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=20.6
Q ss_pred CCcEEEEEcchhHHHHHHHHHHHcCCC
Q psy12143 295 DGSIGCLVNGAGLAMATMDIIKLHGGE 321 (443)
Q Consensus 295 ~g~iaiitngGG~g~la~D~~~~~G~~ 321 (443)
+++|||+|..+.. ++-+.++..|..
T Consensus 122 ~~kIGILtt~~t~--l~~~~l~~~Gi~ 146 (245)
T PRK07475 122 GQKVGILTADASS--LTPAHLLAVGVP 146 (245)
T ss_pred CCeEEEEeCCchh--hhHHHHHhCCCC
Confidence 5689999999974 678899999965
No 285
>PF07805 HipA_N: HipA-like N-terminal domain; InterPro: IPR012894 The members of this entry contain a region that is found towards the N terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=22.17 E-value=66 Score=25.16 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=18.4
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCC
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKT 60 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s 60 (443)
....|+.+.++.++.||++|+..++..
T Consensus 42 ~~~nE~~~~~lA~~~Gi~v~~~~l~~~ 68 (81)
T PF07805_consen 42 LVENEYACMRLARAAGIPVPETRLIRF 68 (81)
T ss_dssp HHHHHHHHHHHHHHTT-----EEEEEE
T ss_pred hHHHHHHHHHHHHHcCCCcCceEEEEE
Confidence 457799999999999999999988653
No 286
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=21.88 E-value=1.3e+02 Score=26.84 Aligned_cols=89 Identities=13% Similarity=0.052 Sum_probs=46.0
Q ss_pred HHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHHHhhchhhhhhcCCCCcccCeEEEEeee
Q psy12143 63 EAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERK 142 (443)
Q Consensus 63 ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v 142 (443)
++.+.+++.|+ ||.+=.....|+ -++..|.| |-.....+-...+++....-+. ..=.+++++
T Consensus 19 aA~a~a~~~g~-~VtvaVVD~~G~-~~a~~RmD---ga~~~s~eiA~~KA~tA~~~~~-------------~t~~l~~~~ 80 (141)
T COG3193 19 AAVAEAQQLGV-PVTVAVVDAGGH-LVALERMD---GASPLSAEIAFGKAYTAAALGR-------------PTGELAEAA 80 (141)
T ss_pred HHHHHHHHhCC-ceEEEEECCCCC-EEEEEecC---CCcccchhHHHHHHHHHHHhCC-------------chHHHHHHh
Confidence 45666788898 888776533222 12211222 1111112223344444332211 111246677
Q ss_pred CCCeeeEEEEEEeccCCCcEEeecCCCCcchh
Q psy12143 143 YPRKEYYFAFMMERSFAGPVLIASSQGGVNIE 174 (443)
Q Consensus 143 ~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE 174 (443)
..+.-++.+....+ ||+++| .||+.+-
T Consensus 81 ~~g~~~~~~~~~~~---g~lv~~--~GGv~I~ 107 (141)
T COG3193 81 APGPPLVGGVPLLA---GGLVPF--EGGVPIK 107 (141)
T ss_pred cCCCCceeeeecCC---Cceeee--cCceEEE
Confidence 76888888877665 456665 5999876
No 287
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=21.72 E-value=6.7e+02 Score=25.94 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=10.1
Q ss_pred HHHHHHHHHHCCCCc
Q psy12143 393 VDDAKVLIASAAMKI 407 (443)
Q Consensus 393 ~~~~~~~L~~~GiP~ 407 (443)
..++.+.|.++|+|.
T Consensus 238 ~~~A~~~L~~aGv~l 252 (369)
T COG1509 238 AREACAKLRDAGVPL 252 (369)
T ss_pred HHHHHHHHHHcCcee
Confidence 344567777777776
No 288
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.70 E-value=6.6e+02 Score=23.38 Aligned_cols=106 Identities=13% Similarity=0.072 Sum_probs=50.2
Q ss_pred HHHHHHcCCCCCCeeeecCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEE-EeC
Q psy12143 312 MDIIKLHGGEPANFLDVGGGATAAQ-VKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIIC-RLQ 389 (443)
Q Consensus 312 ~D~~~~~G~~~~NPvDl~g~~~~~~-~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~-~~~ 389 (443)
.|.++.+|.... .+...++.+.+. +..+-+.+.+.|+.++|++. .+.+|.++.+++++.+..+-+-+ .+.
T Consensus 148 ~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a~g~~~al~~~g~~~di~vvg~d 219 (277)
T cd06319 148 KEAMKEAGCDLA-GIRQQKDFSYQETFDYTNDLLTANPDIRAIWLQ-------GSDRYQGALDAIATAGKTGKVLLICFD 219 (277)
T ss_pred HHHHHhcCCceE-eeccCCCCCHHHHHHHHHHHHHhCCCCCEEEEC-------CCccchHHHHHHHHcCCCCCEEEEEcC
Confidence 355555553321 122234444444 44334444467888988852 24556788888888654333432 233
Q ss_pred CCCHHHHHHHHHHCCCCcccCCCHHH-HHHHHHHHHHHH
Q psy12143 390 GTNVDDAKVLIASAAMKILPCDNLDE-AARLAVKLSSIV 427 (443)
Q Consensus 390 g~~~~~~~~~L~~~GiP~~~f~s~e~-Av~al~~l~~~~ 427 (443)
+ ...+...+.+.-+...+..++.+ +..++..|.+..
T Consensus 220 ~--~~~~~~~~~~~~~~~tv~~~~~~~g~~a~~~l~~~~ 256 (277)
T cd06319 220 A--EPEFIELLKSGALVGAGMQQPFLMGERAVETVYNAL 256 (277)
T ss_pred C--CHHHHHHhhcCceEEEEecCHHHHHHHHHHHHHHHH
Confidence 3 23344444332222112344443 444444455554
No 289
>KOG4166|consensus
Probab=21.69 E-value=41 Score=35.39 Aligned_cols=53 Identities=25% Similarity=0.313 Sum_probs=30.7
Q ss_pred chhHHHHHHHHHHHcCCCCCCe----eeecCCCCHHH-HHHHHHHHHcCCCccEEEEE
Q psy12143 304 GAGLAMATMDIIKLHGGEPANF----LDVGGGATAAQ-VKEAFKIITADPKVCAIMVN 356 (443)
Q Consensus 304 gGG~g~la~D~~~~~G~~~~NP----vDl~g~~~~~~-~~~al~~ll~dp~vd~vlv~ 356 (443)
|||+|.|..-.=...|++++|| +|+-|+++-.- ..+...+.-.+--|+.+++|
T Consensus 520 SGGLGtMGfGLPAAIGAsVA~P~~iViDIDGDaSF~Mt~~ELat~rq~~~PVKiLiLN 577 (675)
T KOG4166|consen 520 SGGLGTMGFGLPAAIGASVANPDAIVIDIDGDASFIMTVQELATIRQENLPVKILILN 577 (675)
T ss_pred cCCccccccCcchhhcccccCcccEEEeccCCceeeeehHhhhhhhhcCCceEEEEec
Confidence 4556666555555556788999 66666666432 33333333455556777764
No 290
>cd07097 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like. Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group.
Probab=21.58 E-value=8.2e+02 Score=25.82 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=44.6
Q ss_pred CCcEEEEEcc---hhHHHHHHHHHHHcCCCCCCeeee-cCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHH
Q psy12143 295 DGSIGCLVNG---AGLAMATMDIIKLHGGEPANFLDV-GGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEG 370 (443)
Q Consensus 295 ~g~iaiitng---GG~g~la~D~~~~~G~~~~NPvDl-~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~ 370 (443)
.||-.|+-.| -..+.+..+++.+.|..+. =+-+ .|+.. ...+.+.++|.+|.|.. +|+ ..+.+.
T Consensus 162 aGN~VIlKps~~~p~~~~~l~~~~~~aGlP~g-vv~vv~g~~~-----~~~~~l~~~~~v~~v~f--TGs----~~~g~~ 229 (473)
T cd07097 162 YGNTVVFKPAELTPASAWALVEILEEAGLPAG-VFNLVMGSGS-----EVGQALVEHPDVDAVSF--TGS----TAVGRR 229 (473)
T ss_pred cCCEEEEeCCCCCcHHHHHHHHHHHHcCCCCc-ceEEeccCch-----HHHHHHhcCCCCCEEEE--ECc----HHHHHH
Confidence 4554444333 2345666777887775432 2222 23211 23467788999998763 443 345566
Q ss_pred HHHHHHHcCCCCcEEEEeCC
Q psy12143 371 IIAAAQELSLKIPIICRLQG 390 (443)
Q Consensus 371 i~~~~~~~~~~kpiv~~~~g 390 (443)
|.+.+.+ +-||++.-++|
T Consensus 230 i~~~aa~--~~~~~~lElGG 247 (473)
T cd07097 230 IAAAAAA--RGARVQLEMGG 247 (473)
T ss_pred HHHHHhc--cCCcEEEECCC
Confidence 6665554 34666554444
No 291
>cd07118 ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydrogenase-like. Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans, D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent, L-sorbosone dehydrogenase.
Probab=21.53 E-value=9.5e+02 Score=25.18 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=39.0
Q ss_pred CCcEEEEE---cchhHHHHHHHHHHHcCCCCC--CeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHH
Q psy12143 295 DGSIGCLV---NGAGLAMATMDIIKLHGGEPA--NFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAE 369 (443)
Q Consensus 295 ~g~iaiit---ngGG~g~la~D~~~~~G~~~~--NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~ 369 (443)
.||-.|+- ..--.+....+.+.++|..+. |.+ .|+.. ..-+.|.++|.+|.|.. +|+ ..+.+
T Consensus 146 aGN~Vi~Kps~~~p~~~~~l~~~~~~aG~P~g~~~~v--~g~~~-----~~~~~L~~~~~v~~v~f--tGs----~~~g~ 212 (454)
T cd07118 146 AGCTVVVKPSEFTSGTTLMLAELLIEAGLPAGVVNIV--TGYGA-----TVGQAMTEHPDVDMVSF--TGS----TRVGK 212 (454)
T ss_pred cCCEEEEECCCCCcHHHHHHHHHHHhcCCCccceEEE--ecCCc-----hHHHHHhcCCCCCEEEE--ECc----HHHHH
Confidence 45555552 223346677788988886542 333 23221 12356789999998863 443 24455
Q ss_pred HHHHHHHH
Q psy12143 370 GIIAAAQE 377 (443)
Q Consensus 370 ~i~~~~~~ 377 (443)
.|.+.+.+
T Consensus 213 ~i~~~aa~ 220 (454)
T cd07118 213 AIAAAAAR 220 (454)
T ss_pred HHHHHHHh
Confidence 55555444
No 292
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=21.51 E-value=2e+02 Score=29.36 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=19.5
Q ss_pred CCcEEEEEcchhHHHHHHHHHHHcC
Q psy12143 295 DGSIGCLVNGAGLAMATMDIIKLHG 319 (443)
Q Consensus 295 ~g~iaiitngGG~g~la~D~~~~~G 319 (443)
.-+|.||..||| |--+.|.+...|
T Consensus 11 ~~~I~VIGvGg~-G~n~v~~m~~~~ 34 (338)
T COG0206 11 KARIKVIGVGGA-GGNAVNRMIEEG 34 (338)
T ss_pred CceEEEEEeCCc-chHHHHHHHHhh
Confidence 457899988775 777889888888
No 293
>cd07088 ALDH_LactADH-AldA Escherichia coli lactaldehyde dehydrogenase AldA-like. Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.
Probab=21.32 E-value=8.6e+02 Score=25.51 Aligned_cols=70 Identities=23% Similarity=0.282 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCCCCCCeeee-cCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEE
Q psy12143 307 LAMATMDIIKLHGGEPANFLDV-GGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPII 385 (443)
Q Consensus 307 ~g~la~D~~~~~G~~~~NPvDl-~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv 385 (443)
.+...++.+.+.|..+. =+-+ .|+.. ...+.++++|.+|.|.. +|+ ....+.|.+.+.+ ..||++
T Consensus 175 ~~~~l~~~~~~aglP~g-vv~~v~g~~~-----~~~~~l~~~~~v~~V~f--tGs----~~~g~~i~~~aa~--~~~~~~ 240 (468)
T cd07088 175 NALEFAELVDEAGLPAG-VLNIVTGRGS-----VVGDALVAHPKVGMISL--TGS----TEAGQKIMEAAAE--NITKVS 240 (468)
T ss_pred HHHHHHHHHHHcCcCcc-ceEEEecCch-----HHHHHHhcCCCCCEEEE--ECc----HHHHHHHHHHHHh--cCCcEE
Confidence 44566677777775432 2222 23211 13356778999998763 443 3445566555554 345665
Q ss_pred EEeCC
Q psy12143 386 CRLQG 390 (443)
Q Consensus 386 ~~~~g 390 (443)
.-.+|
T Consensus 241 lelGG 245 (468)
T cd07088 241 LELGG 245 (468)
T ss_pred EECCC
Confidence 54444
No 294
>cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like. 4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD.
Probab=21.21 E-value=7.8e+02 Score=25.75 Aligned_cols=71 Identities=18% Similarity=0.149 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEE
Q psy12143 307 LAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIIC 386 (443)
Q Consensus 307 ~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~ 386 (443)
.+....+.+.++|....-.-=+.|... ...+.++.+|.+|.|.. +|+ ..+.+.|.+.+.+ ..||++.
T Consensus 159 ~~~~l~~~~~~aGlP~~~~~~v~g~~~-----~~~~~l~~~~~id~v~f--TGs----~~~g~~v~~~aa~--~~~~~~l 225 (453)
T cd07115 159 SALRIAELMAEAGFPAGVLNVVTGFGE-----VAGAALVEHPDVDKITF--TGS----TAVGRKIMQGAAG--NLKRVSL 225 (453)
T ss_pred HHHHHHHHHHhcCcCchheEEEecCch-----hHHHHHhcCCCCCEEEE--ECc----HHHHHHHHHHHhh--cCCeEEE
Confidence 345566888888765332222333221 23466788999998773 443 3455666655544 3456554
Q ss_pred EeCC
Q psy12143 387 RLQG 390 (443)
Q Consensus 387 ~~~g 390 (443)
-++|
T Consensus 226 ElgG 229 (453)
T cd07115 226 ELGG 229 (453)
T ss_pred ecCC
Confidence 4444
No 295
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=21.20 E-value=7e+02 Score=24.40 Aligned_cols=71 Identities=15% Similarity=0.047 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCc
Q psy12143 331 GATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKI 407 (443)
Q Consensus 331 ~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~ 407 (443)
...++........++++=+.|-+++..+.+...-..-|+.+ .++ .++|.++..-++.. ...+.|++.|+-+
T Consensus 42 Km~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~---l~~--~~iP~IvI~D~p~~-K~~d~l~~~g~GY 112 (277)
T PRK00994 42 KMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPGPKKAREI---LKA--AGIPCIVIGDAPGK-KVKDAMEEQGLGY 112 (277)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCchHHHHH---HHh--cCCCEEEEcCCCcc-chHHHHHhcCCcE
Confidence 34456667677777655555666665554432223344444 333 46787776544421 1236788888654
No 296
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=21.16 E-value=4.6e+02 Score=27.50 Aligned_cols=113 Identities=17% Similarity=0.066 Sum_probs=56.1
Q ss_pred cEEEEEcchhHHHHHHHHHHHcC------CCCCCe--eeecC----CCCHHHHHHHHHHHHcCCCccEEEEEccCCCCCh
Q psy12143 297 SIGCLVNGAGLAMATMDIIKLHG------GEPANF--LDVGG----GATAAQVKEAFKIITADPKVCAIMVNIFGGIMRC 364 (443)
Q Consensus 297 ~iaiitngGG~g~la~D~~~~~G------~~~~NP--vDl~g----~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~ 364 (443)
+|.||.+||. -...+..+...+ ..|+|+ ..... ..+.......++. +++-++|.|++ +. .
T Consensus 6 kvLviG~g~r-ehal~~~~~~~~~~~~~~~~pgn~g~~~~~~~~~~~~~~~d~~~l~~~-a~~~~iD~Vv~---g~---E 77 (426)
T PRK13789 6 KVLLIGSGGR-ESAIAFALRKSNLLSELKVFPGNGGFPDDELLPADSFSILDKSSVQSF-LKSNPFDLIVV---GP---E 77 (426)
T ss_pred EEEEECCCHH-HHHHHHHHHhCCCCCEEEEECCchHHhccccccccCcCcCCHHHHHHH-HHHcCCCEEEE---CC---c
Confidence 5777765554 455556666665 235565 21110 1111223444443 34557898885 22 1
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEEe-----CCCCHHHHHHHHHHCCCCc---ccCCCHHHHHHH
Q psy12143 365 DVIAEGIIAAAQELSLKIPIICRL-----QGTNVDDAKVLIASAAMKI---LPCDNLDEAARL 419 (443)
Q Consensus 365 ~~~a~~i~~~~~~~~~~kpiv~~~-----~g~~~~~~~~~L~~~GiP~---~~f~s~e~Av~a 419 (443)
+-...++.+.+++. ..|++.-. .-.+-...++.|.++|||+ ..|.+.+++.+.
T Consensus 78 ~~l~~glad~~~~~--Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~~ea~~~ 138 (426)
T PRK13789 78 DPLVAGFADWAAEL--GIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEYSSSLSY 138 (426)
T ss_pred hHHHHHHHHHHHHc--CCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEeeCCHHHHHHH
Confidence 33445666666653 45543100 0012233456788888886 235566665543
No 297
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=21.15 E-value=3.1e+02 Score=28.97 Aligned_cols=73 Identities=15% Similarity=0.223 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeC-CCCH--HHHHHHHHHCCCCcccCCC
Q psy12143 336 QVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQ-GTNV--DDAKVLIASAAMKILPCDN 412 (443)
Q Consensus 336 ~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~-g~~~--~~~~~~L~~~GiP~~~f~s 412 (443)
.+...+-.-+.+.+||++++...-+ .|+.-..-|++...+ ...|+|.... .+-. --+-|+....+||. .+.+
T Consensus 323 ~~g~eIa~~Lk~dgVDAVILTstCg--tC~r~~a~m~keiE~--~GiPvv~~~~~~pis~tvGanrivp~~~ip~-PlGn 397 (431)
T TIGR01918 323 QFAKEFVVELKQGGVDAVILTSTUG--TCTRCGATMVKEIER--AGIPVVHMCTVIPIALTVGANRIVPTIAIPH-PLGD 397 (431)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCC--cchhHHHHHHHHHHH--cCCCEEEEeecccHhhhcCccceecccCcCC-CCCC
Confidence 3566666667788999998743322 255555555555555 4689885432 2200 01235666666763 3444
Q ss_pred H
Q psy12143 413 L 413 (443)
Q Consensus 413 ~ 413 (443)
|
T Consensus 398 p 398 (431)
T TIGR01918 398 P 398 (431)
T ss_pred C
Confidence 3
No 298
>cd07100 ALDH_SSADH1_GabD1 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.
Probab=21.12 E-value=8.7e+02 Score=25.22 Aligned_cols=82 Identities=22% Similarity=0.275 Sum_probs=43.3
Q ss_pred CCcEEEEEcc---hhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHH
Q psy12143 295 DGSIGCLVNG---AGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGI 371 (443)
Q Consensus 295 ~g~iaiitng---GG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i 371 (443)
.||-.|+-.| --.+....+.+.+.|....-.-=+.|+. +. ...++++|++|.|.. +|+ ..+.+.|
T Consensus 123 aGN~VV~Kps~~~p~~~~~l~~~l~~aglP~gvv~~v~g~~--~~----~~~l~~~~~i~~v~f--TGs----~~~g~~i 190 (429)
T cd07100 123 AGNTVLLKHASNVPGCALAIEELFREAGFPEGVFQNLLIDS--DQ----VEAIIADPRVRGVTL--TGS----ERAGRAV 190 (429)
T ss_pred cCCEEEEECCCcchHHHHHHHHHHHHcCCCcCcEEEEeCCc--hh----HHHHhcCCCCCEEEE--ECc----HHHHHHH
Confidence 3554444322 2345667788888886543222234432 21 246678999998773 443 2345555
Q ss_pred HHHHHHcCCCCcEEEEeCC
Q psy12143 372 IAAAQELSLKIPIICRLQG 390 (443)
Q Consensus 372 ~~~~~~~~~~kpiv~~~~g 390 (443)
.+.+.+ .-||++.-++|
T Consensus 191 ~~~aa~--~~~~~~lelgG 207 (429)
T cd07100 191 AAEAGK--NLKKSVLELGG 207 (429)
T ss_pred HHHHhh--cCcceEEecCC
Confidence 554443 23555444443
No 299
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=21.11 E-value=7.7e+02 Score=23.93 Aligned_cols=123 Identities=11% Similarity=0.099 Sum_probs=63.6
Q ss_pred cEEEEEcchhHHHHHHHHHHHc-CCCCCCeeeec-----CCCCH---------HHHHHHHHHHHcCCCccEEEEEccCCC
Q psy12143 297 SIGCLVNGAGLAMATMDIIKLH-GGEPANFLDVG-----GGATA---------AQVKEAFKIITADPKVCAIMVNIFGGI 361 (443)
Q Consensus 297 ~iaiitngGG~g~la~D~~~~~-G~~~~NPvDl~-----g~~~~---------~~~~~al~~ll~dp~vd~vlv~i~~~~ 361 (443)
+|+|+...|.+|-..+..+... +.+..--+|-. +.... -+....++.+ ...+|.++.. ..
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l--~~~~DvVIdf--T~- 77 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAV--ETDPDVLIDF--TT- 77 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHh--cCCCCEEEEC--CC-
Confidence 5777776788888888877653 32221112210 10000 0011223333 2346876642 21
Q ss_pred CChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHH--H-HHHHHCCCCcccCCCHHHHHHHHHHHHHHHhH
Q psy12143 362 MRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDA--K-VLIASAAMKILPCDNLDEAARLAVKLSSIVGL 429 (443)
Q Consensus 362 ~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~--~-~~L~~~GiP~~~f~s~e~Av~al~~l~~~~~~ 429 (443)
.+...+ .+..+-+ .++|+|+...|-..++. + +.-++.|+|+.+-.+..-.+..+.++.+....
T Consensus 78 --p~~~~~-~~~~al~--~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~~aa~ 143 (266)
T TIGR00036 78 --PEGVLN-HLKFALE--HGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLEKAAK 143 (266)
T ss_pred --hHHHHH-HHHHHHH--CCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHHHHH
Confidence 222233 3333444 47999976555433332 2 23356789986556777778777777666544
No 300
>cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like. Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde.
Probab=21.08 E-value=8.9e+02 Score=25.21 Aligned_cols=82 Identities=21% Similarity=0.289 Sum_probs=43.6
Q ss_pred CCcEEEEEcc---hhHHHHHHHHHHHcCCCCCCeeee-cCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHH
Q psy12143 295 DGSIGCLVNG---AGLAMATMDIIKLHGGEPANFLDV-GGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEG 370 (443)
Q Consensus 295 ~g~iaiitng---GG~g~la~D~~~~~G~~~~NPvDl-~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~ 370 (443)
.||-.|+-.| -..+....+.+.+.|..+. -+-+ .|+.. ..-+.+.++|.+|.|.. +|+ ..+.+.
T Consensus 146 aGN~VilKps~~~p~t~~~l~~~~~~ag~P~g-~v~~v~g~~~-----~~~~~l~~~~~v~~V~f--tGs----~~~g~~ 213 (451)
T cd07150 146 AGNTVVLKPSEETPVIGLKIAEIMEEAGLPKG-VFNVVTGGGA-----EVGDELVDDPRVRMVTF--TGS----TAVGRE 213 (451)
T ss_pred cCCeEEEECCccCcHHHHHHHHHHHHhCCCcC-cEEEeeCCCc-----HHHHHHhcCCCCCEEEE--ECc----HHHHHH
Confidence 3554444333 2345667788888876532 2222 33221 23466788999998773 443 334555
Q ss_pred HHHHHHHcCCCCcEEEEeCC
Q psy12143 371 IIAAAQELSLKIPIICRLQG 390 (443)
Q Consensus 371 i~~~~~~~~~~kpiv~~~~g 390 (443)
|.+.+.+ +-||++.-++|
T Consensus 214 i~~~aa~--~~~~~~lelGG 231 (451)
T cd07150 214 IAEKAGR--HLKKITLELGG 231 (451)
T ss_pred HHHHHhh--cCCceEeecCC
Confidence 5555444 34555444443
No 301
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=21.02 E-value=3.7e+02 Score=25.70 Aligned_cols=76 Identities=22% Similarity=0.317 Sum_probs=45.6
Q ss_pred cchhHHHHHHH--HHHHcCCC---------CCC---eeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHH
Q psy12143 303 NGAGLAMATMD--IIKLHGGE---------PAN---FLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIA 368 (443)
Q Consensus 303 ngGG~g~la~D--~~~~~G~~---------~~N---PvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a 368 (443)
.|||.|+.+ | .+..+|.. ..| +.++ -..+.+.+.+-++.+++|-.+|+|.+-..+ ..+.+
T Consensus 2 psggaGi~a-Di~t~~a~G~~~~~v~Talt~qn~~~~~~~-~~~~~~~~~~ql~~~~~~~~~~aikiG~l~----~~~~v 75 (246)
T PF08543_consen 2 PSGGAGIQA-DIKTISALGVHGCPVPTALTSQNTYGVFDI-EPVDSEMIKAQLDALLEDMKFDAIKIGYLG----SAEQV 75 (246)
T ss_dssp TTSSSHHHH-HHHHHHHTTEEEEEEEEEEEEEETTEEEEE-EE--HHHHHHHHHHHHHTSC-SEEEE-S-S----SHHHH
T ss_pred CCchHHHHH-HHHHHHHcCCccceEeEEEEecCCcceEEE-EECCHHHHHHHHHHhcccccccEEEEcccC----Cchhh
Confidence 478888855 5 56777732 122 2222 244456688889999999999999973322 24566
Q ss_pred HHHHHHHHHcCCCCcEEE
Q psy12143 369 EGIIAAAQELSLKIPIIC 386 (443)
Q Consensus 369 ~~i~~~~~~~~~~kpiv~ 386 (443)
+.|.+..+. .+.|+|+
T Consensus 76 ~~i~~~l~~--~~~~vV~ 91 (246)
T PF08543_consen 76 EIIADFLKK--PKIPVVL 91 (246)
T ss_dssp HHHHHHHHH--TTTEEEE
T ss_pred hhHHHHHhc--cCCCEEE
Confidence 777777755 3456664
No 302
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=21.02 E-value=3.6e+02 Score=25.38 Aligned_cols=62 Identities=19% Similarity=0.120 Sum_probs=34.5
Q ss_pred HHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCC
Q psy12143 313 DIIKLHGGEPANFLDVGGGATAAQVKEAFKIIT-ADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLK 381 (443)
Q Consensus 313 D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll-~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~ 381 (443)
+++.++|.+.....-..++.+.+...+.+..++ +.+.+++|++. .+.+|.++.+++++.+..
T Consensus 143 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a~g~~~~l~~~g~~ 205 (269)
T cd06297 143 QALKDAGRPFSPDLLAITDHSEEGGRLAMRHLLEKASPPLAVFAS-------ADQQALGALQEAVELGLT 205 (269)
T ss_pred HHHHHcCCCCChhhEEeCCCChhhHHHHHHHHHcCCCCCcEEEEc-------CcHHHHHHHHHHHHcCCC
Confidence 445555543211111223333333344555555 45678998862 367888999998886543
No 303
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=20.83 E-value=1.8e+02 Score=29.60 Aligned_cols=67 Identities=18% Similarity=0.220 Sum_probs=38.3
Q ss_pred HHHHHHHHH-CCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEe--CCHHHHHHHHHH
Q psy12143 39 HVSYTLLKE-GGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMV--DTPEEAEEVAGK 115 (443)
Q Consensus 39 ~~ak~lL~~-~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~--~s~ee~~~a~~~ 115 (443)
..++.+|.+ .-+|.+++..+.++++.....+.+. -+|+|+....+|+ |+.++ .|. |.++.+++
T Consensus 254 ~~~r~~LgeellL~~VpT~~cg~~~~~~~Vl~~l~--~lvvKp~~g~gg~-----------~~~~G~~~s~-e~~~~~~~ 319 (330)
T PF04174_consen 254 RMIRYYLGEELLLPNVPTWWCGDPEDREYVLANLD--ELVVKPADGYGGK-----------GVYIGPKLSA-ERRALRAE 319 (330)
T ss_dssp HHHHHHH-S--SSEE---EETTSHHHHHHHHHSGG--GEEEEE-------------------EEEGGG--H-HHHHHHHH
T ss_pred HHHHHHcCCCcccCCCCcEeCCCHHHHHHHHhchh--hcEEEecCCCCCC-----------cceeCCcCCH-HHHHHHHH
Confidence 344555433 2346677788888999999999987 5999997444332 56675 466 88888888
Q ss_pred Hhhc
Q psy12143 116 MIGD 119 (443)
Q Consensus 116 l~~~ 119 (443)
|...
T Consensus 320 I~~~ 323 (330)
T PF04174_consen 320 ILAR 323 (330)
T ss_dssp HHHS
T ss_pred HHhC
Confidence 7543
No 304
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.67 E-value=3.2e+02 Score=25.48 Aligned_cols=61 Identities=21% Similarity=0.143 Sum_probs=34.5
Q ss_pred HHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCC
Q psy12143 313 DIIKLHGGEPANFLDVGGGATAAQVKEAFKIIT-ADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSL 380 (443)
Q Consensus 313 D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll-~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~ 380 (443)
+.+..+|.+.....-..++.+.+...+.++.++ +.|.++++++. .+.+|.++++++++.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a~~~~~~l~~~g~ 202 (270)
T cd06296 141 AALAEAGIPVDPALVREGDFSTESGFRAAAELLALPERPTAIFAG-------NDLMALGVYEAARERGL 202 (270)
T ss_pred HHHHHcCCCCChHHheeCCCCHHHHHHHHHHHHhCCCCCcEEEEc-------CcHHHHHHHHHHHHhCC
Confidence 344444443322222345555554334444444 45788988852 25678888898888654
No 305
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=20.54 E-value=8.6e+02 Score=24.29 Aligned_cols=80 Identities=21% Similarity=0.238 Sum_probs=49.5
Q ss_pred CcEEEEEcch-hHH-----HHHHHHHHHcCCCC-CCeeeecCCCCHHHHHHHHHHHH-cCCC-ccEEEEEccCCCCChHH
Q psy12143 296 GSIGCLVNGA-GLA-----MATMDIIKLHGGEP-ANFLDVGGGATAAQVKEAFKIIT-ADPK-VCAIMVNIFGGIMRCDV 366 (443)
Q Consensus 296 g~iaiitngG-G~g-----~la~D~~~~~G~~~-~NPvDl~g~~~~~~~~~al~~ll-~dp~-vd~vlv~i~~~~~~~~~ 366 (443)
.+|++++..- ... --.-+++..+|... ...+ ..++.+.+...+++..++ ..+. .++||+. .|.
T Consensus 176 ~~i~~i~~~~~~~~~~~R~~Gf~~al~~~~~~~~~~~i-~~~~~~~~~g~~~~~~ll~~~~~~ptAif~~-------nD~ 247 (333)
T COG1609 176 RRIAFIGGPLDSSASRERLEGYRAALREAGLPINPEWI-VEGDFSEESGYEAAERLLARGEPRPTAIFCA-------NDL 247 (333)
T ss_pred ceEEEEeCCCccccHhHHHHHHHHHHHHCCCCCCcceE-EecCCChHHHHHHHHHHHhcCCCCCcEEEEc-------CcH
Confidence 4588887653 111 12346777777665 3333 334556666555555555 4444 8999962 378
Q ss_pred HHHHHHHHHHHcCCCCc
Q psy12143 367 IAEGIIAAAQELSLKIP 383 (443)
Q Consensus 367 ~a~~i~~~~~~~~~~kp 383 (443)
+|-++.+++++.+...|
T Consensus 248 ~Alg~l~~~~~~g~~vP 264 (333)
T COG1609 248 MALGALRALRELGLRVP 264 (333)
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 99999998888765566
No 306
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=20.14 E-value=2.4e+02 Score=26.57 Aligned_cols=49 Identities=18% Similarity=0.084 Sum_probs=28.1
Q ss_pred ccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCccc
Q psy12143 357 IFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILP 409 (443)
Q Consensus 357 i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~~ 409 (443)
+.|.+++. +.|+++++.-..+--|.++........++++-+++|||++.
T Consensus 7 aSG~GSNl----qaiida~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~ 55 (200)
T COG0299 7 ASGNGSNL----QAIIDAIKGGKLDAEIVAVISDKADAYALERAAKAGIPTVV 55 (200)
T ss_pred EeCCcccH----HHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEE
Confidence 34445554 66677666311122344444444345678888899999755
No 307
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=20.08 E-value=2.1e+02 Score=29.50 Aligned_cols=46 Identities=17% Similarity=0.118 Sum_probs=32.9
Q ss_pred HHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q psy12143 313 DIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFG 359 (443)
Q Consensus 313 D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~ 359 (443)
-+|++.|... --+.+..+.+.+.+.+.++.+-+||+||+|+|..|.
T Consensus 126 K~~e~~GI~~-~~~~lpe~~te~ell~~I~~LN~D~~V~GIlVQlPL 171 (364)
T PLN02616 126 KACDSVGINS-FEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPL 171 (364)
T ss_pred HHHHHcCCEE-EEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCC
Confidence 3566666442 223455677777788999999999999999996553
No 308
>cd07119 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like. Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.
Probab=20.04 E-value=9.4e+02 Score=25.41 Aligned_cols=82 Identities=17% Similarity=0.225 Sum_probs=45.2
Q ss_pred CCcEEEEEcch---hHHHHHHHHHHHcCCCCCCeeee-cCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHH
Q psy12143 295 DGSIGCLVNGA---GLAMATMDIIKLHGGEPANFLDV-GGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEG 370 (443)
Q Consensus 295 ~g~iaiitngG---G~g~la~D~~~~~G~~~~NPvDl-~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~ 370 (443)
.||-.|+-.|- ..+...++++.++|..+. -+-+ .|+. ....+.+.++|.+|.|.. +|+ ..+.+.
T Consensus 161 aGN~VilKps~~~p~~~~~l~~~~~~aGlP~g-v~~~v~g~~-----~~~~~~l~~~~~v~~V~f--TGs----~~~g~~ 228 (482)
T cd07119 161 AGNTVVIKPSEVTPLTTIALFELIEEAGLPAG-VVNLVTGSG-----ATVGAELAESPDVDLVSF--TGG----TATGRS 228 (482)
T ss_pred cCCEEEEECCccccHHHHHHHHHHHHcCCCcC-cEEEEecCc-----HHHHHHHhcCCCCCEEEE--ECc----HHHHHH
Confidence 45544443332 345677888888886532 2222 2321 123467889999998873 443 345566
Q ss_pred HHHHHHHcCCCCcEEEEeCC
Q psy12143 371 IIAAAQELSLKIPIICRLQG 390 (443)
Q Consensus 371 i~~~~~~~~~~kpiv~~~~g 390 (443)
|.+.+.+ ..||++.-++|
T Consensus 229 i~~~aa~--~~~~~~lElGG 246 (482)
T cd07119 229 IMRAAAG--NVKKVALELGG 246 (482)
T ss_pred HHHHHHh--cCCcEEEECCC
Confidence 6665554 34555544444
Done!