Query psy12143
Match_columns 443
No_of_seqs 251 out of 2178
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 19:51:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12143.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12143hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fp4_B Succinyl-COA ligase [GD 100.0 2.9E-79 9.8E-84 626.9 43.7 391 34-424 1-392 (395)
2 2nu8_B SCS-beta, succinyl-COA 100.0 1.9E-77 6.4E-82 612.8 43.8 383 34-424 1-385 (388)
3 3ufx_B Succinyl-COA synthetase 100.0 3.1E-78 1E-82 620.0 35.2 374 34-425 1-375 (397)
4 3mwd_A ATP-citrate synthase; A 100.0 7E-67 2.4E-71 537.4 23.8 370 34-424 4-418 (425)
5 3pff_A ATP-citrate synthase; p 100.0 3.5E-62 1.2E-66 534.4 25.3 358 34-411 4-406 (829)
6 1wr2_A Hypothetical protein PH 100.0 1.6E-34 5.3E-39 276.9 22.3 207 31-260 15-237 (238)
7 2csu_A 457AA long hypothetical 99.9 8.4E-23 2.9E-27 213.1 15.9 259 148-427 139-448 (457)
8 3dmy_A Protein FDRA; predicted 99.7 4.9E-17 1.7E-21 169.4 11.9 152 263-425 213-413 (480)
9 3aw8_A PURK, phosphoribosylami 99.4 5.6E-13 1.9E-17 134.4 11.5 105 34-166 93-197 (369)
10 3k5i_A Phosphoribosyl-aminoimi 99.4 1.3E-12 4.6E-17 133.8 12.2 103 34-166 120-225 (403)
11 4e4t_A Phosphoribosylaminoimid 99.4 2.4E-12 8.1E-17 132.7 12.0 162 34-242 130-305 (419)
12 3q2o_A Phosphoribosylaminoimid 99.4 5.6E-12 1.9E-16 128.2 14.7 105 34-166 109-213 (389)
13 3mjf_A Phosphoribosylamine--gl 99.3 4.5E-12 1.5E-16 131.1 12.9 104 34-157 104-207 (431)
14 3orq_A N5-carboxyaminoimidazol 99.3 2.3E-12 7.8E-17 130.8 9.6 103 35-166 108-211 (377)
15 3lp8_A Phosphoribosylamine-gly 99.3 1.1E-11 3.6E-16 128.7 14.1 104 34-157 120-223 (442)
16 3jrx_A Acetyl-COA carboxylase 99.3 5.7E-12 2E-16 134.8 11.7 106 36-166 179-313 (587)
17 3ouz_A Biotin carboxylase; str 99.3 9.4E-12 3.2E-16 128.8 12.7 110 36-166 118-229 (446)
18 3glk_A Acetyl-COA carboxylase 99.3 5.8E-12 2E-16 133.8 10.1 107 35-166 162-297 (540)
19 2cqy_A Propionyl-COA carboxyla 99.3 5.6E-13 1.9E-17 110.4 1.4 98 36-152 7-106 (108)
20 3eth_A Phosphoribosylaminoimid 99.3 4.7E-12 1.6E-16 127.8 8.0 100 35-166 77-178 (355)
21 2z04_A Phosphoribosylaminoimid 99.3 2.3E-12 7.9E-17 129.6 5.2 104 34-166 89-193 (365)
22 1a9x_A Carbamoyl phosphate syn 99.2 1.9E-11 6.5E-16 139.6 11.8 106 36-166 127-232 (1073)
23 1kjq_A GART 2, phosphoribosylg 99.2 2.2E-11 7.6E-16 123.3 10.9 102 35-157 110-212 (391)
24 4eg0_A D-alanine--D-alanine li 99.2 1.5E-10 5E-15 114.4 16.3 105 35-166 105-213 (317)
25 1ulz_A Pyruvate carboxylase N- 99.2 5.2E-11 1.8E-15 123.2 13.0 109 36-165 113-223 (451)
26 2dzd_A Pyruvate carboxylase; b 99.2 5.4E-11 1.8E-15 123.6 12.6 108 35-163 118-227 (461)
27 2vpq_A Acetyl-COA carboxylase; 99.2 6.9E-11 2.4E-15 122.3 12.8 109 36-165 113-223 (451)
28 3e5n_A D-alanine-D-alanine lig 99.2 2.9E-10 9.8E-15 115.9 17.1 96 36-157 158-257 (386)
29 2dwc_A PH0318, 433AA long hypo 99.2 4.3E-11 1.5E-15 123.2 10.9 101 35-156 118-219 (433)
30 4fu0_A D-alanine--D-alanine li 99.2 7.2E-11 2.5E-15 118.9 12.2 96 36-157 138-236 (357)
31 2w70_A Biotin carboxylase; lig 99.2 4.4E-11 1.5E-15 123.7 10.7 109 36-165 114-225 (449)
32 1w96_A ACC, acetyl-coenzyme A 99.2 8.9E-11 3E-15 125.1 13.2 105 35-164 171-301 (554)
33 4dim_A Phosphoribosylglycinami 99.2 1E-10 3.5E-15 119.0 11.9 97 35-155 107-203 (403)
34 3n6r_A Propionyl-COA carboxyla 99.1 1.9E-11 6.6E-16 133.1 4.3 111 35-166 113-225 (681)
35 1a9x_A Carbamoyl phosphate syn 99.1 1.7E-10 5.7E-15 131.8 11.3 99 36-157 673-771 (1073)
36 3vmm_A Alanine-anticapsin liga 99.1 2.4E-10 8.3E-15 119.5 11.6 110 34-157 136-258 (474)
37 1vkz_A Phosphoribosylamine--gl 99.1 6.3E-10 2.2E-14 114.0 13.0 104 34-157 103-206 (412)
38 3vot_A L-amino acid ligase, BL 99.1 1.6E-10 5.4E-15 118.7 8.2 105 35-156 110-214 (425)
39 3u9t_A MCC alpha, methylcroton 99.1 3.3E-11 1.1E-15 131.2 3.1 169 36-242 140-320 (675)
40 3se7_A VANA; alpha-beta struct 99.1 1.8E-10 6.3E-15 115.3 8.0 94 35-156 130-223 (346)
41 3i12_A D-alanine-D-alanine lig 99.0 5.2E-10 1.8E-14 113.0 10.4 97 35-157 138-238 (364)
42 2qf7_A Pyruvate carboxylase pr 99.0 1.3E-10 4.4E-15 133.2 6.0 169 36-242 133-314 (1165)
43 2xcl_A Phosphoribosylamine--gl 99.0 1.4E-09 4.9E-14 111.3 12.6 103 35-157 100-202 (422)
44 3va7_A KLLA0E08119P; carboxyla 99.0 1.4E-10 4.9E-15 133.1 5.4 110 36-166 143-253 (1236)
45 2yw2_A Phosphoribosylamine--gl 99.0 2.1E-09 7.1E-14 110.2 13.2 101 36-156 101-201 (424)
46 2yrx_A Phosphoribosylglycinami 99.0 1.9E-09 6.5E-14 111.7 12.9 102 36-157 122-223 (451)
47 3ln6_A Glutathione biosynthesi 99.0 6.6E-10 2.3E-14 122.0 9.5 112 37-176 484-604 (750)
48 3ax6_A Phosphoribosylaminoimid 99.0 3.8E-10 1.3E-14 114.1 7.0 90 35-157 98-187 (380)
49 3hbl_A Pyruvate carboxylase; T 99.0 1.3E-10 4.5E-15 132.9 3.3 169 36-242 117-296 (1150)
50 2ip4_A PURD, phosphoribosylami 99.0 2.5E-09 8.7E-14 109.4 11.7 97 36-156 100-196 (417)
51 2qk4_A Trifunctional purine bi 99.0 3.4E-09 1.2E-13 109.7 12.6 101 36-156 127-228 (452)
52 1ehi_A LMDDL2, D-alanine:D-lac 99.0 2.9E-09 9.9E-14 108.0 11.8 96 36-156 134-233 (377)
53 3k3p_A D-alanine--D-alanine li 98.9 3.2E-09 1.1E-13 108.1 11.2 95 36-156 160-259 (383)
54 3tqt_A D-alanine--D-alanine li 98.9 4.2E-09 1.4E-13 106.8 11.0 95 36-156 139-238 (372)
55 3r5x_A D-alanine--D-alanine li 98.9 2.1E-09 7.1E-14 105.2 7.5 96 35-156 95-191 (307)
56 2i87_A D-alanine-D-alanine lig 98.9 8.4E-09 2.9E-13 103.8 12.0 95 36-156 128-229 (364)
57 3lwb_A D-alanine--D-alanine li 98.8 4.6E-09 1.6E-13 106.5 7.9 96 36-157 150-247 (373)
58 3ln7_A Glutathione biosynthesi 98.8 7.2E-09 2.5E-13 113.7 8.6 95 37-157 489-588 (757)
59 1iow_A DD-ligase, DDLB, D-ALA\ 98.8 2.1E-08 7.2E-13 97.5 9.6 94 35-155 94-195 (306)
60 1e4e_A Vancomycin/teicoplanin 98.7 1.3E-08 4.3E-13 101.7 7.5 94 36-157 131-224 (343)
61 1uc8_A LYSX, lysine biosynthes 98.7 6.1E-09 2.1E-13 99.7 4.3 99 35-156 86-187 (280)
62 2pvp_A D-alanine-D-alanine lig 98.7 2.4E-08 8.2E-13 101.0 7.8 91 36-152 148-243 (367)
63 2fb9_A D-alanine:D-alanine lig 98.7 2.1E-08 7.1E-13 99.4 7.2 93 36-156 117-209 (322)
64 2pn1_A Carbamoylphosphate synt 98.6 1.3E-07 4.4E-12 93.2 9.1 96 35-163 112-209 (331)
65 4ffl_A PYLC; amino acid, biosy 98.5 7.6E-08 2.6E-12 96.5 5.4 81 35-163 101-181 (363)
66 2r7k_A 5-formaminoimidazole-4- 98.3 8.9E-07 3.1E-11 89.3 7.9 92 36-156 123-215 (361)
67 2r85_A PURP protein PF1517; AT 98.2 3.4E-06 1.1E-10 82.8 10.1 93 35-157 98-190 (334)
68 3mwd_B ATP-citrate synthase; A 98.1 2.4E-05 8.1E-10 77.9 12.7 122 294-423 167-314 (334)
69 1z2n_X Inositol 1,3,4-trisphos 98.1 9.2E-06 3.1E-10 79.6 9.5 93 35-156 96-191 (324)
70 3dmy_A Protein FDRA; predicted 97.9 2.8E-05 9.4E-10 81.0 9.9 120 295-425 112-236 (480)
71 1oi7_A Succinyl-COA synthetase 97.9 0.00014 4.6E-09 71.0 14.1 122 295-423 144-286 (288)
72 2fp4_A Succinyl-COA ligase [GD 97.9 3.4E-05 1.2E-09 75.9 8.9 127 295-424 152-299 (305)
73 2yv2_A Succinyl-COA synthetase 97.7 0.00014 4.9E-09 71.2 10.8 122 295-422 151-293 (297)
74 2yv1_A Succinyl-COA ligase [AD 97.7 0.00017 5.9E-09 70.5 10.3 121 295-423 150-291 (294)
75 1i7n_A Synapsin II; synapse, p 97.6 7.2E-05 2.5E-09 73.7 7.2 91 39-157 119-212 (309)
76 2nu8_A Succinyl-COA ligase [AD 97.6 0.00034 1.2E-08 68.1 11.6 121 295-422 144-285 (288)
77 1gsa_A Glutathione synthetase; 97.6 6E-05 2.1E-09 72.8 5.2 89 37-154 124-215 (316)
78 2p0a_A Synapsin-3, synapsin II 97.5 0.00012 4.3E-09 73.0 6.3 91 39-157 136-229 (344)
79 3pff_A ATP-citrate synthase; p 97.4 0.00068 2.3E-08 74.7 11.4 124 294-423 653-800 (829)
80 1pk8_A RAT synapsin I; ATP bin 97.4 0.00021 7.2E-09 73.0 6.7 91 39-157 231-324 (422)
81 2q7d_A Inositol-tetrakisphosph 97.3 0.00013 4.4E-09 73.0 4.8 92 36-157 115-218 (346)
82 3df7_A Putative ATP-grAsp supe 97.3 0.0002 6.8E-09 70.2 5.2 71 35-156 108-178 (305)
83 2csu_A 457AA long hypothetical 97.2 0.0028 9.4E-08 65.7 12.7 114 296-417 150-280 (457)
84 2pbz_A Hypothetical protein; N 97.1 7.6E-05 2.6E-09 73.9 -0.1 80 40-157 101-180 (320)
85 1ydh_A AT5G11950; structural g 86.0 4.2 0.00014 37.5 9.9 122 296-423 40-187 (216)
86 3nq4_A 6,7-dimethyl-8-ribityll 81.1 22 0.00074 30.9 11.8 123 295-427 12-151 (156)
87 1c2y_A Protein (lumazine synth 80.7 16 0.00053 31.9 10.8 123 296-427 14-150 (156)
88 3t7a_A Inositol pyrophosphate 78.7 0.28 9.7E-06 47.9 -1.1 46 36-82 96-154 (330)
89 1hqk_A 6,7-dimethyl-8-ribityll 74.3 19 0.00063 31.3 9.4 122 296-427 13-150 (154)
90 2ehh_A DHDPS, dihydrodipicolin 73.9 44 0.0015 31.7 13.0 100 323-425 10-123 (294)
91 3tla_A MCCF; serine protease, 73.3 8.6 0.00029 38.3 8.0 112 293-413 41-166 (371)
92 1rvv_A Riboflavin synthase; tr 73.2 18 0.0006 31.5 9.0 122 296-427 13-150 (154)
93 1kz1_A 6,7-dimethyl-8-ribityll 72.9 25 0.00087 30.6 9.9 122 296-426 18-156 (159)
94 2yxg_A DHDPS, dihydrodipicolin 72.1 41 0.0014 31.9 12.3 101 322-425 9-123 (289)
95 3rst_A Signal peptide peptidas 70.8 5.4 0.00019 37.0 5.6 56 331-388 28-86 (240)
96 1o5k_A DHDPS, dihydrodipicolin 69.7 38 0.0013 32.4 11.6 99 322-423 21-133 (306)
97 1f6k_A N-acetylneuraminate lya 69.4 47 0.0016 31.5 12.1 102 323-425 12-127 (293)
98 3sr3_A Microcin immunity prote 68.9 12 0.00041 36.7 7.8 67 292-358 10-88 (336)
99 1xky_A Dihydrodipicolinate syn 68.0 74 0.0025 30.3 13.2 101 323-425 21-135 (301)
100 2a33_A Hypothetical protein; s 67.8 22 0.00077 32.4 9.0 123 296-424 44-192 (215)
101 3cpr_A Dihydrodipicolinate syn 66.9 77 0.0026 30.2 13.1 101 323-425 25-139 (304)
102 3flu_A DHDPS, dihydrodipicolin 65.5 71 0.0024 30.3 12.5 101 323-425 16-130 (297)
103 3l21_A DHDPS, dihydrodipicolin 64.7 67 0.0023 30.7 12.1 102 322-425 23-138 (304)
104 1wek_A Hypothetical protein TT 64.4 15 0.00051 33.7 7.1 119 297-423 69-213 (217)
105 3h75_A Periplasmic sugar-bindi 64.3 46 0.0016 31.5 11.0 121 296-427 146-277 (350)
106 3dz1_A Dihydrodipicolinate syn 64.0 76 0.0026 30.3 12.5 102 323-426 17-130 (313)
107 3b4u_A Dihydrodipicolinate syn 64.0 99 0.0034 29.2 13.2 102 323-425 12-127 (294)
108 4e5s_A MCCFLIKE protein (BA_56 63.6 13 0.00046 36.2 7.0 67 292-359 9-88 (331)
109 3h5d_A DHDPS, dihydrodipicolin 63.5 60 0.0021 31.1 11.6 102 322-425 15-131 (311)
110 2lqo_A Putative glutaredoxin R 63.3 25 0.00084 27.4 7.3 67 36-119 15-85 (92)
111 3si9_A DHDPS, dihydrodipicolin 62.0 63 0.0022 31.1 11.4 102 322-425 30-145 (315)
112 2ojp_A DHDPS, dihydrodipicolin 60.9 83 0.0028 29.7 12.0 100 323-424 10-123 (292)
113 2wkj_A N-acetylneuraminate lya 60.6 1.1E+02 0.0037 29.1 12.8 101 323-425 20-134 (303)
114 2i0f_A 6,7-dimethyl-8-ribityll 60.2 75 0.0025 27.5 10.4 119 296-427 13-152 (157)
115 3dbi_A Sugar-binding transcrip 59.8 46 0.0016 31.3 10.0 81 296-383 182-269 (338)
116 4h1h_A LMO1638 protein; MCCF-l 59.7 14 0.00049 35.8 6.4 68 292-359 9-88 (327)
117 3na8_A Putative dihydrodipicol 59.7 63 0.0021 31.0 11.0 103 322-426 32-148 (315)
118 3sbx_A Putative uncharacterize 59.7 55 0.0019 29.2 9.7 119 296-420 43-187 (189)
119 3e96_A Dihydrodipicolinate syn 59.3 59 0.002 31.2 10.7 103 322-427 19-136 (316)
120 3qua_A Putative uncharacterize 58.6 79 0.0027 28.4 10.7 117 297-420 53-196 (199)
121 3s5o_A 4-hydroxy-2-oxoglutarat 57.9 1.1E+02 0.0039 29.0 12.4 102 322-425 22-139 (307)
122 3fkr_A L-2-keto-3-deoxyarabona 57.8 84 0.0029 30.0 11.5 103 322-426 16-135 (309)
123 3qze_A DHDPS, dihydrodipicolin 57.6 82 0.0028 30.2 11.4 102 322-425 31-146 (314)
124 3n6x_A Putative glutathionylsp 57.3 16 0.00055 37.6 6.5 69 51-145 342-412 (474)
125 1t35_A Hypothetical protein YV 56.9 32 0.0011 30.6 7.8 122 296-423 32-179 (191)
126 3qfe_A Putative dihydrodipicol 56.9 1E+02 0.0035 29.6 11.9 100 323-425 19-136 (318)
127 3tak_A DHDPS, dihydrodipicolin 56.9 1.1E+02 0.0037 28.8 12.1 101 323-425 10-124 (291)
128 3qk7_A Transcriptional regulat 56.3 43 0.0015 30.8 9.0 121 296-427 127-258 (294)
129 1di0_A Lumazine synthase; tran 56.3 38 0.0013 29.5 7.8 87 297-388 12-113 (158)
130 1rcu_A Conserved hypothetical 56.2 14 0.00046 33.4 5.1 114 296-422 57-191 (195)
131 3bq9_A Predicted rossmann fold 55.8 33 0.0011 35.0 8.3 127 296-429 174-335 (460)
132 1ejb_A Lumazine synthase; anal 55.4 46 0.0016 29.2 8.3 124 296-427 17-163 (168)
133 4dpp_A DHDPS 2, dihydrodipicol 55.3 84 0.0029 30.9 11.1 113 310-423 53-180 (360)
134 2r8w_A AGR_C_1641P; APC7498, d 55.2 1.2E+02 0.004 29.4 12.1 103 321-425 41-157 (332)
135 2v9d_A YAGE; dihydrodipicolini 54.3 1.2E+02 0.0042 29.4 12.1 101 323-425 40-154 (343)
136 3d8u_A PURR transcriptional re 54.2 96 0.0033 27.7 10.9 81 296-383 121-208 (275)
137 1dbq_A Purine repressor; trans 53.0 86 0.0029 28.3 10.4 81 296-383 127-214 (289)
138 3g1w_A Sugar ABC transporter; 52.8 1.3E+02 0.0046 27.2 12.0 122 296-427 128-258 (305)
139 2yxb_A Coenzyme B12-dependent 52.3 1.1E+02 0.0038 26.1 11.4 121 295-427 18-146 (161)
140 2obx_A DMRL synthase 1, 6,7-di 52.0 39 0.0013 29.3 7.1 88 296-388 12-114 (157)
141 2cby_A ATP-dependent CLP prote 51.2 27 0.00094 31.4 6.4 60 326-390 30-94 (208)
142 2fep_A Catabolite control prot 51.2 92 0.0032 28.4 10.4 81 296-383 134-222 (289)
143 3daq_A DHDPS, dihydrodipicolin 50.1 1.3E+02 0.0043 28.4 11.3 101 323-426 12-126 (292)
144 1qpz_A PURA, protein (purine n 50.1 76 0.0026 29.8 9.8 81 296-383 178-265 (340)
145 3k4h_A Putative transcriptiona 50.0 87 0.003 28.3 9.9 81 296-383 132-219 (292)
146 3bbl_A Regulatory protein of L 49.8 91 0.0031 28.3 10.1 81 296-383 126-215 (287)
147 2c92_A 6,7-dimethyl-8-ribityll 48.2 1.4E+02 0.0047 25.9 10.7 121 296-427 18-153 (160)
148 3kke_A LACI family transcripti 47.3 92 0.0032 28.6 9.7 81 296-383 132-224 (303)
149 3d0c_A Dihydrodipicolinate syn 46.4 1.3E+02 0.0044 28.7 10.7 101 322-425 19-134 (314)
150 3eb2_A Putative dihydrodipicol 45.9 66 0.0023 30.6 8.5 104 322-426 12-128 (300)
151 3brq_A HTH-type transcriptiona 45.6 1.3E+02 0.0044 27.1 10.4 81 296-383 140-227 (296)
152 3ixl_A Amdase, arylmalonate de 45.4 1.1E+02 0.0037 28.1 9.6 101 296-407 118-227 (240)
153 2rgy_A Transcriptional regulat 45.3 96 0.0033 28.2 9.4 81 296-383 129-216 (290)
154 3fwz_A Inner membrane protein 45.0 1.2E+02 0.0042 24.5 9.5 101 294-407 6-121 (140)
155 1yg6_A ATP-dependent CLP prote 44.9 37 0.0013 30.1 6.1 52 335-391 41-94 (193)
156 2r91_A 2-keto-3-deoxy-(6-phosp 44.1 2E+02 0.007 26.8 12.0 99 323-425 8-119 (286)
157 3o9z_A Lipopolysaccaride biosy 43.3 1E+02 0.0035 29.1 9.5 103 297-407 5-126 (312)
158 4b4u_A Bifunctional protein fo 43.2 40 0.0014 32.5 6.4 63 296-359 54-121 (303)
159 2vc6_A MOSA, dihydrodipicolina 43.1 1.6E+02 0.0056 27.6 10.8 99 324-425 11-123 (292)
160 4fs3_A Enoyl-[acyl-carrier-pro 42.2 85 0.0029 28.6 8.4 86 293-386 3-91 (256)
161 2c2x_A Methylenetetrahydrofola 41.2 38 0.0013 32.3 5.8 62 296-358 33-99 (281)
162 3m5v_A DHDPS, dihydrodipicolin 41.1 2.3E+02 0.008 26.6 12.1 101 323-426 17-132 (301)
163 1y7o_A ATP-dependent CLP prote 40.7 46 0.0016 30.2 6.2 51 335-390 60-112 (218)
164 3gyb_A Transcriptional regulat 40.0 2E+02 0.0069 25.6 12.5 78 296-381 119-201 (280)
165 3ngx_A Bifunctional protein fo 39.8 31 0.0011 32.8 4.9 62 295-358 27-93 (276)
166 4fn4_A Short chain dehydrogena 39.7 1.5E+02 0.0052 27.3 9.8 80 291-378 2-82 (254)
167 2o20_A Catabolite control prot 39.7 1.3E+02 0.0046 27.9 9.7 80 296-383 181-266 (332)
168 3a5f_A Dihydrodipicolinate syn 39.3 1.4E+02 0.0048 28.0 9.7 79 323-404 11-96 (291)
169 3zxn_A RSBS, anti-sigma-factor 39.2 1.5E+02 0.005 23.9 8.6 92 326-423 16-117 (123)
170 3oa2_A WBPB; oxidoreductase, s 39.2 1.1E+02 0.0039 28.9 9.1 103 297-407 5-127 (318)
171 2vk2_A YTFQ, ABC transporter p 39.1 73 0.0025 29.3 7.6 79 296-383 129-218 (306)
172 2hsg_A Glucose-resistance amyl 39.1 1.2E+02 0.0042 28.1 9.3 81 296-383 178-266 (332)
173 2rfg_A Dihydrodipicolinate syn 38.9 2.1E+02 0.0072 26.9 10.9 99 324-425 11-123 (297)
174 4ei7_A Plasmid replication pro 38.4 45 0.0015 33.3 6.1 25 294-319 14-38 (389)
175 4g81_D Putative hexonate dehyd 38.4 2.2E+02 0.0076 26.2 10.7 77 293-377 6-83 (255)
176 1b04_A Protein (DNA ligase); D 38.2 36 0.0012 33.1 5.2 37 36-72 232-269 (318)
177 1b0a_A Protein (fold bifunctio 37.6 38 0.0013 32.4 5.2 62 296-358 34-100 (288)
178 2hmc_A AGR_L_411P, dihydrodipi 37.5 1.7E+02 0.0058 28.4 10.1 99 323-424 35-146 (344)
179 1a4i_A Methylenetetrahydrofola 37.0 40 0.0014 32.4 5.3 62 296-358 36-102 (301)
180 3gv0_A Transcriptional regulat 36.9 2.3E+02 0.008 25.4 11.6 81 296-383 128-215 (288)
181 3l07_A Bifunctional protein fo 36.6 53 0.0018 31.3 6.0 62 296-358 35-101 (285)
182 3o38_A Short chain dehydrogena 36.6 1.9E+02 0.0064 26.0 9.9 28 294-321 20-49 (266)
183 3rot_A ABC sugar transporter, 36.5 1.7E+02 0.0058 26.6 9.7 120 295-427 130-262 (297)
184 1zl0_A Hypothetical protein PA 36.2 71 0.0024 30.7 7.0 66 293-359 15-90 (311)
185 1jye_A Lactose operon represso 35.6 2E+02 0.0069 27.0 10.3 79 296-383 180-265 (349)
186 4a26_A Putative C-1-tetrahydro 35.5 52 0.0018 31.6 5.8 62 296-358 38-104 (300)
187 4a5o_A Bifunctional protein fo 35.2 54 0.0018 31.3 5.8 62 296-358 36-102 (286)
188 3cs3_A Sugar-binding transcrip 35.2 1.4E+02 0.0046 26.9 8.7 78 296-383 119-204 (277)
189 3h5o_A Transcriptional regulat 35.1 2.3E+02 0.0079 26.3 10.6 81 296-383 179-266 (339)
190 3kjx_A Transcriptional regulat 34.7 1.3E+02 0.0044 28.2 8.7 81 296-383 186-274 (344)
191 4e4g_A Methylmalonate-semialde 34.6 2.6E+02 0.0088 28.7 11.4 83 295-391 189-274 (521)
192 3c3k_A Alanine racemase; struc 34.4 1.8E+02 0.0061 26.2 9.4 78 296-383 125-211 (285)
193 4fgs_A Probable dehydrogenase 34.3 78 0.0027 29.7 6.8 65 293-357 26-111 (273)
194 3r31_A BADH, betaine aldehyde 34.2 2.4E+02 0.0082 28.9 11.1 83 295-391 177-262 (517)
195 3jvd_A Transcriptional regulat 34.0 1.9E+02 0.0066 26.9 9.8 76 296-383 175-258 (333)
196 3clk_A Transcription regulator 33.8 1.1E+02 0.0038 27.7 7.8 81 296-383 126-212 (290)
197 3bf0_A Protease 4; bacterial, 33.6 36 0.0012 35.9 4.7 56 331-389 321-379 (593)
198 3p2o_A Bifunctional protein fo 33.6 59 0.002 31.0 5.8 62 296-358 34-100 (285)
199 2kln_A Probable sulphate-trans 32.8 1E+02 0.0034 24.9 6.6 81 334-421 30-122 (130)
200 2pcq_A Putative dihydrodipicol 32.1 75 0.0026 29.9 6.4 97 324-425 8-117 (283)
201 3u4j_A NAD-dependent aldehyde 31.9 2.2E+02 0.0074 29.3 10.3 84 295-391 188-274 (528)
202 3uq8_A DNA ligase; adenylated 31.6 57 0.0019 31.7 5.4 36 36-71 236-272 (322)
203 1p9l_A Dihydrodipicolinate red 30.6 1.3E+02 0.0043 27.8 7.5 111 297-426 2-118 (245)
204 3l9w_A Glutathione-regulated p 30.4 3.5E+02 0.012 26.7 11.3 110 297-420 6-131 (413)
205 1weh_A Conserved hypothetical 30.1 1.1E+02 0.0039 26.4 6.7 117 296-422 32-170 (171)
206 3o1i_D Periplasmic protein TOR 29.9 72 0.0024 29.1 5.8 90 329-427 174-264 (304)
207 3g85_A Transcriptional regulat 29.9 1.2E+02 0.0039 27.5 7.2 81 296-383 128-215 (289)
208 3jsl_A DNA ligase; NAD+-depend 29.7 63 0.0022 31.3 5.4 36 36-71 230-266 (318)
209 3viv_A 441AA long hypothetical 29.4 1.6E+02 0.0053 27.0 7.8 47 336-388 26-74 (230)
210 1a4s_A ALDH, betaine aldehyde 29.3 4.6E+02 0.016 26.5 13.1 83 295-391 182-267 (503)
211 1zau_A DNA ligase; AMP; HET: D 29.2 45 0.0015 32.5 4.2 37 36-72 247-284 (328)
212 3b4w_A Aldehyde dehydrogenase; 29.1 3.3E+02 0.011 27.6 11.1 82 295-391 173-258 (495)
213 2d4e_A 5-carboxymethyl-2-hydro 28.7 3E+02 0.01 28.1 10.8 84 295-391 189-275 (515)
214 3k2w_A Betaine-aldehyde dehydr 28.7 2.7E+02 0.0092 28.3 10.3 84 295-391 175-261 (497)
215 3llv_A Exopolyphosphatase-rela 28.4 2.3E+02 0.0077 22.6 9.9 97 297-407 8-119 (141)
216 1t90_A MMSDH, probable methylm 28.3 3.3E+02 0.011 27.5 10.9 82 295-391 168-253 (486)
217 3ed6_A Betaine aldehyde dehydr 28.3 3.3E+02 0.011 27.8 11.0 72 307-391 212-283 (520)
218 3gh1_A Predicted nucleotide-bi 27.9 2.1E+02 0.0071 29.1 8.9 80 351-431 249-339 (462)
219 2p2s_A Putative oxidoreductase 27.8 2.7E+02 0.0091 26.2 9.6 60 340-407 57-120 (336)
220 3uug_A Multiple sugar-binding 27.8 2.7E+02 0.0092 25.4 9.6 90 330-427 181-279 (330)
221 4h3v_A Oxidoreductase domain p 27.6 92 0.0031 29.8 6.3 59 341-407 67-132 (390)
222 1bxs_A Aldehyde dehydrogenase; 27.5 3.6E+02 0.012 27.4 11.1 84 295-391 186-273 (501)
223 3rg8_A Phosphoribosylaminoimid 27.4 3E+02 0.01 23.7 13.0 119 296-428 3-132 (159)
224 3qwd_A ATP-dependent CLP prote 27.4 1.1E+02 0.0038 27.4 6.3 61 326-391 30-95 (203)
225 2o2p_A Formyltetrahydrofolate 27.0 4.2E+02 0.014 27.1 11.4 83 295-391 205-292 (517)
226 2imp_A Lactaldehyde dehydrogen 26.9 2.7E+02 0.0092 28.1 9.9 84 295-391 169-255 (479)
227 3ros_A NAD-dependent aldehyde 26.8 2.8E+02 0.0095 28.1 10.0 71 307-391 165-235 (484)
228 3rh9_A Succinate-semialdehyde 26.8 2.2E+02 0.0076 29.1 9.3 72 307-391 189-260 (506)
229 3ek1_A Aldehyde dehydrogenase; 26.1 3.7E+02 0.013 27.3 10.9 71 307-391 210-281 (504)
230 3ksm_A ABC-type sugar transpor 26.1 3.3E+02 0.011 23.8 10.0 89 330-427 167-258 (276)
231 2xij_A Methylmalonyl-COA mutas 25.9 2.9E+02 0.01 29.9 10.2 117 296-425 605-730 (762)
232 3m9w_A D-xylose-binding peripl 25.9 3.7E+02 0.013 24.3 10.5 123 296-427 124-259 (313)
233 2rjo_A Twin-arginine transloca 25.6 2.4E+02 0.0082 26.1 8.8 76 296-380 137-221 (332)
234 3hs3_A Ribose operon repressor 25.5 1.6E+02 0.0056 26.4 7.4 77 296-383 123-205 (277)
235 2qu7_A Putative transcriptiona 25.4 3.2E+02 0.011 24.3 9.4 79 296-383 123-214 (288)
236 3zwc_A Peroxisomal bifunctiona 25.2 1.8E+02 0.0062 31.4 8.5 80 288-391 21-116 (742)
237 2nuw_A 2-keto-3-deoxygluconate 25.2 4.2E+02 0.014 24.6 11.8 99 324-425 9-120 (288)
238 2xed_A Putative maleate isomer 25.1 1.6E+02 0.0056 27.3 7.3 60 296-356 147-214 (273)
239 3ju8_A Succinylglutamic semial 25.1 3.7E+02 0.013 27.2 10.6 81 295-390 166-251 (490)
240 3miz_A Putative transcriptiona 24.9 1E+02 0.0035 28.2 5.8 81 296-383 132-224 (301)
241 2b99_A Riboflavin synthase; lu 24.8 1.8E+02 0.0061 25.1 6.8 78 305-387 15-98 (156)
242 1o04_A Aldehyde dehydrogenase, 24.6 3.6E+02 0.012 27.3 10.4 84 295-391 185-272 (500)
243 2f6i_A ATP-dependent CLP prote 24.4 1.3E+02 0.0046 27.1 6.3 50 336-391 55-106 (215)
244 3iwj_A Putative aminoaldehyde 24.3 3.7E+02 0.013 27.3 10.4 72 307-391 193-264 (503)
245 1rw1_A Conserved hypothetical 24.3 52 0.0018 26.3 3.2 14 99-112 99-112 (114)
246 3h5t_A Transcriptional regulat 24.3 1.8E+02 0.0061 27.5 7.6 104 311-427 228-336 (366)
247 3jz4_A Succinate-semialdehyde 24.3 3.4E+02 0.012 27.3 10.2 72 307-391 187-258 (481)
248 3r64_A NAD dependent benzaldeh 24.3 3.6E+02 0.012 27.4 10.3 86 295-391 175-264 (508)
249 3l49_A ABC sugar (ribose) tran 24.2 3.4E+02 0.012 24.1 9.4 123 296-427 126-263 (291)
250 1vkm_A Conserved hypothetical 24.2 96 0.0033 29.6 5.3 17 410-426 201-217 (297)
251 3etf_A Putative succinate-semi 24.1 4.9E+02 0.017 25.9 11.2 82 295-390 153-237 (462)
252 4eys_A MCCC family protein; MC 24.0 67 0.0023 31.3 4.5 74 295-371 5-93 (346)
253 2iks_A DNA-binding transcripti 24.0 2.3E+02 0.0079 25.5 8.1 78 296-383 139-224 (293)
254 2ve5_A BADH, betaine aldehyde 23.9 3.9E+02 0.013 26.9 10.5 83 295-390 169-255 (490)
255 3huu_A Transcription regulator 23.7 1.4E+02 0.0047 27.3 6.5 78 296-383 145-229 (305)
256 1uzb_A 1-pyrroline-5-carboxyla 23.2 3.9E+02 0.013 27.2 10.4 86 295-391 200-292 (516)
257 3p2l_A ATP-dependent CLP prote 23.1 1.4E+02 0.0049 26.6 6.2 61 326-391 33-98 (201)
258 3e82_A Putative oxidoreductase 23.0 1.8E+02 0.006 28.0 7.4 78 340-425 58-141 (364)
259 3bf0_A Protease 4; bacterial, 23.0 64 0.0022 33.9 4.4 53 333-388 71-127 (593)
260 3ifg_A Succinate-semialdehyde 22.9 4.2E+02 0.014 26.7 10.5 71 307-391 190-261 (484)
261 3k9c_A Transcriptional regulat 22.7 4.1E+02 0.014 23.7 10.0 80 296-383 127-212 (289)
262 2g1u_A Hypothetical protein TM 22.3 3.2E+02 0.011 22.3 11.0 112 295-421 19-146 (155)
263 3egc_A Putative ribose operon 22.1 1.4E+02 0.0046 27.1 6.1 63 312-381 148-211 (291)
264 4fb5_A Probable oxidoreductase 21.6 1.1E+02 0.0038 29.2 5.6 59 341-407 86-148 (393)
265 2r3b_A YJEF-related protein; p 21.6 47 0.0016 31.9 2.8 26 295-320 44-72 (310)
266 1gud_A ALBP, D-allose-binding 21.6 4.4E+02 0.015 23.6 11.9 120 296-427 134-264 (288)
267 1w3i_A EDA, 2-keto-3-deoxy glu 21.5 5E+02 0.017 24.2 12.0 99 324-425 9-120 (293)
268 3nxk_A Cytoplasmic L-asparagin 21.4 1.3E+02 0.0046 29.1 6.0 77 341-423 238-317 (334)
269 3qan_A 1-pyrroline-5-carboxyla 21.4 3.9E+02 0.013 27.4 10.0 74 307-391 214-291 (538)
270 2kok_A Arsenate reductase; bru 21.4 69 0.0024 25.8 3.4 14 99-112 104-117 (120)
271 3evn_A Oxidoreductase, GFO/IDH 21.3 1.7E+02 0.0057 27.6 6.7 60 340-407 58-121 (329)
272 3k1t_A Glutamate--cysteine lig 20.4 1.4E+02 0.0047 29.9 5.8 50 76-143 280-332 (432)
273 3ny7_A YCHM protein, sulfate t 20.2 3.2E+02 0.011 21.4 8.2 68 348-419 44-117 (118)
274 3bgk_A SMU.573, putative uncha 20.1 51 0.0018 31.6 2.7 26 295-320 58-86 (311)
No 1
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=100.00 E-value=2.9e-79 Score=626.88 Aligned_cols=391 Identities=51% Similarity=0.803 Sum_probs=367.7
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
|+|+|+++|++|++||||+|++.+++|.+|+.++++++||+|+|+|++..+|||||++|||+..|||+++.|++|+++++
T Consensus 1 m~l~E~~aK~lL~~~GIpvp~~~~~~s~~ea~~~a~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~ 80 (395)
T 2fp4_B 1 MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLA 80 (395)
T ss_dssp CBCCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHHH
Confidence 78999999999999999999999999999999999999974699999988999999999998889999999999999999
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCCC
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITV 193 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~~ 193 (443)
+++++....++++++.+..+++++||+|+++++|+|+++.+|+.|++|++++|.+||++||.++.++||++++++++|..
T Consensus 81 ~~~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~iE~va~~~~d~i~~~~idp~~ 160 (395)
T 2fp4_B 81 KQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIE 160 (395)
T ss_dssp HTTTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCHHHHHHHCGGGCEEEECCTTT
T ss_pred HHHhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEccccCceEEEEECCCCccceeccccCCceEEEEecCCCC
Confidence 99987643344555556667899999999999999999999999766999999999999999988889999999999988
Q ss_pred CCCHHHHHHHHHHcCC-chhHHHHHHHHHHHHHhhhhCCCeEEeeeceeEccCCCEEEEeEEEEecCcchhhhhhhhccc
Q psy12143 194 GITKEQALKVADAVGL-KAKRDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDLR 272 (443)
Q Consensus 194 ~l~~~~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~~~~~~lEINPl~v~~~g~~~alDa~i~l~~~a~~rqp~i~~~~ 272 (443)
++++++|++|++.+|+ +.+.+++++++.+||++|.+.++.++|||||+++++|+++++|+++.+|+||.||||++.+++
T Consensus 161 ~l~~~~a~~l~~~lg~~~~~~~~~~~~l~~l~~l~~~~d~~~lEINPl~~~~~g~~~alDaki~~ddnA~~r~~~~~~~~ 240 (395)
T 2fp4_B 161 GIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMD 240 (395)
T ss_dssp CCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEECTTSCEEECSEEEEECGGGGGGCHHHHTTC
T ss_pred CCCHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHhhhCCeEEEEeeeEEEcCCCCEEEEEeEEEecccccccCcchhhhc
Confidence 9999999999999999 889999999999999999999999999999999998779999999999999999999999999
Q ss_pred CCccCCHHHHHHhcCCCeEeecCCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccE
Q psy12143 273 DWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCA 352 (443)
Q Consensus 273 ~~~~~~~~e~~a~~~~l~~~~~~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~ 352 (443)
+..++++.|.++.+++|+|++++||||+|+||||++|+++|++..+|++|+||+|++|+++.+.+.++++++++||+||+
T Consensus 241 d~~~~~~~e~~a~~~~l~yv~l~G~Ig~~~nGaGlam~t~D~i~~~Gg~paNflDvgG~a~~e~~~~al~~il~d~~v~~ 320 (395)
T 2fp4_B 241 DKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQVYQAFKLLTADPKVEA 320 (395)
T ss_dssp CCTTSCHHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHTTCCBCEEEECCSSCCHHHHHHHHHHHHHCTTCCE
T ss_pred CCCccChhhhhHHHcCCceeccCCeEEEEecCchHHHHHHHHHHHcCCCcCCcEEECCCCCHHHHHHHHHHHhCCCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHH
Q psy12143 353 IMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLS 424 (443)
Q Consensus 353 vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~ 424 (443)
||||+++++++|+.+|++|++++++.+.+||||+|+.|++.++++++|++.|+|++.|+++++|++++.+++
T Consensus 321 ilvni~ggi~~~d~vA~gii~a~~~~~~~~Pivvrl~G~n~~~g~~~L~~~gl~~~~~~~~~~Aa~~~v~~~ 392 (395)
T 2fp4_B 321 ILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAAKKAVASV 392 (395)
T ss_dssp EEEEEEESSSCHHHHHHHHHHHHHHHTCCSCEEEEEEETTHHHHHHHHHHTCSCCEECSSHHHHHHHHHHTT
T ss_pred EEEEecCCccCcHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHHHCCCceEeCCCHHHHHHHHHHHh
Confidence 999999999999999999999999876789999999999999999999999999955699999999988765
No 2
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=100.00 E-value=1.9e-77 Score=612.81 Aligned_cols=383 Identities=44% Similarity=0.688 Sum_probs=360.5
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCe-EEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKD-IVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEV 112 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~P-vVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a 112 (443)
|+|+|+++|++|++||||+|++.+++|.+|+.++++++|| | +|+|++...+|||++ |||+++.|++|++++
T Consensus 1 m~l~E~~aK~lL~~~GIpvp~~~~~~s~eea~~aa~~lG~-P~vVvK~~~~~ggrg~~-------gGV~l~~s~eel~~a 72 (388)
T 2nu8_B 1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGA-GPWVVKCQVHAGGRGKA-------GGVKVVNSKEDIRAF 72 (388)
T ss_dssp CBCCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHCS-SCEEEEECCSSSCTTTT-------TCEEEECSHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCcCCCCeeEECCHHHHHHHHHHhCC-CeEEEEEecCCCCCCcc-------CCEEEECCHHHHHHH
Confidence 7899999999999999999999999999999999999999 9 999999877888887 999999999999999
Q ss_pred HHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCC
Q psy12143 113 AGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDIT 192 (443)
Q Consensus 113 ~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~ 192 (443)
+++++++...++++++.+..+++++||+|+++++|+|+++.+|+.|++|++++|.+||+++|.+++++||++++++++|.
T Consensus 73 ~~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~~~g~pvi~~~~~GGv~iE~v~~~~pd~i~~~~i~P~ 152 (388)
T 2nu8_B 73 AENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPL 152 (388)
T ss_dssp HHHHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECBTT
T ss_pred HHHHhhhhhhccccCCCCcccceEEEEEccccCCcEEEEEEEecccCCcEEEEeCCCCcchhhccccCCceEEEEecCCC
Confidence 99998764333455555555789999999998999999999999974599999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHcCC-chhHHHHHHHHHHHHHhhhhCCCeEEeeeceeEccCCCEEEEeEEEEecCcchhhhhhhhcc
Q psy12143 193 VGITKEQALKVADAVGL-KAKRDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDL 271 (443)
Q Consensus 193 ~~l~~~~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~~~~~~lEINPl~v~~~g~~~alDa~i~l~~~a~~rqp~i~~~ 271 (443)
.++++.+|++|++.+|+ +.+.+++++++.+||++|.+.++.++|||||+++++|+++++||++.+|+||.||||+|.++
T Consensus 153 ~gl~~~~a~~~~~~lG~~~~~~~~~~~~l~~l~~~~~~~d~~~lEINPl~~~~~g~~~alDaki~~dd~a~~r~~~~~~~ 232 (388)
T 2nu8_B 153 TGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLREM 232 (388)
T ss_dssp TBCCHHHHHHHHHHTTCCTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESCCEEEECGGGGGGCHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCEEEEEecceEEcCCCCEEEEeeEEEeCCchhccCcchhhh
Confidence 89999999999999999 89999999999999999999999999999999999988999999999999999999999999
Q ss_pred cCCccCCHHHHHHhcCCCeEeecCCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCcc
Q psy12143 272 RDWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVC 351 (443)
Q Consensus 272 ~~~~~~~~~e~~a~~~~l~~~~~~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd 351 (443)
+++.++++.|.++.+++|+|++++||||+|+||||++|+++|++..+|++|+||+|++|+++.+.+.++++++++||+||
T Consensus 233 ~~~~~~~~~e~~a~~~~l~yv~l~G~Ig~~~nGaGl~m~t~D~i~~~Gg~~aNflD~gG~a~~~~~~~~~~~il~d~~v~ 312 (388)
T 2nu8_B 233 RDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVK 312 (388)
T ss_dssp CCGGGSCHHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHTTCCBCEEEECCSCCCHHHHHHHHHHHHTSTTCC
T ss_pred cCccccChhHHHHHHhcCCccCCCCEEEEEeCCCchhhhhhHHHHHcCCCcCceeEecCCCCHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHH
Q psy12143 352 AIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLS 424 (443)
Q Consensus 352 ~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~ 424 (443)
+||||+++++++|+.+|++|++++++.+.+||||+|+.|++.++++++|++.|+|++.++++++|++++.+++
T Consensus 313 ~ilvni~ggi~~~~~vA~gii~a~~~~~~~~pivvrl~G~n~~~g~~~l~~~g~~~~~~~~~~~aa~~~v~~~ 385 (388)
T 2nu8_B 313 AVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAV 385 (388)
T ss_dssp EEEEEEESCSSCHHHHHHHHHHHHHHHTCCSCEEEEEESTTHHHHHHHHHTTCSSEEECSSHHHHHHHHHHHT
T ss_pred EEEEEecCCcCCchHHHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHHHHCCCceecCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999876789999999999999999999999999955599999999988775
No 3
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=100.00 E-value=3.1e-78 Score=620.02 Aligned_cols=374 Identities=41% Similarity=0.634 Sum_probs=352.9
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
|+|+|+++|++|++||||||++.+++|.+|+.++++++|| |||+|+++..+|||++ |||+++.|++|+++++
T Consensus 1 m~L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~aa~~lG~-PvVvKa~~~~ggkg~~-------GGV~l~~s~ee~~~a~ 72 (397)
T 3ufx_B 1 MNLHEYQAKEILARYGVPVPPGKVAYTPEEAKRIAEEFGK-RVVIKAQVHVGGRGKA-------GGVKLADTPQEAYEKA 72 (397)
T ss_dssp CBCCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHTS-CEEEEECCSSSCTTTT-------TCEEEESSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHHcCC-CEEEEEccccCCCCcc-------ceEEEeCCHHHHHHHH
Confidence 7899999999999999999999999999999999999998 9999999877888887 9999999999999999
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCCC
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITV 193 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~~ 193 (443)
++++++.. .|..+++++||+|+++++|+|+++.+|+.|++|+++||.+||+++|.+++.+||.+++++++|..
T Consensus 73 ~~~~~~~~-------~g~~~~~vlVEe~v~~g~El~vgv~~D~~~g~pvi~~s~~GGv~iE~~a~~~pd~i~~~~i~~~~ 145 (397)
T 3ufx_B 73 QAILGMNI-------KGLTVKKVLVAEAVDIAKEYYAGLILDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDPHK 145 (397)
T ss_dssp HHHTTCEE-------TTEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCCSSCHHHHHHHCGGGCEEEECBTTT
T ss_pred HHhhhhhc-------cCCccceEEEEEeecCCeeEEEEEEecCCCCCcEEEEeCCCCccHhhhcccCccceEEEecCCCC
Confidence 99987532 34456899999999999999999999999766999999899999999999999999999888877
Q ss_pred CCCHHHHHHHHHHcCC-chhHHHHHHHHHHHHHhhhhCCCeEEeeeceeEccCCCEEEEeEEEEecCcchhhhhhhhccc
Q psy12143 194 GITKEQALKVADAVGL-KAKRDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDLR 272 (443)
Q Consensus 194 ~l~~~~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~~~~~~lEINPl~v~~~g~~~alDa~i~l~~~a~~rqp~i~~~~ 272 (443)
++++.+|++|++++|+ |. .+++++++.+||++|.+.+.+++|||||+++++|+++|+||+|.+|+||.||||+|..++
T Consensus 146 ~l~~~~a~~~~~~lG~~g~-~~~l~~~l~~l~~l~~~~~~~~lEINPL~~~~~g~~~alDaki~~ddnA~~r~~~~~~~~ 224 (397)
T 3ufx_B 146 GFRPFEAREMVKRAGLEGN-LNKLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALFRHPDLAELR 224 (397)
T ss_dssp BCCHHHHHHHHHHHTCCSC-HHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTSCEEESSCEEEECGGGGGGCHHHHTTH
T ss_pred CCCHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHHHcCCccEEEeeceEECCCCCEEEEEeEEEecCcchhcchhhhhhc
Confidence 8999999999999999 77 999999999999999999889999999999998889999999999999999999999999
Q ss_pred CCccCCHHHHHHhcCCCeEeecCCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccE
Q psy12143 273 DWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCA 352 (443)
Q Consensus 273 ~~~~~~~~e~~a~~~~l~~~~~~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~ 352 (443)
++.++++.|.++.+++|+|++++|||||||||||++++++|++..+|++++||+|++|+++.+.|.++++++++||++|+
T Consensus 225 ~~~~~~~~e~~a~~~~l~yv~l~g~I~ii~Ng~Gl~~~t~D~i~~~G~~~aN~lD~gG~a~~e~~~~al~~~l~d~~v~~ 304 (397)
T 3ufx_B 225 EVEAEHPLEVEASNYGFAYVKLDGNIGIIGNGAGLVMYTLDLVNRVGGKPANFLDIGGGAKADVVYNALKVVLKDPDVKG 304 (397)
T ss_dssp HHHCSSHHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHTTCCBSEEEECCSCCCHHHHHHHHHHHHTCTTCCE
T ss_pred CcccCCHhHHHHHHcCCCcccCCCcEEEEecCccHHHHHHHHHHHcCCCcCCcEecCCCCCHHHHHHHHHHHHcCCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHHH
Q psy12143 353 IMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 353 vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~ 425 (443)
||||+++++++|+.+|++|+++.++.+.+||||+++.|++.++++++|++.|||+ |++|++|++++.++++
T Consensus 305 ilv~i~ggi~~~~~vA~~i~~a~~~~~~~kPvvv~~~G~~~~~~~~~l~~~gip~--~~~~e~Aa~~~~~l~~ 375 (397)
T 3ufx_B 305 VFINIFGGITRADEVAKGVIRALEEGLLTKPVVMRVAGTAEEEAKKLLEGKPVYM--YPTSIEAAKVTVAMKG 375 (397)
T ss_dssp EEEEEEEEEEESHHHHHHHHHHHTTTCCCSCEEEEEEEECHHHHHHHTTTSSEEE--CSSHHHHHHHHHHSCC
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhhCCCCcEEEEccCCCHHHHHHHHHhCCCcc--cCCHHHHHHHHHHHHH
Confidence 9999998899999999999999987655899999998888899999999999999 9999999999987754
No 4
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=100.00 E-value=7e-67 Score=537.41 Aligned_cols=370 Identities=19% Similarity=0.243 Sum_probs=319.6
Q ss_pred cCCCHHHHHHHHHHCCC---C-CC--CeeecC---CHHHHHHHHHHcC-CCeEEEEEeecCCCCCccccccCccCcEEEe
Q psy12143 34 LNVHEHVSYTLLKEGGI---P-VP--PFGVAK---TKKEAGEIAKKLN-IKDIVLKAQVLAGGRGKGAFKGGLKGGVKMV 103 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GI---p-v~--~~~~v~---s~~ea~~~a~~lg-~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~ 103 (443)
..+.||++|+||.+||+ | +. ++..++ |.+|+.++++++| | |||+|+|++.+||||+ |||+++
T Consensus 4 k~i~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~a~~lg~~-pvVvKaqv~~ggRgk~-------GGV~l~ 75 (425)
T 3mwd_A 4 KAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQ-NLVVKPDQLIKRRGKL-------GLVGVN 75 (425)
T ss_dssp EEECHHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCGGGGTS-CEEEEECSSCSCTTTT-------TCCEEE
T ss_pred hhHhHHHHHHHHHHhccccCCccCCcceEEeCCCCCHHHHHHHHHHhCCC-CEEEEeccccCCCCcC-------CeEEEE
Confidence 46899999999999999 4 33 366665 4599999999999 7 9999999988999997 999999
Q ss_pred CCHHHHHHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCC--CeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCC
Q psy12143 104 DTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYP--RKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENP 181 (443)
Q Consensus 104 ~s~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~--g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~ 181 (443)
.|++|+++++++|+++.. ++...+..+.+|+||+|+++ ++|+|+|+++||. ||+++||.+||++||.+++.
T Consensus 76 ~s~eev~~aa~~ml~~~~---~~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~--gpvI~~s~~GGv~IE~vad~-- 148 (425)
T 3mwd_A 76 LTLDGVKSWLKPRLGQEA---TVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATRE--GDYVLFHHEGGVDVGDVDAK-- 148 (425)
T ss_dssp ECHHHHHHHHTTTTTCEE---EETTEEEECCCEEEEECCCCCGGGEEEEEEEEETT--EEEEEEESSCSTTCCSHHHH--
T ss_pred CCHHHHHHHHHHHHhhhh---hccCCCceEEEEEEEecccCCCCceEEEEEEecCC--CCEEEEECCCCccHhHhhcc--
Confidence 999999999999998752 22223445789999999975 5999999999998 89999998999999999864
Q ss_pred CeEEEEecCCCCCCCHHHHH-HHHHHcCC-chhHHHHHHHHHHHHHhhhhCCCeEEeeeceeEccCCCEEEEeEEEEecC
Q psy12143 182 SAILYEPVDITVGITKEQAL-KVADAVGL-KAKRDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDD 259 (443)
Q Consensus 182 d~v~~~~l~p~~~l~~~~a~-~~l~~lg~-g~d~~~l~~~l~~l~~l~~~~~~~~lEINPl~v~~~g~~~alDa~i~l~~ 259 (443)
..+++++|..+++..+++ +++. |+ +.+.+++++++.+||++|.+.+++++|||||+++++| ++|+||++.+|+
T Consensus 149 --~~~~~i~~~~~l~~~~~~~~ll~--g~~~~d~~~la~~l~~L~~lf~d~d~~~lEINPLvvt~~g-v~AlDAki~lDD 223 (425)
T 3mwd_A 149 --AQKLLVGVDEKLNPEDIKKHLLV--HAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAAKVDA 223 (425)
T ss_dssp --SEEEEEETTCCCCHHHHHHTTTT--TSCTTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTE-EEECCEEEEEEG
T ss_pred --cceEecCCccccCHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHhCCccEEEeeeeEEcCCc-eEEEeceeeccc
Confidence 345677777778887774 2322 56 7899999999999999999999999999999999998 999999999999
Q ss_pred cchhhhhh-hhcccCC----ccCCHHHHHHh--------cCCCeEeecCCcEEEEEcchhHHHHHHHHHHHcCC--CCCC
Q psy12143 260 NAEFRQKA-LFDLRDW----SQEDAKEVEAA--------KHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGG--EPAN 324 (443)
Q Consensus 260 ~a~~rqp~-i~~~~~~----~~~~~~e~~a~--------~~~l~~~~~~g~iaiitngGG~g~la~D~~~~~G~--~~~N 324 (443)
||.|||++ |-.++++ ++.++.|.++. +++|+|++++||||+|+||||++|.++|++..+|+ +|+|
T Consensus 224 nA~fR~~~~~~~~~~~~~~~~~~~~~E~~~~e~~a~~~~~~~l~yv~ldG~Ig~mvNGaGlamat~D~i~~~Gg~~~pAN 303 (425)
T 3mwd_A 224 TADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELAN 303 (425)
T ss_dssp GGHHHHHHHHCSCCCCCCSSSCCCHHHHHHHHHHHTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHHTTCGGGBCE
T ss_pred chhhhChhhhhhhhccccccccCChhhhhhhhhhhhhhhccCccEEecCCeEEEEecCchHHHHHHHHHHHcCCCcCCcc
Confidence 99999986 5445554 55678876653 46799999999999999999999999999999999 7999
Q ss_pred eeeecCCCCHHHHHH----HHHHHHcCCCccEEEEEccCCCCChHHHH---HHHHHHHHHc-----CCCCcEEEEeCCCC
Q psy12143 325 FLDVGGGATAAQVKE----AFKIITADPKVCAIMVNIFGGIMRCDVIA---EGIIAAAQEL-----SLKIPIICRLQGTN 392 (443)
Q Consensus 325 PvDl~g~~~~~~~~~----al~~ll~dp~vd~vlv~i~~~~~~~~~~a---~~i~~~~~~~-----~~~kpiv~~~~g~~ 392 (443)
|+|++|+++.+.+++ +|+++++||+|+++||||+|++++|+.+| ++|++++++. ..++|||+|+.|++
T Consensus 304 flD~gG~a~~e~v~~~~~~~l~ii~~d~~vk~i~vnIfGGI~~cd~vA~t~~GIi~A~~~~~~~~~~~~~PivVRl~Gtn 383 (425)
T 3mwd_A 304 YGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPN 383 (425)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHTTSSCCTTCEEEEECBCBCSSSCHHHHHHHHHHHHHHTHHHHHHTTEEEEEECBSTT
T ss_pred eEEecCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCcccHHHHHHHHhHHHHHHHHhhhccccCCCcEEEECCcCC
Confidence 999999999998765 59999999999999999999999999999 9999999975 35899999999999
Q ss_pred HHHHHHHHHHCC----CCcccCCCHHHHHHHHHHHH
Q psy12143 393 VDDAKVLIASAA----MKILPCDNLDEAARLAVKLS 424 (443)
Q Consensus 393 ~~~~~~~L~~~G----iP~~~f~s~e~Av~al~~l~ 424 (443)
.++++++|++.| +|+++| .|+.++..+..++
T Consensus 384 ~~eg~~il~~~g~~lgip~~~~-gpe~~~~~i~~~a 418 (425)
T 3mwd_A 384 YQEGLRVMGEVGKTTGIPIHVF-GTETHMTAIVGMA 418 (425)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEE-CTTSCTTHHHHHH
T ss_pred HHHHHHHHHhCCcccCCceEEe-CccchHHHHHHHH
Confidence 999999999998 999655 4788887776654
No 5
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.5e-62 Score=534.43 Aligned_cols=358 Identities=20% Similarity=0.241 Sum_probs=314.3
Q ss_pred cCCCHHHHHHHHHHCCCC------CCCeeecCC---HHHHHHHHHHcC-CCeEEEEEeecCCCCCccccccCccCcEEEe
Q psy12143 34 LNVHEHVSYTLLKEGGIP------VPPFGVAKT---KKEAGEIAKKLN-IKDIVLKAQVLAGGRGKGAFKGGLKGGVKMV 103 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIp------v~~~~~v~s---~~ea~~~a~~lg-~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~ 103 (443)
..+.||++|+||.+||+| .+++..+++ .+|+.++++++| + |||||+|++.+||||+ |||+++
T Consensus 4 k~i~Ey~aK~ll~~~~~~~~~~~~~~~~~~v~~~~~~~eA~~aa~~lg~~-pvVvKaQv~~GgRGKa-------GGVkL~ 75 (829)
T 3pff_A 4 KAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQ-NLVVKPDQLIKRRGKL-------GLVGVN 75 (829)
T ss_dssp EEECHHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCTHHHHS-CEEEEECSSCSCTTTT-------TCCEEE
T ss_pred hhHhHHHHHHHHHHhCccccccccCCceEEeCCCCCHHHHHHHHHHhCCC-CEEEEecccccCCCcC-------CeEEEE
Confidence 468999999999999999 557777765 588888899998 7 9999999999999998 999999
Q ss_pred CCHHHHHHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCC--CeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCC
Q psy12143 104 DTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYP--RKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENP 181 (443)
Q Consensus 104 ~s~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~--g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~ 181 (443)
.|++|+++++++|+++.. ++...+..+.+|+||+|+++ ++|+|+|+++||. ||+++||.+||++||.+++
T Consensus 76 ~s~eEa~~aa~~iLg~~~---~~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~--gpvIm~s~eGGvdIE~vad--- 147 (829)
T 3pff_A 76 LTLDGVKSWLKPRLGQEA---TVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATRE--GDYVLFHHEGGVDVGDVDA--- 147 (829)
T ss_dssp ECHHHHHHHHTTTTTCEE---EETTEEEECCCEEEEECCCCCGGGEEEEEEEEETT--EEEEEEESSCSTTCCCHHH---
T ss_pred CCHHHHHHHHHHHHHHHH---hhcCCCceEEEEEEEecccCCCccEEEEEEEecCC--CCEEEEECCCCcchhhhhh---
Confidence 999999999999998752 21223445789999999975 5999999999998 8999999899999999985
Q ss_pred CeEEEEecCCCCCCCHHHHH-HHHHHcCC-chhHHHHHHHHHHHHHhhhhCCCeEEeeeceeEccCCCEEEEeEEEEecC
Q psy12143 182 SAILYEPVDITVGITKEQAL-KVADAVGL-KAKRDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDD 259 (443)
Q Consensus 182 d~v~~~~l~p~~~l~~~~a~-~~l~~lg~-g~d~~~l~~~l~~l~~l~~~~~~~~lEINPl~v~~~g~~~alDa~i~l~~ 259 (443)
...+++++|..+++.++++ +++. |+ +.+.++++++|.+||++|.+.+++++|||||+++++| ++|+||+|.+|+
T Consensus 148 -~~~~~~I~p~~gl~~~~a~~~ll~--g~~~~d~~ala~~L~~Ly~lf~d~d~t~lEINPLvvt~dg-v~ALDAKi~lDD 223 (829)
T 3pff_A 148 -KAQKLLVGVDEKLNPEDIKKHLLV--HAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDG-VYVLDLAAKVDA 223 (829)
T ss_dssp -HSEEEEEETTCCCCHHHHHHTTTT--TSCGGGHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEETTE-EEECCCEEEEEG
T ss_pred -hceEEecCCccccCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHHHhCCccEEEeeceEecCCc-eEEEeceeeecc
Confidence 3456788988889998884 3433 56 7899999999999999999999999999999999998 999999999999
Q ss_pred cchhhhhh-hhcccCC----ccCCHHHHHHh--------cCCCeEeecCCcEEEEEcchhHHHHHHHHHHHcCC--CCCC
Q psy12143 260 NAEFRQKA-LFDLRDW----SQEDAKEVEAA--------KHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGG--EPAN 324 (443)
Q Consensus 260 ~a~~rqp~-i~~~~~~----~~~~~~e~~a~--------~~~l~~~~~~g~iaiitngGG~g~la~D~~~~~G~--~~~N 324 (443)
||.|||++ |-.++++ ++.++.|.++. +++|+|++++||||+|+||+|++|.++|++..+|+ +|+|
T Consensus 224 nA~fR~~~~~~~~~~~~~~~~~~~~~E~~~~e~~ak~~a~~~l~yv~ldG~Ig~mvNGaGlamaTmD~I~~~Gg~~~pAN 303 (829)
T 3pff_A 224 TADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELAN 303 (829)
T ss_dssp GGHHHHHHHHCSCCCCCCSSCCCCHHHHHHHHHHHTSSSEEEEEESCTTCSEEECCBSHHHHHHHHHHHHHTTCTTTBCE
T ss_pred chhhhCchhhhhhhccccccccCChhhhhhhhhhhhhccccCccEEecCCeEEeeccCchHHHHHHHHHHHcCCCCCCce
Confidence 99999976 4444544 46677776542 36799999999999999999999999999999999 6999
Q ss_pred eeeecCCCCHHHHHHH----HHHHHcCCCccEEEEEccCCCCChHHHH---HHHHHHHHHc-----CCCCcEEEEeCCCC
Q psy12143 325 FLDVGGGATAAQVKEA----FKIITADPKVCAIMVNIFGGIMRCDVIA---EGIIAAAQEL-----SLKIPIICRLQGTN 392 (443)
Q Consensus 325 PvDl~g~~~~~~~~~a----l~~ll~dp~vd~vlv~i~~~~~~~~~~a---~~i~~~~~~~-----~~~kpiv~~~~g~~ 392 (443)
|+|++|+++.+..+++ |+++++||+++++||||+|++++||.+| ++|++++++. ..++|||+|+.|+|
T Consensus 304 FlDvGGga~~e~v~~~~~~~l~ii~~d~~vk~ilvNIfGGI~~cd~VA~tf~GIi~A~k~~~~~~~~~~vPiVVRl~GtN 383 (829)
T 3pff_A 304 YGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPN 383 (829)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHTTSSCCTTCEEEEECBCBCSSCCHHHHHHHHHHHHHHHHHHHHHTTEEEEEECBSTT
T ss_pred eEEecCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCccchHHHHHHHhHHHHHHHHhhhhcccCCceEEEECCCCC
Confidence 9999999999886655 9999999999999999999999999999 9999999985 35899999999999
Q ss_pred HHHHHHHHHHCC----CCcccCC
Q psy12143 393 VDDAKVLIASAA----MKILPCD 411 (443)
Q Consensus 393 ~~~~~~~L~~~G----iP~~~f~ 411 (443)
.++++++|++.| +|+++|.
T Consensus 384 ~eeg~~il~~~g~~lgl~i~v~g 406 (829)
T 3pff_A 384 YQEGLRVMGEVGKTTGIPIHVFG 406 (829)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEC
T ss_pred HHHHHHHHHhCccccCCcEEEeC
Confidence 999999999886 9998776
No 6
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.6e-34 Score=276.88 Aligned_cols=207 Identities=21% Similarity=0.229 Sum_probs=179.4
Q ss_pred ccccCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeec-CCCCCccccccCccCcEEE-eCCHHH
Q psy12143 31 KRNLNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVL-AGGRGKGAFKGGLKGGVKM-VDTPEE 108 (443)
Q Consensus 31 ~~~~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~-~~gk~k~~~~~~~~GGV~l-~~s~ee 108 (443)
.+++.++|+++|++|++||||+|++.++++.+|+.++++++|| |||+||+.. .+|||++ |||.+ +.|++|
T Consensus 15 ~~~~~l~k~~~k~ll~~~GIp~p~~~~~~~~~ea~~~a~~lg~-PvvvKp~~~~~~~r~~~-------gGv~~~v~~~~e 86 (238)
T 1wr2_A 15 QGRTAMVEYEAKQVLKAYGLPVPEEKLAKTLDEALEYAKEIGY-PVVLKLMSPQILHKSDA-------KVVMLNIKNEEE 86 (238)
T ss_dssp TTCCEECHHHHHHHHHTTTCCCCCCEEESSHHHHHHHHHHHCS-SEEEEEECTTCCCHHHH-------TCEEEEECSHHH
T ss_pred cCcCCCCHHHHHHHHHHcCcCCCCeEEeCCHHHHHHHHHHhCC-CEEEEEccCCCCcCCcc-------CCEEEeCCCHHH
Confidence 3557899999999999999999999999999999999999999 999999876 5667665 99999 599999
Q ss_pred HHHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEe
Q psy12143 109 AEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEP 188 (443)
Q Consensus 109 ~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~ 188 (443)
+.++++++++... ... .+....+++||+|+++++|+++++.+|+. +||++++| .||+++|.+.+ .. +.
T Consensus 87 l~~a~~~~~~~~~---~~~-~~~~~~~vlVEe~i~~g~E~~v~v~~d~~-~g~v~~~~-~Gg~~iE~~~d----~~--~~ 154 (238)
T 1wr2_A 87 LKKKWEEIHENAK---KYR-PDAEILGVLVAPMLKPGREVIIGVTEDPQ-FGHAIMFG-LGGIFVEILKD----VT--FR 154 (238)
T ss_dssp HHHHHHHHHHHHH---HHC-TTCCCCEEEEEECCCCCEEEEEEEEEETT-TEEEEEEE-ECSTTHHHHCC----CE--EE
T ss_pred HHHHHHHHHHhhh---hhC-CCCccceEEEEECCCCCeEEEEEEEeCCC-CCcEEEEe-cCCceeeeecc----ee--ee
Confidence 9999999987542 111 23345799999999999999999999998 59999999 99999998864 33 45
Q ss_pred cCCCCCCCHHHHHHHHHHc-------CC-c---hhHHHHHHHHHHHHHhhhhCC--CeEEeeeceeEccCC-CEEEEeEE
Q psy12143 189 VDITVGITKEQALKVADAV-------GL-K---AKRDITAEMLIKMYALFISKD--ASLIEINPYAEDATG-NFFGLDAK 254 (443)
Q Consensus 189 l~p~~~l~~~~a~~~l~~l-------g~-g---~d~~~l~~~l~~l~~l~~~~~--~~~lEINPl~v~~~g-~~~alDa~ 254 (443)
++| ++.+++++|++.+ |+ | .|.+++++++.+||+++.+.+ +.++|||||+++++| +++|+||+
T Consensus 155 ~~P---l~~~~~~~~~~~~~~~~~~~g~~G~~~~d~~~l~~~l~~l~~~~~~~~~~~~~lEINPl~~~~~g~~~~alDa~ 231 (238)
T 1wr2_A 155 LVP---ITEKDARKMIQEIKAYPILAGARGEEPADIDAIVDMLLKVSKLVDDLKDYIKEMDLNPVFVYNKGEGAVIVDSR 231 (238)
T ss_dssp ESS---CCHHHHHHHHHTSTTHHHHHCC--CCCBCHHHHHHHHHHHHHHHHHTTTTEEEEEEEEEEECBTTSCEEECCEE
T ss_pred cCC---CCHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHcCCCCeEEEeccCeEEeCCCCcEEEEEEE
Confidence 678 9999999999877 77 5 699999999999999998875 899999999999985 59999999
Q ss_pred EEecCc
Q psy12143 255 MRFDDN 260 (443)
Q Consensus 255 i~l~~~ 260 (443)
+.+++|
T Consensus 232 ~~~~~~ 237 (238)
T 1wr2_A 232 IILKPK 237 (238)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 999987
No 7
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=99.89 E-value=8.4e-23 Score=213.07 Aligned_cols=259 Identities=17% Similarity=0.195 Sum_probs=178.0
Q ss_pred eEEEEEEeccCCCcEEeecCCCCcchhccccc--CCCeEE-EEecCCCCCCCHHHHHHHHHHc---C----C--c-hhHH
Q psy12143 148 YYFAFMMERSFAGPVLIASSQGGVNIEEVAAE--NPSAIL-YEPVDITVGITKEQALKVADAV---G----L--K-AKRD 214 (443)
Q Consensus 148 l~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~--~~d~v~-~~~l~p~~~l~~~~a~~~l~~l---g----~--g-~d~~ 214 (443)
+.+++.-.... |++=+++..|++-.|.+... ..-.+- -+.+--..+++..+..+.+..= . + + .|-.
T Consensus 139 ~~~~~~~~~~~-G~v~~vsqSG~~~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~d~l~~~~~D~~t~~I~l~~E~i~~~~ 217 (457)
T 2csu_A 139 LNATFITVAKK-GNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMADVDFAELMEYLADTEEDKAIALYIEGVRNGK 217 (457)
T ss_dssp EEEESSCCCEE-CSEEEEESCHHHHHHHHHHHHHTTCEESEEEECTTCCSSCHHHHHHHHTTCSSCCEEEEEESCCSCHH
T ss_pred ceeeecCCCCC-CCEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCCcCCCCHHHHHHHHhcCCCCCEEEEEEecCCCHH
Confidence 44444333333 88877886777766664211 001110 1223322346776666665421 1 1 2 2455
Q ss_pred HHHHHHHHHHHhhhhCCCeEEeeeceeEccCCCEEEEeEE--------EEecC---cchhhhhhhhcccCCccCCHHHHH
Q psy12143 215 ITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAK--------MRFDD---NAEFRQKALFDLRDWSQEDAKEVE 283 (443)
Q Consensus 215 ~l~~~l~~l~~l~~~~~~~~lEINPl~v~~~g~~~alDa~--------i~l~~---~a~~rqp~i~~~~~~~~~~~~e~~ 283 (443)
.+.+...++. ..+ |+++...|+ .+--.+ +.=++ ++.|||+|+.++++ +.|+.
T Consensus 218 ~f~~~a~~~~---~~K--------PVv~~k~G~-~~~g~~aa~~Htgalag~~~~~~AafRqaGv~~v~~-----~~El~ 280 (457)
T 2csu_A 218 KFMEVAKRVT---KKK--------PIIALKAGK-SESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANT-----IDEML 280 (457)
T ss_dssp HHHHHHHHHH---HHS--------CEEEEECC-------------------CHHHHHHHHHHTTCEEESS-----HHHHH
T ss_pred HHHHHHHHhc---CCC--------CEEEEEcCC-CccccchhhcccCccCCcHHHHHHHHHhCCCeEECC-----HHHHH
Confidence 6665555542 122 667655552 111111 11111 56799999988754 45888
Q ss_pred HhcCCCeEeec--CCcEEEEEcchhHHHHHHHHHHHcCCC---------------------CCCeeeecCCCCHHHHHHH
Q psy12143 284 AAKHSLNYIAL--DGSIGCLVNGAGLAMATMDIIKLHGGE---------------------PANFLDVGGGATAAQVKEA 340 (443)
Q Consensus 284 a~~~~l~~~~~--~g~iaiitngGG~g~la~D~~~~~G~~---------------------~~NPvDl~g~~~~~~~~~a 340 (443)
+....|++ ++ ++||+|||||||+|++++|++..+|++ ++||+|++|+++++.|.++
T Consensus 281 ~~~~~l~~-~~~~g~rvaiitngGG~~~laaD~~~~~Gl~l~~l~~~t~~~L~~~lp~~~~~~NPlDl~g~a~~~~~~~a 359 (457)
T 2csu_A 281 SMARAFSQ-PLPRGNKVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRT 359 (457)
T ss_dssp HHHTTTTS-CCCSSSEEEEEESCHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHH
T ss_pred HHHHHhcC-CCCCCCcEEEEECCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccccccCCCeeCCCCCCHHHHHHH
Confidence 88888888 76 788999999999999999999999965 6899999999999999999
Q ss_pred HHHHHcCCCccEEEEEccC---CCCChHHHHHHHHHHHHHcCCCCcEEEE-eCCCCHHHHHHHHHHCCCCcccCCCHHHH
Q psy12143 341 FKIITADPKVCAIMVNIFG---GIMRCDVIAEGIIAAAQELSLKIPIICR-LQGTNVDDAKVLIASAAMKILPCDNLDEA 416 (443)
Q Consensus 341 l~~ll~dp~vd~vlv~i~~---~~~~~~~~a~~i~~~~~~~~~~kpiv~~-~~g~~~~~~~~~L~~~GiP~~~f~s~e~A 416 (443)
++++++||++|+||+++.. +...|+.+++.++++.++...+||++++ ..|++.+++++.|+++|+|+ |++|++|
T Consensus 360 l~~~l~dp~vd~vlv~~~~~~~Gg~~~~~~a~~i~~al~~~~~~kPvvv~~~~g~~~~~~~~~L~~~Gip~--~~spe~A 437 (457)
T 2csu_A 360 AKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYVSEKAKELLEKNGIPT--YERPEDV 437 (457)
T ss_dssp HHHHHHSTTCSEEEEEEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTTTHHHHHHHHTTTCCE--ESSHHHH
T ss_pred HHHHhcCCCCCEEEEEccccccccCCchhHHHHHHHHHHHhcCCCCEEEEeCCCcchHHHHHHHHhCCCCc--cCCHHHH
Confidence 9999999999999997632 1133677888888888774457999985 45666788999999999999 9999999
Q ss_pred HHHHHHHHHHH
Q psy12143 417 ARLAVKLSSIV 427 (443)
Q Consensus 417 v~al~~l~~~~ 427 (443)
++++.+|++.-
T Consensus 438 v~al~~l~~~~ 448 (457)
T 2csu_A 438 ASAAYALVEQA 448 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887653
No 8
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=99.70 E-value=4.9e-17 Score=169.35 Aligned_cols=152 Identities=17% Similarity=0.179 Sum_probs=116.9
Q ss_pred hhhhhhhcccCCccCCHHHHHHhcCCCeEe-------e-c-CCcEEEEEcchhHHHHHHHHHHHcCC-------------
Q psy12143 263 FRQKALFDLRDWSQEDAKEVEAAKHSLNYI-------A-L-DGSIGCLVNGAGLAMATMDIIKLHGG------------- 320 (443)
Q Consensus 263 ~rqp~i~~~~~~~~~~~~e~~a~~~~l~~~-------~-~-~g~iaiitngGG~g~la~D~~~~~G~------------- 320 (443)
|||.|++++++. .|+......|... + + ++||+|||||||+|++++|.+.. |.
T Consensus 213 ~r~~Gvirv~~~-----~el~~~a~~l~~~~~~~~~qp~~~G~rvaivtn~Gg~gvlaaD~~~~-gl~l~~ls~~t~~~l 286 (480)
T 3dmy_A 213 ARDENVWFASSL-----DEAARLACLLSRVTARRNAIAPVSSGFICGLYTGGTLAAEAAGLLAG-HLGVEADDTHQHGMM 286 (480)
T ss_dssp SEETTEEEESSH-----HHHHHHHHHHHHHHHHHHHHCCCSCCEEEEEESCHHHHHHHHHHHHH-HTTCC---CCGGGEE
T ss_pred cccCCEEEECCH-----HHHHHHHHHHhcCccccccCCCCCCCeEEEEECCHHHHHHHHHHHHh-CCCCCCCCHHHHhhh
Confidence 899999998544 4666555445443 2 3 66799999999999999999998 42
Q ss_pred ----------------CCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEE-c--cCCCCCh-HHHHHHHHHHHHHcCC
Q psy12143 321 ----------------EPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVN-I--FGGIMRC-DVIAEGIIAAAQELSL 380 (443)
Q Consensus 321 ----------------~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~-i--~~~~~~~-~~~a~~i~~~~~~~~~ 380 (443)
+.+||+|++ +++.|.++++.+++||++|+|++. + ++...+. ..+++.|+++.++...
T Consensus 287 ~~~~~~~l~~~lp~~~s~~NPvD~~---d~~~~~~al~~~l~D~~vd~vlv~~v~~~~~~~d~~~~~a~ai~~~~~~~~~ 363 (480)
T 3dmy_A 287 LDADSHQIIDLGDDFYTVGRPHPMI---DPTLRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARLD 363 (480)
T ss_dssp EEETTEEEEETTSHHHHTTSCCTTT---CCHHHHHHHHHGGGCTTEEEEEEEEECSTTSCSCHHHHHHHHHHHHHHTSCT
T ss_pred hhhhhccHHHhCcchhhccCCcCCC---CHHHHHHHHHHHhcCCCCCEEEEEeecCCCCCCChHHHHHHHHHHHHHhccC
Confidence 136899987 778899999999999999999883 2 3334554 8899999998776322
Q ss_pred CCcE-EEEe-CCCC-H----HHHHHHHHHCCCCcccCCCHHHHHHHHHHHHH
Q psy12143 381 KIPI-ICRL-QGTN-V----DDAKVLIASAAMKILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 381 ~kpi-v~~~-~g~~-~----~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~ 425 (443)
+||+ +++| +|+. . .+.++.|+++|||+ |++|++|++++.+|+.
T Consensus 364 ~kp~v~v~~~~g~~~~~~~~~~~~~~L~~aGIp~--f~spe~Av~a~~~l~~ 413 (480)
T 3dmy_A 364 NQPLYAIATVTGTERDPQCRSQQIATLEDAGIAV--VSSLPEATLLAAALIH 413 (480)
T ss_dssp TSCCEEEEEEESCTTSTTCHHHHHHHHHHTTCEE--CSSHHHHHHHHHHHTS
T ss_pred CCCeEEEEEecCcccchhhHHHHHHHHHhCCCcc--cCCHHHHHHHHHHHHh
Confidence 6994 5554 4442 2 34668999999999 9999999999998864
No 9
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=99.42 E-value=5.6e-13 Score=134.42 Aligned_cols=105 Identities=21% Similarity=0.236 Sum_probs=85.0
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
..-++..+|++|+++|||+|++..+++.+++.++++++|| |+|+||.... ..| .||.++.|++|+.+++
T Consensus 93 ~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~g~-P~vvKp~~~~-~~g---------~Gv~~v~~~~el~~~~ 161 (369)
T 3aw8_A 93 VAQDRLREKTFFQGLGVPTPPFHPVDGPEDLEEGLKRVGL-PALLKTRRGG-YDG---------KGQALVRTEEEALEAL 161 (369)
T ss_dssp HHTCHHHHHHHHHHHTCCCCCEEEESSHHHHHHHHTTTCS-SEEEEECCC----------------EEEECSHHHHHHHH
T ss_pred HhcCHHHHHHHHHHCCCCCCCceeeCCHHHHHHHHHHcCC-CEEEEEcCCC-CCc---------ceEEEECCHHHHHHHH
Confidence 4578899999999999999999999999999999999999 9999997433 023 2799999999998887
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeec
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIAS 166 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g 166 (443)
+++. ...++||+|+++|.|+++.+.+|+. |.++.++
T Consensus 162 ~~~~---------------~~~~lvEe~i~~g~e~sv~~~~d~~--G~~~~~~ 197 (369)
T 3aw8_A 162 KALG---------------GRGLILEGFVPFDREVSLLAVRGRT--GEVAFYP 197 (369)
T ss_dssp TTTC---------------SSSEEEEECCCCSEEEEEEEEECTT--SCEEECC
T ss_pred HhcC---------------CCcEEEEEcCCCCEEEEEEEEECCC--CCEEEEC
Confidence 6541 1469999999989999999999975 6655554
No 10
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=99.39 E-value=1.3e-12 Score=133.82 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=85.8
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecC--CHHHHHHHHHHcCCCeEEEEEeecCCC-CCccccccCccCcEEEeCCHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAK--TKKEAGEIAKKLNIKDIVLKAQVLAGG-RGKGAFKGGLKGGVKMVDTPEEAE 110 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~--s~~ea~~~a~~lg~~PvVlK~~~~~~g-k~k~~~~~~~~GGV~l~~s~ee~~ 110 (443)
...++...|++|+++|||+|++..++ +.+++.++++++|| |+|+||. .++ .|+ ||.++.|++|+.
T Consensus 120 ~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~g~-P~VvKp~--~gg~~g~---------Gv~~v~~~~el~ 187 (403)
T 3k5i_A 120 TIQNKFNQKEHLRKYGIPMAEHRELVENTPAELAKVGEQLGY-PLMLKSK--TMAYDGR---------GNFRVNSQDDIP 187 (403)
T ss_dssp HHTSHHHHHHHHHTTTCCBCCEEEESSCCHHHHHHHHHHHCS-SEEEEES--SSCCTTT---------TEEEECSTTSHH
T ss_pred HhcCHHHHHHHHHHCCcCCCCEEEEcCCCHHHHHHHHHHhCC-CEEEEeC--CCCcCCC---------CEEEECCHHHHH
Confidence 34678889999999999999999999 99999999999999 9999996 333 343 799999999999
Q ss_pred HHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeec
Q psy12143 111 EVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIAS 166 (443)
Q Consensus 111 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g 166 (443)
++++.+. ...++||+|++++.|+++.+.+|.. | +..+.
T Consensus 188 ~a~~~~~---------------~~~~lvEe~i~~~~E~sv~v~~~~~--g-~~~~p 225 (403)
T 3k5i_A 188 EALEALK---------------DRPLYAEKWAYFKMELAVIVVKTKD--E-VLSYP 225 (403)
T ss_dssp HHHHHTT---------------TSCEEEEECCCEEEEEEEEEEECSS--C-EEECC
T ss_pred HHHHhcC---------------CCcEEEecCCCCCeEEEEEEEEcCC--C-EEEeC
Confidence 8887541 1469999999988999999999975 5 44443
No 11
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=99.36 E-value=2.4e-12 Score=132.73 Aligned_cols=162 Identities=18% Similarity=0.234 Sum_probs=112.2
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHH----cCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKK----LNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEA 109 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~----lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~ 109 (443)
..-++...|++|+++|||+|++..+++.+|+.+++++ + | |+|+||. ..|+.|+ ||.++.|++|+
T Consensus 130 ~~~dK~~~k~~l~~~Gip~p~~~~v~~~~e~~~~~~~~~~~~-~-P~VvKp~-~~g~~G~---------Gv~~v~~~~el 197 (419)
T 4e4t_A 130 VAQDRIAEKRFIEASGVPVAPHVVIESAAALAALDDAALDAV-L-PGILKTA-RLGYDGK---------GQVRVSTAREA 197 (419)
T ss_dssp HHTCHHHHHHHHHHTTCCBCCEEEECSHHHHHTSCHHHHHTT-C-SEEEEES-SSCCTTT---------TEEEECSHHHH
T ss_pred HhcCHHHHHHHHHHcCcCCCCeEEECCHHHHHHHHHhhcccc-C-CEEEEec-CCCCCCC---------ceEEECCHHHH
Confidence 3467888999999999999999999999999988888 9 8 9999995 1223333 79999999999
Q ss_pred HHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEec
Q psy12143 110 EEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPV 189 (443)
Q Consensus 110 ~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l 189 (443)
.++++.+ . ...++||+|+++++|+++.+.+|.. |-++.++ . +|... .+.++...+
T Consensus 198 ~~a~~~~-~--------------~~~~lvEe~i~~~~Eisv~v~~~~~--G~~~~~~-~----~e~~~---~~g~~~~~~ 252 (419)
T 4e4t_A 198 RDAHAAL-G--------------GVPCVLEKRLPLKYEVSALIARGAD--GRSAAFP-L----AQNVH---HNGILALTI 252 (419)
T ss_dssp HHHHHHT-T--------------TCCEEEEECCCEEEEEEEEEEECTT--SCEEECC-C----EEEEE---ETTEEEEEE
T ss_pred HHHHHhc-C--------------CCcEEEeecCCCCeEEEEEEEEcCC--CCEEEEe-C----eEEEe---eCCeEEEEE
Confidence 9988754 1 1469999999988999999999985 5555554 1 33332 133444445
Q ss_pred CCCCCCCHH-------HHHHHHHHcCC-chhHHHHHHHHHHHHHhhhhC--CCeEEeeeceeE
Q psy12143 190 DITVGITKE-------QALKVADAVGL-KAKRDITAEMLIKMYALFISK--DASLIEINPYAE 242 (443)
Q Consensus 190 ~p~~~l~~~-------~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~~--~~~~lEINPl~v 242 (443)
.|...++.+ .++++++.||+ |... .++|.+. ++..+||||..-
T Consensus 253 ~Pa~~l~~~~~~~~~~~a~~i~~~lg~~G~~~----------vE~~~~~dG~~~v~EiNpR~~ 305 (419)
T 4e4t_A 253 VPAPAADTARVEEAQQAAVRIADTLGYVGVLC----------VEFFVLEDGSFVANEMAPRPH 305 (419)
T ss_dssp ESCTTCCHHHHHHHHHHHHHHHHHHTCCEEEE----------EEEEEETTCCEEEEEEESSCC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHCCCeeEEE----------EEEEEeCCCCEEEEEEeCCCC
Confidence 565445653 23444455555 4211 1233332 366788888764
No 12
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=99.36 E-value=5.6e-12 Score=128.20 Aligned_cols=105 Identities=16% Similarity=0.226 Sum_probs=86.3
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
..-++...|++|+++|||+|++..+++.+++.++++++|| |+|+||... ++.|+ ||.++.|++|+.+++
T Consensus 109 ~~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~g~-P~vvKp~~~-~~~g~---------Gv~~v~~~~el~~~~ 177 (389)
T 3q2o_A 109 KTQNRFTEKNAIEKAGLPVATYRLVQNQEQLTEAIAELSY-PSVLKTTTG-GYDGK---------GQVVLRSEADVDEAR 177 (389)
T ss_dssp HTTSHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHCS-SEEEEESSC-CSSSC---------CEEEESSGGGHHHHH
T ss_pred HhcCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhcCC-CEEEEeCCC-CCCCC---------CeEEECCHHHHHHHH
Confidence 4568889999999999999999999999999999999999 999999632 11233 788999999999888
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeec
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIAS 166 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g 166 (443)
+.+. ...++||+|++++.|+++.+.+|.. |-+..++
T Consensus 178 ~~~~---------------~~~~lvEe~i~g~~E~~v~~~~~~~--G~~~~~~ 213 (389)
T 3q2o_A 178 KLAN---------------AAECILEKWVPFEKEVSVIVIRSVS--GETKVFP 213 (389)
T ss_dssp HHHH---------------HSCEEEEECCCCSEEEEEEEEECTT--CCEEECC
T ss_pred HhcC---------------CCCEEEEecccCceEEEEEEEEcCC--CCEEEec
Confidence 7652 1469999999977999999999874 5544443
No 13
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=99.34 E-value=4.5e-12 Score=131.05 Aligned_cols=104 Identities=25% Similarity=0.291 Sum_probs=86.5
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
...++..+|++|+++|||+|++..+++.+++.++++++|| |+|+||....+|+ ||.++.|.+|+.+++
T Consensus 104 ~~~dK~~~k~~l~~~GIptp~~~~~~~~~ea~~~~~~~g~-PvVvKp~~~~gg~-----------GV~iv~~~~el~~a~ 171 (431)
T 3mjf_A 104 LEGSKAFTKDFLARHNIPSAEYQNFTDVEAALAYVRQKGA-PIVIKADGLAAGK-----------GVIVAMTQEEAETAV 171 (431)
T ss_dssp HHHCHHHHHHHHHHTTCSBCCEEEESCHHHHHHHHHHHCS-SEEEEESSSCTTC-----------SEEEECSHHHHHHHH
T ss_pred HhhCHHHHHHHHHHcCCCCCCeEeeCCHHHHHHHHHHcCC-eEEEEECCCCCCC-----------cEEEeCCHHHHHHHH
Confidence 3468889999999999999999999999999999999999 9999997544333 789999999999999
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
++++.... .+.....++||+|++ |.|+++.+..|..
T Consensus 172 ~~~~~~~~-------~g~~~~~vlvEe~i~-G~E~sv~~~~dg~ 207 (431)
T 3mjf_A 172 NDMLAGNA-------FGDAGHRIVVEEFLD-GEEASFIVMVDGE 207 (431)
T ss_dssp HHHHTTHH-------HHCCCCCEEEEECCC-SEEEEEEEEEESS
T ss_pred HHHHhhcc-------ccCCCCeEEEEEeeC-CcEEEEEEEEcCC
Confidence 98874311 111125799999999 7999999999864
No 14
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=99.33 E-value=2.3e-12 Score=130.84 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCC-CCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGG-RGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~g-k~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
.-++...|++|+++|||+|++..+++.+++.++++++|| |+|+||. .++ .|+ ||.++.|++|+.+++
T Consensus 108 ~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~g~-P~vvKp~--~gg~~g~---------Gv~~v~~~~el~~a~ 175 (377)
T 3orq_A 108 LQDRLTEKETLKSAGTKVVPFISVKESTDIDKAIETLGY-PFIVKTR--FGGYDGK---------GQVLINNEKDLQEGF 175 (377)
T ss_dssp HHSHHHHHHHHHHTTCCBCCEEEECSSTHHHHHHHHTCS-SEEEEES--SSCCTTT---------TEEEECSTTSHHHHH
T ss_pred hcCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHHcCC-CEEEEeC--CCCCCCC---------CeEEECCHHHHHHHH
Confidence 457888999999999999999999999999999999999 9999996 333 333 799999999999988
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeec
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIAS 166 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g 166 (443)
+.+.. ..++||+|+++..|+++.+.+|.. |.+..++
T Consensus 176 ~~~~~---------------~~~ivEe~i~g~~E~sv~~~~~~~--g~~~~~~ 211 (377)
T 3orq_A 176 KLIET---------------SECVAEKYLNIKKEVSLTVTRGNN--NQITFFP 211 (377)
T ss_dssp HHHTT---------------SCEEEEECCCEEEEEEEEEEECGG--GCEEECC
T ss_pred HhcCC---------------CcEEEEccCCCCEEEEEEEEEeCC--CCEEEEC
Confidence 76531 469999999966999999998874 5555554
No 15
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=99.32 E-value=1.1e-11 Score=128.66 Aligned_cols=104 Identities=26% Similarity=0.299 Sum_probs=86.8
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
..-++..+|++|+++|||+|++..+++.+++.++++++|| |+|+||....+|+ ||.++.|.+|+.+++
T Consensus 120 ~~~dK~~~k~~l~~~GIp~p~~~~~~~~~ea~~~~~~~g~-PvVvKp~~~~gg~-----------GV~iv~~~eel~~a~ 187 (442)
T 3lp8_A 120 LESSKGFTKELCMRYGIPTAKYGYFVDTNSAYKFIDKHKL-PLVVKADGLAQGK-----------GTVICHTHEEAYNAV 187 (442)
T ss_dssp HHHCHHHHHHHHHHHTCCBCCEEEESSHHHHHHHHHHSCS-SEEEEESSCCTTT-----------SEEEESSHHHHHHHH
T ss_pred HhhCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHcCC-cEEEeECCCCCCC-----------eEEEeCCHHHHHHHH
Confidence 3467889999999999999999999999999999999999 9999997544333 788999999999999
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
++++.... .+.....++||+|++ |.|+++.+..|..
T Consensus 188 ~~~~~~~~-------~g~~~~~vlvEe~i~-G~E~sv~~~~dg~ 223 (442)
T 3lp8_A 188 DAMLVHHK-------FGEAGCAIIIEEFLE-GKEISFFTLVDGS 223 (442)
T ss_dssp HHHHTSCT-------TGGGGSSEEEEECCC-SEEEEEEEEEESS
T ss_pred HHHHhhcc-------cCCCCCeEEEEEeec-CcEEEEEEEECCC
Confidence 98874310 122235799999999 8999999999864
No 16
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=99.31 E-value=5.7e-12 Score=134.76 Aligned_cols=106 Identities=15% Similarity=0.269 Sum_probs=88.3
Q ss_pred CCHHHHHHHHHHCCCCCCCeee-----------------------------cCCHHHHHHHHHHcCCCeEEEEEeecCCC
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGV-----------------------------AKTKKEAGEIAKKLNIKDIVLKAQVLAGG 86 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~-----------------------------v~s~~ea~~~a~~lg~~PvVlK~~~~~~g 86 (443)
-++..+|++|+++|||+|++.. +++.+|+.++++++|| |||+||. .++
T Consensus 179 ~DK~~ak~ll~~aGVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~iGy-PvVVKp~--~Gg 255 (587)
T 3jrx_A 179 GDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGF-PLMIKAS--EGG 255 (587)
T ss_dssp CSHHHHHHHHHHTTCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHCS-SEEEEET--TCC
T ss_pred CCHHHHHHHHHHcCCCCCCeecccccccccccccccccccccchhhccccccCCHHHHHHHHHhcCC-eEEEEeC--CCC
Confidence 4788999999999999999987 8899999999999999 9999996 333
Q ss_pred CCccccccCccCcEEEeCCHHHHHHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeec
Q psy12143 87 RGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIAS 166 (443)
Q Consensus 87 k~k~~~~~~~~GGV~l~~s~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g 166 (443)
.|+ ||+++.|++|+.++++++.... . ...++||+|+++.+|+++.+..|.. |.++.++
T Consensus 256 GGk---------Gv~iV~s~eEL~~a~~~a~~~~--------~---~~~vlVEeyI~g~rei~V~vl~D~~--G~vv~l~ 313 (587)
T 3jrx_A 256 GGK---------GIRKAESAEDFPILFRQVQSEI--------P---GSPIFLMKLAQHARHLEVQILADQY--GNAVSLF 313 (587)
T ss_dssp SSS---------SEEEECSTTTHHHHHHHHHHHS--------T---TCCEEEEECCCSCEEEEEEEEECSS--SCEEEEE
T ss_pred CCC---------CeEEeCCHHHHHHHHHHHHhhc--------c---CCCEEEEEecCCCcEEEEEEEEcCC--CCEEEEe
Confidence 343 7999999999999998875432 0 2579999999977999999999984 6666543
No 17
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=99.30 E-value=9.4e-12 Score=128.81 Aligned_cols=110 Identities=18% Similarity=0.318 Sum_probs=88.9
Q ss_pred CCHHHHHHHHHHCCCCCCCee--ecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFG--VAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~--~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
-++...|++|+++|||+|++. .+++.+|+.++++++|| |+|+||. .++.|+ ||.++.|++|+.+++
T Consensus 118 ~dK~~~~~~l~~~Gip~p~~~~~~~~~~~e~~~~~~~~g~-PvvvKp~--~g~gg~---------Gv~~v~~~~el~~~~ 185 (446)
T 3ouz_A 118 SDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGY-PVILKAA--AGGGGR---------GMRVVENEKDLEKAY 185 (446)
T ss_dssp HSHHHHHHHHHHTTCCBCSBCSSSCCSHHHHHHHHHHHCS-SEEEEET--TCCTTC---------SEEEECSGGGHHHHH
T ss_pred CCHHHHHHHHHHcCCCcCCCcccCCCCHHHHHHHHHHhCC-CEEEEEC--CCCCCC---------CEEEECCHHHHHHHH
Confidence 578889999999999999997 88999999999999999 9999996 333333 799999999999999
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeec
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIAS 166 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g 166 (443)
+++..... .. .+ ...++||+|+++.+|+.+.+..|.. |.++.++
T Consensus 186 ~~~~~~~~---~~--~~--~~~~lvEe~i~g~~e~~v~v~~d~~--g~~~~~~ 229 (446)
T 3ouz_A 186 WSAESEAM---TA--FG--DGTMYMEKYIQNPRHIEVQVIGDSF--GNVIHVG 229 (446)
T ss_dssp HHHHHHHH---HH--HS--CCCEEEEECCSSCEEEEEEEEECTT--SCEEEEE
T ss_pred HHHHHHHH---Hh--cC--CCCEEEEeCCCCCcEEEEEEEEcCC--CCEEEEe
Confidence 88765421 00 01 2479999999977999999999985 6666554
No 18
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=99.29 E-value=5.8e-12 Score=133.76 Aligned_cols=107 Identities=15% Similarity=0.257 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHHHCCCCCCCeee-----------------------------cCCHHHHHHHHHHcCCCeEEEEEeecCC
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGV-----------------------------AKTKKEAGEIAKKLNIKDIVLKAQVLAG 85 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~-----------------------------v~s~~ea~~~a~~lg~~PvVlK~~~~~~ 85 (443)
.-++..+|++|+++|||+|++.. +++.+|+.++++++|| |+|+||. .+
T Consensus 162 ~~DK~~~k~ll~~~GVPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~ea~~~a~~igy-PvVVKp~--~g 238 (540)
T 3glk_A 162 LGDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGF-PLMIKAS--EG 238 (540)
T ss_dssp --CHHHHHHHHHHTTCCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHHHHHHHHHCS-SEEEEET--TC
T ss_pred hCCHHHHHHHHHHcCCCCCCcccccccccccccccccccccccccccccccCcCCHHHHHHHHHhcCC-cEEEEEC--CC
Confidence 35788999999999999999987 8899999999999999 9999996 33
Q ss_pred CCCccccccCccCcEEEeCCHHHHHHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEee
Q psy12143 86 GRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIA 165 (443)
Q Consensus 86 gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~ 165 (443)
+.|+ ||+++.|++|+.++++++.... . ...++||+|+++.+|+++.+..|.. |.++.+
T Consensus 239 gGG~---------Gv~iv~~~~eL~~a~~~~~~~~--------~---~~~vlVEe~I~g~rei~V~vl~d~~--G~vv~l 296 (540)
T 3glk_A 239 GGGK---------GIRKAESAEDFPILFRQVQSEI--------P---GSPIFLMKLAQHARHLEVQILADQY--GNAVSL 296 (540)
T ss_dssp C-------------EEEECSTTTHHHHHHHHHHHS--------T---TCCEEEEECCSSEEEEEEEEEECTT--SCEEEE
T ss_pred CCCC---------CEEEECCHHHHHHHHHHHHhhc--------c---CCCEEEEEecCCCcEEEEEEEEcCC--CCEEEE
Confidence 3343 7999999999999998875432 0 2579999999966999999999984 676655
Q ss_pred c
Q psy12143 166 S 166 (443)
Q Consensus 166 g 166 (443)
+
T Consensus 297 ~ 297 (540)
T 3glk_A 297 F 297 (540)
T ss_dssp E
T ss_pred e
Confidence 3
No 19
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=5.6e-13 Score=110.39 Aligned_cols=98 Identities=20% Similarity=0.182 Sum_probs=77.0
Q ss_pred CCHHHHHHHHHHCCCCCCCee--ecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFG--VAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~--~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
.+++.+|++|+++|||+|++. .+++.+++.++++++|| |+|+||.. ++.|+ ||.++.|++++.+++
T Consensus 7 ~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~~-P~vvKp~~--~~~~~---------gv~~v~~~~el~~~~ 74 (108)
T 2cqy_A 7 GDKIESKLLAKKAEVNTIPGFDGVVKDAEEAVRIAREIGY-PVMIKASA--GGGGK---------GMRIAWDDEETRDGF 74 (108)
T ss_dssp CCCCCSTTCCCSSCCCCCSCCCSCBSSHHHHHHHHHHHCS-SEEEEETT--SCCTT---------TCEEESSHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHhcCC-CEEEEECC--CCCCc---------cEEEeCCHHHHHHHH
Confidence 345567889999999999998 88999999999999999 99999973 33332 788899999999999
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEE
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAF 152 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv 152 (443)
++++.... ... + ..+++||+|+++.+|+.+++
T Consensus 75 ~~~~~~~~---~~~--~--~~~~lvee~i~g~~E~~v~v 106 (108)
T 2cqy_A 75 RLSSQEAA---SSF--G--DDRLLIEKFIDNPRHISGPS 106 (108)
T ss_dssp HHHHHHHH---HHT--S--SCCEEEEECCSSSSCCCSCC
T ss_pred HHHHHHHH---hhc--C--CCcEEEeeccCCCcEEEEEe
Confidence 88865321 001 1 25799999999777988765
No 20
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=99.27 E-value=4.7e-12 Score=127.76 Aligned_cols=100 Identities=14% Similarity=0.146 Sum_probs=80.3
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCC--HHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDT--PEEAEEV 112 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s--~ee~~~a 112 (443)
.-++...|++|+++|||+|++..+++.+++.++++++|| |+|+||... |+.|+ |+.+++| ++|+.++
T Consensus 77 ~~DK~~~k~~l~~~GIptp~~~~v~~~~e~~~~~~~~G~-P~VvKp~~~-G~~Gk---------Gv~~v~~~~~~el~~a 145 (355)
T 3eth_A 77 IADRLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLGE-LAIVKRRTG-GYDGR---------GQWRLRANETEQLPAE 145 (355)
T ss_dssp HHSHHHHHHHHHHTTCCBCCEEEECCGGGHHHHHHHHCS-EEEEEESSS-CCTTT---------TEEEEETTCGGGSCGG
T ss_pred hcCHHHHHHHHHHCccCCCCEEEECCHHHHHHHHHHcCC-CEEEEecCC-CCCCC---------eEEEEcCCCHHHHHHH
Confidence 356778999999999999999999999999999999999 999999632 22334 7888888 8887653
Q ss_pred HHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeec
Q psy12143 113 AGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIAS 166 (443)
Q Consensus 113 ~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g 166 (443)
+ + + .++||+|+++++|+++.+.+|.. |-+..+.
T Consensus 146 ~---~------------~----~vivEe~I~~~~Eisv~v~~~~~--G~~~~~p 178 (355)
T 3eth_A 146 C---Y------------G----ECIVEQGINFSGEVSLVGARGFD--GSTVFYP 178 (355)
T ss_dssp G---T------------T----TEEEEECCCCSEEEEEEEEECTT--SCEEECC
T ss_pred h---h------------C----CEEEEEccCCCcEEEEEEEEcCC--CCEEEEC
Confidence 1 1 1 49999999999999999999875 5555444
No 21
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=99.26 E-value=2.3e-12 Score=129.61 Aligned_cols=104 Identities=24% Similarity=0.296 Sum_probs=53.6
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecC-CCCCccccccCccCcEEEeCCHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLA-GGRGKGAFKGGLKGGVKMVDTPEEAEEV 112 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~-~gk~k~~~~~~~~GGV~l~~s~ee~~~a 112 (443)
..-++...|++|+++|||+|++..++ .+++.++++++|| |+|+||.... +| + ||.++.|.+|+.++
T Consensus 89 ~~~dK~~~~~~l~~~gip~p~~~~~~-~~~~~~~~~~~~~-P~vvKp~~~~~~g--~---------Gv~~v~~~~el~~~ 155 (365)
T 2z04_A 89 VKKSRIREKLFLKKHGFPVPEFLVIK-RDEIIDALKSFKL-PVVIKAEKLGYDG--K---------GQYRIKKLEDANQV 155 (365)
T ss_dssp HHTCHHHHHHHHHTTTCCCCCEEEC----------------CEEEECC--------------------------------
T ss_pred HhhCHHHHHHHHHHcCCCCCCEEEEc-HHHHHHHHHhcCC-CEEEEEcCCCcCC--C---------CeEEECCHHHHHHH
Confidence 35788899999999999999999998 8899888899999 9999997443 33 2 78888999999888
Q ss_pred HHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeec
Q psy12143 113 AGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIAS 166 (443)
Q Consensus 113 ~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g 166 (443)
+++++. ...++||+|+++|.|+++.+.+|+. |.++.++
T Consensus 156 ~~~~~~--------------~~~~lvEe~i~~g~e~sv~~~~d~~--G~~~~~~ 193 (365)
T 2z04_A 156 VKNHDK--------------EESFIIEEFVKFEAEISCIGVRDRE--GKTYFYP 193 (365)
T ss_dssp -----------------------CEEEECCCCSEEEEEEEEECTT--CCEEECC
T ss_pred HHHhcc--------------CCCEEEEccCCCCEEEEEEEEECCC--CCEEEEC
Confidence 876642 1469999999988999999999975 5555544
No 22
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.24 E-value=1.9e-11 Score=139.58 Aligned_cols=106 Identities=19% Similarity=0.271 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGK 115 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~ 115 (443)
-++...|++|+++|||+|++..+++.+|+.++++++|| |+|+||....||+ ||.++.|++|+.+++++
T Consensus 127 ~DK~~~k~~l~~~Gipvp~~~~v~~~~ea~~~~~~ig~-PvVvKp~~~~Gg~-----------Gv~iv~~~eel~~~~~~ 194 (1073)
T 1a9x_A 127 EDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGF-PCIIRPSFTMGGS-----------GGGIAYNREEFEEICAR 194 (1073)
T ss_dssp HSHHHHHHHHHHTTCCCCSEEEESSHHHHHHHHHHHCS-SEEEEETTCCTTT-----------TCEEESSHHHHHHHHHH
T ss_pred hCHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHcCC-CEEEEECCCCCCC-----------ceEEeCCHHHHHHHHHH
Confidence 47888999999999999999999999999999999999 9999997433332 67889999999999988
Q ss_pred HhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeec
Q psy12143 116 MIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIAS 166 (443)
Q Consensus 116 l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g 166 (443)
++... ....++||+|+++.+|+++.+.+|.. |.++.++
T Consensus 195 ~~~~~-----------~~~~vlvEe~I~G~~E~~v~v~~d~~--g~~v~~~ 232 (1073)
T 1a9x_A 195 GLDLS-----------PTKELLIDESLIGWKEYEMEVVRDKN--DNCIIVC 232 (1073)
T ss_dssp HHHHC-----------TTSCEEEEECCTTSEEEEEEEEECTT--CCEEEEE
T ss_pred HHhhC-----------CCCcEEEEEccCCCeEEEEEEEEeCC--CCEEEEE
Confidence 76431 12579999999977999999999974 5555444
No 23
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=99.24 E-value=2.2e-11 Score=123.32 Aligned_cols=102 Identities=13% Similarity=0.083 Sum_probs=83.2
Q ss_pred CCCHHHHHHHH-HHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 35 NVHEHVSYTLL-KEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 35 ~L~e~~ak~lL-~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
.-++...|++| +++|||+|++..+++.+++.++++++|| |+|+||... +.|+ ||.++.|++|+.+++
T Consensus 110 ~~dK~~~~~~l~~~~gip~p~~~~~~~~~~~~~~~~~~g~-P~vvKp~~g--~gg~---------Gv~~v~~~~el~~~~ 177 (391)
T 1kjq_A 110 TMNREGIRRLAAEELQLPTSTYRFADSESLFREAVADIGY-PCIVKPVMS--SSGK---------GQTFIRSAEQLAQAW 177 (391)
T ss_dssp HHSHHHHHHHHHTTSCCCBCCEEEESSHHHHHHHHHHHCS-SEEEEESCC-----C---------CCEEECSGGGHHHHH
T ss_pred hhCHHHHHHHHHHhCCCCCCCeeeeCCHHHHHHHHHhcCC-CEEEEeCCC--CCCC---------CeEEECCHHHHHHHH
Confidence 35778899999 8999999999999999999999999999 999999733 3333 788999999999999
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
++++.... + ....++||+|++++.|+.+.+.+|..
T Consensus 178 ~~~~~~~~--------~-~~~~~lvEe~i~~g~E~sv~~~~~~~ 212 (391)
T 1kjq_A 178 KYAQQGGR--------A-GAGRVIVEGVVKFDFEITLLTVSAVD 212 (391)
T ss_dssp HHHHHHSG--------G-GCCCEEEEECCCCSEEEEEEEEEETT
T ss_pred HHHHhhcc--------c-CCCCEEEEEecCCCeEEEEEEEEeCC
Confidence 88764320 1 12579999999989999999999864
No 24
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=99.23 E-value=1.5e-10 Score=114.38 Aligned_cols=105 Identities=17% Similarity=0.235 Sum_probs=82.8
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHH----HHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIA----KKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAE 110 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a----~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~ 110 (443)
..++...|++|+++|||+|++.++++.+++.+++ +++|| |+|+||... +.++ ||.++.|++++.
T Consensus 105 ~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~~g~-PvvvKP~~~--~~s~---------Gv~~v~~~~el~ 172 (317)
T 4eg0_A 105 GLDKFRTKLVWQQTGVPTPPFETVMRGDDYAARATDIVAKLGL-PLFVKPASE--GSSV---------AVLKVKTADALP 172 (317)
T ss_dssp HHCHHHHHHHHHHTTCCCCCEEEEETTSCHHHHHHHHHHHHCS-CEEEEECC----------------CCEEECSGGGHH
T ss_pred HhCHHHHHHHHHHCCcCCCCEEEEECchhHHHHHHHHHHhcCC-CEEEEeCCC--CCCC---------CEEEECCHHHHH
Confidence 3578899999999999999999998887777777 88999 999999733 3332 788899999999
Q ss_pred HHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeec
Q psy12143 111 EVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIAS 166 (443)
Q Consensus 111 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g 166 (443)
+++++++.. ...++||+|++.|.|+++++..|.. +|++...
T Consensus 173 ~a~~~~~~~-------------~~~~lvEe~i~~G~E~~v~vl~~~~--~~~~~i~ 213 (317)
T 4eg0_A 173 AALSEAATH-------------DKIVIVEKSIEGGGEYTACIAGDLD--LPLIKIV 213 (317)
T ss_dssp HHHHHHTTT-------------CSEEEEEECCCSSEEEEEEEETTCC--CCCEEEE
T ss_pred HHHHHHHhC-------------CCeEEEEcCCCCCcEEEEEEECCcc--cceEEEe
Confidence 998876421 2579999999978999999998864 4544443
No 25
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.22 E-value=5.2e-11 Score=123.21 Aligned_cols=109 Identities=21% Similarity=0.322 Sum_probs=86.9
Q ss_pred CCHHHHHHHHHHCCCCCCCee--ecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFG--VAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~--~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
-++...|++|+++|||+|++. .+++.+++.++++++|| |+|+||....+ |+ ||.++.|.+|+.+++
T Consensus 113 ~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~g~-PvvvKp~~g~g--g~---------Gv~~v~~~~el~~~~ 180 (451)
T 1ulz_A 113 GDKARSKEVMKKAGVPVVPGSDGVLKSLEEAKALAREIGY-PVLLKATAGGG--GR---------GIRICRNEEELVKNY 180 (451)
T ss_dssp HSHHHHHHHHHHTTCCBCCBCSSSCCCHHHHHHHHHHHCS-SEEEEECSSSS--CC---------SCEEESSHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCCCCCcccccCCHHHHHHHHHHcCC-CEEEEECCCCC--Cc---------cEEEeCCHHHHHHHH
Confidence 577889999999999999997 78999999999999999 99999974333 33 788999999999999
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEee
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIA 165 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~ 165 (443)
++++.... .. .+ ...++||+|+++++|+.+.+..|.. |.++.+
T Consensus 181 ~~~~~~~~---~~--~~--~~~~lvEe~i~g~~e~~v~v~~~~~--G~~~~~ 223 (451)
T 1ulz_A 181 EQASREAE---KA--FG--RGDLLLEKFIENPKHIEYQVLGDKH--GNVIHL 223 (451)
T ss_dssp HHHHHHHH---HT--TS--CCCEEEEECCCSCEEEEEEEEECTT--SCEEEE
T ss_pred HHHHHHHH---Hh--cC--CCeEEEEEcccCCeEEEEEEEEcCC--CCEEEE
Confidence 88765320 00 11 1479999999977999999999874 555443
No 26
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=99.21 E-value=5.4e-11 Score=123.57 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=86.6
Q ss_pred CCCHHHHHHHHHHCCCCCCCee--ecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFG--VAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEV 112 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~--~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a 112 (443)
.-++...|++|+++|||+|++. .+++.+|+.++++++|| |+|+||....+ |+ ||.++.|.+|+.++
T Consensus 118 ~~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~g~-PvvvKp~~g~g--g~---------Gv~~v~~~~el~~~ 185 (461)
T 2dzd_A 118 FGDKVKARHAAVNAGIPVIPGSDGPVDGLEDVVAFAEAHGY-PIIIKAALGGG--GR---------GMRIVRSKSEVKEA 185 (461)
T ss_dssp TTSHHHHHHHHHHTTCCBCCBCSSCCSSHHHHHHHHHHHCS-CEEEEESTTCS--SS---------SEEEECCGGGHHHH
T ss_pred hhCHHHHHHHHHHcCCCCCCCcccCcCCHHHHHHHHHhcCC-cEEEEeCCCCC--CC---------CEEEeCCHHHHHHH
Confidence 4678889999999999999997 78999999999999999 99999974333 33 79999999999999
Q ss_pred HHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEE
Q psy12143 113 AGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVL 163 (443)
Q Consensus 113 ~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv 163 (443)
+++++.... .. .+ ...++||+|+++++|+.+.+..|.. |.++
T Consensus 186 ~~~~~~~~~---~~--~~--~~~~lvEe~i~g~~e~~v~v~~~~~--G~~~ 227 (461)
T 2dzd_A 186 FERAKSEAK---AA--FG--SDEVYVEKLIENPKHIEVQILGDYE--GNIV 227 (461)
T ss_dssp HHHHHHHHH---HH--TS--CCCEEEEECCCSCEEEEEEEEECTT--CCEE
T ss_pred HHHHHHHHH---hh--cC--CCcEEEEECCCCCeEEEEEEEEcCC--CCEE
Confidence 888765310 00 11 1579999999977999999999874 5554
No 27
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=99.20 E-value=6.9e-11 Score=122.32 Aligned_cols=109 Identities=19% Similarity=0.210 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHCCCCCCCee--ecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFG--VAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~--~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
-+++..|++|+++|||+|++. .+++.+++.++++++|| |+|+||.... .|+ ||.++.|++|+.+++
T Consensus 113 ~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~g~-PvvvKp~~g~--gg~---------Gv~~v~~~~el~~~~ 180 (451)
T 2vpq_A 113 GIKDVAKAEMIKANVPVVPGSDGLMKDVSEAKKIAKKIGY-PVIIKATAGG--GGK---------GIRVARDEKELETGF 180 (451)
T ss_dssp HSHHHHHHHHHHTTCCBCSBCSSCBSCHHHHHHHHHHHCS-SEEEEETTCC--TTC---------SEEEESSHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCcCCCcccCcCCHHHHHHHHHhcCC-cEEEEECCCC--CCC---------CEEEeCCHHHHHHHH
Confidence 577889999999999999977 88999999999999999 9999996433 233 799999999999999
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEee
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIA 165 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~ 165 (443)
++++.... .. .+ ...++||+|+++.+|+.+.+..|.. |.++.+
T Consensus 181 ~~~~~~~~---~~--~~--~~~~lvEe~i~g~~e~~v~v~~~~~--G~~~~~ 223 (451)
T 2vpq_A 181 RMTEQEAQ---TA--FG--NGGLYMEKFIENFRHIEIQIVGDSY--GNVIHL 223 (451)
T ss_dssp HHHHHHHH---HH--HS--CCCEEEEECCCSEEEEEEEEEECTT--SCEEEE
T ss_pred HHHHHHHH---hh--cC--CCcEEEEEecCCCeEEEEEEEEcCC--CCEEEE
Confidence 88764310 00 01 1579999999966899999999874 555544
No 28
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=99.20 E-value=2.9e-10 Score=115.92 Aligned_cols=96 Identities=16% Similarity=0.249 Sum_probs=81.6
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHH----HHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKK----EAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEE 111 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~----ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~ 111 (443)
.++..+|++|+++|||+|++..+++.+ ++.++++++|| |+||||.. ++.++ ||.++.|++|+.+
T Consensus 158 ~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~~~lg~-PvvVKP~~--ggss~---------Gv~~v~~~~el~~ 225 (386)
T 3e5n_A 158 MDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGL-PLFVKPAN--QGSSV---------GVSQVRTADAFAA 225 (386)
T ss_dssp HBHHHHHHHHHHTTCCBCCEEEEEHHHHTTCCHHHHHHHHCS-SEEEEESB--SCSST---------TCEEECSGGGHHH
T ss_pred hCHHHHHHHHHHCCCCCCCEEEEeCcccchhhHHHHHHhcCC-CEEEEECC--CCcCC---------CEEEECCHHHHHH
Confidence 578889999999999999999999887 78888899999 99999973 33333 7888999999999
Q ss_pred HHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 112 VAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 112 a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
++++++.. ...++||+|++ |+|+++++..|..
T Consensus 226 a~~~a~~~-------------~~~vlVEe~I~-G~E~~v~vl~~~~ 257 (386)
T 3e5n_A 226 ALALALAY-------------DHKVLVEAAVA-GREIECAVLGNAV 257 (386)
T ss_dssp HHHHHTTT-------------CSEEEEEECCC-SEEEEEEEECSSS
T ss_pred HHHHHHhC-------------CCcEEEEcCCC-CeEEEEEEEeCCC
Confidence 98877532 25799999999 6999999998864
No 29
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=99.20 E-value=4.3e-11 Score=123.21 Aligned_cols=101 Identities=22% Similarity=0.187 Sum_probs=77.3
Q ss_pred CCCHHHHHHHH-HHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 35 NVHEHVSYTLL-KEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 35 ~L~e~~ak~lL-~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
.-++...|++| +++|||+|++..+++.+++.++++++|| |+|+||... +.|+ ||.++.|++|+.+++
T Consensus 118 ~~dK~~~k~~l~~~~gip~p~~~~~~~~~~~~~~~~~~g~-P~vvKp~~g--~gg~---------Gv~~v~~~~el~~~~ 185 (433)
T 2dwc_A 118 AMHRERLRETLVKEAKVPTSRYMYATTLDELYEACEKIGY-PCHTKAIMS--SSGK---------GSYFVKGPEDIPKAW 185 (433)
T ss_dssp HHCHHHHHHHHHHTSCCCCCCEEEESSHHHHHHHHHHHCS-SEEEEECCC-----------------EEECSGGGHHHHH
T ss_pred hhCHHHHHHHHHHhcCCCCCCeeEeCCHHHHHHHHHhcCC-CEEEEECCC--cCCC---------CeEEECCHHHHHHHH
Confidence 35778899999 8999999999999999999999999999 999999733 3333 788999999999988
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEec
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMER 156 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~ 156 (443)
++++... .+ ....++||+|++++.|+.+.+.+|.
T Consensus 186 ~~~~~~~--------~~-~~~~~lvEe~i~~g~E~sv~~~~~~ 219 (433)
T 2dwc_A 186 EEAKTKA--------RG-SAEKIIVEEHIDFDVEVTELAVRHF 219 (433)
T ss_dssp HC------------------CCEEEEECCCCSEEEEECCEEEE
T ss_pred HHHHhhc--------cc-CCCCEEEEccCCCCeeEEEEEEecc
Confidence 8765421 00 1257999999998899999999875
No 30
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=99.20 E-value=7.2e-11 Score=118.88 Aligned_cols=96 Identities=20% Similarity=0.166 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHH---HHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKK---EAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEV 112 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~---ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a 112 (443)
.++..+|++|+++|||+|++..+++.+ ++.++++++|| |++|||. .+|.|+ ||.++.|++++.++
T Consensus 138 ~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~lg~-PvvVKP~--~gg~s~---------Gv~~v~~~~el~~~ 205 (357)
T 4fu0_A 138 MDKDRAHKLVSLAGISVPKSVTFKRFNEEAAMKEIEANLTY-PLFIKPV--RAGSSF---------GITKVIEKQELDAA 205 (357)
T ss_dssp HCHHHHHHHHHHTTCBCCCEEEEEGGGHHHHHHHHHHHCCS-SEEEEET--TCSSST---------TCEEESSHHHHHHH
T ss_pred hCHHHHHHHHHHCCCCCCCEEeecCCChHHHHHHHHHhcCC-CEEEEEC--CCCCCC---------ceEEeccHHhHHHH
Confidence 678899999999999999998876533 34567789999 9999996 444443 78899999999998
Q ss_pred HHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 113 AGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 113 ~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
++..+.. ...+++|+|+. |+|+.+++..|..
T Consensus 206 ~~~a~~~-------------~~~vlvE~~i~-G~e~~v~vl~~~~ 236 (357)
T 4fu0_A 206 IELAFEH-------------DTEVIVEETIN-GFEVGCAVLGIDE 236 (357)
T ss_dssp HHHHTTT-------------CSEEEEEECCC-SEEEEEEEEESSS
T ss_pred HHHHhcc-------------CCeEEEEEecC-CEEEEEEEEecCC
Confidence 8776432 25799999998 8999999998763
No 31
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=99.19 E-value=4.4e-11 Score=123.73 Aligned_cols=109 Identities=15% Similarity=0.221 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHHCCCCCCCee--ecCCHHHH-HHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFG--VAKTKKEA-GEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEV 112 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~--~v~s~~ea-~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a 112 (443)
-++...|++|+++|||+|++. .+++.+++ .++++++|| |+|+||....+ |+ ||.++.|.+|+.++
T Consensus 114 ~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~~g~-PvvvKp~~g~g--g~---------Gv~~v~~~~el~~~ 181 (449)
T 2w70_A 114 GDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGY-PVIIKASGGGG--GR---------GMRVVRGDAELAQS 181 (449)
T ss_dssp HSHHHHHHHHHHHTCCBCSBCSSCCCSCHHHHHHHHHHHCS-SEEEEETTCCT--TT---------TCEEECSHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCcCCCcccccCCHHHHHHHHHHHhCC-cEEEEECCCCC--CC---------CEEEeCCHHHHHHH
Confidence 567889999999999999997 88899999 899999999 99999974333 33 78899999999999
Q ss_pred HHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEee
Q psy12143 113 AGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIA 165 (443)
Q Consensus 113 ~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~ 165 (443)
+++++.... .. .+ ...++||+|++++.|+.+.+..|.. |.++.+
T Consensus 182 ~~~~~~~~~---~~--~~--~~~~lvEe~i~g~~e~~v~~~~~~~--G~~~~~ 225 (449)
T 2w70_A 182 ISMTRAEAK---AA--FS--NDMVYMEKYLENPRHVEIQVLADGQ--GNAIYL 225 (449)
T ss_dssp HHHHHHHHH---HH--HS--CCCEEEEECCSSCEEEEEEEEECTT--SCEEEE
T ss_pred HHHHHHHHH---hh--cC--CCcEEEEeccCCCeEEEEEEEEcCC--CCEEEE
Confidence 888765310 00 01 1479999999977999999999874 555443
No 32
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=99.19 E-value=8.9e-11 Score=125.06 Aligned_cols=105 Identities=13% Similarity=0.245 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeec--------------------------CCHHHHHHHHHHcCCCeEEEEEeecCCCCC
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVA--------------------------KTKKEAGEIAKKLNIKDIVLKAQVLAGGRG 88 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v--------------------------~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~ 88 (443)
.-++..+|++|+++|||+|++..+ ++.+|+.++++++|| |+|+||....+ |
T Consensus 171 ~~dK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~~~~g~-PvVvKp~~g~g--g 247 (554)
T 1w96_A 171 LGDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGF-PVMIKASEGGG--G 247 (554)
T ss_dssp SCSHHHHHHHHHHTTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHCS-SEEEEETTCCT--T
T ss_pred HhCHHHHHHHHHHCCCCcCCccccccccccccccccccccccccccccCCCCHHHHHHHHHHcCC-CEEEEECCCCC--C
Confidence 467888999999999999998764 789999999999999 99999974333 3
Q ss_pred ccccccCccCcEEEeCCHHHHHHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEe
Q psy12143 89 KGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLI 164 (443)
Q Consensus 89 k~~~~~~~~GGV~l~~s~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~ 164 (443)
+ ||.++.|++|+.+++++++... . ...++||+|+++++|+.+.+..|.. |.++.
T Consensus 248 ~---------Gv~~v~~~~el~~a~~~~~~~~--------~---~~~vlvEe~i~g~~e~sv~vl~d~~--G~vv~ 301 (554)
T 1w96_A 248 K---------GIRQVEREEDFIALYHQAANEI--------P---GSPIFIMKLAGRARHLEVQLLADQY--GTNIS 301 (554)
T ss_dssp T---------TEEEECSHHHHHHHHHHHHHHS--------T---TCCEEEEECCCSCEEEEEEEEECTT--SCEEE
T ss_pred c---------eEEEECCHHHHHHHHHHHHhhc--------c---CCCEEEEEecCCCcEEEEEEEEcCC--CCEEE
Confidence 3 7999999999999998876431 0 2479999999988999999999974 55543
No 33
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=99.17 E-value=1e-10 Score=119.01 Aligned_cols=97 Identities=16% Similarity=0.130 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAG 114 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~ 114 (443)
.-++...|++|+++|||+|++..+++.+|+.++++++|| |+|+||....+ |+ ||.++.|++|+.++++
T Consensus 107 ~~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~g~-P~vvKp~~g~g--g~---------Gv~~v~~~~el~~~~~ 174 (403)
T 4dim_A 107 CGDKYKMKEAFKKYNVNTARHFVVRNENELKNALENLKL-PVIVKATDLQG--SK---------GIYIAKKEEEAIDGFN 174 (403)
T ss_dssp HHCHHHHHHHHHHHTCCCCCEECCCSHHHHHHHHHTSCS-SEEEECSCC----------------CEEESSHHHHHHHHH
T ss_pred HhCHHHHHHHHHHcCCCCCCEEEeCCHHHHHHHHhcCCC-CEEEEECCCCC--CC---------CEEEECCHHHHHHHHH
Confidence 457888999999999999999999999999999999999 99999974332 32 7889999999999998
Q ss_pred HHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEe
Q psy12143 115 KMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMME 155 (443)
Q Consensus 115 ~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D 155 (443)
++.... . ...++||+|++ |.|+.+.+..+
T Consensus 175 ~~~~~~---------~--~~~~lvEe~i~-g~e~sv~~~~~ 203 (403)
T 4dim_A 175 ETMNLT---------K--RDYCIVEEFIE-GYEFGAQAFVY 203 (403)
T ss_dssp HHHHHC---------S--SSCCEEEECCC-SEEEEEEEEEE
T ss_pred HHHhcC---------c--CCcEEEEEccC-CcEEEEEEEEE
Confidence 876532 0 25699999999 68999998864
No 34
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.12 E-value=1.9e-11 Score=133.14 Aligned_cols=111 Identities=15% Similarity=0.192 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHCCCCCCCee--ecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFG--VAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEV 112 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~--~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a 112 (443)
.-++..+|++|+++|||+|++. .+++.+++.++++++|| |+|+||... +.|+ ||+++.|++|+.++
T Consensus 113 ~~dK~~~k~~l~~~GVPvpp~~~~~~~s~~e~~~~a~~igy-PvVvKp~~g--gggk---------Gv~iv~~~~el~~a 180 (681)
T 3n6r_A 113 MGDKITSKKIAQEANVSTVPGYMGLIEDADEAVKISNQIGY-PVMIKASAG--GGGK---------GMRIAWNDQEAREG 180 (681)
T ss_dssp TTSHHHHHHHHHTTTCCCCCC-----------------------------------------------------------
T ss_pred hCCHHHHHHHHHHcCcCcCCccccCcCCHHHHHHHHHhcCC-cEEEEECCC--CCCC---------CEEEECCHHHHHHH
Confidence 3678899999999999999974 78899999999999999 999999733 3333 78899999999999
Q ss_pred HHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeec
Q psy12143 113 AGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIAS 166 (443)
Q Consensus 113 ~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g 166 (443)
++++..... . ..+ ...++||+|+++.+|+.+.+..|.. |.++.++
T Consensus 181 ~~~~~~ea~---~--~fg--~~~vlvEe~I~g~rei~V~v~~d~~--G~vv~l~ 225 (681)
T 3n6r_A 181 FQSSKNEAA---N--SFG--DDRIFIEKFVTQPRHIEIQVLCDSH--GNGIYLG 225 (681)
T ss_dssp -----------------------------CCSCEEEEEEEECCSS--SCCEEEE
T ss_pred HHHHHHHHH---H--hCC--CCcEEEEeccCCCcEEEEEEEEeCC--CCEEEEe
Confidence 887754321 0 011 2579999999977999999999985 6666554
No 35
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=99.11 E-value=1.7e-10 Score=131.80 Aligned_cols=99 Identities=13% Similarity=0.093 Sum_probs=77.1
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGK 115 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~ 115 (443)
-++...+++|+++|||+|++..+++.+|+.++++++|| |+|+||....+|+ ||.++.|++++.+++++
T Consensus 673 ~DK~~~~~ll~~~GIp~P~~~~~~s~eea~~~~~~ig~-PvvVKP~~~~gG~-----------Gv~iv~~~~el~~~~~~ 740 (1073)
T 1a9x_A 673 EDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGY-PLVVRASYVLGGR-----------AMEIVYDEADLRRYFQT 740 (1073)
T ss_dssp HSHHHHHHHHHHHTCCCCCEEECCSHHHHHHHHHHHCS-SEEEEC------------------CEEEECSHHHHHHHHHH
T ss_pred hCHHHHHHHHHHcCcCCCCceEECCHHHHHHHHHHcCC-CEEEEECCCCCCC-----------CeEEECCHHHHHHHHHH
Confidence 56778899999999999999999999999999999999 9999997544433 78899999999999887
Q ss_pred HhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 116 MIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 116 l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
++... ....++||+|+++.+|+.+.+..|..
T Consensus 741 a~~~~-----------~~~~vlvEefI~g~~E~~V~~l~d~~ 771 (1073)
T 1a9x_A 741 AVSVS-----------NDAPVLLDHFLDDAVEVDVDAICDGE 771 (1073)
T ss_dssp CC-------------------EEEBCCTTCEEEEEEEEECSS
T ss_pred HHhhC-----------CCCcEEEEEccCCCcEEEEEEEEECC
Confidence 64321 12479999999976799999999874
No 36
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=99.11 E-value=2.4e-10 Score=119.53 Aligned_cols=110 Identities=12% Similarity=0.091 Sum_probs=81.3
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
..-++..+|++|+++|||+|++..+++.+++.++++++|| |+|+||... +.|+ ||.++.|++|+.+++
T Consensus 136 ~~~DK~~~k~~l~~~GIpvp~~~~v~s~ee~~~~~~~lg~-PvVVKP~~g--~gg~---------Gv~iv~~~eel~~a~ 203 (474)
T 3vmm_A 136 NARDKNKMRDAFNKAGVKSIKNKRVTTLEDFRAALEEIGT-PLILKPTYL--ASSI---------GVTLITDTETAEDEF 203 (474)
T ss_dssp HTTCHHHHHHHHHHTTSCCCCEEEECSHHHHHHHHHHSCS-SEEEEESSC--CTTT---------TCEEECCTTSHHHHH
T ss_pred HhhCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHHcCC-CEEEEECCC--CcCc---------eEEEECCHHHHHHHH
Confidence 4578899999999999999999999999999999999999 999999733 3333 788899999999998
Q ss_pred HHHhhchhhhhhcCCCC-cccCeEEEEeeeCCCe-----------eeEE-EEEEecc
Q psy12143 114 GKMIGDYLITKQTGEKG-RICNAVMVTERKYPRK-----------EYYF-AFMMERS 157 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g-~~~~~vlVE~~v~~g~-----------El~v-gv~~D~~ 157 (443)
+++..... ....+.. .....++||+|+++.. |+.+ ++..|..
T Consensus 204 ~~~~~~~~--~~~~~~a~~~~~~vlVEe~I~G~e~~~~q~~~~~~e~sv~~v~~dg~ 258 (474)
T 3vmm_A 204 NRVNDYLK--SINVPKAVTFEAPFIAEEFLQGEYGDWYQTEGYSDYISIEGIMADGE 258 (474)
T ss_dssp HHHHHHHT--TSCCCTTCCCSCSEEEEECCCBCHHHHCSSSSSCSEEEEEEEEETTE
T ss_pred HHHHHHHh--hccccccccCCCeEEEEeCCCCceeeeeecccccceeEEEEEEECCe
Confidence 88755321 0000000 0125799999999433 2656 4566655
No 37
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=99.08 E-value=6.3e-10 Score=114.01 Aligned_cols=104 Identities=32% Similarity=0.321 Sum_probs=85.1
Q ss_pred cCCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 34 ~~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
..-++..+|++|+++|||+|++..+++.+|+.++++++|| |+|+||....+ |+ ||.++.|++|+.+++
T Consensus 103 ~~~dK~~~k~~l~~~gip~p~~~~~~~~~e~~~~~~~~g~-PvvvKp~~~~g--g~---------Gv~~v~~~~el~~a~ 170 (412)
T 1vkz_A 103 LEGSKVYAKRFMKKYGIRTARFEVAETPEELREKIKKFSP-PYVIKADGLAR--GK---------GVLILDSKEETIEKG 170 (412)
T ss_dssp HHHCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHTTSCS-SEEEEESSCCS--SC---------CEEEESSHHHHHHHH
T ss_pred HhcCHHHHHHHHHHcCCCCCCEEEECCHHHHHHHHHhcCC-CEEEEeCCCCC--CC---------CEEEECCHHHHHHHH
Confidence 3468889999999999999999999999999999999999 99999974333 32 799999999999999
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
++++.... ..+. ...++||+|++ |.|+++.+.+|..
T Consensus 171 ~~~~~~~~------~~g~-~~~vlvEe~i~-G~E~sv~~~~dg~ 206 (412)
T 1vkz_A 171 SKLIIGEL------IKGV-KGPVVIDEFLA-GNELSAMAVVNGR 206 (412)
T ss_dssp HHHHHTSS------STTC-CSCEEEEECCC-SEEEEEEEEEETT
T ss_pred HHHHhhcc------ccCC-CCeEEEEECCc-CcEEEEEEEECCC
Confidence 88864210 0111 13799999999 8999999999864
No 38
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=99.07 E-value=1.6e-10 Score=118.68 Aligned_cols=105 Identities=17% Similarity=0.140 Sum_probs=76.5
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAG 114 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~ 114 (443)
.-+++..|++|+++|||+|++..+++.+|+.+ .++|| |+|+||... +.|+ ||.++.|++|+.++++
T Consensus 110 ~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~--~~~g~-P~vvKp~~g--~gs~---------Gv~~v~~~~el~~a~~ 175 (425)
T 3vot_A 110 CRNKNKTRSILQQNGLNTPVFHEFHTLADLEN--RKLSY-PLVVKPVNG--FSSQ---------GVVRVDDRKELEEAVR 175 (425)
T ss_dssp HHCHHHHHHHHHHTTCCCCCEEEESSGGGGTT--CCCCS-SEEEEESCC----------------CEEECSHHHHHHHHH
T ss_pred hhCHHHHHHHHHHCCCCCCceeccCcHHHHHH--hhcCC-cEEEEECCC--CCCC---------CceEechHHHHHHHHH
Confidence 45788899999999999999999999888753 57899 999999633 3333 7999999999999998
Q ss_pred HHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEec
Q psy12143 115 KMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMER 156 (443)
Q Consensus 115 ~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~ 156 (443)
++.......... .......++||+|++ |.|+.+.+..+.
T Consensus 176 ~~~~~~~~~~~~--~~~~~~~~lvEe~i~-G~e~sv~~~~~~ 214 (425)
T 3vot_A 176 KVEAVNQRDLNR--FVHGKTGIVAEQFID-GPEFAIETLSIQ 214 (425)
T ss_dssp HHHHHTTSSHHH--HHTTCCCEEEEECCC-SCEEEEEEEEET
T ss_pred HHHhhhhhhhhh--hccCCCcEEEEEEec-CcEEEEEEEEeC
Confidence 875422000000 001125799999998 789999887764
No 39
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=99.07 E-value=3.3e-11 Score=131.17 Aligned_cols=169 Identities=20% Similarity=0.302 Sum_probs=108.4
Q ss_pred CCHHHHHHHHHHCCCCCCCeee--cCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGV--AKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~--v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
-++..+|++|+++|||+|++.. +.+.+++.++++++|| |+|+||.. ++.|+ ||+++.|++|+.+++
T Consensus 140 ~DK~~~k~~l~~~GVpvpp~~~~~~~s~~e~~~~a~~igy-PvvvKp~~--G~Gg~---------Gv~iv~~~~el~~a~ 207 (675)
T 3u9t_A 140 GSKSAAKALMEEAGVPLVPGYHGEAQDLETFRREAGRIGY-PVLLKAAA--GGGGK---------GMKVVEREAELAEAL 207 (675)
T ss_dssp TSHHHHHHHHHHTTCCBCCCCCSCCCCTTHHHHHHHHSCS-SBCCBCCC-----------------CCCBCCTTTHHHHH
T ss_pred chHHHHHHHHHHcCcCcCCccccCCCCHHHHHHHHHhCCC-cEEEEECC--CCCCc---------cEEEECCHHHHHHHH
Confidence 5788899999999999999875 7899999999999999 99999973 33333 788899999999888
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCCC
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITV 193 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~~ 193 (443)
+++..... ...+ ...++||+|+++.+|+.+.+..|.. |.++.++ . .+. .+...+ ..+... .|..
T Consensus 208 ~~~~~ea~-----~~fg--~~~vlvEeyI~g~reiev~v~~d~~--G~vv~l~-~--rd~-s~qr~~-qk~ie~--~Pa~ 271 (675)
T 3u9t_A 208 SSAQREAK-----AAFG--DARMLVEKYLLKPRHVEIQVFADRH--GHCLYLN-E--RDC-SIQRRH-QKVVEE--APAP 271 (675)
T ss_dssp SCCCC---------------CCCBCCBCCSSCBCEEEEEEECSS--SCEEEEE-E--EEC-CCBSSS-SBCEEE--ESCS
T ss_pred HHHHHHHH-----HhcC--CCcEEEEeecCCCcEEEEEEEEcCC--CCEEEEe-c--ccc-ceeecc-ceEEEE--CCCC
Confidence 76643220 0011 2579999999977999999999974 6665543 1 011 111111 233333 3433
Q ss_pred CCCHHH-------HHHHHHHcCC-chhHHHHHHHHHHHHHhhhh--CCCeEEeeeceeE
Q psy12143 194 GITKEQ-------ALKVADAVGL-KAKRDITAEMLIKMYALFIS--KDASLIEINPYAE 242 (443)
Q Consensus 194 ~l~~~~-------a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~--~~~~~lEINPl~v 242 (443)
.++.+. +.++++.+|+ |.-.- +++.+ .+..++||||.+-
T Consensus 272 ~l~~~~~~~l~~~a~~~~~alg~~G~~~v----------Ef~~~~dG~~~~iEiNpR~~ 320 (675)
T 3u9t_A 272 GLGAELRRAMGEAAVRAAQAIGYVGAGTV----------EFLLDERGQFFFMEMNTRLQ 320 (675)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCCSEEEE----------ECCBCTTSCBCBCEEESSCC
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCccceEE----------EEEEcCCCCEEEEecccccc
Confidence 355543 4455566676 42110 11222 2467899999873
No 40
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=99.06 E-value=1.8e-10 Score=115.31 Aligned_cols=94 Identities=18% Similarity=0.235 Sum_probs=77.1
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAG 114 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~ 114 (443)
..++...|++|+++|||+|++..+++.+ ..+.+++|| |+|+||. .++.++ ||.++.+++++.++++
T Consensus 130 ~~dK~~~k~~l~~~Gip~p~~~~~~~~~--~~~~~~lg~-PvvvKP~--~~~~s~---------Gv~~v~~~~el~~a~~ 195 (346)
T 3se7_A 130 CMDKSLTYLVARSAGIATPNFWTVTADE--KIPTDQLTY-PVFVKPA--RSGSSF---------GVSKVAREEDLQGAVE 195 (346)
T ss_dssp HHSHHHHHHHHHHTTCBCCCEEEEETTS--CCCTTTCCS-SEEEEES--SCCTTT---------TCEEECSHHHHHHHHH
T ss_pred HhCHHHHHHHHHHcCcCcCCEEEEcCcH--HHHHHhcCC-CEEEEeC--CCCCCc---------CEEEECCHHHHHHHHH
Confidence 3678889999999999999999998765 334568898 9999996 333333 7888999999999988
Q ss_pred HHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEec
Q psy12143 115 KMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMER 156 (443)
Q Consensus 115 ~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~ 156 (443)
+++.. ...++||+|++ |.|+++++..|.
T Consensus 196 ~~~~~-------------~~~vlvEe~I~-G~E~~v~vl~~~ 223 (346)
T 3se7_A 196 AAREY-------------DSKVLIEEAVI-GTEIGCAVMGNG 223 (346)
T ss_dssp HHTTT-------------CSEEEEEECCC-SEEEEEEEEEET
T ss_pred HHHhC-------------CCcEEEEeCcC-CEEEEEEEEecC
Confidence 76432 25799999999 899999999985
No 41
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=99.04 E-value=5.2e-10 Score=112.96 Aligned_cols=97 Identities=18% Similarity=0.279 Sum_probs=82.1
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHH----HHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKK----EAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAE 110 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~----ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~ 110 (443)
..++..+|++|+++|||+|++..+++.+ ++.++++++|| |+|+||. .++.++ ||.++.|++|+.
T Consensus 138 ~~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~lg~-PvvVKP~--~ggss~---------Gv~~v~~~~el~ 205 (364)
T 3i12_A 138 CMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGL-PLFVKPA--NQGSSV---------GVSKVANEAQYQ 205 (364)
T ss_dssp HHCHHHHHHHHHHTTCCBCCEEEEETTTGGGCCHHHHHHHHCS-SEEEEET--TCCTTT---------TCEEESSHHHHH
T ss_pred HHCHHHHHHHHHHCCCCCCCEEEEEccccchhhHHHHHHhcCC-CEEEEEC--CCCCCc---------CeEEeCCHHHHH
Confidence 3688899999999999999999998877 78888899999 9999996 444433 788899999999
Q ss_pred HHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 111 EVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 111 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
+++++++.. ...++||+|++ |+|+++++..|..
T Consensus 206 ~a~~~a~~~-------------~~~vlVEe~I~-G~E~~v~vl~~~~ 238 (364)
T 3i12_A 206 QAVALAFEF-------------DHKVVVEQGIK-GREIECAVLGNDN 238 (364)
T ss_dssp HHHHHHHHH-------------CSEEEEEECCC-SEEEEEEEEESSS
T ss_pred HHHHHHHhc-------------CCcEEEEcCcC-CeEEEEEEEeCCC
Confidence 998877542 25799999999 5999999998863
No 42
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=99.03 E-value=1.3e-10 Score=133.23 Aligned_cols=169 Identities=16% Similarity=0.199 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHCCCCCCCee--ecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFG--VAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~--~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
-++..+|++|+++|||+|++. .+++.+++.++++++|| |+|+||....+ |+ ||+++.|++|+.+++
T Consensus 133 ~DK~~~k~~l~~~GIPvp~~~~~~v~s~eea~~~a~~igy-PvVVKp~~g~G--G~---------Gv~iv~s~eEL~~a~ 200 (1165)
T 2qf7_A 133 GNKVAARNLAISVGVPVVPATEPLPDDMAEVAKMAAAIGY-PVMLKASWGGG--GR---------GMRVIRSEADLAKEV 200 (1165)
T ss_dssp HSHHHHHHHHHHTTCCBC--------------------------------------------------------------
T ss_pred CCHHHHHHHHHHcCCCCCCeeCcCCCCHHHHHHHHHhcCC-CEEEEeCCCCC--CC---------CEEEECCHHHHHHHH
Confidence 578889999999999999998 78899999999999999 99999974433 33 788899999999998
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCCC
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITV 193 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~~ 193 (443)
++++.... ...+ ...++||+|+++++|+++.+..|.. |.++.+... ...+.+. ........|..
T Consensus 201 ~~~~~~a~-----~~fg--~~~vlVEefI~gg~EisV~vl~D~~--G~vv~l~~r----~~s~~r~---~~~~~e~~Pa~ 264 (1165)
T 2qf7_A 201 TEAKREAM-----AAFG--KDEVYLEKLVERARHVESQILGDTH--GNVVHLFER----DCSVQRR---NQKVVERAPAP 264 (1165)
T ss_dssp --------------------------CCCSSEEEEEEEEEECTT--SCEEEEEEE----EEEEEET---TEEEEEEESCT
T ss_pred HHHHHHHH-----hhcC--CCcEEEEEeccCCcEEEEEEEEcCC--CcEEEEEee----cccceec---ccceEEecccc
Confidence 87754320 0011 2579999999988999999999975 555433201 0111111 11122334543
Q ss_pred CCCHH-------HHHHHHHHcCC-chhHHHHHHHHHHHHHhhhh-C--CCeEEeeeceeE
Q psy12143 194 GITKE-------QALKVADAVGL-KAKRDITAEMLIKMYALFIS-K--DASLIEINPYAE 242 (443)
Q Consensus 194 ~l~~~-------~a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~-~--~~~~lEINPl~v 242 (443)
.++.+ .+.++++.+|+ |.-. .+++.+ . +...+||||.+-
T Consensus 265 ~l~~~~~~~i~~~a~~i~~alg~~G~~~----------vEf~vd~~dg~~~~iEiNpR~~ 314 (1165)
T 2qf7_A 265 YLSEAQRQELAAYSLKIAGATNYIGAGT----------VEYLMDADTGKFYFIEVNPRIQ 314 (1165)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCCEEEE----------EEEEEETTTTEEEEEEEECSCC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCccee----------EEEEEECCCCCEEEEEEEcCCC
Confidence 36653 45566667776 4211 122333 2 367899999763
No 43
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=99.02 E-value=1.4e-09 Score=111.33 Aligned_cols=103 Identities=24% Similarity=0.289 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAG 114 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~ 114 (443)
.-++...|++|+++|||+|++..+++.+++.++++++|| |+|+||.... .|+ ||.++.|++|+.++++
T Consensus 100 ~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~-P~vvKp~~~~--~g~---------Gv~~v~~~~el~~~~~ 167 (422)
T 2xcl_A 100 EGSKQFAKDLMKKYDIPTAEYETFTSFDEAKAYVQEKGA-PIVIKADGLA--AGK---------GVTVAMTEEEAIACLH 167 (422)
T ss_dssp HHCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHHCS-SEEEEESSCG--GGT---------CEEEESSHHHHHHHHH
T ss_pred hcCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHhcCC-CEEEEeCCCC--CCC---------cEEEECCHHHHHHHHH
Confidence 357888999999999999999999999999999999999 9999996433 232 7999999999999998
Q ss_pred HHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 115 KMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 115 ~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
+++.... .+.....++||+|++ |.|+.+.+.+|..
T Consensus 168 ~~~~~~~-------~g~~~~~~lvEe~i~-g~E~sv~~~~dG~ 202 (422)
T 2xcl_A 168 DFLEDEK-------FGDASASVVIEEYLS-GEEFSLMAFVKGE 202 (422)
T ss_dssp HHHTSCT-------TGGGGSSEEEEECCC-SEEEEEEEEEETT
T ss_pred HHHhhhh-------ccCCCCeEEEEECCc-CcEEEEEEEEcCC
Confidence 8865210 111125799999999 8999999998753
No 44
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.01 E-value=1.4e-10 Score=133.13 Aligned_cols=110 Identities=23% Similarity=0.296 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHCCCCCCCe-eecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPF-GVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAG 114 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~-~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~ 114 (443)
-++..+|++|+++|||+|++ ..+++.+|+.++++++|| |+|+||....+ |+ ||.++.|++|+.++++
T Consensus 143 ~DK~~ak~ll~~aGIPvpp~~~~v~s~eea~~~a~~iGy-PvVVKP~~GgG--Gk---------GV~iv~s~eEL~~a~~ 210 (1236)
T 3va7_A 143 GLKHSAREIAERAKVPLVPGSGLIKDAKEAKEVAKKLEY-PVMVKSTAGGG--GI---------GLQKVDSEDDIERVFE 210 (1236)
T ss_dssp HSTTHHHHHHHHTTCCCCC-------------------------------------------------------------
T ss_pred cCHHHHHHHHHHcCCCCCCeeEecCCHHHHHHHHHHcCC-CEEEEeCCCCC--CC---------CEEEECCHHHHHHHHH
Confidence 35677999999999999885 788999999999999999 99999974333 33 7888999999999988
Q ss_pred HHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeec
Q psy12143 115 KMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIAS 166 (443)
Q Consensus 115 ~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g 166 (443)
++..... . ..+ ...++||+|+++++|+++.+..|.. |.++.++
T Consensus 211 ~~~~~a~---~--~~~--~~~vlVEeyI~G~rEisV~vl~Dg~--g~vv~l~ 253 (1236)
T 3va7_A 211 TVQHQGK---S--YFG--DAGVFMERFVNNARHVEIQMMGDGF--GKAIAIG 253 (1236)
T ss_dssp -----------------------------CCEEEEEEEEEESS--SCEEEEE
T ss_pred HHHHHHH---h--ccC--CCcEEEeeccCCCeEEEEEEEecCC--ceEEEEe
Confidence 7754320 0 011 2579999999977999999999985 6666554
No 45
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=99.00 E-value=2.1e-09 Score=110.19 Aligned_cols=101 Identities=27% Similarity=0.361 Sum_probs=83.4
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGK 115 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~ 115 (443)
-++...|++|+++|||+|++..+++.+++.++++++|| |+|+||....+ |+ ||.++.|++|+.+++++
T Consensus 101 ~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~-PvvvKp~~g~g--g~---------Gv~~v~~~~el~~~~~~ 168 (424)
T 2yw2_A 101 GSKAFAKTFMKKYGIPTARYEVFTDFEKAKEYVEKVGA-PIVVKADGLAA--GK---------GAVVCETVEKAIETLDR 168 (424)
T ss_dssp HCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHHCS-SEEEEESSCCT--TC---------SEEEESSHHHHHHHHHH
T ss_pred hCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHHcCC-cEEEEeCCCCC--CC---------CEEEECCHHHHHHHHHH
Confidence 47888999999999999999999999999999999999 99999964332 32 79999999999999988
Q ss_pred HhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEec
Q psy12143 116 MIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMER 156 (443)
Q Consensus 116 l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~ 156 (443)
++.... .+.....++||+|++ |.|+.+.+..|.
T Consensus 169 ~~~~~~-------~g~~~~~~lvEe~i~-g~E~sv~~~~~G 201 (424)
T 2yw2_A 169 FLNKKI-------FGKSSERVVIEEFLE-GEEASYIVMING 201 (424)
T ss_dssp HHTSCT-------TGGGGSSEEEEECCC-SEEEEEEEEEET
T ss_pred HHhhhh-------ccCCCCeEEEEECCC-CcEEEEEEEEcC
Confidence 865210 111125799999999 899999999875
No 46
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=99.00 E-value=1.9e-09 Score=111.65 Aligned_cols=102 Identities=27% Similarity=0.303 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGK 115 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~ 115 (443)
-++...|++|+++|||+|++..+++.+++.++++++|| |+|+||....+ |+ ||.++.|++|+.+++++
T Consensus 122 ~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~-PvVvKp~~~~g--g~---------Gv~~v~~~~el~~~~~~ 189 (451)
T 2yrx_A 122 GSKAFAKELMKKYGIPTADHAAFTSYEEAKAYIEQKGA-PIVIKADGLAA--GK---------GVTVAQTVEEALAAAKA 189 (451)
T ss_dssp HCHHHHHHHHHHTTCCBCCEEEESCHHHHHHHHHHHCS-SEEEEECC------C---------CEEEESSHHHHHHHHHH
T ss_pred hCHHHHHHHHHHcCCCCCCeEEECCHHHHHHHHHhcCC-cEEEEeCCCCC--CC---------cEEEECCHHHHHHHHHH
Confidence 47888999999999999999999999999999999999 99999974433 32 79999999999999988
Q ss_pred HhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 116 MIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 116 l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
++.... .+.....++||+|++ |.|+.+.+.+|..
T Consensus 190 ~~~~~~-------~g~~~~~~lvEe~i~-G~E~sv~~~~dG~ 223 (451)
T 2yrx_A 190 ALVDGQ-------FGTAGSQVVIEEYLE-GEEFSFMAFVNGE 223 (451)
T ss_dssp HHHHSC-------CBTTBCCEEEEECCC-SEEEEEEEEEETT
T ss_pred HHhccc-------cCCCCCeEEEEECCc-CcEEEEEEEEcCC
Confidence 765210 111125799999999 8999999998754
No 47
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=98.99 E-value=6.6e-10 Score=122.01 Aligned_cols=112 Identities=20% Similarity=0.232 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHCCCCCCCeeecCCHHHHHHHH-HHcCCCeEEEEEeecCCCCCccccccCccCcEEEeC---CHHHHHHH
Q psy12143 37 HEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIA-KKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVD---TPEEAEEV 112 (443)
Q Consensus 37 ~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a-~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~---s~ee~~~a 112 (443)
++..+|++|+++|||+|++.++++.+++.+++ +.+|| |+|+||. .++.|+ ||.++. |.+++.++
T Consensus 484 DK~~tk~lL~~~GIPvP~~~~~~~~~ea~~~~~~~~g~-PvVVKP~--~G~~G~---------GV~iv~~~~s~eel~~a 551 (750)
T 3ln6_A 484 NKVVTKKILDEKHFPTPFGDEFTDRKEALNYFSQIQDK-PIVVKPK--STNFGL---------GISIFKTSANLASYEKA 551 (750)
T ss_dssp TSHHHHHHHHHTTCCCCCCCCEETTTTHHHHHHHSSSS-CEEEEET--TCCSSS---------SCEEESSCCCHHHHHHH
T ss_pred CHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHhcCC-cEEEEeC--CCCCCC---------CEEEEeCCCCHHHHHHH
Confidence 78889999999999999999999999987777 67898 9999996 444454 788876 99999999
Q ss_pred HHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcE-----EeecCCCCcchhcc
Q psy12143 113 AGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPV-----LIASSQGGVNIEEV 176 (443)
Q Consensus 113 ~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpv-----v~~g~~GGv~vE~l 176 (443)
++.++.. ...++||+|++ |.|+++.+..|... +++ -+.| -|+..|+.+
T Consensus 552 ~~~~~~~-------------~~~vlVEefI~-G~E~~v~Vvgg~vv-aa~~r~p~~v~G-dG~~tI~eL 604 (750)
T 3ln6_A 552 IDIAFTE-------------DSAILVEEYIE-GTEYRFFVLEGDCI-AVLLRVAANVVG-DGIHTISQL 604 (750)
T ss_dssp HHHHHHH-------------CSEEEEEECCC-SEEEEEEEETTEEE-EEEEEECCEEEC-CTTCCHHHH
T ss_pred HHHHHhh-------------CCcEEEEeccC-CCEEEEEEECCEEE-EEEEEecceEec-CCccCHHHH
Confidence 9887532 25799999999 89999999977653 332 2344 788888765
No 48
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=98.99 E-value=3.8e-10 Score=114.08 Aligned_cols=90 Identities=21% Similarity=0.290 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAG 114 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~ 114 (443)
.-++...|++|+++|||+|++..+++.++ +++++|| |+|+||.... ..|+ ||.++.|.+|+.++++
T Consensus 98 ~~dK~~~~~~l~~~gip~p~~~~~~~~~~---~~~~~~~-P~vvKp~~~~-y~g~---------Gv~~v~~~~el~~~~~ 163 (380)
T 3ax6_A 98 IQDKFVQKEFLKKNGIPVPEYKLVKDLES---DVREFGF-PVVQKARKGG-YDGR---------GVFIIKNEKDLENAIK 163 (380)
T ss_dssp HHSHHHHHHHHHHTTCCCCCEEECSSHHH---HHHTTCS-SEEEEESCCC---------------EEEECSGGGGGGCCC
T ss_pred hcCHHHHHHHHHHcCCCCCCeEEeCCHHH---HHHhcCC-CEEEEecCCC-CCCC---------CeEEECCHHHHHHHhc
Confidence 46788899999999999999999999887 6678998 9999997332 0333 7888988887643221
Q ss_pred HHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 115 KMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 115 ~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
..++||+|++++.|+.+.+.+|..
T Consensus 164 -------------------~~~lvEe~i~~g~e~sv~~~~~~~ 187 (380)
T 3ax6_A 164 -------------------GETYLEEFVEIEKELAVMVARNEK 187 (380)
T ss_dssp -------------------SSEEEEECCCEEEEEEEEEEECSS
T ss_pred -------------------CCEEEEeccCCCeeEEEEEEECCC
Confidence 469999999978999999999864
No 49
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=98.98 E-value=1.3e-10 Score=132.89 Aligned_cols=169 Identities=19% Similarity=0.256 Sum_probs=108.6
Q ss_pred CCHHHHHHHHHHCCCCCCCee--ecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFG--VAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~--~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
-++..+|++|+++|||+|++. .+++.+++.++++++|| |+|+||... +.|+ ||+++.|++|+.+++
T Consensus 117 ~DK~~~r~ll~~aGIPvpp~~~~~v~s~eea~~~a~~iGy-PvVVKP~~G--gGg~---------Gv~vv~s~eeL~~a~ 184 (1150)
T 3hbl_A 117 GDKVKARTTAIKADLPVIPGTDGPIKSYELAKEFAEEAGF-PLMIKATSG--GGGK---------GMRIVREESELEDAF 184 (1150)
T ss_dssp HSHHHHHHHHHHTTCCBCCBCSSCBCSSSTTTTTGGGTCS-SEEEECCC------------------CEECCSSSCTHHH
T ss_pred CCHHHHHHHHHHcCcCCCCccccCCCCHHHHHHHHHHcCC-CEEEEeCCC--CCCC---------CEEEECCHHHHHHHH
Confidence 578899999999999999998 78899999999999999 999999733 3333 788899999999988
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEEeecCCCCcchhcccccCCCeEEEEecCCCC
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITV 193 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv~~g~~GGv~vE~l~~~~~d~v~~~~l~p~~ 193 (443)
+++..... . ..+ ...++||+|+++.+|+.+.+..|.. |.++.++ .. +. .+...+ ..+ ....|..
T Consensus 185 ~~a~~~a~---~--~fg--~~~vlVEeyI~G~reieV~vl~d~~--G~vv~l~-er--~~-s~qr~~-~k~--~e~~Pa~ 248 (1150)
T 3hbl_A 185 HRAKSEAE---K--SFG--NSEVYIERYIDNPKHIEVQVIGDEH--GNIVHLF-ER--DC-SVQRRH-QKV--VEVAPSV 248 (1150)
T ss_dssp HSSSSSCC-------------CBEEECCCSSCEEEEEEEEECSS--SCEEEEE-EE--EE-EEESSS-CEE--EEESSCS
T ss_pred HHHHHHHH---h--hcC--CCcEEEEEccCCCcEEEEEEEEeCC--CCEEEEE-ee--cc-ceeccC-cee--EEecCCC
Confidence 87654320 0 011 2579999999977999999999984 6665443 11 10 122111 222 2345654
Q ss_pred CCCHHH-------HHHHHHHcCC-chhHHHHHHHHHHHHHhhhh-CCCeEEeeeceeE
Q psy12143 194 GITKEQ-------ALKVADAVGL-KAKRDITAEMLIKMYALFIS-KDASLIEINPYAE 242 (443)
Q Consensus 194 ~l~~~~-------a~~~l~~lg~-g~d~~~l~~~l~~l~~l~~~-~~~~~lEINPl~v 242 (443)
.++.+. +.++++.+|+ |.-.- +++.+ .+..++||||.+-
T Consensus 249 ~l~~~~~~~l~~~a~~~~~alG~~G~~~v----------Eflvd~d~~y~iEINpR~~ 296 (1150)
T 3hbl_A 249 GLSPTLRQRICDAAIQLMENIKYVNAGTV----------EFLVSGDEFFFIEVNPRVQ 296 (1150)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCCEEEEE----------EEEEETTEEEEEEEECSCC
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCceEEE----------EEEEECCeEEEEEEeCCCC
Confidence 466643 4455556676 42110 11222 2566899999873
No 50
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=98.96 E-value=2.5e-09 Score=109.40 Aligned_cols=97 Identities=22% Similarity=0.287 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGK 115 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~ 115 (443)
-++...|++|+++|||+|++..+++.+++.++++++|| |+|+||.... .|+ ||.++.|++|+.+++++
T Consensus 100 ~dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~-P~vvKp~~~~--gg~---------Gv~~v~~~~el~~~~~~ 167 (417)
T 2ip4_A 100 GSKAFAKGLMERYGIPTARYRVFREPLEALAYLEEVGV-PVVVKDSGLA--AGK---------GVTVAFDLHQAKQAVAN 167 (417)
T ss_dssp HCHHHHHHHHHHTCCCBCCEEEESSHHHHHHHHHHHCS-SEEEECTTSC--SST---------TCEEESCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCCCCeeeeCCHHHHHHHHHHcCC-CEEEEECCCC--CCC---------CEEEeCCHHHHHHHHHH
Confidence 47888999999999999999999999999999999999 9999996333 232 78899999999999988
Q ss_pred HhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEec
Q psy12143 116 MIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMER 156 (443)
Q Consensus 116 l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~ 156 (443)
++... .+ ..++||+|++ |.|+.+.+.+|.
T Consensus 168 ~~~~~--------~~---~~~lvEe~i~-g~E~sv~~~~~G 196 (417)
T 2ip4_A 168 ILNRA--------EG---GEVVVEEYLE-GEEATVLALTDG 196 (417)
T ss_dssp HTTSS--------SC---CCEEEEECCC-SCEEEEEEEESS
T ss_pred HHhhc--------cC---CeEEEEECcc-CcEEEEEEEEeC
Confidence 75321 11 5799999999 889999999864
No 51
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=98.95 E-value=3.4e-09 Score=109.72 Aligned_cols=101 Identities=20% Similarity=0.276 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCe-EEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKD-IVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAG 114 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~P-vVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~ 114 (443)
-++...|++|+++|||+|++..+++.+++.++++++|| | +|+||....+ |+ ||.++.|++|+.++++
T Consensus 127 ~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~g~-P~vvvKp~~~~g--g~---------Gv~~v~~~~el~~~~~ 194 (452)
T 2qk4_A 127 SSKRFAKEFMDRHGIPTAQWKAFTKPEEACSFILSADF-PALVVKASGLAA--GK---------GVIVAKSKEEACKAVQ 194 (452)
T ss_dssp HBHHHHHHHHHHTTCCBCCEEEESSHHHHHHHHHHCSS-CEEEEEESBC-----C---------CEEECSSHHHHHHHHH
T ss_pred cCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHhCCC-CeEEEEeCCCCC--CC---------CEEEeCCHHHHHHHHH
Confidence 57788999999999999999999999999999999999 9 9999974433 33 7999999999999998
Q ss_pred HHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEec
Q psy12143 115 KMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMER 156 (443)
Q Consensus 115 ~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~ 156 (443)
+++.... .+.....++||+|++ |.|+.+.+.+|.
T Consensus 195 ~~~~~~~-------~g~~~~~~lvEe~i~-G~E~sv~~~~dG 228 (452)
T 2qk4_A 195 EIMQEKA-------FGAAGETIVIEELLD-GEEVSCLCFTDG 228 (452)
T ss_dssp HHTTC--------------CCEEEEECCC-SEEEEEEEEECS
T ss_pred HHHhhhh-------ccCCCCeEEEEECCC-CCeEEEEEEECC
Confidence 8764210 111125799999999 899999999864
No 52
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=98.95 E-value=2.9e-09 Score=107.96 Aligned_cols=96 Identities=19% Similarity=0.198 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHH----HHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKE----AGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEE 111 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~e----a~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~ 111 (443)
.+++..|++|+++|||+|++..+++.++ +.++++++|| |+||||.. ++.|+ ||.++.|++++.+
T Consensus 134 ~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~~g~-PvvVKP~~--~~~s~---------Gv~~v~~~~el~~ 201 (377)
T 1ehi_A 134 FDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGN-IVFVKAAN--QGSSV---------GISRVTNAEEYTE 201 (377)
T ss_dssp HSHHHHHHHHHTTTCCCCCEEEECTTGGGGCCHHHHHHHHCS-CEEEEESS--CCTTT---------TEEEECSHHHHHH
T ss_pred cCHHHHHHHHHHcCCCCCCEEEEeccccchHHHHHHHHhcCC-CEEEEeCC--CCCCc---------CEEEeCCHHHHHH
Confidence 5788899999999999999999987654 6677788999 99999973 33333 7899999999999
Q ss_pred HHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEec
Q psy12143 112 VAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMER 156 (443)
Q Consensus 112 a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~ 156 (443)
++++++.. ...++||+|+++.+|+++++..|.
T Consensus 202 a~~~~~~~-------------~~~vlvEe~I~G~~E~~v~vl~~~ 233 (377)
T 1ehi_A 202 ALSDSFQY-------------DYKVLIEEAVNGARELEVGVIGND 233 (377)
T ss_dssp HHHHHTTT-------------CSCEEEEECCCCSCEEEEEEEESS
T ss_pred HHHHHHhc-------------CCcEEEEcCCCCCceEEEEEEcCC
Confidence 98876432 146999999994499999999885
No 53
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=98.93 E-value=3.2e-09 Score=108.08 Aligned_cols=95 Identities=12% Similarity=0.185 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHCC-CCCCCeeecCCH----HHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHH
Q psy12143 36 VHEHVSYTLLKEGG-IPVPPFGVAKTK----KEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAE 110 (443)
Q Consensus 36 L~e~~ak~lL~~~G-Ipv~~~~~v~s~----~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~ 110 (443)
.++..+|++|+++| ||+|++..+++. +++.++++++|| |+||||. .++.++ ||.++.|++|+.
T Consensus 160 ~DK~~~k~~l~~~G~Ipvp~~~~~~~~~~~~~~~~~~~~~lg~-PvvVKP~--~ggss~---------GV~~v~~~~el~ 227 (383)
T 3k3p_A 160 MDKITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIY-PVFVKPA--NMGSSV---------GISKAENRTDLK 227 (383)
T ss_dssp HCHHHHHHHHHHHCCCCBCCEEEEETTSCHHHHHHHHHHHCCS-SEEEEEC--C---------------CEEESSHHHHH
T ss_pred hCHHHHHHHHHhCCCcCCCCEEEEeCccchhHHHHHHHHhcCC-CEEEEeC--CCCCCC---------CEEEECCHHHHH
Confidence 57889999999999 999999998765 567788899999 9999996 333333 788899999999
Q ss_pred HHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEec
Q psy12143 111 EVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMER 156 (443)
Q Consensus 111 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~ 156 (443)
+++++++.. ...++||+|++ |+|+.+++..|.
T Consensus 228 ~al~~a~~~-------------~~~vlVEe~I~-G~E~~v~vl~d~ 259 (383)
T 3k3p_A 228 QAIALALKY-------------DSRVLIEQGVD-AREIEVGILGNT 259 (383)
T ss_dssp HHHHHHHHH-------------CSEEEEEECCC-SEEEEEEEEESS
T ss_pred HHHHHHHhC-------------CCeEEEEcCCC-CeEEEEEEEeCC
Confidence 998877532 24799999999 899999999874
No 54
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=98.91 E-value=4.2e-09 Score=106.79 Aligned_cols=95 Identities=19% Similarity=0.255 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHH----HHHHHHHcCCCe-EEEEEeecCCCCCccccccCccCcEEEeCCHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKE----AGEIAKKLNIKD-IVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAE 110 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~e----a~~~a~~lg~~P-vVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~ 110 (443)
.++..+|++|+++|||+|++..+++.++ +.++.+++|| | +||||. .+|.++ ||.++.|++|+.
T Consensus 139 ~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~~~lg~-P~vvVKP~--~ggss~---------Gv~~v~~~~eL~ 206 (372)
T 3tqt_A 139 MEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGT-SELFVKAV--SLGSSV---------ATLPVKTETEFT 206 (372)
T ss_dssp HSHHHHHHHHHHTTCCBCCCEEECTTSCCTTHHHHHHHHC----CEEEEES--SCCSGG---------GEEEECSHHHHH
T ss_pred hCHHHHHHHHHHCCcCCCCEEEEechhhhhhHHHHHHHhcCC-CeEEEEEC--CCCCCC---------CEEEECCHHHHH
Confidence 5788899999999999999999987654 4567789999 9 999996 444443 799999999999
Q ss_pred HHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEec
Q psy12143 111 EVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMER 156 (443)
Q Consensus 111 ~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~ 156 (443)
+++++.+.. ...++||+|++ |+|+++++..|.
T Consensus 207 ~a~~~a~~~-------------~~~vlVEe~I~-G~E~~v~vl~~~ 238 (372)
T 3tqt_A 207 KAVKEVFRY-------------DDRLMVEPRIR-GREIECAVLGNG 238 (372)
T ss_dssp HHHHHHTTT-------------CSCEEEEECCC-SEEEEEEEEESS
T ss_pred HHHHHHHhc-------------CCCEEEECCCC-CEEEEEEEEeCC
Confidence 998876432 24699999999 899999999886
No 55
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=98.88 E-value=2.1e-09 Score=105.16 Aligned_cols=96 Identities=17% Similarity=0.181 Sum_probs=76.9
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHHHHH-HHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGE-IAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~-~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
..++..+|++|+++|||+|++.++++.+++.. +++++|| |+|+||.... .|+ ||.++.+.+++.+++
T Consensus 95 ~~dK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~-P~vvKP~~~~--~s~---------Gv~~v~~~~el~~~~ 162 (307)
T 3r5x_A 95 CMDKNISKKILRYEGIETPDWIELTKMEDLNFDELDKLGF-PLVVKPNSGG--SSV---------GVKIVYDKDELISML 162 (307)
T ss_dssp HHCHHHHHHHHHHTTCCCCCEEEEESSSCCCHHHHHHHCS-SEEEEECC------C---------CCEEECSHHHHHHHH
T ss_pred HcCHHHHHHHHHHCCCCCCCEEEEeChhhhhHHHHHhcCC-CEEEEeCCCC--CCC---------CEEEeCCHHHHHHHH
Confidence 46788899999999999999999988776653 7788999 9999997433 232 788899999999998
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEec
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMER 156 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~ 156 (443)
++++.. ...++||+|++ |.|+.+.+..+.
T Consensus 163 ~~~~~~-------------~~~~lvee~i~-G~e~~v~v~~g~ 191 (307)
T 3r5x_A 163 ETVFEW-------------DSEVVIEKYIK-GEEITCSIFDGK 191 (307)
T ss_dssp HHHHHH-------------CSEEEEEECCC-SEEEEEEEETTE
T ss_pred HHHHhc-------------CCCEEEECCcC-CEEEEEEEECCE
Confidence 887542 25799999999 799999996443
No 56
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=98.88 E-value=8.4e-09 Score=103.83 Aligned_cols=95 Identities=16% Similarity=0.187 Sum_probs=78.5
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHH-------HHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKK-------EAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEE 108 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~-------ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee 108 (443)
.++...|++|+++|||+|++..+++.+ ++.++++++|| |+|+||. .++.|+ ||.++.+.++
T Consensus 128 ~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~~~~~~g~-PvvvKP~--~g~~s~---------Gv~~v~~~~e 195 (364)
T 2i87_A 128 MDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNY-PVFVKPA--NLGSSV---------GISKCNNEAE 195 (364)
T ss_dssp HSHHHHHHHHHHHTCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCS-SEEEEES--SCSSCT---------TCEEESSHHH
T ss_pred cCHHHHHHHHHHCCCCCCCEEEEechhhcccchhHHHHHHHhcCC-CEEEEeC--CCCCCC---------CEEEECCHHH
Confidence 577888999999999999999998765 46677788999 9999996 333333 7889999999
Q ss_pred HHHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEec
Q psy12143 109 AEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMER 156 (443)
Q Consensus 109 ~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~ 156 (443)
+.++++.++.. ...++||+|++ |.|+.+.+..|.
T Consensus 196 l~~a~~~~~~~-------------~~~~lvEe~I~-G~E~~v~vl~~~ 229 (364)
T 2i87_A 196 LKEGIKEAFQF-------------DRKLVIEQGVN-AREIEVAVLGND 229 (364)
T ss_dssp HHHHHHHHHTT-------------CSEEEEEECCC-CEEEEEEEEESS
T ss_pred HHHHHHHHHhc-------------CCeEEEEeCcc-CeEEEEEEEcCC
Confidence 99988876431 15799999999 799999999886
No 57
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=98.83 E-value=4.6e-09 Score=106.48 Aligned_cols=96 Identities=17% Similarity=0.287 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHH--HHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKE--AGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~e--a~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
.++...|++|+++|||+|++..+++.++ .....+++|| |+||||. .++.++ ||.++.|++|+.+++
T Consensus 150 ~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~~~lg~-PvvVKP~--~ggss~---------GV~~v~~~~eL~~a~ 217 (373)
T 3lwb_A 150 MDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGL-PVFVKPA--RGGSSI---------GVSRVSSWDQLPAAV 217 (373)
T ss_dssp HBHHHHHHHHHHTTCCBCCEEEECTTCCCCCHHHHHHHCS-CEEEEES--BCSTTT---------TCEEECSGGGHHHHH
T ss_pred cCHHHHHHHHHHcCcCCCCEEEEECcccchhHHHHHhcCC-CEEEEeC--CCCCCC---------CEEEeCCHHHHHHHH
Confidence 5788899999999999999999987664 2344778999 9999996 333333 788999999999998
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
+.++.. ...++||+|++ |+|+.+++..|..
T Consensus 218 ~~a~~~-------------~~~vlVEe~I~-G~E~~v~vl~~~~ 247 (373)
T 3lwb_A 218 ARARRH-------------DPKVIVEAAIS-GRELECGVLEMPD 247 (373)
T ss_dssp HHHHTT-------------CSSEEEEECCE-EEEEEEEEEECTT
T ss_pred HHHHhc-------------CCCEEEeCCCC-CeEEEEEEEECCC
Confidence 877532 14699999999 8999999999874
No 58
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=98.79 E-value=7.2e-09 Score=113.71 Aligned_cols=95 Identities=19% Similarity=0.228 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHCCCCCCCeeecCCHHHHHHHH-HHcCCCeEEEEEeecCCCCCccccccCccCcEEEe----CCHHHHHH
Q psy12143 37 HEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIA-KKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMV----DTPEEAEE 111 (443)
Q Consensus 37 ~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a-~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~----~s~ee~~~ 111 (443)
++..+|++|+++|||||++..+++.+++.+++ +++|| |+|+||.. ++.|+ ||.++ .|.+++.+
T Consensus 489 DK~~tk~lL~~~GIPvP~~~~~~~~~ea~~~~~~~~g~-PvVVKP~~--g~~G~---------GV~iv~~~v~~~eel~~ 556 (757)
T 3ln7_A 489 NKVVTKKVLQKAGFNVPQSVEFTSLEKAVASYALFENR-AVVIKPKS--TNYGL---------GITIFQQGVQNREDFAK 556 (757)
T ss_dssp HSHHHHHHHHHHTCCCCCEEEESCHHHHHHGGGGSSSS-CEEEEESS--CSTTT---------TCEECSSCCCCHHHHHH
T ss_pred CHHHHHHHHHHCCcCCCCEEEECCHHHHHHHHHHhcCC-CEEEEeCC--CCCCC---------CeEEecCCCCCHHHHHH
Confidence 56778999999999999999999999987776 78998 99999974 33343 68887 79999999
Q ss_pred HHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 112 VAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 112 a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
+++.++.. ...++||+|++ |+|+.+.+..|..
T Consensus 557 al~~a~~~-------------~~~vlVEefI~-G~Ei~v~Vlggkv 588 (757)
T 3ln7_A 557 ALEIAFRE-------------DKEVMVEDYLV-GTEYRFFVLGDET 588 (757)
T ss_dssp HHHHHHHH-------------CSSEEEEECCC-SEEEEEEEETTEE
T ss_pred HHHHHHhc-------------CCcEEEEEcCC-CcEEEEEEECCEE
Confidence 98876431 14699999998 7999999986543
No 59
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=98.75 E-value=2.1e-08 Score=97.46 Aligned_cols=94 Identities=17% Similarity=0.250 Sum_probs=76.4
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHHHHH--------HHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGE--------IAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTP 106 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~--------~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ 106 (443)
..++...|++|+++|||+|++..+++. ++.+ +.+++|| |+|+||.. ++.|+ ||.++.+.
T Consensus 94 ~~dK~~~~~~l~~~gi~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~-p~vvKP~~--g~~~~---------gv~~v~~~ 160 (306)
T 1iow_A 94 SMDKLRSKLLWQGAGLPVAPWVALTRA-EFEKGLSDKQLAEISALGL-PVIVKPSR--EGSSV---------GMSKVVAE 160 (306)
T ss_dssp HHCHHHHHHHHHHTTCCBCCEEEEEHH-HHHHCCCTHHHHHHHTTCS-SEEEEETT--CCTTT---------TCEEESSG
T ss_pred HcCHHHHHHHHHHCCCCCCCeEEEchh-hhhccchhhhhhHHhccCC-CEEEEeCC--CCCCC---------CEEEeCCH
Confidence 357888999999999999999999887 7766 6788998 99999963 33332 78889999
Q ss_pred HHHHHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEe
Q psy12143 107 EEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMME 155 (443)
Q Consensus 107 ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D 155 (443)
+++.+++++++.. ...++||+|++ |.|+.+.+..+
T Consensus 161 ~el~~~~~~~~~~-------------~~~~lvee~i~-g~e~~v~~~~g 195 (306)
T 1iow_A 161 NALQDALRLAFQH-------------DEEVLIEKWLS-GPEFTVAILGE 195 (306)
T ss_dssp GGHHHHHHHHTTT-------------CSEEEEEECCC-CCEEEEEEETT
T ss_pred HHHHHHHHHHHhh-------------CCCEEEEeCcC-CEEEEEEEECC
Confidence 9999888876421 25799999999 89999999843
No 60
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=98.73 E-value=1.3e-08 Score=101.65 Aligned_cols=94 Identities=17% Similarity=0.252 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGK 115 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~ 115 (443)
.++...|++|+++|||+|++..+++.+++.. +++|| |+|+||.. ++.++ ||.++.+++++.+++++
T Consensus 131 ~dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~--~~~~~-PvvvKP~~--~~~s~---------Gv~~v~~~~el~~a~~~ 196 (343)
T 1e4e_A 131 MDKSLTYIVAKNAGIATPAFWVINKDDRPVA--ATFTY-PVFVKPAR--SGSSF---------GVKKVNSADELDYAIES 196 (343)
T ss_dssp HSHHHHHHHHHHTTCBCCCEEEECTTCCCCG--GGSCS-CEEEEESS--CCTTT---------TCEEECSGGGHHHHHHH
T ss_pred hCHHHHHHHHHHCCCCcCCEEEEechhhhhh--hccCC-CEEEEeCC--CCCCC---------CEEEeCCHHHHHHHHHH
Confidence 5778899999999999999999987766432 67898 99999963 33333 78899999999998887
Q ss_pred HhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 116 MIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 116 l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
++.. ...++||+|++ |+|+.+.+..|..
T Consensus 197 ~~~~-------------~~~~lvEe~I~-G~E~~v~vl~~~~ 224 (343)
T 1e4e_A 197 ARQY-------------DSKILIEQAVS-GCEVGCAVLGNSA 224 (343)
T ss_dssp HTTT-------------CSSEEEEECCC-SEEEEEEEEEETT
T ss_pred HHhc-------------CCcEEEEeCcC-CeEEEEEEEeCCC
Confidence 6431 14699999999 8999999999863
No 61
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=98.71 E-value=6.1e-09 Score=99.74 Aligned_cols=99 Identities=15% Similarity=0.199 Sum_probs=71.9
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAG 114 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~ 114 (443)
..++...+++|+++|||+|++..+++.+++.++++++|| |+|+||.... .| .||.++.+.+++.++++
T Consensus 86 ~~dK~~~~~~l~~~gi~~p~~~~~~~~~~~~~~~~~~~~-p~vvKp~~g~--~~---------~gv~~v~~~~el~~~~~ 153 (280)
T 1uc8_A 86 CGDKWATSVALAKAGLPQPKTALATDREEALRLMEAFGY-PVVLKPVIGS--WG---------RLLAXXXXXXXXXXXXX 153 (280)
T ss_dssp HHBHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHCS-SEEEECSBCC--BC---------SHHHHHHHHHC------
T ss_pred hCCHHHHHHHHHHcCcCCCCeEeeCCHHHHHHHHHHhCC-CEEEEECCCC--Cc---------ccceecccccccchhhh
Confidence 457788999999999999999999999999999999998 9999996332 23 26777788888887776
Q ss_pred HH--hhchhhhhhcCCCCcccCeEEEEeeeCC-CeeeEEEEEEec
Q psy12143 115 KM--IGDYLITKQTGEKGRICNAVMVTERKYP-RKEYYFAFMMER 156 (443)
Q Consensus 115 ~l--~~~~~~~~~~~~~g~~~~~vlVE~~v~~-g~El~vgv~~D~ 156 (443)
++ +... ....++||+|+++ +.|+.+.+..+.
T Consensus 154 ~~~~~~~~-----------~~~~~lvqe~i~~~~~e~~v~v~~~~ 187 (280)
T 1uc8_A 154 XKEVLGGF-----------QHQLFYIQEYVEKPGRDIRVFVVGER 187 (280)
T ss_dssp ------CT-----------TTTCEEEEECCCCSSCCEEEEEETTE
T ss_pred hHhhhccc-----------CCCcEEEEeccCCCCceEEEEEECCE
Confidence 64 2110 0257999999997 789999887544
No 62
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=98.68 E-value=2.4e-08 Score=100.98 Aligned_cols=91 Identities=16% Similarity=0.159 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHH--HHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKK--EAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVA 113 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~--ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~ 113 (443)
.++...|++|+++|||+|++..+++.+ ++.+ ++++|| |+|+||. .++.+. ||.++.|.+|+.+++
T Consensus 148 ~DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~-~~~lg~-PvvVKP~--~g~ss~---------Gv~~v~~~~el~~a~ 214 (367)
T 2pvp_A 148 YNKYLTKLYAKDLGIKTLDYVLLNEKNRANALD-LMNFNF-PFIVKPS--NAGSSL---------GVNVVKEEKELIYAL 214 (367)
T ss_dssp HSHHHHHHHHHHHTCBCCCCEEECTTTGGGHHH-HCCSCS-CEEEEES--SCCTTT---------TCEEESSTTSHHHHH
T ss_pred cCHHHHHHHHHHCCcCCCCEEEEeCCchHHHHH-HhccCC-CEEEEEC--CCCCCC---------CEEEECCHHHHHHHH
Confidence 577889999999999999999998776 6666 778999 9999996 333333 788899999999988
Q ss_pred HHHhhchhhhhhcCCCCcccCeEEEEeeeCCCee---eEEEE
Q psy12143 114 GKMIGDYLITKQTGEKGRICNAVMVTERKYPRKE---YYFAF 152 (443)
Q Consensus 114 ~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~E---l~vgv 152 (443)
++++.. ...++||+|+++.+| +.+++
T Consensus 215 ~~~~~~-------------~~~vlVEe~I~G~~E~svi~v~v 243 (367)
T 2pvp_A 215 DSAFEY-------------SKEVLIEPFIQGVKEYNLAGCKI 243 (367)
T ss_dssp HHHTTT-------------CSCEEEEECCTTCEEEEEEEEEE
T ss_pred HHHHhc-------------CCcEEEEeCCCCCceeeEEEEEE
Confidence 876431 147999999994499 55555
No 63
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=98.68 E-value=2.1e-08 Score=99.37 Aligned_cols=93 Identities=15% Similarity=0.266 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGK 115 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~ 115 (443)
.++...|++|+++|||+|++..+++.++. +. ++|| |+|+||. .++.|+ ||.++.+++++.+++++
T Consensus 117 ~dK~~~k~~l~~~Gip~p~~~~~~~~~~~--~~-~~g~-PvvvKP~--~g~~s~---------Gv~~v~~~~el~~a~~~ 181 (322)
T 2fb9_A 117 MDKDLSKRVLAQAGVPVVPWVAVRKGEPP--VV-PFDP-PFFVKPA--NTGSSV---------GISRVERFQDLEAALAL 181 (322)
T ss_dssp HCHHHHHHHHHHTTCCCCCEEEEETTSCC--CC-CSCS-CEEEEET--TCCTTT---------TCEEESSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHCCCCCCCEEEEECchhh--hh-ccCC-CEEEEeC--CCCCCC---------CEEEECCHHHHHHHHHH
Confidence 57788999999999999999998776542 22 7898 9999996 333333 78899999999999887
Q ss_pred HhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEec
Q psy12143 116 MIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMER 156 (443)
Q Consensus 116 l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~ 156 (443)
++.. ...++||+|+++.+|+.+.+..|.
T Consensus 182 ~~~~-------------~~~vlvEe~I~G~~E~~v~vl~~~ 209 (322)
T 2fb9_A 182 AFRY-------------DEKAVVEKALSPVRELEVGVLGNV 209 (322)
T ss_dssp HTTT-------------CSEEEEEECCSSCEEEEEEEESSS
T ss_pred HHhc-------------CCeEEEEeCCCCCeeEEEEEEeCC
Confidence 6431 257999999994499999999875
No 64
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=98.57 E-value=1.3e-07 Score=93.21 Aligned_cols=96 Identities=19% Similarity=0.142 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHH--HHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIA--KKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEV 112 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a--~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a 112 (443)
.-+++..|++|+++|||+|++.. +.+++.++. +++|| |+|+||....+ | .||.++.|++|+.++
T Consensus 112 ~~dK~~~~~~l~~~gip~p~~~~--~~~~~~~~~~~~~~~~-P~vvKp~~g~g--~---------~gv~~v~~~~el~~~ 177 (331)
T 2pn1_A 112 CFDKYTMYEYCLRQGIAHARTYA--TMASFEEALAAGEVQL-PVFVKPRNGSA--S---------IEVRRVETVEEVEQL 177 (331)
T ss_dssp HHBHHHHHHHHHHHTCCCCCEES--SHHHHHHHHHTTSSCS-CEEEEESBC-----------------------------
T ss_pred hhCHHHHHHHHHHcCCCCCcEEe--cHHHhhhhhhcccCCC-CEEEEeCCCCC--C---------CCeEEeCCHHHHHHH
Confidence 35788899999999999999865 566776665 47898 99999964332 2 278888888888766
Q ss_pred HHHHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEE
Q psy12143 113 AGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVL 163 (443)
Q Consensus 113 ~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv 163 (443)
+++ ...++||+|++ |.|+++.+..|+.. |.++
T Consensus 178 ~~~-----------------~~~~lvee~i~-G~e~~v~~~~d~~~-G~~~ 209 (331)
T 2pn1_A 178 FSK-----------------NTDLIVQELLV-GQELGVDAYVDLIS-GKVT 209 (331)
T ss_dssp ----------------------CEEEEECCC-SEEEEEEEEECTTT-CCEE
T ss_pred HHh-----------------CCCeEEEecCC-CcEEEEEEEEecCC-CeEE
Confidence 432 13699999999 69999999998322 5443
No 65
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=98.50 E-value=7.6e-08 Score=96.46 Aligned_cols=81 Identities=14% Similarity=0.130 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAG 114 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~ 114 (443)
.-++...|++|+++|||+|++. .+|| |+|+||.. ++.|+ ||.++.|.+++...
T Consensus 101 ~~dK~~~k~~l~~~gip~~~~~-------------~ig~-P~vvKp~~--g~g~~---------gv~~v~~~~~~~~~-- 153 (363)
T 4ffl_A 101 SRDKKKSKDYFKSIGVPTPQDR-------------PSKP-PYFVKPPC--ESSSV---------GARIIYDDKDLEGL-- 153 (363)
T ss_dssp HTSHHHHHHHHHHTTCCCCCBS-------------CSSS-CEEEECSS--CCTTT---------TCEEEC------CC--
T ss_pred hhCHHHHHHHHHhcCCCCCCce-------------ecCC-CEEEEECC--CCCCc---------CeEEeccHHHhhhh--
Confidence 3578889999999999999875 3688 99999963 33232 78888887664210
Q ss_pred HHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEeccCCCcEE
Q psy12143 115 KMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVL 163 (443)
Q Consensus 115 ~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~~~gpvv 163 (443)
...+++|+|+. |.|+++.+..|.. +.++
T Consensus 154 ------------------~~~~~~ee~i~-g~e~sv~~~~d~~--~~~~ 181 (363)
T 4ffl_A 154 ------------------EPDTLVEEYVE-GEVVSLEVVGDGS--HFAV 181 (363)
T ss_dssp ------------------CTTCEEEECCC-SEEEEEEEEEESS--CEEE
T ss_pred ------------------ccchhhhhhcc-CcEEEEEEEEECC--eEEE
Confidence 24589999998 8999999999974 4444
No 66
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=98.31 E-value=8.9e-07 Score=89.28 Aligned_cols=92 Identities=15% Similarity=0.221 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGK 115 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~ 115 (443)
-+....|++|+++|||+|++ +++.+|+ +| |+|+||....+ || ||.++.|.+|+.+++++
T Consensus 123 ~~k~~~k~~l~~~GIptp~~--~~~~~e~-------~~-PvVVK~~~~a~--Gk---------Gv~v~~s~ee~~~a~~~ 181 (361)
T 2r7k_A 123 SERSLEGKLLREAGLRVPKK--YESPEDI-------DG-TVIVKFPGARG--GR---------GYFIASSTEEFYKKAED 181 (361)
T ss_dssp TCHHHHHHHHHHTTCCCCCE--ESSGGGC-------CS-CEEEECSCCCC--------------EEEESSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCcCCCCE--eCCHHHc-------CC-CEEEeeCCCCC--CC---------CEEEECCHHHHHHHHHH
Confidence 44566889999999999975 6666654 67 99999975544 33 79999999999999998
Q ss_pred HhhchhhhhhcCCCCcc-cCeEEEEeeeCCCeeeEEEEEEec
Q psy12143 116 MIGDYLITKQTGEKGRI-CNAVMVTERKYPRKEYYFAFMMER 156 (443)
Q Consensus 116 l~~~~~~~~~~~~~g~~-~~~vlVE~~v~~g~El~vgv~~D~ 156 (443)
++.... .+.. ...++||+|++ |.|.++.....+
T Consensus 182 ~~~~~~-------~~~~~~~~viIEEfl~-G~e~s~~~f~~~ 215 (361)
T 2r7k_A 182 LKKRGI-------LTDEDIANAHIEEYVV-GTNFCIHYFYSP 215 (361)
T ss_dssp HHHTTS-------CCHHHHHHCEEEECCC-SEEEEEEEEEET
T ss_pred HHhccc-------cccCCCCeEEEEeccc-eEEeeEEEEecc
Confidence 865320 1111 13599999999 788763333333
No 67
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=98.24 E-value=3.4e-06 Score=82.81 Aligned_cols=93 Identities=19% Similarity=0.278 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAG 114 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~ 114 (443)
..++...|++|+++|||+|++ +++.+ +++| |+|+||.... .|+ ||.++.+.+++.++++
T Consensus 98 ~~dK~~~~~~l~~~gip~p~~--~~~~~-------~l~~-P~vvKP~~g~--~s~---------Gv~~v~~~~el~~~~~ 156 (334)
T 2r85_A 98 ESDRNLERKWLKKAGIRVPEV--YEDPD-------DIEK-PVIVKPHGAK--GGK---------GYFLAKDPEDFWRKAE 156 (334)
T ss_dssp HHSHHHHHHHHHHTTCCCCCB--CSCGG-------GCCS-CEEEEECC------T---------TCEEESSHHHHHHHHH
T ss_pred HHhHHHHHHHHHHcCCCCCCc--cCChH-------HcCC-CEEEEeCCCC--CCC---------CEEEECCHHHHHHHHH
Confidence 356778899999999999998 56654 3678 9999997333 333 7889999999999888
Q ss_pred HHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 115 KMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 115 ~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
+++.... .+ ....++||+|++ |.|+.+.+..+..
T Consensus 157 ~~~~~~~-------~~-~~~~~lvee~i~-G~e~~~~~~~~~~ 190 (334)
T 2r85_A 157 KFLGIKR-------KE-DLKNIQIQEYVL-GVPVYPHYFYSKV 190 (334)
T ss_dssp HHHCCCS-------GG-GCCSEEEEECCC-CEEEEEEEEEETT
T ss_pred HHHhhcc-------cC-CCCcEEEEeccC-CceeEEEEeecCc
Confidence 7754200 00 014699999999 7888876666643
No 68
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=98.09 E-value=2.4e-05 Score=77.89 Aligned_cols=122 Identities=20% Similarity=0.229 Sum_probs=89.5
Q ss_pred cCCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCC--CCHHHHHHHHHHHHcCCCccEEEEEcc-CCCCChHHHHHH
Q psy12143 294 LDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGG--ATAAQVKEAFKIITADPKVCAIMVNIF-GGIMRCDVIAEG 370 (443)
Q Consensus 294 ~~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~--~~~~~~~~al~~ll~dp~vd~vlv~i~-~~~~~~~~~a~~ 370 (443)
..|+||++|-||+++....|.+...|.-..-.+-++++ ++. .+.+.|+.+.+||++++|+++.- ++.. + +.
T Consensus 167 ~~G~vgivSqSG~l~~~i~~~~~~~g~G~S~~VsiGn~~~~d~-~~~D~l~~~~~Dp~T~~I~l~gEi~g~~---e--~~ 240 (334)
T 3mwd_B 167 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGS-TFMDHVLRYQDTPGVKMIVVLGEIGGTE---E--YK 240 (334)
T ss_dssp SCCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSS-CHHHHHHHHHTCTTCCEEEEEEESSSSH---H--HH
T ss_pred CCCCEEEEeCchHHHHHHHHHHHhcCCCeEEEEECCCCccCCC-CHHHHHHHHhcCCCCCEEEEEEecCChH---H--HH
Confidence 36899999999999999999999999766777888887 442 38999999999999999998622 2222 2 33
Q ss_pred HHHHHHHcCCCCcEEEEeCCCCHH-----------------------HHHHHHHHCCCCcccCCCHHHHHHHHHHH
Q psy12143 371 IIAAAQELSLKIPIICRLQGTNVD-----------------------DAKVLIASAAMKILPCDNLDEAARLAVKL 423 (443)
Q Consensus 371 i~~~~~~~~~~kpiv~~~~g~~~~-----------------------~~~~~L~~~GiP~~~f~s~e~Av~al~~l 423 (443)
..+++++...+||||++..|.... .-...|+++|+.. .+++++-...+..+
T Consensus 241 ~~~~~r~~~~~KPVV~~kaGrs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~~aGv~~--v~~~~el~~~~~~~ 314 (334)
T 3mwd_B 241 ICRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFV--PRSFDELGEIIQSV 314 (334)
T ss_dssp HHHHHHTTSCCSCEEEEEECTTCC----------------CGGGSHHHHHHHHHHTTCBC--CSSGGGHHHHHHHH
T ss_pred HHHHHHhhcCCCCEEEEEcCCCcccccccccccchhhhccCCCccHHHHHHHHHHcCCeE--cCCHHHHHHHHHHH
Confidence 445555433579999875443211 2245899999988 78888777766554
No 69
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=98.08 E-value=9.2e-06 Score=79.65 Aligned_cols=93 Identities=15% Similarity=0.114 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHc--CCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKL--NIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEV 112 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~l--g~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a 112 (443)
..++...+++|+++|||+|++..+++.+++.++.++. +| |+|+||....+|.+- -||.++.+.+++.+
T Consensus 96 ~~dK~~~~~~l~~~gi~~P~~~~~~~~~~~~~~~~~~~~~~-P~vvKP~~g~g~~~s--------~gv~~v~~~~~l~~- 165 (324)
T 1z2n_X 96 MSSREEINALLIKNNIPIPNSFSVKSKEEVIQLLQSKQLIL-PFIVKPENAQGTFNA--------HQMKIVLEQEGIDD- 165 (324)
T ss_dssp HTBHHHHHHHHHHTTCCCSCEEEESSHHHHHHHHHTTCSCS-SEEEEESBCSSSSGG--------GEEEEECSGGGGTT-
T ss_pred HhCHHHHHHHHHHCCCCCCCEEEeCCHHHHHHHHHHcCCCC-CEEEeeCCCCCCccc--------eeeEEEeCHHHHhh-
Confidence 3567789999999999999999999999998888774 48 999999743232111 27888887765321
Q ss_pred HHHHhhchhhhhhcCCCCcccCeEEEEeeeCC-CeeeEEEEEEec
Q psy12143 113 AGKMIGDYLITKQTGEKGRICNAVMVTERKYP-RKEYYFAFMMER 156 (443)
Q Consensus 113 ~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~-g~El~vgv~~D~ 156 (443)
. ...+++|+|+++ +.|+.+.+..+.
T Consensus 166 -------~------------~~~~lvqe~i~~~g~~~~v~v~g~~ 191 (324)
T 1z2n_X 166 -------I------------HFPCLCQHYINHNNKIVKVFCIGNT 191 (324)
T ss_dssp -------C------------CSSEEEEECCCCTTCEEEEEEETTE
T ss_pred -------c------------CCCEEEEEccCCCCcEEEEEEECCE
Confidence 0 146999999985 789888876543
No 70
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=97.92 E-value=2.8e-05 Score=80.99 Aligned_cols=120 Identities=22% Similarity=0.262 Sum_probs=92.3
Q ss_pred CCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCC-----CCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHH
Q psy12143 295 DGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGG-----ATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAE 369 (443)
Q Consensus 295 ~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~-----~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~ 369 (443)
.|+||+||-||+++....|.+...|.-....+-++++ ...-.+.+.++.+.+||++++|++++-+. .+.+++
T Consensus 112 ~G~vaivSqSGal~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~~---~e~~~~ 188 (480)
T 3dmy_A 112 EGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPP---AEAVRL 188 (480)
T ss_dssp EEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESCC---CHHHHH
T ss_pred CCCEEEEeccHHHHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEecC---CcHHHH
Confidence 6889999999999999999999999665666666666 34456999999999999999999866442 244555
Q ss_pred HHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHHH
Q psy12143 370 GIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 370 ~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~ 425 (443)
.+++++++ .+||||++..|.... + +++.|+.. .+++++.......|+.
T Consensus 189 ~f~~~ar~--~~KPVV~~k~Grs~~-g---~r~~Gvir--v~~~~el~~~a~~l~~ 236 (480)
T 3dmy_A 189 KIVNAMKA--TGKPTVALFLGYTPA-V---ARDENVWF--ASSLDEAARLACLLSR 236 (480)
T ss_dssp HHHHHHHH--HCSCEEEEETTCCCS-S---SEETTEEE--ESSHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCCEEEEEeCCCCc-c---cccCCEEE--ECCHHHHHHHHHHHhc
Confidence 66666555 479999987766322 2 77889876 7899998887776665
No 71
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=97.91 E-value=0.00014 Score=71.00 Aligned_cols=122 Identities=18% Similarity=0.293 Sum_probs=89.3
Q ss_pred CCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCH-HHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHH
Q psy12143 295 DGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATA-AQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIA 373 (443)
Q Consensus 295 ~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~-~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~ 373 (443)
.|+||++|-||+++....|.+...|.-....+-+++++.. -.+.+.++.+.+||++++|+++.-.. .+.+..+....+
T Consensus 144 ~G~va~vsqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~t~~I~l~~E~~-~~~~~~~~~~~~ 222 (288)
T 1oi7_A 144 RGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIG-GSDEEEAAAWVK 222 (288)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEECSS-SSHHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeC-CCHHHHHHHHHH
Confidence 5889999999999999999999999766778888888753 24899999999999999999865543 223333333333
Q ss_pred HHHHcCCCCcEEEEeCCCCH--------------------HHHHHHHHHCCCCcccCCCHHHHHHHHHHH
Q psy12143 374 AAQELSLKIPIICRLQGTNV--------------------DDAKVLIASAAMKILPCDNLDEAARLAVKL 423 (443)
Q Consensus 374 ~~~~~~~~kpiv~~~~g~~~--------------------~~~~~~L~~~GiP~~~f~s~e~Av~al~~l 423 (443)
+ . .+||||++..|... ..-...|++.|+.. .+++++-...+.++
T Consensus 223 ~--~--~~KPVv~~k~G~~~~~~~~~~Htgal~~~~~g~~~~~~aa~~~aGv~~--~~~~~el~~~~~~~ 286 (288)
T 1oi7_A 223 D--H--MKKPVVGFIGGRSAPKGKRMGHAGAIIMGNVGTPESKLRAFAEAGIPV--ADTIDEIVELVKKA 286 (288)
T ss_dssp H--H--CCSCEEEEESCC------------------CCSHHHHHHHHHHHTCCB--CSSHHHHHHHHHHH
T ss_pred h--c--CCCCEEEEEecCCCCccccCcchhhcccCCCCCHHHHHHHHHHCCCeE--eCCHHHHHHHHHHH
Confidence 2 2 47999987655322 11245889999988 88988776665543
No 72
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=97.86 E-value=3.4e-05 Score=75.93 Aligned_cols=127 Identities=14% Similarity=0.172 Sum_probs=90.6
Q ss_pred CCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCC-HHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHH
Q psy12143 295 DGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGAT-AAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIA 373 (443)
Q Consensus 295 ~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~-~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~ 373 (443)
.|+||++|-||+++....|.+...|.-....+-+++++. .-.+.++++.+.+||++++|+++.-... +.+..+...++
T Consensus 152 ~G~va~vSqSG~l~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~g-~~e~~~~~f~~ 230 (305)
T 2fp4_A 152 KGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGG-NAEENAAEFLK 230 (305)
T ss_dssp EEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESSS-SHHHHHHHHHH
T ss_pred CCCEEEEecchHHHHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecCC-chhhHHHHHHH
Confidence 588999999999999999999999976677888888874 2348999999999999999998654432 22334445555
Q ss_pred HHHHcCCCCcEEEEeCCCC--------------------HHHHHHHHHHCCCCcccCCCHHHHHHHHHHHH
Q psy12143 374 AAQELSLKIPIICRLQGTN--------------------VDDAKVLIASAAMKILPCDNLDEAARLAVKLS 424 (443)
Q Consensus 374 ~~~~~~~~kpiv~~~~g~~--------------------~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~ 424 (443)
+.++...+||||++..|.. .......|++.|+.. .+++++-...+..+.
T Consensus 231 ~~~~~~~~KPVv~~k~G~s~~~g~~~~Htgal~~~~~g~~~~~~aa~~~aGv~~--v~~~~el~~~~~~~~ 299 (305)
T 2fp4_A 231 QHNSGPKSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVV--SMSPAQLGTTIYKEF 299 (305)
T ss_dssp HHSCSTTCCCEEEEEECTTCCTTCCCSSTTCCCBTTBCCHHHHHHHHHHTTCEE--CSSTTCHHHHHHHHH
T ss_pred HHHHhcCCCCEEEEEecCCccccccccchhhhhccCCccHHHHHHHHHHCCCeE--eCCHHHHHHHHHHHH
Confidence 4443334799998654321 222256899999987 677766555554443
No 73
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=97.73 E-value=0.00014 Score=71.16 Aligned_cols=122 Identities=17% Similarity=0.271 Sum_probs=87.2
Q ss_pred CCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCH-HHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHH
Q psy12143 295 DGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATA-AQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIA 373 (443)
Q Consensus 295 ~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~-~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~ 373 (443)
.|+||++|-||+++....|.+...|.-..-.+-+++++.. -.+.+.++.+.+||++++|+++.-.. .+.+..+....+
T Consensus 151 ~G~va~vSqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~~-~~~~~~~~~~~~ 229 (297)
T 2yv2_A 151 EGGVAVVSRSGTLTYEISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLIGEIG-GDMEERAAEMIK 229 (297)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEECSS-SSHHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCeeEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeC-CCHHHHHHHHHH
Confidence 5889999999999999999999999766778888888753 24899999999999999999865533 223333333333
Q ss_pred HHHHcCCCCcEEEEeCCCCH-------------------HH-HHHHHHHCCCCcccCCCHHHHHHHHHH
Q psy12143 374 AAQELSLKIPIICRLQGTNV-------------------DD-AKVLIASAAMKILPCDNLDEAARLAVK 422 (443)
Q Consensus 374 ~~~~~~~~kpiv~~~~g~~~-------------------~~-~~~~L~~~GiP~~~f~s~e~Av~al~~ 422 (443)
....+||||++..|... .+ ....|++.|+.. .+++++-...+.+
T Consensus 230 ---~~~~~KPVv~~k~G~s~~~~~~~sHtgal~~~~~g~~~~~~aa~~~aGv~~--v~~~~el~~~~~~ 293 (297)
T 2yv2_A 230 ---KGEFTKPVIAYIAGRTAPPEKRMGHAGAIIMMGTGTYEGKVKALREAGVEV--AETPFEVPELVRK 293 (297)
T ss_dssp ---TTSCCSCEEEEESCCC------------------CSHHHHHHHHHTTTCEE--ESSGGGHHHHHHH
T ss_pred ---hccCCCCEEEEEeCCCCccccccCCccccccCCCCCHHHHHHHHHHcCCeE--eCCHHHHHHHHHH
Confidence 22357999987655422 11 245888889877 6777765555443
No 74
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=97.66 E-value=0.00017 Score=70.45 Aligned_cols=121 Identities=19% Similarity=0.279 Sum_probs=86.4
Q ss_pred CCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCH-HHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHH
Q psy12143 295 DGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATA-AQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIA 373 (443)
Q Consensus 295 ~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~-~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~ 373 (443)
.|+||++|-||+++....|.+...|.-....+-+++++.. -.+.+.++.+.+||++++|+++.-... +.+..+ .+
T Consensus 150 ~G~va~vSqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~~g-~~~~~~---~~ 225 (294)
T 2yv1_A 150 EGSVGMVSRSGTLTYEIAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGEIGG-GAEEEA---AK 225 (294)
T ss_dssp EEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEESSS-SHHHHH---HH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCCeEEEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEeeCC-CHHHHH---HH
Confidence 5889999999999999999999999767778888888753 248999999999999999998655432 222222 23
Q ss_pred HHHHcCCCCcEEEEeCCCCH--------------------HHHHHHHHHCCCCcccCCCHHHHHHHHHHH
Q psy12143 374 AAQELSLKIPIICRLQGTNV--------------------DDAKVLIASAAMKILPCDNLDEAARLAVKL 423 (443)
Q Consensus 374 ~~~~~~~~kpiv~~~~g~~~--------------------~~~~~~L~~~GiP~~~f~s~e~Av~al~~l 423 (443)
.+++ .+||||++..|... ......|++.|+.. .+++++-...+..+
T Consensus 226 ~~~~--~~KPVv~~k~G~~~~~g~~~sHtgal~~~~~g~~~~~~aa~~~aGv~~--~~~~~el~~~~~~~ 291 (294)
T 2yv1_A 226 FIEK--MKKPVIGYIAGQSAPEGKRMGHAGAIVEKGKGTAESKMKALEEAGAYV--AKNISDIPKLLAGI 291 (294)
T ss_dssp HHTT--CSSCEEEEEECC-------------------CCHHHHHHHHHHHTCEE--CSSTTHHHHHHHHH
T ss_pred HHHh--CCCCEEEEEecCCCCccccCCchhhhccCCCCCHHHHHHHHHHCCCeE--eCCHHHHHHHHHHH
Confidence 3333 47999986544322 11245888889877 77777666555443
No 75
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=97.64 E-value=7.2e-05 Score=73.67 Aligned_cols=91 Identities=11% Similarity=0.043 Sum_probs=66.3
Q ss_pred HHHHHHHHHCCC---CCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHH
Q psy12143 39 HVSYTLLKEGGI---PVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGK 115 (443)
Q Consensus 39 ~~ak~lL~~~GI---pv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~ 115 (443)
.....+|++.|+ |.++.....+..+ +.+.+|| |+|+|+. .|+.|+ ||.++.|++++++..+.
T Consensus 119 ~~~~~~l~~~gi~~~P~~~~~~~~~~~~---~~~~~g~-PvVvK~~--~Gs~G~---------GV~lv~~~~~~~~~~~~ 183 (309)
T 1i7n_A 119 AQMVAIFKTLGGEKFPLIEQTYYPNHRE---MLTLPTF-PVVVKIG--HAHSGM---------GKVKVENHYDFQDIASV 183 (309)
T ss_dssp HHHHHHHHHHCTTTSCBCCCEEESSGGG---GSSCCCS-SEEEEES--SCSTTT---------TEEEECSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCCEEeeCChhh---hhhccCC-CEEEEeC--CCCcee---------CeEEECCHHHHHHHHHH
Confidence 446677888998 8666555555443 3456898 9999995 444444 79999999998877765
Q ss_pred HhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 116 MIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 116 l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
+... ..-+++|||++.++.+.+.+..+..
T Consensus 184 ~~~~-------------~~~~~vQefI~~g~DiRv~VvGg~v 212 (309)
T 1i7n_A 184 VALT-------------QTYATAEPFIDAKYDIRVQKIGNNY 212 (309)
T ss_dssp HHHH-------------TCCEEEEECCCEEEEEEEEEETTEE
T ss_pred Hhcc-------------CCeEEEEeecCCCceEEEEEECCEE
Confidence 4321 1358999999988999999886653
No 76
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=97.61 E-value=0.00034 Score=68.11 Aligned_cols=121 Identities=16% Similarity=0.250 Sum_probs=87.9
Q ss_pred CCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCH-HHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHH
Q psy12143 295 DGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATA-AQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIA 373 (443)
Q Consensus 295 ~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~-~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~ 373 (443)
.|+||++|-||+++....|.+...|.-....+-++++++. -.+.+.++.+.+||++++|+++.-.. .+.+..+....+
T Consensus 144 ~G~i~~vsqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~l~~D~~t~~I~l~~E~~-~~~~~~~~~~~~ 222 (288)
T 2nu8_A 144 PGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIG-GSAEEEAAAYIK 222 (288)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESS-SSHHHHHHHHHH
T ss_pred CCCEEEEECcHHHHHHHHHHHHhcCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeC-CCHHHHHHHHHH
Confidence 5889999999999999999999998766677777777742 34899999999999999999865433 233444444444
Q ss_pred HHHHcCCCCcEEEEeCCCC--------------------HHHHHHHHHHCCCCcccCCCHHHHHHHHHH
Q psy12143 374 AAQELSLKIPIICRLQGTN--------------------VDDAKVLIASAAMKILPCDNLDEAARLAVK 422 (443)
Q Consensus 374 ~~~~~~~~kpiv~~~~g~~--------------------~~~~~~~L~~~GiP~~~f~s~e~Av~al~~ 422 (443)
+ . .+||||++..|.. .......|++.|+.. .+++++-...+.+
T Consensus 223 ~--~--~~KPVv~~k~G~~~~~g~~~~Htga~~~~~~g~~~~~~aa~~~aGv~~--~~~~~el~~~~~~ 285 (288)
T 2nu8_A 223 E--H--VTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKT--VRSLADIGEALKT 285 (288)
T ss_dssp H--H--CCSCEEEEEECTTCCTTCCCSSTTCCCCTTCCCHHHHHHHHHHTTCEE--CSSGGGHHHHHHH
T ss_pred h--c--CCCCEEEEEeCCCCcccccccchhhhhccCCccHHHHHHHHHHCCCeE--eCCHHHHHHHHHH
Confidence 4 2 5799998643321 122345899999987 7888776655443
No 77
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=97.55 E-value=6e-05 Score=72.85 Aligned_cols=89 Identities=16% Similarity=0.111 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeC-CHHHHHHHHHH
Q psy12143 37 HEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVD-TPEEAEEVAGK 115 (443)
Q Consensus 37 ~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~-s~ee~~~a~~~ 115 (443)
++...+++|+ |+|++..+++.+++.++.+++| |+|+||.. ++.|+ ||.++. +.+++.++++.
T Consensus 124 dK~~~~~~l~----~~P~t~~~~~~~~~~~~~~~~~--p~vvKP~~--g~~g~---------Gv~~v~~~~~~l~~~~~~ 186 (316)
T 1gsa_A 124 EKLFTAWFSD----LTPETLVTRNKAQLKAFWEKHS--DIILKPLD--GMGGA---------SIFRVKEGDPNLGVIAET 186 (316)
T ss_dssp TTGGGGGGTT----TSCCEEEESCHHHHHHHHHHHS--SEEEECSS--CCTTT---------TCEEECTTCTTHHHHHHH
T ss_pred hHHHHHhhhh----cCCCeEEeCCHHHHHHHHHHcC--CEEEEECC--CCCcc---------cEEEecCChHHHHHHHHH
Confidence 3444555665 9999999999999998888887 89999963 33343 677876 88888777665
Q ss_pred HhhchhhhhhcCCCCcccCeEEEEeeeCC--CeeeEEEEEE
Q psy12143 116 MIGDYLITKQTGEKGRICNAVMVTERKYP--RKEYYFAFMM 154 (443)
Q Consensus 116 l~~~~~~~~~~~~~g~~~~~vlVE~~v~~--g~El~vgv~~ 154 (443)
+... + ...++||+|+++ +.|+.+.+..
T Consensus 187 ~~~~----------~--~~~~lvqe~i~~~~~~~~~v~~~~ 215 (316)
T 1gsa_A 187 LTEH----------G--TRYCMAQNYLPAIKDGDKRVLVVD 215 (316)
T ss_dssp HTTT----------T--TSCEEEEECCGGGGGCEEEEEEET
T ss_pred HHhc----------C--CceEEEecccCCCCCCCEEEEEEC
Confidence 4221 1 146999999996 6788877753
No 78
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=97.46 E-value=0.00012 Score=72.99 Aligned_cols=91 Identities=9% Similarity=0.043 Sum_probs=65.6
Q ss_pred HHHHHHHHHCCC---CCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHH
Q psy12143 39 HVSYTLLKEGGI---PVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGK 115 (443)
Q Consensus 39 ~~ak~lL~~~GI---pv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~ 115 (443)
.....+|.+.|+ |+++.....+..+ +.+.+|| |+|+|+. .|+.|+ ||.++.|.+++++..+.
T Consensus 136 ~~~l~~l~~~gi~~~P~~~~t~~~~~~~---~~~~~g~-PvVvK~~--~Gs~G~---------GV~lve~~~~~~~~~~~ 200 (344)
T 2p0a_A 136 SQLIKIFHSLGPEKFPLVEQTFFPNHKP---MVTAPHF-PVVVKLG--HAHAGM---------GKIKVENQLDFQDITSV 200 (344)
T ss_dssp HHHHHHHHHHCTTTSCBCCCEEESSSTT---CCCCSSS-SEEEEES--SCCTTT---------TEEEECSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCEEecCchhh---hhhccCC-CEEEEeC--CCCcee---------CeEEECCHHHHHHHHHH
Confidence 456677888898 8666555554433 3456898 9999995 444444 79999999998877654
Q ss_pred HhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 116 MIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 116 l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
+... ..-+++|||++.++.+.+.+..+..
T Consensus 201 ~~~~-------------~~~~~vQefI~~g~DiRv~VVGg~v 229 (344)
T 2p0a_A 201 VAMA-------------KTYATTEAFIDSKYDIRIQKIGSNY 229 (344)
T ss_dssp HHHH-------------TCCEEEEECCCEEEEEEEEEETTEE
T ss_pred Hhcc-------------CCeEEEEeccCCCccEEEEEECCEE
Confidence 4321 1358899999988999999886653
No 79
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=97.39 E-value=0.00068 Score=74.74 Aligned_cols=124 Identities=19% Similarity=0.188 Sum_probs=88.8
Q ss_pred cCCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCH-HHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHH
Q psy12143 294 LDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATA-AQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGII 372 (443)
Q Consensus 294 ~~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~-~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~ 372 (443)
..|+||++|-||+++....|.+...|.-..-.+-+++++.. -.+.++++.+.+||++++|+++.-.+.......|+
T Consensus 653 ~~G~VgiVSqSGal~~~i~~~~~~~g~G~S~~VsiGnd~~~d~~~~D~L~~l~~Dp~T~~Ivly~Ei~g~~f~~aA~--- 729 (829)
T 3pff_A 653 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICR--- 729 (829)
T ss_dssp SCCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHHHHHHH---
T ss_pred CCCcEEEEechhHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCCHHHHHHHHhhCCCCCEEEEEEecCchHHHHHHH---
Confidence 36899999999999999999999999666677778887432 24899999999999999999865422222222233
Q ss_pred HHHHHcCCCCcEEEEeCCCCHH-----------------------HHHHHHHHCCCCcccCCCHHHHHHHHHHH
Q psy12143 373 AAAQELSLKIPIICRLQGTNVD-----------------------DAKVLIASAAMKILPCDNLDEAARLAVKL 423 (443)
Q Consensus 373 ~~~~~~~~~kpiv~~~~g~~~~-----------------------~~~~~L~~~GiP~~~f~s~e~Av~al~~l 423 (443)
.+++...+||||++..|.... .-...|+++|+.. .+++++-...+.++
T Consensus 730 -~~~~~~~~KPVVa~kaGrsa~~~~~~~~~sHtGAlag~~~~ta~~~~aa~r~aGvi~--v~~~~el~~~~~~~ 800 (829)
T 3pff_A 730 -GIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFV--PRSFDELGEIIQSV 800 (829)
T ss_dssp -HHHTTSCCSCEEEEEECSSTTC---------------CGGGSHHHHHHHHHHTTCBC--CSSGGGHHHHHHHH
T ss_pred -HHHhccCCCCEEEEEecCcCcccccccccccccccccCCcccHHHHHHHHHHcCCeE--cCCHHHHHHHHHHH
Confidence 333212579999865443211 2245899999988 88888877776654
No 80
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=97.37 E-value=0.00021 Score=72.96 Aligned_cols=91 Identities=14% Similarity=0.082 Sum_probs=65.5
Q ss_pred HHHHHHHHHCCC---CCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHH
Q psy12143 39 HVSYTLLKEGGI---PVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGK 115 (443)
Q Consensus 39 ~~ak~lL~~~GI---pv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~ 115 (443)
.....+|.+.|+ |.++.....+..+ +.+.+|| |+|+|+. .|+.|+ ||.++.|.++++...+.
T Consensus 231 ~~~l~ll~~~gi~~iP~t~~t~~~~~~~---~i~~~g~-PvVvKp~--~GS~G~---------GV~lve~~~~l~~ii~~ 295 (422)
T 1pk8_A 231 AQMVRLHKKLGTEEFPLIDQTFYPNHKE---MLSSTTY-PVVVKMG--HAHSGM---------GKVKVDNQHDFQDIASV 295 (422)
T ss_dssp HHHHHHHHHHCTTTSCBCCCEEESSGGG---CCCCSSS-SEEEEES--SCCTTT---------TEEEECSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCCceEecCchhh---hhhccCC-CEEEEeC--CCCcee---------CeEEeCCHHHHHHHHHH
Confidence 345677888888 8555555554433 3456898 9999995 454554 79999999999877765
Q ss_pred HhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 116 MIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 116 l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
+... ..-+++|||++.++.+.+.+..+..
T Consensus 296 ~~~~-------------~~~~~vQEfI~~g~DIRv~VVGg~v 324 (422)
T 1pk8_A 296 VALT-------------KTYATAEPFIDAKYDVRVQKIGQNY 324 (422)
T ss_dssp HHHH-------------TSCEEEEECCCEEEEEEEEEETTEE
T ss_pred Hhcc-------------CceEEEEeecCCCceEEEEEECCEE
Confidence 4321 1358999999988999999886653
No 81
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=97.35 E-value=0.00013 Score=73.00 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHC-------CCCCCCeeecCCH--HHHHHHHH--HcCCCeEEEEEeecCCCCCccccccCccCcEEEeC
Q psy12143 36 VHEHVSYTLLKEG-------GIPVPPFGVAKTK--KEAGEIAK--KLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVD 104 (443)
Q Consensus 36 L~e~~ak~lL~~~-------GIpv~~~~~v~s~--~ea~~~a~--~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~ 104 (443)
.+....-++|.+. |||+|++.++.+. +++.+..+ .+|| |+|+||....|+. + -|+.++.
T Consensus 115 ~dk~~~~~~L~k~~~~~~~~gIp~P~t~~~~~~~~~~~~~~~~~~~lg~-P~VvKP~~g~Gs~--s-------~~v~~v~ 184 (346)
T 2q7d_A 115 LDRSKSYELIRKIEAYMEDDRICSPPFMELTSLCGDDTMRLLEKNGLTF-PFICKTRVAHGTN--S-------HEMAIVF 184 (346)
T ss_dssp TBHHHHHHHHHHHHHHHCBTTEECCCEEEECSCCCTTHHHHHHHTTCCS-SEEEECSBCSSTT--C-------CEEEEEC
T ss_pred hhHHHHHHHHHhhcccccCCCCCCCCEEEEeCCCHHHHHHHHHhcCCCC-CEEEEecCCCcce--e-------eeeEEec
Confidence 4666677778876 9999999998763 45555443 5788 9999996333222 2 2788888
Q ss_pred CHHHHHHHHHHHhhchhhhhhcCCCCcccCeEEEEeeeC-CCeeeEEEEEEecc
Q psy12143 105 TPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKY-PRKEYYFAFMMERS 157 (443)
Q Consensus 105 s~ee~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~-~g~El~vgv~~D~~ 157 (443)
+.+++.. + -..++||+|++ +|.|+.+.+..|..
T Consensus 185 ~~~~l~~----~----------------~~~~lvQefI~~~G~dirv~VvG~~v 218 (346)
T 2q7d_A 185 NQEGLNA----I----------------QPPCVVQNFINHNAVLYKVFVVGESY 218 (346)
T ss_dssp SGGGTTC----------------------CCEEEEECCCCTTEEEEEEEETTEE
T ss_pred CHHHHHh----c----------------CCCEEEEEeeCCCCeEEEEEEECCEE
Confidence 8776542 1 13599999997 58999999986653
No 82
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=97.28 E-value=0.0002 Score=70.17 Aligned_cols=71 Identities=14% Similarity=0.248 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHH
Q psy12143 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAG 114 (443)
Q Consensus 35 ~L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~ 114 (443)
.-++...|++|++ |||+|++.+ +++|| |+|+||.. ++.|+ ||.++.+
T Consensus 108 ~~dK~~~~~~l~~-Gip~p~~~~-----------~~~~~-P~vvKP~~--g~gs~---------Gv~~v~~--------- 154 (305)
T 3df7_A 108 TSDKWELYKKLRG-EVQVPQTSL-----------RPLDC-KFIIKPRT--ACAGE---------GIGFSDE--------- 154 (305)
T ss_dssp HTSHHHHHHHHTT-TSCCCCEES-----------SCCSS-SEEEEESS--CC-------------CBCCSS---------
T ss_pred hcCHHHHHHHHHh-CCCCCCEec-----------ccCCC-CEEEEeCC--CCCCC---------CEEEEec---------
Confidence 4678889999999 999999886 25788 99999963 33332 5666655
Q ss_pred HHhhchhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEec
Q psy12143 115 KMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMER 156 (443)
Q Consensus 115 ~l~~~~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~ 156 (443)
. ...++||+|++ |.|+.+.+..+.
T Consensus 155 ----~-------------~~~~lvEe~I~-G~e~sv~v~~g~ 178 (305)
T 3df7_A 155 ----V-------------PDGHIAQEFIE-GINLSVSLAVGE 178 (305)
T ss_dssp ----C-------------CTTEEEEECCC-SEEEEEEEEESS
T ss_pred ----C-------------CCCEEEEeccC-CcEEEEEEEeCC
Confidence 1 14599999999 899999999753
No 83
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=97.17 E-value=0.0028 Score=65.68 Aligned_cols=114 Identities=17% Similarity=0.186 Sum_probs=80.8
Q ss_pred CcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHH
Q psy12143 296 GSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAA 375 (443)
Q Consensus 296 g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~ 375 (443)
|+||+||-||+++....|.+...|.-....+-++++++. .+.++++.+.+||++++|+++.-+ +.+.....+....+
T Consensus 150 G~v~~vsqSG~~~~~~~~~~~~~g~G~s~~vs~G~~~~~-~~~d~l~~~~~D~~t~~I~l~~E~-i~~~~~f~~~a~~~- 226 (457)
T 2csu_A 150 GNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMADV-DFAELMEYLADTEEDKAIALYIEG-VRNGKKFMEVAKRV- 226 (457)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHTTCEESEEEECTTCCSS-CHHHHHHHHTTCSSCCEEEEEESC-CSCHHHHHHHHHHH-
T ss_pred CCEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCCcCCC-CHHHHHHHHhcCCCCCEEEEEEec-CCCHHHHHHHHHHh-
Confidence 999999999999999999999999766777878877753 489999999999999999986543 22232322322222
Q ss_pred HHcCCCCcEEEEeCCCCH-----------------HHHHHHHHHCCCCcccCCCHHHHH
Q psy12143 376 QELSLKIPIICRLQGTNV-----------------DDAKVLIASAAMKILPCDNLDEAA 417 (443)
Q Consensus 376 ~~~~~~kpiv~~~~g~~~-----------------~~~~~~L~~~GiP~~~f~s~e~Av 417 (443)
. .+||||+...|... ......|++.|+.. .+++++-.
T Consensus 227 ~---~~KPVv~~k~G~~~~g~~aa~~Htgalag~~~~~~AafRqaGv~~--v~~~~El~ 280 (457)
T 2csu_A 227 T---KKKPIIALKAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLV--ANTIDEML 280 (457)
T ss_dssp H---HHSCEEEEECC------------------CHHHHHHHHHHTTCEE--ESSHHHHH
T ss_pred c---CCCCEEEEEcCCCccccchhhcccCccCCcHHHHHHHHHhCCCeE--ECCHHHHH
Confidence 2 25999987654321 11234788899876 77876543
No 84
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=97.09 E-value=7.6e-05 Score=73.88 Aligned_cols=80 Identities=19% Similarity=0.156 Sum_probs=47.2
Q ss_pred HHHHHHHHCCCCCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHHHHHHhhc
Q psy12143 40 VSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGD 119 (443)
Q Consensus 40 ~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a~~~l~~~ 119 (443)
.-|++|+++|||+|++.- .+|+ +++| |+++||... +.|+ |+.+++| +|+.++++.+
T Consensus 101 ~~~~~l~~~Gip~P~~~~---~ee~-----~i~~-PviVKp~~g--~ggk---------G~~~v~~-eel~~~~~~~--- 156 (320)
T 2pbz_A 101 LQDKALEGAGIPRVEVVE---PEDA-----KPDE-LYFVRIEGP--RGGS---------GHFIVEG-SELEERLSTL--- 156 (320)
T ss_dssp HHHHHHHHHTCCBCCBCC---SCCC-----CSSC-CEEEECC-----------------------C-EECSCCCC-----
T ss_pred HHHHHHHHCCcCCCCeeC---HhHc-----CcCC-cEEEEECCC--CCCC---------CEEEECh-HHHHHHHHhc---
Confidence 356899999999999873 3333 5898 999999633 2333 7888888 8875543221
Q ss_pred hhhhhhcCCCCcccCeEEEEeeeCCCeeeEEEEEEecc
Q psy12143 120 YLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERS 157 (443)
Q Consensus 120 ~~~~~~~~~~g~~~~~vlVE~~v~~g~El~vgv~~D~~ 157 (443)
+ ..++||+|++ +.+....+..++.
T Consensus 157 ----------~---~~~IiEEfI~-g~~~~~~~f~~~~ 180 (320)
T 2pbz_A 157 ----------E---EPYRVERFIP-GVYLYVHFFYSPI 180 (320)
T ss_dssp ---------------CCEEEECCC-SCEEEEEEEEETT
T ss_pred ----------C---CCEEEEeeec-eEecceeEEeccc
Confidence 0 3589999999 6776644555544
No 85
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=86.00 E-value=4.2 Score=37.46 Aligned_cols=122 Identities=11% Similarity=-0.014 Sum_probs=67.5
Q ss_pred CcEEEEEcchhHHHH--HHHHHHHcCCCC--------------CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q psy12143 296 GSIGCLVNGAGLAMA--TMDIIKLHGGEP--------------ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFG 359 (443)
Q Consensus 296 g~iaiitngGG~g~l--a~D~~~~~G~~~--------------~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~ 359 (443)
..+.+||.||+.|+| +++.+.+.|+.. .|++.-.--...-..++.+-.-++ |++++ ++|
T Consensus 40 ~g~~lV~GGg~~GlM~aa~~gA~~~GG~~iGv~p~~l~~~e~~~~~~~~~~~~~~~~~Rk~~~~~~s----da~I~-lpG 114 (216)
T 1ydh_A 40 RKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEISGETVGDVRVVADMHERKAAMAQEA----EAFIA-LPG 114 (216)
T ss_dssp TTCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEEGGGHHHHCCSSCCSEEEEESSHHHHHHHHHHHC----SEEEE-CSC
T ss_pred CCCEEEECCCcccHhHHHHHHHHHcCCcEEEEechhcCccccccCCCCcccccCCHHHHHHHHHHhC----CEEEE-eCC
Confidence 357888887755777 668888888642 232210000111123333333333 46554 777
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCcEEEEeC-CCC--HHHHHHHHHHCCC-------CcccCCCHHHHHHHHHHH
Q psy12143 360 GIMRCDVIAEGIIAAAQELSLKIPIICRLQ-GTN--VDDAKVLIASAAM-------KILPCDNLDEAARLAVKL 423 (443)
Q Consensus 360 ~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~-g~~--~~~~~~~L~~~Gi-------P~~~f~s~e~Av~al~~l 423 (443)
+....+++.+.+.-..-.. ++|||++.-. |-. -.+..+.+.+.|. -+++.+|++++++.+..+
T Consensus 115 G~GTLdElfE~lt~~qlg~-~~kPvvll~~~gfw~~l~~~l~~~~~~Gfi~~~~~~~~~~~d~~ee~~~~l~~~ 187 (216)
T 1ydh_A 115 GYGTMEELLEMITWSQLGI-HKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELMEKMEEY 187 (216)
T ss_dssp SHHHHHHHHHHHHHHHHTS-CCCEEEEECGGGTTHHHHHHHHHHHHTTSSCHHHHTTEEEESSHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHhcc-cCCCEEEecCCccchHHHHHHHHHHHCCCCChHHcCeEEEeCCHHHHHHHHHHh
Confidence 7555678877764432222 5899986532 322 1222355666664 123479999999988653
No 86
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=81.07 E-value=22 Score=30.95 Aligned_cols=123 Identities=20% Similarity=0.287 Sum_probs=73.2
Q ss_pred CCcEEEEEcc------hhHHHHHHHHHHHcC-CCCCCe--eeecCCCCHHHHHHHHHHHHcCCCccEEEE--Ecc-CCCC
Q psy12143 295 DGSIGCLVNG------AGLAMATMDIIKLHG-GEPANF--LDVGGGATAAQVKEAFKIITADPKVCAIMV--NIF-GGIM 362 (443)
Q Consensus 295 ~g~iaiitng------GG~g~la~D~~~~~G-~~~~NP--vDl~g~~~~~~~~~al~~ll~dp~vd~vlv--~i~-~~~~ 362 (443)
+-||+|+..- -.+---+.|.+..+| .+..|. +.+.|... +--+.+.+++..++|+|+. .+. |+..
T Consensus 12 ~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGafE---iP~aa~~la~~~~yDavIaLG~VIrG~T~ 88 (156)
T 3nq4_A 12 DARVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYE---LPLATEALAKSGKYDAVVALGTVIRGGTA 88 (156)
T ss_dssp TCCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCCTTSEEEEEESSTTT---HHHHHHHHHHHCSCSEEEEEEEEECCSST
T ss_pred CCEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCcccceEEEEcCcHHH---HHHHHHHHHhcCCCCEEEEeeeeecCCch
Confidence 4468887542 245556889999999 766555 34445444 3345566667788999997 222 3333
Q ss_pred C----hHHHHHHHHHHHHHcCCCCcEEEEe-CCCCHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHHHHH
Q psy12143 363 R----CDVIAEGIIAAAQELSLKIPIICRL-QGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSSIV 427 (443)
Q Consensus 363 ~----~~~~a~~i~~~~~~~~~~kpiv~~~-~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~~~ 427 (443)
. |..++++|.+..-+ +++||.... ...+.+++ ++..|.-. -+-=.+|+.+...++++.
T Consensus 89 Hfd~Va~~v~~Gl~~v~L~--~~vPV~~GVLT~~~~eQA---~~Rag~~~--~nKG~eaA~aalem~~l~ 151 (156)
T 3nq4_A 89 HFEYVAGGASNGLASVAQD--SGVPVAFGVLTTESIEQA---IERAGTKA--GNKGAEAALTALEMINVL 151 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCCCEEEEEEEESCHHHH---HHHBTSTT--CBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc--cCCCEEEEEeCCCCHHHH---HHHhCCcc--cccHHHHHHHHHHHHHHH
Confidence 3 34555666666555 579998754 33455544 44455322 223456777777777664
No 87
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=80.71 E-value=16 Score=31.89 Aligned_cols=123 Identities=19% Similarity=0.201 Sum_probs=70.9
Q ss_pred CcEEEEEcc------hhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEE--EccCC-CCC---
Q psy12143 296 GSIGCLVNG------AGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMV--NIFGG-IMR--- 363 (443)
Q Consensus 296 g~iaiitng------GG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv--~i~~~-~~~--- 363 (443)
-||+|+... ..+---+.|.+..+|.+ .| +|+--=+-.-.+--+.+.+.+..++|+|+. .+.-| ...
T Consensus 14 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~Gv~-~~-i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~ 91 (156)
T 1c2y_A 14 FRFAIVVARFNEFVTRRLMEGALDTFKKYSVN-ED-IDVVWVPGAYELGVTAQALGKSGKYHAIVCLGAVVKGDTSHYDA 91 (156)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHHTTCC-SC-CEEEEESSHHHHHHHHHHHHHTTCCSEEEEEEECCCCSSTHHHH
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCC-Cc-eEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccccCCchHHHH
Confidence 468887543 24555577999999976 43 333211112224456677788889999997 23323 333
Q ss_pred -hHHHHHHHHHHHHHcCCCCcEEEEeC-CCCHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHHHHH
Q psy12143 364 -CDVIAEGIIAAAQELSLKIPIICRLQ-GTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSSIV 427 (443)
Q Consensus 364 -~~~~a~~i~~~~~~~~~~kpiv~~~~-g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~~~ 427 (443)
|..++++|.+..-+ +++||..... ..+.+.+. +..|... -+-=.+|+.+...|+++.
T Consensus 92 Va~~v~~gl~~v~L~--~~vPV~~GVLT~~~~eQA~---~Rag~~~--~nKG~eaA~aAlem~~l~ 150 (156)
T 1c2y_A 92 VVNSASSGVLSAGLN--SGVPCVFGVLTCDNMDQAI---NRAGGKA--GNKGAESALTAIEMASLF 150 (156)
T ss_dssp HHHHHHHHHHHHHHH--HTSCEEEEEECCSSHHHHH---HHEEETT--EEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh--cCCCEEEEEeCCCCHHHHH---HHcCCcc--cchHHHHHHHHHHHHHHH
Confidence 34555666666555 5799997544 44555443 3344222 122456677767776665
No 88
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=78.74 E-value=0.28 Score=47.86 Aligned_cols=46 Identities=17% Similarity=0.295 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHH------------HHHH-HHHHcCCCeEEEEEee
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKK------------EAGE-IAKKLNIKDIVLKAQV 82 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~------------ea~~-~a~~lg~~PvVlK~~~ 82 (443)
.+...+.++|+++|||+|++.++.... ++.+ ..+.+|+ |+|.||.+
T Consensus 96 ~DK~~~~~iL~~~gIPtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l~k-PfVeKPv~ 154 (330)
T 3t7a_A 96 QDRREVYSILQAEGILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQK-PFVEKPVS 154 (330)
T ss_dssp TBHHHHHHHHHHTTCCCCCEEEECCBTTBGGGSSEEECSSEEEETTEEEES-SEEEEESB
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeCCCCCccccceeccchhhhhccccccC-CeeEcccc
Confidence 456679999999999999999986421 1111 2356788 99999963
No 89
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=74.26 E-value=19 Score=31.31 Aligned_cols=122 Identities=20% Similarity=0.284 Sum_probs=72.1
Q ss_pred CcEEEEEcc------hhHHHHHHHHHHHcCCCCCCe--eeecCCCCHHHHHHHHHHHHcCCCccEEEE--Ecc-CCCCC-
Q psy12143 296 GSIGCLVNG------AGLAMATMDIIKLHGGEPANF--LDVGGGATAAQVKEAFKIITADPKVCAIMV--NIF-GGIMR- 363 (443)
Q Consensus 296 g~iaiitng------GG~g~la~D~~~~~G~~~~NP--vDl~g~~~~~~~~~al~~ll~dp~vd~vlv--~i~-~~~~~- 363 (443)
-||+|+... ..+---+.|.+..+|.+..|. +.+.|... +--+.+.+++..++|+|+. .+. |+...
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafE---iP~aa~~la~~~~yDavIalG~VIrG~T~Hf 89 (154)
T 1hqk_A 13 LRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWE---IPVAAGELARKEDIDAVIAIGVLIRGATPHF 89 (154)
T ss_dssp CCEEEEEECTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGG---HHHHHHHHHTCTTCCEEEEEEEEECCSSTHH
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHH---HHHHHHHHHhcCCCCEEEEeeeeecCCchHH
Confidence 468887543 245556789999999775543 33334333 3445677788889999997 222 33333
Q ss_pred ---hHHHHHHHHHHHHHcCCCCcEEEEe-CCCCHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHHHHH
Q psy12143 364 ---CDVIAEGIIAAAQELSLKIPIICRL-QGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSSIV 427 (443)
Q Consensus 364 ---~~~~a~~i~~~~~~~~~~kpiv~~~-~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~~~ 427 (443)
|..++++|.+..-+ +++||.... ...+.+++.+ ..|... -+--.+|+.+...|.++.
T Consensus 90 d~Va~~vs~gl~~v~l~--~~vPV~~GVLT~~~~eQA~~---Rag~~~--~nkG~eaA~aalem~~l~ 150 (154)
T 1hqk_A 90 DYIASEVSKGLANLSLE--LRKPITFGVITADTLEQAIE---RAGTKH--GNKGWEAALSAIEMANLF 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHH--HTSCEEEEEEEESSHHHHHH---HEEETT--EEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh--cCCCEEEEEeCCCCHHHHHH---Hhcccc--cchHHHHHHHHHHHHHHH
Confidence 34555677666555 579998653 3334555543 345322 122456666666666654
No 90
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=73.85 E-value=44 Score=31.73 Aligned_cols=100 Identities=12% Similarity=0.038 Sum_probs=61.1
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHHH-HcCCCCcEEEEeCCCCHHHHHH
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAAQ-ELSLKIPIICRLQGTNVDDAKV 398 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~~-~~~~~kpiv~~~~g~~~~~~~~ 398 (443)
--|.| -|+.+.+.+.+-++.+.+ .++|+++++-..|. .+.++- ..+++... ..+.+.||++..++.+..++++
T Consensus 10 vTPf~-dg~iD~~~l~~lv~~li~-~Gv~gl~~~GttGE~~~Ls~~Er-~~v~~~~~~~~~grvpviaGvg~~~t~~ai~ 86 (294)
T 2ehh_A 10 ITPFK-EGEVDYEALGNLIEFHVD-NGTDAILVCGTTGESPTLTFEEH-EKVIEFAVKRAAGRIKVIAGTGGNATHEAVH 86 (294)
T ss_dssp CCCEE-TTEECHHHHHHHHHHHHT-TTCCEEEESSTTTTGGGSCHHHH-HHHHHHHHHHHTTSSEEEEECCCSCHHHHHH
T ss_pred ecCcC-CCCcCHHHHHHHHHHHHH-CCCCEEEECccccChhhCCHHHH-HHHHHHHHHHhCCCCcEEEecCCCCHHHHHH
Confidence 46888 899999999999999886 58999998544442 222222 22333322 2234689998777766566543
Q ss_pred ---HHHHCCC-------CcccCCCHHHHHHHHHHHHH
Q psy12143 399 ---LIASAAM-------KILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 399 ---~L~~~Gi-------P~~~f~s~e~Av~al~~l~~ 425 (443)
..++.|. |+|.-.+.+..++-+.++++
T Consensus 87 la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~ 123 (294)
T 2ehh_A 87 LTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQ 123 (294)
T ss_dssp HHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 4556663 66333466655555555443
No 91
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=73.29 E-value=8.6 Score=38.30 Aligned_cols=112 Identities=15% Similarity=0.123 Sum_probs=58.4
Q ss_pred ecCCcEEEEEcchhHHH-------HHHHHHHHcCCCCC-----Cee-eecCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q psy12143 293 ALDGSIGCLVNGAGLAM-------ATMDIIKLHGGEPA-----NFL-DVGGGATAAQVKEAFKIITADPKVCAIMVNIFG 359 (443)
Q Consensus 293 ~~~g~iaiitngGG~g~-------la~D~~~~~G~~~~-----NPv-Dl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~ 359 (443)
+.|.+|+||+.|+|... .+...++..|.++. .-- ......+.++ .+-|..+++||+||+|++...|
T Consensus 41 k~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~R-a~dL~~af~Dp~i~aI~~~rGG 119 (371)
T 3tla_A 41 AVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKER-AQEFNELVYNPDITCIMSTIGG 119 (371)
T ss_dssp CTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHH-HHHHHHHHTCTTEEEEEESCCC
T ss_pred CCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHH-HHHHHHHhhCCCCCEEEEcccc
Confidence 34667999999998642 45667888885431 111 1122223333 3446666789999999975433
Q ss_pred CCCChHHHHHHH-HHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcccCCCH
Q psy12143 360 GIMRCDVIAEGI-IAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNL 413 (443)
Q Consensus 360 ~~~~~~~~a~~i-~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~~f~s~ 413 (443)
-. +..+.+.| -+..++ .+|+++-++--+ .--..++.+.|++. |..|
T Consensus 120 yg--a~rlLp~LD~~~i~~--~PK~fiGySDiT--aL~~ai~~k~Gl~T--~hGP 166 (371)
T 3tla_A 120 DN--SNSLLPFLDYDAIIA--NPKIIIGYSDTT--ALLAGIYAKTGLIT--FYGP 166 (371)
T ss_dssp SC--GGGGGGGSCHHHHHH--SCCEEEECGGGH--HHHHHHHHHHCBCE--EECC
T ss_pred cc--HHHHHhhcChhhHHh--CCcEEEEechHH--HHHHHHHHHcCCEE--EECc
Confidence 22 11222222 122333 356554222111 01123566779887 5544
No 92
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=73.24 E-value=18 Score=31.47 Aligned_cols=122 Identities=24% Similarity=0.320 Sum_probs=71.7
Q ss_pred CcEEEEEcc------hhHHHHHHHHHHHcCCCCCCe--eeecCCCCHHHHHHHHHHHHcCCCccEEEE--Ecc-CCCCC-
Q psy12143 296 GSIGCLVNG------AGLAMATMDIIKLHGGEPANF--LDVGGGATAAQVKEAFKIITADPKVCAIMV--NIF-GGIMR- 363 (443)
Q Consensus 296 g~iaiitng------GG~g~la~D~~~~~G~~~~NP--vDl~g~~~~~~~~~al~~ll~dp~vd~vlv--~i~-~~~~~- 363 (443)
-||+|+... ..+---+.|.+..+|.+..|. +.+.|... +--+.+.+++..++|+|+. .+. |+...
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafE---iP~aa~~la~~~~yDavIaLG~VIrG~T~Hf 89 (154)
T 1rvv_A 13 LKIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFE---IPFAAKKMAETKKYDAIITLGTVIRGATTHY 89 (154)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGG---HHHHHHHHHHTSCCSEEEEEEEEECCSSSHH
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHH---HHHHHHHHHhcCCCCEEEEeeeeecCCchHH
Confidence 468887543 245556789999999775543 33334333 3345677777888999997 222 33333
Q ss_pred ---hHHHHHHHHHHHHHcCCCCcEEEEe-CCCCHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHHHHH
Q psy12143 364 ---CDVIAEGIIAAAQELSLKIPIICRL-QGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSSIV 427 (443)
Q Consensus 364 ---~~~~a~~i~~~~~~~~~~kpiv~~~-~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~~~ 427 (443)
|..++++|.+..-+ +++||.... ...+.+++. +..|... -+--.+|+.+...|.++.
T Consensus 90 d~V~~~vs~Gl~~v~l~--~~vPV~~GVLT~~~~eQA~---~Rag~~~--~nkG~eaA~aalem~~l~ 150 (154)
T 1rvv_A 90 DYVCNEAAKGIAQAANT--TGVPVIFGIVTTENIEQAI---ERAGTKA--GNKGVDCAVSAIEMANLN 150 (154)
T ss_dssp HHHHHHHHHHHHHHHHH--HCSCEEEEEEEESSHHHHH---HTEEETT--EEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh--hCCCEEEEecCCCCHHHHH---HHhcccc--cchHHHHHHHHHHHHHHH
Confidence 34556677666555 579998653 333455553 3445322 122456666666666654
No 93
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=72.91 E-value=25 Score=30.62 Aligned_cols=122 Identities=16% Similarity=0.176 Sum_probs=70.9
Q ss_pred CcEEEEEcc------hhHHHHHHHHHHH-cCCCCCC--eeeecCCCCHHHHHHHHHHHHcCCCccEEEE--Ecc-CCCCC
Q psy12143 296 GSIGCLVNG------AGLAMATMDIIKL-HGGEPAN--FLDVGGGATAAQVKEAFKIITADPKVCAIMV--NIF-GGIMR 363 (443)
Q Consensus 296 g~iaiitng------GG~g~la~D~~~~-~G~~~~N--PvDl~g~~~~~~~~~al~~ll~dp~vd~vlv--~i~-~~~~~ 363 (443)
-||+|+..- ..+---+.|.+.. +|.+..| -+.+-|... +--+.+.+++..++|+|+. .+. |+...
T Consensus 18 ~riaIV~arfn~~I~~~Ll~ga~~~l~~~~Gv~~~~i~v~~VPGafE---iP~aa~~la~~~~yDavIaLG~VIrG~T~H 94 (159)
T 1kz1_A 18 LRILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWE---LPQGIRASIARNTYDAVIGIGVLIKGSTMH 94 (159)
T ss_dssp CCEEEEECCTTHHHHHHHHHHHHHHHHHHHCCCGGGEEEEECSSGGG---HHHHHHHHHHHSCCSEEEEEEEEECCSSSH
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHH---HHHHHHHHHhcCCCCEEEEecccccCCchH
Confidence 468888643 2455557799999 8987666 344444433 3345566677788999997 222 33333
Q ss_pred ----hHHHHHHHHHHHHHcCCCCcEEEEe-CCCCHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHHHH
Q psy12143 364 ----CDVIAEGIIAAAQELSLKIPIICRL-QGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSSI 426 (443)
Q Consensus 364 ----~~~~a~~i~~~~~~~~~~kpiv~~~-~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~~ 426 (443)
|..++++|.+..-+ +++||.... ...+.+++.+ ..|..- .-+-=.+|+.+...++++
T Consensus 95 fd~Va~~v~~Gl~~v~L~--~~vPV~~GVLT~~~~eQA~~---Rag~~~-~~nKG~eaA~aalem~~l 156 (159)
T 1kz1_A 95 FEYISEAVVHGLMRVGLD--SGVPVILGLLTVLNEEQALY---RAGLNG-GHNHGNDWGSAAVEMGLK 156 (159)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCCCEEEEEEEESSHHHHHH---HBTCTT-CCBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh--cCCCEEEEEeCCCCHHHHHH---HhCCcc-ccchHHHHHHHHHHHHHh
Confidence 34555666666555 579998644 3335555443 345311 012245666666666654
No 94
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=72.07 E-value=41 Score=31.86 Aligned_cols=101 Identities=8% Similarity=0.051 Sum_probs=61.1
Q ss_pred CCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHHH-HcCCCCcEEEEeCCCCHHHHH
Q psy12143 322 PANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAAQ-ELSLKIPIICRLQGTNVDDAK 397 (443)
Q Consensus 322 ~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~~-~~~~~kpiv~~~~g~~~~~~~ 397 (443)
+--|.| -|+.+.+.+.+-++.+.+ .++|+++++-..|. .+.++- ..+++... ..+.+.||++..++++..+++
T Consensus 9 ~vTPf~-dg~iD~~~l~~lv~~li~-~Gv~gl~~~GttGE~~~Ls~~Er-~~v~~~~~~~~~gr~pviaGvg~~~t~~ai 85 (289)
T 2yxg_A 9 IITPFK-NKEVDFDGLEENINFLIE-NGVSGIVAVGTTGESPTLSHEEH-KKVIEKVVDVVNGRVQVIAGAGSNCTEEAI 85 (289)
T ss_dssp CCCCEE-TTEECHHHHHHHHHHHHH-TTCSEEEESSTTTTGGGSCHHHH-HHHHHHHHHHHTTSSEEEEECCCSSHHHHH
T ss_pred eecCcC-CCCcCHHHHHHHHHHHHH-CCCCEEEECccccChhhCCHHHH-HHHHHHHHHHhCCCCcEEEeCCCCCHHHHH
Confidence 356888 899999999999999886 58999998544442 222222 22333322 223468999877776555654
Q ss_pred H---HHHHCC-------CCcccCCCHHHHHHHHHHHHH
Q psy12143 398 V---LIASAA-------MKILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 398 ~---~L~~~G-------iP~~~f~s~e~Av~al~~l~~ 425 (443)
+ ..++.| -|+|.-.+.+..++-+.++++
T Consensus 86 ~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~ 123 (289)
T 2yxg_A 86 ELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAE 123 (289)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 3 445556 266333466655555555443
No 95
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=70.76 E-value=5.4 Score=37.01 Aligned_cols=56 Identities=20% Similarity=0.270 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHcCCCccEEEEE--ccCC-CCChHHHHHHHHHHHHHcCCCCcEEEEe
Q psy12143 331 GATAAQVKEAFKIITADPKVCAIMVN--IFGG-IMRCDVIAEGIIAAAQELSLKIPIICRL 388 (443)
Q Consensus 331 ~~~~~~~~~al~~ll~dp~vd~vlv~--i~~~-~~~~~~~a~~i~~~~~~~~~~kpiv~~~ 388 (443)
..+.+.+.++++.+.+||++++|++. .+++ ......+.+.+.++.++ .+|||++..
T Consensus 28 ~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~i~~~l~~~~~~--~~kPVia~v 86 (240)
T 3rst_A 28 GYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEIKKE--TKKPIYVSM 86 (240)
T ss_dssp CCCHHHHHHHHHHHHHCTTEEEEEEEEEECCBCHHHHHHHHHHHHHHHHH--HCCCEEEEE
T ss_pred CcCHHHHHHHHHHHHhCCCcEEEEEEecCCCCCHHHHHHHHHHHHHHHHh--CCCeEEEEE
Confidence 34567799999999999999999984 3443 22234444544443332 279998654
No 96
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=69.70 E-value=38 Score=32.42 Aligned_cols=99 Identities=11% Similarity=0.042 Sum_probs=59.7
Q ss_pred CCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHHH-HcCCCCcEEEEeCCCCHHHHH
Q psy12143 322 PANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAAQ-ELSLKIPIICRLQGTNVDDAK 397 (443)
Q Consensus 322 ~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~~-~~~~~kpiv~~~~g~~~~~~~ 397 (443)
+--|+| -|+.+.+.+.+-++.+.+. ++|+++++-..|. .+.++- ..+++... ..+.+.||++..++.+..+++
T Consensus 21 ~vTPf~-dg~iD~~~l~~lv~~li~~-Gv~gl~v~GtTGE~~~Ls~eEr-~~vi~~~~~~~~grvpViaGvg~~st~~ai 97 (306)
T 1o5k_A 21 IVTPFK-NGELDLESYERLVRYQLEN-GVNALIVLGTTGESPTVNEDER-EKLVSRTLEIVDGKIPVIVGAGTNSTEKTL 97 (306)
T ss_dssp CCCCEE-TTEECHHHHHHHHHHHHHT-TCCEEEESSGGGTGGGCCHHHH-HHHHHHHHHHHTTSSCEEEECCCSCHHHHH
T ss_pred eecCcC-CCCcCHHHHHHHHHHHHHc-CCCEEEeCccccchhhCCHHHH-HHHHHHHHHHhCCCCeEEEcCCCccHHHHH
Confidence 467888 8999999999999998875 8999998544332 222222 22333322 223468999887776656654
Q ss_pred H---HHHHCC-------CCcccCCCHHHHHHHHHHH
Q psy12143 398 V---LIASAA-------MKILPCDNLDEAARLAVKL 423 (443)
Q Consensus 398 ~---~L~~~G-------iP~~~f~s~e~Av~al~~l 423 (443)
+ ..++.| -|+|.-.+.+..++-+.++
T Consensus 98 ~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~v 133 (306)
T 1o5k_A 98 KLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYI 133 (306)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHH
Confidence 3 445556 2653233555544444444
No 97
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=69.42 E-value=47 Score=31.52 Aligned_cols=102 Identities=13% Similarity=0.096 Sum_probs=61.1
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHHH-HcCCCCcEEEEeCCCCHHHHHH
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAAQ-ELSLKIPIICRLQGTNVDDAKV 398 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~~-~~~~~kpiv~~~~g~~~~~~~~ 398 (443)
--|.|=-|+.+.+.+.+-++.+.++.++|+++++-..|. .+.++- ..+++... ..+.+.||++..++++..++++
T Consensus 12 vTPf~~dg~iD~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er-~~v~~~~~~~~~grvpviaGvg~~~t~~ai~ 90 (293)
T 1f6k_A 12 LVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEK-KEIFRIAKDEAKDQIALIAQVGSVNLKEAVE 90 (293)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHH-HHHHHHHHHHHTTSSEEEEECCCSCHHHHHH
T ss_pred EcCCCCCCCcCHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHH-HHHHHHHHHHhCCCCeEEEecCCCCHHHHHH
Confidence 356665688898999999999987568999998544332 222222 22233322 2234689998877766566543
Q ss_pred ---HHHHCC-------CCcccCCCHHHHHHHHHHHHH
Q psy12143 399 ---LIASAA-------MKILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 399 ---~L~~~G-------iP~~~f~s~e~Av~al~~l~~ 425 (443)
..++.| -|+|.-.+.+..++-+.++++
T Consensus 91 la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~ 127 (293)
T 1f6k_A 91 LGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIA 127 (293)
T ss_dssp HHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 445556 266333466655555555544
No 98
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=68.85 E-value=12 Score=36.66 Aligned_cols=67 Identities=13% Similarity=0.166 Sum_probs=40.2
Q ss_pred eecCCcEEEEEcchhHHH-------HHHHHHHHcCCCCCC-----eeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 292 IALDGSIGCLVNGAGLAM-------ATMDIIKLHGGEPAN-----FLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 292 ~~~~g~iaiitngGG~g~-------la~D~~~~~G~~~~N-----PvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
.+.|.+|+|++.|+|... .+...++..|.++.. --+-.-..+.+.=.+-|..+++||+||+|++...
T Consensus 10 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 10 LKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 344677999999998742 356678888854311 1111112233322333556668999999997543
No 99
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=67.98 E-value=74 Score=30.25 Aligned_cols=101 Identities=10% Similarity=0.113 Sum_probs=59.9
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHHH-HcCCCCcEEEEeCCCCHHHHHH
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAAQ-ELSLKIPIICRLQGTNVDDAKV 398 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~~-~~~~~kpiv~~~~g~~~~~~~~ 398 (443)
--|.|=-|+.+.+.+.+-++.+.+. ++|+++++-..|. .+.++- ..+++... ..+.+.||++..++++..++++
T Consensus 21 vTPf~~dg~iD~~~l~~lv~~li~~-Gv~gl~v~GtTGE~~~Ls~eEr-~~v~~~~~~~~~grvpViaGvg~~~t~~ai~ 98 (301)
T 1xky_A 21 VTPFDINGNIDFAKTTKLVNYLIDN-GTTAIVVGGTTGESPTLTSEEK-VALYRHVVSVVDKRVPVIAGTGSNNTHASID 98 (301)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHHT-TCCEEEESSTTTTGGGSCHHHH-HHHHHHHHHHHTTSSCEEEECCCSCHHHHHH
T ss_pred ECcCCCCCCcCHHHHHHHHHHHHHc-CCCEEEECccccChhhCCHHHH-HHHHHHHHHHhCCCceEEeCCCCCCHHHHHH
Confidence 4566556888989899999998875 8999998544442 222222 22233222 2234689998877766566543
Q ss_pred ---HHHHCCC-------CcccCCCHHHHHHHHHHHHH
Q psy12143 399 ---LIASAAM-------KILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 399 ---~L~~~Gi-------P~~~f~s~e~Av~al~~l~~ 425 (443)
..++.|. |+|.-.+.+..++-+.++++
T Consensus 99 la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~ 135 (301)
T 1xky_A 99 LTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAE 135 (301)
T ss_dssp HHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence 4556663 66333466555555444443
No 100
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=67.79 E-value=22 Score=32.42 Aligned_cols=123 Identities=11% Similarity=0.038 Sum_probs=62.9
Q ss_pred CcEEEEEcchhHHHH--HHHHHHHcCCCC--------------CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q psy12143 296 GSIGCLVNGAGLAMA--TMDIIKLHGGEP--------------ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFG 359 (443)
Q Consensus 296 g~iaiitngGG~g~l--a~D~~~~~G~~~--------------~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~ 359 (443)
..+.+||.||..|+| +++.+.+.|+.. .|+++-.-....-+-++.+=.-+ -|++++ +++
T Consensus 44 ~G~~vVsGGg~~GiM~aa~~gAl~~GG~tiGVlP~~~~~~e~~~~~~~~~~~~~~f~~Rk~~~~~~----sda~Vv-lpG 118 (215)
T 2a33_A 44 RNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGIIPKTLMPRELTGETVGEVRAVADMHQRKAEMAKH----SDAFIA-LPG 118 (215)
T ss_dssp TTCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEESSCC--------CCEEEEESSHHHHHHHHHHT----CSEEEE-CSC
T ss_pred CCCEEEECCChhhHhHHHHHHHHHcCCcEEEEcchHhcchhhccCCCCceeecCCHHHHHHHHHHh----CCEEEE-eCC
Confidence 357888777644666 668888888641 11111000111112233222222 356655 677
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCcEEEEeC-CCC--HHHHHHHHHHCCC-------CcccCCCHHHHHHHHHHHH
Q psy12143 360 GIMRCDVIAEGIIAAAQELSLKIPIICRLQ-GTN--VDDAKVLIASAAM-------KILPCDNLDEAARLAVKLS 424 (443)
Q Consensus 360 ~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~-g~~--~~~~~~~L~~~Gi-------P~~~f~s~e~Av~al~~l~ 424 (443)
+....+++.+.+.-..-. .++|||+..-. |-. -.+..+.+.+.|. -+++.+|++++++.+....
T Consensus 119 G~GTLdElfE~lt~~qlg-~~~kPvvll~~~g~w~~l~~~l~~~~~~Gfi~~~~~~~~~~~d~~ee~~~~l~~~~ 192 (215)
T 2a33_A 119 GYGTLEELLEVITWAQLG-IHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPTAKELVKKLEEYA 192 (215)
T ss_dssp CHHHHHHHHHHHHHHHTT-SCCCCEEEECGGGTTHHHHHHHHHHHHHTSSCHHHHTTEEEESSHHHHHHHHHC--
T ss_pred CCchHHHHHHHHHHHHhC-CCCCCeEEecCcchhHHHHHHHHHHHHcCCCCHHHCCeEEEeCCHHHHHHHHHHhc
Confidence 754467777765443212 25799987533 322 1122344445553 1234799999999886543
No 101
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=66.95 E-value=77 Score=30.18 Aligned_cols=101 Identities=11% Similarity=0.053 Sum_probs=60.3
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC--CC-hHHHHHHHHHHHH-HcCCCCcEEEEeCCCCHHHHHH
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI--MR-CDVIAEGIIAAAQ-ELSLKIPIICRLQGTNVDDAKV 398 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~--~~-~~~~a~~i~~~~~-~~~~~kpiv~~~~g~~~~~~~~ 398 (443)
--|.|=-|+.+.+.+.+-++.+.+. ++|+++++-..|. .. .++- ..+++... ..+.+.||++..++.+..++++
T Consensus 25 vTPf~~dg~iD~~~l~~lv~~li~~-Gv~gl~v~GttGE~~~Ls~~Er-~~v~~~~~~~~~grvpviaGvg~~st~~ai~ 102 (304)
T 3cpr_A 25 VTPFTESGDIDIAAGREVAAYLVDK-GLDSLVLAGTTGESPTTTAAEK-LELLKAVREEVGDRAKLIAGVGTNNTRTSVE 102 (304)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHT-TCCEEEESSTTTTTTTSCHHHH-HHHHHHHHHHHTTTSEEEEECCCSCHHHHHH
T ss_pred eccCCCCCCcCHHHHHHHHHHHHHc-CCCEEEECccccChhhCCHHHH-HHHHHHHHHHhCCCCcEEecCCCCCHHHHHH
Confidence 4566666889989999999998875 8999998544442 22 2222 22233322 2234689998877766566543
Q ss_pred ---HHHHCCC-------CcccCCCHHHHHHHHHHHHH
Q psy12143 399 ---LIASAAM-------KILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 399 ---~L~~~Gi-------P~~~f~s~e~Av~al~~l~~ 425 (443)
..++.|. |+|.-.+.+..++-+.++++
T Consensus 103 la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~ 139 (304)
T 3cpr_A 103 LAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAA 139 (304)
T ss_dssp HHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 4556663 66333465555555444443
No 102
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=65.49 E-value=71 Score=30.31 Aligned_cols=101 Identities=11% Similarity=0.113 Sum_probs=60.9
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHH-HHHcCCCCcEEEEeCCCCHHHHHH
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAA-AQELSLKIPIICRLQGTNVDDAKV 398 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~-~~~~~~~kpiv~~~~g~~~~~~~~ 398 (443)
--|+|=-|+.+.+.+.+-++.+.+ .++|+++++-..|. .+.++-. .+++. .+..+.+.||++..++++..++++
T Consensus 16 vTPf~~dg~iD~~~l~~lv~~li~-~Gv~gl~~~GttGE~~~Ls~~Er~-~v~~~~~~~~~grvpviaGvg~~~t~~ai~ 93 (297)
T 3flu_A 16 ITPMNQDGSIHYEQLRDLIDWHIE-NGTDGIVAVGTTGESATLSVEEHT-AVIEAVVKHVAKRVPVIAGTGANNTVEAIA 93 (297)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHH-TTCCEEEESSTTTTGGGSCHHHHH-HHHHHHHHHHTTSSCEEEECCCSSHHHHHH
T ss_pred eccCCCCCCcCHHHHHHHHHHHHH-cCCCEEEeCccccCcccCCHHHHH-HHHHHHHHHhCCCCcEEEeCCCcCHHHHHH
Confidence 456766788998999999999885 68999998544442 2223222 22332 222234689998777665566543
Q ss_pred ---HHHHCCC-------CcccCCCHHHHHHHHHHHHH
Q psy12143 399 ---LIASAAM-------KILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 399 ---~L~~~Gi-------P~~~f~s~e~Av~al~~l~~ 425 (443)
..++.|. |+|.-.+.+..++-+.++++
T Consensus 94 la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~ 130 (297)
T 3flu_A 94 LSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAE 130 (297)
T ss_dssp HHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 5566673 66433455555554444443
No 103
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=64.65 E-value=67 Score=30.66 Aligned_cols=102 Identities=7% Similarity=-0.033 Sum_probs=62.2
Q ss_pred CCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHH-HHHcCCCCcEEEEeCCCCHHHHH
Q psy12143 322 PANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAA-AQELSLKIPIICRLQGTNVDDAK 397 (443)
Q Consensus 322 ~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~-~~~~~~~kpiv~~~~g~~~~~~~ 397 (443)
+--|.|=-|+.+.+.+.+-++.+.+ .++|+++++-..|. ...++-. .+++. .+..+.+.||++..++.+..+.+
T Consensus 23 ~vTPf~~dg~iD~~~l~~lv~~li~-~Gv~gi~v~GttGE~~~Lt~~Er~-~v~~~~~~~~~grvpviaGvg~~~t~~ai 100 (304)
T 3l21_A 23 MVTPFSGDGSLDTATAARLANHLVD-QGCDGLVVSGTTGESPTTTDGEKI-ELLRAVLEAVGDRARVIAGAGTYDTAHSI 100 (304)
T ss_dssp CCCCBCTTSCBCHHHHHHHHHHHHH-TTCSEEEESSTTTTGGGSCHHHHH-HHHHHHHHHHTTTSEEEEECCCSCHHHHH
T ss_pred EECCCCCCCCcCHHHHHHHHHHHHH-cCCCEEEeCccccchhhCCHHHHH-HHHHHHHHHhCCCCeEEEeCCCCCHHHHH
Confidence 4567777788999999999999986 48999998544442 2223222 23333 22223468999887766555654
Q ss_pred H---HHHHCCC-------CcccCCCHHHHHHHHHHHHH
Q psy12143 398 V---LIASAAM-------KILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 398 ~---~L~~~Gi-------P~~~f~s~e~Av~al~~l~~ 425 (443)
+ ..++.|. |+|.-.+.+..++-+.++++
T Consensus 101 ~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~ 138 (304)
T 3l21_A 101 RLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVAD 138 (304)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 3 5555663 66434466655555444443
No 104
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=64.40 E-value=15 Score=33.66 Aligned_cols=119 Identities=12% Similarity=0.089 Sum_probs=60.8
Q ss_pred cEEEEEcchhHHHH--HHHHHHHcCCCC------------CCee-eecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC
Q psy12143 297 SIGCLVNGAGLAMA--TMDIIKLHGGEP------------ANFL-DVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI 361 (443)
Q Consensus 297 ~iaiitngGG~g~l--a~D~~~~~G~~~------------~NPv-Dl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~ 361 (443)
.+.++|.|| .|+| +++.+.+.|+.. .|+. +-.-....-+-++.+=.-+ -|++++ ++++.
T Consensus 69 g~~lVsGGg-~GiM~aa~~gAl~~gG~~iGV~~~~P~~~~~~~~~t~~~~~~~f~~Rk~~m~~~----sda~Iv-lpGG~ 142 (217)
T 1wek_A 69 GFGVVTGGG-PGVMEAVNRGAYEAGGVSVGLNIELPHEQKPNPYQTHALSLRYFFVRKVLFVRY----AVGFVF-LPGGF 142 (217)
T ss_dssp TCEEEECSC-SHHHHHHHHHHHHTTCCEEEEEECCTTCCCCCSCCSEEEEESCHHHHHHHHHHT----EEEEEE-CSCCH
T ss_pred CCEEEeCCh-hhHHHHHHHHHHHcCCCEEEEeeCCcchhhccccCCcCcccCCHHHHHHHHHHh----CCEEEE-eCCCC
Confidence 477777555 7887 457777777541 2331 1000001111233222222 356665 67775
Q ss_pred CChHHHHHHHHHHHHHcC--CCCcEEEEeCCCC--HHHHHHHHHHCCC-------CcccCCCHHHHHHHHHHH
Q psy12143 362 MRCDVIAEGIIAAAQELS--LKIPIICRLQGTN--VDDAKVLIASAAM-------KILPCDNLDEAARLAVKL 423 (443)
Q Consensus 362 ~~~~~~a~~i~~~~~~~~--~~kpiv~~~~g~~--~~~~~~~L~~~Gi-------P~~~f~s~e~Av~al~~l 423 (443)
...+++.+.+.-. +.+ ++|||++.-.+-. -.+..+.+.+.|. -+++.+||+++++.+...
T Consensus 143 GTL~El~e~lt~~--qlg~~~~kPvvll~~~~w~~l~~~l~~~~~~Gfi~~~~~~~~~~~~~~~e~~~~l~~~ 213 (217)
T 1wek_A 143 GTLDELSEVLVLL--QTEKVHRFPVFLLDRGYWEGLVRWLAFLRDQKAVGPEDLQLFRLTDEPEEVVQALKAE 213 (217)
T ss_dssp HHHHHHHHHHHHH--HTTSSCCCCEEEECHHHHHHHHHHHHHHHHTTSSCTTGGGGSEEESCHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHH--hhCCCCCCCEEEeCcccchhHHHHHHHHHHCCCCCHHHcCeEEEeCCHHHHHHHHHHh
Confidence 4467777765432 232 4699986521110 1112255566663 123489999999987643
No 105
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=64.29 E-value=46 Score=31.49 Aligned_cols=121 Identities=15% Similarity=0.134 Sum_probs=68.7
Q ss_pred CcEEEEEcchhHHH------HHHHHHHHcCCCCCCeee-ecCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHH
Q psy12143 296 GSIGCLVNGAGLAM------ATMDIIKLHGGEPANFLD-VGGGATAAQ-VKEAFKIITADPKVCAIMVNIFGGIMRCDVI 367 (443)
Q Consensus 296 g~iaiitngGG~g~------la~D~~~~~G~~~~NPvD-l~g~~~~~~-~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~ 367 (443)
++|++++..-+... -..+++..+|. ..... ..++.+.+. +..+.+.+.+.|++++|++. .+.+
T Consensus 146 ~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~aI~~~-------~d~~ 216 (350)
T 3h75_A 146 IELLAFSGLKVTPAAQLRERGLRRALAEHPQ--VHLRQLVYGEWNRERAYRQAQQLLKRYPKTQLVWSA-------NDEM 216 (350)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHCTT--EEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEES-------SHHH
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC--eEEEEEeeCCCcHHHHHHHHHHHHHhCCCcCEEEEC-------ChHH
Confidence 46888875533211 13456666664 22222 346666665 45555555578999998851 3788
Q ss_pred HHHHHHHHHHcCCCCc--EE-EEeCCCCHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHHHHH
Q psy12143 368 AEGIIAAAQELSLKIP--II-CRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSSIV 427 (443)
Q Consensus 368 a~~i~~~~~~~~~~kp--iv-~~~~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~~~ 427 (443)
|.++++++++.+...| |. +.+.+ ...+.+.+....+-++..+..+-+..++..|.+++
T Consensus 217 a~g~~~al~~~G~~vP~di~vvg~d~--~~~~l~~~~~~~lttv~~~~~~~G~~av~~l~~~l 277 (350)
T 3h75_A 217 ALGAMQAARELGRKPGTDLLFSGVNS--SPEALQALIDGKLSVLEAGHFTLGGWALVALHDDA 277 (350)
T ss_dssp HHHHHHHHHHTTCCBTTTBEEEEESC--CHHHHHHHHHTSSCEEEECGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCeEEEecCC--CHHHHHHHHcCCeeEEEcCchhhHHHHHHHHHHHH
Confidence 8899999998765423 33 33333 34556666666665433443444444444555544
No 106
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=64.03 E-value=76 Score=30.35 Aligned_cols=102 Identities=7% Similarity=0.011 Sum_probs=61.7
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHH-
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKV- 398 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~- 398 (443)
--|+|=-|+.+.+.+.+-++.+.+ .++|+++++-..|. .+.++- ..+++...+...+.||++..++++..++++
T Consensus 17 vTPf~~dg~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Lt~~Er-~~v~~~~v~~~grvpViaGvg~~~t~~ai~l 94 (313)
T 3dz1_A 17 PTPFHDDGKIDDVSIDRLTDFYAE-VGCEGVTVLGILGEAPKLDAAEA-EAVATRFIKRAKSMQVIVGVSAPGFAAMRRL 94 (313)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHH-TTCSEEEESTGGGTGGGSCHHHH-HHHHHHHHHHCTTSEEEEECCCSSHHHHHHH
T ss_pred eCCCCCCCCcCHHHHHHHHHHHHH-CCCCEEEeCccCcChhhCCHHHH-HHHHHHHHHHcCCCcEEEecCCCCHHHHHHH
Confidence 456766688998999999999986 58999998544432 222332 233333322214689998777666556543
Q ss_pred --HHHHCCC------CcccCCCHHHHHHHHHHHHHH
Q psy12143 399 --LIASAAM------KILPCDNLDEAARLAVKLSSI 426 (443)
Q Consensus 399 --~L~~~Gi------P~~~f~s~e~Av~al~~l~~~ 426 (443)
..++.|. |-+.+.+.+..++-+.++++.
T Consensus 95 a~~A~~~Gadavlv~~P~~~~s~~~l~~~f~~va~a 130 (313)
T 3dz1_A 95 ARLSMDAGAAGVMIAPPPSLRTDEQITTYFRQATEA 130 (313)
T ss_dssp HHHHHHHTCSEEEECCCTTCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHh
Confidence 4555563 333355666666555555544
No 107
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=63.99 E-value=99 Score=29.21 Aligned_cols=102 Identities=9% Similarity=-0.069 Sum_probs=61.5
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC--CChHHHHHHHHHHHHHc-CCCCcEEEEeCCCCHHHHHH-
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI--MRCDVIAEGIIAAAQEL-SLKIPIICRLQGTNVDDAKV- 398 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~--~~~~~~a~~i~~~~~~~-~~~kpiv~~~~g~~~~~~~~- 398 (443)
--|+|=-|+.+.+.+.+-++.+.+. ++|+++++-..|. ....+=-..+++...+. +.+.||++..++.+..++++
T Consensus 12 vTPf~~dg~iD~~~l~~lv~~li~~-Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~l 90 (294)
T 3b4u_A 12 TTPFKTDGTVDIDAMIAHARRCLSN-GCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQ 90 (294)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHHT-TCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHH
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHHc-CCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHH
Confidence 3566656888989999999998875 8999998544442 22222223444444332 34589998877765556543
Q ss_pred --HHHHCCC-------CcccC-CCHHHHHHHHHHHHH
Q psy12143 399 --LIASAAM-------KILPC-DNLDEAARLAVKLSS 425 (443)
Q Consensus 399 --~L~~~Gi-------P~~~f-~s~e~Av~al~~l~~ 425 (443)
..++.|. |+|.- .+.+..++-+.++++
T Consensus 91 a~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~ 127 (294)
T 3b4u_A 91 SAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFS 127 (294)
T ss_dssp HHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHH
Confidence 4555662 55322 466655555555543
No 108
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=63.62 E-value=13 Score=36.19 Aligned_cols=67 Identities=13% Similarity=0.139 Sum_probs=40.7
Q ss_pred eecCCcEEEEEcchhHH-------HHHHHHHHHcCCCCC---Ce---eeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 292 IALDGSIGCLVNGAGLA-------MATMDIIKLHGGEPA---NF---LDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 292 ~~~~g~iaiitngGG~g-------~la~D~~~~~G~~~~---NP---vDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
.+.|.+|+|++.|++.. -.+...++..|.++. |- -... ..+.+.=.+-|..+++||+||+|+....
T Consensus 9 L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~-ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (331)
T 4e5s_A 9 LKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFA-SSSISSRVQDLHEAFRDPNVKAILTTLG 87 (331)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTS-SCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCcc-CCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 34467799999999864 135667888885431 10 1112 2233322344666668999999997544
Q ss_pred C
Q psy12143 359 G 359 (443)
Q Consensus 359 ~ 359 (443)
|
T Consensus 88 G 88 (331)
T 4e5s_A 88 G 88 (331)
T ss_dssp C
T ss_pred c
Confidence 3
No 109
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=63.45 E-value=60 Score=31.13 Aligned_cols=102 Identities=11% Similarity=0.055 Sum_probs=62.1
Q ss_pred CCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHHH-HcCCCCcEEEEeCCCCHHHHH
Q psy12143 322 PANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAAQ-ELSLKIPIICRLQGTNVDDAK 397 (443)
Q Consensus 322 ~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~~-~~~~~kpiv~~~~g~~~~~~~ 397 (443)
+--|+|=-|+.+.+.+.+-++.+.+ .++|+++++-..|. .+.++- ..+++... ..+.+.||++..++++..+++
T Consensus 15 ~vTPf~~dg~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~~Er-~~v~~~~~~~~~grvpViaGvg~~~t~~ai 92 (311)
T 3h5d_A 15 FITPFHEDGSINFDAIPALIEHLLA-HHTDGILLAGTTAESPTLTHDEE-LELFAAVQKVVNGRVPLIAGVGTNDTRDSI 92 (311)
T ss_dssp CCCCBCTTSSBCTTHHHHHHHHHHH-TTCCCEEESSTTTTGGGSCHHHH-HHHHHHHHHHSCSSSCEEEECCCSSHHHHH
T ss_pred eecCCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHH-HHHHHHHHHHhCCCCcEEEeCCCcCHHHHH
Confidence 3567766788888889999999885 58999998654442 222332 33333333 333468999877766555554
Q ss_pred ---HHHHHCCC--------CcccCCCHHHHHHHHHHHHH
Q psy12143 398 ---VLIASAAM--------KILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 398 ---~~L~~~Gi--------P~~~f~s~e~Av~al~~l~~ 425 (443)
+..++.|. |.|.-.+.+..++-+.++++
T Consensus 93 ~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~ 131 (311)
T 3h5d_A 93 EFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIAD 131 (311)
T ss_dssp HHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence 35566563 66433466655555444443
No 110
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=63.34 E-value=25 Score=27.41 Aligned_cols=67 Identities=16% Similarity=0.084 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHCCCCCCCeeecCCHHHHHHHHHHc--CCC--eEEEEEeecCCCCCccccccCccCcEEEeCCHHHHHH
Q psy12143 36 VHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKL--NIK--DIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEE 111 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~~~~v~s~~ea~~~a~~l--g~~--PvVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~ 111 (443)
..=..+|++|++.||+--..-+-.+++ +.+...++ |.. |+|+=. . |-+..+-+.+++++
T Consensus 15 p~C~~aK~~L~~~gi~y~~idi~~d~~-~~~~~~~~~~G~~tVP~I~i~------D----------g~~l~~~~~~el~~ 77 (92)
T 2lqo_A 15 GYCLRLKTALTANRIAYDEVDIEHNRA-AAEFVGSVNGGNRTVPTVKFA------D----------GSTLTNPSADEVKA 77 (92)
T ss_dssp SSHHHHHHHHHHTTCCCEEEETTTCHH-HHHHHHHHSSSSSCSCEEEET------T----------SCEEESCCHHHHHH
T ss_pred HhHHHHHHHHHhcCCceEEEEcCCCHH-HHHHHHHHcCCCCEeCEEEEe------C----------CEEEeCCCHHHHHH
Confidence 444579999999999865444445554 33334343 431 665321 1 33555678999999
Q ss_pred HHHHHhhc
Q psy12143 112 VAGKMIGD 119 (443)
Q Consensus 112 a~~~l~~~ 119 (443)
++.++.+.
T Consensus 78 ~L~el~gL 85 (92)
T 2lqo_A 78 KLVKIAGL 85 (92)
T ss_dssp HHHHHHCC
T ss_pred HHHHhcCC
Confidence 98888664
No 111
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=61.99 E-value=63 Score=31.05 Aligned_cols=102 Identities=9% Similarity=0.039 Sum_probs=62.1
Q ss_pred CCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHHH-HcCCCCcEEEEeCCCCHHHHH
Q psy12143 322 PANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAAQ-ELSLKIPIICRLQGTNVDDAK 397 (443)
Q Consensus 322 ~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~~-~~~~~kpiv~~~~g~~~~~~~ 397 (443)
+--|+|=-|+.+.+.+.+-++.+.+ .++|+++++-..|. .+.++- ..+++... ..+.+.||++..++++..+++
T Consensus 30 lvTPf~~dg~iD~~~l~~li~~li~-~Gv~Gl~v~GtTGE~~~Ls~~Er-~~v~~~~v~~~~grvpViaGvg~~st~~ai 107 (315)
T 3si9_A 30 LITPFDDNGAIDEKAFCNFVEWQIT-QGINGVSPVGTTGESPTLTHEEH-KRIIELCVEQVAKRVPVVAGAGSNSTSEAV 107 (315)
T ss_dssp CCCCBCTTSCBCHHHHHHHHHHHHH-TTCSEEECSSTTTTGGGSCHHHH-HHHHHHHHHHHTTSSCBEEECCCSSHHHHH
T ss_pred eECCCCCCCCcCHHHHHHHHHHHHH-cCCCEEEeCccccCccccCHHHH-HHHHHHHHHHhCCCCcEEEeCCCCCHHHHH
Confidence 3567766788999999999999886 68999997544432 222222 22333322 223468999877766656654
Q ss_pred H---HHHHCCC-------CcccCCCHHHHHHHHHHHHH
Q psy12143 398 V---LIASAAM-------KILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 398 ~---~L~~~Gi-------P~~~f~s~e~Av~al~~l~~ 425 (443)
+ ..++.|. |+|.-.+.+..++-+.++++
T Consensus 108 ~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~ 145 (315)
T 3si9_A 108 ELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAK 145 (315)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 3 5566673 66433466655555555444
No 112
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=60.90 E-value=83 Score=29.70 Aligned_cols=100 Identities=14% Similarity=0.109 Sum_probs=58.6
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHHH-HcCCCCcEEEEeCCCCHHHHHH
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAAQ-ELSLKIPIICRLQGTNVDDAKV 398 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~~-~~~~~kpiv~~~~g~~~~~~~~ 398 (443)
--|+|=-|+.+.+.+.+-++.+.+. ++|+++++-..|. .+.++- ..+++... ..+.+.||++..++.+..++++
T Consensus 10 vTPf~~dg~iD~~~l~~lv~~li~~-Gv~gl~~~GttGE~~~Ls~~Er-~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~ 87 (292)
T 2ojp_A 10 VTPMDEKGNVCRASLKKLIDYHVAS-GTSAIVSVGTTGESATLNHDEH-ADVVMMTLDLADGRIPVIAGTGANATAEAIS 87 (292)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHH-TCCEEEESSTTTTGGGSCHHHH-HHHHHHHHHHHTTSSCEEEECCCSSHHHHHH
T ss_pred eccCCCCCCcCHHHHHHHHHHHHHc-CCCEEEECccccchhhCCHHHH-HHHHHHHHHHhCCCCcEEEecCCccHHHHHH
Confidence 3466556888888899999988864 8999998544442 222222 22333322 2234689998877766666655
Q ss_pred HH---HHCC-------CCcccCCCHHHHHHHHHHHH
Q psy12143 399 LI---ASAA-------MKILPCDNLDEAARLAVKLS 424 (443)
Q Consensus 399 ~L---~~~G-------iP~~~f~s~e~Av~al~~l~ 424 (443)
.. ++.| -|+|.-.+.+..++-+.+++
T Consensus 88 la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia 123 (292)
T 2ojp_A 88 LTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIA 123 (292)
T ss_dssp HHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHH
Confidence 33 3445 26532246655555444443
No 113
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=60.61 E-value=1.1e+02 Score=29.08 Aligned_cols=101 Identities=10% Similarity=0.037 Sum_probs=60.2
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHHH-HcCCCCcEEEEeCCCCHHHHHH
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAAQ-ELSLKIPIICRLQGTNVDDAKV 398 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~~-~~~~~kpiv~~~~g~~~~~~~~ 398 (443)
--|+|=-|+.+.+.+.+-++.+.+ .++|+++++-..|. .+.++- ..+++... ..+.+.||++..++.+..++++
T Consensus 20 vTPF~~dg~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~eEr-~~v~~~~~~~~~grvpViaGvg~~~t~~ai~ 97 (303)
T 2wkj_A 20 LTPFDQQQALDKASLRRLVQFNIQ-QGIDGLYVGGSTGEAFVQSLSER-EQVLEIVAEEAKGKIKLIAHVGCVSTAESQQ 97 (303)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHH-TTCSEEEESSTTTTGGGSCHHHH-HHHHHHHHHHHTTTSEEEEECCCSSHHHHHH
T ss_pred EcCCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECeeccChhhCCHHHH-HHHHHHHHHHhCCCCcEEEecCCCCHHHHHH
Confidence 456665688898989999999886 57999998544442 222222 22333322 2234689998777665556543
Q ss_pred ---HHHHCCC-------CcccCCCHHHHHHHHHHHHH
Q psy12143 399 ---LIASAAM-------KILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 399 ---~L~~~Gi-------P~~~f~s~e~Av~al~~l~~ 425 (443)
..++.|. |+|.-.+.+..++-+.++++
T Consensus 98 la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~ 134 (303)
T 2wkj_A 98 LAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIID 134 (303)
T ss_dssp HHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHH
Confidence 4455562 66322466655555555544
No 114
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=60.23 E-value=75 Score=27.53 Aligned_cols=119 Identities=14% Similarity=0.107 Sum_probs=67.3
Q ss_pred CcEEEEEcc------hhHHHHHHHHHHHcCCCCCCe--eeecCCCCHHHHHHHHHHHHcC-----CCccEEEE--Ecc-C
Q psy12143 296 GSIGCLVNG------AGLAMATMDIIKLHGGEPANF--LDVGGGATAAQVKEAFKIITAD-----PKVCAIMV--NIF-G 359 (443)
Q Consensus 296 g~iaiitng------GG~g~la~D~~~~~G~~~~NP--vDl~g~~~~~~~~~al~~ll~d-----p~vd~vlv--~i~-~ 359 (443)
-||+|+..- -.+---+.|.+..+| .|. +.+.|.. .=| -+.+.+++. .++|+|+. .+. |
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G---~~i~v~~VPGaf-EiP--~aa~~la~~~~~~~~~yDavIaLG~VIrG 86 (157)
T 2i0f_A 13 PHLLIVEARFYDDLADALLDGAKAALDEAG---ATYDVVTVPGAL-EIP--ATISFALDGADNGGTEYDGFVALGTVIRG 86 (157)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHHHTT---CEEEEEEESSGG-GHH--HHHHHHHHHHHTTCCCCSEEEEEEEEECC
T ss_pred cEEEEEEEeCcHHHHHHHHHHHHHHHHHcC---CCeEEEECCcHH-HHH--HHHHHHHhhccccCCCCCEEEEeeeeecC
Confidence 467777543 244555778899988 232 2233333 223 344555555 78999997 222 3
Q ss_pred CCCC----hHHHHHHHHHHHHHcCCCCcEEEEe-CCCCHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHHHHH
Q psy12143 360 GIMR----CDVIAEGIIAAAQELSLKIPIICRL-QGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSSIV 427 (443)
Q Consensus 360 ~~~~----~~~~a~~i~~~~~~~~~~kpiv~~~-~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~~~ 427 (443)
+... |..++++|.+..-+ .++||.... ...+.+++.++- |.-. -+-=.+|+.+...++++.
T Consensus 87 ~T~Hfd~Va~~v~~gl~~vsl~--~~vPV~~GVLT~~~~eQA~~Ra---g~~~--~nkG~eaA~aAlem~~l~ 152 (157)
T 2i0f_A 87 ETYHFDIVSNESCRALTDLSVE--ESIAIGNGILTVENEEQAWVHA---RRED--KDKGGFAARAALTMIGLR 152 (157)
T ss_dssp SSSTTHHHHHHHHHHHHHHHHH--TTCCEEEEEEEESSHHHHHHHH---CTTT--TCHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHhh--cCCCEEEEEeCCCCHHHHHHHh---Cccc--cccHHHHHHHHHHHHHHH
Confidence 3433 34555666666555 689998644 333555555443 4221 223467777777777665
No 115
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=59.77 E-value=46 Score=31.31 Aligned_cols=81 Identities=22% Similarity=0.252 Sum_probs=51.8
Q ss_pred CcEEEEEcchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHH
Q psy12143 296 GSIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIIT-ADPKVCAIMVNIFGGIMRCDVIA 368 (443)
Q Consensus 296 g~iaiitngGG~g~------la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll-~dp~vd~vlv~i~~~~~~~~~~a 368 (443)
++|++++..-+... -..+++.++|.......-..++.+.+.-.++++.++ ..|.+++||+. .|.+|
T Consensus 182 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~-------nd~~A 254 (338)
T 3dbi_A 182 QEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVAS-------NDDMA 254 (338)
T ss_dssp CSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEEES-------SHHHH
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEEEEC-------ChHHH
Confidence 56999976533221 144677777765433233456667666555555555 67899999851 37888
Q ss_pred HHHHHHHHHcCCCCc
Q psy12143 369 EGIIAAAQELSLKIP 383 (443)
Q Consensus 369 ~~i~~~~~~~~~~kp 383 (443)
-++.+++++.+...|
T Consensus 255 ~g~~~al~~~G~~vP 269 (338)
T 3dbi_A 255 IGAMKALHERGVAVP 269 (338)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcCCCCC
Confidence 899999998765444
No 116
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=59.69 E-value=14 Score=35.84 Aligned_cols=68 Identities=13% Similarity=0.104 Sum_probs=40.5
Q ss_pred eecCCcEEEEEcchhHHH-------HHHHHHHHcCCCCC---Cee--eecCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q psy12143 292 IALDGSIGCLVNGAGLAM-------ATMDIIKLHGGEPA---NFL--DVGGGATAAQVKEAFKIITADPKVCAIMVNIFG 359 (443)
Q Consensus 292 ~~~~g~iaiitngGG~g~-------la~D~~~~~G~~~~---NPv--Dl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~ 359 (443)
.+.|.+||||+.|+|.+. .+...++..|.++. |-. +-.-..+.+.=.+-|..+++||+||+|+....|
T Consensus 9 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG 88 (327)
T 4h1h_A 9 LKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIGG 88 (327)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred CCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCCc
Confidence 344677999999987642 35677888884421 111 111122333323335666789999999975433
No 117
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=59.68 E-value=63 Score=31.04 Aligned_cols=103 Identities=11% Similarity=0.031 Sum_probs=62.8
Q ss_pred CCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHHH-HcCCCCcEEEEeCCCCHHHHH
Q psy12143 322 PANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAAQ-ELSLKIPIICRLQGTNVDDAK 397 (443)
Q Consensus 322 ~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~~-~~~~~kpiv~~~~g~~~~~~~ 397 (443)
+--|.|=-|+.+.+.+.+-++.+.+ .++|+++++-..|. ...++- ..+++... ..+.+.||++..+.++..+++
T Consensus 32 ~vTPf~~dg~iD~~~l~~lv~~li~-~Gv~Gi~v~GtTGE~~~Ls~~Er-~~v~~~~v~~~~grvpViaGvg~~~t~~ai 109 (315)
T 3na8_A 32 TITPFAADGGLDLPALGRSIERLID-GGVHAIAPLGSTGEGAYLSDPEW-DEVVDFTLKTVAHRVPTIVSVSDLTTAKTV 109 (315)
T ss_dssp CCCCBCTTSSBCHHHHHHHHHHHHH-TTCSEEECSSGGGTGGGSCHHHH-HHHHHHHHHHHTTSSCBEEECCCSSHHHHH
T ss_pred eeCcCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHH-HHHHHHHHHHhCCCCcEEEecCCCCHHHHH
Confidence 4567777788999999999999886 68999997544332 222222 22333322 223468999877766555654
Q ss_pred H---HHHHCCC-------CcccCCCHHHHHHHHHHHHHH
Q psy12143 398 V---LIASAAM-------KILPCDNLDEAARLAVKLSSI 426 (443)
Q Consensus 398 ~---~L~~~Gi-------P~~~f~s~e~Av~al~~l~~~ 426 (443)
+ ..++.|. |+|.-.+.+..++-+.++++.
T Consensus 110 ~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a 148 (315)
T 3na8_A 110 RRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEA 148 (315)
T ss_dssp HHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh
Confidence 3 5566673 664334666655555555443
No 118
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=59.67 E-value=55 Score=29.21 Aligned_cols=119 Identities=16% Similarity=0.109 Sum_probs=61.8
Q ss_pred CcEEEEEcchhHHHH--HHHHHHHcCCCC-------------CCe-eeecCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q psy12143 296 GSIGCLVNGAGLAMA--TMDIIKLHGGEP-------------ANF-LDVGGGATAAQVKEAFKIITADPKVCAIMVNIFG 359 (443)
Q Consensus 296 g~iaiitngGG~g~l--a~D~~~~~G~~~-------------~NP-vDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~ 359 (443)
..+.+||.||..|+| +++.+.+.|+.. .|| +|..-....-..++.+-.-.+ |+++ .++|
T Consensus 43 ~g~~lv~GGG~~GlM~a~~~ga~~~GG~viGv~p~~l~~~e~~~~~~~~~i~~~~~~~Rk~~m~~~s----da~I-alPG 117 (189)
T 3sbx_A 43 RGWTLVWGGGHVSAMGAVSSAARAHGGWTVGVIPKMLVHRELADHDADELVVTETMWERKQVMEDRA----NAFI-TLPG 117 (189)
T ss_dssp TTCEEEECCBCSHHHHHHHHHHHTTTCCEEEEEETTTTTTTTBCTTCSEEEEESSHHHHHHHHHHHC----SEEE-ECSC
T ss_pred CCCEEEECCCccCHHHHHHHHHHHcCCcEEEEcCchhhhcccCCCCCCeeEEcCCHHHHHHHHHHHC----CEEE-EeCC
Confidence 457888876533554 678888888542 222 111100111122333333233 5544 4778
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCcEEEEeC-CCCH--HHHHHHHHHCCCC-------cccCCCHHHHHHHH
Q psy12143 360 GIMRCDVIAEGIIAAAQELSLKIPIICRLQ-GTNV--DDAKVLIASAAMK-------ILPCDNLDEAARLA 420 (443)
Q Consensus 360 ~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~-g~~~--~~~~~~L~~~GiP-------~~~f~s~e~Av~al 420 (443)
+....+++.+.+.-..-.. ++|||+..-. |-.. .+..+.+.+.|.- +++.+|++++++.+
T Consensus 118 G~GTLdElfe~lt~~qlg~-~~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~~ee~~~~l 187 (189)
T 3sbx_A 118 GVGTLDELLDVWTEGYLGM-HDKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVDNLDDALQAC 187 (189)
T ss_dssp CHHHHHHHHHHHHHHHTTS-CCCCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEESSHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhcc-cCCCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEeCCHHHHHHHh
Confidence 7555677777664332222 5799987533 3321 1223455566631 23478999988765
No 119
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=59.31 E-value=59 Score=31.21 Aligned_cols=103 Identities=10% Similarity=0.013 Sum_probs=64.1
Q ss_pred CCCeeee-cCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHH-HHHcCCCCcEEEEeCCCCHHHH
Q psy12143 322 PANFLDV-GGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAA-AQELSLKIPIICRLQGTNVDDA 396 (443)
Q Consensus 322 ~~NPvDl-~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~-~~~~~~~kpiv~~~~g~~~~~~ 396 (443)
+--|+|= -|..+.+.+.+-++.+.+ .++|+++++-..|. .+.++- ..+++. .+..+.+.||++..+. +..++
T Consensus 19 ~vTPf~~~dg~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~eEr-~~v~~~~v~~~~grvpViaGvg~-~t~~a 95 (316)
T 3e96_A 19 PITPFRKSDGSIDWHHYKETVDRIVD-NGIDVIVPCGNTSEFYALSLEEA-KEEVRRTVEYVHGRALVVAGIGY-ATSTA 95 (316)
T ss_dssp CCCCBCTTTCCBCHHHHHHHHHHHHT-TTCCEECTTSGGGTGGGSCHHHH-HHHHHHHHHHHTTSSEEEEEECS-SHHHH
T ss_pred eeCCccCCCCCCCHHHHHHHHHHHHH-cCCCEEEeCccccCcccCCHHHH-HHHHHHHHHHhCCCCcEEEEeCc-CHHHH
Confidence 4567776 788999999999999885 68999997543332 222222 222332 2222346899987654 55555
Q ss_pred HH---HHHHCCC-------CcccCCCHHHHHHHHHHHHHHH
Q psy12143 397 KV---LIASAAM-------KILPCDNLDEAARLAVKLSSIV 427 (443)
Q Consensus 397 ~~---~L~~~Gi-------P~~~f~s~e~Av~al~~l~~~~ 427 (443)
++ ..++.|. |+|...+.+..++-+.++++..
T Consensus 96 i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 136 (316)
T 3e96_A 96 IELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEAL 136 (316)
T ss_dssp HHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC
Confidence 43 4555563 7754557777777766666554
No 120
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=58.55 E-value=79 Score=28.41 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=60.4
Q ss_pred cEEEEEcch--hHHHHHHHHHHHcCCCC-------------CCe-eeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCC
Q psy12143 297 SIGCLVNGA--GLAMATMDIIKLHGGEP-------------ANF-LDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGG 360 (443)
Q Consensus 297 ~iaiitngG--G~g~la~D~~~~~G~~~-------------~NP-vDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~ 360 (443)
.+.++|.|| |+--.++|.+.+.|+.. .|| +|..-....-..++.+-.-.+ |++ |.++|+
T Consensus 53 g~~lV~GGG~~GlM~a~~~gA~~~GG~viGv~p~~l~~~e~~~~~~~~~i~~~~~~~Rk~~m~~~s----da~-IalPGG 127 (199)
T 3qua_A 53 GWTLVSGGGNVSAMGAVAQAARAKGGHTVGVIPKALVHRELADVDAAELIVTDTMRERKREMEHRS----DAF-IALPGG 127 (199)
T ss_dssp TCEEEECCBCSHHHHHHHHHHHHTTCCEEEEEEGGGTTTTTBCTTSSEEEEESSHHHHHHHHHHHC----SEE-EECSCC
T ss_pred CCEEEECCCccCHHHHHHHHHHHcCCcEEEEeCchhhhccccCCCCCeeEEcCCHHHHHHHHHHhc----Ccc-EEeCCC
Confidence 467887765 44445778888888542 121 111000011123343333333 464 447887
Q ss_pred CCChHHHHHHHHHHHHHcCCCCcEEEEeC-CCCHHHHH---HHHHHCCC-------CcccCCCHHHHHHHH
Q psy12143 361 IMRCDVIAEGIIAAAQELSLKIPIICRLQ-GTNVDDAK---VLIASAAM-------KILPCDNLDEAARLA 420 (443)
Q Consensus 361 ~~~~~~~a~~i~~~~~~~~~~kpiv~~~~-g~~~~~~~---~~L~~~Gi-------P~~~f~s~e~Av~al 420 (443)
....+++.+.+.-..-.. ++|||+..-. |- ...-. +.+.+.|. -+++.+|++++++.+
T Consensus 128 ~GTldEl~e~lt~~qlg~-~~kPvvlln~~gf-w~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~~~e~~~~l 196 (199)
T 3qua_A 128 IGTLEEFFEAWTAGYLGM-HDKPLILLDPFGH-YDGLLTWLRGLVPTGYVSQRAMDSLVVVDNVEAALEAC 196 (199)
T ss_dssp HHHHHHHHHHHHHHHTTS-CCCCEEEECTTST-THHHHHHHHHTTTTTSSCHHHHHTSEEESSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcc-CCCCEEEEcCCcc-chHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHHHH
Confidence 555677777664322121 4799986543 33 22222 33444452 123378999998876
No 121
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=57.95 E-value=1.1e+02 Score=29.03 Aligned_cols=102 Identities=6% Similarity=0.008 Sum_probs=63.1
Q ss_pred CCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHHHH-cCCCCcEEEEeCCCCHHHHH
Q psy12143 322 PANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAAQE-LSLKIPIICRLQGTNVDDAK 397 (443)
Q Consensus 322 ~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~~~-~~~~kpiv~~~~g~~~~~~~ 397 (443)
.--|+|=-|..+.+.+.+-++.+.+ .++|+++++-..|. .+.++- ..+++...+ .+.+.||++..++++..+++
T Consensus 22 lvTPf~~dg~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~~Er-~~v~~~~~~~~~gr~pviaGvg~~~t~~ai 99 (307)
T 3s5o_A 22 VTTPFTATAEVDYGKLEENLHKLGT-FPFRGFVVQGSNGEFPFLTSSER-LEVVSRVRQAMPKNRLLLAGSGCESTQATV 99 (307)
T ss_dssp CCCCBCTTSCBCHHHHHHHHHHHTT-SCCSEEEESSGGGTGGGSCHHHH-HHHHHHHHHTSCTTSEEEEECCCSSHHHHH
T ss_pred eEccCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccccchhhCCHHHH-HHHHHHHHHHcCCCCcEEEecCCCCHHHHH
Confidence 4567777788998989999998874 57999998544432 222332 334444333 33468988877766555654
Q ss_pred ---HHHHHCCC-------CcccC--CCHHHHHHHHHHHHH
Q psy12143 398 ---VLIASAAM-------KILPC--DNLDEAARLAVKLSS 425 (443)
Q Consensus 398 ---~~L~~~Gi-------P~~~f--~s~e~Av~al~~l~~ 425 (443)
+..++.|. |+|.- .+.+..++-+.++++
T Consensus 100 ~la~~A~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~ 139 (307)
T 3s5o_A 100 EMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVAD 139 (307)
T ss_dssp HHHHHHHHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHh
Confidence 35566673 55211 366666666655544
No 122
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=57.78 E-value=84 Score=30.01 Aligned_cols=103 Identities=8% Similarity=-0.011 Sum_probs=62.6
Q ss_pred CCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHH-HHcCCCCcEEEEeCCCCHHHHH
Q psy12143 322 PANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAA-QELSLKIPIICRLQGTNVDDAK 397 (443)
Q Consensus 322 ~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~-~~~~~~kpiv~~~~g~~~~~~~ 397 (443)
.--|.|=-|+.+.+.+.+-++.+.+ .++|+++++-..|. .+.++- ..+++.. +..+.+.||++..++++..+++
T Consensus 16 ~vTPf~~dg~iD~~~l~~lv~~li~-~Gv~gl~v~GtTGE~~~Ls~~Er-~~v~~~~~~~~~grvpviaGvg~~~t~~ai 93 (309)
T 3fkr_A 16 VPTTFADTGDLDLASQKRAVDFMID-AGSDGLCILANFSEQFAITDDER-DVLTRTILEHVAGRVPVIVTTSHYSTQVCA 93 (309)
T ss_dssp CCCCBCTTSSBCHHHHHHHHHHHHH-TTCSCEEESSGGGTGGGSCHHHH-HHHHHHHHHHHTTSSCEEEECCCSSHHHHH
T ss_pred eeCCCCcCCCcCHHHHHHHHHHHHH-cCCCEEEECccccCcccCCHHHH-HHHHHHHHHHhCCCCcEEEecCCchHHHHH
Confidence 3467776788999999999999886 68999998544332 222222 2223332 2223468999887766656654
Q ss_pred H---HHHHCCC-------Ccc---cCCCHHHHHHHHHHHHHH
Q psy12143 398 V---LIASAAM-------KIL---PCDNLDEAARLAVKLSSI 426 (443)
Q Consensus 398 ~---~L~~~Gi-------P~~---~f~s~e~Av~al~~l~~~ 426 (443)
+ ..++.|. |+| .-.+.+..++-+.++++.
T Consensus 94 ~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a 135 (309)
T 3fkr_A 94 ARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDA 135 (309)
T ss_dssp HHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHh
Confidence 3 5556662 653 124666666655555543
No 123
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=57.59 E-value=82 Score=30.19 Aligned_cols=102 Identities=11% Similarity=0.056 Sum_probs=61.7
Q ss_pred CCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHH-HHHcCCCCcEEEEeCCCCHHHHH
Q psy12143 322 PANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAA-AQELSLKIPIICRLQGTNVDDAK 397 (443)
Q Consensus 322 ~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~-~~~~~~~kpiv~~~~g~~~~~~~ 397 (443)
+--|+|=-|+.+.+.+.+-++.+.+ .++|+++++-..|. .+.++- ..+++. .+..+.+.||++..++++..+++
T Consensus 31 ~vTPf~~dg~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~~Er-~~v~~~~v~~~~grvpViaGvg~~st~eai 108 (314)
T 3qze_A 31 LVTPFDAQGRLDWDSLAKLVDFHLQ-EGTNAIVAVGTTGESATLDVEEH-IQVIRRVVDQVKGRIPVIAGTGANSTREAV 108 (314)
T ss_dssp CCCCBCTTSCBCHHHHHHHHHHHHH-HTCCEEEESSGGGTGGGCCHHHH-HHHHHHHHHHHTTSSCEEEECCCSSHHHHH
T ss_pred eECCCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHH-HHHHHHHHHHhCCCCcEEEeCCCcCHHHHH
Confidence 3567777788999999999998875 57999998544332 222222 222222 22223468999877766556654
Q ss_pred ---HHHHHCCC-------CcccCCCHHHHHHHHHHHHH
Q psy12143 398 ---VLIASAAM-------KILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 398 ---~~L~~~Gi-------P~~~f~s~e~Av~al~~l~~ 425 (443)
+..++.|. |+|.-.+.+..++-+.++++
T Consensus 109 ~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~ 146 (314)
T 3qze_A 109 ALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAE 146 (314)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence 35556673 66433466655555555444
No 124
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=57.32 E-value=16 Score=37.55 Aligned_cols=69 Identities=13% Similarity=0.155 Sum_probs=46.9
Q ss_pred CCCCeeecCCHHHHHHHHHHcCCCeEEEEEeecCCCCCccccccCccCcEEEe--CCHHHHHHHHHHHhhchhhhhhcCC
Q psy12143 51 PVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMV--DTPEEAEEVAGKMIGDYLITKQTGE 128 (443)
Q Consensus 51 pv~~~~~v~s~~ea~~~a~~lg~~PvVlK~~~~~~gk~k~~~~~~~~GGV~l~--~s~ee~~~a~~~l~~~~~~~~~~~~ 128 (443)
|..++..+.+.++...+.+.+. .+|+||....+ | .||.+. .|.++..+..+++...
T Consensus 342 ~~VpT~~c~~~~~~~~vl~~l~--~lViKp~~g~g--g---------~gv~iG~~~s~~e~~~~~~~i~~~--------- 399 (474)
T 3n6x_A 342 SNVPTYQLSKADDLKYVLDNLA--ELVVKEVQGSG--G---------YGMLVGPAASKQELEDFRQRILAN--------- 399 (474)
T ss_dssp EECCCEETTSHHHHHHHHHSGG--GEEEEECCCE----------------EEGGGCCHHHHHHHHHHHHHS---------
T ss_pred cCCCceecCCHHHHHHHHhchh--heEEEecCCCC--C---------CceEECCcCCHHHHHHHHHHHHhC---------
Confidence 4456677788888888888876 69999964332 2 267785 5888888877777542
Q ss_pred CCcccCeEEEEeeeCCC
Q psy12143 129 KGRICNAVMVTERKYPR 145 (443)
Q Consensus 129 ~g~~~~~vlVE~~v~~g 145 (443)
...++.|++++..
T Consensus 400 ----p~~yIaQe~v~ls 412 (474)
T 3n6x_A 400 ----PANYIAQPTLALS 412 (474)
T ss_dssp ----GGGEEEEECCCCC
T ss_pred ----CCCEEEeeccCCc
Confidence 2469999999753
No 125
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=56.94 E-value=32 Score=30.63 Aligned_cols=122 Identities=18% Similarity=0.080 Sum_probs=63.0
Q ss_pred CcEEEEEcch--hHHHHHHHHHHHcCCCC-------------CCe-eeecCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q psy12143 296 GSIGCLVNGA--GLAMATMDIIKLHGGEP-------------ANF-LDVGGGATAAQVKEAFKIITADPKVCAIMVNIFG 359 (443)
Q Consensus 296 g~iaiitngG--G~g~la~D~~~~~G~~~-------------~NP-vDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~ 359 (443)
..+.++|.|| |.--.+++.+.+.|+.. .|+ ++-.-....-+.++.+=.-++ |++++ ++|
T Consensus 32 ~g~~lV~GGg~~GiM~aa~~gA~~~gG~~iGv~p~~l~~~e~~~~~~~~~~~~~~~~~Rk~~~~~~s----da~Iv-lPG 106 (191)
T 1t35_A 32 QGIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPSGLFSGEVVHQNLTELIEVNGMHERKAKMSELA----DGFIS-MPG 106 (191)
T ss_dssp TTCEEEECCCCSHHHHHHHHHHHTTTCCEEEEEETTCCHHHHTTCCCSEEEEESHHHHHHHHHHHHC----SEEEE-CSC
T ss_pred CCCEEEECCCcccHHHHHHHHHHHcCCeEEEEeCchhcccccccCCCCccccCCCHHHHHHHHHHHC----CEEEE-eCC
Confidence 3577888776 44444677787788642 122 111000111123343333333 56555 777
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCcEEEEeC-CCCH--HHHHHHHHHCCC-------CcccCCCHHHHHHHHHHH
Q psy12143 360 GIMRCDVIAEGIIAAAQELSLKIPIICRLQ-GTNV--DDAKVLIASAAM-------KILPCDNLDEAARLAVKL 423 (443)
Q Consensus 360 ~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~-g~~~--~~~~~~L~~~Gi-------P~~~f~s~e~Av~al~~l 423 (443)
+....+++.+.+.-..-. .++|||+..-. +-.. .+..+.+.+.|. -+++.+||+++++.+..+
T Consensus 107 G~GTl~El~e~lt~~q~g-~~~kPvvll~~~g~~~~l~~~l~~~~~~Gfi~~~~~~~~~~~~~~~e~~~~l~~~ 179 (191)
T 1t35_A 107 GFGTYEELFEVLCWAQIG-IHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSSSRPDELIEQMQNY 179 (191)
T ss_dssp CHHHHHHHHHHHHTTSCS-SCCCCEEEECGGGTTHHHHHHHHHHHHTTSSCTTHHHHEEEESSHHHHHHHHHTC
T ss_pred CccHHHHHHHHHHHHHhC-CCCCCEEEecCCcccchHHHHHHHHHHCCCCCHHHcCeEEEeCCHHHHHHHHHHh
Confidence 754456666655321111 14699987532 3221 222355666662 123379999999987653
No 126
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=56.90 E-value=1e+02 Score=29.58 Aligned_cols=100 Identities=10% Similarity=0.098 Sum_probs=60.4
Q ss_pred CCeee-ecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHH-HHcCCCCcEEEEeCCCCHHHHH
Q psy12143 323 ANFLD-VGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAA-QELSLKIPIICRLQGTNVDDAK 397 (443)
Q Consensus 323 ~NPvD-l~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~-~~~~~~kpiv~~~~g~~~~~~~ 397 (443)
--|+| =-|+.+.+.+.+-++.+.+ .++|+++++-..|. ...++- ..+++.. +..+.+.||++..++++..+++
T Consensus 19 vTPf~~~dg~iD~~~l~~lv~~li~-~Gv~gl~v~GtTGE~~~Ls~~Er-~~v~~~~~~~~~grvpviaGvg~~~t~~ai 96 (318)
T 3qfe_A 19 VTFFDSKTDTLDLASQERYYAYLAR-SGLTGLVILGTNAEAFLLTREER-AQLIATARKAVGPDFPIMAGVGAHSTRQVL 96 (318)
T ss_dssp CCCEETTTTEECHHHHHHHHHHHHT-TTCSEEEESSGGGTGGGSCHHHH-HHHHHHHHHHHCTTSCEEEECCCSSHHHHH
T ss_pred eCCccCCCCCCCHHHHHHHHHHHHH-cCCCEEEeCccccChhhCCHHHH-HHHHHHHHHHhCCCCcEEEeCCCCCHHHHH
Confidence 56777 6788898999999999886 58999998544432 222222 2233332 2223468999877766666654
Q ss_pred H---HHHHCCC-------CcccCC---CHHHHHHHHHHHHH
Q psy12143 398 V---LIASAAM-------KILPCD---NLDEAARLAVKLSS 425 (443)
Q Consensus 398 ~---~L~~~Gi-------P~~~f~---s~e~Av~al~~l~~ 425 (443)
+ ..++.|. |.| |. +.+..++-+.++++
T Consensus 97 ~la~~a~~~Gadavlv~~P~y-~~kp~~~~~l~~~f~~ia~ 136 (318)
T 3qfe_A 97 EHINDASVAGANYVLVLPPAY-FGKATTPPVIKSFFDDVSC 136 (318)
T ss_dssp HHHHHHHHHTCSEEEECCCCC----CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCcc-cCCCCCHHHHHHHHHHHHh
Confidence 3 4555663 532 43 56666665555554
No 127
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=56.87 E-value=1.1e+02 Score=28.83 Aligned_cols=101 Identities=10% Similarity=0.046 Sum_probs=60.2
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHH-HHcCCCCcEEEEeCCCCHHHHHH
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAA-QELSLKIPIICRLQGTNVDDAKV 398 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~-~~~~~~kpiv~~~~g~~~~~~~~ 398 (443)
--|.|=-|..+.+.+.+-++.+.+ .++|+++++-..|. .+.++- ..+++.. +..+.+.||++..++++..++++
T Consensus 10 vTPf~~dg~iD~~~l~~lv~~li~-~Gv~gl~~~GttGE~~~Ls~~Er-~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~ 87 (291)
T 3tak_A 10 VTPMLKDGGVDWKSLEKLVEWHIE-QGTNSIVAVGTTGEASTLSMEEH-TQVIKEIIRVANKRIPIIAGTGANSTREAIE 87 (291)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHH-HTCCEEEESSTTTTGGGSCHHHH-HHHHHHHHHHHTTSSCEEEECCCSSHHHHHH
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHH-CCCCEEEECccccccccCCHHHH-HHHHHHHHHHhCCCCeEEEeCCCCCHHHHHH
Confidence 356666688898989999998885 68999998544442 222322 2233332 22234689998777665566543
Q ss_pred ---HHHHCCC-------CcccCCCHHHHHHHHHHHHH
Q psy12143 399 ---LIASAAM-------KILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 399 ---~L~~~Gi-------P~~~f~s~e~Av~al~~l~~ 425 (443)
..++.|. |+|.-.+.+..++-+.++++
T Consensus 88 la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~ 124 (291)
T 3tak_A 88 LTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAE 124 (291)
T ss_dssp HHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence 5555663 66433466555554444443
No 128
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=56.31 E-value=43 Score=30.81 Aligned_cols=121 Identities=13% Similarity=0.140 Sum_probs=66.7
Q ss_pred CcEEEEEcchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHH
Q psy12143 296 GSIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIIT-ADPKVCAIMVNIFGGIMRCDVIA 368 (443)
Q Consensus 296 g~iaiitngGG~g~------la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll-~dp~vd~vlv~i~~~~~~~~~~a 368 (443)
++|++++...+... -..+++..+|.......-..++.+.+...++++.++ +.|.+++||+. .|.+|
T Consensus 127 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------nd~~A 199 (294)
T 3qk7_A 127 QRIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAIITD-------CNMLG 199 (294)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSEEEES-------SHHHH
T ss_pred ceEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcEEEEC-------CHHHH
Confidence 46999976543221 134567777755432222345666665444444444 56899999851 37889
Q ss_pred HHHHHHHHHcCCCCc--E-EEEeCCCCHHHHHHHHHHCCCCcccCCC-HHHHHHHHHHHHHHH
Q psy12143 369 EGIIAAAQELSLKIP--I-ICRLQGTNVDDAKVLIASAAMKILPCDN-LDEAARLAVKLSSIV 427 (443)
Q Consensus 369 ~~i~~~~~~~~~~kp--i-v~~~~g~~~~~~~~~L~~~GiP~~~f~s-~e~Av~al~~l~~~~ 427 (443)
-++.+++++.+...| | |+.+.+... ..+...++-++..+. .+-+-.++..|.+++
T Consensus 200 ~g~~~al~~~G~~vP~di~vig~D~~~~----~~~~~p~lttv~~~~~~~~g~~av~~L~~~i 258 (294)
T 3qk7_A 200 DGVASALDKAGLLGGEGISLIAYDGLPD----DSLLDIAVTPIVQNTRTSVGKQIASMICDLL 258 (294)
T ss_dssp HHHHHHHHHTTCSSTTSCEEEEETCSCT----TCSCCSCCEEEECCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCceEEEeecCccH----HhhcCCCceeEecCcHHHHHHHHHHHHHHHh
Confidence 999999998765444 3 333433321 111122333333444 355555666666665
No 129
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=56.25 E-value=38 Score=29.46 Aligned_cols=87 Identities=16% Similarity=0.295 Sum_probs=53.7
Q ss_pred cEEEEEcc------hhHHHHHHHHHHHcCCCCCCe--eeecCCCCHHHHHHHHHHHHcCCCccEEEE--Ecc-CCCCC--
Q psy12143 297 SIGCLVNG------AGLAMATMDIIKLHGGEPANF--LDVGGGATAAQVKEAFKIITADPKVCAIMV--NIF-GGIMR-- 363 (443)
Q Consensus 297 ~iaiitng------GG~g~la~D~~~~~G~~~~NP--vDl~g~~~~~~~~~al~~ll~dp~vd~vlv--~i~-~~~~~-- 363 (443)
||+|+... ..+---+.|.+..+|.+..|. +.+-|... +--+.+.+++..++|+|+. .+. |+...
T Consensus 12 ri~IV~arfn~~I~~~Ll~gA~~~l~~~gv~~~~i~v~~VPGafE---iP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd 88 (158)
T 1di0_A 12 KIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYE---IPLHAKTLARTGRYAAIVGAAFVIDGGIYDHD 88 (158)
T ss_dssp EEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGG---HHHHHHHHHHTSCCSEEEEEEECCCCSSBCCH
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHH---HHHHHHHHHhcCCCCEEEEeeccccCCCcHHH
Confidence 57777532 245555778999999765443 23334332 3345677778889999997 233 33333
Q ss_pred --hHHHHHHHHHHHHHcCCCCcEEEEe
Q psy12143 364 --CDVIAEGIIAAAQELSLKIPIICRL 388 (443)
Q Consensus 364 --~~~~a~~i~~~~~~~~~~kpiv~~~ 388 (443)
|..++++|.+..-+ +++||....
T Consensus 89 ~Va~~vs~Gl~~v~L~--~~vPV~~GV 113 (158)
T 1di0_A 89 FVATAVINGMMQVQLE--TEVPVLSVV 113 (158)
T ss_dssp HHHHHHHHHHHHHHHH--HCCCEEEEE
T ss_pred HHHHHHHHHHHHHHhh--cCCCEEEEe
Confidence 45556777776555 579998653
No 130
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=56.20 E-value=14 Score=33.42 Aligned_cols=114 Identities=15% Similarity=0.082 Sum_probs=57.7
Q ss_pred CcEEEEEcchhHHHH--HHHHHHHcCCC---------CCCee-eecCC-CCHHHHHHHHHHHHcCCCccEEEEEccCCCC
Q psy12143 296 GSIGCLVNGAGLAMA--TMDIIKLHGGE---------PANFL-DVGGG-ATAAQVKEAFKIITADPKVCAIMVNIFGGIM 362 (443)
Q Consensus 296 g~iaiitngGG~g~l--a~D~~~~~G~~---------~~NPv-Dl~g~-~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~ 362 (443)
..+.||| ||+.|+| +++.+.+.|+. ..|+. |+.-. ...-+-++.+=.-+ -|++++ ++++..
T Consensus 57 ~G~~vVs-Gg~~GiM~aa~~gAl~~GG~~iGVlP~e~~~~~~~~~~~~~~~~f~~Rk~~m~~~----sda~Iv-lpGG~G 130 (195)
T 1rcu_A 57 KGYLVFN-GGRDGVMELVSQGVREAGGTVVGILPDEEAGNPYLSVAVKTGLDFQMRSFVLLRN----ADVVVS-IGGEIG 130 (195)
T ss_dssp TTCEEEE-CCSSHHHHHHHHHHHHTTCCEEEEESTTCCCCTTCSEEEECCCCHHHHHHHHHTT----CSEEEE-ESCCHH
T ss_pred CCCEEEe-CCHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCcceeeecCCCHHHHHHHHHHh----CCEEEE-ecCCCc
Confidence 4588888 6888887 56777777753 12332 21100 01112233322222 356665 566633
Q ss_pred ChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCC-C-------CcccCCCHHHHHHHHHH
Q psy12143 363 RCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAA-M-------KILPCDNLDEAARLAVK 422 (443)
Q Consensus 363 ~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~G-i-------P~~~f~s~e~Av~al~~ 422 (443)
..+++.+.+ . .+|||++.-.......-++.+.+.| . -+.+.+|++++++.+..
T Consensus 131 TL~E~~eal----~---~~kPV~lln~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~ee~~~~l~~ 191 (195)
T 1rcu_A 131 TAIEILGAY----A---LGKPVILLRGTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEEAVQIIEQ 191 (195)
T ss_dssp HHHHHHHHH----H---TTCCEEEETTSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSHHHHHHHHHT
T ss_pred HHHHHHHHH----h---cCCCEEEECCCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCHHHHHHHHHH
Confidence 344444432 2 4799987633221222233333344 1 12348899999988754
No 131
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}
Probab=55.79 E-value=33 Score=34.96 Aligned_cols=127 Identities=12% Similarity=0.025 Sum_probs=65.7
Q ss_pred CcEEEEEcchhHHHH---HHHHHHH------cCCC-------------CCCee-eecCCCCHHHHHHHHHHHHcCCCccE
Q psy12143 296 GSIGCLVNGAGLAMA---TMDIIKL------HGGE-------------PANFL-DVGGGATAAQVKEAFKIITADPKVCA 352 (443)
Q Consensus 296 g~iaiitngGG~g~l---a~D~~~~------~G~~-------------~~NPv-Dl~g~~~~~~~~~al~~ll~dp~vd~ 352 (443)
..+.++|.||+ |+| .+++... .||. ..||. |..--...-.-++.+=.-.+ |+
T Consensus 174 ~G~~LVtGGG~-GlMEaa~aGA~~a~s~qr~~GG~vIGIiP~~L~~~E~~N~~vtelIiv~~m~eRK~~mv~~S----DA 248 (460)
T 3bq9_A 174 RGLNICTGCGP-GAMKGPMKGATIGHAKQRVEGGRYLGLTEPGIIAAEPPNPIVNELVILPDIEKRLEAFVRCA----HG 248 (460)
T ss_dssp TTCEEEECCSS-GGGTHHHHHHHHHHHHTTCSSCCEEEEECTTTTTTSCCCTTCSEEEECSSHHHHHHHHHHHC----SE
T ss_pred CCCEEEeCCcH-HHhhHHHhhHHhhcccccCCCCEEEEEeChhhhhhhhcCCCCCeEEEECCHHHHHHHHHHhC----CE
Confidence 45888888876 887 6777777 4643 23442 21101111112333322233 46
Q ss_pred EEEEccCCCCChHHHHHHHHHHHHHc--CCCCcEEEEeC-C-CC-HHHHHHHHHH-------CCCCcccCCCHHHHHHHH
Q psy12143 353 IMVNIFGGIMRCDVIAEGIIAAAQEL--SLKIPIICRLQ-G-TN-VDDAKVLIAS-------AAMKILPCDNLDEAARLA 420 (443)
Q Consensus 353 vlv~i~~~~~~~~~~a~~i~~~~~~~--~~~kpiv~~~~-g-~~-~~~~~~~L~~-------~GiP~~~f~s~e~Av~al 420 (443)
++ .++||....+++.+.+.-..-.. ..+|||+..-. + .+ ...-...+.. ..+- ++.+||+++++.+
T Consensus 249 fI-aLPGG~GTLeELfEaLT~~QLg~~k~~~kPVVLlg~~n~~gywd~Ll~~l~~~l~~~~~~~~i-iv~ddpeEal~~l 326 (460)
T 3bq9_A 249 IV-IFPGGAGTAEELLYLLGILMHPDNQRQSLPVILTGPASSRDYFEALDEFIGATIGDEARQLYK-IIIDDPAAVAQHM 326 (460)
T ss_dssp EE-ECSCSHHHHHHHHHHHHHHTSGGGTTCCCCEEEEECGGGHHHHHHHHHHHHHHTCTTGGGGCE-EEESCHHHHHHHH
T ss_pred EE-EcCCCcchHHHHHHHHHHHhhccccCCCCCEEEEecCCccchhhHHHHHHHHHhcchhhcCcE-EEeCCHHHHHHHH
Confidence 44 47888555677777665432111 14799986531 1 11 1111222221 1221 2369999999999
Q ss_pred HHHHHHHhH
Q psy12143 421 VKLSSIVGL 429 (443)
Q Consensus 421 ~~l~~~~~~ 429 (443)
......+..
T Consensus 327 ~~~~~~v~~ 335 (460)
T 3bq9_A 327 HAGMAAVKQ 335 (460)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 877666633
No 132
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=55.43 E-value=46 Score=29.19 Aligned_cols=124 Identities=15% Similarity=0.213 Sum_probs=70.7
Q ss_pred CcEEEEEcc------hhHHHHHHHHHHHcCCCCCCee--eecCCCCHHHHHHHHHHHHc-----CCCccEEEE--Ecc-C
Q psy12143 296 GSIGCLVNG------AGLAMATMDIIKLHGGEPANFL--DVGGGATAAQVKEAFKIITA-----DPKVCAIMV--NIF-G 359 (443)
Q Consensus 296 g~iaiitng------GG~g~la~D~~~~~G~~~~NPv--Dl~g~~~~~~~~~al~~ll~-----dp~vd~vlv--~i~-~ 359 (443)
-||+|+..- -.+---+.|.+..+|.+..|.. .+-|... =| -+.+.+++ ...+|+|+. .+. |
T Consensus 17 ~ri~IV~arfn~~I~~~Ll~gA~~~L~~~Gv~~~~i~v~~VPGafE-iP--~aak~la~~~~~~~~~yDavIaLG~VIrG 93 (168)
T 1ejb_A 17 IRVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGSYE-LP--WGTKRFVDRQAKLGKPLDVVIPIGVLIKG 93 (168)
T ss_dssp CCEEEEECCTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEECSSGGG-HH--HHHHHHHHHHHHTTCCCSEEEEEEEEECC
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHH-HH--HHHHHHHhhccccCCCcCEEEEecccccC
Confidence 468888643 2455567899999998766654 3444333 33 33455554 678999997 232 3
Q ss_pred CCCC----hHHHHHHHHHHHHHcCCCCcEEEE-eCCCCHHHHHHHHHHCCCCcc-cC-CCHHHHHHHHHHHHHHH
Q psy12143 360 GIMR----CDVIAEGIIAAAQELSLKIPIICR-LQGTNVDDAKVLIASAAMKIL-PC-DNLDEAARLAVKLSSIV 427 (443)
Q Consensus 360 ~~~~----~~~~a~~i~~~~~~~~~~kpiv~~-~~g~~~~~~~~~L~~~GiP~~-~f-~s~e~Av~al~~l~~~~ 427 (443)
.... |..++++|.+..-+ .++||+.. +...+.+++++ ..|..-- .. +==.+|+.+...|+++.
T Consensus 94 ~T~Hfd~Va~~vs~Gl~~vsL~--~~vPV~~GVLT~~~~eQA~~---Rag~~~~~~~~nkG~eaA~aAlem~~l~ 163 (168)
T 1ejb_A 94 STMHFEYISDSTTHALMNLQEK--VDMPVIFGLLTCMTEEQALA---RAGIDEAHSMHNHGEDWGAAAVEMAVKF 163 (168)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHH--HTSCBCCEEEEESSHHHHHH---HBTCSTTCCSCBHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHhh--cCCCEEEEEecCCCHHHHHH---hcCccccccccchHHHHHHHHHHHHHHh
Confidence 3333 34556677776555 57999854 44445555543 3454210 01 22456666666776554
No 133
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=55.34 E-value=84 Score=30.94 Aligned_cols=113 Identities=12% Similarity=-0.035 Sum_probs=65.6
Q ss_pred HHHHHHHHcCC--CCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHHHHcCCCCcE
Q psy12143 310 ATMDIIKLHGG--EPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAAQELSLKIPI 384 (443)
Q Consensus 310 la~D~~~~~G~--~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~~~~~~~kpi 384 (443)
++.|.+...|. ..--|.|=-|+.+.+.+.+-++.+.+ .++|+++++-..|. ...++-.+.+..+.+..+.+.||
T Consensus 53 ~~~~~~~~~Gi~~alvTPF~~dg~ID~~al~~lv~~li~-~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpV 131 (360)
T 4dpp_A 53 TNTDDIKALRVITAIKTPYLPDGRFDLEAYDDLVNIQIQ-NGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKV 131 (360)
T ss_dssp -CHHHHHTCCEEEECCCCBCTTSSBCHHHHHHHHHHHHH-TTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEE
T ss_pred cChhhcccCCeEEEEeCcCCCCCCcCHHHHHHHHHHHHH-cCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeE
Confidence 34444454442 34678877789999999999999885 68999998544442 22222222222222222346899
Q ss_pred EEEeCCCCHHHHH---HHHHHCCC-------CcccCCCHHHHHHHHHHH
Q psy12143 385 ICRLQGTNVDDAK---VLIASAAM-------KILPCDNLDEAARLAVKL 423 (443)
Q Consensus 385 v~~~~g~~~~~~~---~~L~~~Gi-------P~~~f~s~e~Av~al~~l 423 (443)
++..++++..+++ +..++.|. |+|.-.+.+..++-+.++
T Consensus 132 iaGvg~~st~eai~la~~A~~~Gadavlvv~PyY~k~sq~gl~~hf~~I 180 (360)
T 4dpp_A 132 IGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSIEGLIAHFQSV 180 (360)
T ss_dssp EEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHTT
T ss_pred EEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHH
Confidence 9877766556654 35556674 664334555544444443
No 134
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=55.17 E-value=1.2e+02 Score=29.37 Aligned_cols=103 Identities=16% Similarity=0.079 Sum_probs=60.8
Q ss_pred CCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHHH-HcCCCCcEEEEeCCCCHHHH
Q psy12143 321 EPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAAQ-ELSLKIPIICRLQGTNVDDA 396 (443)
Q Consensus 321 ~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~~-~~~~~kpiv~~~~g~~~~~~ 396 (443)
.+--|.|=-|..+.+.+.+-++.+.+ .++|+|+++-..|. .+.++- ..+++... ..+.+.||++..++.+..++
T Consensus 41 a~vTPF~~dg~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~eEr-~~vi~~~ve~~~grvpViaGvg~~st~ea 118 (332)
T 2r8w_A 41 FPITPADEAGRVDIEAFSALIARLDA-AEVDSVGILGSTGIYMYLTREER-RRAIEAAATILRGRRTLMAGIGALRTDEA 118 (332)
T ss_dssp CCCCCBCTTCCBCHHHHHHHHHHHHH-HTCSEEEESSTTTTGGGSCHHHH-HHHHHHHHHHHTTSSEEEEEECCSSHHHH
T ss_pred EeeCCcCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHH-HHHHHHHHHHhCCCCcEEEecCCCCHHHH
Confidence 34567766788999999999998886 47999998544442 222222 22333322 22346899988777665665
Q ss_pred HH---HHHHCCC-------CcccCCCHHHHHHHHHHHHH
Q psy12143 397 KV---LIASAAM-------KILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 397 ~~---~L~~~Gi-------P~~~f~s~e~Av~al~~l~~ 425 (443)
++ ..++.|. |+|.-.+.+..++-+.++++
T Consensus 119 i~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~ 157 (332)
T 2r8w_A 119 VALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAG 157 (332)
T ss_dssp HHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 43 4455562 55323455555554444443
No 135
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=54.34 E-value=1.2e+02 Score=29.40 Aligned_cols=101 Identities=12% Similarity=0.094 Sum_probs=59.5
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHHH-HcCCCCcEEEEeCCCCHHHHHH
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAAQ-ELSLKIPIICRLQGTNVDDAKV 398 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~~-~~~~~kpiv~~~~g~~~~~~~~ 398 (443)
--|.|=-|+.+.+.+.+-++.+.+ .++|+|+++-..|. .+.++-. .+++... ..+.+.||++..++.+..++++
T Consensus 40 vTPF~~dg~ID~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~eEr~-~vi~~~ve~~~grvpViaGvg~~st~eai~ 117 (343)
T 2v9d_A 40 STIFTADGQLDKPGTAALIDDLIK-AGVDGLFFLGSGGEFSQLGAEERK-AIARFAIDHVDRRVPVLIGTGGTNARETIE 117 (343)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHH-TTCSCEEESSTTTTGGGSCHHHHH-HHHHHHHHHHTTSSCEEEECCSSCHHHHHH
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHH-cCCCEEEeCccccChhhCCHHHHH-HHHHHHHHHhCCCCcEEEecCCCCHHHHHH
Confidence 456665688998999999999886 57999998544432 2222222 2233222 2234689998877666566543
Q ss_pred ---HHHHCC-------CCcccCCCHHHHHHHHHHHHH
Q psy12143 399 ---LIASAA-------MKILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 399 ---~L~~~G-------iP~~~f~s~e~Av~al~~l~~ 425 (443)
..++.| -|+|.-.+.+..++-+.++++
T Consensus 118 la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~ 154 (343)
T 2v9d_A 118 LSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVAD 154 (343)
T ss_dssp HHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 445556 265323466555555444443
No 136
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=54.20 E-value=96 Score=27.74 Aligned_cols=81 Identities=16% Similarity=0.213 Sum_probs=49.5
Q ss_pred CcEEEEEcchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHH
Q psy12143 296 GSIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIIT-ADPKVCAIMVNIFGGIMRCDVIA 368 (443)
Q Consensus 296 g~iaiitngGG~g~------la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll-~dp~vd~vlv~i~~~~~~~~~~a 368 (443)
++|++++...+... -..+++.++|.+...-.-..++.+.+...++++.++ +.|.+++|++. .+.+|
T Consensus 121 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a 193 (275)
T 3d8u_A 121 KNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALVCS-------HEEIA 193 (275)
T ss_dssp CCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCEEEES-------SHHHH
T ss_pred CeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCccEEEeCCCChhHHHHHHHHHHhCCCCCCEEEEc-------CcHHH
Confidence 56999976533211 134677777755432222235666665555555554 45789998851 36788
Q ss_pred HHHHHHHHHcCCCCc
Q psy12143 369 EGIIAAAQELSLKIP 383 (443)
Q Consensus 369 ~~i~~~~~~~~~~kp 383 (443)
.++++++++.+...|
T Consensus 194 ~g~~~al~~~g~~vP 208 (275)
T 3d8u_A 194 IGALFECHRRVLKVP 208 (275)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcCCCCC
Confidence 999999988765444
No 137
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=53.01 E-value=86 Score=28.31 Aligned_cols=81 Identities=20% Similarity=0.230 Sum_probs=47.2
Q ss_pred CcEEEEEcchhHH------HHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHc-CCCccEEEEEccCCCCChHHHH
Q psy12143 296 GSIGCLVNGAGLA------MATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITA-DPKVCAIMVNIFGGIMRCDVIA 368 (443)
Q Consensus 296 g~iaiitngGG~g------~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~-dp~vd~vlv~i~~~~~~~~~~a 368 (443)
++|++++...+.. --..+++.++|.......-..++.+.+...++++.+++ .|++|+|++. .+.+|
T Consensus 127 ~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a 199 (289)
T 1dbq_A 127 REIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCG-------GDIMA 199 (289)
T ss_dssp CSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEES-------CHHHH
T ss_pred CeEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEEEC-------CcHHH
Confidence 5688886543211 11346777777543221123455555554555555554 5889999851 36788
Q ss_pred HHHHHHHHHcCCCCc
Q psy12143 369 EGIIAAAQELSLKIP 383 (443)
Q Consensus 369 ~~i~~~~~~~~~~kp 383 (443)
.++++++++.+...|
T Consensus 200 ~g~~~al~~~G~~vP 214 (289)
T 1dbq_A 200 MGALCAADEMGLRVP 214 (289)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcCCCCC
Confidence 899999888765434
No 138
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=52.85 E-value=1.3e+02 Score=27.24 Aligned_cols=122 Identities=11% Similarity=0.066 Sum_probs=64.3
Q ss_pred CcEEEEEcchhHHH-----HHHHHHHHcCCCCCCeeee-cCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHH
Q psy12143 296 GSIGCLVNGAGLAM-----ATMDIIKLHGGEPANFLDV-GGGATAAQ-VKEAFKIITADPKVCAIMVNIFGGIMRCDVIA 368 (443)
Q Consensus 296 g~iaiitngGG~g~-----la~D~~~~~G~~~~NPvDl-~g~~~~~~-~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a 368 (443)
++|++++..+.... -..+++..+|.. ..++.+ .++.+.+. +..+.+.+.+.|++++|++. .+.+|
T Consensus 128 ~~i~~i~~~~~~~~~~R~~gf~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a 199 (305)
T 3g1w_A 128 GEVAVITLPNQLNHQERTTGFKETLEAEFPA-IEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFAT-------EANGG 199 (305)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHHHCTT-EEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEES-------SHHHH
T ss_pred cEEEEEeCCCcccHHHHHHHHHHHHHhhCCC-CEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEEEC-------CCcch
Confidence 45999985543211 123455555533 223333 45666665 44444555567899998851 36788
Q ss_pred HHHHHHHHHcCCCCcE-EEEeCCCCHHHHHHHHHHCCCCcccCCCHHH-HHHHHHHHHHHH
Q psy12143 369 EGIIAAAQELSLKIPI-ICRLQGTNVDDAKVLIASAAMKILPCDNLDE-AARLAVKLSSIV 427 (443)
Q Consensus 369 ~~i~~~~~~~~~~kpi-v~~~~g~~~~~~~~~L~~~GiP~~~f~s~e~-Av~al~~l~~~~ 427 (443)
.++.+++++.+...-| |+.+.+ .++....+....+-..+..++++ +-.++..|.+++
T Consensus 200 ~g~~~al~~~g~~~di~vig~d~--~~~~~~~~~~~~l~ttv~~~~~~~g~~av~~l~~~i 258 (305)
T 3g1w_A 200 VGVGDAVRLESRAGEIQIISFDT--DKGTLDLVDEGIISATLAQGTWNMGYWSLTYLFHLH 258 (305)
T ss_dssp HHHHHHHHHTTCTTTSEEEEESC--CHHHHHHHHTTSSCEEEEECHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhcCCCCCeEEEEeCC--CHHHHHHHHcCceEEEEecChHHHHHHHHHHHHHHh
Confidence 8999999886543222 333333 23445556554431222334433 444444455554
No 139
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=52.30 E-value=1.1e+02 Score=26.09 Aligned_cols=121 Identities=21% Similarity=0.147 Sum_probs=70.0
Q ss_pred CCcEEEEEcch-----hHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHH
Q psy12143 295 DGSIGCLVNGA-----GLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAE 369 (443)
Q Consensus 295 ~g~iaiitngG-----G~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~ 369 (443)
+++|.+-|.+| |. .+.+..+...|.. -+|++.+.+.+.+.+++.. -+.|.|.+++..+ .......
T Consensus 18 ~~~vlla~~~gd~HdiG~-~~va~~l~~~G~e---Vi~lG~~~p~e~lv~aa~~----~~~diV~lS~~~~--~~~~~~~ 87 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGA-KVVARALRDAGFE---VVYTGLRQTPEQVAMAAVQ----EDVDVIGVSILNG--AHLHLMK 87 (161)
T ss_dssp SCEEEEEEESSSSCCHHH-HHHHHHHHHTTCE---EECCCSBCCHHHHHHHHHH----TTCSEEEEEESSS--CHHHHHH
T ss_pred CCEEEEEeCCCCccHHHH-HHHHHHHHHCCCE---EEECCCCCCHHHHHHHHHh----cCCCEEEEEeech--hhHHHHH
Confidence 34565555554 43 3456788888854 4567777887776555533 2456777654332 2344456
Q ss_pred HHHHHHHHcCC-CCcEEEEeCCCCHHHHHHHHHHCCCCcccCC--CHHHHHHHHHHHHHHH
Q psy12143 370 GIIAAAQELSL-KIPIICRLQGTNVDDAKVLIASAAMKILPCD--NLDEAARLAVKLSSIV 427 (443)
Q Consensus 370 ~i~~~~~~~~~-~kpiv~~~~g~~~~~~~~~L~~~GiP~~~f~--s~e~Av~al~~l~~~~ 427 (443)
.+++.+++.+. +.||++ +|.-..+..+.+++.|+-.+..+ +++++++.+..+.+..
T Consensus 88 ~~i~~L~~~g~~~i~v~v--GG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~~ 146 (161)
T 2yxb_A 88 RLMAKLRELGADDIPVVL--GGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEEK 146 (161)
T ss_dssp HHHHHHHHTTCTTSCEEE--EECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEE--eCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHHh
Confidence 66666666432 455543 34323334456888998731122 3577888887776554
No 140
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=51.99 E-value=39 Score=29.34 Aligned_cols=88 Identities=16% Similarity=0.269 Sum_probs=53.6
Q ss_pred CcEEEEEcc------hhHHHHHHHHHHHcCCCCCCe--eeecCCCCHHHHHHHHHHHHcCCCccEEEE--Ecc-CCCCC-
Q psy12143 296 GSIGCLVNG------AGLAMATMDIIKLHGGEPANF--LDVGGGATAAQVKEAFKIITADPKVCAIMV--NIF-GGIMR- 363 (443)
Q Consensus 296 g~iaiitng------GG~g~la~D~~~~~G~~~~NP--vDl~g~~~~~~~~~al~~ll~dp~vd~vlv--~i~-~~~~~- 363 (443)
.||+|+... ..+---+.|.+..+|.+..|. +.+.|... +--+.+.+++..++|+|+. .+. |+...
T Consensus 12 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~Gv~~~~i~v~~VPGafE---iP~aa~~la~~~~yDavIaLG~VIrG~T~Hf 88 (157)
T 2obx_A 12 VRIAVVRARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYE---IPLHARTLAETGRYGAVLGTAFVVNGGIYRH 88 (157)
T ss_dssp EEEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGG---HHHHHHHHHHHTCCSEEEEEEECCCCSSBCC
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHH---HHHHHHHHHhcCCCCEEEEeeccccCCCcHH
Confidence 357777543 245555778999999765443 23334332 3344566677788999997 233 33333
Q ss_pred ---hHHHHHHHHHHHHHcCCCCcEEEEe
Q psy12143 364 ---CDVIAEGIIAAAQELSLKIPIICRL 388 (443)
Q Consensus 364 ---~~~~a~~i~~~~~~~~~~kpiv~~~ 388 (443)
|..++++|.+..-+ +++||....
T Consensus 89 d~Va~~vs~Gl~~v~L~--~~vPV~~GV 114 (157)
T 2obx_A 89 EFVASAVIDGMMNVQLS--TGVPVLSAV 114 (157)
T ss_dssp HHHHHHHHHHHHHHHHH--HCCCEEEEE
T ss_pred HHHHHHHHHHHHHHHhh--cCCCEEEEe
Confidence 45556777776555 579998653
No 141
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=51.24 E-value=27 Score=31.45 Aligned_cols=60 Identities=15% Similarity=0.111 Sum_probs=37.3
Q ss_pred eeecCCCCHH---HHHHHHHHHHcCCCccEEEE--EccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCC
Q psy12143 326 LDVGGGATAA---QVKEAFKIITADPKVCAIMV--NIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQG 390 (443)
Q Consensus 326 vDl~g~~~~~---~~~~al~~ll~dp~vd~vlv--~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g 390 (443)
+-+.|..+.. .+...|+.+.++++++.|++ |.+||. ..-+..|.+..+. .++||++.+.|
T Consensus 30 i~l~G~I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPGG~---v~a~~~I~~~i~~--~~~pV~~~v~g 94 (208)
T 2cby_A 30 IFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGS---ISAGMAIYDTMVL--APCDIATYAMG 94 (208)
T ss_dssp EEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBC---HHHHHHHHHHHHH--CSSCEEEEEEE
T ss_pred EEEcCEECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCCCC---HHHHHHHHHHHHh--cCCCEEEEECc
Confidence 4455555543 35666666677777776655 777773 1234666777776 46898876544
No 142
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=51.17 E-value=92 Score=28.37 Aligned_cols=81 Identities=25% Similarity=0.192 Sum_probs=50.3
Q ss_pred CcEEEEEcch-hHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHc-CCCccEEEEEccCCCCChHHH
Q psy12143 296 GSIGCLVNGA-GLAM------ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITA-DPKVCAIMVNIFGGIMRCDVI 367 (443)
Q Consensus 296 g~iaiitngG-G~g~------la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~-dp~vd~vlv~i~~~~~~~~~~ 367 (443)
++|++++... +... -..+++.++|.+...-.-..++.+.+.-.++++.+++ .|.+++||+. .+.+
T Consensus 134 ~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~ 206 (289)
T 2fep_A 134 TDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAILSA-------TDEM 206 (289)
T ss_dssp SSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEEES-------SHHH
T ss_pred CeEEEEeCCccccccHHHHHHHHHHHHHHcCCCCChheEeeCCCCHHHHHHHHHHHHcCCCCCCEEEEC-------CHHH
Confidence 5799998654 3221 2346777777553321123456666655555665554 5789999851 3678
Q ss_pred HHHHHHHHHHcCCCCc
Q psy12143 368 AEGIIAAAQELSLKIP 383 (443)
Q Consensus 368 a~~i~~~~~~~~~~kp 383 (443)
|.++++++++.+...|
T Consensus 207 A~g~~~al~~~G~~vP 222 (289)
T 2fep_A 207 ALGIIHAAQDQGLSIP 222 (289)
T ss_dssp HHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHcCCCCC
Confidence 8899999988754433
No 143
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=50.11 E-value=1.3e+02 Score=28.42 Aligned_cols=101 Identities=10% Similarity=0.076 Sum_probs=58.4
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHH-HHcCCCCcEEEEeCCCCHHHHHH
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAA-QELSLKIPIICRLQGTNVDDAKV 398 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~-~~~~~~kpiv~~~~g~~~~~~~~ 398 (443)
--|+|=- ..+.+.+.+-++.+.+ .++|+++++-..|. ...++-. .+++.. +..+.+.||++..+.++..++++
T Consensus 12 vTPf~~d-~iD~~~l~~lv~~li~-~Gv~gl~v~GttGE~~~Lt~~Er~-~v~~~~~~~~~grvpviaGvg~~~t~~ai~ 88 (292)
T 3daq_A 12 TTPFTNN-KVNLEALKAHVNFLLE-NNAQAIIVNGTTAESPTLTTDEKE-LILKTVIDLVDKRVPVIAGTGTNDTEKSIQ 88 (292)
T ss_dssp CCCEETT-EECHHHHHHHHHHHHH-TTCCEEEESSGGGTGGGSCHHHHH-HHHHHHHHHHTTSSCEEEECCCSCHHHHHH
T ss_pred ecCcCCC-CcCHHHHHHHHHHHHH-cCCCEEEECccccccccCCHHHHH-HHHHHHHHHhCCCCcEEEeCCcccHHHHHH
Confidence 3466544 6777888888888875 68999998544332 1222222 222222 22234689998777665556543
Q ss_pred ---HHHHCCC-------CcccCCCHHHHHHHHHHHHHH
Q psy12143 399 ---LIASAAM-------KILPCDNLDEAARLAVKLSSI 426 (443)
Q Consensus 399 ---~L~~~Gi-------P~~~f~s~e~Av~al~~l~~~ 426 (443)
..++.|. |+|.-.+.+..++-+.++++.
T Consensus 89 la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a 126 (292)
T 3daq_A 89 ASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADA 126 (292)
T ss_dssp HHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh
Confidence 5555663 664334666555555555443
No 144
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=50.06 E-value=76 Score=29.83 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=49.8
Q ss_pred CcEEEEEcchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHc-CCCccEEEEEccCCCCChHHHH
Q psy12143 296 GSIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITA-DPKVCAIMVNIFGGIMRCDVIA 368 (443)
Q Consensus 296 g~iaiitngGG~g~------la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~-dp~vd~vlv~i~~~~~~~~~~a 368 (443)
++|++++...+... -..+++.++|.......-..++.+.+.-.++++.+++ .|.+++||+. .|.+|
T Consensus 178 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~-------nd~~A 250 (340)
T 1qpz_A 178 REIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCG-------GDIMA 250 (340)
T ss_dssp CCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEES-------SHHHH
T ss_pred CEEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChhheEeCCCCHHHHHHHHHHHHcCCCCCcEEEEC-------CHHHH
Confidence 56999975433211 1346777777543222223455666655555555554 5789999851 37788
Q ss_pred HHHHHHHHHcCCCCc
Q psy12143 369 EGIIAAAQELSLKIP 383 (443)
Q Consensus 369 ~~i~~~~~~~~~~kp 383 (443)
.++.+++++.+...|
T Consensus 251 ~g~~~al~~~G~~vP 265 (340)
T 1qpz_A 251 MGALCAADEMGLRVP 265 (340)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcCCCCC
Confidence 899999998765444
No 145
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=49.98 E-value=87 Score=28.33 Aligned_cols=81 Identities=19% Similarity=0.195 Sum_probs=50.1
Q ss_pred CcEEEEEcchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHH
Q psy12143 296 GSIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIIT-ADPKVCAIMVNIFGGIMRCDVIA 368 (443)
Q Consensus 296 g~iaiitngGG~g~------la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll-~dp~vd~vlv~i~~~~~~~~~~a 368 (443)
++|++++...+... -..+++..+|.......-..++.+.+...++++.++ +.|.+++|++. .+.+|
T Consensus 132 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a 204 (292)
T 3k4h_A 132 KQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIMAT-------DDLIG 204 (292)
T ss_dssp CCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEEES-------SHHHH
T ss_pred ceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEEEc-------ChHHH
Confidence 46999986543221 134677777765432222345666665444454444 56899999852 36788
Q ss_pred HHHHHHHHHcCCCCc
Q psy12143 369 EGIIAAAQELSLKIP 383 (443)
Q Consensus 369 ~~i~~~~~~~~~~kp 383 (443)
.++++++++.+...|
T Consensus 205 ~g~~~al~~~g~~vP 219 (292)
T 3k4h_A 205 LGVLSALSKKGFVVP 219 (292)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHhCCCCC
Confidence 899999998765434
No 146
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=49.78 E-value=91 Score=28.32 Aligned_cols=81 Identities=20% Similarity=0.104 Sum_probs=49.6
Q ss_pred CcEEEEEcchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHc--CC-CccEEEEEccCCCCChHH
Q psy12143 296 GSIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITA--DP-KVCAIMVNIFGGIMRCDV 366 (443)
Q Consensus 296 g~iaiitngGG~g~------la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~--dp-~vd~vlv~i~~~~~~~~~ 366 (443)
++|++++...+... -..+++.++|.+.....-..++.+.+.-.++++.+++ .| .+++||+. .+.
T Consensus 126 ~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~-------~d~ 198 (287)
T 3bbl_A 126 RRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYILRGEGTFEVGRAMTLHLLDLSPERRPTAIMTL-------NDT 198 (287)
T ss_dssp CCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSCSEEEES-------SHH
T ss_pred CeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHHhhCCCCCCcEEEEC-------CcH
Confidence 56999875533211 1346777777553221112455666655555665554 57 89999851 367
Q ss_pred HHHHHHHHHHHcCCCCc
Q psy12143 367 IAEGIIAAAQELSLKIP 383 (443)
Q Consensus 367 ~a~~i~~~~~~~~~~kp 383 (443)
+|.++++++++.+...|
T Consensus 199 ~a~g~~~al~~~G~~vP 215 (287)
T 3bbl_A 199 MAIGAMAAARERGLTIG 215 (287)
T ss_dssp HHHHHHHHHHHTTCCBT
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 88899999988765434
No 147
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=48.19 E-value=1.4e+02 Score=25.94 Aligned_cols=121 Identities=13% Similarity=0.185 Sum_probs=67.8
Q ss_pred CcEEEEEcc------hhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEE--Ecc-CCCCC---
Q psy12143 296 GSIGCLVNG------AGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMV--NIF-GGIMR--- 363 (443)
Q Consensus 296 g~iaiitng------GG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv--~i~-~~~~~--- 363 (443)
-||+|+... ..+---+.|.+..+|.+--.-+.+-|.. .=|+ +.+.+.+ ++|+|+. .+. |+...
T Consensus 18 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~~i~v~~VPGaf-EiP~--aak~la~--~yDavIaLG~VIrG~T~Hfd~ 92 (160)
T 2c92_A 18 VRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAI-EIPV--VAQELAR--NHDAVVALGVVIRGQTPHFDY 92 (160)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHHHHTTCSCCEEEEESSGG-GHHH--HHHHHHT--SCSEEEEEEEEECCSSTHHHH
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCceEEEECCcHH-HHHH--HHHHHHh--cCCEEEEEeeeecCCchHHHH
Confidence 468888543 2455567899999996522223333433 2343 3455554 4999997 222 33333
Q ss_pred -hHHHHHHHHHHHHHcCCCCcEEEEe-CCCCHHHHHHHHHHCCCCcccCC-CHHHHHHHHHHHHHHH
Q psy12143 364 -CDVIAEGIIAAAQELSLKIPIICRL-QGTNVDDAKVLIASAAMKILPCD-NLDEAARLAVKLSSIV 427 (443)
Q Consensus 364 -~~~~a~~i~~~~~~~~~~kpiv~~~-~g~~~~~~~~~L~~~GiP~~~f~-s~e~Av~al~~l~~~~ 427 (443)
|..++++|.+..-+ +++||+... ...+.+++. +..|.+-. +. -=.+|+.+...|+++.
T Consensus 93 Va~~vs~Gl~~v~L~--~~vPV~~GVLT~~~~eQA~---~Rag~~~~-~~nKG~eaA~aalem~~l~ 153 (160)
T 2c92_A 93 VCDAVTQGLTRVSLD--SSTPIANGVLTTNTEEQAL---DRAGLPTS-AEDKGAQATVAALATALTL 153 (160)
T ss_dssp HHHHHHHHHHHHHHH--HTCCEEEEEEEESSHHHHH---TTBTCTTC-SCBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh--cCCCEEEEEcCCCCHHHHH---HHhccccc-cchhHHHHHHHHHHHHHHH
Confidence 34556677766555 579998653 333455543 44565310 22 2456666666666654
No 148
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=47.28 E-value=92 Score=28.59 Aligned_cols=81 Identities=19% Similarity=0.186 Sum_probs=50.9
Q ss_pred CcEEEEEcchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHH-----H-cCCCccEEEEEccCCCCC
Q psy12143 296 GSIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKII-----T-ADPKVCAIMVNIFGGIMR 363 (443)
Q Consensus 296 g~iaiitngGG~g~------la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~l-----l-~dp~vd~vlv~i~~~~~~ 363 (443)
++|++++...+... -..+++.++|.......-..++.+.+.-.++++.+ + +.|.+++||+.
T Consensus 132 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~~------- 204 (303)
T 3kke_A 132 SRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVVVA------- 204 (303)
T ss_dssp CSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEEEES-------
T ss_pred CeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEEEEC-------
Confidence 46999876543211 13467777776543222334666666655555555 4 47889999851
Q ss_pred hHHHHHHHHHHHHHcCCCCc
Q psy12143 364 CDVIAEGIIAAAQELSLKIP 383 (443)
Q Consensus 364 ~~~~a~~i~~~~~~~~~~kp 383 (443)
.|.+|-++.+++++.+...|
T Consensus 205 nd~~A~g~~~al~~~G~~vP 224 (303)
T 3kke_A 205 SVNAAVGALSTALRLGLRVP 224 (303)
T ss_dssp SHHHHHHHHHHHHHTTCCTT
T ss_pred CHHHHHHHHHHHHHcCCCCC
Confidence 37888999999998765444
No 149
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=46.42 E-value=1.3e+02 Score=28.75 Aligned_cols=101 Identities=8% Similarity=0.017 Sum_probs=59.7
Q ss_pred CCCee-eecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHHH-HcCCCCcEEEEeCCCCHHHH
Q psy12143 322 PANFL-DVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAAQ-ELSLKIPIICRLQGTNVDDA 396 (443)
Q Consensus 322 ~~NPv-Dl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~~-~~~~~kpiv~~~~g~~~~~~ 396 (443)
+--|. |=-|+.+.+.+.+-++.+.+ .++|+++++-..|. .+.++- ..+++... ..+.+.||++..++ +..++
T Consensus 19 ~vTPF~~~dg~iD~~~l~~lv~~li~-~Gv~gl~v~GtTGE~~~Ls~eEr-~~vi~~~~~~~~grvpViaGvg~-st~~a 95 (314)
T 3d0c_A 19 NIVPFLEGTREIDWKGLDDNVEFLLQ-NGIEVIVPNGNTGEFYALTIEEA-KQVATRVTELVNGRATVVAGIGY-SVDTA 95 (314)
T ss_dssp CCCCBCTTTCCBCHHHHHHHHHHHHH-TTCSEECTTSGGGTGGGSCHHHH-HHHHHHHHHHHTTSSEEEEEECS-SHHHH
T ss_pred eeccccCCCCCCCHHHHHHHHHHHHH-cCCCEEEECcccCChhhCCHHHH-HHHHHHHHHHhCCCCeEEecCCc-CHHHH
Confidence 45676 55688999999999999887 47999987433331 222222 22233222 22346899987777 66666
Q ss_pred HH---HHHHCCC-------CcccCCCHHHHHHHHHHHHH
Q psy12143 397 KV---LIASAAM-------KILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 397 ~~---~L~~~Gi-------P~~~f~s~e~Av~al~~l~~ 425 (443)
++ ..++.|. |+|.-.+.+..++-+.++++
T Consensus 96 i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~ 134 (314)
T 3d0c_A 96 IELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIE 134 (314)
T ss_dssp HHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence 54 4555662 55333466655555444443
No 150
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=45.88 E-value=66 Score=30.61 Aligned_cols=104 Identities=12% Similarity=0.050 Sum_probs=60.8
Q ss_pred CCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHH
Q psy12143 322 PANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKV 398 (443)
Q Consensus 322 ~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~ 398 (443)
+--|+|=-|+.+.+.+.+-++.+.+ .++|+++++-..|. .+.++-.+-+..+.+..+.+.||++..++++..++++
T Consensus 12 ~vTPf~~dg~iD~~~l~~lv~~li~-~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~ 90 (300)
T 3eb2_A 12 LVSPVDAEGRVRADVMGRLCDDLIQ-AGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVA 90 (300)
T ss_dssp CCCCBCTTSCBCHHHHHHHHHHHHH-TTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHH
T ss_pred EeccCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHH
Confidence 3457776788998999999999886 68999987433331 2223222222222222234689998776655555543
Q ss_pred ---HHHHCCC-------CcccCCCHHHHHHHHHHHHHH
Q psy12143 399 ---LIASAAM-------KILPCDNLDEAARLAVKLSSI 426 (443)
Q Consensus 399 ---~L~~~Gi-------P~~~f~s~e~Av~al~~l~~~ 426 (443)
..++.|. |+|.-.+.+..++-+.++++.
T Consensus 91 la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a 128 (300)
T 3eb2_A 91 QAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADA 128 (300)
T ss_dssp HHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHH
Confidence 5555663 664334666655555555443
No 151
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=45.64 E-value=1.3e+02 Score=27.08 Aligned_cols=81 Identities=22% Similarity=0.254 Sum_probs=47.4
Q ss_pred CcEEEEEcchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHc-CCCccEEEEEccCCCCChHHHH
Q psy12143 296 GSIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITA-DPKVCAIMVNIFGGIMRCDVIA 368 (443)
Q Consensus 296 g~iaiitngGG~g~------la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~-dp~vd~vlv~i~~~~~~~~~~a 368 (443)
++|++++...+... -..+++.++|.+...-.-..++.+.+...++++.+++ .|++|+|++. .+.+|
T Consensus 140 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a 212 (296)
T 3brq_A 140 QEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVAS-------NDDMA 212 (296)
T ss_dssp CSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEEEES-------SHHHH
T ss_pred ceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEEEC-------ChHHH
Confidence 56999976533211 1346677777553221113455566655555555554 5889999851 36778
Q ss_pred HHHHHHHHHcCCCCc
Q psy12143 369 EGIIAAAQELSLKIP 383 (443)
Q Consensus 369 ~~i~~~~~~~~~~kp 383 (443)
.++++++++.+...|
T Consensus 213 ~g~~~al~~~g~~vP 227 (296)
T 3brq_A 213 IGAMKALHERGVAVP 227 (296)
T ss_dssp HHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHcCCCCC
Confidence 888898888765434
No 152
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=45.36 E-value=1.1e+02 Score=28.06 Aligned_cols=101 Identities=11% Similarity=0.088 Sum_probs=60.6
Q ss_pred CcEEEEEcchhH-HHHHHHHHHHcCCCCCCeeeec-------CCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHH
Q psy12143 296 GSIGCLVNGAGL-AMATMDIIKLHGGEPANFLDVG-------GGATAAQVKEAFKIIT-ADPKVCAIMVNIFGGIMRCDV 366 (443)
Q Consensus 296 g~iaiitngGG~-g~la~D~~~~~G~~~~NPvDl~-------g~~~~~~~~~al~~ll-~dp~vd~vlv~i~~~~~~~~~ 366 (443)
+||+++|.-.-. .-...+.++..|..+..|.... |..+.+.+.+.++.++ .++++|+|++.++ ......
T Consensus 118 ~rvglltpy~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaivL~CT-~l~~l~- 195 (240)
T 3ixl_A 118 RRVALATAYIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILLSSG-GLLTLD- 195 (240)
T ss_dssp SEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEEECT-TSCCTT-
T ss_pred CEEEEEeCChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEEEeCC-CCchhh-
Confidence 679999985533 2345578888896544333221 3456667888888744 7899999998533 222111
Q ss_pred HHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCc
Q psy12143 367 IAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKI 407 (443)
Q Consensus 367 ~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~ 407 (443)
+++.+ .++ .++||+- .+..-.+..|+..|++.
T Consensus 196 ~i~~l---e~~--lg~PVid----s~~a~~w~~lr~~g~~~ 227 (240)
T 3ixl_A 196 AIPEV---ERR--LGVPVVS----SSPAGFWDAVRLAGGGA 227 (240)
T ss_dssp HHHHH---HHH--HSSCEEE----HHHHHHHHHHHHTTSCC
T ss_pred hHHHH---HHH--hCCCEEe----HHHHHHHHHHHHcCCCC
Confidence 22222 223 3689863 22344677888888764
No 153
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=45.34 E-value=96 Score=28.21 Aligned_cols=81 Identities=12% Similarity=0.126 Sum_probs=47.8
Q ss_pred CcEEEEEcchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHH-HcCCCccEEEEEccCCCCChHHHH
Q psy12143 296 GSIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKII-TADPKVCAIMVNIFGGIMRCDVIA 368 (443)
Q Consensus 296 g~iaiitngGG~g~------la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~l-l~dp~vd~vlv~i~~~~~~~~~~a 368 (443)
++|++++...+... -..+++.++|.+...-.-+.++.+.+.-.++++.+ .+.|.+++||+. .+.+|
T Consensus 129 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~A 201 (290)
T 2rgy_A 129 RKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLFCA-------NDTMA 201 (290)
T ss_dssp CSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEEES-------SHHHH
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCcccEEecCCChhHHHHHHHHHHhCCCCCcEEEEC-------CcHHH
Confidence 56999986533211 13456666665432111123555655544444444 456889999851 36788
Q ss_pred HHHHHHHHHcCCCCc
Q psy12143 369 EGIIAAAQELSLKIP 383 (443)
Q Consensus 369 ~~i~~~~~~~~~~kp 383 (443)
.++.+++++.+...|
T Consensus 202 ~g~~~al~~~G~~vP 216 (290)
T 2rgy_A 202 VSALARFQQLGISVP 216 (290)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcCCCCC
Confidence 899999998765444
No 154
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=45.01 E-value=1.2e+02 Score=24.54 Aligned_cols=101 Identities=14% Similarity=0.014 Sum_probs=57.3
Q ss_pred cCCcEEEEEcchhHHHHHHHHHHHcCCCC---------------CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 294 LDGSIGCLVNGAGLAMATMDIIKLHGGEP---------------ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 294 ~~g~iaiitngGG~g~la~D~~~~~G~~~---------------~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
+.+++.|+. .|-.|...+..+...|..+ .+.--+.|+++.....+.. .-.+.|.+++..+
T Consensus 6 ~~~~viIiG-~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a----~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 6 ICNHALLVG-YGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLA----HLECAKWLILTIP 80 (140)
T ss_dssp CCSCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHT----TGGGCSEEEECCS
T ss_pred CCCCEEEEC-cCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhc----CcccCCEEEEECC
Confidence 456677775 5779999999999998431 1111244565544322111 1135677775322
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCc
Q psy12143 359 GGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKI 407 (443)
Q Consensus 359 ~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~ 407 (443)
. +.....++..+++.++..+|+++.... +..+.|++.|+-.
T Consensus 81 ~-----~~~n~~~~~~a~~~~~~~~iiar~~~~---~~~~~l~~~G~d~ 121 (140)
T 3fwz_A 81 N-----GYEAGEIVASARAKNPDIEIIARAHYD---DEVAYITERGANQ 121 (140)
T ss_dssp C-----HHHHHHHHHHHHHHCSSSEEEEEESSH---HHHHHHHHTTCSE
T ss_pred C-----hHHHHHHHHHHHHHCCCCeEEEEECCH---HHHHHHHHCCCCE
Confidence 1 222233444455554567787776543 3456888899875
No 155
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=44.85 E-value=37 Score=30.13 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHcCCCccEEEE--EccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCC
Q psy12143 335 AQVKEAFKIITADPKVCAIMV--NIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGT 391 (443)
Q Consensus 335 ~~~~~al~~ll~dp~vd~vlv--~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~ 391 (443)
+.+...|+.+.++++++.|++ |.+||. ..-+..|.+..+. .++||++.+.|.
T Consensus 41 ~~i~~~L~~l~~~~~~~~I~l~InSPGG~---v~a~~~I~~~i~~--~~~pV~~~v~g~ 94 (193)
T 1yg6_A 41 NLIVAQMLFLEAENPEKDIYLYINSPGGV---ITAGMSIYDTMQF--IKPDVSTICMGQ 94 (193)
T ss_dssp HHHHHHHHHHHHHCSSSCEEEEEEECCBC---HHHHHHHHHHHHH--SSSCEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECcCCC---HHHHHHHHHHHHh--cCCCEEEEEeee
Confidence 446666776666666666554 778773 1234566677776 468888766543
No 156
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=44.09 E-value=2e+02 Score=26.81 Aligned_cols=99 Identities=18% Similarity=0.107 Sum_probs=58.9
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC--CChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHH--
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI--MRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKV-- 398 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~--~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~-- 398 (443)
--|.| -|+.+.+.+.+-++.+.+ .++|+++++-..|. ....+=-..+++...+. .+. |++..++.+..++++
T Consensus 8 vTPf~-dg~iD~~~l~~lv~~li~-~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~-~~g-vi~Gvg~~~t~~ai~la 83 (286)
T 2r91_A 8 ITTFR-GGRLDPELFANHVKNITS-KGVDVVFVAGTTGLGPALSLQEKMELTDAATSA-ARR-VIVQVASLNADEAIALA 83 (286)
T ss_dssp CCCEE-TTEECHHHHHHHHHHHHH-TTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHH-CSS-EEEECCCSSHHHHHHHH
T ss_pred ecCcC-CCccCHHHHHHHHHHHHH-CCCCEEEECccccChhhCCHHHHHHHHHHHHHH-hCC-EEEeeCCCCHHHHHHHH
Confidence 46888 899999999999999886 57999998544442 22222223444444443 223 666666655566543
Q ss_pred -HHHHCCC-------CcccC-CCHHHHHHHHHHHHH
Q psy12143 399 -LIASAAM-------KILPC-DNLDEAARLAVKLSS 425 (443)
Q Consensus 399 -~L~~~Gi-------P~~~f-~s~e~Av~al~~l~~ 425 (443)
..++.|. |+|.- .+.+..++-+.++++
T Consensus 84 ~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~ 119 (286)
T 2r91_A 84 KYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCS 119 (286)
T ss_dssp HHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHH
Confidence 4555662 55322 466655555555443
No 157
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=43.33 E-value=1e+02 Score=29.14 Aligned_cols=103 Identities=13% Similarity=0.016 Sum_probs=53.5
Q ss_pred cEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCC--------------CCHHHHHHHHHHHH-cCCCccEEEEEccCCC
Q psy12143 297 SIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGG--------------ATAAQVKEAFKIIT-ADPKVCAIMVNIFGGI 361 (443)
Q Consensus 297 ~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~--------------~~~~~~~~al~~ll-~dp~vd~vlv~i~~~~ 361 (443)
|||||..||-.|-.-+.++...+....--+|.... .+.+.+.+.++.+. +||++|+|+|..+..
T Consensus 5 rvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~- 83 (312)
T 3o9z_A 5 RFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNH- 83 (312)
T ss_dssp EEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGG-
T ss_pred EEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCch-
Confidence 68999887767777788888776332111121111 01112222222233 789999999744322
Q ss_pred CChHHHHHHHHHHHHHcCCCCcEEEE-eCCCCHHHHH---HHHHHCCCCc
Q psy12143 362 MRCDVIAEGIIAAAQELSLKIPIICR-LQGTNVDDAK---VLIASAAMKI 407 (443)
Q Consensus 362 ~~~~~~a~~i~~~~~~~~~~kpiv~~-~~g~~~~~~~---~~L~~~GiP~ 407 (443)
.=++-+.++++ ..|+|++= ....+..++. +..++.|+.+
T Consensus 84 ----~H~~~~~~al~---aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~ 126 (312)
T 3o9z_A 84 ----LHYPQIRMALR---LGANALSEKPLVLWPEEIARLKELEARTGRRV 126 (312)
T ss_dssp ----GHHHHHHHHHH---TTCEEEECSSSCSCHHHHHHHHHHHHHHCCCE
T ss_pred ----hhHHHHHHHHH---CCCeEEEECCCCCCHHHHHHHHHHHHHcCCEE
Confidence 11233333343 36777752 3344445543 3455678765
No 158
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=43.19 E-value=40 Score=32.48 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=45.1
Q ss_pred CcEEEEEcchhHHH-HH----HHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q psy12143 296 GSIGCLVNGAGLAM-AT----MDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFG 359 (443)
Q Consensus 296 g~iaiitngGG~g~-la----~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~ 359 (443)
..+++|-.|--.+. .+ .-+|++.|.. ..-+++..+.+.+.+.+.++.+-+||+|++|+|..|.
T Consensus 54 P~LavIlVG~dpaS~~Yv~~K~k~c~~vGi~-s~~~~lp~~~se~ell~~I~~LN~D~~V~GIlVQlPL 121 (303)
T 4b4u_A 54 PILATILVGDDGASATYVRMKGNACRRVGMD-SLKIELPQETTTEQLLAEIEKLNANPDVHGILLQHPV 121 (303)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHTTCE-EEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSC
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHHHHcCCe-EEEEecCccCCHHHHHHHHHHhcCCCCccEEEEeCCC
Confidence 34665555444333 22 3477777855 4456788888988899999999999999999996543
No 159
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=43.06 E-value=1.6e+02 Score=27.59 Aligned_cols=99 Identities=6% Similarity=0.028 Sum_probs=57.4
Q ss_pred CeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHHH-HcCCCCcEEEEeCCCCHHHHHH-
Q psy12143 324 NFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAAQ-ELSLKIPIICRLQGTNVDDAKV- 398 (443)
Q Consensus 324 NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~~-~~~~~kpiv~~~~g~~~~~~~~- 398 (443)
-|+ =-|+.+.+.+.+-++.+.+. ++|+++++-..|. .+.++- ..+++... ..+.+.||++..++.+..++++
T Consensus 11 TPf-~dg~iD~~~l~~lv~~li~~-Gv~gl~~~GttGE~~~Ls~~Er-~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~l 87 (292)
T 2vc6_A 11 TPF-ADDRIDEVALHDLVEWQIEE-GSFGLVPCGTTGESPTLSKSEH-EQVVEITIKTANGRVPVIAGAGSNSTAEAIAF 87 (292)
T ss_dssp CCE-ETTEECHHHHHHHHHHHHHT-TCSEEETTSGGGTGGGSCHHHH-HHHHHHHHHHHTTSSCBEEECCCSSHHHHHHH
T ss_pred cCc-CCCCcCHHHHHHHHHHHHHc-CCCEEEECccccChhhCCHHHH-HHHHHHHHHHhCCCCcEEEecCCccHHHHHHH
Confidence 455 35778888899999998875 8999987433331 222222 22333322 2234689998877765555543
Q ss_pred --HHHHCCC-------CcccCCCHHHHHHHHHHHHH
Q psy12143 399 --LIASAAM-------KILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 399 --~L~~~Gi-------P~~~f~s~e~Av~al~~l~~ 425 (443)
..++.|. |+|.-.+.+..++-+.++++
T Consensus 88 a~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~ 123 (292)
T 2vc6_A 88 VRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDA 123 (292)
T ss_dssp HHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence 4555663 65333466665555555544
No 160
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=42.19 E-value=85 Score=28.64 Aligned_cols=86 Identities=12% Similarity=0.092 Sum_probs=46.8
Q ss_pred ecCCcEEEEEcch---hHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHH
Q psy12143 293 ALDGSIGCLVNGA---GLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAE 369 (443)
Q Consensus 293 ~~~g~iaiitngG---G~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~ 369 (443)
.+.|++++||.++ |.|-..+-.+...|+++ =+++ -+.+...++-+.+.+-.+.++.++ ....++.+.+.+
T Consensus 3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~V----vi~~-r~~~~~~~~~~~~~~~~~~~~~~~--~~Dv~~~~~v~~ 75 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKL----VFTY-RKERSRKELEKLLEQLNQPEAHLY--QIDVQSDEEVIN 75 (256)
T ss_dssp CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEE----EEEE-SSGGGHHHHHHHHGGGTCSSCEEE--ECCTTCHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEE----EEEE-CCHHHHHHHHHHHHhcCCCcEEEE--EccCCCHHHHHH
Confidence 4689999999843 89999999999999763 1111 122233344444433333333332 122344455555
Q ss_pred HHHHHHHHcCCCCcEEE
Q psy12143 370 GIIAAAQELSLKIPIIC 386 (443)
Q Consensus 370 ~i~~~~~~~~~~kpiv~ 386 (443)
.+.++.++++ +.-+++
T Consensus 76 ~~~~~~~~~G-~iD~lv 91 (256)
T 4fs3_A 76 GFEQIGKDVG-NIDGVY 91 (256)
T ss_dssp HHHHHHHHHC-CCSEEE
T ss_pred HHHHHHHHhC-CCCEEE
Confidence 5555555542 233444
No 161
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=41.22 E-value=38 Score=32.29 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=44.8
Q ss_pred CcEEEEEcchhHHH-H----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 296 GSIGCLVNGAGLAM-A----TMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 296 g~iaiitngGG~g~-l----a~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
..+++|-.|-=.+. . -.-+|++.|.. .--+++..+.+.+.+.+.++.+-+||+||+|+|..|
T Consensus 33 P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~-~~~~~lp~~~s~~ell~~i~~lN~D~~v~GIlvqlP 99 (281)
T 2c2x_A 33 PGLGTILVGDDPGSQAYVRGKHADCAKVGIT-SIRRDLPADISTATLNETIDELNANPDCTGYIVQLP 99 (281)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHHTCE-EEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSC
T ss_pred ceEEEEEeCCChhhHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEeCC
Confidence 45777766533322 2 23467888865 344678888888889999999999999999999544
No 162
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=41.08 E-value=2.3e+02 Score=26.63 Aligned_cols=101 Identities=8% Similarity=-0.023 Sum_probs=59.8
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHH-HHcCC-CCcEEEEeCCCCHHHHH
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAA-QELSL-KIPIICRLQGTNVDDAK 397 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~-~~~~~-~kpiv~~~~g~~~~~~~ 397 (443)
--|. =-|+.+.+.+.+-++.+.+ .++|+++++-..|. .+.++- ..+++.. +..+. +.||++..++++..+++
T Consensus 17 vTPf-~dg~iD~~~l~~lv~~li~-~Gv~gl~v~GttGE~~~Ls~~Er-~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai 93 (301)
T 3m5v_A 17 ITPF-KNGKVDEQSYARLIKRQIE-NGIDAVVPVGTTGESATLTHEEH-RTCIEIAVETCKGTKVKVLAGAGSNATHEAV 93 (301)
T ss_dssp CCCE-ETTEECHHHHHHHHHHHHH-TTCCEEECSSTTTTGGGSCHHHH-HHHHHHHHHHHTTSSCEEEEECCCSSHHHHH
T ss_pred ecCc-CCCCCCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHH-HHHHHHHHHHhCCCCCeEEEeCCCCCHHHHH
Confidence 4456 4678888889999998886 68999997544432 222222 2333332 22234 68999877766555654
Q ss_pred H---HHHHCCC-------CcccCCCHHHHHHHHHHHHHH
Q psy12143 398 V---LIASAAM-------KILPCDNLDEAARLAVKLSSI 426 (443)
Q Consensus 398 ~---~L~~~Gi-------P~~~f~s~e~Av~al~~l~~~ 426 (443)
+ ..++.|. |+|.-.+.+..++-+.++++.
T Consensus 94 ~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a 132 (301)
T 3m5v_A 94 GLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQS 132 (301)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh
Confidence 3 5556673 664334666555555555443
No 163
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=40.74 E-value=46 Score=30.20 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHcCCCccEEEE--EccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCC
Q psy12143 335 AQVKEAFKIITADPKVCAIMV--NIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQG 390 (443)
Q Consensus 335 ~~~~~al~~ll~dp~vd~vlv--~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g 390 (443)
+.+...|+.+.+|++++.|++ |.+||.. .-...|.+..+. .++||++.+.|
T Consensus 60 ~~i~~~L~~l~~~~~~k~I~l~InSPGG~v---~ag~~I~~~i~~--~~~pV~t~v~G 112 (218)
T 1y7o_A 60 NSVIAQLLFLDAQDSTKDIYLYVNTPGGSV---SAGLAIVDTMNF--IKADVQTIVMG 112 (218)
T ss_dssp HHHHHHHHHHHHHCTTSCEEEEEEECCBCH---HHHHHHHHHHHH--SSSCEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECcCCCH---HHHHHHHHHHHh--cCCCEEEEEcc
Confidence 446677777777777776665 6676631 224556666666 46898876544
No 164
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=40.05 E-value=2e+02 Score=25.59 Aligned_cols=78 Identities=29% Similarity=0.382 Sum_probs=49.4
Q ss_pred CcEEEEEcchhH----HHHHHHHHHHcCCCCCCeeeecCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHH
Q psy12143 296 GSIGCLVNGAGL----AMATMDIIKLHGGEPANFLDVGGGATAAQ-VKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEG 370 (443)
Q Consensus 296 g~iaiitngGG~----g~la~D~~~~~G~~~~NPvDl~g~~~~~~-~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~ 370 (443)
++|++++...+. ---..+++..+|......+ ..+..+.+. +..+-+.+.+.|.+++|++. .+.+|.+
T Consensus 119 ~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a~g 190 (280)
T 3gyb_A 119 THIAHLRVGSGAGLRRFESFEATMRAHGLEPLSND-YLGPAVEHAGYTETLALLKEHPEVTAIFSS-------NDITAIG 190 (280)
T ss_dssp CSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECC-CCSCCCHHHHHHHHHHHHHHCTTCCEEEES-------SHHHHHH
T ss_pred CeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCccc-ccCCCCHHHHHHHHHHHHhCCCCCCEEEEC-------ChHHHHH
Confidence 469998876654 0112356666665433222 556666665 44445555567899999852 3678889
Q ss_pred HHHHHHHcCCC
Q psy12143 371 IIAAAQELSLK 381 (443)
Q Consensus 371 i~~~~~~~~~~ 381 (443)
+.+++++.+..
T Consensus 191 ~~~al~~~g~~ 201 (280)
T 3gyb_A 191 ALGAARELGLR 201 (280)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHcCCC
Confidence 99999887654
No 165
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=39.82 E-value=31 Score=32.83 Aligned_cols=62 Identities=19% Similarity=0.142 Sum_probs=46.6
Q ss_pred CCcEEEEEcchhHHH-----HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 295 DGSIGCLVNGAGLAM-----ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 295 ~g~iaiitngGG~g~-----la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
...+++|-.|--.+- .-.-+|++.|. .--+++..+.+.+.+.+.++.+-+||++|+|+|..|
T Consensus 27 ~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi--~~~~~lp~~~s~~ell~~I~~lN~D~~v~GIlvqlP 93 (276)
T 3ngx_A 27 EPSLKLIQIGDNEAASIYARAKIRRGKKIGI--AVDLEKYDDISMKDLLKRIDDLAKDPQINGIMIENP 93 (276)
T ss_dssp CCEEEEEEESCCHHHHHHHHHHHHHHHHHTC--EEEEEEESSCCHHHHHHHHHHHHHCTTCCEEEECSC
T ss_pred CCcEEEEEeCCCHHHHHHHHHHHHHHHHCCe--EEEEECCCCCCHHHHHHHHHHHcCCCCCcEEEEeCC
Confidence 345777766544332 23347788887 667788889998889999999999999999999544
No 166
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=39.74 E-value=1.5e+02 Score=27.33 Aligned_cols=80 Identities=9% Similarity=0.069 Sum_probs=46.3
Q ss_pred EeecCCcEEEEEcc-hhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHH
Q psy12143 291 YIALDGSIGCLVNG-AGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAE 369 (443)
Q Consensus 291 ~~~~~g~iaiitng-GG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~ 369 (443)
|..|.+++++||.| +|.|-..+-.+...|+.+.- .+-+.+...++.+.+.+. +.+++.+ ..-.++.+.+.+
T Consensus 2 y~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~-----~~~~~~~~~~~~~~i~~~-g~~~~~~--~~Dvt~~~~v~~ 73 (254)
T 4fn4_A 2 YQSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVA-----VELLEDRLNQIVQELRGM-GKEVLGV--KADVSKKKDVEE 73 (254)
T ss_dssp CGGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEE-----EESCHHHHHHHHHHHHHT-TCCEEEE--ECCTTSHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEE-----EECCHHHHHHHHHHHHhc-CCcEEEE--EccCCCHHHHHH
Confidence 56688999999875 48999999999999976421 122344555555555332 2333332 222444444444
Q ss_pred HHHHHHHHc
Q psy12143 370 GIIAAAQEL 378 (443)
Q Consensus 370 ~i~~~~~~~ 378 (443)
.+-++.+++
T Consensus 74 ~~~~~~~~~ 82 (254)
T 4fn4_A 74 FVRRTFETY 82 (254)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 444444443
No 167
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=39.71 E-value=1.3e+02 Score=27.90 Aligned_cols=80 Identities=16% Similarity=0.151 Sum_probs=49.9
Q ss_pred CcEEEEEcchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHH
Q psy12143 296 GSIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAE 369 (443)
Q Consensus 296 g~iaiitngGG~g~------la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~ 369 (443)
++|++++...+... -..+++.++|.+.....-+.++.+.+.-.++++.+++. .+++||+. .|.+|.
T Consensus 181 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~ai~~~-------~d~~A~ 252 (332)
T 2o20_A 181 KKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLER-GATSAVVS-------HDTVAV 252 (332)
T ss_dssp SSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHT-TCCEEEES-------CHHHHH
T ss_pred CeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHhcc-CCCEEEEC-------ChHHHH
Confidence 56999976532211 13467777775533212234566666655666666665 78898851 367888
Q ss_pred HHHHHHHHcCCCCc
Q psy12143 370 GIIAAAQELSLKIP 383 (443)
Q Consensus 370 ~i~~~~~~~~~~kp 383 (443)
++.+++++.+...|
T Consensus 253 g~~~al~~~G~~vP 266 (332)
T 2o20_A 253 GLLSAMMDKGVKVP 266 (332)
T ss_dssp HHHHHHHHTTCCTT
T ss_pred HHHHHHHHcCCCCc
Confidence 99999998765444
No 168
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=39.32 E-value=1.4e+02 Score=28.04 Aligned_cols=79 Identities=18% Similarity=0.124 Sum_probs=48.1
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHHH-HcCCCCcEEEEeCCCCHHHHHH
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAAQ-ELSLKIPIICRLQGTNVDDAKV 398 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~~-~~~~~kpiv~~~~g~~~~~~~~ 398 (443)
--|.|=-| .+.+.+.+-++.+.+ .++|+++++-..|. .+.++- ..+++... ..+.+.||++..++.+..++++
T Consensus 11 vTPf~~dg-iD~~~l~~lv~~li~-~Gv~gl~~~GttGE~~~Ls~~Er-~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~ 87 (291)
T 3a5f_A 11 ITPFTNTG-VDFDKLSELIEWHIK-SKTDAIIVCGTTGEATTMTETER-KETIKFVIDKVNKRIPVIAGTGSNNTAASIA 87 (291)
T ss_dssp CCCBCSSS-BCHHHHHHHHHHHHH-TTCCEEEESSGGGTGGGSCHHHH-HHHHHHHHHHHTTSSCEEEECCCSSHHHHHH
T ss_pred EcCcCCCC-cCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHH-HHHHHHHHHHhCCCCcEEEeCCcccHHHHHH
Confidence 34665557 888889999999886 57999998544332 222222 22333322 2234689998877765556543
Q ss_pred ---HHHHCC
Q psy12143 399 ---LIASAA 404 (443)
Q Consensus 399 ---~L~~~G 404 (443)
..++.|
T Consensus 88 la~~a~~~G 96 (291)
T 3a5f_A 88 MSKWAESIG 96 (291)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcC
Confidence 455666
No 169
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=39.23 E-value=1.5e+02 Score=23.92 Aligned_cols=92 Identities=11% Similarity=0.112 Sum_probs=49.8
Q ss_pred eeecCCCCHHH---HHHHHHHHHcCCCccEEEEEccCC-CCChHHHHHHHHHH---HHHcCCCCcEEEEeCCCCHHHHHH
Q psy12143 326 LDVGGGATAAQ---VKEAFKIITADPKVCAIMVNIFGG-IMRCDVIAEGIIAA---AQELSLKIPIICRLQGTNVDDAKV 398 (443)
Q Consensus 326 vDl~g~~~~~~---~~~al~~ll~dp~vd~vlv~i~~~-~~~~~~~a~~i~~~---~~~~~~~kpiv~~~~g~~~~~~~~ 398 (443)
+.+.|..+... +.+.+.......+++.+++.+.+- .-+. ..+..+... ++..+ .+.+++ |- .++-.+
T Consensus 16 v~l~G~lD~~~a~~l~~~ll~~i~~~~~~~vIlDlsgV~~iDs-~g~~~L~~~~~~~~l~G-~~~~l~---Gi-~p~va~ 89 (123)
T 3zxn_A 16 VAIEETLHDQSVIQFKEELLHNITGVAGKGLVIDISALEVVDE-FVTRVLIEISRLAELLG-LPFVLT---GI-KPAVAI 89 (123)
T ss_dssp EECCCCC-CHHHHHHHHHHHHHHTSSCCSEEEEECTTCSSCCH-HHHHHHHHHHHHHHHHT-CCEEEE---CC-CHHHHH
T ss_pred EEEeEeeCHHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCcccH-HHHHHHHHHHHHHHHCC-CEEEEE---cC-CHHHHH
Confidence 45667777655 333333333455678888877654 3332 333444444 33322 233333 32 245566
Q ss_pred HHHHCCCC---cccCCCHHHHHHHHHHH
Q psy12143 399 LIASAAMK---ILPCDNLDEAARLAVKL 423 (443)
Q Consensus 399 ~L~~~GiP---~~~f~s~e~Av~al~~l 423 (443)
.|...|+- +..|+|.++|++.+.+.
T Consensus 90 ~l~~~G~~l~~i~~~~~l~~Al~~l~~~ 117 (123)
T 3zxn_A 90 TLTEMGLDLRGMATALNLQKGLDKLKNL 117 (123)
T ss_dssp HHHHTTCCSTTSEEESSHHHHHHHHHHH
T ss_pred HHHHhCCCccceEEECCHHHHHHHHHHh
Confidence 77777762 12389999999886644
No 170
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=39.21 E-value=1.1e+02 Score=28.91 Aligned_cols=103 Identities=12% Similarity=0.062 Sum_probs=53.0
Q ss_pred cEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCC--------------CCHHHHHHHHHHHH--cCCCccEEEEEccCC
Q psy12143 297 SIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGG--------------ATAAQVKEAFKIIT--ADPKVCAIMVNIFGG 360 (443)
Q Consensus 297 ~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~--------------~~~~~~~~al~~ll--~dp~vd~vlv~i~~~ 360 (443)
|+|||..||-.|-.-+.++...|....--+|.... .+.+.+.+.++.+. +||++|+|+|..+..
T Consensus 5 rvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~~ 84 (318)
T 3oa2_A 5 NFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPNY 84 (318)
T ss_dssp EEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCGG
T ss_pred EEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCcH
Confidence 68999877667777788888776432111111111 11122222233443 489999999744321
Q ss_pred CCChHHHHHHHHHHHHHcCCCCcEEEE-eCCCCHHHHH---HHHHHCCCCc
Q psy12143 361 IMRCDVIAEGIIAAAQELSLKIPIICR-LQGTNVDDAK---VLIASAAMKI 407 (443)
Q Consensus 361 ~~~~~~~a~~i~~~~~~~~~~kpiv~~-~~g~~~~~~~---~~L~~~GiP~ 407 (443)
.=++-+.++++ ..|+|++= ....+..++. +..++.|+.+
T Consensus 85 -----~H~~~~~~al~---aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~ 127 (318)
T 3oa2_A 85 -----LHYPHIAAGLR---LGCDVICEKPLVPTPEMLDQLAVIERETDKRL 127 (318)
T ss_dssp -----GHHHHHHHHHH---TTCEEEECSSCCSCHHHHHHHHHHHHHHTCCE
T ss_pred -----HHHHHHHHHHH---CCCeEEEECCCcCCHHHHHHHHHHHHHhCCEE
Confidence 11233333333 35777652 2333444443 3445667765
No 171
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=39.08 E-value=73 Score=29.31 Aligned_cols=79 Identities=23% Similarity=0.288 Sum_probs=44.9
Q ss_pred CcEEEEEcchhHHHH------HHHHHHHcCCCCCCeeee-cCCCCHHHHHHHHHHHH-cC---CCccEEEEEccCCCCCh
Q psy12143 296 GSIGCLVNGAGLAMA------TMDIIKLHGGEPANFLDV-GGGATAAQVKEAFKIIT-AD---PKVCAIMVNIFGGIMRC 364 (443)
Q Consensus 296 g~iaiitngGG~g~l------a~D~~~~~G~~~~NPvDl-~g~~~~~~~~~al~~ll-~d---p~vd~vlv~i~~~~~~~ 364 (443)
++|++++...+.... ..+++..+|. ..++.+ .++.+.+...++++.++ +. |.+++|++. .
T Consensus 129 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~--~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ai~~~-------n 199 (306)
T 2vk2_A 129 CNVVELQGTVGASVAIDRKKGFAEAIKNAPN--IKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAH-------N 199 (306)
T ss_dssp EEEEEEECSTTCHHHHHHHHHHHHHTTTCTT--EEEEEEEECTTCHHHHHHHHHHHHHHTTTTTTCCEEEES-------S
T ss_pred CeEEEEEcCCCChhHHHHHHHHHHHHhhCCC--eEEEEeccCCCcHHHHHHHHHHHHHhCCCCCCeeEEEEC-------C
Confidence 468988765332111 1233333332 123332 45666665445555554 44 789999851 3
Q ss_pred HHHHHHHHHHHHHcCCCCc
Q psy12143 365 DVIAEGIIAAAQELSLKIP 383 (443)
Q Consensus 365 ~~~a~~i~~~~~~~~~~kp 383 (443)
+.+|.++++++++.+...|
T Consensus 200 d~~A~g~~~al~~~G~~vP 218 (306)
T 2vk2_A 200 DDMVIGAIQAIKEAGLKPG 218 (306)
T ss_dssp HHHHHHHHHHHHHTTCCBT
T ss_pred chHHHHHHHHHHHcCCCCC
Confidence 6788899999988765444
No 172
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=39.07 E-value=1.2e+02 Score=28.11 Aligned_cols=81 Identities=25% Similarity=0.216 Sum_probs=50.0
Q ss_pred CcEEEEEcch-hHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHH
Q psy12143 296 GSIGCLVNGA-GLAM------ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIIT-ADPKVCAIMVNIFGGIMRCDVI 367 (443)
Q Consensus 296 g~iaiitngG-G~g~------la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll-~dp~vd~vlv~i~~~~~~~~~~ 367 (443)
++|++++... +... -..+++..+|.+.....-..++.+.+.-.++++.++ ..|.+++||+. .|.+
T Consensus 178 ~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~-------nd~~ 250 (332)
T 2hsg_A 178 KNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVG-------TDEM 250 (332)
T ss_dssp SCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEEES-------SHHH
T ss_pred CEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHcCCCCCeEEEEC-------ChHH
Confidence 5699997654 3211 234677777755432222345666665445555554 56789999951 3778
Q ss_pred HHHHHHHHHHcCCCCc
Q psy12143 368 AEGIIAAAQELSLKIP 383 (443)
Q Consensus 368 a~~i~~~~~~~~~~kp 383 (443)
|-++.+++++.+...|
T Consensus 251 A~g~~~al~~~G~~vP 266 (332)
T 2hsg_A 251 ALGVIHGAQDRGLNVP 266 (332)
T ss_dssp HHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHcCCCCC
Confidence 8899999998765434
No 173
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=38.92 E-value=2.1e+02 Score=26.93 Aligned_cols=99 Identities=8% Similarity=0.021 Sum_probs=56.7
Q ss_pred CeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC---CChHHHHHHHHHHHH-HcCCCCcEEEEeCCCCHHHHHH-
Q psy12143 324 NFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI---MRCDVIAEGIIAAAQ-ELSLKIPIICRLQGTNVDDAKV- 398 (443)
Q Consensus 324 NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~---~~~~~~a~~i~~~~~-~~~~~kpiv~~~~g~~~~~~~~- 398 (443)
-|+ =-|+.+.+.+.+-++.+.+ .++|+++++-..|. .+.++- ..+++... ..+.+.||++..++++..++++
T Consensus 11 TPf-~dg~iD~~~l~~lv~~li~-~Gv~gi~v~GttGE~~~Ls~~Er-~~v~~~~~~~~~grvpviaGvg~~~t~~ai~l 87 (297)
T 2rfg_A 11 TPF-INGQVDEKALAGLVDWQIK-HGAHGLVPVGTTGESPTLTEEEH-KRVVALVAEQAQGRVPVIAGAGSNNPVEAVRY 87 (297)
T ss_dssp CCE-ETTEECHHHHHHHHHHHHH-TTCSEEECSSGGGTGGGSCHHHH-HHHHHHHHHHHTTSSCBEEECCCSSHHHHHHH
T ss_pred cCc-CCCCcCHHHHHHHHHHHHH-cCCCEEEECccccchhhCCHHHH-HHHHHHHHHHhCCCCeEEEccCCCCHHHHHHH
Confidence 455 3577888889999998886 48999997544332 222222 22333322 2234689998877765556543
Q ss_pred --HHHHCC-------CCcccCCCHHHHHHHHHHHHH
Q psy12143 399 --LIASAA-------MKILPCDNLDEAARLAVKLSS 425 (443)
Q Consensus 399 --~L~~~G-------iP~~~f~s~e~Av~al~~l~~ 425 (443)
..++.| -|+|.-.+.+..++-+.++++
T Consensus 88 a~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~ 123 (297)
T 2rfg_A 88 AQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHD 123 (297)
T ss_dssp HHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence 445556 255322466555555544443
No 174
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A*
Probab=38.40 E-value=45 Score=33.28 Aligned_cols=25 Identities=16% Similarity=-0.024 Sum_probs=19.0
Q ss_pred cCCcEEEEEcchhHHHHHHHHHHHcC
Q psy12143 294 LDGSIGCLVNGAGLAMATMDIIKLHG 319 (443)
Q Consensus 294 ~~g~iaiitngGG~g~la~D~~~~~G 319 (443)
..-++.+|..|| .|--.+|.+...+
T Consensus 14 ~~~ki~vIGvGg-aG~~ivd~~~~~~ 38 (389)
T 4ei7_A 14 ISLKFGFLGLGM-GGCAIAAECANKE 38 (389)
T ss_dssp CSSCEEEEEEHH-HHHHHHHHHHTCC
T ss_pred cCceEEEEEECC-chHHHHHHHHhcc
Confidence 345799998877 5777889987766
No 175
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=38.38 E-value=2.2e+02 Score=26.17 Aligned_cols=77 Identities=16% Similarity=0.115 Sum_probs=43.9
Q ss_pred ecCCcEEEEEcc-hhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHH
Q psy12143 293 ALDGSIGCLVNG-AGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGI 371 (443)
Q Consensus 293 ~~~g~iaiitng-GG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i 371 (443)
.+.|++++||.+ +|.|-..+-.+.+.|+++ +..+-+.+...++.+.+.+. ..++.. +..-.++.+.+.+.+
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~V-----vi~~~~~~~~~~~~~~l~~~-g~~~~~--~~~Dv~~~~~v~~~~ 77 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAGARV-----ILNDIRATLLAESVDTLTRK-GYDAHG--VAFDVTDELAIEAAF 77 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEE-----EECCSCHHHHHHHHHHHHHT-TCCEEE--CCCCTTCHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEE-----EEEECCHHHHHHHHHHHHhc-CCcEEE--EEeeCCCHHHHHHHH
Confidence 468999999865 589999999999999753 12233444455555555433 233332 122244444444444
Q ss_pred HHHHHH
Q psy12143 372 IAAAQE 377 (443)
Q Consensus 372 ~~~~~~ 377 (443)
.++.++
T Consensus 78 ~~~~~~ 83 (255)
T 4g81_D 78 SKLDAE 83 (255)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 444433
No 176
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=38.25 E-value=36 Score=33.07 Aligned_cols=37 Identities=14% Similarity=0.114 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHCCCCCCC-eeecCCHHHHHHHHHHcC
Q psy12143 36 VHEHVSYTLLKEGGIPVPP-FGVAKTKKEAGEIAKKLN 72 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~-~~~v~s~~ea~~~a~~lg 72 (443)
-+..+..+.|++.|+|+++ .+++.+.+++.+..+.+.
T Consensus 232 ~t~~e~l~~L~~~Gf~v~~~~~~~~~~~ev~~~~~~~~ 269 (318)
T 1b04_A 232 ASHSEALDYLQALGFKVNPERRRCANIDEVIAFVSEWH 269 (318)
T ss_dssp CBHHHHHHHHHHTTCCCCTTCEEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCCcceEeCCHHHHHHHHHHHH
Confidence 5678899999999999985 568999999988877653
No 177
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=37.63 E-value=38 Score=32.41 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=45.1
Q ss_pred CcEEEEEcchhHHHH-----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 296 GSIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 296 g~iaiitngGG~g~l-----a~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
..+++|-.|-=.+.. -.-+|++.|.. .--.++..+.+.+.+.+.++.+-+||+||+|+|..|
T Consensus 34 P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~-~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlP 100 (288)
T 1b0a_A 34 PGLAVVLVGSNPASQIYVASKRKACEEVGFV-SRSYDLPETTSEAELLELIDTLNADNTIDGILVQLP 100 (288)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHHTCE-ECCEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSS
T ss_pred ceEEEEEeCCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEeCC
Confidence 457777665333222 23467888865 344678888898889999999999999999999544
No 178
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=37.48 E-value=1.7e+02 Score=28.38 Aligned_cols=99 Identities=11% Similarity=-0.011 Sum_probs=58.6
Q ss_pred CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC--CChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHH--
Q psy12143 323 ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI--MRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKV-- 398 (443)
Q Consensus 323 ~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~--~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~-- 398 (443)
--|+|=-|+.+.+.+.+-++.+.+ .++|+|+++-..|. ....+--..+++.... .+.||++..++.+..++++
T Consensus 35 vTPF~~dg~ID~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~~~--grvpViaGvg~~st~eai~la 111 (344)
T 2hmc_A 35 MTPCRQDRTPDFDALVRKGKELIA-DGMSAVVYCGSMGDWPLLTDEQRMEGVERLVK--AGIPVIVGTGAVNTASAVAHA 111 (344)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHH-TTCCCEEESSGGGTGGGSCHHHHHHHHHHHHH--TTCCEEEECCCSSHHHHHHHH
T ss_pred eCCCCCCCCcCHHHHHHHHHHHHH-cCCCEEEeCccCcChhhCCHHHHHHHHHHHhC--CCCcEEEecCCCCHHHHHHHH
Confidence 456665688998999999999886 58999998544332 2222222333443222 4689998877765556543
Q ss_pred -HHHHCCC-------CcccC-CCHHHHHHHHHHHH
Q psy12143 399 -LIASAAM-------KILPC-DNLDEAARLAVKLS 424 (443)
Q Consensus 399 -~L~~~Gi-------P~~~f-~s~e~Av~al~~l~ 424 (443)
..++.|. |+|.- .+.+..++-+.+++
T Consensus 112 ~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~IA 146 (344)
T 2hmc_A 112 VHAQKVGAKGLMVIPRVLSRGSVIAAQKAHFKAIL 146 (344)
T ss_dssp HHHHHHTCSEEEECCCCSSSTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEECCCccCCCCCHHHHHHHHHHHH
Confidence 4455562 55322 35555554444443
No 179
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=37.01 E-value=40 Score=32.43 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=44.4
Q ss_pred CcEEEEEcchhHH-H----HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 296 GSIGCLVNGAGLA-M----ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 296 g~iaiitngGG~g-~----la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
..+++|-.|-=.+ . .-.-+|++.|.. .--+++..+.+.+.+.+.++.+-+||+||+|+|..|
T Consensus 36 P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~-~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlP 102 (301)
T 1a4i_A 36 PRLAILQVGNRDDSNLYINVKLKAAEEIGIK-ATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLP 102 (301)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHHTCE-EEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred CEEEEEEeCCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEecc
Confidence 4577766553222 2 223357778865 345678888888889999999999999999999544
No 180
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=36.94 E-value=2.3e+02 Score=25.43 Aligned_cols=81 Identities=11% Similarity=0.054 Sum_probs=49.0
Q ss_pred CcEEEEEcchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHH
Q psy12143 296 GSIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIIT-ADPKVCAIMVNIFGGIMRCDVIA 368 (443)
Q Consensus 296 g~iaiitngGG~g~------la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll-~dp~vd~vlv~i~~~~~~~~~~a 368 (443)
++|++++...+... -..+++.++|.......-..++.+.+...++++.++ +.|.+++|++. .+.+|
T Consensus 128 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~A 200 (288)
T 3gv0_A 128 KRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDGIVSI-------SGSST 200 (288)
T ss_dssp CEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEEES-------CHHHH
T ss_pred CeEEEEcCCcccchHHHHHHHHHHHHHHcCCCcchhheeccccchHHHHHHHHHHHhCCCCCcEEEEc-------CcHHH
Confidence 46999976543221 134566676643222112345556665555555555 56789999851 37788
Q ss_pred HHHHHHHHHcCCCCc
Q psy12143 369 EGIIAAAQELSLKIP 383 (443)
Q Consensus 369 ~~i~~~~~~~~~~kp 383 (443)
.++.+++++.+...|
T Consensus 201 ~g~~~al~~~g~~vP 215 (288)
T 3gv0_A 201 IALVAGFEAAGVKIG 215 (288)
T ss_dssp HHHHHHHHTTTCCTT
T ss_pred HHHHHHHHHcCCCCC
Confidence 899999998765434
No 181
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=36.62 E-value=53 Score=31.33 Aligned_cols=62 Identities=16% Similarity=0.202 Sum_probs=44.8
Q ss_pred CcEEEEEcchhHHHH-----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 296 GSIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 296 g~iaiitngGG~g~l-----a~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
..+++|-.|--.+.. -.-+|++.|.. .-.+.+..+.+.+.+...++.+-+||++++|+|..|
T Consensus 35 P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~-~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlP 101 (285)
T 3l07_A 35 PKLVAIIVGNDPASKTYVASKEKACAQVGID-SQVITLPEHTTESELLELIDQLNNDSSVHAILVQLP 101 (285)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHHTCE-EEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSS
T ss_pred ceEEEEEECCCHHHHHHHHHHHHHHHHcCCe-EEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEcCC
Confidence 456666655443332 33467777754 345667778888889999999999999999999655
No 182
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=36.59 E-value=1.9e+02 Score=26.00 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=24.5
Q ss_pred cCCcEEEEEcc-h-hHHHHHHHHHHHcCCC
Q psy12143 294 LDGSIGCLVNG-A-GLAMATMDIIKLHGGE 321 (443)
Q Consensus 294 ~~g~iaiitng-G-G~g~la~D~~~~~G~~ 321 (443)
+.+++++||.+ | |+|-..+..+...|..
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G~~ 49 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEGAD 49 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTTCE
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCCCE
Confidence 57889999998 6 8999999999999954
No 183
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=36.46 E-value=1.7e+02 Score=26.57 Aligned_cols=120 Identities=9% Similarity=-0.045 Sum_probs=63.6
Q ss_pred CCcEEEEEcchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHH
Q psy12143 295 DGSIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGATAAQ-VKEAFKIITADPKVCAIMVNIFGGIMRCDVI 367 (443)
Q Consensus 295 ~g~iaiitngGG~g~------la~D~~~~~G~~~~NPvDl~g~~~~~~-~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~ 367 (443)
.++|++++..-+... -..+++..+|.+. ++..+..+.+. +..+-+.+.++|++++|++. .+.+
T Consensus 130 ~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~ 199 (297)
T 3rot_A 130 AKRALVLNPQPGHIGLEKRAYGIKTILQDKGIFF---EELDVGTDPNQVQSRVKSYFKIHPETNIIFCL-------TSQA 199 (297)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEE---EEEECCSCHHHHHHHHHHHHHHCTTCCEEEES-------SHHH
T ss_pred CceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCeE---EEeecCCChHHHHHHHHHHHHhCCCCCEEEEc-------CCcc
Confidence 356888875543221 1346777776543 23334444454 44444556678999999851 3678
Q ss_pred HHHHHHHHHHcCCC---CcE-EEEeCCCCHHHHHHHHHHCCCC-cccCCCHHH-HHHHHHHHHHHH
Q psy12143 368 AEGIIAAAQELSLK---IPI-ICRLQGTNVDDAKVLIASAAMK-ILPCDNLDE-AARLAVKLSSIV 427 (443)
Q Consensus 368 a~~i~~~~~~~~~~---kpi-v~~~~g~~~~~~~~~L~~~GiP-~~~f~s~e~-Av~al~~l~~~~ 427 (443)
|.++.+++++.+.. +.| |+.+.+ .......+.. |.+ ..+..++++ +-.++..|.+++
T Consensus 200 A~g~~~al~~~g~~vP~~dv~vig~D~--~~~~~~~i~~-~~~lttv~~~~~~~g~~av~~l~~~i 262 (297)
T 3rot_A 200 LDPLGQMLLHPDRYDFNYQPQVYSFDK--TPNTVSLIHK-KLVNYVMDQQPFLMGYLSITQLVLMN 262 (297)
T ss_dssp HHHHHHHHHSHHHHTCCCCCEEEEECC--CHHHHHHHHT-TSCCEEECCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCccCCCceEEEEeCC--CHHHHHHHHc-CCceEEEecChHHHHHHHHHHHHHHH
Confidence 88888888875432 133 333333 2344444443 432 223445544 333444444444
No 184
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=36.21 E-value=71 Score=30.73 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=39.9
Q ss_pred ecCCcEEEEEcchhHH----HHHHHHHHHcCCCCCC---e---eeecCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q psy12143 293 ALDGSIGCLVNGAGLA----MATMDIIKLHGGEPAN---F---LDVGGGATAAQVKEAFKIITADPKVCAIMVNIFG 359 (443)
Q Consensus 293 ~~~g~iaiitngGG~g----~la~D~~~~~G~~~~N---P---vDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~ 359 (443)
+.+.+|+|++.|++.. -.+...++..|.++.. - -..- ..+.+.=.+-|..++.||++|+|+....|
T Consensus 15 ~~Gd~I~ivaPSs~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~-agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG 90 (311)
T 1zl0_A 15 PIDGRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYL-AGTVEQRLEDLHNAFDMPDITAVWCLRGG 90 (311)
T ss_dssp CCCSEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTB-SSCHHHHHHHHHHHHHSTTEEEEEESCCS
T ss_pred CCcCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEECcccccccccc-CCCHHHHHHHHHHHHhCCCCCEEEEccCC
Confidence 3466799999999863 2345677778854311 0 1112 22333333346666789999999975443
No 185
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=35.58 E-value=2e+02 Score=26.97 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=49.1
Q ss_pred CcEEEEEcchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHH
Q psy12143 296 GSIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGATAAQ-VKEAFKIITADPKVCAIMVNIFGGIMRCDVIA 368 (443)
Q Consensus 296 g~iaiitngGG~g~------la~D~~~~~G~~~~NPvDl~g~~~~~~-~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a 368 (443)
++|++++...+... -..+++.++|.++. .+ ..++.+.+. +..+.+.+...|.+++||+. .|.+|
T Consensus 180 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~gi~~~-~~-~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~-------nD~~A 250 (349)
T 1jye_A 180 QQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPI-AE-REGDWSAMSGFQQTMQMLNEGIVPTAMLVA-------NDQMA 250 (349)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCS-EE-EECCSSHHHHHHHHHHHHHTTCCCSEEEES-------SHHHH
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHcCCCcc-cc-ccCCCChHHHHHHHHHHHhCCCCCCEEEEC-------ChHHH
Confidence 56999975433211 13467777776432 22 345666554 44444455566789999852 37789
Q ss_pred HHHHHHHHHcCCCCc
Q psy12143 369 EGIIAAAQELSLKIP 383 (443)
Q Consensus 369 ~~i~~~~~~~~~~kp 383 (443)
-++++++++.+...|
T Consensus 251 ~g~~~al~~~G~~vP 265 (349)
T 1jye_A 251 LGAMRAITESGLRVG 265 (349)
T ss_dssp HHHHHHHHHTTCCBT
T ss_pred HHHHHHHHHcCCCCC
Confidence 999999998765444
No 186
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=35.51 E-value=52 Score=31.62 Aligned_cols=62 Identities=10% Similarity=0.161 Sum_probs=43.7
Q ss_pred CcEEEEEcchhHHH-----HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 296 GSIGCLVNGAGLAM-----ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 296 g~iaiitngGG~g~-----la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
..+++|-.|--.+- .-.-+|++.|.. .-.+++..+.+.+.+...++.+-+||++++|+|..|
T Consensus 38 P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~-~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlP 104 (300)
T 4a26_A 38 PGLASIIVGQRMDSKKYVQLKHKAAAEVGMA-SFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLP 104 (300)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHTTCE-EEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSC
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCe-EEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEcCC
Confidence 34666655543322 223467777754 345667778888889999999999999999999544
No 187
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=35.24 E-value=54 Score=31.30 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=44.7
Q ss_pred CcEEEEEcchhHHH-----HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 296 GSIGCLVNGAGLAM-----ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 296 g~iaiitngGG~g~-----la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
..+++|-.|--.+. .-.-+|++.|.. .-.+.+..+.+.+.+...++.+-+||++++|+|..|
T Consensus 36 P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~-~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlP 102 (286)
T 4a5o_A 36 PGLAVILVGTDPASQVYVAHKRKDCEEVGFL-SQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLP 102 (286)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHTTCE-EEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSS
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCe-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCC
Confidence 44666665543332 234577777854 345667778888889999999999999999999654
No 188
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=35.20 E-value=1.4e+02 Score=26.87 Aligned_cols=78 Identities=14% Similarity=0.031 Sum_probs=48.7
Q ss_pred CcEEEEEcchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHc--CCCccEEEEEccCCCCChHHH
Q psy12143 296 GSIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITA--DPKVCAIMVNIFGGIMRCDVI 367 (443)
Q Consensus 296 g~iaiitngGG~g~------la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~--dp~vd~vlv~i~~~~~~~~~~ 367 (443)
++|++++...+... -..+++.++|.+.. -+.++.+.+...++++.+++ .|.+++|++. .+.+
T Consensus 119 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~-------~d~~ 188 (277)
T 3cs3_A 119 KKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYE---IIQGDFTEPSGYAAAKKILSQPQTEPVDVFAF-------NDEM 188 (277)
T ss_dssp SCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEE---EEECCSSHHHHHHHHHHHTTSCCCSSEEEEES-------SHHH
T ss_pred ceEEEEeCCccCccHHHHHHHHHHHHHHcCCCee---EEeCCCChhHHHHHHHHHHhcCCCCCcEEEEc-------ChHH
Confidence 56999976543211 12356667775432 23456666655555666655 5889998851 3678
Q ss_pred HHHHHHHHHHcCCCCc
Q psy12143 368 AEGIIAAAQELSLKIP 383 (443)
Q Consensus 368 a~~i~~~~~~~~~~kp 383 (443)
|.++++++++.+...|
T Consensus 189 a~g~~~al~~~g~~vP 204 (277)
T 3cs3_A 189 AIGVYKYVAETNYQMG 204 (277)
T ss_dssp HHHHHHHHTTSSCCBT
T ss_pred HHHHHHHHHHcCCCCC
Confidence 8899999988655444
No 189
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=35.12 E-value=2.3e+02 Score=26.32 Aligned_cols=81 Identities=16% Similarity=0.177 Sum_probs=49.1
Q ss_pred CcEEEEEcchhHHH-----HHHHHHHHcCCCCCCe-eeecCCCCHHHHHHHHH-HHHcCCCccEEEEEccCCCCChHHHH
Q psy12143 296 GSIGCLVNGAGLAM-----ATMDIIKLHGGEPANF-LDVGGGATAAQVKEAFK-IITADPKVCAIMVNIFGGIMRCDVIA 368 (443)
Q Consensus 296 g~iaiitngGG~g~-----la~D~~~~~G~~~~NP-vDl~g~~~~~~~~~al~-~ll~dp~vd~vlv~i~~~~~~~~~~a 368 (443)
++|++++....... -..+++..+|....++ +-..+..+.+.-.++++ .+.+.|.+++||+. .|.+|
T Consensus 179 ~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~-------nD~~A 251 (339)
T 3h5o_A 179 RRIGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLDPQPSSMQMGADMLDRALAERPDCDALFCC-------NDDLA 251 (339)
T ss_dssp CSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHHHHHHHHHHHHHHCTTCCEEEES-------SHHHH
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCChheEecCCCCHHHHHHHHHHHHcCCCCCcEEEEC-------ChHHH
Confidence 46999875432211 1345677777633222 22345666665444444 44566889999851 37889
Q ss_pred HHHHHHHHHcCCCCc
Q psy12143 369 EGIIAAAQELSLKIP 383 (443)
Q Consensus 369 ~~i~~~~~~~~~~kp 383 (443)
-++.+++++.+...|
T Consensus 252 ~g~~~al~~~G~~vP 266 (339)
T 3h5o_A 252 IGALARSQQLGIAVP 266 (339)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcCCCCC
Confidence 999999998765544
No 190
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=34.68 E-value=1.3e+02 Score=28.23 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=50.9
Q ss_pred CcEEEEEcch--hHH-----HHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHH-HHHHcCCCccEEEEEccCCCCChHHH
Q psy12143 296 GSIGCLVNGA--GLA-----MATMDIIKLHGGEPANFLDVGGGATAAQVKEAF-KIITADPKVCAIMVNIFGGIMRCDVI 367 (443)
Q Consensus 296 g~iaiitngG--G~g-----~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al-~~ll~dp~vd~vlv~i~~~~~~~~~~ 367 (443)
++|++++... ... --..+++.++|.......-..++.+.+.-.+++ +.+.+.|.+++||+. .|.+
T Consensus 186 ~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~-------nd~~ 258 (344)
T 3kjx_A 186 RRIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIEDREFYSGGSALAKGREMTQAMLERSPDLDFLYYS-------NDMI 258 (344)
T ss_dssp CSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTTCCEEEES-------SHHH
T ss_pred CeEEEEecCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHhcCCCCCEEEEC-------CHHH
Confidence 4688887653 111 113467777776544333334666766544444 445567899999851 3788
Q ss_pred HHHHHHHHHHcCCCCc
Q psy12143 368 AEGIIAAAQELSLKIP 383 (443)
Q Consensus 368 a~~i~~~~~~~~~~kp 383 (443)
|-++++++++.+...|
T Consensus 259 A~g~~~al~~~g~~vP 274 (344)
T 3kjx_A 259 AAGGLLYLLEQGIDIP 274 (344)
T ss_dssp HHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHcCCCCC
Confidence 9999999998765544
No 191
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=34.59 E-value=2.6e+02 Score=28.69 Aligned_cols=83 Identities=17% Similarity=0.157 Sum_probs=49.0
Q ss_pred CCcEEEEEcc---hhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHH
Q psy12143 295 DGSIGCLVNG---AGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGI 371 (443)
Q Consensus 295 ~g~iaiitng---GG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i 371 (443)
.||..|+-.| -..+...++.+.++|..+.=.-=++|+ .+ ..+.|+++|.+|.|. ++|+ ..+.+.|
T Consensus 189 aGN~VVlKpse~tp~t~~~l~~l~~eaGlP~gvv~vv~g~--~~----~~~~L~~~p~vd~I~--FTGS----~~vG~~i 256 (521)
T 4e4g_A 189 CGNAFILKPSERDPSVPIRLAELMIEAGLPAGILNVVNGD--KG----AVDAILTHPDIAAVS--FVGS----TPIARYV 256 (521)
T ss_dssp TTCEEEEECCTTSTHHHHHHHHHHHHTTCCTTSEEECCCC--HH----HHHHHHTCTTCCEEE--EESC----HHHHHHH
T ss_pred cCCEEEEECCCcchHHHHHHHHHHHHhCCCcCeEEEEeCC--hH----HHHHHHhCCCcCEEE--EECC----HHHHHHH
Confidence 4555555333 234667788898888654322222342 22 236778999999877 3443 3556666
Q ss_pred HHHHHHcCCCCcEEEEeCCC
Q psy12143 372 IAAAQELSLKIPIICRLQGT 391 (443)
Q Consensus 372 ~~~~~~~~~~kpiv~~~~g~ 391 (443)
.+.+.+ +-||++.-++|.
T Consensus 257 ~~~aa~--~lkpv~lELGGk 274 (521)
T 4e4g_A 257 YGTAAM--NGKRAQCFGGAK 274 (521)
T ss_dssp HHHHHH--TTCEEEEECCCC
T ss_pred HHHHhh--cCCCeeecCCCC
Confidence 666665 357776655553
No 192
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=34.37 E-value=1.8e+02 Score=26.20 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=47.1
Q ss_pred CcEEEEEcchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHH--HH-cCCCccEEEEEccCCCCChHH
Q psy12143 296 GSIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKI--IT-ADPKVCAIMVNIFGGIMRCDV 366 (443)
Q Consensus 296 g~iaiitngGG~g~------la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~--ll-~dp~vd~vlv~i~~~~~~~~~ 366 (443)
++|++++...+... -..+++.++|.+.. . +.++.+.+.-.++++. ++ +.|.+++||+. .+.
T Consensus 125 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~-~--~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~ 194 (285)
T 3c3k_A 125 KRIALINHDLAYQYAQHRESGYLNRLKFHGLDYS-R--ISYAENLDYMAGKLATFSLLKSAVKPDAIFAI-------SDV 194 (285)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCC-E--EEECSSSSHHHHHHHHHHHHSSSSCCSEEEES-------SHH
T ss_pred CeEEEEeCCCccccHHHHHHHHHHHHHHcCCCce-E--eecCCChHHHHHHHHHHHHHcCCCCCeEEEEC-------CHH
Confidence 56999976543211 13466777776543 2 2344444443444554 44 45789999851 367
Q ss_pred HHHHHHHHHHHcCCCCc
Q psy12143 367 IAEGIIAAAQELSLKIP 383 (443)
Q Consensus 367 ~a~~i~~~~~~~~~~kp 383 (443)
+|.++++++++.+...|
T Consensus 195 ~A~g~~~al~~~g~~vP 211 (285)
T 3c3k_A 195 LAAGAIQALTESGLSIP 211 (285)
T ss_dssp HHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 88899999988765444
No 193
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=34.28 E-value=78 Score=29.71 Aligned_cols=65 Identities=12% Similarity=0.313 Sum_probs=44.0
Q ss_pred ecCCcEEEEEcc-hhHHHHHHHHHHHcCCCC------------------CCeeeecCCCCHH-HHHHHHHHHHc-CCCcc
Q psy12143 293 ALDGSIGCLVNG-AGLAMATMDIIKLHGGEP------------------ANFLDVGGGATAA-QVKEAFKIITA-DPKVC 351 (443)
Q Consensus 293 ~~~g~iaiitng-GG~g~la~D~~~~~G~~~------------------~NPvDl~g~~~~~-~~~~al~~ll~-dp~vd 351 (443)
+|.|++++||.+ +|.|-..+-.+...|+++ .+-+-+..+.+.. ...+.++.+.+ -..+|
T Consensus 26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD 105 (273)
T 4fgs_A 26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRID 105 (273)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEE
T ss_pred hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 478999999875 589999999999999542 2334444555543 46666666543 36788
Q ss_pred EEEEEc
Q psy12143 352 AIMVNI 357 (443)
Q Consensus 352 ~vlv~i 357 (443)
.++-|.
T Consensus 106 iLVNNA 111 (273)
T 4fgs_A 106 VLFVNA 111 (273)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 766553
No 194
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Probab=34.16 E-value=2.4e+02 Score=28.88 Aligned_cols=83 Identities=17% Similarity=0.156 Sum_probs=48.0
Q ss_pred CCcEEEEEcc---hhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHH
Q psy12143 295 DGSIGCLVNG---AGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGI 371 (443)
Q Consensus 295 ~g~iaiitng---GG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i 371 (443)
.||..|+-.| -..+...++++.++|..+.-.-=++|+.. .-+.|.++|.+|.|. ++|+ ..+.+.|
T Consensus 177 aGN~VVlKps~~tp~t~~~l~~ll~eaGlP~gvv~vv~g~~~------~g~~L~~~p~vd~I~--FTGS----~~~G~~i 244 (517)
T 3r31_A 177 AGNAMVFKPSENTPLGALKIAEILIEAGLPKGLFNVIQGDRD------TGPLLVNHPDVAKVS--LTGS----VPTGRKV 244 (517)
T ss_dssp TTCEEEEECCTTSCSHHHHHHHHHHHTTCCTTSEEECCCCTT------HHHHHHTCTTEEEEE--EESC----HHHHHHH
T ss_pred cCCEEEEEcCcccHHHHHHHHHHHHHhCcCcccEEEEECCHH------HHHHHHhCCCcCEEe--ccCC----HHHHHHH
Confidence 3554444322 23456777888888765432222344221 345677899999877 3443 3556677
Q ss_pred HHHHHHcCCCCcEEEEeCCC
Q psy12143 372 IAAAQELSLKIPIICRLQGT 391 (443)
Q Consensus 372 ~~~~~~~~~~kpiv~~~~g~ 391 (443)
.+.+.+ +-||++.-++|.
T Consensus 245 ~~~aa~--~lk~v~lElGGk 262 (517)
T 3r31_A 245 AAAAAG--HLKHVTMELGGK 262 (517)
T ss_dssp HHHHHH--TTCEEEEECCCC
T ss_pred HHHhhc--CCCcEEEEcCCc
Confidence 776665 457776655554
No 195
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=33.96 E-value=1.9e+02 Score=26.94 Aligned_cols=76 Identities=18% Similarity=0.297 Sum_probs=48.6
Q ss_pred CcEEEEEcchhHHH------HHHHHHHHcCCCCCCeeeec-CCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHH
Q psy12143 296 GSIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVG-GGATAAQVKEAFKIIT-ADPKVCAIMVNIFGGIMRCDVI 367 (443)
Q Consensus 296 g~iaiitngGG~g~------la~D~~~~~G~~~~NPvDl~-g~~~~~~~~~al~~ll-~dp~vd~vlv~i~~~~~~~~~~ 367 (443)
++|++++...+... -..+++..+|.. ..+. ++.+.+.-.++++.++ +.| +++||+. .|.+
T Consensus 175 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~----~~~~~~~~~~~~~~~~~~~ll~~~~-~~ai~~~-------nd~~ 242 (333)
T 3jvd_A 175 MNIAALVGEESLSTTQERMRGISHAASIYGAE----VTFHFGHYSVESGEEMAQVVFNNGL-PDALIVA-------SPRL 242 (333)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE----EEEEECCSSHHHHHHHHHHHHHTCC-CSEEEEC-------CHHH
T ss_pred CeEEEEeCCCCCccHHHHHHHHHHHHHHCCCC----EEEecCCCCHHHHHHHHHHHhcCCC-CcEEEEC-------CHHH
Confidence 56999987643321 134667777654 3333 6667666445554444 556 9999951 3788
Q ss_pred HHHHHHHHHHcCCCCc
Q psy12143 368 AEGIIAAAQELSLKIP 383 (443)
Q Consensus 368 a~~i~~~~~~~~~~kp 383 (443)
|-++.+++++.+...|
T Consensus 243 A~g~~~al~~~G~~vP 258 (333)
T 3jvd_A 243 MAGVMRAFTRLNVRVP 258 (333)
T ss_dssp HHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHcCCCCC
Confidence 8999999998765444
No 196
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=33.83 E-value=1.1e+02 Score=27.71 Aligned_cols=81 Identities=16% Similarity=0.141 Sum_probs=48.1
Q ss_pred CcEEEEEcchhH------HHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHH
Q psy12143 296 GSIGCLVNGAGL------AMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAE 369 (443)
Q Consensus 296 g~iaiitngGG~------g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~ 369 (443)
++|++++...+. ---..+++..+|.+.....-..++.+.+...++++.+++.|.+++|++. .+.+|.
T Consensus 126 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~~~-------~d~~a~ 198 (290)
T 3clk_A 126 RQIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIKPGDYSYTSGEQAMKAFGKNTDLTGIIAA-------SDMTAI 198 (290)
T ss_dssp CSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHCTTCCCSEEEES-------SHHHHH
T ss_pred CEEEEEeCCCCCcchHHHHHHHHHHHHHcCCCCCcceEEcCCCChhhHHHHHHHHhccCCCcEEEEC-------CcHHHH
Confidence 457777543211 1113466777775543222234566666555555555557788998851 367888
Q ss_pred HHHHHHHHcCCCCc
Q psy12143 370 GIIAAAQELSLKIP 383 (443)
Q Consensus 370 ~i~~~~~~~~~~kp 383 (443)
++++++++.+...|
T Consensus 199 g~~~al~~~g~~vP 212 (290)
T 3clk_A 199 GILNQASSFGIEVP 212 (290)
T ss_dssp HHHHHHHHTTCCTT
T ss_pred HHHHHHHHcCCCCC
Confidence 99999988765434
No 197
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=33.59 E-value=36 Score=35.88 Aligned_cols=56 Identities=23% Similarity=0.332 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHcCCCccEEEEE--ccCCC-CChHHHHHHHHHHHHHcCCCCcEEEEeC
Q psy12143 331 GATAAQVKEAFKIITADPKVCAIMVN--IFGGI-MRCDVIAEGIIAAAQELSLKIPIICRLQ 389 (443)
Q Consensus 331 ~~~~~~~~~al~~ll~dp~vd~vlv~--i~~~~-~~~~~~a~~i~~~~~~~~~~kpiv~~~~ 389 (443)
....+.+.++++.+.+||++++|++. .+|+. .....+.+.|.+ .++ .+|||++...
T Consensus 321 ~~~~~~l~~~L~~a~~d~~vkaVVL~i~spGG~~~~~~~i~~~i~~-l~~--~~kPVia~v~ 379 (593)
T 3bf0_A 321 NVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAA-ARA--AGKPVVVSMG 379 (593)
T ss_dssp SEEHHHHHHHHHHHHHCTTEEEEEEEEEEEEECHHHHHHHHHHHHH-HHH--TTCCEEEEEE
T ss_pred hhHHHHHHHHHHHHHhCCCCCEEEEEecCCCCCHHHHHHHHHHHHH-HHh--CCCCEEEEEC
Confidence 34567789999999999999999984 34442 222333343333 333 4799986543
No 198
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=33.56 E-value=59 Score=31.01 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=44.6
Q ss_pred CcEEEEEcchhHHH-----HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 296 GSIGCLVNGAGLAM-----ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 296 g~iaiitngGG~g~-----la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
..+++|-.|--.+. .-.-+|++.|.. .-.+.+..+.+.+.+...++.+-+||++++|+|..|
T Consensus 34 P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~-~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlP 100 (285)
T 3p2o_A 34 SCLAVILVGDNPASQTYVKSKAKACEECGIK-SLVYHLNENITQNELLALINTLNHDDSVHGILVQLP 100 (285)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHHTCE-EEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSC
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCe-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEecCC
Confidence 45777666543332 233467777754 345667778888889999999999999999999554
No 199
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=32.82 E-value=1e+02 Score=24.87 Aligned_cols=81 Identities=12% Similarity=0.052 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcC-C-CccEEEEEccCC--CCCh-HHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCC---
Q psy12143 334 AAQVKEAFKIITAD-P-KVCAIMVNIFGG--IMRC-DVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAM--- 405 (443)
Q Consensus 334 ~~~~~~al~~ll~d-p-~vd~vlv~i~~~--~~~~-~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~Gi--- 405 (443)
.+.+.+.+..+..+ | ..+.|++.+.+- +..+ -.+...+.+.+++ .+..++.+-.. +...+.|+..|+
T Consensus 30 a~~~~~~l~~~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~--~g~~l~l~~~~---~~v~~~l~~~gl~~~ 104 (130)
T 2kln_A 30 AEDFRRRALTVVDQDPGQVEWFVLNAESNVEVDLTALDALDQLRTELLR--RGIVFAMARVK---QDLRESLRAASLLDK 104 (130)
T ss_dssp HHHHHHHHHHHTTSSSSCCEEEEEECSCCSSSBCSTTTHHHHHHHHHHT--TTEEEEEECCS---SHHHHHHHHCTTHHH
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEECCCCChhhHHHHHHHHHHHHHHHH--CCCEEEEEcCC---HHHHHHHHHcCChhh
Confidence 45577777666544 2 667777765432 1111 1222333333333 24444332222 245667777775
Q ss_pred ----CcccCCCHHHHHHHHH
Q psy12143 406 ----KILPCDNLDEAARLAV 421 (443)
Q Consensus 406 ----P~~~f~s~e~Av~al~ 421 (443)
++ |+|.++|++.+-
T Consensus 105 ~~~~~i--~~t~~~Al~~~~ 122 (130)
T 2kln_A 105 IGEDHI--FMTLPTAVQAFR 122 (130)
T ss_dssp HCTTEE--ESCHHHHHHHHT
T ss_pred cCccee--ECCHHHHHHHHH
Confidence 45 999999998753
No 200
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=32.14 E-value=75 Score=29.91 Aligned_cols=97 Identities=13% Similarity=0.017 Sum_probs=57.8
Q ss_pred CeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC--CChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHH---
Q psy12143 324 NFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI--MRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKV--- 398 (443)
Q Consensus 324 NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~--~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~--- 398 (443)
-|.|=-|+.+.+.+.+-++.+.+. +|+++++-..|. ..+.+=-..+++...+ +.||++..++.+..++++
T Consensus 8 TPf~~dg~iD~~~l~~lv~~li~~--v~gl~v~GttGE~~~Ls~~Er~~v~~~~~~---rvpviaGvg~~~t~~ai~la~ 82 (283)
T 2pcq_A 8 TPFDREGRLDEEAFRELAQALEPL--VDGLLVYGSNGEGVHLTPEERARGLRALRP---RKPFLVGLMEETLPQAEGALL 82 (283)
T ss_dssp CCBCTTCCBCHHHHHHHHHHHGGG--SSCCEETCTTTTGGGSCHHHHHHHHHTCCC---SSCCEEEECCSSHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHHhh--CCEEEECCcCcCchhcCHHHHHHHHHHHHh---CCcEEEeCCCCCHHHHHHHHH
Confidence 455555788888899999999886 999998544442 2222222344444433 689998877765556543
Q ss_pred HHHHCCC-------CcccCC-CHHHHHHHHHHHHH
Q psy12143 399 LIASAAM-------KILPCD-NLDEAARLAVKLSS 425 (443)
Q Consensus 399 ~L~~~Gi-------P~~~f~-s~e~Av~al~~l~~ 425 (443)
..++.|. |+|.-. +.+..++-+.++++
T Consensus 83 ~A~~~Gadavlv~~P~y~~~~~~~~l~~~f~~va~ 117 (283)
T 2pcq_A 83 EAKAAGAMALLATPPRYYHGSLGAGLLRYYEALAE 117 (283)
T ss_dssp HHHHHTCSEEEECCCCTTGGGTTTHHHHHHHHHHH
T ss_pred HHHhcCCCEEEecCCcCCCCCCHHHHHHHHHHHhc
Confidence 4455562 552112 44555554444443
No 201
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, tetramer; 2.00A {Sinorhizobium meliloti}
Probab=31.93 E-value=2.2e+02 Score=29.32 Aligned_cols=84 Identities=18% Similarity=0.186 Sum_probs=48.0
Q ss_pred CCcEEEEEcc---hhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHH
Q psy12143 295 DGSIGCLVNG---AGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGI 371 (443)
Q Consensus 295 ~g~iaiitng---GG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i 371 (443)
.||..|+-.| -..+...++++.++|..+.-.-=++|... .+-+.|.++|.+|.|. ++|+ ..+.+.|
T Consensus 188 aGN~VVlKps~~tp~t~~~l~~l~~eaGlP~gvv~vv~g~~~-----~~g~~L~~~p~vd~I~--FTGS----~~~G~~i 256 (528)
T 3u4j_A 188 SGCTVVLKPSEFTSGTSIRLAELAREAGIPDGVFNVVTGYGD-----PAGQVLAEDPNVDMVA--FTGS----VRVGTKL 256 (528)
T ss_dssp TTCEEEEECCTTCCHHHHHHHHHHHHHTCCTTSEEECCCSST-----THHHHHHHCTTCCEEE--EESC----HHHHHHH
T ss_pred cCCeEEEEcCCccHHHHHHHHHHHHHhCCCCCeEEEEeCCcH-----HHHHHHHhCCCcCEEE--EeCC----HHHHHHH
Confidence 4555555333 23466777888888865432222334221 1345667899999877 3443 3556677
Q ss_pred HHHHHHcCCCCcEEEEeCCC
Q psy12143 372 IAAAQELSLKIPIICRLQGT 391 (443)
Q Consensus 372 ~~~~~~~~~~kpiv~~~~g~ 391 (443)
.+.+.+ .-||++.-++|.
T Consensus 257 ~~~aa~--~lk~v~lELGGk 274 (528)
T 3u4j_A 257 GEIAAR--TVKRVGLELGGK 274 (528)
T ss_dssp HHHHHT--TTCEEEEECCCC
T ss_pred HHHHHh--cCCceEEecCCC
Confidence 666665 457776655553
No 202
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=31.56 E-value=57 Score=31.69 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHCCCCCCC-eeecCCHHHHHHHHHHc
Q psy12143 36 VHEHVSYTLLKEGGIPVPP-FGVAKTKKEAGEIAKKL 71 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~-~~~v~s~~ea~~~a~~l 71 (443)
-+..+..+.|++.|+|+++ .+.+.+.+|+.+..+.+
T Consensus 236 ~t~~e~l~~L~~~Gf~v~~~~~~~~~~~ev~~~~~~~ 272 (322)
T 3uq8_A 236 TTHYARLQWLKSIGIPVNPEIRLCNGADEVLGFYRDI 272 (322)
T ss_dssp SBHHHHHHHHHHTTCCCCTTCEEEESHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCCCcEEeCCHHHHHHHHHHH
Confidence 4678899999999999986 57889999998887765
No 203
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=30.57 E-value=1.3e+02 Score=27.82 Aligned_cols=111 Identities=14% Similarity=0.152 Sum_probs=57.7
Q ss_pred cEEEEEcchhHHHHHHHHHHHc-CCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHH
Q psy12143 297 SIGCLVNGAGLAMATMDIIKLH-GGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAA 375 (443)
Q Consensus 297 ~iaiitngGG~g~la~D~~~~~-G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~ 375 (443)
+|+|+...|.+|-.....+... |.+..--+|...+ ++.++. .+.|.++ .+.... .. ....+.+
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~d---------l~~~~~-~~~DvvI-DfT~p~----a~-~~~~~~a 65 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDP---------LSLLTD-GNTEVVI-DFTHPD----VV-MGNLEFL 65 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCC---------THHHHH-TTCCEEE-ECSCTT----TH-HHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCC---------HHHHhc-cCCcEEE-EccChH----HH-HHHHHHH
Confidence 5788877788999999998765 4332222232211 222222 2467544 232221 12 2333344
Q ss_pred HHcCCCCcEEEEeCCCCHHHHHHHHHH----C-CCCcccCCCHHHHHHHHHHHHHH
Q psy12143 376 QELSLKIPIICRLQGTNVDDAKVLIAS----A-AMKILPCDNLDEAARLAVKLSSI 426 (443)
Q Consensus 376 ~~~~~~kpiv~~~~g~~~~~~~~~L~~----~-GiP~~~f~s~e~Av~al~~l~~~ 426 (443)
.+ .++|+|+...|-.. +..+.|++ . ++|+..-+++.-.+..+.+|++.
T Consensus 66 ~~--~g~~~VigTTG~~~-e~~~~l~~aa~~~~~~~vv~a~N~siGv~ll~~l~~~ 118 (245)
T 1p9l_A 66 ID--NGIHAVVGTTGFTA-ERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFAKQ 118 (245)
T ss_dssp HH--TTCEEEECCCCCCH-HHHHHHHHHHHTSTTCEEEECSCCCHHHHHHHHHHHH
T ss_pred HH--cCCCEEEcCCCCCH-HHHHHHHHHHHhCCCCCEEEECCccHHHHHHHHHHHH
Confidence 44 47898876555433 22233322 3 88874445555556666666553
No 204
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=30.37 E-value=3.5e+02 Score=26.69 Aligned_cols=110 Identities=14% Similarity=0.073 Sum_probs=64.1
Q ss_pred cEEEEEcchhHHHHHHHHHHHcCCCC----------------CCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCC
Q psy12143 297 SIGCLVNGAGLAMATMDIIKLHGGEP----------------ANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGG 360 (443)
Q Consensus 297 ~iaiitngGG~g~la~D~~~~~G~~~----------------~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~ 360 (443)
+|.|+ ..|-.|-..+..+...|..+ .-++ +.|+++........ .-.+.|+|++.+.
T Consensus 6 ~viIi-G~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~v-i~GDat~~~~L~~a----gi~~A~~viv~~~-- 77 (413)
T 3l9w_A 6 RVIIA-GFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKV-FYGDATRMDLLESA----GAAKAEVLINAID-- 77 (413)
T ss_dssp SEEEE-CCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCC-EESCTTCHHHHHHT----TTTTCSEEEECCS--
T ss_pred eEEEE-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeE-EEcCCCCHHHHHhc----CCCccCEEEECCC--
Confidence 35554 45779999999999998431 1122 45666654322221 1235677776332
Q ss_pred CCChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcccCCCHHHHHHHH
Q psy12143 361 IMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLA 420 (443)
Q Consensus 361 ~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al 420 (443)
.+.....++..+++.+++.+|+++.... +....|.+.|+-.++.++.+.+.+-.
T Consensus 78 ---~~~~n~~i~~~ar~~~p~~~Iiara~~~---~~~~~L~~~Gad~Vi~~~~~~a~~la 131 (413)
T 3l9w_A 78 ---DPQTNLQLTEMVKEHFPHLQIIARARDV---DHYIRLRQAGVEKPERETFEGALKTG 131 (413)
T ss_dssp ---SHHHHHHHHHHHHHHCTTCEEEEEESSH---HHHHHHHHTTCSSCEETTHHHHHHHH
T ss_pred ---ChHHHHHHHHHHHHhCCCCeEEEEECCH---HHHHHHHHCCCCEEECccHHHHHHHH
Confidence 2444556666677765566788876653 34456777787654455555555433
No 205
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=30.11 E-value=1.1e+02 Score=26.42 Aligned_cols=117 Identities=10% Similarity=0.041 Sum_probs=56.0
Q ss_pred CcEEEEEcchhHHHHH--HHHHHHcCCC--------------CCCe-eeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 296 GSIGCLVNGAGLAMAT--MDIIKLHGGE--------------PANF-LDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 296 g~iaiitngGG~g~la--~D~~~~~G~~--------------~~NP-vDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
..+.++|.||. |+|. ++.+.+.|+. ..|+ ++..-....-+-++.+=.-++ |++++ ++
T Consensus 32 ~g~~lV~Ggg~-GiM~aa~~gAl~~gG~tiGV~~~~~~p~e~~~~~~~~~~~~~~~f~~Rk~~~~~~s----da~iv-lp 105 (171)
T 1weh_A 32 EGFGLACGGYQ-GGMEALARGVKAKGGLVVGVTAPAFFPERRGPNPFVDLELPAATLPQRIGRLLDLG----AGYLA-LP 105 (171)
T ss_dssp TTEEEEECCSS-THHHHHHHHHHHTTCCEEECCCGGGCTTSCSSCTTCSEECCCSSHHHHHHHHHHHE----EEEEE-CS
T ss_pred CCCEEEeCChh-hHHHHHHHHHHHcCCcEEEEeccccCcccccccCCCceeeecCCHHHHHHHHHHhC----CEEEE-eC
Confidence 35888877764 7764 5666667743 1244 221111111222333322233 56555 67
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHH----HH-HHHHHHCCCCcccCCCHHHHHHHHHH
Q psy12143 359 GGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVD----DA-KVLIASAAMKILPCDNLDEAARLAVK 422 (443)
Q Consensus 359 ~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~----~~-~~~L~~~GiP~~~f~s~e~Av~al~~ 422 (443)
++....+++.+.+.-..-...++|| +..- +-... ++ .+.-...-+-+ .+||+++++.+..
T Consensus 106 GG~GTl~El~e~lt~~q~g~~~~kP-vll~-g~~~~l~~~~gfi~~~~~~~~~~--~~~~~e~~~~l~~ 170 (171)
T 1weh_A 106 GGVGTLAELVLAWNLLYLRRGVGRP-LAVD-PYWLGLLKAHGEIAPEDVGLLRV--VADEEDLRRFLRS 170 (171)
T ss_dssp CCHHHHHHHHHHHHHHHTCSSCSCC-EEEC-GGGGGTCCCBTTBCHHHHTTSEE--CCSHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHHhCccCCCe-EEEC-cchhhhHhhcCCCChhhcCeEEE--eCCHHHHHHHHHh
Confidence 7754467777765433211114699 5432 21100 00 00000112333 8999999987753
No 206
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=29.88 E-value=72 Score=29.07 Aligned_cols=90 Identities=8% Similarity=-0.017 Sum_probs=47.8
Q ss_pred cCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcc
Q psy12143 329 GGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKIL 408 (443)
Q Consensus 329 ~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~ 408 (443)
.++.+.+...++++.+++.|++++ |+. .+.+|.++++++++.+....|-+. +....+...+.+.+..+...
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~~~~a-i~~-------~d~~a~g~~~al~~~g~~~di~vv-g~d~~p~~~~~i~~g~~~~~ 244 (304)
T 3o1i_D 174 WADNDKELQRNLVQRVIDMGNIDY-IVG-------SAVAIEAAISELRSADKTHDIGLV-SVYLSHGVYRGLLRNKVLFA 244 (304)
T ss_dssp CCCSCHHHHHHHHHHHHHHSCCSE-EEE-------CHHHHHHHHHHHTTTTCGGGSEEB-CSSCCHHHHHHHTTTSCCBC
T ss_pred cCCCcHHHHHHHHHHHHcCCCCCE-EEe-------cCcchHHHHHHHHhcCCCCCeEEE-EeCCCHHHHHHHHcCcceEE
Confidence 455565654444444448899999 641 367888999999886542122221 11223455556655444332
Q ss_pred cCCCHH-HHHHHHHHHHHHH
Q psy12143 409 PCDNLD-EAARLAVKLSSIV 427 (443)
Q Consensus 409 ~f~s~e-~Av~al~~l~~~~ 427 (443)
....|. -+-.++..|.+++
T Consensus 245 ~~~~~~~~g~~av~~l~~~i 264 (304)
T 3o1i_D 245 PTDKMVQQGRLSVMQAAHYL 264 (304)
T ss_dssp CBCCHHHHHHHHHHHHHHHH
T ss_pred EecCHHHHHHHHHHHHHHHH
Confidence 355553 3333444444444
No 207
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=29.88 E-value=1.2e+02 Score=27.46 Aligned_cols=81 Identities=16% Similarity=0.156 Sum_probs=49.2
Q ss_pred CcEEEEEcchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHH-HcCCCccEEEEEccCCCCChHHHH
Q psy12143 296 GSIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKII-TADPKVCAIMVNIFGGIMRCDVIA 368 (443)
Q Consensus 296 g~iaiitngGG~g~------la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~l-l~dp~vd~vlv~i~~~~~~~~~~a 368 (443)
++|++++...+... -..+++.++|.......-..+..+.+...++++.+ .+.|.+++|++. .+.+|
T Consensus 128 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a 200 (289)
T 3g85_A 128 KSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALFCN-------SDSIA 200 (289)
T ss_dssp CBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEEES-------SHHHH
T ss_pred CEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEEEc-------CCHHH
Confidence 46888876543211 13456777775433222234566666544444444 456889999851 37888
Q ss_pred HHHHHHHHHcCCCCc
Q psy12143 369 EGIIAAAQELSLKIP 383 (443)
Q Consensus 369 ~~i~~~~~~~~~~kp 383 (443)
.++.+++++.+...|
T Consensus 201 ~g~~~al~~~g~~vP 215 (289)
T 3g85_A 201 LGVISVLNKRQISIP 215 (289)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcCCCCC
Confidence 999999998765444
No 208
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=29.66 E-value=63 Score=31.30 Aligned_cols=36 Identities=11% Similarity=-0.007 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHCCCCCCC-eeecCCHHHHHHHHHHc
Q psy12143 36 VHEHVSYTLLKEGGIPVPP-FGVAKTKKEAGEIAKKL 71 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~-~~~v~s~~ea~~~a~~l 71 (443)
-+..+..+.|++.|+|+.+ ..++.+.+|+.+..+.+
T Consensus 230 ~t~~e~l~~L~~~GF~v~~~~~~~~~~~ev~~~~~~~ 266 (318)
T 3jsl_A 230 RSQSEALDELDKLGFTTNKNRARVNNIDGVLEYIEKW 266 (318)
T ss_dssp SBHHHHHHHHHHHTCCCCTTCEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCcCCcceEeCCHHHHHHHHHHH
Confidence 4677889999999999966 57889999988877665
No 209
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=29.44 E-value=1.6e+02 Score=26.96 Aligned_cols=47 Identities=26% Similarity=0.325 Sum_probs=29.7
Q ss_pred HHHHHHHHHHcCCCccEEEE--EccCCCCChHHHHHHHHHHHHHcCCCCcEEEEe
Q psy12143 336 QVKEAFKIITADPKVCAIMV--NIFGGIMRCDVIAEGIIAAAQELSLKIPIICRL 388 (443)
Q Consensus 336 ~~~~al~~ll~dp~vd~vlv--~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~ 388 (443)
.+.++++.+.+ ++++.|++ +.+|+. ..-...|.+..+. .+|||++..
T Consensus 26 ~l~~~l~~a~~-~~~~~Ivl~inspGG~---v~~~~~i~~~i~~--~~~PVia~v 74 (230)
T 3viv_A 26 QFDRYITIAEQ-DNAEAIIIELDTPGGR---ADAMMNIVQRIQQ--SKIPVIIYV 74 (230)
T ss_dssp HHHHHHHHHHH-TTCSEEEEEEEBSCEE---HHHHHHHHHHHHT--CSSCEEEEE
T ss_pred HHHHHHHHHhc-CCCCEEEEEEeCCCcC---HHHHHHHHHHHHh--CCCCEEEEE
Confidence 35667777655 46888877 556552 1223456665665 689999877
No 210
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=29.32 E-value=4.6e+02 Score=26.54 Aligned_cols=83 Identities=16% Similarity=0.166 Sum_probs=48.6
Q ss_pred CCcEEEEEcch---hHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHH
Q psy12143 295 DGSIGCLVNGA---GLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGI 371 (443)
Q Consensus 295 ~g~iaiitngG---G~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i 371 (443)
.||..|+-.|- -.+...++.+.++|..+.-.-=+.|.. ..-+.+.++|.+|.|. ++|+ ..+.+.|
T Consensus 182 aGN~VVlKps~~tp~ta~~l~~l~~~aGlP~gvv~vv~g~~------~~g~~L~~~p~v~~V~--FTGS----~~~G~~i 249 (503)
T 1a4s_A 182 CGNAVVFKPSPMTPVTGVILAEIFHEAGVPVGLVNVVQGGA------ETGSLLCHHPNVAKVS--FTGS----VPTGKKV 249 (503)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHTTCCTTSEEECCCSH------HHHHHHHHCTTCCEEE--EESC----HHHHHHH
T ss_pred cCCEEEEECCCCChHHHHHHHHHHHHhCCCcCeEEEEecCc------hHHHHHHhCCCcCEEE--EeCC----HHHHHHH
Confidence 45555553332 356677888888886543221123321 2456678999999887 3443 3556667
Q ss_pred HHHHHHcCCCCcEEEEeCCC
Q psy12143 372 IAAAQELSLKIPIICRLQGT 391 (443)
Q Consensus 372 ~~~~~~~~~~kpiv~~~~g~ 391 (443)
.+.+.+ +.||++.-++|.
T Consensus 250 ~~~aa~--~~~~v~lELGGk 267 (503)
T 1a4s_A 250 MEMSAK--TVKHVTLELGGK 267 (503)
T ss_dssp HHHHHT--TTCEEEEECCCC
T ss_pred HHHhhh--cCCceEEecCCc
Confidence 666655 457777665554
No 211
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=29.17 E-value=45 Score=32.51 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHCCCCCCC-eeecCCHHHHHHHHHHcC
Q psy12143 36 VHEHVSYTLLKEGGIPVPP-FGVAKTKKEAGEIAKKLN 72 (443)
Q Consensus 36 L~e~~ak~lL~~~GIpv~~-~~~v~s~~ea~~~a~~lg 72 (443)
-+..+..+.|++.|+|+++ .+++++.+++.++.+.++
T Consensus 247 ~t~~e~l~~L~~~Gf~v~~~~~~~~~~~ev~~~~~~~~ 284 (328)
T 1zau_A 247 ATLHQAYLALRAWGLPVSEHTTLATDLAGVRERIDYWG 284 (328)
T ss_dssp SBHHHHHHHHHTTTCCCCCCCCCBCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHcCCCCCCceEEeCCHHHHHHHHHHHH
Confidence 4678899999999999965 458899999999888774
No 212
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics, PSI-2, protein STR initiative; HET: NAD GOL; 1.80A {Mycobacterium tuberculosis}
Probab=29.09 E-value=3.3e+02 Score=27.58 Aligned_cols=82 Identities=22% Similarity=0.233 Sum_probs=48.8
Q ss_pred CCcEEEEEcch---hHHHHHHHHHHHcCCCCCCeeee-cCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHH
Q psy12143 295 DGSIGCLVNGA---GLAMATMDIIKLHGGEPANFLDV-GGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEG 370 (443)
Q Consensus 295 ~g~iaiitngG---G~g~la~D~~~~~G~~~~NPvDl-~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~ 370 (443)
.||..|+=.|- -.+...++.+.++|..+. -+-+ .| .. ..-+.|+++|.+|.|. ++|+ ..+.+.
T Consensus 173 aGN~VVlKps~~tp~t~~~l~~l~~eaGlP~g-vv~vv~g--~~----~~g~~L~~~~~v~~I~--FTGS----~~~G~~ 239 (495)
T 3b4w_A 173 AGCTIVLKPAAETPLTANALAEVFAEVGLPEG-VLSVVPG--GI----ETGQALTSNPDIDMFT--FTGS----SAVGRE 239 (495)
T ss_dssp TTCEEEEECBTTSCHHHHHHHHHHHHTTCCTT-SEEECCB--SH----HHHHHHTTCTTCCEEE--EESC----HHHHHH
T ss_pred cCCEEEEecCCccHHHHHHHHHHHHHhCCCcC-eEEEEeC--CH----HHHHHHHhCCCcCEEE--EeCC----HHHHHH
Confidence 46655553332 356677888888886543 2222 34 22 2346677899999887 3443 355666
Q ss_pred HHHHHHHcCCCCcEEEEeCCC
Q psy12143 371 IIAAAQELSLKIPIICRLQGT 391 (443)
Q Consensus 371 i~~~~~~~~~~kpiv~~~~g~ 391 (443)
|.+.+.+ +-||++.-++|.
T Consensus 240 i~~~aa~--~l~pv~lELGGk 258 (495)
T 3b4w_A 240 VGRRAAE--MLKPCTLELGGK 258 (495)
T ss_dssp HHHHHHH--TTCCEEEECCCC
T ss_pred HHHHhhh--cCCceeecCCCc
Confidence 7666665 357776655553
No 213
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; HPCC; HET: NAD; 2.10A {Thermus thermophilus}
Probab=28.72 E-value=3e+02 Score=28.06 Aligned_cols=84 Identities=21% Similarity=0.125 Sum_probs=47.5
Q ss_pred CCcEEEEEcch---hHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHH
Q psy12143 295 DGSIGCLVNGA---GLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGI 371 (443)
Q Consensus 295 ~g~iaiitngG---G~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i 371 (443)
.||..|+=.|- -.+...++.+.++|..+.-.-=+.|... ..-+.|.++|.+|.|.. +|+ ..+.+.|
T Consensus 189 aGN~VVlKps~~tp~t~~~l~~l~~eaGlP~gvv~vv~g~~~-----~~g~~L~~~p~vd~I~F--TGS----~~~G~~I 257 (515)
T 2d4e_A 189 FGNTVVLKPAEWSPFTATKLAEILKEADLPPGVFNLVQGFGE-----EAGAALVAHPLVPLLTL--TGE----TETGKIV 257 (515)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHTTCCTTSEEECCCCTT-----THHHHHHHCTTCCEEEE--ESC----HHHHHHH
T ss_pred cCCeeeecCCCCcHHHHHHHHHHHHHhCCCcCeEEEEeCCch-----HHHHHHHhCCCcCEEEE--eCc----HHHHHHH
Confidence 34544443322 3456677888888865332222234321 23466778999998873 443 3556677
Q ss_pred HHHHHHcCCCCcEEEEeCCC
Q psy12143 372 IAAAQELSLKIPIICRLQGT 391 (443)
Q Consensus 372 ~~~~~~~~~~kpiv~~~~g~ 391 (443)
.+.+.+ +-||++.-++|.
T Consensus 258 ~~~aa~--~l~~v~lELGGk 275 (515)
T 2d4e_A 258 MRNAAD--HLKRLSPELGGK 275 (515)
T ss_dssp HHHHGG--GTCEEEEECCCC
T ss_pred HHHHhh--cCCceEecCCCc
Confidence 666665 347776555553
No 214
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 1.90A {Pseudoalteromonas atlantica T6C}
Probab=28.65 E-value=2.7e+02 Score=28.26 Aligned_cols=84 Identities=18% Similarity=0.173 Sum_probs=48.0
Q ss_pred CCcEEEEEcc---hhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHH
Q psy12143 295 DGSIGCLVNG---AGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGI 371 (443)
Q Consensus 295 ~g~iaiitng---GG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i 371 (443)
.||..|+-.| --.+...++.+.++|..+.-.-=++|... ..-+.|.++|.+|.|. ++|+ ..+.+.|
T Consensus 175 aGN~VVlKps~~tp~t~~~l~~ll~~aGlP~gvv~vv~g~~~-----~~g~~L~~~p~vd~I~--fTGS----~~~G~~i 243 (497)
T 3k2w_A 175 TGNTMVLKPTQETPLATTELGRIAKEAGLPDGVLNVINGTGS-----VVGQTLCESPITKMIT--MTGS----TVAGKQI 243 (497)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHTTCCTTSEEECCSCTT-----THHHHHHHCSSEEEEE--EESC----HHHHHHH
T ss_pred cCCEEEEECCCCChHHHHHHHHHHHHhCcCcCeEEEEeCCch-----HHHHHHHhCCCcCEEE--EECc----HHHHHHH
Confidence 4555555332 23456777888888865432222334221 1234567899999877 3443 3556666
Q ss_pred HHHHHHcCCCCcEEEEeCCC
Q psy12143 372 IAAAQELSLKIPIICRLQGT 391 (443)
Q Consensus 372 ~~~~~~~~~~kpiv~~~~g~ 391 (443)
.+.+.+ +-||++.-++|.
T Consensus 244 ~~~aa~--~l~pv~lElGGk 261 (497)
T 3k2w_A 244 YKTSAE--YMTPVMLELGGK 261 (497)
T ss_dssp HHHHTT--TTCCEEEECCCC
T ss_pred HHHhhh--cCCCeEEEcCCC
Confidence 666654 357777666554
No 215
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=28.35 E-value=2.3e+02 Score=22.62 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=53.9
Q ss_pred cEEEEEcchhHHHHHHHHHHHcCCCC----CCe----------ee-ecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC
Q psy12143 297 SIGCLVNGAGLAMATMDIIKLHGGEP----ANF----------LD-VGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI 361 (443)
Q Consensus 297 ~iaiitngGG~g~la~D~~~~~G~~~----~NP----------vD-l~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~ 361 (443)
++.|+ .+|..|...+..+...|.++ .|| +. +.|+.+.... ++.+ .-.+.|.+++..+
T Consensus 8 ~v~I~-G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~---l~~~-~~~~~d~vi~~~~--- 79 (141)
T 3llv_A 8 EYIVI-GSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESF---YRSL-DLEGVSAVLITGS--- 79 (141)
T ss_dssp SEEEE-CCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHH---HHHS-CCTTCSEEEECCS---
T ss_pred EEEEE-CCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHH---HHhC-CcccCCEEEEecC---
Confidence 46555 45779999999999998542 111 11 2345543322 1111 2346788776332
Q ss_pred CChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCc
Q psy12143 362 MRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKI 407 (443)
Q Consensus 362 ~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~ 407 (443)
.+..-..+...+++.+ ...|+++..... ..+.|++.|+-.
T Consensus 80 --~~~~n~~~~~~a~~~~-~~~iia~~~~~~---~~~~l~~~G~~~ 119 (141)
T 3llv_A 80 --DDEFNLKILKALRSVS-DVYAIVRVSSPK---KKEEFEEAGANL 119 (141)
T ss_dssp --CHHHHHHHHHHHHHHC-CCCEEEEESCGG---GHHHHHHTTCSE
T ss_pred --CHHHHHHHHHHHHHhC-CceEEEEEcChh---HHHHHHHcCCCE
Confidence 1222233444556655 667777766542 335788889864
No 216
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=28.35 E-value=3.3e+02 Score=27.46 Aligned_cols=82 Identities=16% Similarity=0.144 Sum_probs=48.4
Q ss_pred CCcEEEEEcc---hhHHHHHHHHHHHcCCCCCCeee-ecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHH
Q psy12143 295 DGSIGCLVNG---AGLAMATMDIIKLHGGEPANFLD-VGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEG 370 (443)
Q Consensus 295 ~g~iaiitng---GG~g~la~D~~~~~G~~~~NPvD-l~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~ 370 (443)
.||..|+=.| -..+...++.+.++|..+. -+- +.| .. ..-+.++++|.+|.|. ++|+ ..+.+.
T Consensus 168 aGN~VVlKps~~tp~t~~~l~~l~~~aGlP~g-vv~vv~g--~~----~~~~~L~~~~~v~~I~--fTGS----~~~g~~ 234 (486)
T 1t90_A 168 LGNTFILKPSERTPLLTEKLVELFEKAGLPKG-VFNVVYG--AH----DVVNGILEHPEIKAIS--FVGS----KPVGEY 234 (486)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHTTCCTT-SEEECCC--SH----HHHHHHHHCTTEEEEE--EESC----HHHHHH
T ss_pred cCCEEEEECCCCChHHHHHHHHHHHHhCCCCC-EEEEEEC--CH----HHHHHHHhCCCCCEEE--EeCC----HHHHHH
Confidence 4565555322 2346777888998886543 222 234 22 2346677899999877 3443 345566
Q ss_pred HHHHHHHcCCCCcEEEEeCCC
Q psy12143 371 IIAAAQELSLKIPIICRLQGT 391 (443)
Q Consensus 371 i~~~~~~~~~~kpiv~~~~g~ 391 (443)
|.+.+.+ ..||++.-++|.
T Consensus 235 i~~~aa~--~~~pv~lElGGk 253 (486)
T 1t90_A 235 VYKKGSE--NLKRVQSLTGAK 253 (486)
T ss_dssp HHHHHHH--TTCEEEEECCCC
T ss_pred HHHHHhc--cCCcEEeccCCC
Confidence 6666555 357776655553
No 217
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti deseases, NAD, oxidoreductase, PSI; 1.70A {Staphylococcus aureus} PDB: 3fg0_A*
Probab=28.28 E-value=3.3e+02 Score=27.80 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEE
Q psy12143 307 LAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIIC 386 (443)
Q Consensus 307 ~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~ 386 (443)
.+...++++.++|..+.=.-=++|... .+-+.|.++|.+|.|. ++|+ ..+.+.|.+.+.+ +-||+..
T Consensus 212 t~~~l~~l~~eaGlP~gvvnvv~g~~~-----~~g~~L~~~p~vd~V~--FTGS----~~vG~~i~~~aa~--~l~~v~l 278 (520)
T 3ed6_A 212 TTIRVFELMEEVGFPKGTINLILGAGS-----EVGDVMSGHKEVDLVS--FTGG----IETGKHIMKNAAN--NVTNIAL 278 (520)
T ss_dssp HHHHHHHHHHHHCCCTTSEEECCSCCT-----THHHHHHHCTTCSEEE--EESC----HHHHHHHHHHHHT--TTCEEEE
T ss_pred HHHHHHHHHHHhCCCCCeEEEEeCCCh-----HHHHHHHhCCCcCEEE--EECC----HHHHHHHHHHhhh--cCCCEEE
Confidence 466778888888875432222344321 1345677899999877 3443 3455666666555 3577765
Q ss_pred EeCCC
Q psy12143 387 RLQGT 391 (443)
Q Consensus 387 ~~~g~ 391 (443)
-++|.
T Consensus 279 ELGGk 283 (520)
T 3ed6_A 279 ELGGK 283 (520)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 55553
No 218
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A
Probab=27.93 E-value=2.1e+02 Score=29.06 Aligned_cols=80 Identities=19% Similarity=0.152 Sum_probs=43.5
Q ss_pred cEEEEEccCCCCChHHHHHHHHHHHHHc--CCCCcEEEEeC-C-CC-HHHHHHHHH---HCCC---CcccCCCHHHHHHH
Q psy12143 351 CAIMVNIFGGIMRCDVIAEGIIAAAQEL--SLKIPIICRLQ-G-TN-VDDAKVLIA---SAAM---KILPCDNLDEAARL 419 (443)
Q Consensus 351 d~vlv~i~~~~~~~~~~a~~i~~~~~~~--~~~kpiv~~~~-g-~~-~~~~~~~L~---~~Gi---P~~~f~s~e~Av~a 419 (443)
|++ |.++||....+++.+.+.-..-.. .++|||+..-. + .+ ...-.+.|+ ..|- -..+.+||+++++.
T Consensus 249 DAf-IaLPGG~GTLEELfE~LTw~qLgtgk~h~kPIVLln~~~~~gYwd~Ll~fL~~~v~eg~~~~~~iv~DdpeEvl~~ 327 (462)
T 3gh1_A 249 HGI-IIFPGGPGTAEELLYILGIMMHPENADQPMPIVLTGPKQSEAYFRSLDKFITDTLGEAARKHYSIAIDNPAEAARI 327 (462)
T ss_dssp SEE-EECSCSHHHHHHHHHHHHHHTSGGGTTCCCCEEEEECGGGHHHHHHHHHHHHHHHCGGGGGGCEEEESCHHHHHHH
T ss_pred CEE-EEcCCCcchHHHHHHHHHHHhcccCcCCCCCEEEEcCCCcccHHHHHHHHHHHHhhhhhhhccEEEcCCHHHHHHH
Confidence 564 447888655778877765431111 24799986532 1 11 111122222 1221 11236999999999
Q ss_pred HHHHHHHHhHHH
Q psy12143 420 AVKLSSIVGLAR 431 (443)
Q Consensus 420 l~~l~~~~~~~~ 431 (443)
+......+..-|
T Consensus 328 i~~~~~~v~~~r 339 (462)
T 3gh1_A 328 MSNAMPLVRQHR 339 (462)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988876664333
No 219
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=27.79 E-value=2.7e+02 Score=26.18 Aligned_cols=60 Identities=12% Similarity=0.046 Sum_probs=33.5
Q ss_pred HHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEE-eCCCCHHHHH---HHHHHCCCCc
Q psy12143 340 AFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICR-LQGTNVDDAK---VLIASAAMKI 407 (443)
Q Consensus 340 al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~-~~g~~~~~~~---~~L~~~GiP~ 407 (443)
.++.++++|++|+|++..+.. .-++.+.++++ ..|+|++- ....+..++. +..++.|+.+
T Consensus 57 ~~~~ll~~~~~D~V~i~tp~~-----~h~~~~~~al~---aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~ 120 (336)
T 2p2s_A 57 SAEQLITDASIDLIACAVIPC-----DRAELALRTLD---AGKDFFTAKPPLTTLEQLDAVQRRVAETGRKF 120 (336)
T ss_dssp CHHHHHTCTTCCEEEECSCGG-----GHHHHHHHHHH---TTCEEEECSSCCSCHHHHHHHHHHHHHHCCCE
T ss_pred CHHHHhhCCCCCEEEEeCChh-----hHHHHHHHHHH---CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 366778899999999744321 12233334443 35777653 2233444443 3455678765
No 220
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=27.79 E-value=2.7e+02 Score=25.45 Aligned_cols=90 Identities=12% Similarity=0.056 Sum_probs=47.2
Q ss_pred CCCCHHHHHHHHHHHHc----CCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCc---EEEEeCCCCHHHHHHHHHH
Q psy12143 330 GGATAAQVKEAFKIITA----DPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIP---IICRLQGTNVDDAKVLIAS 402 (443)
Q Consensus 330 g~~~~~~~~~al~~ll~----dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kp---iv~~~~g~~~~~~~~~L~~ 402 (443)
++.+.+.-.++++.+++ +|.+++|++ ..+.+|.++.+++++.+...| +.+..+.+........+..
T Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~-------~nd~~A~g~~~al~~~g~~vP~d~i~vv~g~D~~~~~~~~i~~ 253 (330)
T 3uug_A 181 LRWDPATAQARMDNLLSAYYTDAKVDAVLS-------PYDGLSIGIISSLKGVGYGTKDQPLPVVSGQDAEVPSVKSIIA 253 (330)
T ss_dssp GGGCHHHHHHHHHHHHHHHCSSSCCCEEEC-------SSHHHHHHHHHHHHHTTCSSSSSCCCEECCSSCCHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCeEEEEE-------CCCchHHHHHHHHHHcCCCCCCCceEEEEecCCCHHHHHHHHc
Confidence 44455554444555554 589999884 137889999999998765422 3222222223444555543
Q ss_pred CCCCc-ccCCCHH-HHHHHHHHHHHHH
Q psy12143 403 AAMKI-LPCDNLD-EAARLAVKLSSIV 427 (443)
Q Consensus 403 ~GiP~-~~f~s~e-~Av~al~~l~~~~ 427 (443)
|-+. .+..++. -+-.++..|.+++
T Consensus 254 -~~~lttv~~~~~~~g~~a~~~l~~~i 279 (330)
T 3uug_A 254 -GEQYSTIFKDTRELAKVTVNMVNAVM 279 (330)
T ss_dssp -TSSCCEEECCHHHHHHHHHHHHHHHH
T ss_pred -CCceEEEecCHHHHHHHHHHHHHHHH
Confidence 3222 2233443 3334444445544
No 221
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=27.62 E-value=92 Score=29.78 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=34.0
Q ss_pred HHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEE-eCCCCHHHHHHH------HHHCCCCc
Q psy12143 341 FKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICR-LQGTNVDDAKVL------IASAAMKI 407 (443)
Q Consensus 341 l~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~-~~g~~~~~~~~~------L~~~GiP~ 407 (443)
++.+++||++|+|+|..+.. . =++.+.++++ .+|+|++= ....+..++.++ -++.|+.+
T Consensus 67 ~~~ll~~~~iDaV~I~tP~~---~--H~~~~~~al~---aGkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~~~ 132 (390)
T 4h3v_A 67 WRTLLERDDVQLVDVCTPGD---S--HAEIAIAALE---AGKHVLCEKPLANTVAEAEAMAAAAAKAAAGGIRS 132 (390)
T ss_dssp HHHHTTCTTCSEEEECSCGG---G--HHHHHHHHHH---TTCEEEEESSSCSSHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHhcCCCCCEEEEeCChH---H--HHHHHHHHHH---cCCCceeecCcccchhHHHHHHHHHHHHHhcCCce
Confidence 67788999999999844321 1 1233333333 36777763 344456666544 33367654
No 222
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD, cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries} SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Probab=27.49 E-value=3.6e+02 Score=27.38 Aligned_cols=84 Identities=20% Similarity=0.090 Sum_probs=48.6
Q ss_pred CCcEEEEEcc---hhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHH
Q psy12143 295 DGSIGCLVNG---AGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGI 371 (443)
Q Consensus 295 ~g~iaiitng---GG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i 371 (443)
.||..|+=.| -..+...++.+.++|..+.-.-=+.|... ..-+.|.++|.+|.|. ++|+ ..+.+.|
T Consensus 186 aGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gv~~vv~g~~~-----~~g~~L~~~~~v~~I~--FTGS----~~~G~~i 254 (501)
T 1bxs_A 186 CGNTVVVKPAEQTPLTALHMGSLIKEAGFPPGVVNIVPGYGP-----TAGAAISSHMDVDKVA--FTGS----TEVGKLI 254 (501)
T ss_dssp TTCEEEEECCTTCCHHHHHHHHHHHHHTCCTTSEEECCSCTT-----THHHHHHTCTTCSEEE--EESC----HHHHHHH
T ss_pred cCCeeeccCCCccHHHHHHHHHHHHHhCCCcceEEEEecCch-----HHHHHHHhCCCcCEEE--EECC----HHHHHHH
Confidence 4555555322 22466778889988865432222244221 1246677899999877 3443 3556666
Q ss_pred HHHHH-HcCCCCcEEEEeCCC
Q psy12143 372 IAAAQ-ELSLKIPIICRLQGT 391 (443)
Q Consensus 372 ~~~~~-~~~~~kpiv~~~~g~ 391 (443)
.+.+. + +-||++.-++|.
T Consensus 255 ~~~aa~~--~l~~v~lELGGk 273 (501)
T 1bxs_A 255 KEAAGKS--NLKRVSLELGGK 273 (501)
T ss_dssp HHHHHHT--TCCEEEEECCCC
T ss_pred HHHhhhc--cCCcEEEecCCc
Confidence 66655 4 457777655554
No 223
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=27.35 E-value=3e+02 Score=23.73 Aligned_cols=119 Identities=17% Similarity=0.046 Sum_probs=66.0
Q ss_pred CcEEEEEcchh---HHHHHHHHHHHcCCCCCCeeeec---CCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHH
Q psy12143 296 GSIGCLVNGAG---LAMATMDIIKLHGGEPANFLDVG---GGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAE 369 (443)
Q Consensus 296 g~iaiitngGG---~g~la~D~~~~~G~~~~NPvDl~---g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~ 369 (443)
.+|+|++.|-. ..--+++.++.+|. |.|++ ..=+++.+.+..+...+....+.+++. .|...-. -
T Consensus 3 ~~V~Iimgs~SD~~v~~~a~~~l~~~gi----~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~-AG~aa~L----p 73 (159)
T 3rg8_A 3 PLVIILMGSSSDMGHAEKIASELKTFGI----EYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITI-AGRSNAL----S 73 (159)
T ss_dssp CEEEEEESSGGGHHHHHHHHHHHHHTTC----EEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEE-CCSSCCH----H
T ss_pred CeEEEEECcHHHHHHHHHHHHHHHHcCC----CEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEE-CCchhhh----H
Confidence 46888887754 34456778887775 46664 233345555555554443356666653 3332211 2
Q ss_pred HHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHH-----CCCCcccCCCHHHHHHHHHHHHHHHh
Q psy12143 370 GIIAAAQELSLKIPIICRLQGTNVDDAKVLIAS-----AAMKILPCDNLDEAARLAVKLSSIVG 428 (443)
Q Consensus 370 ~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~-----~GiP~~~f~s~e~Av~al~~l~~~~~ 428 (443)
+++... ..+||+.+........+++ |-. .|+|+...++...|.-...++..+.+
T Consensus 74 gvvA~~----t~~PVIgVP~~~~~l~G~d-LlS~vqmp~GvpVatv~~~~nAa~lA~~Il~~~d 132 (159)
T 3rg8_A 74 GFVDGF----VKGATIACPPPSDSFAGAD-IYSSLRMPSGISPALVLEPKNAALLAARIFSLYD 132 (159)
T ss_dssp HHHHHH----SSSCEEECCCCCCGGGGTH-HHHHHCCCTTCCCEECCSHHHHHHHHHHHHTTTC
T ss_pred HHHHhc----cCCCEEEeeCCCCCCCCcc-HHHHHhCCCCCceEEecCchHHHHHHHHHHhCCC
Confidence 333322 5799997653222233444 332 59998777788777666555555443
No 224
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A
Probab=27.35 E-value=1.1e+02 Score=27.35 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=35.3
Q ss_pred eeecCCCCHH---HHHHHHHHHHcCCCccEEEE--EccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCC
Q psy12143 326 LDVGGGATAA---QVKEAFKIITADPKVCAIMV--NIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGT 391 (443)
Q Consensus 326 vDl~g~~~~~---~~~~al~~ll~dp~vd~vlv--~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~ 391 (443)
+-++|..+.. .+...|..+.+++..+.|++ |.+||. ..-+..|.+..+. .++||++.+.|.
T Consensus 30 I~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG~---v~~~~~I~~~i~~--~~~~V~t~~~G~ 95 (203)
T 3qwd_A 30 IMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGS---VTAGFAIYDTIQH--IKPDVQTICIGM 95 (203)
T ss_dssp EEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBC---HHHHHHHHHHHHH--SSSCEEEEEEEE
T ss_pred EEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCC---HHHHHHHHHHHHH--hcCCcEEEEeee
Confidence 3445555543 35555666666555555444 777773 1234566666776 468888765443
No 225
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase, FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB: 2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A* 3rhr_A* 3rhl_A*
Probab=26.95 E-value=4.2e+02 Score=27.06 Aligned_cols=83 Identities=13% Similarity=0.157 Sum_probs=47.5
Q ss_pred CCcEEEEEcc---hhHHHHHHHHHHHcCCCCCCeeee-cCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHH
Q psy12143 295 DGSIGCLVNG---AGLAMATMDIIKLHGGEPANFLDV-GGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEG 370 (443)
Q Consensus 295 ~g~iaiitng---GG~g~la~D~~~~~G~~~~NPvDl-~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~ 370 (443)
.||..|+=.| -..+...++.+.++|..++ -+-+ +|. .. ..-+.|.++|.+|.|. ++|+ ..+.+.
T Consensus 205 aGNtVVlKps~~tp~ta~~l~~l~~eaGlP~g-vv~vv~g~--g~---~~g~~L~~~~~v~~V~--FTGS----~~~G~~ 272 (517)
T 2o2p_A 205 AGNTVVIKPAQVTPLTALKFAELTLKAGIPKG-VVNILPGS--GS---LVGQRLSDHPDVRKIG--FTGS----TEVGKH 272 (517)
T ss_dssp TTCEEEEECCTTCCHHHHHHHHHHHHTTCCTT-SEEECCSC--HH---HHHHHHHHCTTCCEEE--EESC----HHHHHH
T ss_pred cCCEEEEECCCccHHHHHHHHHHHHHhCCCcC-eEEEEeCC--CH---HHHHHHHhCCCCCEEE--EECC----HHHHHH
Confidence 4554444322 2346677888888876533 2222 342 11 2345578899999877 3443 355666
Q ss_pred HHHHHH-HcCCCCcEEEEeCCC
Q psy12143 371 IIAAAQ-ELSLKIPIICRLQGT 391 (443)
Q Consensus 371 i~~~~~-~~~~~kpiv~~~~g~ 391 (443)
|.+.+. + .-||++.-++|.
T Consensus 273 I~~~aa~~--~lk~v~lELGGk 292 (517)
T 2o2p_A 273 IMKSCALS--NVKKVSLELGGK 292 (517)
T ss_dssp HHHHHHHH--TCCEEEEECCCC
T ss_pred HHHHhHHh--cCCeEEEECCCc
Confidence 666655 4 357776655553
No 226
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex, oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB: 2ilu_A* 2hg2_A* 2opx_A*
Probab=26.90 E-value=2.7e+02 Score=28.08 Aligned_cols=84 Identities=21% Similarity=0.202 Sum_probs=47.7
Q ss_pred CCcEEEEEcc---hhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHH
Q psy12143 295 DGSIGCLVNG---AGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGI 371 (443)
Q Consensus 295 ~g~iaiitng---GG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i 371 (443)
.||..|+-.| --.+...++.+.++|..+.-.-=+.|+.. ..-+.+.++|.+|.|. ++|+ ..+.+.|
T Consensus 169 aGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~-----~~~~~L~~~~~v~~V~--fTGS----~~~g~~i 237 (479)
T 2imp_A 169 TGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGE-----TVGQELAGNPKVAMVS--MTGS----VSAGEKI 237 (479)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHTCCTTSEEECCSCTT-----THHHHHHHCTTEEEEE--EESC----HHHHHHH
T ss_pred cCCEEEEECCccchHHHHHHHHHHHHhCCCcCeEEEEECCcH-----HHHHHHHhCCCcCEEE--EeCC----HHHHHHH
Confidence 3554444222 23566677888888865432222244321 1345677899999877 3443 3556667
Q ss_pred HHHHHHcCCCCcEEEEeCCC
Q psy12143 372 IAAAQELSLKIPIICRLQGT 391 (443)
Q Consensus 372 ~~~~~~~~~~kpiv~~~~g~ 391 (443)
.+.+.+ +-||++.-++|.
T Consensus 238 ~~~aa~--~~~~v~lElGGk 255 (479)
T 2imp_A 238 MATAAK--NITKVCLELGGK 255 (479)
T ss_dssp HHHHHT--TTCEEEEECCCC
T ss_pred HHHHhc--cCCcEEEEcCCc
Confidence 666655 457776655553
No 227
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Lactobacillus acidophilus}
Probab=26.84 E-value=2.8e+02 Score=28.09 Aligned_cols=71 Identities=21% Similarity=0.247 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEE
Q psy12143 307 LAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIIC 386 (443)
Q Consensus 307 ~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~ 386 (443)
.+...++.+.++|..+.=.-=++|+ .+ .+-+ +.++|.+|.|. ++|+ ..+.+.|.+.+.+ +-||++.
T Consensus 165 t~~~l~~l~~~aGlP~gvv~vv~g~--~~---~~~~-L~~~p~vd~I~--fTGS----~~~G~~i~~~aa~--~lk~v~l 230 (484)
T 3ros_A 165 SAALTAKIIKRAGAPEGSLINLYPS--YD---QLAD-IIADPRIQGVA--LTGS----ERGGSAVAEAAGK--NLKKSTM 230 (484)
T ss_dssp HHHHHHHHHHHHTCCTTSEEEECCC--HH---HHHH-HHTSTTEEEEE--EESC----HHHHHHHHHHHHH--TTCEEEE
T ss_pred HHHHHHHHHHHhCcCcCeEEEEeCC--hH---HHHH-HHhCCCcCEEE--EECC----HHHHHHHHHHHhc--cCCceEe
Confidence 4567778888888654322223442 12 1234 77899999877 3443 3556677766665 3577766
Q ss_pred EeCCC
Q psy12143 387 RLQGT 391 (443)
Q Consensus 387 ~~~g~ 391 (443)
-++|.
T Consensus 231 ELGGk 235 (484)
T 3ros_A 231 ELGGN 235 (484)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 55554
No 228
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.63A {Marinobacter aquaeolei}
Probab=26.78 E-value=2.2e+02 Score=29.06 Aligned_cols=72 Identities=15% Similarity=0.109 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEE
Q psy12143 307 LAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIIC 386 (443)
Q Consensus 307 ~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~ 386 (443)
.+...++.+.++|..+.-.-=++|. . ..+-+.++++|.+|.|. ++|+ ..+.+.|.+.+.+ +-||++.
T Consensus 189 t~~~l~~l~~eaGlP~gvv~vv~g~--~---~~~g~~L~~~p~vd~I~--FTGS----~~vG~~i~~~aa~--~l~~v~l 255 (506)
T 3rh9_A 189 TMIAFFSVMDKLDLPDGMVNLVMGK--A---SVIGKVLCEHKDVPMLS--FTGS----TEVGRKLIVDTAE--QVKKLAL 255 (506)
T ss_dssp HHHHHHHHHTTTTCCTTSEEECCSC--H---HHHHHHHHHCTTCCEEE--EESC----HHHHHHHHHHTTT--TTCEEEE
T ss_pred HHHHHHHHHHHhCcChhhEEEEeCC--C---hHHHHHHHhCCCCCEEE--EECC----HHHHHHHHHHhhh--cCCceEE
Confidence 4566677777777543322222332 1 13455677899999877 3443 3455666665544 3577766
Q ss_pred EeCCC
Q psy12143 387 RLQGT 391 (443)
Q Consensus 387 ~~~g~ 391 (443)
-++|.
T Consensus 256 ElGGk 260 (506)
T 3rh9_A 256 ELGGN 260 (506)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 66554
No 229
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural genomics; HET: MES; 2.10A {Brucella melitensis biovar ABORTUS2308}
Probab=26.14 E-value=3.7e+02 Score=27.32 Aligned_cols=71 Identities=20% Similarity=0.186 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCCCCCCeeee-cCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEE
Q psy12143 307 LAMATMDIIKLHGGEPANFLDV-GGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPII 385 (443)
Q Consensus 307 ~g~la~D~~~~~G~~~~NPvDl-~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv 385 (443)
.+...++.+.+.|..+. -+.+ +|. . ..+-+.|.++|.+|.|. ++|+ ..+.+.|.+.+.+ .-||++
T Consensus 210 t~~~l~~l~~eaGlP~g-v~~vv~g~--~---~~~g~~L~~~p~v~~V~--FTGS----~~~G~~i~~~aa~--~lk~v~ 275 (504)
T 3ek1_A 210 TALALGVLAEKAGIPAG-VLQIVTGK--A---REIGAELTSNDTVRKLS--FTGS----TEVGRLLMAQCAP--TIKRIS 275 (504)
T ss_dssp HHHHHHHHHHHTTCCTT-TEEECCSC--H---HHHHHHHHHCTTCCEEE--EESC----HHHHHHHHHHHGG--GTCEEE
T ss_pred HHHHHHHHHHHhCCCcc-cEEEEeCC--C---HHHHHHHHhCCCcCEEE--EECC----HHHHHHHHHhhhh--hcCCeE
Confidence 45677788888886532 2222 232 1 12455677899999877 3443 3456666666554 347776
Q ss_pred EEeCCC
Q psy12143 386 CRLQGT 391 (443)
Q Consensus 386 ~~~~g~ 391 (443)
.-++|.
T Consensus 276 lELGGk 281 (504)
T 3ek1_A 276 LELGGN 281 (504)
T ss_dssp EECCCC
T ss_pred ecCCCC
Confidence 555553
No 230
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=26.06 E-value=3.3e+02 Score=23.83 Aligned_cols=89 Identities=10% Similarity=0.203 Sum_probs=48.2
Q ss_pred CCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcE-EEEeCCCCHHHHHHHHHHCCCCc
Q psy12143 330 GGATAAQ-VKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPI-ICRLQGTNVDDAKVLIASAAMKI 407 (443)
Q Consensus 330 g~~~~~~-~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpi-v~~~~g~~~~~~~~~L~~~GiP~ 407 (443)
++.+.+. +..+-+.+.+.|++++|++. .+.+|.++.+++++.+.+.-| |+.+.+. ..+.+.+....+-.
T Consensus 167 ~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a~g~~~al~~~g~p~di~vig~d~~--~~~~~~~~~~~l~t 237 (276)
T 3ksm_A 167 AGDDRGAARSEMLRLLKETPTIDGLFTP-------NESTTIGALVAIRQSGMSKQFGFIGFDQT--EELEAAMYAGEISN 237 (276)
T ss_dssp CCSSHHHHHHHHHHHHHHCSCCCEEECC-------SHHHHHHHHHHHHHTTCTTSSEEEEESCC--HHHHHHHHTTSSSE
T ss_pred CCCcHHHHHHHHHHHHHhCCCceEEEEC-------CchhhhHHHHHHHHcCCCCCeEEEEeCCC--HHHHHHHHcCCceE
Confidence 3445554 44555555567899998841 377888999999986542223 3333332 34445555533312
Q ss_pred ccCCCHHH-HHHHHHHHHHHH
Q psy12143 408 LPCDNLDE-AARLAVKLSSIV 427 (443)
Q Consensus 408 ~~f~s~e~-Av~al~~l~~~~ 427 (443)
.+..++++ +-.++..|.+++
T Consensus 238 tv~~~~~~~g~~a~~~l~~~i 258 (276)
T 3ksm_A 238 LVVQNPEYMGYLAVQRALDLV 258 (276)
T ss_dssp EEECCHHHHHHHHHHHHHHHH
T ss_pred EEEeCHHHhHHHHHHHHHHHH
Confidence 22334443 444444555554
No 231
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=25.93 E-value=2.9e+02 Score=29.94 Aligned_cols=117 Identities=13% Similarity=0.040 Sum_probs=68.5
Q ss_pred CcEEEEEcch-----hHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHH
Q psy12143 296 GSIGCLVNGA-----GLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEG 370 (443)
Q Consensus 296 g~iaiitngG-----G~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~ 370 (443)
++|.+-|.+| |.- +.+.+++..|..+ +|++.+.+++.+.++... -++|.|.++...+ ........
T Consensus 605 ~kVvlatvg~D~HdiG~~-iVa~~l~~~GfeV---i~lG~~v~~eeiv~aA~e----~~adiVglSsl~~--~~~~~~~~ 674 (762)
T 2xij_A 605 PRLLVAKMGQDGHDRGAK-VIATGFADLGFDV---DIGPLFQTPREVAQQAVD----ADVHAVGVSTLAA--GHKTLVPE 674 (762)
T ss_dssp CEEEEECCSSCCCCHHHH-HHHHHHHHTTCEE---EECCTTCCHHHHHHHHHH----TTCSEEEEEECSS--CHHHHHHH
T ss_pred CEEEEEecCcchhhHHHH-HHHHHHHhCCeEE---eeCCCCCCHHHHHHHHHH----cCCCEEEEeeecH--HHHHHHHH
Confidence 4566666665 332 4557888888665 678888888876555422 3567777754332 23344566
Q ss_pred HHHHHHHcCC-CCcEEEEeCCCCHHHHHHHHHHCCCCcccCC---CHHHHHHHHHHHHH
Q psy12143 371 IIAAAQELSL-KIPIICRLQGTNVDDAKVLIASAAMKILPCD---NLDEAARLAVKLSS 425 (443)
Q Consensus 371 i~~~~~~~~~-~kpiv~~~~g~~~~~~~~~L~~~GiP~~~f~---s~e~Av~al~~l~~ 425 (443)
+++.+++.+. +.+|++ +|.........+.+.|+--+ |. +..+++..+..+..
T Consensus 675 vi~~Lr~~G~~dv~Viv--GG~~P~~d~~~l~~~GaD~~-f~pgtd~~e~~~~i~~~l~ 730 (762)
T 2xij_A 675 LIKELNSLGRPDILVMC--GGVIPPQDYEFLFEVGVSNV-FGPGTRIPKAAVQVLDDIE 730 (762)
T ss_dssp HHHHHHHTTCTTSEEEE--EESCCGGGHHHHHHHTCCEE-ECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEE--eCCCCcccHHHHHhCCCCEE-eCCCCCHHHHHHHHHHHHH
Confidence 7777777544 334333 33111112345778898642 44 78888877776653
No 232
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=25.93 E-value=3.7e+02 Score=24.31 Aligned_cols=123 Identities=15% Similarity=0.011 Sum_probs=61.6
Q ss_pred CcEEEEEcchhHHH------HHHHHHHHcCCCCCCee-e--ecCCCCHHHHHHHHHH-HHcC-CCccEEEEEccCCCCCh
Q psy12143 296 GSIGCLVNGAGLAM------ATMDIIKLHGGEPANFL-D--VGGGATAAQVKEAFKI-ITAD-PKVCAIMVNIFGGIMRC 364 (443)
Q Consensus 296 g~iaiitngGG~g~------la~D~~~~~G~~~~NPv-D--l~g~~~~~~~~~al~~-ll~d-p~vd~vlv~i~~~~~~~ 364 (443)
++|++++...+... -..+++..+|..+.-.+ + ..++.+.+.-.++++. +.+. |.+++|++. .
T Consensus 124 ~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~-------~ 196 (313)
T 3m9w_A 124 GNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPENALKIMENALTANNNKIDAVVAS-------N 196 (313)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEECGGGCHHHHHHHHHHHHHHTTTCCCEEEES-------S
T ss_pred CcEEEEECCCCCccHHHHHHHHHHHHHhhccCCCEEEEeeccCCCcCHHHHHHHHHHHHHhCCCCeeEEEEC-------C
Confidence 36999875443221 12355555532221111 1 2455566654444444 4455 899999851 3
Q ss_pred HHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHC-CCCcccCCCHH-HHHHHHHHHHHHH
Q psy12143 365 DVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASA-AMKILPCDNLD-EAARLAVKLSSIV 427 (443)
Q Consensus 365 ~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~-GiP~~~f~s~e-~Av~al~~l~~~~ 427 (443)
+.+|.++++++++.+...-|.+ .+..+...+...+... .+-+ +..++. -+-.++..|.+++
T Consensus 197 d~~a~g~~~al~~~G~~~di~v-ig~d~~~~~~~~~~~~p~ltt-v~~~~~~~g~~av~~l~~~i 259 (313)
T 3m9w_A 197 DATAGGAIQALSAQGLSGKVAI-SGQDADLAGIKRIAAGTQTMT-VYKPITLLANTAAEIAVELG 259 (313)
T ss_dssp HHHHHHHHHHHHTTTCTTTSEE-CCCSCCHHHHHHHHHTSSCCE-EECCHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHcCCCCCcEE-EecCCCHHHHHHHHcCCeEEE-EecCHHHHHHHHHHHHHHHH
Confidence 6788899999988654322322 2222334454444432 2222 233443 3444444455554
No 233
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=25.58 E-value=2.4e+02 Score=26.05 Aligned_cols=76 Identities=14% Similarity=0.038 Sum_probs=45.0
Q ss_pred CcEEEEEcchhHHH------HHHHHHHHc-CCCCCCeeeecCCCCHHHHHHHHHHHH-c-CCCccEEEEEccCCCCChHH
Q psy12143 296 GSIGCLVNGAGLAM------ATMDIIKLH-GGEPANFLDVGGGATAAQVKEAFKIIT-A-DPKVCAIMVNIFGGIMRCDV 366 (443)
Q Consensus 296 g~iaiitngGG~g~------la~D~~~~~-G~~~~NPvDl~g~~~~~~~~~al~~ll-~-dp~vd~vlv~i~~~~~~~~~ 366 (443)
++|++++..-+... -..+++..+ |.+.. ++ ..++.+.+...++++.++ + .|.+++|++. .+.
T Consensus 137 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~~~-~~-~~~~~~~~~~~~~~~~ll~~~~~~~~aI~~~-------nd~ 207 (332)
T 2rjo_A 137 GGVVALGGIFSNVPAIERKAGLDAALKKFPGIQLL-DF-QVADWNSQKAFPIMQAWMTRFNSKIKGVWAA-------NDD 207 (332)
T ss_dssp EEEEEEECCTTCHHHHHHHHHHHHHHHTCTTEEEE-EE-EECTTCHHHHHHHHHHHHHHHGGGEEEEEES-------SHH
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEE-ee-ccCCCCHHHHHHHHHHHHHhcCCCeeEEEEC-------CCc
Confidence 46999976533211 123556655 53321 11 345666665445555544 4 6789998851 367
Q ss_pred HHHHHHHHHHHcCC
Q psy12143 367 IAEGIIAAAQELSL 380 (443)
Q Consensus 367 ~a~~i~~~~~~~~~ 380 (443)
+|.++++++++.+.
T Consensus 208 ~A~g~~~al~~~G~ 221 (332)
T 2rjo_A 208 MALGAIEALRAEGL 221 (332)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHcCC
Confidence 88899999888654
No 234
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=25.47 E-value=1.6e+02 Score=26.40 Aligned_cols=77 Identities=18% Similarity=0.071 Sum_probs=44.2
Q ss_pred CcEEEEEcchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHH
Q psy12143 296 GSIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAE 369 (443)
Q Consensus 296 g~iaiitngGG~g~------la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~ 369 (443)
++|++++..-+... -..+++.++|.+.. +.-..++.+ +..+.+.+.+.|.+++|++ ..|.+|.
T Consensus 123 ~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~-~~~~~~~~~---~~~~~~~l~~~~~~~ai~~-------~~d~~A~ 191 (277)
T 3hs3_A 123 EKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYL-LEETPENNP---YISAQSALNKSNQFDAIIT-------VNDLYAA 191 (277)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEE-EEECCSSCH---HHHHHHHHHTGGGCSEEEC-------SSHHHHH
T ss_pred CEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCC-CCCccCCch---HHHHHHHHcCCCCCCEEEE-------CCHHHHH
Confidence 46888876533221 13456666664321 111223222 4444444445688999884 1378889
Q ss_pred HHHHHHHHcCCCCc
Q psy12143 370 GIIAAAQELSLKIP 383 (443)
Q Consensus 370 ~i~~~~~~~~~~kp 383 (443)
++.+++++.+...|
T Consensus 192 g~~~al~~~g~~vP 205 (277)
T 3hs3_A 192 EIIKEAKRRNLKIP 205 (277)
T ss_dssp HHHHHHHHTTCCTT
T ss_pred HHHHHHHHcCCCCC
Confidence 99999998765433
No 235
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=25.37 E-value=3.2e+02 Score=24.35 Aligned_cols=79 Identities=14% Similarity=0.128 Sum_probs=46.3
Q ss_pred CcEEEEEcchhHHH------HHHHHHHHcCCCCCC-eeee--cCCC----CHHHHHHHHHHHHcCCCccEEEEEccCCCC
Q psy12143 296 GSIGCLVNGAGLAM------ATMDIIKLHGGEPAN-FLDV--GGGA----TAAQVKEAFKIITADPKVCAIMVNIFGGIM 362 (443)
Q Consensus 296 g~iaiitngGG~g~------la~D~~~~~G~~~~N-PvDl--~g~~----~~~~~~~al~~ll~dp~vd~vlv~i~~~~~ 362 (443)
++|++++...+... -..+++.++|.+... .+ . .++. +.+.-.++++.+++. ++|+|++.
T Consensus 123 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ai~~~------ 194 (288)
T 2qu7_A 123 KEVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLI-HYSDQQLGTNAQIYSGYEATKTLLSK-GIKGIVAT------ 194 (288)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGE-EECCSSCSHHHHHHHHHHHHHHHHHT-TCCEEEEC------
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcceE-EeccCCccccCCHHHHHHHHHHHHhc-CCCEEEEC------
Confidence 56999875432111 124667777755321 12 2 4454 444444556666655 78898851
Q ss_pred ChHHHHHHHHHHHHHcCCCCc
Q psy12143 363 RCDVIAEGIIAAAQELSLKIP 383 (443)
Q Consensus 363 ~~~~~a~~i~~~~~~~~~~kp 383 (443)
.+.+|.++++++++.+.+.|
T Consensus 195 -~d~~a~g~~~al~~~g~~vP 214 (288)
T 2qu7_A 195 -NHLLLLGALQAIKESEKEIK 214 (288)
T ss_dssp -SHHHHHHHHHHHHHSSCCBT
T ss_pred -CcHHHHHHHHHHHHhCCCCC
Confidence 36778889999988754433
No 236
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*
Probab=25.18 E-value=1.8e+02 Score=31.44 Aligned_cols=80 Identities=21% Similarity=0.308 Sum_probs=48.8
Q ss_pred CCeEeecCCcEEEEEcchhHHHHHHHHHHHcCCCCCCeeeecCCCCH----HHHHHHHHHHHcCCCccEEEEEccC----
Q psy12143 288 SLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATA----AQVKEAFKIITADPKVCAIMVNIFG---- 359 (443)
Q Consensus 288 ~l~~~~~~g~iaiitngGG~g~la~D~~~~~G~~~~NPvDl~g~~~~----~~~~~al~~ll~dp~vd~vlv~i~~---- 359 (443)
+..|.++.+.|++||- .|| .+ ++.+ +.+.++++.+.+|+++.+|++...+
T Consensus 21 m~~~~~~~~~Va~itl-------------------nrP-~~--Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~ 78 (742)
T 3zwc_A 21 MAEYLRLPHSLAMIRL-------------------CNP-PV--NAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFC 78 (742)
T ss_dssp TEEEEECSTTEEEEEE-------------------CCT-TT--TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSB
T ss_pred ceeEEEeeCCEEEEEe-------------------CCC-cc--cCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCccc
Confidence 3467788899999983 444 22 2222 3478889999999999999884211
Q ss_pred -C--CCC-----hHHHHHHHHHHHHHcCCCCcEEEEeCCC
Q psy12143 360 -G--IMR-----CDVIAEGIIAAAQELSLKIPIICRLQGT 391 (443)
Q Consensus 360 -~--~~~-----~~~~a~~i~~~~~~~~~~kpiv~~~~g~ 391 (443)
| +.. ...-...+.+.... .+||+|+...|.
T Consensus 79 aGaDl~~~~~~~~~~~~~~~~~~i~~--~~kPvIAai~G~ 116 (742)
T 3zwc_A 79 AGADIHGFSAFTPGLALGSLVDEIQR--YQKPVLAAIQGV 116 (742)
T ss_dssp CCBCSSSCCSSCSCSHHHHHHHHHHH--CSSCEEEEECSE
T ss_pred cCcChHhhhccChhHHHHHHHHHHHh--CCCCEEEEECcc
Confidence 1 110 11122344444555 589999765443
No 237
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=25.17 E-value=4.2e+02 Score=24.64 Aligned_cols=99 Identities=14% Similarity=0.082 Sum_probs=58.4
Q ss_pred CeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC--CChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHH---
Q psy12143 324 NFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI--MRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKV--- 398 (443)
Q Consensus 324 NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~--~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~--- 398 (443)
-|.|=-|+.+.+.+.+-++.+.+ .++|+++++-..|. ....+=-..+++...+.. +. |++..++++..++++
T Consensus 9 TPf~~dg~iD~~~l~~lv~~li~-~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~-~g-ViaGvg~~~t~~ai~la~ 85 (288)
T 2nuw_A 9 TPFDKQGKVNVDALKTHAKNLLE-KGIDAIFVNGTTGLGPALSKDEKRQNLNALYDVT-HK-LIFQVGSLNLNDVMELVK 85 (288)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-TTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTTC-SC-EEEECCCSCHHHHHHHHH
T ss_pred cCCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHHHHHHHHHHHHh-CC-eEEeeCCCCHHHHHHHHH
Confidence 46655688888889999999887 47999998544442 222222344555555432 23 666666655566544
Q ss_pred HHHHCCC-------CcccC-CCHHHHHHHHHHHHH
Q psy12143 399 LIASAAM-------KILPC-DNLDEAARLAVKLSS 425 (443)
Q Consensus 399 ~L~~~Gi-------P~~~f-~s~e~Av~al~~l~~ 425 (443)
..++.|. |+|.- .+.+..++-+.++++
T Consensus 86 ~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~ 120 (288)
T 2nuw_A 86 FSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIAR 120 (288)
T ss_dssp HHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHH
Confidence 4555662 55322 466655555555544
No 238
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=25.10 E-value=1.6e+02 Score=27.31 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=41.2
Q ss_pred CcEEEEEcchhHHH-HHHHHHHHcCCCCCCeeeec-------CCCCHHHHHHHHHHHHcCCCccEEEEE
Q psy12143 296 GSIGCLVNGAGLAM-ATMDIIKLHGGEPANFLDVG-------GGATAAQVKEAFKIITADPKVCAIMVN 356 (443)
Q Consensus 296 g~iaiitngGG~g~-la~D~~~~~G~~~~NPvDl~-------g~~~~~~~~~al~~ll~dp~vd~vlv~ 356 (443)
++|+|+|...-.-- ...+.++.+|..+..|.... |..+.+.+.++++.+ .+++.|+|++.
T Consensus 147 ~rvgvltp~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l-~~~gadaIvLg 214 (273)
T 2xed_A 147 QRVALVTPYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSL-DLSEVDALVIS 214 (273)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHS-CCTTCSEEEEE
T ss_pred CeEEEEcCChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHH-hhCCCCEEEEc
Confidence 68999997775433 77799999996543332211 234455677777776 67899999986
No 239
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}
Probab=25.09 E-value=3.7e+02 Score=27.15 Aligned_cols=81 Identities=14% Similarity=0.116 Sum_probs=46.2
Q ss_pred CCcEEEEEcc---hhHHHHHHHHHHHcCCCCCCeeee-cCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHH
Q psy12143 295 DGSIGCLVNG---AGLAMATMDIIKLHGGEPANFLDV-GGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEG 370 (443)
Q Consensus 295 ~g~iaiitng---GG~g~la~D~~~~~G~~~~NPvDl-~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~ 370 (443)
.||..|+-.| --.+.+.++.+.++|..+. -+.+ +| .. ...+.++++|.+|.|. ++|+ ..+.+.
T Consensus 166 aGN~VVlKps~~tp~t~~~l~~l~~~aGlP~g-vv~vv~g--~~----~~~~~L~~~~~v~~V~--fTGS----~~~g~~ 232 (490)
T 3ju8_A 166 AGNCVVFKPSELTPKVAELTLKAWIQAGLPAG-VLNLVQG--GR----ETGVALAAHRGLDGLF--FTGS----SRTGNL 232 (490)
T ss_dssp HTCEEEEECCTTCHHHHHHHHHHHHHTTCCTT-TEEECCC--SH----HHHHHHHTCTTCSEEE--EESC----HHHHHH
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHHHhCcCcC-eEEEEeC--CH----HHHHHHHhCCCcCEEE--EECc----HHHHHH
Confidence 3555555333 2345667788888886543 2333 34 22 3456778999999877 3443 345566
Q ss_pred HHHHHHHcCCCCcEE-EEeCC
Q psy12143 371 IIAAAQELSLKIPII-CRLQG 390 (443)
Q Consensus 371 i~~~~~~~~~~kpiv-~~~~g 390 (443)
|.+.+.+ +.||++ .-++|
T Consensus 233 i~~~aa~--~~~~v~~lElGG 251 (490)
T 3ju8_A 233 LHSQFGG--QPQKILALEMGG 251 (490)
T ss_dssp HHHHTTT--CTTSEEEEECCC
T ss_pred HHHHhhc--cCCCcEEeecCC
Confidence 6555444 457773 33444
No 240
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=24.93 E-value=1e+02 Score=28.16 Aligned_cols=81 Identities=26% Similarity=0.201 Sum_probs=47.0
Q ss_pred CcEEEEEcchhHHH------HHHHHHHHcCCCCCCeeeecC---CCCHHH-H--HHHHHHHHcCCCccEEEEEccCCCCC
Q psy12143 296 GSIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGG---GATAAQ-V--KEAFKIITADPKVCAIMVNIFGGIMR 363 (443)
Q Consensus 296 g~iaiitngGG~g~------la~D~~~~~G~~~~NPvDl~g---~~~~~~-~--~~al~~ll~dp~vd~vlv~i~~~~~~ 363 (443)
++|++++...+... -..+++.++|.......-..+ +.+.+. + ..+.+.+...|.+++||+.
T Consensus 132 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~------- 204 (301)
T 3miz_A 132 RRIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQDDRPTAIMSG------- 204 (301)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTSTTCCSEEEES-------
T ss_pred CeEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHHHHcCCCCCcEEEEC-------
Confidence 46888875543321 134567777755322222233 333332 3 4444444457899999851
Q ss_pred hHHHHHHHHHHHHHcCCCCc
Q psy12143 364 CDVIAEGIIAAAQELSLKIP 383 (443)
Q Consensus 364 ~~~~a~~i~~~~~~~~~~kp 383 (443)
.+.+|.++.+++++.+...|
T Consensus 205 ~d~~A~g~~~al~~~g~~vP 224 (301)
T 3miz_A 205 NDEMAIQIYIAAMALGLRIP 224 (301)
T ss_dssp SHHHHHHHHHHHHTTTCCHH
T ss_pred CHHHHHHHHHHHHHcCCCCC
Confidence 37788999999998765544
No 241
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=24.77 E-value=1.8e+02 Score=25.08 Aligned_cols=78 Identities=15% Similarity=0.073 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHHcCCCCCCe-eeecCCCCHHHHHHHHHHHHcCCCccEEEEE-ccCCCCC----hHHHHHHHHHHHHHc
Q psy12143 305 AGLAMATMDIIKLHGGEPANF-LDVGGGATAAQVKEAFKIITADPKVCAIMVN-IFGGIMR----CDVIAEGIIAAAQEL 378 (443)
Q Consensus 305 GG~g~la~D~~~~~G~~~~NP-vDl~g~~~~~~~~~al~~ll~dp~vd~vlv~-i~~~~~~----~~~~a~~i~~~~~~~ 378 (443)
-.+.--+.|.+..+|.+...- +.+.|... +--+.+.+.+..++|+|+.. ..|+... |..++++|.+..-+
T Consensus 15 ~~Ll~gA~~~L~~~G~~~~i~~~~VPGafE---iP~aak~la~~~~yDavIaLG~VG~T~Hfd~Va~~vs~Gl~~v~L~- 90 (156)
T 2b99_A 15 VDMASIAIKKLKELSPNIKIIRKTVPGIKD---LPVACKKLLEEEGCDIVMALGMPGKAEKDKVCAHEASLGLMLAQLM- 90 (156)
T ss_dssp SCCHHHHHHHHHHHCTTCEEEEEEESSGGG---HHHHHHHHHHHSCCSEEEEEECCCSSHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEECCcHHH---HHHHHHHHHhcCCCCEEEEecccCCcchhHHHHHHHHHHHHHHHhh-
Confidence 445556789999999765311 23334332 33445666777889999972 2233333 34556677776555
Q ss_pred CCCCcEEEE
Q psy12143 379 SLKIPIICR 387 (443)
Q Consensus 379 ~~~kpiv~~ 387 (443)
+++||...
T Consensus 91 -~~vPV~~g 98 (156)
T 2b99_A 91 -TNKHIIEV 98 (156)
T ss_dssp -HTCCEEEE
T ss_pred -hCCCEEEE
Confidence 57999876
No 242
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH, isomerization, oxidoreductase; HET: NAD; 1.42A {Homo sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A* 1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A* 3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A* 3n81_A 3n82_A* 3n83_A* ...
Probab=24.64 E-value=3.6e+02 Score=27.34 Aligned_cols=84 Identities=21% Similarity=0.140 Sum_probs=48.7
Q ss_pred CCcEEEEEcch---hHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHH
Q psy12143 295 DGSIGCLVNGA---GLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGI 371 (443)
Q Consensus 295 ~g~iaiitngG---G~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i 371 (443)
.||..|+-.|- ..+...++.+.++|..+.-.-=+.|... ..-+.|.++|.+|.|. ++|+ ..+.+.|
T Consensus 185 aGN~VVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~-----~~g~~L~~~p~v~~I~--FTGS----~~~G~~i 253 (500)
T 1o04_A 185 TGNVVVMKVAEQTPLTALYVANLIKEAGFPPGVVNIVPGFGP-----TAGAAIASHEDVDKVA--FTGS----TEIGRVI 253 (500)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHTCCTTSEEECCBCTT-----THHHHHHTCTTCCEEE--EESC----HHHHHHH
T ss_pred cCCEEEEECCccChHHHHHHHHHHHHhCCCcCeEEEEecCcH-----HHHHHHHhCCCcCEEE--EECC----HHHHHHH
Confidence 45555553322 2466778888888865432222244221 1346677899999877 3443 3556666
Q ss_pred HHHHH-HcCCCCcEEEEeCCC
Q psy12143 372 IAAAQ-ELSLKIPIICRLQGT 391 (443)
Q Consensus 372 ~~~~~-~~~~~kpiv~~~~g~ 391 (443)
.+.+. + +-||++.-++|.
T Consensus 254 ~~~aa~~--~l~pv~lELGGk 272 (500)
T 1o04_A 254 QVAAGSS--NLKRVTLELGGK 272 (500)
T ss_dssp HHHHHHT--TCCEEEEECCCC
T ss_pred HHhhhhh--cCceEEEEcCCc
Confidence 66655 4 457777655554
No 243
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=24.42 E-value=1.3e+02 Score=27.05 Aligned_cols=50 Identities=16% Similarity=0.045 Sum_probs=28.6
Q ss_pred HHHHHHHHHHcCCCccEEEE--EccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCC
Q psy12143 336 QVKEAFKIITADPKVCAIMV--NIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGT 391 (443)
Q Consensus 336 ~~~~al~~ll~dp~vd~vlv--~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~ 391 (443)
.+...|..+.+++. +.|++ |.+||. ..-+..|.+..+. .++||++.+.|.
T Consensus 55 ~i~~~L~~l~~~~~-k~I~l~INSPGGs---v~a~~~I~~~i~~--~~~pV~t~v~g~ 106 (215)
T 2f6i_A 55 ELISQLLYLDNINH-NDIKIYINSPGGS---INEGLAILDIFNY--IKSDIQTISFGL 106 (215)
T ss_dssp HHHHHHHHHHHHCC-SCEEEEEEECCBC---HHHHHHHHHHHHH--SSSCEEEEEEEE
T ss_pred HHHHHHHHHHhCCC-CcEEEEEECCCCC---HHHHHHHHHHHHh--cCCCEEEEEeeE
Confidence 35555655544433 55444 778773 1234666777776 467887755543
No 244
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=24.34 E-value=3.7e+02 Score=27.30 Aligned_cols=72 Identities=24% Similarity=0.260 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEE
Q psy12143 307 LAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIIC 386 (443)
Q Consensus 307 ~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~ 386 (443)
.+...++++.++|..+.-.-=++|. . ..+-+.+.++|.+|.|. ++|+ ..+.+.|.+.+.+ +-||++.
T Consensus 193 t~~~l~~l~~~aGlP~gvv~vv~g~--~---~~~g~~L~~~~~v~~I~--FTGS----~~~G~~i~~~aa~--~l~~v~l 259 (503)
T 3iwj_A 193 TCLELGEICKEVGLPPGVLNILTGL--G---PEAGAPLATHPDVDKVA--FTGS----SATGSKIMTAAAQ--LVKPVSL 259 (503)
T ss_dssp HHHHHHHHHHHHTCCTTSEEECCSC--H---HHHTHHHHTCTTCCEEE--EESC----HHHHHHHHHHHGG--GTCCEEE
T ss_pred HHHHHHHHHHHhCcCcCeEEEEeCC--c---HHHHHHHhhCCCccEEE--EECc----HHHHHHHHHHHhc--CCCCEEE
Confidence 4566778888888654322222332 1 12355677899999877 3443 3455666666655 3577765
Q ss_pred EeCCC
Q psy12143 387 RLQGT 391 (443)
Q Consensus 387 ~~~g~ 391 (443)
-++|.
T Consensus 260 ElGGk 264 (503)
T 3iwj_A 260 ELGGK 264 (503)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 55543
No 245
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=24.33 E-value=52 Score=26.33 Aligned_cols=14 Identities=7% Similarity=-0.021 Sum_probs=10.2
Q ss_pred cEEEeCCHHHHHHH
Q psy12143 99 GVKMVDTPEEAEEV 112 (443)
Q Consensus 99 GV~l~~s~ee~~~a 112 (443)
.+.++.+++++.+.
T Consensus 99 ~~~vGf~~~~~~~~ 112 (114)
T 1rw1_A 99 RTLVGFKPDAYAAA 112 (114)
T ss_dssp CEEESCCHHHHHHH
T ss_pred EEEEeCCHHHHHHH
Confidence 46677888887654
No 246
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=24.33 E-value=1.8e+02 Score=27.49 Aligned_cols=104 Identities=14% Similarity=0.224 Sum_probs=58.3
Q ss_pred HHHHHHHcCCCCCC-eeeecCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCc--E-E
Q psy12143 311 TMDIIKLHGGEPAN-FLDVGGGATAAQ-VKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIP--I-I 385 (443)
Q Consensus 311 a~D~~~~~G~~~~N-PvDl~g~~~~~~-~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kp--i-v 385 (443)
..+++.++|..... ++-..+..+.+. +..+-+++...|.+++||+. .|.+|-++.+++++.+...| | |
T Consensus 228 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~-------nD~~A~g~~~al~~~G~~vP~disv 300 (366)
T 3h5t_A 228 AMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELLETHPDLTAVLCT-------VDALAFGVLEYLKSVGKSAPADLSL 300 (366)
T ss_dssp HHHHHHHHTCCGGGSCEEEESSCCHHHHHHHHHHHHHHCTTCCEEEES-------SHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHHCCCCCCcceEEEcCCCCHHHHHHHHHHHHcCCCCCcEEEEC-------CcHHHHHHHHHHHHcCCCCCCceEE
Confidence 45778888865432 343345666665 44444445567889999951 37889999999998765433 3 2
Q ss_pred EEeCCCCHHHHHHHHHHCCCCcccCCCHHHHHHHHHHHHHHH
Q psy12143 386 CRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAVKLSSIV 427 (443)
Q Consensus 386 ~~~~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~~l~~~~ 427 (443)
+.+.+. ..+. ..++-++..+..+-+-.++..|.+++
T Consensus 301 igfD~~--~~~~----~~~lttv~q~~~~~G~~Av~~L~~~i 336 (366)
T 3h5t_A 301 TGFDGT--HMAL----ARDLTTVIQPNKLKGFKAGETLLKMI 336 (366)
T ss_dssp EEEECC--HHHH----HTTCCEEECCHHHHHHHHHHHHHHHH
T ss_pred EEECCC--hhhc----CCCccEEEeCHHHHHHHHHHHHHHHh
Confidence 333332 2222 23454432333333444444555555
No 247
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP binding, oxidoreductase; HET: NAP; 2.30A {Escherichia coli}
Probab=24.33 E-value=3.4e+02 Score=27.27 Aligned_cols=72 Identities=18% Similarity=0.185 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEE
Q psy12143 307 LAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIIC 386 (443)
Q Consensus 307 ~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~ 386 (443)
.+...++++.++|..+.-.-=++|. . ...-+.+.++|.+|.|. ++|+ ..+.+.|.+.+.+ +-||++.
T Consensus 187 ~~~~l~~l~~~aGlP~gvv~vv~g~-~----~~~g~~L~~~p~v~~I~--fTGS----~~~g~~i~~~aa~--~~~~v~l 253 (481)
T 3jz4_A 187 SALALAELAIRAGVPAGVFNVVTGS-A----GAVGNELTSNPLVRKLS--FTGS----TEIGRQLMEQCAK--DIKKVSL 253 (481)
T ss_dssp HHHHHHHHHHHHTCCTTTEEECCBC-T----HHHHHHHHHCTTEEEEE--EESC----HHHHHHHHHHHTT--TTCEEEE
T ss_pred HHHHHHHHHHHhCcCCCeEEEEeCC-C----hHHHHHHHhCCCcCEEE--EECC----HHHHHHHHHHHhh--cCCceEE
Confidence 4566678888887653322222332 1 12345677899999877 3443 3456666666554 3577765
Q ss_pred EeCCC
Q psy12143 387 RLQGT 391 (443)
Q Consensus 387 ~~~g~ 391 (443)
-++|.
T Consensus 254 ElGGk 258 (481)
T 3jz4_A 254 ELGGN 258 (481)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 55553
No 248
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Probab=24.27 E-value=3.6e+02 Score=27.42 Aligned_cols=86 Identities=13% Similarity=0.056 Sum_probs=46.5
Q ss_pred CCcEEEEEcch---hHH-HHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHH
Q psy12143 295 DGSIGCLVNGA---GLA-MATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEG 370 (443)
Q Consensus 295 ~g~iaiitngG---G~g-~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~ 370 (443)
.||..|+-.|- -.+ .+.++++.++|..+.-.-=+.|+.. ..-+.|+++|.+|.|.. +|+ ..+.+.
T Consensus 175 aGN~VVlKps~~tp~t~~~~l~~ll~~aGlP~gvv~vv~g~~~-----~~g~~L~~~p~vd~I~f--TGS----~~~g~~ 243 (508)
T 3r64_A 175 VGNAVVIKPASDTPVTGGVIPARIFEEAGVPAGVISTVAGAGS-----EIGDHFVTHAVPKLISF--TGS----TPVGRR 243 (508)
T ss_dssp TTCEEEEECCTTCHHHHTHHHHHHHHTTTCCTTTEEECCCCTT-----TTHHHHHHCSSCSEEEE--ESC----HHHHHH
T ss_pred cCCEEEEECCCCChHHHHHHHHHHHHHhCcCcCeEEEEeCCCH-----HHHHHHhhCCCccEEEE--ECC----HHHHHH
Confidence 45655554332 223 5667888888865432222234311 12456678999998773 443 345566
Q ss_pred HHHHHHHcCCCCcEEEEeCCC
Q psy12143 371 IIAAAQELSLKIPIICRLQGT 391 (443)
Q Consensus 371 i~~~~~~~~~~kpiv~~~~g~ 391 (443)
|.+.+.+.++-||++.-++|.
T Consensus 244 i~~~aa~~~~l~~v~lElGGk 264 (508)
T 3r64_A 244 VGELAINGGPMKTVALELGGN 264 (508)
T ss_dssp HHHHHHSSSSCCEEEEECCCC
T ss_pred HHHHhhcccCCCceEeecCCc
Confidence 666554311346766555553
No 249
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=24.23 E-value=3.4e+02 Score=24.12 Aligned_cols=123 Identities=11% Similarity=-0.003 Sum_probs=62.3
Q ss_pred CcEEEEEcchhHHHH------HHHHHHHcC-CCCCCeee-ecCCCCHHH-HHHHHHHHHcCC---CccEEEEEccCCCCC
Q psy12143 296 GSIGCLVNGAGLAMA------TMDIIKLHG-GEPANFLD-VGGGATAAQ-VKEAFKIITADP---KVCAIMVNIFGGIMR 363 (443)
Q Consensus 296 g~iaiitngGG~g~l------a~D~~~~~G-~~~~NPvD-l~g~~~~~~-~~~al~~ll~dp---~vd~vlv~i~~~~~~ 363 (443)
++|++++..-+.... ..+++..+| .+..++.. ..++.+.+. +..+.+.+.+.| ++++|++.
T Consensus 126 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~------- 198 (291)
T 3l49_A 126 GNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAIWAC------- 198 (291)
T ss_dssp EEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCEEEES-------
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCCcCEEEEC-------
Confidence 469999654332211 235666663 33122211 123334444 455555566778 89999851
Q ss_pred hHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCc--ccCCCHH-HHHHHHHHHHHHH
Q psy12143 364 CDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKI--LPCDNLD-EAARLAVKLSSIV 427 (443)
Q Consensus 364 ~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~--~~f~s~e-~Av~al~~l~~~~ 427 (443)
.+.+|.++.+++++.+...--|+.+.+ .....+.+.+.--|. .+..+++ -+-.++..|.+++
T Consensus 199 ~d~~a~g~~~al~~~g~~di~vvg~d~--~~~~~~~i~~~~~p~lttv~~~~~~~g~~av~~l~~~i 263 (291)
T 3l49_A 199 WDVPMIGATQALQAAGRTDIRTYGVDG--SPEFVEMVADPESPAGAVAAQQPSEIGKLAVQNVARHL 263 (291)
T ss_dssp SHHHHHHHHHHHHHTTCCSCEEEEEEC--CHHHHHHHHCTTSCEEEEEECCHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHcCCCCeEEEEecC--CHHHHHHHHCCCCCeEEEEecCHHHHHHHHHHHHHHHh
Confidence 377889999999986543212223333 334555554432232 2233443 3444444555555
No 250
>1vkm_A Conserved hypothetical protein TM1464; indigoidine synthase A-like fold, structural genomics, joint for structural genomics, JCSG; HET: MSE UNL; 1.90A {Thermotoga maritima} SCOP: c.138.1.1
Probab=24.19 E-value=96 Score=29.62 Aligned_cols=17 Identities=12% Similarity=0.384 Sum_probs=13.5
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy12143 410 CDNLDEAARLAVKLSSI 426 (443)
Q Consensus 410 f~s~e~Av~al~~l~~~ 426 (443)
+++++++++.+..-.++
T Consensus 201 ~d~~~e~A~~~~~~~~l 217 (297)
T 1vkm_A 201 IENVEEVLKIYESMKEM 217 (297)
T ss_dssp ECSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 68999999988766655
No 251
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST genomics of infectious diseases, oxidoreductase, csgid; 1.85A {Salmonella typhimurium} PDB: 3efv_A
Probab=24.06 E-value=4.9e+02 Score=25.87 Aligned_cols=82 Identities=20% Similarity=0.204 Sum_probs=46.1
Q ss_pred CCcEEEEEcc---hhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHH
Q psy12143 295 DGSIGCLVNG---AGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGI 371 (443)
Q Consensus 295 ~g~iaiitng---GG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i 371 (443)
.||..|+-.| --.+...++.+.+.|..+.=.-=+.| ..+ ..+.++++|.+|.|. ++|+ ..+.+.|
T Consensus 153 aGN~VvlKps~~tp~~~~~l~~~l~~aglP~gv~~vv~g--~~~----~~~~l~~~~~v~~v~--fTGS----~~~g~~i 220 (462)
T 3etf_A 153 AGNSYLLKHAPNVTGCAQMIARILAEAGTPAGVYGWVNA--NNE----GVSQMINDPRIAAVT--VTGS----VRAGAAI 220 (462)
T ss_dssp TTCEEEEECCTTCHHHHHHHHHHHHHTTCCBTTEEECCC--CHH----HHHHHHTSTTEEEEE--EESC----HHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHHHHHhCCCcCeEEEEEC--CHH----HHHHHhcCCCCCEEE--EeCC----chHHHHH
Confidence 3554444332 22456677888888865432111233 222 245678899999877 3443 3556677
Q ss_pred HHHHHHcCCCCcEEEEeCC
Q psy12143 372 IAAAQELSLKIPIICRLQG 390 (443)
Q Consensus 372 ~~~~~~~~~~kpiv~~~~g 390 (443)
.+.+.+ +-||++.-++|
T Consensus 221 ~~~aa~--~~~~v~lElGG 237 (462)
T 3etf_A 221 GAQAGA--ALKKCVLELGG 237 (462)
T ss_dssp HHHHHH--TTCCEEEECCC
T ss_pred HHHHhc--cCCceEEEcCC
Confidence 666665 34666654444
No 252
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=24.05 E-value=67 Score=31.32 Aligned_cols=74 Identities=19% Similarity=0.148 Sum_probs=42.0
Q ss_pred CCcEEEEEcchhHH---------HHHHHHHHHcCCCCCCe---e---eecCCCCHHHHHHHHHHHHcCCCccEEEEEccC
Q psy12143 295 DGSIGCLVNGAGLA---------MATMDIIKLHGGEPANF---L---DVGGGATAAQVKEAFKIITADPKVCAIMVNIFG 359 (443)
Q Consensus 295 ~g~iaiitngGG~g---------~la~D~~~~~G~~~~NP---v---Dl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~ 359 (443)
..+|+|++.|+|.. -.+...++..|.++... . +.....+.++ .+-|..+++||+||+|+....|
T Consensus 5 ~D~I~ivaPSs~~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~R-a~dL~~a~~Dp~i~aI~~~rGG 83 (346)
T 4eys_A 5 VSTIGIVSLSSGIIGEDFVKHEVDLGIQRLKDLGLNPIFLPHSLKGLDFIKDHPEAR-AEDLIHAFSDDSIDMILCAIGG 83 (346)
T ss_dssp CCEEEEECSSCCGGGSGGGHHHHHHHHHHHHHTTCEEEECTTTTSCHHHHHHCHHHH-HHHHHHHHHCTTCCEEEECCCC
T ss_pred CcEEEEEeCCCcccccccCHHHHHHHHHHHHhCCCEEEECCchhccCCccCCCHHHH-HHHHHHHhhCCCCCEEEEcccc
Confidence 36799999998853 34567888889653211 0 1111111222 3335566789999999974433
Q ss_pred CCCChHHHHHHH
Q psy12143 360 GIMRCDVIAEGI 371 (443)
Q Consensus 360 ~~~~~~~~a~~i 371 (443)
-. +-.+...|
T Consensus 84 ~g--~~rlLp~L 93 (346)
T 4eys_A 84 DD--TYRLLPYL 93 (346)
T ss_dssp SC--GGGGHHHH
T ss_pred cC--HHHHHHHh
Confidence 22 33444444
No 253
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=23.98 E-value=2.3e+02 Score=25.51 Aligned_cols=78 Identities=12% Similarity=0.067 Sum_probs=46.5
Q ss_pred CcEEEEEcchhHHH------HHHHHHHHcCCCCCCeee-ecCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHH
Q psy12143 296 GSIGCLVNGAGLAM------ATMDIIKLHGGEPANFLD-VGGGATAAQVKEAFKIIT-ADPKVCAIMVNIFGGIMRCDVI 367 (443)
Q Consensus 296 g~iaiitngGG~g~------la~D~~~~~G~~~~NPvD-l~g~~~~~~~~~al~~ll-~dp~vd~vlv~i~~~~~~~~~~ 367 (443)
++|++++...+... -..+++..+|. ++.. ..++.+.+.-.++++.++ +.|.+++||+. .+.+
T Consensus 139 ~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~ 208 (293)
T 2iks_A 139 ETVLYLGALPELSVSFLREQGFRTAWKDDPR---EVHFLYANSYEREAAAQLFEKWLETHPMPQALFTT-------SFAL 208 (293)
T ss_dssp SSEEEEEECTTSHHHHHHHHHHHHHHTTCCC---CEEEEEESSSCHHHHHHHHHHHTTTSCCCSEEEES-------SHHH
T ss_pred CEEEEEecCcccccHHHHHHHHHHHHHHcCC---CccEEEcCCCChhhHHHHHHHHHhcCCCCCEEEEC-------ChHH
Confidence 57999976533211 12345555553 3322 245666665555555555 45789999851 3678
Q ss_pred HHHHHHHHHHcCCCCc
Q psy12143 368 AEGIIAAAQELSLKIP 383 (443)
Q Consensus 368 a~~i~~~~~~~~~~kp 383 (443)
|.++++++++.+...|
T Consensus 209 a~g~~~al~~~g~~vP 224 (293)
T 2iks_A 209 LQGVMDVTLRRDGKLP 224 (293)
T ss_dssp HHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHcCCCCC
Confidence 8899998888654433
No 254
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD, NADP complex, oxidoreductase; HET: NAP CSO; 2.10A {Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A* 2xdr_A*
Probab=23.95 E-value=3.9e+02 Score=26.91 Aligned_cols=83 Identities=19% Similarity=0.204 Sum_probs=46.1
Q ss_pred CCcEEEEEcc---hhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHH
Q psy12143 295 DGSIGCLVNG---AGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGI 371 (443)
Q Consensus 295 ~g~iaiitng---GG~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i 371 (443)
.||..|+-.| --.+...++.+.+.|..+.-.-=++|... ..-+.+.++|.+|.|. ++|+ ..+.+.|
T Consensus 169 aGN~vVlKps~~tp~t~~~l~~l~~~aGlP~gvv~vv~g~~~-----~~~~~L~~~p~vd~v~--fTGS----~~~g~~i 237 (490)
T 2ve5_A 169 AGNAMIFKPSEVTPLTALKLAEIYTEAGVPDGVFNVLTGSGR-----EVGQWLTEHPLIEKIS--FTGG----TSTGKKV 237 (490)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHTCCTTSEEECCSCTT-----THHHHHHHCTTCCEEE--EESC----HHHHHHH
T ss_pred cCCEEEEECCCcchHHHHHHHHHHHHhCcCcCeEEEEeCCCh-----HHHHHHHhCCCcCEEE--EeCC----cHHHHHH
Confidence 4555555333 23466777888888865432222344221 1345667899999877 3443 3455666
Q ss_pred HHHH-HHcCCCCcEEEEeCC
Q psy12143 372 IAAA-QELSLKIPIICRLQG 390 (443)
Q Consensus 372 ~~~~-~~~~~~kpiv~~~~g 390 (443)
.+.+ .+ .-||++.-++|
T Consensus 238 ~~~a~a~--~l~~v~lElGG 255 (490)
T 2ve5_A 238 MASASSS--SLKEVTMELGG 255 (490)
T ss_dssp HHHHHHH--HCCEEEEECCC
T ss_pred HHhchhc--cccceEEEcCC
Confidence 5555 44 24666554444
No 255
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=23.69 E-value=1.4e+02 Score=27.33 Aligned_cols=78 Identities=14% Similarity=0.026 Sum_probs=43.6
Q ss_pred CcEEEEEcchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHH-HHcCCCccEEEEEccCCCCChHHHH
Q psy12143 296 GSIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKI-ITADPKVCAIMVNIFGGIMRCDVIA 368 (443)
Q Consensus 296 g~iaiitngGG~g~------la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~-ll~dp~vd~vlv~i~~~~~~~~~~a 368 (443)
++|++++...+... -..+++.++|..... + +.++.+. .+..+-+. +.+.|.+++||+. .|.+|
T Consensus 145 ~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~-~-~~~~~~~-~~~~~~~~~l~~~~~~~ai~~~-------nd~~A 214 (305)
T 3huu_A 145 RHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDC-V-VIKSMND-LRDFIKQYCIDASHMPSVIITS-------DVMLN 214 (305)
T ss_dssp CSEEEEEESSCBHHHHHHHHHHHHHHHHTTCCCCE-E-EECSHHH-HHHHC--------CCCSEEEES-------SHHHH
T ss_pred CeEEEEcCCcccchhHHHHHHHHHHHHHcCCCccc-E-EecCcHH-HHHHHHHhhhcCCCCCCEEEEC-------ChHHH
Confidence 56999976543221 134677777755433 2 3333333 33333334 4457899999851 37889
Q ss_pred HHHHHHHHHcCCCCc
Q psy12143 369 EGIIAAAQELSLKIP 383 (443)
Q Consensus 369 ~~i~~~~~~~~~~kp 383 (443)
-++.+++++.+...|
T Consensus 215 ~g~~~al~~~g~~vP 229 (305)
T 3huu_A 215 MQLLNVLYEYQLRIP 229 (305)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcCCCCC
Confidence 999999998765444
No 256
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.4A {Thermus thermophilus} SCOP: c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A* 2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A 2iy6_A* 2j40_A* 2j5n_A*
Probab=23.19 E-value=3.9e+02 Score=27.21 Aligned_cols=86 Identities=16% Similarity=0.095 Sum_probs=48.0
Q ss_pred CCcEEEEEcch---hHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHH
Q psy12143 295 DGSIGCLVNGA---GLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGI 371 (443)
Q Consensus 295 ~g~iaiitngG---G~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i 371 (443)
.||-.|+=.|- -.+...++.+.++|..+.-.-=++|... ..-+.|+++|.+|.|. ++|+ ..+.+.|
T Consensus 200 aGN~VVlKps~~tp~ta~~l~~l~~eaGlP~gvv~vv~g~~~-----~~~~~L~~~~~v~~I~--FTGS----~~~G~~i 268 (516)
T 1uzb_A 200 VGNTVIAKPAEDAVVVGAKVFEIFHEAGFPPGVVNFLPGVGE-----EVGAYLVEHPRIRFIN--FTGS----LEVGLKI 268 (516)
T ss_dssp TTCEEEEECCGGGHHHHHHHHHHHHHHTCCTTSEEECCCSSS-----HHHHHHHTCTTCCEEE--EESC----HHHHHHH
T ss_pred cCCeEEEeCCCCCHHHHHHHHHHHHHhCCCcCeEEEEeCCCc-----hhhhhhhcCCCcCEEE--ecCC----HHHHHHH
Confidence 45555553332 2355677888888865432222234222 2346677899999877 3443 3556666
Q ss_pred HHHHHHc----CCCCcEEEEeCCC
Q psy12143 372 IAAAQEL----SLKIPIICRLQGT 391 (443)
Q Consensus 372 ~~~~~~~----~~~kpiv~~~~g~ 391 (443)
.+.+.+. .+-||++.-++|.
T Consensus 269 ~~~aa~~~~~~~~~~~v~lElGGk 292 (516)
T 1uzb_A 269 YEAAGRLAPGQTWFKRAYVETGGK 292 (516)
T ss_dssp HHHHTSCCTTCCSCCEEEEECCCC
T ss_pred HHHhhhccccccccceeEEecCCc
Confidence 6655410 1357777655554
No 257
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1
Probab=23.08 E-value=1.4e+02 Score=26.61 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=34.2
Q ss_pred eeecCCCCHH---HHHHHHHHHHcCCCccEEEE--EccCCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCC
Q psy12143 326 LDVGGGATAA---QVKEAFKIITADPKVCAIMV--NIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGT 391 (443)
Q Consensus 326 vDl~g~~~~~---~~~~al~~ll~dp~vd~vlv--~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~ 391 (443)
+-++|..+.. .+...|..+.+++..+.|++ |.+||. ..-+..|.+..+. .++||++.+.|.
T Consensus 33 I~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~INSpGG~---v~~~~~I~~~i~~--~~~~v~t~~~G~ 98 (201)
T 3p2l_A 33 VFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGM---VTAGMGVYDTMQF--IKPDVSTICIGL 98 (201)
T ss_dssp EEEESCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBC---HHHHHHHHHHHHH--SSSCEEEEEEEE
T ss_pred EEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCC---HHHHHHHHHHHHH--hCCCeEEEEcCE
Confidence 3445555543 35555665555554554443 777773 1234566677776 467887755543
No 258
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=23.03 E-value=1.8e+02 Score=28.04 Aligned_cols=78 Identities=10% Similarity=0.006 Sum_probs=41.9
Q ss_pred HHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEE-eCCCCHHHHH---HHHHHCCCCcccCCC--H
Q psy12143 340 AFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICR-LQGTNVDDAK---VLIASAAMKILPCDN--L 413 (443)
Q Consensus 340 al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~-~~g~~~~~~~---~~L~~~GiP~~~f~s--~ 413 (443)
.++.+++|+++|+|++..+.. .-++.+.++++ ..|+|++- ....+..++. +..++.|+.+.+... .
T Consensus 58 ~~~~ll~~~~~D~V~i~tp~~-----~H~~~~~~al~---aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~ 129 (364)
T 3e82_A 58 SPEAAVQHPDVDLVVIASPNA-----THAPLARLALN---AGKHVVVDKPFTLDMQEARELIALAEEKQRLLSVFHNRRW 129 (364)
T ss_dssp CHHHHHTCTTCSEEEECSCGG-----GHHHHHHHHHH---TTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCCCTT
T ss_pred CHHHHhcCCCCCEEEEeCChH-----HHHHHHHHHHH---CCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEeeccc
Confidence 367778899999999753321 11233344444 36887763 2333444543 456678876533211 1
Q ss_pred HHHHHHHHHHHH
Q psy12143 414 DEAARLAVKLSS 425 (443)
Q Consensus 414 e~Av~al~~l~~ 425 (443)
..+++.+.++.+
T Consensus 130 ~p~~~~~~~~i~ 141 (364)
T 3e82_A 130 DSDYLGIRQVIE 141 (364)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 234555555544
No 259
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=22.98 E-value=64 Score=33.91 Aligned_cols=53 Identities=11% Similarity=0.209 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHcCCCccEEEEE--ccC-C-CCChHHHHHHHHHHHHHcCCCCcEEEEe
Q psy12143 333 TAAQVKEAFKIITADPKVCAIMVN--IFG-G-IMRCDVIAEGIIAAAQELSLKIPIICRL 388 (443)
Q Consensus 333 ~~~~~~~al~~ll~dp~vd~vlv~--i~~-~-~~~~~~~a~~i~~~~~~~~~~kpiv~~~ 388 (443)
+.+.+...|+...+||++++|++. .++ + ......+.+.|.+. ++ .+||++++.
T Consensus 71 ~~~~i~~~L~~a~~d~~ik~I~L~inspGgG~v~~~~~I~~~i~~~-k~--~gkpvva~~ 127 (593)
T 3bf0_A 71 SLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKALKEF-RD--SGKPVYAVG 127 (593)
T ss_dssp EHHHHHHHHHHHHHCTTCCCEEEECTEEEECCHHHHHHHHHHHHHH-HH--TTCCEEEEE
T ss_pred CHHHHHHHHHHHHhCCCceEEEEEeCCCCCCcHHHHHHHHHHHHHH-Hh--cCCeEEEEE
Confidence 456688889998899999999984 455 4 33345555665554 22 369998764
No 260
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious disease, ssgcid, seattle structural genomi for infectious disease; 2.70A {Burkholderia pseudomallei} PDB: 3ifh_Q
Probab=22.95 E-value=4.2e+02 Score=26.73 Aligned_cols=71 Identities=21% Similarity=0.209 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHcCCCCCCeeee-cCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEE
Q psy12143 307 LAMATMDIIKLHGGEPANFLDV-GGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPII 385 (443)
Q Consensus 307 ~g~la~D~~~~~G~~~~NPvDl-~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv 385 (443)
.+...++++.++|..+. -+.+ +|. . ..+-+.|.+||.+|.|. ++|+ ..+.+.|.+.+.+ +-||++
T Consensus 190 t~~~l~~l~~~aGlP~g-v~~vv~g~--~---~~~g~~L~~~p~v~~v~--FTGS----~~~G~~i~~~aa~--~~k~v~ 255 (484)
T 3ifg_A 190 SALAMAFLAERAGVPKG-VLSVVIGD--P---KAIGTEITSNPIVRKLS--FTGS----TAVGRLLMAQSAP--TVKKLT 255 (484)
T ss_dssp HHHHHHHHHHHHTCCTT-SEEECCBC--H---HHHHHHHHHCTTCCEEE--EESC----HHHHHHHHHHTGG--GTCEEE
T ss_pred HHHHHHHHHHHhCCCcc-cEEEEeCC--C---HHHHHHHHhCCCcCEEE--EECC----HHHHHHHHHHhhc--cCCceE
Confidence 45677788888886532 2222 232 1 12455677899999877 3443 3455666665544 347776
Q ss_pred EEeCCC
Q psy12143 386 CRLQGT 391 (443)
Q Consensus 386 ~~~~g~ 391 (443)
.-++|.
T Consensus 256 lElGGk 261 (484)
T 3ifg_A 256 LELGGN 261 (484)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 555553
No 261
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=22.74 E-value=4.1e+02 Score=23.73 Aligned_cols=80 Identities=16% Similarity=0.202 Sum_probs=50.2
Q ss_pred CcEEEEEcchhHH-----HHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHH-cCCCccEEEEEccCCCCChHHHHH
Q psy12143 296 GSIGCLVNGAGLA-----MATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIIT-ADPKVCAIMVNIFGGIMRCDVIAE 369 (443)
Q Consensus 296 g~iaiitngGG~g-----~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll-~dp~vd~vlv~i~~~~~~~~~~a~ 369 (443)
++|++++...+.. --..+++.++|... ++.-+.++.+.+.-.++++.++ +.|.+++||+. .|.+|-
T Consensus 127 ~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~A~ 198 (289)
T 3k9c_A 127 RNIAHIDGADAPGGADRRAGFLAAMDRHGLSA-SATVVTGGTTETEGAEGMHTLLEMPTPPTAVVAF-------NDRCAT 198 (289)
T ss_dssp CSEEEECCTTSTTHHHHHHHHHHHHHHTTCGG-GEEEECCCSSHHHHHHHHHHHHTSSSCCSEEEES-------SHHHHH
T ss_pred CcEEEEeCCCCccHHHHHHHHHHHHHHCCCCC-CccEEECCCCHHHHHHHHHHHHcCCCCCCEEEEC-------ChHHHH
Confidence 4699997655431 11345667776542 2223446666666555555554 47899999851 378889
Q ss_pred HHHHHHHHcCCCCc
Q psy12143 370 GIIAAAQELSLKIP 383 (443)
Q Consensus 370 ~i~~~~~~~~~~kp 383 (443)
++.+++++.+...|
T Consensus 199 g~~~al~~~g~~vP 212 (289)
T 3k9c_A 199 GVLDLLVRSGRDVP 212 (289)
T ss_dssp HHHHHHHHTTCCTT
T ss_pred HHHHHHHHcCCCCC
Confidence 99999998765444
No 262
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=22.34 E-value=3.2e+02 Score=22.27 Aligned_cols=112 Identities=13% Similarity=-0.025 Sum_probs=58.1
Q ss_pred CCcEEEEEcchhHHHHHHHHHHHcCCCC-------------C---CeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEcc
Q psy12143 295 DGSIGCLVNGAGLAMATMDIIKLHGGEP-------------A---NFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIF 358 (443)
Q Consensus 295 ~g~iaiitngGG~g~la~D~~~~~G~~~-------------~---NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~ 358 (443)
+.+|.|+. +|..|...+..+...|.++ . +..-+.++..... .++.. .-.+.|.|++...
T Consensus 19 ~~~v~IiG-~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~---~l~~~-~~~~ad~Vi~~~~ 93 (155)
T 2g1u_A 19 SKYIVIFG-CGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFE---TLKEC-GMEKADMVFAFTN 93 (155)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHH---HHHTT-TGGGCSEEEECSS
T ss_pred CCcEEEEC-CCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHH---HHHHc-CcccCCEEEEEeC
Confidence 45677774 6889999999999998321 1 1111224433221 12211 0135677776332
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCcccCCCHHHHHHHHH
Q psy12143 359 GGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILPCDNLDEAARLAV 421 (443)
Q Consensus 359 ~~~~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~~~f~s~e~Av~al~ 421 (443)
. +.....+...++.....+.+++...+... .+.|.+.|+.+ +...+.+...+.
T Consensus 94 ~-----~~~~~~~~~~~~~~~~~~~iv~~~~~~~~---~~~l~~~G~~v--i~p~~~~a~~l~ 146 (155)
T 2g1u_A 94 D-----DSTNFFISMNARYMFNVENVIARVYDPEK---IKIFEENGIKT--ICPAVLMIEKVK 146 (155)
T ss_dssp C-----HHHHHHHHHHHHHTSCCSEEEEECSSGGG---HHHHHTTTCEE--ECHHHHHHHHHH
T ss_pred C-----cHHHHHHHHHHHHHCCCCeEEEEECCHHH---HHHHHHCCCcE--EcHHHHHHHHHH
Confidence 1 23334444555543334556555555432 34677889884 544444444443
No 263
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=22.06 E-value=1.4e+02 Score=27.05 Aligned_cols=63 Identities=22% Similarity=0.284 Sum_probs=34.3
Q ss_pred HHHHHHcCCCCCCeeeecCCCCHHH-HHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCC
Q psy12143 312 MDIIKLHGGEPANFLDVGGGATAAQ-VKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLK 381 (443)
Q Consensus 312 ~D~~~~~G~~~~NPvDl~g~~~~~~-~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~ 381 (443)
.+++.++|.......-..++.+.+. +..+.+.+.+.|.+++|++. .+.+|.++.+++++.+..
T Consensus 148 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a~g~~~al~~~g~~ 211 (291)
T 3egc_A 148 RAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALLTS-------SHRITEGAMQALNVLGLR 211 (291)
T ss_dssp HHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEEES-------SHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEEEC-------CcHHHHHHHHHHHHcCCC
Confidence 3566666654322212234444443 44444445467899999851 367888999999887654
No 264
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=21.63 E-value=1.1e+02 Score=29.21 Aligned_cols=59 Identities=22% Similarity=0.238 Sum_probs=33.9
Q ss_pred HHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEE-EeCCCCHHHHH---HHHHHCCCCc
Q psy12143 341 FKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIIC-RLQGTNVDDAK---VLIASAAMKI 407 (443)
Q Consensus 341 l~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~-~~~g~~~~~~~---~~L~~~GiP~ 407 (443)
++.+++||++|+|+|..+.. . =++...++++ .+|+|++ .....+..++. +..++.|+.+
T Consensus 86 ~~ell~~~~iDaV~IatP~~---~--H~~~a~~al~---aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l 148 (393)
T 4fb5_A 86 WRALIADPEVDVVSVTTPNQ---F--HAEMAIAALE---AGKHVWCEKPMAPAYADAERMLATAERSGKVA 148 (393)
T ss_dssp HHHHHHCTTCCEEEECSCGG---G--HHHHHHHHHH---TTCEEEECSCSCSSHHHHHHHHHHHHHSSSCE
T ss_pred HHHHhcCCCCcEEEECCChH---H--HHHHHHHHHh---cCCeEEEccCCcccHHHHHHhhhhHHhcCCcc
Confidence 67788999999999744322 1 1233333333 3677766 23344455553 4556677765
No 265
>2r3b_A YJEF-related protein; putative kinase in the ribokinase-like superfamily, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Enterococcus faecalis} PDB: 2r3e_A
Probab=21.62 E-value=47 Score=31.87 Aligned_cols=26 Identities=12% Similarity=0.086 Sum_probs=20.6
Q ss_pred CCcEEEEEc---chhHHHHHHHHHHHcCC
Q psy12143 295 DGSIGCLVN---GAGLAMATMDIIKLHGG 320 (443)
Q Consensus 295 ~g~iaiitn---gGG~g~la~D~~~~~G~ 320 (443)
.|+|.+|.. +||+|+++.=.....|+
T Consensus 44 ~G~vlvIaGsd~~~GA~ilA~~aal~~Ga 72 (310)
T 2r3b_A 44 FGRVVLIGGNRQYGGAIIMSTEACINSGA 72 (310)
T ss_dssp GCEEEEECCCSSSHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEECCCCCCcHHHHHHHHHHHhCc
Confidence 367888875 58999999888888884
No 266
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=21.59 E-value=4.4e+02 Score=23.56 Aligned_cols=120 Identities=14% Similarity=0.195 Sum_probs=61.7
Q ss_pred CcEEEEEcchhHHHH------HHHHHHHc-CCCCCCeee-ecCCCCHHHHHHHHH-HHHcCCCccEEEEEccCCCCChHH
Q psy12143 296 GSIGCLVNGAGLAMA------TMDIIKLH-GGEPANFLD-VGGGATAAQVKEAFK-IITADPKVCAIMVNIFGGIMRCDV 366 (443)
Q Consensus 296 g~iaiitngGG~g~l------a~D~~~~~-G~~~~NPvD-l~g~~~~~~~~~al~-~ll~dp~vd~vlv~i~~~~~~~~~ 366 (443)
++|++++..-+.... ..+++.++ |.+ +.+ ..++.+.+.-.++++ ++...|.+++||+. .|.
T Consensus 134 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~---~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~-------nD~ 203 (288)
T 1gud_A 134 GEVAIIEGKAGNASGEARRNGATEAFKKASQIK---LVASQPADWDRIKALDVATNVLQRNPNIKAIYCA-------NDT 203 (288)
T ss_dssp EEEEEEECSTTCHHHHHHHHHHHHHHHTCTTEE---EEEEEECTTCHHHHHHHHHHHHHHCTTCCEEEES-------SHH
T ss_pred CEEEEEeCCCCCchHhHHHHHHHHHHHhCCCcE---EEEeecCCccHHHHHHHHHHHHHhCCCceEEEEC-------CCc
Confidence 469998754332211 23455544 332 122 245666665444444 44456889999851 378
Q ss_pred HHHHHHHHHHHcCCCCcEE-EEeCCCCHHHHHHHHHHCCCCcccCCCHHH-HHHHHHHHHHHH
Q psy12143 367 IAEGIIAAAQELSLKIPII-CRLQGTNVDDAKVLIASAAMKILPCDNLDE-AARLAVKLSSIV 427 (443)
Q Consensus 367 ~a~~i~~~~~~~~~~kpiv-~~~~g~~~~~~~~~L~~~GiP~~~f~s~e~-Av~al~~l~~~~ 427 (443)
+|-++++++++.+.+.-|- +.+.+ .+.+...+....+-..+...+.+ +-.++..|.+++
T Consensus 204 ~A~g~~~al~~~G~~~dv~vvGfD~--~~~~~~~~~~p~~lttv~q~~~~~g~~a~~~l~~~i 264 (288)
T 1gud_A 204 MAMGVAQAVANAGKTGKVLVVGTDG--IPEARKMVEAGQMTATVAQNPADIGATGLKLMVDAE 264 (288)
T ss_dssp HHHHHHHHHHHTTCTTTSEEEEESC--CHHHHHHHHHTSSCEEEECCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCCCCCeEEEEeCC--CHHHHHHHHcCccEEEEEcCHHHHHHHHHHHHHHHH
Confidence 8999999999865432232 33333 34444444443321223445543 333334444544
No 267
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=21.50 E-value=5e+02 Score=24.18 Aligned_cols=99 Identities=14% Similarity=0.070 Sum_probs=58.2
Q ss_pred CeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCC--CChHHHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHH--
Q psy12143 324 NFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGI--MRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVL-- 399 (443)
Q Consensus 324 NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~--~~~~~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~-- 399 (443)
-|+|=-|+.+.+.+.+-++.+.+ .++|+++++-..|. +...+=-..+++...+.. +. |++..++.+..++++.
T Consensus 9 TPf~~dg~iD~~~l~~lv~~li~-~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~-~g-viaGvg~~~t~~ai~la~ 85 (293)
T 1w3i_A 9 TPFTKDNRIDKEKLKIHAENLIR-KGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVT-NK-IIFQVGGLNLDDAIRLAK 85 (293)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-TTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTC-SC-EEEECCCSCHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHHHHHHHHHHHHc-CC-EEEecCCCCHHHHHHHHH
Confidence 46655688888889999998887 57999998544442 222222344555555432 23 6666666566666543
Q ss_pred -HHHCCC-------CcccC-CCHHHHHHHHHHHHH
Q psy12143 400 -IASAAM-------KILPC-DNLDEAARLAVKLSS 425 (443)
Q Consensus 400 -L~~~Gi-------P~~~f-~s~e~Av~al~~l~~ 425 (443)
.++.|. |+|.- .+.+..++-+.++++
T Consensus 86 ~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~ 120 (293)
T 1w3i_A 86 LSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCE 120 (293)
T ss_dssp HGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCEEEEcCCCCCCCCCHHHHHHHHHHHHh
Confidence 344562 65322 466655555555443
No 268
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=21.45 E-value=1.3e+02 Score=29.11 Aligned_cols=77 Identities=12% Similarity=-0.045 Sum_probs=43.5
Q ss_pred HHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEE--eC-CCCHHHHHHHHHHCCCCcccCCCHHHHH
Q psy12143 341 FKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICR--LQ-GTNVDDAKVLIASAAMKILPCDNLDEAA 417 (443)
Q Consensus 341 l~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~--~~-g~~~~~~~~~L~~~GiP~~~f~s~e~Av 417 (443)
++.+++ +++++|++-.+|.+.-...+.+.|.++.+ ..+|||.. +. |. .. ....+.+.|+-.--.-+|+.|.
T Consensus 238 l~a~~~-~g~~GiVle~~G~Gn~p~~~~~~l~~a~~---~Gi~VV~~Src~~G~-V~-~~~~l~~~Gvi~~~dlt~ekAr 311 (334)
T 3nxk_A 238 AKALFE-HGTKGIVVAGSGAGSIHKNQKDVLKELLK---KGLKVVVSSRVVAGC-VA-VSDSDEKLGFISAEDLNPQKAR 311 (334)
T ss_dssp HHHHHH-TTCCEEEEEEBTTTBCCHHHHHHHHHHHT---TTCEEEEEESSSBSC-CC-CCHHHHHHTEEECTTCCHHHHH
T ss_pred HHHHHh-CCCCEEEEeeECCCCCcHHHHHHHHHHHH---CCCEEEEeCCCCCCc-cC-cccccccCCEEECCCCCHHHHH
Confidence 444444 67899998666543333566677766654 37888854 22 33 11 1124566776332244788777
Q ss_pred HHHHHH
Q psy12143 418 RLAVKL 423 (443)
Q Consensus 418 ~al~~l 423 (443)
-.|+.+
T Consensus 312 ikL~~~ 317 (334)
T 3nxk_A 312 VLLMLA 317 (334)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 269
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox control, apoptosis, NAD binding, oxidoreductase, PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Probab=21.42 E-value=3.9e+02 Score=27.39 Aligned_cols=74 Identities=16% Similarity=0.195 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcC----CCC
Q psy12143 307 LAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELS----LKI 382 (443)
Q Consensus 307 ~g~la~D~~~~~G~~~~NPvDl~g~~~~~~~~~al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~----~~k 382 (443)
.+...++++.+.|..++-.-=+.|... .+-+.|.++|.+|.|. ++|+ ..+.+.|.+.+.+.. .-|
T Consensus 214 ta~~l~~l~~eaGlP~gvv~vv~g~~~-----~~g~~L~~~p~v~~I~--FTGS----~~~G~~i~~~aa~~~~~~~~lk 282 (538)
T 3qan_A 214 VAAKFVEVLEDAGLPKGVINYVPGSGA-----EVGDYLVDHPKTSLIT--FTGS----KDVGVRLYERAAVVRPGQNHLK 282 (538)
T ss_dssp HHHHHHHHHHHTTCCTTSEEECCBCTT-----TTHHHHHHCTTEEEEE--EESC----HHHHHHHHHHHTSCCTTCCSCC
T ss_pred HHHHHHHHHHHhCCCCCeEEEEecCCH-----HHHHHHHhCCCcCEEE--EECC----HHHHHHHHHHhhhccccccccc
Confidence 456677788887765432222233211 1234567899999877 3443 355666666655420 047
Q ss_pred cEEEEeCCC
Q psy12143 383 PIICRLQGT 391 (443)
Q Consensus 383 piv~~~~g~ 391 (443)
|++.-++|.
T Consensus 283 pv~lELGGk 291 (538)
T 3qan_A 283 RVIVEMGGK 291 (538)
T ss_dssp EEEEECCCC
T ss_pred cEEEecCCC
Confidence 777666554
No 270
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=21.38 E-value=69 Score=25.81 Aligned_cols=14 Identities=14% Similarity=0.069 Sum_probs=10.0
Q ss_pred cEEEeCCHHHHHHH
Q psy12143 99 GVKMVDTPEEAEEV 112 (443)
Q Consensus 99 GV~l~~s~ee~~~a 112 (443)
.+.++.+++++.+.
T Consensus 104 ~~~vGf~~~~~~~~ 117 (120)
T 2kok_A 104 KLMVGFKPAQYEAY 117 (120)
T ss_dssp EEEECCCHHHHHHH
T ss_pred EEEEeCCHHHHHHH
Confidence 46677888887654
No 271
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=21.28 E-value=1.7e+02 Score=27.61 Aligned_cols=60 Identities=17% Similarity=0.075 Sum_probs=34.6
Q ss_pred HHHHHHcCCCccEEEEEccCCCCChHHHHHHHHHHHHHcCCCCcEEEE-eCCCCHHHHH---HHHHHCCCCc
Q psy12143 340 AFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICR-LQGTNVDDAK---VLIASAAMKI 407 (443)
Q Consensus 340 al~~ll~dp~vd~vlv~i~~~~~~~~~~a~~i~~~~~~~~~~kpiv~~-~~g~~~~~~~---~~L~~~GiP~ 407 (443)
.++.+++|+++|+|++..+.. .-++.+..+++ ..|+|++- ....+..++. +..++.|+.+
T Consensus 58 ~~~~ll~~~~~D~V~i~tp~~-----~h~~~~~~al~---aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~ 121 (329)
T 3evn_A 58 KLEDMLADESIDVIYVATINQ-----DHYKVAKAALL---AGKHVLVEKPFTLTYDQANELFALAESCNLFL 121 (329)
T ss_dssp CHHHHHTCTTCCEEEECSCGG-----GHHHHHHHHHH---TTCEEEEESSCCSSHHHHHHHHHHHHHTTCCE
T ss_pred CHHHHhcCCCCCEEEECCCcH-----HHHHHHHHHHH---CCCeEEEccCCcCCHHHHHHHHHHHHHcCCEE
Confidence 356677899999999744322 12233334443 36888763 2344444543 4556778765
No 272
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=20.36 E-value=1.4e+02 Score=29.91 Aligned_cols=50 Identities=22% Similarity=0.445 Sum_probs=31.2
Q ss_pred EEEEEeecCCCCCccccccCccCcEEEeCCHHHHHHH---HHHHhhchhhhhhcCCCCcccCeEEEEeeeC
Q psy12143 76 IVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEV---AGKMIGDYLITKQTGEKGRICNAVMVTERKY 143 (443)
Q Consensus 76 vVlK~~~~~~gk~k~~~~~~~~GGV~l~~s~ee~~~a---~~~l~~~~~~~~~~~~~g~~~~~vlVE~~v~ 143 (443)
|+||++ .|.-| =||..+.|.+|+... .+.-|... ..|..++.|+|||=+.
T Consensus 280 V~VKAD--aGTYG---------MGImtV~s~~ev~~LNrK~RnKM~~~-------Keg~~v~~VIIQEGV~ 332 (432)
T 3k1t_A 280 VIVKAD--AGTYG---------MGIMTVKSADDVRDLNRKQRNKMSVV-------KEGLKVSEVILQEGVY 332 (432)
T ss_dssp EEEEEE--CGGGC---------EEEEEESSGGGGSSCCHHHHHHHHCS-------SSSSCCCEEEEEECCC
T ss_pred EEEEcC--CCCCC---------ceEEEecCHHHHHHHhHHhhhhhhhc-------cCCCccceEEEecCcc
Confidence 899997 32111 177778899886542 22222211 1467789999999886
No 273
>3ny7_A YCHM protein, sulfate transporter; fatty acid biosynthesis(FAB), bicarbonate transport, anion T membrane protein, STAS domain, SLC26; HET: SXM; 1.92A {Escherichia coli}
Probab=20.17 E-value=3.2e+02 Score=21.44 Aligned_cols=68 Identities=10% Similarity=-0.093 Sum_probs=37.2
Q ss_pred CCccEEEEEccCCCCChH-HHHHHHHHHHHHcCCCCcEEEEeCCCCHHHHHHHHHHCCCCc-----ccCCCHHHHHHH
Q psy12143 348 PKVCAIMVNIFGGIMRCD-VIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKI-----LPCDNLDEAARL 419 (443)
Q Consensus 348 p~vd~vlv~i~~~~~~~~-~~a~~i~~~~~~~~~~kpiv~~~~g~~~~~~~~~L~~~GiP~-----~~f~s~e~Av~a 419 (443)
++.+.+++....- ...| .-...+....++...++.+ ++.+. .+..++.|+..|+.- ++|+|.++|+++
T Consensus 44 ~~~~~vilDl~~v-~~iDssgl~~L~~~~~~~~~g~~l--~l~~~-~~~v~~~l~~~gl~~~~~~~~i~~s~~~Al~~ 117 (118)
T 3ny7_A 44 EGKRIVILKWDAV-PVLDAGGLDAFQRFVKRLPEGCEL--RVCNV-EFQPLRTMARAGIQPIPGRLAFFPNRRAAMAD 117 (118)
T ss_dssp TTCSEEEEEEEEC-CCBCHHHHHHHHHHHHHCCTTCEE--EEECC-CHHHHHHHHHTTCCCBTTTEEEESSHHHHTTT
T ss_pred CCCcEEEEEcCCC-CeecHHHHHHHHHHHHHHHCCCEE--EEecC-CHHHHHHHHHcCChhhcChhhhcCCHHHHHhh
Confidence 3456777654332 1122 2235556666665323333 33343 245677888888631 138999998765
No 274
>3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer sandwich, unknown function; 2.50A {Streptococcus mutans}
Probab=20.14 E-value=51 Score=31.64 Aligned_cols=26 Identities=12% Similarity=-0.022 Sum_probs=20.7
Q ss_pred CCcEEEEEc---chhHHHHHHHHHHHcCC
Q psy12143 295 DGSIGCLVN---GAGLAMATMDIIKLHGG 320 (443)
Q Consensus 295 ~g~iaiitn---gGG~g~la~D~~~~~G~ 320 (443)
.|+|.+|.. +||+|+++.=.....|+
T Consensus 58 ~G~vlvIaGsd~~~GAgilA~~aal~~Ga 86 (311)
T 3bgk_A 58 FGRVLLIGGNYPYGGAIIMAALACVNSGA 86 (311)
T ss_dssp TCEEEEECCCTTCHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHhCc
Confidence 467888875 68999999888888874
Done!