RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12143
(443 letters)
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active
site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus
scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B*
2fpp_B* 1euc_B* 1eud_B*
Length = 395
Score = 627 bits (1620), Expect = 0.0
Identities = 199/391 (50%), Positives = 267/391 (68%), Gaps = 1/391 (0%)
Query: 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFK 93
+N+ E+ S L+ + G+ V F VA T EA E AK+LN K+IVLKAQ+LAGGRGKG F
Sbjct: 1 MNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFS 60
Query: 94 GGLKGGVKMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFM 153
GLKGGV + PE ++A +MIG L TKQT ++G N VMV E +E Y A +
Sbjct: 61 SGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAIL 120
Query: 154 MERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQALKVADAVGLKAK- 212
M+RS GPVL+ S QGGV+IEEVAA NP I E +DI GI QA ++A+ +G
Sbjct: 121 MDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPL 180
Query: 213 RDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDLR 272
++ A+ + K+Y LF+ DA+ +E+NP+ E G DAK+ FDDNAEFRQK +F +
Sbjct: 181 QNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMD 240
Query: 273 DWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGA 332
D S+ + E EAAK+ L YI LDG+I C VNGAGLAMAT DII L+GG+PANFLD+GGG
Sbjct: 241 DKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGV 300
Query: 333 TAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTN 392
+QV +AFK++TADPKV AI+VNIFGGI+ C +IA GI A +EL LK+P++ RL+GTN
Sbjct: 301 KESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTN 360
Query: 393 VDDAKVLIASAAMKILPCDNLDEAARLAVKL 423
V +A+ ++ ++ + I +L++AA+ AV
Sbjct: 361 VHEAQNILTNSGLPITSAVDLEDAAKKAVAS 391
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle,
heterotetramer, ligase, ATP-grAsp fold, R fold; HET:
COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4
PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B*
2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Length = 388
Score = 602 bits (1556), Expect = 0.0
Identities = 170/392 (43%), Positives = 238/392 (60%), Gaps = 8/392 (2%)
Query: 34 LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFK 93
+N+HE+ + L G+P P T +EA E A K+ V+K QV AGGRGK
Sbjct: 1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKA--- 57
Query: 94 GGLKGGVKMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFM 153
GGVK+V++ E+ A +G L+T QT G+ N ++V KE Y +
Sbjct: 58 ----GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAV 113
Query: 154 MERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQALKVADAVGLKAK- 212
++RS V +AS++GGV IE+VA E P I +D G Q ++A +GL+ K
Sbjct: 114 VDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGKL 173
Query: 213 RDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDLR 272
++ + + +F+ +D +LIEINP G+ LD K+ D NA FRQ L ++R
Sbjct: 174 VQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLREMR 233
Query: 273 DWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGA 332
D SQED +E +AA+ LNY+ALDG+IGC+VNGAGLAM TMDI+KLHGGEPANFLDVGGGA
Sbjct: 234 DQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGA 293
Query: 333 TAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTN 392
T +V EAFKII +D KV A++VNIFGGI+RCD+IA+GII A E+ + +P++ RL+G N
Sbjct: 294 TKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNN 353
Query: 393 VDDAKVLIASAAMKILPCDNLDEAARLAVKLS 424
+ +A + + I+ L +AA+ V
Sbjct: 354 AELGAKKLADSGLNIIAAKGLTDAAQQVVAAV 385
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET:
GDP; 2.35A {Thermus aquaticus}
Length = 397
Score = 514 bits (1326), Expect = 0.0
Identities = 158/409 (38%), Positives = 228/409 (55%), Gaps = 21/409 (5%)
Query: 35 NVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKG 94
N+HE+ + +L G+PVPP VA T +EA IA++ K +V+KAQV GGRGK
Sbjct: 2 NLHEYQAKEILARYGVPVPPGKVAYTPEEAKRIAEEFG-KRVVIKAQVHVGGRGKA---- 56
Query: 95 GLKGGVKMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMM 154
GGVK+ DTP+EA E A ++G + KG V+V E KEYY ++
Sbjct: 57 ---GGVKLADTPQEAYEKAQAILGMNI-------KGLTVKKVLVAEAVDIAKEYYAGLIL 106
Query: 155 ERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQALKVADAVGLKAKRD 214
+R+ VL+ S +GGV+IEEVAAE P AI +D G +A ++ GL+ +
Sbjct: 107 DRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDPHKGFRPFEAREMVKRAGLEGNLN 166
Query: 215 ITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDLRDW 274
A++L+ +Y + DAS+ EINP G DAK+ DDNA FR L +LR+
Sbjct: 167 KLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALFRHPDLAELREV 226
Query: 275 SQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATA 334
E EVEA+ + Y+ LDG+IG + NGAGL M T+D++ GG+PANFLD+GGGA A
Sbjct: 227 EAEHPLEVEASNYGFAYVKLDGNIGIIGNGAGLVMYTLDLVNRVGGKPANFLDIGGGAKA 286
Query: 335 AQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVD 394
V A K++ DP V + +NIFGGI R D +A+G+I A +E L P++ R+ GT +
Sbjct: 287 DVVYNALKVVLKDPDVKGVFINIFGGITRADEVAKGVIRALEEGLLTKPVVMRVAGTAEE 346
Query: 395 DAKVLIASAAMKILPCDNLDEAARLAVKLSSIVGLARAAKMEVNFEIPL 443
+AK L+ + + EAA++ V + A ++P+
Sbjct: 347 EAKKLLEGKPVYMY--PTSIEAAKVTVAMKG----GAAWLEFAPGDLPM 389
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid,
lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB:
3mwe_A*
Length = 425
Score = 390 bits (1005), Expect = e-134
Identities = 75/434 (17%), Positives = 142/434 (32%), Gaps = 60/434 (13%)
Query: 36 VHEHVSYTLLKEGGIPVPPFGVAKTK---------KEAGEIAKKLNIKDIVLKAQVLAGG 86
+ E LL + + L +++V+K L
Sbjct: 6 ISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKR 65
Query: 87 RGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKY--P 144
RGK G V + T + + +G G+ ++
Sbjct: 66 RGKL-------GLVGVNLTLDGVKSWLKPRLGQ---EATVGKATGFLKNFLIEPFVPHSQ 115
Query: 145 RKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQALKVA 204
+E+Y R G ++ +GGV++ +V A+ ++ VD + + +
Sbjct: 116 AEEFYVCIYATR--EGDYVLFHHEGGVDVGDVDAKAQKLLV--GVDEKLNPEDIKKHLLV 171
Query: 205 DAVGLKAKRDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFR 264
A K + A + ++ + + +EINP G + LD + D A++
Sbjct: 172 HAPEDKKEI--LASFISGLFNFYEDLYFTYLEINPLVVTKDGVYV-LDLAAKVDATADYI 228
Query: 265 QKALF-------------DLRDWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMAT 311
K + + D A L + G I +V G G ++
Sbjct: 229 CKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVY 288
Query: 312 MDIIKLHGG--EPANFLDVGGGATAAQVKEAFKII----TADPKVCAIMVNIFGGIMRCD 365
D I GG E AN+ + G + Q + K I T + ++ I G I
Sbjct: 289 SDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFT 348
Query: 366 VIA---EGIIAAAQELS-----LKIPIICRLQGTNVDDAKVLIASAAMKI-LPCDNLDEA 416
+A +GI+ A ++ ++ I R G N + ++ +P
Sbjct: 349 NVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHVFGTE 408
Query: 417 ARLAVKLSSIVGLA 430
+++IVG+A
Sbjct: 409 T----HMTAIVGMA 418
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp,
lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Length = 829
Score = 145 bits (368), Expect = 6e-38
Identities = 72/354 (20%), Positives = 131/354 (37%), Gaps = 52/354 (14%)
Query: 71 LNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDYLITKQTGEKG 130
L +++V+K L RGK G V + T + + +G G
Sbjct: 50 LLSQNLVVKPDQLIKRRGKL-------GLVGVNLTLDGVKSWLKPRLGQEA--TVGKATG 100
Query: 131 RICNAVMVTERKYP---RKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYE 187
+ N ++ E P +E+Y R G ++ +GGV++ +V A+
Sbjct: 101 FLKNFLI--EPFVPHSQAEEFYVCIYATRE--GDYVLFHHEGGVDVGDVDAK----AQKL 152
Query: 188 PVDITVGITKEQALKVADAVGLKAKRDITAEMLIKMYALFISKDASLIEINPYAEDATGN 247
V + + E K + K++I A + ++ + + +EINP G
Sbjct: 153 LVGVDEKLNPEDIKKHLLVHAPEDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGV 212
Query: 248 FFGLDAKMRFDDNAEFRQKALFDLRDW---------------SQEDAKEVEAAKHSLNYI 292
+ LD + D A++ K + ++ + DAK A L +
Sbjct: 213 YV-LDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKS--GASLKLTLL 269
Query: 293 ALDGSIGCLVNGAGLAMATMDIIKLHGG--EPANFLDVGGGATAAQVKE----AFKIITA 346
G I +V G G ++ D I GG E AN+ + G + Q + ++T
Sbjct: 270 NPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTR 329
Query: 347 DPKVCAIMVNIFGGIMRC-DVIA--EGIIAAAQE-----LSLKIPIICRLQGTN 392
+ ++ I G I +V A +GI+ A ++ ++ I R G N
Sbjct: 330 EKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPN 383
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 4e-07
Identities = 69/441 (15%), Positives = 127/441 (28%), Gaps = 170/441 (38%)
Query: 26 SWSQQKRNLNV-HEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLA 84
++S R L + H + + LL +P F +A +E + K L A
Sbjct: 3 AYS--TRPLTLSHGSLEHVLL----VPTASFFIASQLQE--QFNKILPEPTEGFAAD--- 51
Query: 85 GGRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDYLITK----QTGEKGRICNAVMVTE 140
D P E+ GK +G Y+ + + G+ ++ N +
Sbjct: 52 -------------------DEPTTPAELVGKFLG-YVSSLVEPSKVGQFDQVLNLCLT-- 89
Query: 141 RKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKE-- 198
F E + L G +I +AA+ L + D T+ TKE
Sbjct: 90 --------EF----ENCY----L-----EGNDIHALAAK-----LLQENDTTLVKTKELI 123
Query: 199 ----QALKVAD---------AVGLKAKRDITAEMLIKMYALF----ISKD--ASLIEI-- 237
A +A A+ +A + A ++ A+F + D L ++
Sbjct: 124 KNYITARIMAKRPFDKKSNSAL-FRAVGEGNA----QLVAIFGGQGNTDDYFEELRDLYQ 178
Query: 238 --NPYAED----ATGNFFGLDAKMRFDDNAEFRQKALFDLRDWSQEDAKEVEAAKHSLNY 291
+ D + L + D F Q ++ +W + + +Y
Sbjct: 179 TYHVLVGDLIKFSAETLSEL-IRTTLDAEKVFTQG--LNILEWLEN-----PSNTPDKDY 230
Query: 292 IALDGSIGCLVNGAGL-AMAT-MDIIKLHGGEPANFLDVGGGATAAQVKEAFKIITADPK 349
+ SI G+ +A + KL G P GAT
Sbjct: 231 LL---SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT---------------- 271
Query: 350 VCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKILP 409
++G++ A IA
Sbjct: 272 ----------------GHSQGLVTAV-----------------------AIAETDSW--- 289
Query: 410 CDNLDEAARLAVKLSSIVGLA 430
++ + R A+ + +G+
Sbjct: 290 -ESFFVSVRKAITVLFFIGVR 309
Score = 50.4 bits (120), Expect = 1e-06
Identities = 66/340 (19%), Positives = 109/340 (32%), Gaps = 115/340 (33%)
Query: 97 KG-GVKMVDTPEEAEEV---AGKMIGDYL------ITKQ---------TGEKGR-ICNAV 136
+G G+ + T + A++V A D I GEKG+ I
Sbjct: 1629 QGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI---- 1684
Query: 137 MVTERKYPRKEYYFAFMMERSFAGPVLIASSQGGVNIEEVAAENPSAILYEP----VDIT 192
+E Y A + E G + +N E+ ++ + + T
Sbjct: 1685 ---------RENYSAMIFETIVDGKLKTEKIFKEIN------EHSTSYTFRSEKGLLSAT 1729
Query: 193 VGITKEQ-ALKVADAVGLKAKRDITAEMLIKMYALFISKDA--SLIEINPYAEDATGNFF 249
T Q AL + A D+ ++ LI A F A SL E YA A
Sbjct: 1730 Q-FT--QPALT---LMEKAAFEDLKSKGLIPADATF----AGHSLGE---YA--A----- 1769
Query: 250 GLDAK---MRFDDNAE---FRQKALFDLRDWSQEDAKEVEAAKHSLNYIALD-GSIGCLV 302
L + M + E +R + Q E + + IA++ G +
Sbjct: 1770 -LASLADVMSIESLVEVVFYRGMTM-------QVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 303 NGAGLAMATMDIIKLHGG--EPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGG 360
+ L + K G E N+ +V Q V A G
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEIVNY-NVENQ----QY------------VAA------G- 1857
Query: 361 IMRCDVIA-EGIIAAAQELSL-KIPIICRLQGT-NVDDAK 397
D+ A + + + L KI II LQ + ++++ +
Sbjct: 1858 ----DLRALDTVTNVLNFIKLQKIDII-ELQKSLSLEEVE 1892
Score = 42.0 bits (98), Expect = 4e-04
Identities = 52/286 (18%), Positives = 89/286 (31%), Gaps = 105/286 (36%)
Query: 71 LNIKDIVL----KAQVLAGG-RGKG--------AFKGGLKGGVKMVDTPEEAEEVAGKMI 117
+I DIV+ + GG +GK F+ + G +K +E E +
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 118 GDYLITKQTGEKGRICNAVMVTERKYPRKEYYFA----FMMERS-FAGPVLIASSQGGVN 172
EKG + +A T+ F +ME++ F L S+G +
Sbjct: 1719 FR-------SEKG-LLSA---TQ---------FTQPALTLMEKAAFE--DL--KSKGLIP 1754
Query: 173 IEEVAA-----ENPSAILYEPVDITVGITKEQALKVADAVGLKAKRDITAEMLIKMYALF 227
+ A E +A L + + + V + R +T ++ + L
Sbjct: 1755 ADATFAGHSLGEY-AA-L-------ASLA--DVMSIESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 228 ISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDLRDWSQEDAKE----VE 283
S + +I INP ++ + E L+ + K VE
Sbjct: 1804 RS-NYGMIAINP-------------GRVAASFSQE-------ALQYVVERVGKRTGWLVE 1842
Query: 284 AAKHSLNY--------IALDGSIGCLVNGAGLAMAT--MDIIKLHG 319
NY A G + L T ++ IKL
Sbjct: 1843 IV----NYNVENQQYVAA--GDL------RALDTVTNVLNFIKLQK 1876
Score = 37.7 bits (87), Expect = 0.009
Identities = 51/333 (15%), Positives = 100/333 (30%), Gaps = 89/333 (26%)
Query: 147 EYYFAFMMERSFAGPV---LIASSQGG--VNIEEVAAENPSAILYEPVDITVGIT-KEQA 200
+ Y + P+ LI Q V ++ P E G T Q
Sbjct: 228 KDYLL-------SIPISCPLIGVIQLAHYVVTAKLLGFTPG----ELRSYLKGATGHSQG 276
Query: 201 LKVADAVGL----KAKRDITAEMLIKMYALFI---SKDA-SLIEINPYA-EDATGNFFGL 251
L A A+ ++ + + FI +A + P ED+ N G+
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAI--TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 252 DAKMRFDDNAEFRQKALFDLRDWSQED-AKEVEAAKHSLN-----YIALDGSIGCLVNG- 304
+ M + + +QE V L I+L VNG
Sbjct: 335 PSPM-------------LSISNLTQEQVQDYVNKTNSHLPAGKQVEISL-------VNGA 374
Query: 305 -----AGLAMATMDIIKLHGGEPANFLDVGGGATAAQVKEAF---KI--------ITADP 348
+G + L+G + Q + F K+ + + P
Sbjct: 375 KNLVVSGPPQS------LYGLNLT-LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS-P 426
Query: 349 KVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAKVLIASAAMKIL 408
++V I + D++ + A+++ +IP+ G+++ I+ + +
Sbjct: 427 FHSHLLVPASDLINK-DLVKNNVSFNAKDI--QIPVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 409 PCDNLD-EAARLAVKLSSIV-----GLARAAKM 435
+ E K + I+ G + +
Sbjct: 484 IRLPVKWETT-TQFKATHILDFGPGGASGLGVL 515
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 5e-06
Identities = 47/334 (14%), Positives = 89/334 (26%), Gaps = 121/334 (36%)
Query: 4 RSVTVLENVAKNTSLKALSAAPSWSQQK-----RNLNVHEHVSYTLLKEGGIPVPPFGVA 58
+ VL NV + A + K R V + +S I + +
Sbjct: 245 NCLLVLLNVQNAKAWNAFNL-----SCKILLTTRFKQVTDFLSAATTTH--ISLDHHSMT 297
Query: 59 KTKKEAGEI-AKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVDTPEEAEEV---AG 114
T E + K L+ + Q L P E
Sbjct: 298 LTPDEVKSLLLKYLDCR-----PQDL----------------------PREVLTTNPRRL 330
Query: 115 KMIG----DYLIT----KQTGEKGRICNAVMVT-ERKYPR--KEYYFAFMMERSFAGPVL 163
+I D L T K ++ + + P ++ + + F
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCD-KLTTIIESSLNVLEPAEYRKMFDRLSV---F----- 381
Query: 164 IASSQGGVNIEEVAAENPSAIL---------YEPVDITVGI---------TKEQALKVAD 205
+I P+ +L + + + + KE + +
Sbjct: 382 ----PPSAHI-------PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 206 -AVGLKAKRDITAEM---LIKMYAL---FISKDASLIEINPY--------------AEDA 244
+ LK K + + ++ Y + F S D ++ Y E
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 245 TG------NF-FGLDAKMRFDDNAEFRQKALFDL 271
T +F F L+ K+R D A ++ +
Sbjct: 491 TLFRMVFLDFRF-LEQKIRHDSTAWNASGSILNT 523
Score = 41.0 bits (95), Expect = 8e-04
Identities = 46/300 (15%), Positives = 86/300 (28%), Gaps = 75/300 (25%)
Query: 184 ILYEPVDITVGITKEQALKVADAVGLKAKRDITA---EMLIKMYALFISKDASLIEINPY 240
I+ + L++ + K + + E+L Y F+ + P
Sbjct: 54 IIMSKDAV------SGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-FLMSPIKTEQRQP- 105
Query: 241 AEDATGNFFGLDAKMRFDDNAEF------RQKALFDLRDWSQEDAKEVEAAKHSLNYIAL 294
T + ++ ++DN F R + LR E + +
Sbjct: 106 -SMMTRMYIEQRDRL-YNDNQVFAKYNVSRLQPYLKLRQALLELRPA--------KNVLI 155
Query: 295 DGSIGCLVNGAG---LAMATMDIIKLHGGEPAN-F-LDVGGGATAAQVKEAFK--IITAD 347
DG +G G +A+ K+ F L++ + V E + + D
Sbjct: 156 DGVLGS-----GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 348 PKVCAIMVNIFGGIMRCDVIAEG---IIAAAQ-ELSLKIPIICRLQGTNVDDAKVLIASA 403
P + + +R I ++ + E L ++ NV +AK
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL---LVLL----NVQNAKAW---N 260
Query: 404 AM----KIL-------PCDNLDEAARLAVKLSSIVG----------LARAAKMEVNFEIP 442
A KIL D L A + L L + ++P
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP-QDLP 319
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 46.6 bits (111), Expect = 9e-06
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 12/68 (17%)
Query: 44 LLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMV 103
K+ + V + + E + L + +++KA L G + G+ +
Sbjct: 116 AFKKYNVNTARHFVVRNENELKNALENLKLP-VIVKATDLQGSK-----------GIYIA 163
Query: 104 DTPEEAEE 111
EEA +
Sbjct: 164 KKEEEAID 171
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken
ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A
{Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Length = 457
Score = 41.4 bits (98), Expect = 4e-04
Identities = 24/126 (19%), Positives = 42/126 (33%), Gaps = 25/126 (19%)
Query: 303 NGAGLAMATMDIIKLHGGEPANF---------------------LDVGGGATAAQVKEAF 341
N G + T D + G + A +D+ A
Sbjct: 301 NAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTA 360
Query: 342 KIITADPKVCAIMVNIFGGIM---RCDVIAEGIIAAAQELSLKIPII-CRLQGTNVDDAK 397
K++ DP V ++ AEGII A +E++ + P++ + G + AK
Sbjct: 361 KLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYVSEKAK 420
Query: 398 VLIASA 403
L+
Sbjct: 421 ELLEKN 426
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 2.00A {Thermus thermophilus} SCOP:
c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Length = 280
Score = 39.3 bits (92), Expect = 0.002
Identities = 30/169 (17%), Positives = 58/169 (34%), Gaps = 29/169 (17%)
Query: 41 SYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGV 100
+ L + G+P P +A ++EA + + +VLK + G G+
Sbjct: 92 TSVALAKAGLPQPKTALATDREEALRLMEAFG-YPVVLKP--VIGSWGRLLAXXXXXXXX 148
Query: 101 KMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAG 160
+E + G + I + + GR +V ER + R +
Sbjct: 149 XXXXXXKEV--LGGFQHQLFYIQEYVEKPGRDIRVFVVGER--------AIAAIYRR-SA 197
Query: 161 PVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQALKVADAVGL 209
+ +++GG E +T + ++K A+AVG
Sbjct: 198 HWITNTARGGQ--------------AENCPLTEEV-ARLSVKAAEAVGG 231
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid
ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus
subtilis}
Length = 474
Score = 39.5 bits (92), Expect = 0.002
Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 13/97 (13%)
Query: 44 LLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMV 103
+ G+ T ++ +++ ++LK LA GV ++
Sbjct: 146 AFNKAGVKSIKNKRVTTLEDFRAALEEIGTP-LILKPTYLASSI-----------GVTLI 193
Query: 104 DTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTE 140
E AE+ + DYL + + + E
Sbjct: 194 TDTETAED-EFNRVNDYLKSINVPKAVTFEAPFIAEE 229
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp
domain, carbamoylphosphate synthase subunit (split gene
in MJ); 2.00A {Exiguobacterium sibiricum}
Length = 331
Score = 38.7 bits (90), Expect = 0.003
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 13/81 (16%)
Query: 42 YTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVK 101
Y GI E A ++ + + +K + + V+
Sbjct: 119 YEYCLRQGIAHARTYATMASFEEALAAGEVQLP-VFVKPRNGSASI-----------EVR 166
Query: 102 MVDTPEEAEEVAGKMIGDYLI 122
V+T EE E++ K D ++
Sbjct: 167 RVETVEEVEQLFSKN-TDLIV 186
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl
cysteine ligase domain, ATP-grAsp domain, HYB enzyme;
2.95A {Streptococcus agalactiae serogroup V}
Length = 750
Score = 38.7 bits (90), Expect = 0.003
Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 9/69 (13%)
Query: 22 SAAPSWSQQKRNLNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQ 81
P K V+ +L E P P +KEA ++ K IV+K
Sbjct: 476 YIVPLAMANK-------VVTKKILDEKHFPTPFGDEFTDRKEALNYFSQIQDKPIVVKP- 527
Query: 82 VLAGGRGKG 90
+ G G
Sbjct: 528 -KSTNFGLG 535
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national
on protein structural and functional analyses; 2.00A
{Pyrococcus horikoshii}
Length = 238
Score = 37.6 bits (88), Expect = 0.004
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 24/89 (26%)
Query: 38 EHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAK--------KLNIKDIVLKAQVLAGGRGK 89
E+ + +LK G+PVP +AKT EA E AK KL I+ K+
Sbjct: 22 EYEAKQVLKAYGLPVPEEKLAKTLDEALEYAKEIGYPVVLKLMSPQILHKSDA------- 74
Query: 90 GAFKGGLKGGVKM-VDTPEEAEEVAGKMI 117
V + + EE ++ ++
Sbjct: 75 --------KVVMLNIKNEEELKKKWEEIH 95
>3ln7_A Glutathione biosynthesis bifunctional protein GSH;
gamma-glutamylcysteine ligase domain, ATP-grAsp domain,
HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Length = 757
Score = 34.9 bits (80), Expect = 0.056
Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 37 HEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGL 96
++ V+ +L++ G VP + ++A + +V+K + G G F+ G+
Sbjct: 489 NKVVTKKVLQKAGFNVPQSVEFTSLEKAVASYALFENRAVVIKPKSTNYGLGITIFQQGV 548
Query: 97 KGGVKMVDTPEEAEE 111
+ E+ +
Sbjct: 549 Q-------NREDFAK 556
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl
5'-monophosphate synthetase...; ATP-grAsp superfamily,
ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus
jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A*
2r7m_A* 2r7n_A*
Length = 361
Score = 32.3 bits (73), Expect = 0.30
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 21/91 (23%)
Query: 42 YTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVK 101
LL+E G+ VP K + +I +++K GGR G
Sbjct: 129 GKLLREAGLRVP-----KKYESPEDIDGT-----VIVKFPGARGGR-----------GYF 167
Query: 102 MVDTPEEAEEVAGKMIGDYLITKQTGEKGRI 132
+ + EE + A + ++T + I
Sbjct: 168 IASSTEEFYKKAEDLKKRGILTDEDIANAHI 198
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2
PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A*
1jdb_B* 1kee_A* 1t36_A*
Length = 1073
Score = 32.1 bits (74), Expect = 0.44
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 44 LLKEGGIPVPPFGVAKTKKEAGEIAKKL 71
++ + P + A E AK++
Sbjct: 681 AVERLKLKQPANATVTAIEMAVEKAKEI 708
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-;
ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP
MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1
d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A*
1ez1_A*
Length = 391
Score = 31.4 bits (72), Expect = 0.52
Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 12/69 (17%)
Query: 43 TLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKM 102
+E +P + A ++ E + ++K + GK G
Sbjct: 119 LAAEELQLPTSTYRFADSESLFREAVADIGYP-CIVKP--VMSSSGK---------GQTF 166
Query: 103 VDTPEEAEE 111
+ + E+ +
Sbjct: 167 IRSAEQLAQ 175
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural
genomics, protein structure initiative; HET: XLF; 1.41A
{Alkaliphilus metalliredigens}
Length = 330
Score = 31.3 bits (72), Expect = 0.60
Identities = 9/64 (14%), Positives = 21/64 (32%), Gaps = 7/64 (10%)
Query: 320 GEPANFLDVGGGATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELS 379
+F++ ++E + I F D+ A ++ A ++
Sbjct: 202 DLEIDFIEFQHDFQVKMLEEDINSMKDIVNYDGI----FVF---NDIAAATVMRALKKRG 254
Query: 380 LKIP 383
+ IP
Sbjct: 255 VSIP 258
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp,
purine biosynthesis, antimicrobial, ATP-binding,
decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli}
SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A*
1b6s_A*
Length = 355
Score = 31.0 bits (71), Expect = 0.84
Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 13/72 (18%)
Query: 43 TLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKG-GVK 101
L + +P P+ + + E + +L ++K + GG G G
Sbjct: 85 QLFDKLHLPTAPWQLLAERSEWPAVFDRLGEL-AIVKRR-----------TGGYDGRGQW 132
Query: 102 MVDTPEEAEEVA 113
+ E + A
Sbjct: 133 RLRANETEQLPA 144
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural
genomics, riken structural genomics/proteomics in RSGI,
ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Length = 369
Score = 30.6 bits (70), Expect = 0.90
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 43 TLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKG-GVK 101
T + G+P PPF ++ E K++ + +LK + +GG G G
Sbjct: 102 TFFQGLGVPTPPFHPVDGPEDLEEGLKRVGLP-ALLKTR-----------RGGYDGKGQA 149
Query: 102 MVDTPEEAEEVAGKMIGDYLI 122
+V T EEA E + G LI
Sbjct: 150 LVRTEEEALEALKALGGRGLI 170
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural
genomics, protein structure initiative; 2.08A
{Lactobacillus plantarum WCFS1}
Length = 290
Score = 30.6 bits (70), Expect = 1.0
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 338 KEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIP 383
++A K + + I+ D+ A GI+ A +++P
Sbjct: 174 EQAMKAFGKNTDLTGIIAA-------SDMTAIGILNQASSFGIEVP 212
>1pvt_A Sugar-phosphate aldolase; structural genomics, PSI, protein
initiative, midwest center for structural genomics,
MCSG; 2.50A {Thermotoga maritima} SCOP: c.74.1.1
Length = 238
Score = 29.7 bits (67), Expect = 1.4
Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 19/116 (16%)
Query: 20 ALSAAPSWSQQKRNLNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLK 79
L + + + H + GI V F + + + +K KD VL
Sbjct: 133 TLMNLEEFQELLPKMMKI-HPEVLIFFPQGISVVEFEKPGSVELGLKTVEKSEGKDAVLW 191
Query: 80 AQ--VLAGGRG-KGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDYLITKQTGEKGRI 132
+ V+A G+ A+ D E E+ A ++ L G
Sbjct: 192 DKHGVVAFGKDVAEAY-----------DRVEILEKAA-EI---LLRVLSLGRNPTG 232
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 1.5
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 251 LDAKMRFDDNAEFRQKALFDLRDWSQEDAKEVEAAK 286
LDA + E+R+KA DL +W+Q +++VE K
Sbjct: 101 LDAASK-VMEQEWREKAKKDLEEWNQRQSEQVEKNK 135
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide
transferase; purine ribonucleotide biosynthesis; HET:
ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Length = 433
Score = 29.9 bits (68), Expect = 1.6
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 12/69 (17%)
Query: 43 TLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKM 102
TL+KE +P + A T E E +K+ KA + + G+ G
Sbjct: 127 TLVKEAKVPTSRYMYATTLDELYEACEKIGYP-CHTKAIMSSSGK-----------GSYF 174
Query: 103 VDTPEEAEE 111
V PE+ +
Sbjct: 175 VKGPEDIPK 183
>2v9l_A Rhamnulose-1-phosphate aldolase; entropy index, metal-binding,
oligomerization, zinc, lyase, class II, cytoplasm; HET:
PGO; 1.23A {Escherichia coli} PDB: 2uyv_A* 1ojr_A
2v9g_A* 1gt7_A* 2v9n_A* 2uyu_A* 2v9m_A* 2v9o_A 2v9e_A
2v9f_A 2v9i_A 2v29_A 2v2a_A* 2v2b_A
Length = 274
Score = 29.6 bits (66), Expect = 2.2
Identities = 17/117 (14%), Positives = 34/117 (29%), Gaps = 19/117 (16%)
Query: 20 ALSAAPSWSQQKRNLNVHE-HVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVL 78
AL+ + E ++ G+ + P+ V T A+++ +VL
Sbjct: 149 ALTYVLENDTAVFTRQLWEGSTECLVVFPDGVGILPWMVPGTDAIGQATAQEMQKHSLVL 208
Query: 79 KAQ--VLAGGRG-KGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDYLITKQTGEKGRI 132
V G F + AE+ A ++ + G +
Sbjct: 209 WPFHGVFGSGPTLDETF-----------GLIDTAEKSA-QV---LVKVYSMGGMKQT 250
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD
2210633, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Length = 275
Score = 29.4 bits (67), Expect = 2.3
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 318 HGGEPANFLDVGGGATAAQVKEAF-KIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQ 376
+ P +FL ++ E K++ D + A++ + + IA G +
Sbjct: 149 NYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALVCS-------HEEIAIGALFECH 201
Query: 377 ELSLKIP 383
LK+P
Sbjct: 202 RRVLKVP 208
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 2.6
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 33/62 (53%)
Query: 376 QELSLKIPIICRLQGTNVDDAKVLIASAAMKIL-PCDNLDEAARLAVKLSSIVGLARAAK 434
++ +LK +LQ A++K+ D A LA+K A
Sbjct: 18 EKQALK-----KLQ-------------ASLKLYAD----DSAPALAIK----------AT 45
Query: 435 ME 436
ME
Sbjct: 46 ME 47
Score = 28.4 bits (62), Expect = 2.6
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 18/47 (38%)
Query: 197 KEQALKVADAVGLKAKRDITAEMLIKMYALFISKD-ASLIEINPYAE 242
++QALK L+A +K+YA D A + I E
Sbjct: 18 EKQALK-----KLQAS--------LKLYA----DDSAPALAIKATME 47
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP
binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A*
3r5h_A*
Length = 389
Score = 29.1 bits (66), Expect = 3.4
Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 13/81 (16%)
Query: 43 TLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKG-GVK 101
+++ G+PV + + + +++ E +L+ VLK GG G G
Sbjct: 118 NAIEKAGLPVATYRLVQNQEQLTEAIAELSYP-SVLKTT-----------TGGYDGKGQV 165
Query: 102 MVDTPEEAEEVAGKMIGDYLI 122
++ + + +E I
Sbjct: 166 VLRSEADVDEARKLANAAECI 186
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin,
phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Length = 334
Score = 28.8 bits (65), Expect = 3.4
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 305 AGLAMATMDIIKLHGGEPANFLDVGG--GATAAQVKEAFKIITA---D-PKVCAI---MV 355
+A +I +L +F+DVGG G + +A D + +
Sbjct: 151 KASNLAFHEIPRLLDFRGRSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNL 210
Query: 356 NIFGGIMRCDVIA 368
+ R ++
Sbjct: 211 SSLLAGERVSLVG 223
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 28.9 bits (65), Expect = 3.9
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 6/55 (10%)
Query: 305 AGLAMATMDIIKLHGGEPANFLDVGG--GATAAQVKEAF---KIITAD-PKVCAI 353
A A ++ + EP LD+ G V + +I D V +
Sbjct: 149 ANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEV 203
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET:
AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8
d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Length = 334
Score = 28.5 bits (63), Expect = 4.3
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 21/75 (28%)
Query: 44 LLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMV 103
LK+ GI VP + ++ +I K +++K GG+ G +
Sbjct: 107 WLKKAGIRVP-----EVYEDPDDIE-----KPVIVKPHGAKGGK-----------GYFLA 145
Query: 104 DTPEEAEEVAGKMIG 118
PE+ A K +G
Sbjct: 146 KDPEDFWRKAEKFLG 160
>1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus
stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB:
1giy_K 1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K
Length = 149
Score = 27.9 bits (63), Expect = 4.4
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 58 AKTKKEAGEIAKKLNIKDIVLKAQVLAGGR 87
A+ A ++ ++L + + A+ GGR
Sbjct: 59 AEELANAKKLKEQLEKLTVTIPAKAGEGGR 88
>1e4c_P L-fuculose 1-phosphate aldolase; aldolase (class II), bacterial
L-fucose metabolism; 1.66A {Escherichia coli} SCOP:
c.74.1.1 PDB: 1fua_A 2fua_A 3fua_A 4fua_A* 1dzv_P 1e4b_P
1e47_P* 1e48_P* 1dzz_P 1e46_P 1dzu_P 1dzy_P 1dzx_P
1dzw_P 1e49_P 1e4a_P
Length = 215
Score = 28.0 bits (63), Expect = 5.3
Identities = 15/112 (13%), Positives = 34/112 (30%), Gaps = 31/112 (27%)
Query: 47 EGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQ--VLAGGRGKGAFKGGLKGGVKMVD 104
IP P+ T++ + +A L + L ++A
Sbjct: 120 GNSIPCAPYATFGTRELSEHVALALKNRKATLLQHHGLIACEV----------------- 162
Query: 105 TPEEA-------EEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYY 149
E+A E +A ++ YL T + + + + + + +
Sbjct: 163 NLEKALWLAHEVEVLA-QL---YLTTLAITDPVPVLSDEEI-AVVLEKFKTF 209
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 108
Score = 26.7 bits (60), Expect = 5.7
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 14/68 (20%)
Query: 46 KEGGIPVPP--FGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMV 103
K+ + P GV K +EA IA+++ +++KA AGG GK G+++
Sbjct: 17 KKAEVNTIPGFDGVVKDAEEAVRIAREIGYP-VMIKAS--AGGGGK---------GMRIA 64
Query: 104 DTPEEAEE 111
EE +
Sbjct: 65 WDDEETRD 72
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 483
Score = 27.9 bits (62), Expect = 7.1
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 46 KEGGIP---VPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVL 83
+ G P +G+ T + + A+ L+ D+ + + L
Sbjct: 271 ETYGTPWFEGSFYGITDTSQALRDFARLLDDPDLTARTEAL 311
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine
synthesis, enzyme, protein-ATP complex, structural GE
structural genomics consortium, SGC; HET: ATP; 2.45A
{Homo sapiens}
Length = 452
Score = 27.9 bits (63), Expect = 8.6
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 11/76 (14%)
Query: 44 LLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMV 103
+ GIP + +EA + +V+KA LA G+ GV +
Sbjct: 135 FMDRHGIPTAQWKAFTKPEEACSFILSADFPALVVKASGLAAGK-----------GVIVA 183
Query: 104 DTPEEAEEVAGKMIGD 119
+ EEA + +++ +
Sbjct: 184 KSKEEACKAVQEIMQE 199
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A
{Staphylococcus aureus subsp} PDB: 3t07_A*
Length = 606
Score = 27.6 bits (62), Expect = 9.7
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 86 GRGKGAFKGGLKGGVKMVDTPEEAEEVAGKMIGDYLITKQT 126
G+G +G + G + +T ++ E ++T
Sbjct: 498 ANGQGIGRGSVVGTTLVAETVKDLEGKDLS--DKVIVTNSI 536
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli
structural genomics, PSI-2, protein structure
initiative; 1.85A {Escherichia coli}
Length = 293
Score = 27.5 bits (62), Expect = 9.9
Identities = 3/19 (15%), Positives = 8/19 (42%)
Query: 365 DVIAEGIIAAAQELSLKIP 383
+ +G++ K+P
Sbjct: 206 FALLQGVMDVTLRRDGKLP 224
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.375
Gapped
Lambda K H
0.267 0.0768 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,870,370
Number of extensions: 457761
Number of successful extensions: 1399
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1355
Number of HSP's successfully gapped: 98
Length of query: 443
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 346
Effective length of database: 3,993,456
Effective search space: 1381735776
Effective search space used: 1381735776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)