RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12143
         (443 letters)



>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain,
           C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 148

 Score =  174 bits (442), Expect = 1e-53
 Identities = 82/148 (55%), Positives = 112/148 (75%)

Query: 278 DAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQV 337
           +  E EAAK+ L YI LDG+I C VNGAGLAMAT DII L+GG+PANFLD+GGG   +QV
Sbjct: 1   EPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQV 60

Query: 338 KEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAK 397
            +AFK++TADPKV AI+VNIFGGI+ C +IA GI  A +EL LK+P++ RL+GTNV +A+
Sbjct: 61  YQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTNVHEAQ 120

Query: 398 VLIASAAMKILPCDNLDEAARLAVKLSS 425
            ++ ++ + I    +L++AA+ AV   +
Sbjct: 121 NILTNSGLPITSAVDLEDAAKKAVASVT 148


>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain,
           C-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 150

 Score =  174 bits (442), Expect = 1e-53
 Identities = 83/146 (56%), Positives = 110/146 (75%)

Query: 278 DAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGATAAQV 337
           D +E +AA+  LNY+ALDG+IGC+VNGAGLAM TMDI+KLHGGEPANFLDVGGGAT  +V
Sbjct: 1   DPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERV 60

Query: 338 KEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGTNVDDAK 397
            EAFKII +D KV A++VNIFGGI+RCD+IA+GII A  E+ + +P++ RL+G N +   
Sbjct: 61  TEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGA 120

Query: 398 VLIASAAMKILPCDNLDEAARLAVKL 423
             +A + + I+    L +AA+  V  
Sbjct: 121 KKLADSGLNIIAAKGLTDAAQQVVAA 146


>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain,
           N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 238

 Score =  176 bits (446), Expect = 3e-53
 Identities = 87/245 (35%), Positives = 128/245 (52%), Gaps = 8/245 (3%)

Query: 34  LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFK 93
           +N+HE+ +  L    G+P P      T +EA E A K+     V+K QV AGGRGK    
Sbjct: 1   MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKA--- 57

Query: 94  GGLKGGVKMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFM 153
               GGVK+V++ E+    A   +G  L+T QT   G+  N ++V       KE Y   +
Sbjct: 58  ----GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAV 113

Query: 154 MERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQALKVADAVGLKAKR 213
           ++RS    V +AS++GGV IE+VA E P  I    +D   G    Q  ++A  +GL+ K 
Sbjct: 114 VDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGKL 173

Query: 214 DI-TAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDLR 272
                ++ + +  +F+ +D +LIEINP      G+   LD K+  D NA FRQ  L ++R
Sbjct: 174 VQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLREMR 233

Query: 273 DWSQE 277
           D SQE
Sbjct: 234 DQSQE 238


>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain,
           N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 246

 Score =  170 bits (432), Expect = 5e-51
 Identities = 117/244 (47%), Positives = 155/244 (63%), Gaps = 1/244 (0%)

Query: 34  LNVHEHVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFK 93
           +N+ E+ S  L+ + G+ V  F VA T  EA E AK+LN K+IVLKAQ+LAGGRGKG F 
Sbjct: 2   VNLQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFS 61

Query: 94  GGLKGGVKMVDTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFM 153
            GLKGGV +   PE   ++A +MIG  L TKQT ++G   N VMV E     +E Y A +
Sbjct: 62  SGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAIL 121

Query: 154 MERSFAGPVLIASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQALKVADAVGLKAKR 213
           M+RS  GPVL+ S QGGV+IEEVAA NP  I  E +DI  GI   QA ++A+ +G     
Sbjct: 122 MDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPL 181

Query: 214 -DITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAEFRQKALFDLR 272
            +  A+ + K+Y LF+  DA+ +E+NP+ E   G     DAK+ FDDNAEFRQK +F + 
Sbjct: 182 QNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMD 241

Query: 273 DWSQ 276
           D S+
Sbjct: 242 DKSE 245


>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase  alpha chain, AcdA,
           domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 163

 Score = 72.8 bits (178), Expect = 7e-16
 Identities = 30/151 (19%), Positives = 53/151 (35%), Gaps = 27/151 (17%)

Query: 298 IGCLVNGAGLAMATMDIIKLHGGEPA---------------------NFLDVGGGATAAQ 336
           +  + N  G  + T D +   G + A                     N +D+   A    
Sbjct: 6   VAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGED 65

Query: 337 VKEAFKIITADPKVCAIMVNIF---GGIMRCDVIAEGIIAAAQELSLKIPII-CRLQGTN 392
                K++  DP V  ++          M     AEGII A +E++ + P++   + G  
Sbjct: 66  YYRTAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYV 125

Query: 393 VDDAKVLIASAAMKILPCDNLDEAARLAVKL 423
            + AK L+      I   +  ++ A  A  L
Sbjct: 126 SEKAKELLEKN--GIPTYERPEDVASAAYAL 154


>d1a9xa5 d.142.1.2 (A:128-402) Carbamoyl phosphate synthetase (CPS),
           large subunit ATP-binding domains {Escherichia coli
           [TaxId: 562]}
          Length = 275

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 32/214 (14%), Positives = 69/214 (32%), Gaps = 43/214 (20%)

Query: 44  LLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMV 103
            +K+ G+     G+A T +EA  +A  +     +++     GG G G             
Sbjct: 8   AMKKIGLETARSGIAHTMEEALAVAADVGFP-CIIRPSFTMGGSGGGI--------AYNR 58

Query: 104 DTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVL 163
           +  EE       +                    ++ +      + Y   ++       ++
Sbjct: 59  EEFEEICARGLDLSPTK---------------ELLIDESLIGWKEYEMEVVRDKNDNCII 103

Query: 164 IASSQ----GGVNIEEVAAENPSAILYEPVDITVGITKEQALKVADAVGLKAKRDITAEM 219
           + S +     G++  +     P+  L    D    I +  ++ V   +G++     T   
Sbjct: 104 VCSIENFDAMGIHTGDSITVAPAQTLT---DKEYQIMRNASMAVLREIGVE-----TGGS 155

Query: 220 LIKMYALFISKDASLIEINPY-------AEDATG 246
            ++      +    +IE+NP        A  ATG
Sbjct: 156 NVQFAVNPKNGRLIVIEMNPRVSRSSALASKATG 189


>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase
          (CPS), large subunit ATP-binding domains {Escherichia
          coli [TaxId: 562]}
          Length = 259

 Score = 39.2 bits (91), Expect = 5e-04
 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 44 LLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRG 88
           ++   +  P        + A E AK++    +V++A  + GGR 
Sbjct: 5  AVERLKLKQPANATVTAIEMAVEKAKEIGYP-LVVRASYVLGGRA 48


>d1kjqa3 d.142.1.2 (A:113-318) Glycinamide ribonucleotide
           transformylase PurT, domain 2 {Escherichia coli [TaxId:
           562]}
          Length = 206

 Score = 38.5 bits (88), Expect = 7e-04
 Identities = 7/67 (10%), Positives = 17/67 (25%), Gaps = 12/67 (17%)

Query: 45  LKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMVD 104
            +E  +P   +  A ++    E    +    I                      G   + 
Sbjct: 10  AEELQLPTSTYRFADSESLFREAVADIGYPCI------------VKPVMSSSGKGQTFIR 57

Query: 105 TPEEAEE 111
           + E+  +
Sbjct: 58  SAEQLAQ 64


>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX
          ATP-binding domain {Thermus thermophilus [TaxId: 274]}
          Length = 192

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 41 SYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKA 80
          +   L + G+P P   +A  ++EA  + +      +VLK 
Sbjct: 4  TSVALAKAGLPQPKTALATDREEALRLMEAFG-YPVVLKP 42


>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole
          ribonucleotide synthetase PurK (AIRC), domain 2
          {Escherichia coli [TaxId: 562]}
          Length = 198

 Score = 33.9 bits (76), Expect = 0.022
 Identities = 5/29 (17%), Positives = 12/29 (41%)

Query: 44 LLKEGGIPVPPFGVAKTKKEAGEIAKKLN 72
          L  +  +P  P+ +   + E   +  +L 
Sbjct: 8  LFDKLHLPTAPWQLLAERSEWPAVFDRLG 36


>d2r7ka2 d.142.1.9 (A:124-361) 5-formaminoimidazole-4-carboxamide
           ribonucleotide synthetase PurP {Methanocaldococcus
           jannaschii [TaxId: 2190]}
          Length = 238

 Score = 33.6 bits (76), Expect = 0.032
 Identities = 27/209 (12%), Positives = 58/209 (27%), Gaps = 39/209 (18%)

Query: 44  LLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMV 103
           LL+E G+ VP         +  E  + ++   +++K     GGR           G  + 
Sbjct: 8   LLREAGLRVP---------KKYESPEDID-GTVIVKFPGARGGR-----------GYFIA 46

Query: 104 DTPEEAEE---------VAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMM 154
            + EE  +         +           ++       C     +  K   +        
Sbjct: 47  SSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVVGTNFCIHYFYSPLKDEVELLGMDKRY 106

Query: 155 ERSFAGPVLIASSQ---GGVNIEEVAAENPSAIL-YEPVDITVGITKEQALKVADAVGLK 210
           E +  G V I +       +N   V   N   ++    +     +  +   K  + V   
Sbjct: 107 ESNIDGLVRIPAKDQLEMNINPSYVITGNIPVVIRESLLPQVFEMGDKLVAKAKELVPPG 166

Query: 211 AKRDITAEMLIKMYALFISKDASLIEINP 239
                  + L       +     + E++ 
Sbjct: 167 MIGPFCLQSLCNENLELV-----VFEMSA 190


>d1gsoa3 d.142.1.2 (A:104-327) Glycinamide ribonucleotide synthetase
           (GAR-syn), domain 2 {Escherichia coli [TaxId: 562]}
          Length = 224

 Score = 33.3 bits (75), Expect = 0.039
 Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 12/77 (15%)

Query: 44  LLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMV 103
            L    IP   +      + A    ++     IV+KA  LA G+           GV + 
Sbjct: 8   FLARHKIPTAEYQNFTEVEPALAYLREKG-APIVIKADGLAAGK-----------GVIVA 55

Query: 104 DTPEEAEEVAGKMIGDY 120
            T EEAE     M+   
Sbjct: 56  MTLEEAEAAVHDMLAGN 72


>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA,
          C-domain {Enterococcus faecium [TaxId: 1352]}
          Length = 211

 Score = 31.3 bits (69), Expect = 0.15
 Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 3/42 (7%)

Query: 39 HVSYTLLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKA 80
           ++Y + K  GI  P F V         +A       + +K 
Sbjct: 3  SLTYIVAKNAGIATPAFWVINKDDRP--VAATFTYP-VFVKP 41


>d1h4xa_ c.13.2.1 (A:) Anti-sigma factor antagonist SpoIIaa
           {Bacillus sphaericus [TaxId: 1421]}
          Length = 111

 Score = 29.5 bits (66), Expect = 0.26
 Identities = 13/85 (15%), Positives = 23/85 (27%), Gaps = 1/85 (1%)

Query: 332 ATAAQVKEAFKIITADPKVCAIMVNIFGGIMRCDVIAEGIIAAAQELSLKIPIICRLQGT 391
               Q++           V  I+ N F  +   D    G++         +     L   
Sbjct: 23  HAVEQIRAKISTAIFQGAVTTIIWN-FERLSFMDSSGVGLVLGRMRELEAVAGRTILLNP 81

Query: 392 NVDDAKVLIASAAMKILPCDNLDEA 416
           +    KV   S     +     +EA
Sbjct: 82  SPTMRKVFQFSGLGPWMMDATEEEA 106


>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA,
          C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId:
          1245]}
          Length = 228

 Score = 28.9 bits (63), Expect = 1.2
 Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 5/53 (9%)

Query: 39 HVSYTLLKEGGIPVPPFGV----AKTKKEAGEIAKKLNIKDIVLKAQVLAGGR 87
           ++  LL   GI    + V    +       +I  +L    + +KA       
Sbjct: 3  ALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELG-NIVFVKAANQGSSV 54


>d2r85a2 d.142.1.9 (A:100-334) 5-formaminoimidazole-4-carboxamide
           ribonucleotide synthetase PurP {Pyrococcus furiosus
           [TaxId: 2261]}
          Length = 235

 Score = 28.7 bits (63), Expect = 1.4
 Identities = 25/198 (12%), Positives = 53/198 (26%), Gaps = 20/198 (10%)

Query: 44  LLKEGGIPVPPFGVAKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGAFKGGLKGGVKMV 103
            LK+ GI VP         E  E    +  K +++K     GG+G            K  
Sbjct: 8   WLKKAGIRVP---------EVYEDPDDIE-KPVIVKPHGAKGGKGYFL--------AKDP 49

Query: 104 DTPEEAEEVAGKMIGDYLITKQTGEKGRICNAVMVTERKYPRKEYYFAFMMERSFAGPVL 163
           +      E    +     +     ++  +   V         +E      ++R +   V 
Sbjct: 50  EDFWRKAEKFLGIKRKEDLKNIQIQEYVLGVPVYPHYFYSKVREELELMSIDRRYESNVD 109

Query: 164 IASSQGGVNIEEVAAENPSAILYEPVDITVGITKEQALKVADAVGLKAKRDITAEMLIKM 223
                   +  E   +    ++     +         ++  + V   A+  +        
Sbjct: 110 AIGRIPAKDQLEFDMDITYTVIGNIPIVLRESLLMDVIEAGERVVKAAEELMGGLWGPFC 169

Query: 224 YALFISKDASL--IEINP 239
                + D      EI+ 
Sbjct: 170 LEGVFTPDLEFVVFEISA 187


>d1diva1 d.99.1.1 (A:56-149) Ribosomal protein L9 C-domain
          {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 94

 Score = 26.3 bits (58), Expect = 2.5
 Identities = 8/34 (23%), Positives = 17/34 (50%)

Query: 58 AKTKKEAGEIAKKLNIKDIVLKAQVLAGGRGKGA 91
          A+    A ++ ++L    + + A+   GGR  G+
Sbjct: 4  AEELANAKKLKEQLEKLTVTIPAKAGEGGRLFGS 37


>d1aoza2 b.6.1.3 (A:130-338) Ascorbate oxidase {Zucchini (Cucurbita
           pepo var. medullosa) [TaxId: 3663]}
          Length = 209

 Score = 27.5 bits (60), Expect = 2.5
 Identities = 12/64 (18%), Positives = 18/64 (28%)

Query: 271 LRDWSQEDAKEVEAAKHSLNYIALDGSIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGG 330
           L DW  +   + E    S     +      L+NG G    ++        EP        
Sbjct: 12  LSDWWHQSIHKQEVGLSSKPIRWIGEPQTILLNGRGQFDCSIAAKYDSNLEPCKLKGSES 71

Query: 331 GATA 334
            A  
Sbjct: 72  CAPY 75


>d2j01i1 d.99.1.1 (I:56-146) Ribosomal protein L9 C-domain
          {Thermus thermophilus [TaxId: 274]}
          Length = 91

 Score = 25.9 bits (57), Expect = 3.8
 Identities = 5/25 (20%), Positives = 11/25 (44%)

Query: 58 AKTKKEAGEIAKKLNIKDIVLKAQV 82
          A+ K EA  + + L    + +  + 
Sbjct: 4  AERKAEAERLKEILENLTLTIPVRA 28


>d1tueb_ b.91.1.1 (B:) E2 regulatory, transactivation domain
          {Human papillomavirus type 18 [TaxId: 333761]}
          Length = 194

 Score = 26.9 bits (60), Expect = 4.2
 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 7/38 (18%)

Query: 37 HEHVSYTLLKEGGI------PVPPFGVAKTK-KEAGEI 67
           E+  +   +E GI       VP + ++K+K  +A E+
Sbjct: 43 WENAIFFAAREHGIQTLNHQVVPAYNISKSKAHKAIEL 80


>d2nnua1 b.91.1.1 (A:1-200) E2 regulatory, transactivation domain
          {Human papillomavirus type 16 [TaxId: 333760]}
          Length = 200

 Score = 26.9 bits (60), Expect = 4.3
 Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 7/38 (18%)

Query: 37 HEHVSYTLLKEGGI------PVPPFGVAKTK-KEAGEI 67
           E   Y   +E G        VP   V+K K  +A E+
Sbjct: 38 LECAIYYKAREMGFKHINHQVVPTLAVSKNKALQAIEL 75


>d1r6na_ b.91.1.1 (A:) E2 regulatory, transactivation domain
          {Human papillomavirus type 11 [TaxId: 10580]}
          Length = 196

 Score = 26.9 bits (60), Expect = 4.4
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 7/38 (18%)

Query: 37 HEHVSYTLLKEGGI------PVPPFGVAKTK-KEAGEI 67
           E V     K+ G+       VPP  V++TK   A E+
Sbjct: 38 LESVLLHKAKQMGLSHIGLQVVPPLTVSETKGHNAIEM 75


>d1r0va3 d.75.1.1 (A:140-214) Dimeric tRNA splicing endonuclease,
           domains 1 and 3 {Archaeon Archaeoglobus fulgidus [TaxId:
           2234]}
          Length = 75

 Score = 25.4 bits (55), Expect = 4.6
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 107 EEAEEVAGKMIGDYLITKQT 126
           EE  E+AG +  +Y+ITKQT
Sbjct: 5   EELPEIAGVLSDEYVITKQT 24


>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium
           falciparum [TaxId: 5833]}
          Length = 89

 Score = 24.8 bits (54), Expect = 9.9
 Identities = 11/92 (11%), Positives = 31/92 (33%), Gaps = 22/92 (23%)

Query: 203 VADAVGLKAKRDITAEMLIKMYALFISKDASLIEINPYAEDATGNFFGLDAKMRFDDNAE 262
           V+   GL    ++  E+ + +Y  +              + +T     +           
Sbjct: 10  VSFINGLPRTINLPNELKLDLYKYY--------------KQSTIGNCNIKEPSAHKYIDR 55

Query: 263 FRQKALFDLRDWSQEDAKEVEAAKHSLNYIAL 294
            + +A   + + ++EDA++         Y+ +
Sbjct: 56  KKYEAWKSVENLNREDAQK--------RYVDI 79


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0394    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,581,827
Number of extensions: 74464
Number of successful extensions: 271
Number of sequences better than 10.0: 1
Number of HSP's gapped: 265
Number of HSP's successfully gapped: 34
Length of query: 443
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 355
Effective length of database: 1,199,356
Effective search space: 425771380
Effective search space used: 425771380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.5 bits)