BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12148
(116 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q969W1|ZDH16_HUMAN Probable palmitoyltransferase ZDHHC16 OS=Homo sapiens GN=ZDHHC16
PE=2 SV=1
Length = 377
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 37 CVLIVVGNWILLNYVFHYYMGVTTMPGYPPQG 68
C +W L+ VFHYY +TT PGYPPQG
Sbjct: 116 CWHFFYSHWNLILIVFHYYQAITTPPGYPPQG 147
>sp|Q4R7E2|ZDH16_MACFA Probable palmitoyltransferase ZDHHC16 OS=Macaca fascicularis
GN=ZDHHC16 PE=2 SV=1
Length = 377
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 37 CVLIVVGNWILLNYVFHYYMGVTTMPGYPPQG 68
C +W L+ VFHYY +TT PGYPPQG
Sbjct: 116 CWHFFYSHWNLILIVFHYYQAITTPPGYPPQG 147
>sp|Q58CU4|ZDH16_BOVIN Probable palmitoyltransferase ZDHHC16 OS=Bos taurus GN=ZDHHC16 PE=2
SV=1
Length = 377
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 37 CVLIVVGNWILLNYVFHYYMGVTTMPGYPPQG 68
C +W L+ VFHYY +TT PGYPPQG
Sbjct: 116 CWHFFYSHWNLILIVFHYYQAITTPPGYPPQG 147
>sp|Q9ESG8|ZDH16_MOUSE Probable palmitoyltransferase ZDHHC16 OS=Mus musculus GN=Zdhhc16
PE=1 SV=2
Length = 361
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 37 CVLIVVGNWILLNYVFHYYMGVTTMPGYPPQG 68
C +W L+ VFHYY +TT PGYPPQG
Sbjct: 116 CWHFFYSHWNLILIVFHYYQAITTPPGYPPQG 147
>sp|Q9LJX4|PUM5_ARATH Pumilio homolog 5 OS=Arabidopsis thaliana GN=APUM5 PE=1 SV=2
Length = 961
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 9/38 (23%)
Query: 63 GYPPQGGLIP---------EAMVPVAYFLNTTTTTYNS 91
GYPP G++P EA VP+ Y +++T++ YN+
Sbjct: 416 GYPPASGIVPQYMSGYPSHEATVPMPYDISSTSSGYNN 453
>sp|A5DAK5|CTU2_PICGU Cytoplasmic tRNA 2-thiolation protein 2 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=NCS2 PE=3 SV=2
Length = 420
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 17/32 (53%)
Query: 80 YFLNTTTTTYNSALECRVSTAAKHAAPTPSTK 111
YF T Y+S V TAAK AAPT TK
Sbjct: 301 YFRQLDATGYSSTASTVVRTAAKLAAPTVGTK 332
>sp|A5WGF2|RIMO_PSYWF Ribosomal protein S12 methylthiotransferase RimO OS=Psychrobacter
sp. (strain PRwf-1) GN=rimO PE=3 SV=1
Length = 524
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 20 SYWIGVPFYWHKSPALTCVLIVVGNWILLNYVFHY-----YMGVTTMPGYPPQGGLIPEA 74
S+W G+P K + L VG W+ L+YV+ Y + + PG +GGL+P
Sbjct: 274 SFWDGMPLK-SKFFDMCQALAKVGIWVRLHYVYPYPHVDKVVELMAKPG--DRGGLLPYL 330
Query: 75 MVPVAY 80
+P+ +
Sbjct: 331 DIPLQH 336
>sp|Q9Z1Y4|TRIP6_MOUSE Thyroid receptor-interacting protein 6 OS=Mus musculus GN=Trip6
PE=1 SV=1
Length = 480
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 66 PQGGLIPEAMVPVAYFLNTTTTTYNSALECRVSTAAKHAAPTPSTKLKPMR 116
P GG +P M+P +++ T +Y +A ST A A P +P+R
Sbjct: 138 PSGGAVPTPMLPASHYGGPTPASYATA-----STPAGPAFPVQVKVAQPVR 183
>sp|Q83FV7|FTSH_TROWT ATP-dependent zinc metalloprotease FtsH OS=Tropheryma whipplei
(strain Twist) GN=ftsH PE=3 SV=1
Length = 666
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 31 KSPALTCVLIVVGNWILLN-YVFHYYMGVTTMPG 63
KSP L VL+VVG W+ +N ++ + Y + T G
Sbjct: 6 KSPVLYIVLLVVGVWVAVNLFLTNAYQSIRTEEG 39
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.137 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,606,678
Number of Sequences: 539616
Number of extensions: 1841072
Number of successful extensions: 4793
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 4776
Number of HSP's gapped (non-prelim): 38
length of query: 116
length of database: 191,569,459
effective HSP length: 84
effective length of query: 32
effective length of database: 146,241,715
effective search space: 4679734880
effective search space used: 4679734880
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)