Query psy12148
Match_columns 116
No_of_seqs 118 out of 474
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 19:57:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ans_A Neurotoxin III; NMR {An 48.9 5.2 0.00018 19.9 0.6 8 78-85 10-17 (27)
2 1ews_A RK-1 defensin, alpha-de 32.6 14 0.00048 18.8 0.7 12 85-96 18-29 (32)
3 3j20_R 30S ribosomal protein S 22.5 50 0.0017 21.9 2.2 12 73-84 15-26 (113)
4 3arc_I Photosystem II reaction 20.4 1.1E+02 0.0039 16.3 4.7 15 55-69 21-35 (38)
5 3arc_T Photosystem II reaction 16.0 1.4E+02 0.0047 15.4 4.1 14 54-67 18-31 (32)
6 3iz6_P 40S ribosomal protein S 15.9 25 0.00087 24.8 -0.5 15 70-84 50-64 (161)
7 2zkq_q 40S ribosomal protein S 15.5 33 0.0011 24.1 0.0 15 70-84 51-65 (158)
8 1ymm_C MBP peptide, HLA class 14.8 1.2E+02 0.0041 14.8 2.0 19 52-70 5-23 (26)
9 2xzm_Q Ribosomal protein S17 c 13.5 31 0.001 24.3 -0.6 12 73-84 51-62 (157)
10 3u5c_L RP41, S18, YS12, 40S ri 13.1 29 0.001 24.3 -0.8 11 74-84 53-63 (156)
No 1
>1ans_A Neurotoxin III; NMR {Anemonia sulcata} SCOP: g.11.1.1
Probab=48.93 E-value=5.2 Score=19.91 Aligned_cols=8 Identities=0% Similarity=-0.247 Sum_probs=6.5
Q ss_pred cccccCCc
Q psy12148 78 VAYFLNTT 85 (116)
Q Consensus 78 HCpWinNC 85 (116)
-|||..||
T Consensus 10 gCpWGQ~~ 17 (27)
T 1ans_A 10 GCPWGQNC 17 (27)
T ss_dssp TCSSSCSS
T ss_pred CCcccccc
Confidence 58898887
No 2
>1ews_A RK-1 defensin, alpha-defisin; alpha defensin, triple-stranded beta-sheet, antimicrobial protein; NMR {Oryctolagus cuniculus} SCOP: g.9.1.1
Probab=32.62 E-value=14 Score=18.78 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=9.9
Q ss_pred ccccCCceeeeh
Q psy12148 85 TTTTYNSALECR 96 (116)
Q Consensus 85 CVG~~N~ryf~~ 96 (116)
=.|.+|.||-|+
T Consensus 18 scglfnskyicc 29 (32)
T 1ews_A 18 SCGLFNSKYICC 29 (32)
T ss_dssp CCSSSSCSEEEE
T ss_pred ccccccceeEEe
Confidence 349999999886
No 3
>3j20_R 30S ribosomal protein S17P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.53 E-value=50 Score=21.86 Aligned_cols=12 Identities=8% Similarity=0.050 Sum_probs=9.9
Q ss_pred CCCcccccccCC
Q psy12148 73 EAMVPVAYFLNT 84 (116)
Q Consensus 73 ~~~~HHCpWinN 84 (116)
+..|-.|||.+|
T Consensus 15 ~~~d~~cPf~G~ 26 (113)
T 3j20_R 15 KCDDPKCPWHGN 26 (113)
T ss_dssp CCCCSSSTTSSS
T ss_pred cccCCCCCCcce
Confidence 355899999987
No 4
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=20.36 E-value=1.1e+02 Score=16.32 Aligned_cols=15 Identities=13% Similarity=0.180 Sum_probs=10.9
Q ss_pred HHHhhcCCCCCCCCC
Q psy12148 55 YMGVTTMPGYPPQGG 69 (116)
Q Consensus 55 ~~ai~tdPG~vP~~~ 69 (116)
+.-.-.|||+.|..-
T Consensus 21 FGfLsnDP~RNP~rk 35 (38)
T 3arc_I 21 FGFLSGDPARNPKRK 35 (38)
T ss_dssp HHHHTTGGGCSSSCC
T ss_pred ccccCCCCCCCCCcc
Confidence 444568999998764
No 5
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=16.03 E-value=1.4e+02 Score=15.41 Aligned_cols=14 Identities=7% Similarity=0.095 Sum_probs=8.3
Q ss_pred HHHHhhcCCCCCCC
Q psy12148 54 YYMGVTTMPGYPPQ 67 (116)
Q Consensus 54 Y~~ai~tdPG~vP~ 67 (116)
++...+.||=+.++
T Consensus 18 FFAI~FRePPri~~ 31 (32)
T 3arc_T 18 FFAIFFREPPRITK 31 (32)
T ss_dssp HHHHHTSCCCCCC-
T ss_pred HHhhhhcCCCCCCC
Confidence 34445888877654
No 6
>3iz6_P 40S ribosomal protein S11 (S17P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=15.90 E-value=25 Score=24.79 Aligned_cols=15 Identities=13% Similarity=-0.009 Sum_probs=11.1
Q ss_pred CCCCCCcccccccCC
Q psy12148 70 LIPEAMVPVAYFLNT 84 (116)
Q Consensus 70 ~~~~~~~HHCpWinN 84 (116)
.+....|-.|||.+|
T Consensus 50 ~~g~y~D~kCPf~G~ 64 (161)
T 3iz6_P 50 IEGTYIDKKCPFTGT 64 (161)
T ss_dssp CCCCSSSSCCSEEEE
T ss_pred hcCcccccCCCccce
Confidence 334456899999987
No 7
>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_Q* 1s1h_Q
Probab=15.49 E-value=33 Score=24.13 Aligned_cols=15 Identities=7% Similarity=-0.053 Sum_probs=0.0
Q ss_pred CCCCCCcccccccCC
Q psy12148 70 LIPEAMVPVAYFLNT 84 (116)
Q Consensus 70 ~~~~~~~HHCpWinN 84 (116)
.+.+..|-.|||.+|
T Consensus 51 ~~~~~~D~kCPf~G~ 65 (158)
T 2zkq_q 51 IEGTYIDKKCPFTGN 65 (158)
T ss_dssp ---------------
T ss_pred hcccccCCCCCCccc
Confidence 344556899999987
No 8
>1ymm_C MBP peptide, HLA class II histocompatibility antigen, DR beta; protein-protein complex, T cell repertoire, auto-immunity, I system; HET: NAG; 3.50A {Homo sapiens}
Probab=14.78 E-value=1.2e+02 Score=14.84 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=14.3
Q ss_pred HHHHHHhhcCCCCCCCCCC
Q psy12148 52 FHYYMGVTTMPGYPPQGGL 70 (116)
Q Consensus 52 ~nY~~ai~tdPG~vP~~~~ 70 (116)
-++||-+.++++.++++..
T Consensus 5 VHFFKNivspr~pp~~q~~ 23 (26)
T 1ymm_C 5 VHFFKNIVTPRGGSGGGGG 23 (26)
T ss_pred hhhhhhccCCCCCCCCcCC
Confidence 3788999888888776543
No 9
>2xzm_Q Ribosomal protein S17 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Q
Probab=13.46 E-value=31 Score=24.27 Aligned_cols=12 Identities=8% Similarity=-0.036 Sum_probs=9.7
Q ss_pred CCCcccccccCC
Q psy12148 73 EAMVPVAYFLNT 84 (116)
Q Consensus 73 ~~~~HHCpWinN 84 (116)
+..|-.|||.+|
T Consensus 51 ~~~D~kCPf~G~ 62 (157)
T 2xzm_Q 51 TYVDKKCPFTSN 62 (157)
T ss_dssp CCCCTTCSSSSS
T ss_pred cccCCCCCCccc
Confidence 445899999987
No 10
>3u5c_L RP41, S18, YS12, 40S ribosomal protein S11-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_P 3o30_F 3o2z_F 3u5g_L 3jyv_Q* 1s1h_Q
Probab=13.10 E-value=29 Score=24.35 Aligned_cols=11 Identities=9% Similarity=-0.079 Sum_probs=9.0
Q ss_pred CCcccccccCC
Q psy12148 74 AMVPVAYFLNT 84 (116)
Q Consensus 74 ~~~HHCpWinN 84 (116)
..|-.|||.+|
T Consensus 53 y~D~kCPf~G~ 63 (156)
T 3u5c_L 53 YIDKKCPFTGL 63 (156)
T ss_dssp CCCTTCTTTSS
T ss_pred eccccCCcccc
Confidence 34789999987
Done!