RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12148
(116 letters)
>gnl|CDD|115046 pfam06364, DUF1068, Protein of unknown function (DUF1068). This
family consists of several hypothetical plant proteins
from Arabidopsis thaliana and Oryza sativa. The
function of this family is unknown.
Length = 176
Score = 29.6 bits (66), Expect = 0.25
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 2 SPAFVVLVVTLTSFVVFLSYWIGVPFYWHKSPALTCV 38
A + + L + Y +G P YWH + AL V
Sbjct: 4 HTAALKAGLALLGLSM-AGYILGPPLYWHLTEALARV 39
>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase
conserved domain.
Length = 373
Score = 29.3 bits (66), Expect = 0.41
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Query: 1 MSPAFVVLVVTLTSFVVFLSYWIG-----VPFYWHKSPALTCVLIVVGNWI 46
SP F S+ L + F W SPA T + VV +W+
Sbjct: 38 HSPNFHAYFPAGNSYPSLLGDMLSDAINCNGFTWESSPACTELENVVMDWL 88
>gnl|CDD|225710 COG3169, COG3169, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 116
Score = 28.2 bits (63), Expect = 0.50
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 9 VVTLTSFVVFLSYWIGVPFYWHKSPALTCVLIVV 42
V+TL FV F +++ P W+ A +L V
Sbjct: 77 VITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAV 110
>gnl|CDD|235219 PRK04098, PRK04098, sec-independent translocase; Provisional.
Length = 158
Score = 28.2 bits (63), Expect = 0.85
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 72 PEAMVPVAYFLNTTTTTYNSA 92
P+AMV +A F T N A
Sbjct: 26 PQAMVDIAKFFKAVKKTINDA 46
>gnl|CDD|149089 pfam07830, PP2C_C, Protein serine/threonine phosphatase 2C,
C-terminal domain. Protein phosphatase 2C (PP2C) is
involved in regulating cellular responses to stress in
various eukaryotes. It consists of two domains: an
N-terminal catalytic domain and a C-terminal domain
characteristic of mammalian PP2Cs. This domain consists
of three antiparallel alpha helices, one of which packs
against two corresponding alpha-helices of the
N-terminal domain. The C-terminal domain does not seem
to play a role in catalysis, but it may provide protein
substrate specificity due to the cleft that is created
between it and the catalytic domain.
Length = 81
Score = 25.7 bits (57), Expect = 3.0
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 48 LNYVFHYYMGVTTMPGYPPQGGL 70
L +V + +PG PP GGL
Sbjct: 47 LLHVMKT-LASEDIPGLPPGGGL 68
>gnl|CDD|224649 COG1735, Php, Predicted metal-dependent hydrolase with the
TIM-barrel fold [General function prediction only].
Length = 316
Score = 26.5 bits (59), Expect = 3.2
Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 18/75 (24%)
Query: 17 VFLSY-WIGVPFYWHKSPALTC------------VLIVVGNWILLNYVFHYYMGVTTMPG 63
FL + IG Y+ + +L+ + L + VF M
Sbjct: 218 AFLEFDRIGKDKYYPDEDRIAPLLELVARGYADLILLSHDDICLSDDVFLKSML----KA 273
Query: 64 YPPQG-GLIPEAMVP 77
G G I +P
Sbjct: 274 NGGWGYGYILNDFIP 288
>gnl|CDD|219026 pfam06432, GPI2, Phosphatidylinositol
N-acetylglucosaminyltransferase.
Glycosylphosphatidylinositol (GPI) represents an
important anchoring molecule for cell surface proteins.
The first step in its synthesis is the transfer of
N-acetylglucosamine (GlcNAc) from
UDP-N-acetylglucosamine to phosphatidylinositol (PI).
This step involves products of three or four genes in
both yeast (GPI1, GPI2 and GPI3) and mammals (GPI1, PIG
A, PIG H and PIG C), respectively.
Length = 268
Score = 26.4 bits (59), Expect = 3.6
Identities = 10/47 (21%), Positives = 17/47 (36%)
Query: 1 MSPAFVVLVVTLTSFVVFLSYWIGVPFYWHKSPALTCVLIVVGNWIL 47
S V L + L +V++ G S + +LI +L
Sbjct: 70 ESLLLVSLGLLLLGYVLWDLVDGGGSLLHRLSDLKSALLITFFLLLL 116
>gnl|CDD|218667 pfam05634, APO_RNA-bind, APO RNA-binding. This domain contains
conserved cysteine and histidine residues. It resembles
zinc fingers, and binds to zinc. This domain functions
as an RNA-binding domain.
Length = 207
Score = 26.3 bits (58), Expect = 3.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 62 PGYPPQGGLIPEAMVPVAY 80
YPP+ GL+ + +VPVA
Sbjct: 61 VLYPPKNGLLVKELVPVAE 79
>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase.
Length = 539
Score = 26.2 bits (57), Expect = 4.3
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 2 SPAFVVLVVTLTSFVVFLSYWIG-----VPFYWHKSPALTCVLIVVGNWI 46
SP++ + TS FL + V F W SPA T + I+V +W+
Sbjct: 130 SPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPAATELEIIVLDWL 179
>gnl|CDD|234881 PRK00972, PRK00972, tetrahydromethanopterin S-methyltransferase
subunit E; Provisional.
Length = 292
Score = 26.1 bits (58), Expect = 4.8
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 16 VVFLSYWIGVPF--YWHKSPALTCVLIVVGNWILLNYV 51
+VFL W + F A+ LI+V I++N
Sbjct: 242 IVFLDGWRTIVFNIVGGGWGAIIVGLIIVLILIIINRK 279
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like
subgroup. Members of this group may play a role in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 345
Score = 26.2 bits (58), Expect = 4.8
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 12/38 (31%)
Query: 44 NWILLNYVFHYYMGVT------TMPGYPPQGGLIPEAM 75
N +L Y GVT TM G P GG++P ++
Sbjct: 89 NSLLFTY------GVTNSGKTYTMQGSPGDGGILPRSL 120
>gnl|CDD|224249 COG1330, RecC, Exonuclease V gamma subunit [DNA replication,
recombination, and repair].
Length = 1078
Score = 25.8 bits (57), Expect = 7.0
Identities = 13/48 (27%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 46 ILLNYVFH--YYMGVTTMPGYPPQGGLIPEAMVPVAYFLNTTTTTYNS 91
+LL Y +P Y GGL E +A+FL + Y
Sbjct: 498 MLLGYAMDEDAGEWQGVLP-YDEVGGLRAELAGKLAHFLERLSAWYRG 544
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.137 0.448
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,938,815
Number of extensions: 510150
Number of successful extensions: 792
Number of sequences better than 10.0: 1
Number of HSP's gapped: 791
Number of HSP's successfully gapped: 70
Length of query: 116
Length of database: 10,937,602
Length adjustment: 79
Effective length of query: 37
Effective length of database: 7,433,636
Effective search space: 275044532
Effective search space used: 275044532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.2 bits)