RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12148
         (116 letters)



>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
           complex, stranded beta-sheet core with solvent exposed
           alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
          Length = 349

 Score = 26.8 bits (60), Expect = 2.0
 Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 8/31 (25%)

Query: 51  VFHYYMGVT------TMPGYPPQGGLIPEAM 75
           +F Y  G T      TM G     G+IP A+
Sbjct: 81  IFAY--GQTASGKTYTMMGSEDHLGVIPRAI 109


>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
           ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
           crassa}
          Length = 443

 Score = 26.2 bits (58), Expect = 3.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)

Query: 60  TMPGYPPQGGLIPEAM 75
           TM G P Q GLIP   
Sbjct: 153 TMMGTPDQPGLIPRTC 168


>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
           microtubule binding, ATP- cell projection, cytoskeleton,
           glycoprotein, microtubule; HET: ADP; 2.20A {Homo
           sapiens}
          Length = 355

 Score = 25.7 bits (57), Expect = 3.9
 Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 8/31 (25%)

Query: 51  VFHYYMGVT------TMPGYPPQGGLIPEAM 75
           V  Y  G T      TM G   + G++   M
Sbjct: 109 VLAY--GATGAGKTHTMLGSADEPGVMYLTM 137


>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
           genomics consortium domain, ADP, SGC, ATP-binding,
           DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
           {Homo sapiens}
          Length = 388

 Score = 25.7 bits (57), Expect = 4.2
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 8/31 (25%)

Query: 51  VFHYYMGVT------TMPGYPPQGGLIPEAM 75
           V  Y  G T      TM G P Q G+IP A+
Sbjct: 102 VLAY--GPTGAGKTHTMLGSPEQPGVIPRAL 130


>3rlf_G Maltose transport system permease protein MALG; integral membrane
          protein, ATPase, ABC transporter, membrane
          transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
          coli} PDB: 3fh6_G 2r6g_G* 3puv_G* 3pux_G* 3puy_G*
          3puz_G* 3pv0_G* 3puw_G*
          Length = 296

 Score = 25.8 bits (57), Expect = 4.3
 Identities = 8/70 (11%), Positives = 20/70 (28%)

Query: 15 FVVFLSYWIGVPFYWHKSPALTCVLIVVGNWILLNYVFHYYMGVTTMPGYPPQGGLIPEA 74
           ++     I  P     + +L       G+ I     + ++            G + P  
Sbjct: 19 LLLLFIAAIMFPLLMVVAISLRQGNFATGSLIPEQISWDHWKLALGFSVEQADGRITPPP 78

Query: 75 MVPVAYFLNT 84
             + +  N+
Sbjct: 79 FPVLLWLWNS 88


>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
           ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
          Length = 350

 Score = 25.3 bits (56), Expect = 6.1
 Identities = 6/16 (37%), Positives = 8/16 (50%)

Query: 60  TMPGYPPQGGLIPEAM 75
           TM G   + G IP + 
Sbjct: 106 TMGGNKEEPGAIPNSF 121


>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
           alternative splicing, pyridoxal phosphate (PLP),
           structural genomics consortium (SGC); HET: PLP; 1.6A
           {Homo sapiens}
          Length = 515

 Score = 25.0 bits (55), Expect = 7.8
 Identities = 7/75 (9%), Positives = 17/75 (22%), Gaps = 17/75 (22%)

Query: 2   SPAFVVLVVTLTSFVVFLSYWI-----GVPFYWHKSPALTCVLIVVGNWILLNYVFHYYM 56
            P F   + +           I        + +  +P    +   V   +          
Sbjct: 108 HPRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAPVFVLMEEEVLRKLR--------- 158

Query: 57  GVTTMPGYPPQGGLI 71
               + G+    G+ 
Sbjct: 159 ---ALVGWSSGDGIF 170


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.137    0.448 

Gapped
Lambda     K      H
   0.267   0.0561    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,835,383
Number of extensions: 97221
Number of successful extensions: 230
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 19
Length of query: 116
Length of database: 6,701,793
Length adjustment: 79
Effective length of query: 37
Effective length of database: 4,496,034
Effective search space: 166353258
Effective search space used: 166353258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)