RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12148
         (116 letters)



>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine
          phosphatase 2C, C-terminal domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 72

 Score = 25.8 bits (57), Expect = 0.62
 Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 1/23 (4%)

Query: 48 LNYVFHYYMGVTTMPGYPPQGGL 70
          L +V    +    +P  PP G L
Sbjct: 34 LVHVMRT-LASENIPSLPPGGEL 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.137    0.448 

Gapped
Lambda     K      H
   0.267   0.0438    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 459,564
Number of extensions: 19228
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 7
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.6 bits)