BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12149
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VR6|G Chain G, Crystal Structure Of Amp-pnp Bound Enterococcus Hirae
V1-atpase [bv1]
Length = 217
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 99/199 (49%), Gaps = 2/199 (1%)
Query: 6 RLPIFPSRGAQSLMKSRLKGAQKGHSLLKKKADALQMRFRMILSKIIETKTLMGEVMKEA 65
RL + P+R + +K +L A +GH LLK K D L +F +++ K E + + + + A
Sbjct: 9 RLNVNPTRMELTRLKKQLTTATRGHKLLKDKQDELMRQFILLIRKNNELRQAIEKETQTA 68
Query: 66 AFSLAEAKFTTGDFNQVVLQNVTKAQIKIRTKKDNVAGVTLPVFESYQDGT--DTYELAG 123
AK T + L + + I + N+ V +P+ D T +T G
Sbjct: 69 MKDFVLAKSTVEEAFIDELLALPAENVSISVVEKNIMSVKVPLMNFQYDETLNETPLEYG 128
Query: 124 LARGGQQLAKLKKNYQTAIKLLVELASLQTSFVTLDDVIKITNRRVNAIEHVIIPRIEKT 183
+L + + + L++LA ++ + + + I+ T RRVNA+E++ IP++E+T
Sbjct: 129 YLHSNAELDRSIDGFTQLLPKLLKLAEVEKTCQLMAEEIEKTRRRVNALEYMTIPQLEET 188
Query: 184 LAYIISELDELEREEFYRL 202
+ YI +L+E ER E RL
Sbjct: 189 IYYIKMKLEENERAEVTRL 207
>pdb|3AON|A Chain A, Crystal Structure Of The Central Axis (Ntpd-Ntpg) In The
Catalytic Portion Of Enterococcus Hirae V-Type Sodium
Atpase
pdb|3VR4|G Chain G, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|G Chain G, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 217
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 97/199 (48%), Gaps = 2/199 (1%)
Query: 6 RLPIFPSRGAQSLMKSRLKGAQKGHSLLKKKADALQMRFRMILSKIIETKTLMGEVMKEA 65
RL + P+R + +K +L A +GH LLK K D L +F +++ K E + + + + A
Sbjct: 9 RLNVNPTRXELTRLKKQLTTATRGHKLLKDKQDELXRQFILLIRKNNELRQAIEKETQTA 68
Query: 66 AFSLAEAKFTTGDFNQVVLQNVTKAQIKIRTKKDNVAGVTLPVFESYQDGT--DTYELAG 123
AK T + L + + I + N+ V +P+ D T +T G
Sbjct: 69 XKDFVLAKSTVEEAFIDELLALPAENVSISVVEKNIXSVKVPLXNFQYDETLNETPLEYG 128
Query: 124 LARGGQQLAKLKKNYQTAIKLLVELASLQTSFVTLDDVIKITNRRVNAIEHVIIPRIEKT 183
+L + + + L++LA ++ + + I+ T RRVNA+E+ IP++E+T
Sbjct: 129 YLHSNAELDRSIDGFTQLLPKLLKLAEVEKTCQLXAEEIEKTRRRVNALEYXTIPQLEET 188
Query: 184 LAYIISELDELEREEFYRL 202
+ YI +L+E ER E RL
Sbjct: 189 IYYIKXKLEENERAEVTRL 207
>pdb|3A5C|G Chain G, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|O Chain O, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|G Chain G, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|O Chain O, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|G Chain G, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 223
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 23/193 (11%)
Query: 20 KSRLKGAQKGHSLLKKKADALQMRFRMILSKIIETKTLMGEVMKEAAFSLAEAKFTTGDF 79
+ +L+ AQKG LLKKK DAL F ++ + +E + + + KEA +L A+ G
Sbjct: 15 RGQLRLAQKGVDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYAALLLAQAFDGP- 73
Query: 80 NQVVLQNVTKAQI--KIRTKKDNVAGVTLPVFE-SYQDG-------TDTYELAGLARGGQ 129
+VV + + +NV G +P + ++ DG T Y L
Sbjct: 74 -EVVAGAALGVPPLEGVEAEVENVWGSKVPRLKATFPDGALLSPVGTPAYTL-------- 124
Query: 130 QLAKLKKNYQTAIKLLVELASLQTSFVTLDDVIKITNRRVNAIEHVIIPRIEKTLAYIIS 189
+ ++ + Y A L+ +A+ +T + + IK T RRVNA+E V+IP I + +I
Sbjct: 125 EASRAFRRYAEA---LIRVANTETRLKKIGEEIKKTTRRVNALEQVVIPGIRAQIRFIQQ 181
Query: 190 ELDELEREEFYRL 202
L++ ERE+ +RL
Sbjct: 182 VLEQREREDTFRL 194
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 112 YQDGTDTYELAGLARGGQQLAKLKKNYQTAIKLLVELASLQTSFVTLDDVIK 163
+ DG D Y+L +A GG A + A+ LL +L V DV++
Sbjct: 94 WVDGDDPYQLVAVALGGAPAATAVTDSMPALHLLPLADALGVLPVLATDVLR 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,583,050
Number of Sequences: 62578
Number of extensions: 187273
Number of successful extensions: 556
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 549
Number of HSP's gapped (non-prelim): 5
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)