Query psy12149
Match_columns 243
No_of_seqs 105 out of 624
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 19:58:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12149.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12149hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1647|consensus 100.0 5.5E-58 1.2E-62 389.8 25.0 243 1-243 1-255 (255)
2 COG1394 NtpD Archaeal/vacuolar 100.0 3.3E-56 7.1E-61 383.0 24.9 204 7-213 3-208 (211)
3 PRK00373 V-type ATP synthase s 100.0 5.1E-56 1.1E-60 383.1 24.6 199 6-207 3-204 (204)
4 TIGR00309 V_ATPase_subD H(+)-t 100.0 6.4E-56 1.4E-60 383.8 24.8 201 8-211 3-208 (209)
5 PRK02195 V-type ATP synthase s 100.0 2.3E-55 5E-60 378.1 24.9 196 8-212 4-199 (201)
6 PF01813 ATP-synt_D: ATP synth 100.0 1.4E-52 3E-57 359.5 21.1 192 14-208 1-196 (196)
7 cd02682 MIT_AAA_Arch MIT: doma 66.9 23 0.0005 25.9 5.8 50 129-179 20-72 (75)
8 PRK11637 AmiB activator; Provi 52.2 2.2E+02 0.0047 27.1 17.1 77 131-207 172-251 (428)
9 PF13851 GAS: Growth-arrest sp 49.5 1.5E+02 0.0032 25.5 8.8 54 13-66 85-138 (201)
10 PF10157 DUF2365: Uncharacteri 47.4 76 0.0016 26.3 6.4 47 129-175 102-148 (149)
11 PF11285 DUF3086: Protein of u 44.5 48 0.001 30.0 5.1 46 26-71 2-47 (283)
12 PF03670 UPF0184: Uncharacteri 39.6 1.6E+02 0.0035 22.0 6.8 53 12-64 24-76 (83)
13 PRK14127 cell division protein 34.7 2.2E+02 0.0048 22.3 7.2 53 117-175 21-73 (109)
14 PF08181 DegQ: DegQ (SacQ) fam 33.0 69 0.0015 20.8 3.1 20 147-166 5-24 (46)
15 PF08349 DUF1722: Protein of u 31.3 54 0.0012 25.5 3.0 33 163-203 46-78 (117)
16 PLN03229 acetyl-coenzyme A car 29.2 1.6E+02 0.0035 30.6 6.6 150 30-184 530-712 (762)
17 COG1196 Smc Chromosome segrega 27.8 6.5E+02 0.014 27.4 11.3 57 134-193 968-1024(1163)
18 PF08858 IDEAL: IDEAL domain; 26.8 85 0.0018 19.6 2.8 21 182-202 13-33 (37)
19 TIGR02976 phageshock_pspB phag 26.7 80 0.0017 23.1 3.0 26 152-177 41-66 (75)
20 PF06667 PspB: Phage shock pro 26.6 80 0.0017 23.1 3.0 25 152-176 41-65 (75)
21 KOG1962|consensus 24.3 2.6E+02 0.0057 24.6 6.3 43 13-55 157-199 (216)
22 PF05499 DMAP1: DNA methyltran 20.9 3.2E+02 0.0069 23.3 5.9 43 130-172 125-167 (176)
23 KOG2264|consensus 20.9 4.8E+02 0.01 26.7 7.9 53 129-182 75-128 (907)
No 1
>KOG1647|consensus
Probab=100.00 E-value=5.5e-58 Score=389.76 Aligned_cols=243 Identities=66% Similarity=0.994 Sum_probs=225.3
Q ss_pred CCcCCCCCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchh
Q psy12149 1 MSGKERLPIFPSRGAQSLMKSRLKGAQKGHSLLKKKADALQMRFRMILSKIIETKTLMGEVMKEAAFSLAEAKFTTGDFN 80 (243)
Q Consensus 1 ms~~~r~~v~PTR~~L~~lk~rl~~a~rG~~LLk~KrdaL~~e~~~~~~~~~~~r~~~~~~~~~a~~~L~~a~~~~G~~~ 80 (243)
||+.+|++|+||||+|..+|.|++.|++||.|||+|+|||...|+.+.+.+.+.+..+.+.+++|.++|+.|.+..|++.
T Consensus 1 Msg~dr~~vFPtRm~~~~MKtrlkgAq~GhsLLKrKsdAL~~rfR~i~~~i~~~k~~mg~vMr~AaFslaea~f~~gn~~ 80 (255)
T KOG1647|consen 1 MSGKDRLPVFPTRMNLTLMKTRLKGAQKGHSLLKRKSDALTVRFREILKKIVEAKMLMGEVMREAAFSLAEAKFLGGNFK 80 (255)
T ss_pred CCccccccccchHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 89889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhccccceEEEEeeeeeeeeeeceeeeccCCCCccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12149 81 QVVLQNVTKAQIKIRTKKDNVAGVTLPVFESYQDGTDTYELAGLARGGQQLAKLKKNYQTAIKLLVELASLQTSFVTLDD 160 (243)
Q Consensus 81 ~~~~~~~~~~~~~v~~~~~nvmGV~vP~~~~~~~~~~~y~~~~~~~~~~~id~a~~~f~~~l~~li~lA~~e~~~~~L~~ 160 (243)
..+.+++..+.+.|+.+.+||+||.+|.|+...++...|++.|+++||.++.++++.|.++++.+++||+++++|..|++
T Consensus 81 ~~v~q~v~~a~v~vRsk~env~GV~Lp~fe~~~dg~~~~~LtgL~rgGqqv~~~r~~Y~kAve~LVelasLqtsf~~Lde 160 (255)
T KOG1647|consen 81 HQVQQNVKQATVKVRSKKENVSGVKLPTFELYQDGIDAFPLTGLGRGGQQVARLRENYTKAVELLVELASLQTSFRTLDE 160 (255)
T ss_pred HHHHhhhhhheeeeeeeccccceeeechhhhhcccCccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999998888999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhcccccchHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhh--c-------hhhhc
Q psy12149 161 VIKITNRRVNAIEHVIIPRIEKTLAYIISELDELEREEFYRLKKIQDKKKVIKAASEAFRKSRKY--D-------EEQAF 231 (243)
Q Consensus 161 Ei~kT~RRVNALE~vlIP~l~~~IkyI~~~LeE~EREe~~RlK~vK~kk~~~~~~~~~~~~~~~~--~-------~~~~~ 231 (243)
.|+.||||||||||||||++++||.||.++|||.|||||||||+++++|.+.+++++++...... + ..++.
T Consensus 161 ~ik~TNrRVNAiEhvIIPrlenTi~YI~sELdE~eRedF~RLKKiQ~~K~~~~ek~~a~k~~e~~~~~~~~~~~~~~~~a 240 (255)
T KOG1647|consen 161 AIKVTNRRVNAIEHVIIPRLENTIAYIVSELDELEREDFYRLKKIQAKKREAKEKADAEKKLEDEGLGIDVQRNINVPAA 240 (255)
T ss_pred HHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhccccchHHHhhcccccc
Confidence 99999999999999999999999999999999999999999999999999977777775543311 1 22355
Q ss_pred cccccc---CCCCCC
Q psy12149 232 NMLEEE---DQDILF 243 (243)
Q Consensus 232 ~~~~~~---~~~~~~ 243 (243)
|++.++ |+|++|
T Consensus 241 n~~~~e~~~~~d~lf 255 (255)
T KOG1647|consen 241 NLLAGEEQMDDDVLF 255 (255)
T ss_pred ccccccccccccccC
Confidence 666532 789987
No 2
>COG1394 NtpD Archaeal/vacuolar-type H+-ATPase subunit D [Energy production and conversion]
Probab=100.00 E-value=3.3e-56 Score=383.02 Aligned_cols=204 Identities=38% Similarity=0.517 Sum_probs=188.2
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHhh
Q psy12149 7 LPIFPSRGAQSLMKSRLKGAQKGHSLLKKKADALQMRFRMILSKIIETKTLMGEVMKEAAFSLAEAKFTTGDFNQVVLQN 86 (243)
Q Consensus 7 ~~v~PTR~~L~~lk~rl~~a~rG~~LLk~KrdaL~~e~~~~~~~~~~~r~~~~~~~~~a~~~L~~a~~~~G~~~~~~~~~ 86 (243)
.+|+||||+|+++|++|++|++||+|||+|||+|+.||+.+..++.+++.++++.+++||.++..|....|......+..
T Consensus 3 ~~v~PTR~eL~~lk~rLkla~rg~~lLk~Krd~L~~ef~~i~~~~~~~r~e~~~~~~~a~~~~~~a~~~~g~~~ve~~~~ 82 (211)
T COG1394 3 LQVKPTRMELIRLKRRLKLARRGHKLLKLKRDALIMEFRAIVKEAKELREELEKELEEAYESLALASAAEGIDAVEEIAL 82 (211)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999655444555
Q ss_pred ccccceEEEEeeeeeeeeeeceeeeccCCCCcccc--ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12149 87 VTKAQIKIRTKKDNVAGVTLPVFESYQDGTDTYEL--AGLARGGQQLAKLKKNYQTAIKLLVELASLQTSFVTLDDVIKI 164 (243)
Q Consensus 87 ~~~~~~~v~~~~~nvmGV~vP~~~~~~~~~~~y~~--~~~~~~~~~id~a~~~f~~~l~~li~lA~~e~~~~~L~~Ei~k 164 (243)
++..+++|++..+|||||.||.|+......++|++ +++| +|+|+|+..|.++++.++++|++|++|++|+.||++
T Consensus 83 ~~~~~~~v~~~~~nI~GV~vP~~~~~~~~~~~~~~~~~~t~---~~ld~a~~~~~elle~li~lae~e~~~~~L~~Ei~~ 159 (211)
T COG1394 83 VQKEKLEVDVDVENIMGVVVPTFELVELTPPPYDLGILSTS---AWLDEAIEKFEELLEKLIELAELETTLRLLLEEIRK 159 (211)
T ss_pred CCCCCceeeeceeeeeeeeeeeeeeeccCCCcccccccCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567899999999999999999998655554444 5555 999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhcccccchHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHH
Q psy12149 165 TNRRVNAIEHVIIPRIEKTLAYIISELDELEREEFYRLKKIQDKKKVIK 213 (243)
Q Consensus 165 T~RRVNALE~vlIP~l~~~IkyI~~~LeE~EREe~~RlK~vK~kk~~~~ 213 (243)
|+||||||||++||++++||+||.++|||+|||+|||+|++|+++.+..
T Consensus 160 T~RRVNalE~~iIP~l~~tikyI~~~LeE~eRe~f~RlK~iK~~~e~~~ 208 (211)
T COG1394 160 TKRRVNALEYVIIPRLENTIKYIESKLEEREREDFVRLKKIKKKKEAKT 208 (211)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999987754
No 3
>PRK00373 V-type ATP synthase subunit D; Reviewed
Probab=100.00 E-value=5.1e-56 Score=383.07 Aligned_cols=199 Identities=35% Similarity=0.512 Sum_probs=183.2
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHh
Q psy12149 6 RLPIFPSRGAQSLMKSRLKGAQKGHSLLKKKADALQMRFRMILSKIIETKTLMGEVMKEAAFSLAEAKFTTGDFNQVVLQ 85 (243)
Q Consensus 6 r~~v~PTR~~L~~lk~rl~~a~rG~~LLk~KrdaL~~e~~~~~~~~~~~r~~~~~~~~~a~~~L~~a~~~~G~~~~~~~~ 85 (243)
+.+|+|||++|+.+|++|++|++||+||++|||+|+.||+++++++.++++++++.+++||++|..|.+..|+.......
T Consensus 3 ~~~v~pTr~~L~~lk~~l~~a~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~G~~~~~~~~ 82 (204)
T PRK00373 3 RLNVKPTRMELINLKRRLKLAERGHKLLKDKRDELIMEFFDILDEAKKLREEVEEELEEAYKDFLMARAVEGSLAVEEAA 82 (204)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999964333333
Q ss_pred hccccceEEEEeeeeeeeeeeceeeec-c--CCCCccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12149 86 NVTKAQIKIRTKKDNVAGVTLPVFESY-Q--DGTDTYELAGLARGGQQLAKLKKNYQTAIKLLVELASLQTSFVTLDDVI 162 (243)
Q Consensus 86 ~~~~~~~~v~~~~~nvmGV~vP~~~~~-~--~~~~~y~~~~~~~~~~~id~a~~~f~~~l~~li~lA~~e~~~~~L~~Ei 162 (243)
..+....+|.++.+|||||+||.|+.+ . ....+|+++++| +|+|+|+..|.++++.++++|++|+++++|+.||
T Consensus 83 ~~~~~~~~v~~~~~ni~GV~vP~~~~~~~~~~~~~~y~~~~t~---~~~d~a~~~~~~~l~~li~lA~~e~~~~~L~~ei 159 (204)
T PRK00373 83 ASPKESLEVDVSSKNIMGVVVPVIELSVKRTLPERGYGFLGTS---AELDEAAEKFEELLEKILELAEVEKTIQLLADEI 159 (204)
T ss_pred hCCCCCceEEEEeEEEEEEEeceEEeecccCCccCCcCcccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556899999999999999999993 3 345679998888 9999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhcccccchHHHHHHHHhhhhhHHHHHHHHHHHHh
Q psy12149 163 KITNRRVNAIEHVIIPRIEKTLAYIISELDELEREEFYRLKKIQD 207 (243)
Q Consensus 163 ~kT~RRVNALE~vlIP~l~~~IkyI~~~LeE~EREe~~RlK~vK~ 207 (243)
++|+|||||||||+||+++++|+||+++|||+|||+|||+|++|+
T Consensus 160 ~kT~RRVNALE~vvIP~le~~ik~I~~~LeE~EReef~RlK~iK~ 204 (204)
T PRK00373 160 EKTKRRVNALEYVIIPRLEETIKYIKMKLDEMERENFVRLKKIKS 204 (204)
T ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHhhhhHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999984
No 4
>TIGR00309 V_ATPase_subD H(+)-transporting ATP synthase, vacuolar type, subunit D. Although this ATPase can run backwards, using a proton gradient to synthesize ATP, the primary biological role is to acidify some compartment, such as yeast vacuole (a lysosomal homolog) or the interior of a prokaryote.
Probab=100.00 E-value=6.4e-56 Score=383.77 Aligned_cols=201 Identities=41% Similarity=0.599 Sum_probs=184.9
Q ss_pred CCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchh-HHHHhh
Q psy12149 8 PIFPSRGAQSLMKSRLKGAQKGHSLLKKKADALQMRFRMILSKIIETKTLMGEVMKEAAFSLAEAKFTTGDFN-QVVLQN 86 (243)
Q Consensus 8 ~v~PTR~~L~~lk~rl~~a~rG~~LLk~KrdaL~~e~~~~~~~~~~~r~~~~~~~~~a~~~L~~a~~~~G~~~-~~~~~~ 86 (243)
+|+|||++|+.+|++|++|++||+||++|||+|+.||++++.++.+++.++++.+.+||+++..|.+..|... ...+.+
T Consensus 3 ~v~PTr~~L~~lk~rl~~a~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~~~ 82 (209)
T TIGR00309 3 KVNPTRMELLKLKDKLKMAKRGYSLLKLKRDALIMEFRQILERAKDIKNKMEQKLKEAISDLIEAQSVMGPFAVWIAALS 82 (209)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999643 334445
Q ss_pred ccccceEEEEeeeeeeeeeeceeeeccC----CCCccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12149 87 VTKAQIKIRTKKDNVAGVTLPVFESYQD----GTDTYELAGLARGGQQLAKLKKNYQTAIKLLVELASLQTSFVTLDDVI 162 (243)
Q Consensus 87 ~~~~~~~v~~~~~nvmGV~vP~~~~~~~----~~~~y~~~~~~~~~~~id~a~~~f~~~l~~li~lA~~e~~~~~L~~Ei 162 (243)
++.+.+.|.++.+|||||+||.|+..+. ..++||++++| +|+|+|+..|+++++.++++|++|+++++|+.||
T Consensus 83 v~~~~~~v~~~~~ni~GV~vP~~~~~~~~~~~~~~~y~l~~t~---~~~d~a~~~~~~~l~~li~lA~~e~~~~~L~~eI 159 (209)
T TIGR00309 83 VVTARFEVDMKSKNIMGVVVPVFDSYEIRRKVHERGYGLLFTS---YKVDEAAEIYEEAVELIVELAEIETTIRLLAEEI 159 (209)
T ss_pred CCcccceEEEEEEEEeeEEcceeEeeccccCccccCcCcccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5546689999999999999999999642 22458877777 9999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhcccccchHHHHHHHHhhhhhHHHHHHHHHHHHhhHHH
Q psy12149 163 KITNRRVNAIEHVIIPRIEKTLAYIISELDELEREEFYRLKKIQDKKKV 211 (243)
Q Consensus 163 ~kT~RRVNALE~vlIP~l~~~IkyI~~~LeE~EREe~~RlK~vK~kk~~ 211 (243)
++|+|||||||||+||+++++|+||+++|||+|||+|||+|++|+++.+
T Consensus 160 ~~T~RRVNALE~vvIP~l~~~ik~I~~~LeE~EREef~RlK~vK~k~~~ 208 (209)
T TIGR00309 160 EITKRRVNALEHVIIPRLKNTIKYINMRLDEMDRENFVRLKKIKSSKEK 208 (209)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999988753
No 5
>PRK02195 V-type ATP synthase subunit D; Provisional
Probab=100.00 E-value=2.3e-55 Score=378.07 Aligned_cols=196 Identities=20% Similarity=0.180 Sum_probs=184.9
Q ss_pred CCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHhhc
Q psy12149 8 PIFPSRGAQSLMKSRLKGAQKGHSLLKKKADALQMRFRMILSKIIETKTLMGEVMKEAAFSLAEAKFTTGDFNQVVLQNV 87 (243)
Q Consensus 8 ~v~PTR~~L~~lk~rl~~a~rG~~LLk~KrdaL~~e~~~~~~~~~~~r~~~~~~~~~a~~~L~~a~~~~G~~~~~~~~~~ 87 (243)
+|.|||++|+++|++|++|++||+||++|||+|+.||+++.+++.++++++++.+.+||.++.+|....|.. ..++
T Consensus 4 ~v~pTK~eL~~lk~~L~~a~rg~~lLk~KR~~Li~e~~~~~~~~~~lr~~~~~~~~~a~~~l~~a~~~~g~~----~~~~ 79 (201)
T PRK02195 4 KIKLTKNSLKKQKKQLKMLERYLPTLKLKKAQLQAEVRRAKAEAAELEQEYQKLRQAIEAWISLFSEPLYFD----EDLI 79 (201)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc----hhcC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999964 1233
Q ss_pred cccceEEEEeeeeeeeeeeceeeeccCCCCccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy12149 88 TKAQIKIRTKKDNVAGVTLPVFESYQDGTDTYELAGLARGGQQLAKLKKNYQTAIKLLVELASLQTSFVTLDDVIKITNR 167 (243)
Q Consensus 88 ~~~~~~v~~~~~nvmGV~vP~~~~~~~~~~~y~~~~~~~~~~~id~a~~~f~~~l~~li~lA~~e~~~~~L~~Ei~kT~R 167 (243)
+ ...|.++.+|||||+||.|+.......+||+++|| +|+|+|+..|.++++.++++|++|+++++|+.||++|+|
T Consensus 80 ~--~~~v~~~~~nimGV~vP~~~~~~~~~~~Y~~~~t~---~~lD~a~~~~~~ll~~~i~lAe~E~~l~~L~~ei~kT~r 154 (201)
T PRK02195 80 K--VKKVEKDYENIAGVEVPILDSIEFEIIEYSLLNTP---IWVDTGIELLKELVQLKIEAEVLQERLLLLEEELRKTTQ 154 (201)
T ss_pred C--cceEEEeeeeEeeeeeceeeeeecCCCCcCCccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 45888999999999999999987766789999999 999999999999999999999999999999999999999
Q ss_pred hhhhhhhcccccchHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHH
Q psy12149 168 RVNAIEHVIIPRIEKTLAYIISELDELEREEFYRLKKIQDKKKVI 212 (243)
Q Consensus 168 RVNALE~vlIP~l~~~IkyI~~~LeE~EREe~~RlK~vK~kk~~~ 212 (243)
||||||||+||+++++|+||+++|||+|||+|||+|++|++..+.
T Consensus 155 RVNalE~v~IP~~~~~ik~I~~~LeE~ERe~~~RlK~iK~~~~~~ 199 (201)
T PRK02195 155 RVNLFEKVLIPETKANIKKIKIFLGDQETAAVVRQKIAKKKIEKR 199 (201)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999887653
No 6
>PF01813 ATP-synt_D: ATP synthase subunit D ; InterPro: IPR002699 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the D subunit found in V1 and A1 complexes of V- and A-ATPases, respectively. Subunit D appears to be located in the central stalk, whereas subunits E and G form part of the peripheral stalk connecting V1 and V0. This subunit is the most likely homologue to the gamma subunit of the F1 complex in F-ATPases, which undergoes rotation during ATP hydrolysis and serves an essential function in rotary catalysis [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0042626 ATPase activity, coupled to transmembrane movement of substances, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3A5C_G 3A5D_G 3J0J_G 3AON_A.
Probab=100.00 E-value=1.4e-52 Score=359.46 Aligned_cols=192 Identities=41% Similarity=0.608 Sum_probs=167.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHhhccccceE
Q psy12149 14 GAQSLMKSRLKGAQKGHSLLKKKADALQMRFRMILSKIIETKTLMGEVMKEAAFSLAEAKFTTGDFNQVVLQNVTKAQIK 93 (243)
Q Consensus 14 ~~L~~lk~rl~~a~rG~~LLk~KrdaL~~e~~~~~~~~~~~r~~~~~~~~~a~~~L~~a~~~~G~~~~~~~~~~~~~~~~ 93 (243)
|+|+++|+++++|++||+||++|||+|+.||+++.+++.+.+..+++.+++||++|.+|.+..|......+...+....+
T Consensus 1 m~L~~lk~rl~~a~rg~~lLk~Krd~L~~e~~~~~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~~~~~~~~~ 80 (196)
T PF01813_consen 1 MELIRLKRRLKLAKRGHKLLKKKRDALIREFRKLIKEAEELREELEELLKEAYFSLALARMSMGEDFVSSVAESVPESVE 80 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHTS-S---E
T ss_pred CcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHhcCCCCcE
Confidence 79999999999999999999999999999999999999999999999999999999999998884333333333333689
Q ss_pred EEEeeeeeeeeeeceeeecc----CCCCccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy12149 94 IRTKKDNVAGVTLPVFESYQ----DGTDTYELAGLARGGQQLAKLKKNYQTAIKLLVELASLQTSFVTLDDVIKITNRRV 169 (243)
Q Consensus 94 v~~~~~nvmGV~vP~~~~~~----~~~~~y~~~~~~~~~~~id~a~~~f~~~l~~li~lA~~e~~~~~L~~Ei~kT~RRV 169 (243)
|.++.+|||||++|.|+... ...++||++++| +|+|+|+..|+++++.++++|++|+++++|+.||++|+|||
T Consensus 81 v~~~~~ni~GV~vP~~~~~~~~~~~~~~~y~~~~~~---~~~d~a~~~~~~~l~~~i~lA~~e~~~~~L~~ei~kT~RRV 157 (196)
T PF01813_consen 81 VEVKERNIMGVRVPVLEVKEVRRPFPSPPYGLLGTP---PWLDEAREKFEELLELLIELAELETALRRLAEEIRKTQRRV 157 (196)
T ss_dssp EEEEEEEETTEEEEEEEEE--GGTTS------TT-----HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCHHHHHHCHHH
T ss_pred EEEEEEEEEEEEeceEEeeecccccccccCCcccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988 455678888777 99999999999999999999999999999999999999999
Q ss_pred hhhhhcccccchHHHHHHHHhhhhhHHHHHHHHHHHHhh
Q psy12149 170 NAIEHVIIPRIEKTLAYIISELDELEREEFYRLKKIQDK 208 (243)
Q Consensus 170 NALE~vlIP~l~~~IkyI~~~LeE~EREe~~RlK~vK~k 208 (243)
|||||++||++++||+||+++|||+|||+|||+|++|+|
T Consensus 158 NALE~vlIP~l~~tik~I~~~LeE~EREef~RlK~iK~K 196 (196)
T PF01813_consen 158 NALEKVLIPRLEETIKYIRSELEEREREEFFRLKKIKKK 196 (196)
T ss_dssp HHHHHCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999976
No 7
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=66.86 E-value=23 Score=25.90 Aligned_cols=50 Identities=20% Similarity=0.350 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhhhhhhccccc
Q psy12149 129 QQLAKLKKNYQTAIKLLVELASL---QTSFVTLDDVIKITNRRVNAIEHVIIPR 179 (243)
Q Consensus 129 ~~id~a~~~f~~~l~~li~lA~~---e~~~~~L~~Ei~kT~RRVNALE~vlIP~ 179 (243)
+...+|...|.++++.++.+... ...-..+..=|..-..|+++|+..+ |.
T Consensus 20 gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~~v-~~ 72 (75)
T cd02682 20 GNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEKQN-PA 72 (75)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHc-cc
Confidence 56778999999999999999999 8888888888999999999999885 63
No 8
>PRK11637 AmiB activator; Provisional
Probab=52.22 E-value=2.2e+02 Score=27.11 Aligned_cols=77 Identities=19% Similarity=0.161 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc---ccccchHHHHHHHHhhhhhHHHHHHHHHHHHh
Q psy12149 131 LAKLKKNYQTAIKLLVELASLQTSFVTLDDVIKITNRRVNAIEHV---IIPRIEKTLAYIISELDELEREEFYRLKKIQD 207 (243)
Q Consensus 131 id~a~~~f~~~l~~li~lA~~e~~~~~L~~Ei~kT~RRVNALE~v---lIP~l~~~IkyI~~~LeE~EREe~~RlK~vK~ 207 (243)
++.....-.++....-++......+..+..+....+........- ++=.+...++.....|.+.++++----+.+..
T Consensus 172 l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 172 IAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444445555555555544444444 56666777777777777776655444444443
No 9
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=49.50 E-value=1.5e+02 Score=25.54 Aligned_cols=54 Identities=22% Similarity=0.235 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12149 13 RGAQSLMKSRLKGAQKGHSLLKKKADALQMRFRMILSKIIETKTLMGEVMKEAA 66 (243)
Q Consensus 13 R~~L~~lk~rl~~a~rG~~LLk~KrdaL~~e~~~~~~~~~~~r~~~~~~~~~a~ 66 (243)
|..|..+|.++...++-+.-|++--++|...|..+..+..+++...+..+.++.
T Consensus 85 K~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evq 138 (201)
T PF13851_consen 85 KQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQ 138 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888888888888888887777777776665544
No 10
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=47.38 E-value=76 Score=26.25 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q psy12149 129 QQLAKLKKNYQTAIKLLVELASLQTSFVTLDDVIKITNRRVNAIEHV 175 (243)
Q Consensus 129 ~~id~a~~~f~~~l~~li~lA~~e~~~~~L~~Ei~kT~RRVNALE~v 175 (243)
-.+|.++.....++...-+|-.--..++.|+..|+..++-|..||..
T Consensus 102 dsvD~sik~~y~liakceELn~~M~~v~~La~qIK~Ik~~lD~lE~~ 148 (149)
T PF10157_consen 102 DSVDASIKSMYTLIAKCEELNESMKPVYKLAQQIKDIKKLLDLLESL 148 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56888888888899999999999999999999999999999999864
No 11
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=44.51 E-value=48 Score=30.04 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=38.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12149 26 AQKGHSLLKKKADALQMRFRMILSKIIETKTLMGEVMKEAAFSLAE 71 (243)
Q Consensus 26 a~rG~~LLk~KrdaL~~e~~~~~~~~~~~r~~~~~~~~~a~~~L~~ 71 (243)
.+.|+.-|+.++++|..++.++-.+-++.++++...|......++.
T Consensus 2 v~~~L~eL~qrk~~Lq~eIe~LerR~~ri~~EmrtsFaG~Sq~lA~ 47 (283)
T PF11285_consen 2 VQEALKELEQRKQALQIEIEQLERRRERIEKEMRTSFAGQSQDLAI 47 (283)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHH
Confidence 4568889999999999999999998888888888888776665544
No 12
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=39.65 E-value=1.6e+02 Score=22.03 Aligned_cols=53 Identities=13% Similarity=0.183 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12149 12 SRGAQSLMKSRLKGAQKGHSLLKKKADALQMRFRMILSKIIETKTLMGEVMKE 64 (243)
Q Consensus 12 TR~~L~~lk~rl~~a~rG~~LLk~KrdaL~~e~~~~~~~~~~~r~~~~~~~~~ 64 (243)
.-.+...+-..|....-.++-|+.|-|-|..++++++..-.+.|.++.+...+
T Consensus 24 ~~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~~ 76 (83)
T PF03670_consen 24 DEEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQLSK 76 (83)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35677888899999999999999999999999999999888888887766543
No 13
>PRK14127 cell division protein GpsB; Provisional
Probab=34.73 E-value=2.2e+02 Score=22.25 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=42.8
Q ss_pred CccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q psy12149 117 DTYELAGLARGGQQLAKLKKNYQTAIKLLVELASLQTSFVTLDDVIKITNRRVNAIEHV 175 (243)
Q Consensus 117 ~~y~~~~~~~~~~~id~a~~~f~~~l~~li~lA~~e~~~~~L~~Ei~kT~RRVNALE~v 175 (243)
.||..-... .++|.....|+.+.. +.+.++..+.+|..++...+.++...+..
T Consensus 21 RGYd~~EVD---~FLd~V~~dye~l~~---e~~~Lk~e~~~l~~~l~e~~~~~~~~~~~ 73 (109)
T PRK14127 21 RGYDQDEVD---KFLDDVIKDYEAFQK---EIEELQQENARLKAQVDELTKQVSVGASS 73 (109)
T ss_pred CCCCHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 577777777 889999998888866 56677888999999999999988877544
No 14
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=33.03 E-value=69 Score=20.78 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy12149 147 ELASLQTSFVTLDDVIKITN 166 (243)
Q Consensus 147 ~lA~~e~~~~~L~~Ei~kT~ 166 (243)
++.++.+-+++|..||+.|+
T Consensus 5 ~ieelkqll~rle~eirett 24 (46)
T PF08181_consen 5 KIEELKQLLWRLENEIRETT 24 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677888999999999886
No 15
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=31.27 E-value=54 Score=25.53 Aligned_cols=33 Identities=21% Similarity=0.490 Sum_probs=27.5
Q ss_pred HHHhhhhhhhhhcccccchHHHHHHHHhhhhhHHHHHHHHH
Q psy12149 163 KITNRRVNAIEHVIIPRIEKTLAYIISELDELEREEFYRLK 203 (243)
Q Consensus 163 ~kT~RRVNALE~vlIP~l~~~IkyI~~~LeE~EREe~~RlK 203 (243)
-.....+|+|.|++ -|++..+++.|++.|..+.
T Consensus 46 ~~~~~~~Nvl~Hi~--------Gyfk~~ls~~EK~~~~~~i 78 (117)
T PF08349_consen 46 PTRGSHINVLQHIF--------GYFKKKLSSEEKQHFLDLI 78 (117)
T ss_pred CCchhHHHHHHHHH--------HHHHHhCCHHHHHHHHHHH
Confidence 44567789999875 7999999999999998764
No 16
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=29.20 E-value=1.6e+02 Score=30.60 Aligned_cols=150 Identities=19% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH----------------HHHHHHHH------HHHHHHHHHHHHHHHHHhccccccchhHHHHhhc
Q psy12149 30 HSLLKKKADALQMRFR----------------MILSKIIE------TKTLMGEVMKEAAFSLAEAKFTTGDFNQVVLQNV 87 (243)
Q Consensus 30 ~~LLk~KrdaL~~e~~----------------~~~~~~~~------~r~~~~~~~~~a~~~L~~a~~~~G~~~~~~~~~~ 87 (243)
|+-|+.|.++|-.+.+ ++-+.+.+ .+++++..+.++.. ..+.... +.+..+.+-+
T Consensus 530 ~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~~~~~kek~ea~~aev~~--~g~s~~~-~~~~~lkeki 606 (762)
T PLN03229 530 YLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEVAS--SGASSGD-ELDDDLKEKV 606 (762)
T ss_pred cHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHh--cCccccC-CCCHHHHHHH
Q ss_pred cccceEEEEeee---eeeeeeeceeeeccCCCCccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12149 88 TKAQIKIRTKKD---NVAGVTLPVFESYQDGTDTYELAGLARGGQQLAKLKKNYQTAIKLLVELASLQTSFVTLDDVIKI 164 (243)
Q Consensus 88 ~~~~~~v~~~~~---nvmGV~vP~~~~~~~~~~~y~~~~~~~~~~~id~a~~~f~~~l~~li~lA~~e~~~~~L~~Ei~k 164 (243)
....-+|..... +.+|+.+-.+...+....+-.+-..+. .-|+..-....+-++..+.-..+...+..|-.|+.+
T Consensus 607 ~~~~~Ei~~eie~v~~S~gL~~~~~~k~e~a~~~~~p~~~~k--~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evak 684 (762)
T PLN03229 607 EKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQ--EKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAK 684 (762)
T ss_pred HHHHHHHHHHHHHHHhccCchhhhhhhhhhcccccCCChhhH--HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Q ss_pred Hh--------hhhhhhhhcccccchHHH
Q psy12149 165 TN--------RRVNAIEHVIIPRIEKTL 184 (243)
Q Consensus 165 T~--------RRVNALE~vlIP~l~~~I 184 (243)
.. .+|-|||+-|=+++-+.+
T Consensus 685 a~~~pd~~~k~kieal~~qik~~~~~a~ 712 (762)
T PLN03229 685 ASKTPDVTEKEKIEALEQQIKQKIAEAL 712 (762)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHh
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=27.80 E-value=6.5e+02 Score=27.42 Aligned_cols=57 Identities=12% Similarity=0.188 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccchHHHHHHHHhhhh
Q psy12149 134 LKKNYQTAIKLLVELASLQTSFVTLDDVIKITNRRVNAIEHVIIPRIEKTLAYIISELDE 193 (243)
Q Consensus 134 a~~~f~~~l~~li~lA~~e~~~~~L~~Ei~kT~RRVNALE~vlIP~l~~~IkyI~~~LeE 193 (243)
|.+.|+++-+ ++..+......|..+.++....++-++......+.++...|...+.+
T Consensus 968 Aiee~e~~~~---r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~~ 1024 (1163)
T COG1196 968 AIEEYEEVEE---RYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSE 1024 (1163)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666665544 45666677777778888888888888888888888888888776654
No 18
>PF08858 IDEAL: IDEAL domain; InterPro: IPR014957 This entry represents the C-terminal domain of Bacteriophage SPP1, p90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. his domain may also be referred to as the IDEAL domain, after the sequence of the most conserved region of the domain.; PDB: 3DO9_A.
Probab=26.79 E-value=85 Score=19.60 Aligned_cols=21 Identities=38% Similarity=0.571 Sum_probs=16.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHH
Q psy12149 182 KTLAYIISELDELEREEFYRL 202 (243)
Q Consensus 182 ~~IkyI~~~LeE~EREe~~Rl 202 (243)
.-..-|-..|+.++++.|+++
T Consensus 13 ~L~~~ID~ALd~~D~e~F~~L 33 (37)
T PF08858_consen 13 QLLELIDEALDNRDKEWFYEL 33 (37)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHH
Confidence 345578999999999999987
No 19
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=26.70 E-value=80 Score=23.09 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhccc
Q psy12149 152 QTSFVTLDDVIKITNRRVNAIEHVII 177 (243)
Q Consensus 152 e~~~~~L~~Ei~kT~RRVNALE~vlI 177 (243)
+..+..|....++-..||.+||.++=
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~ILd 66 (75)
T TIGR02976 41 QALLQELYAKADRLEERIDTLERILD 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455666667778889999998763
No 20
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=26.64 E-value=80 Score=23.10 Aligned_cols=25 Identities=12% Similarity=0.337 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcc
Q psy12149 152 QTSFVTLDDVIKITNRRVNAIEHVI 176 (243)
Q Consensus 152 e~~~~~L~~Ei~kT~RRVNALE~vl 176 (243)
+..+..|.+.-++-..||.+||.++
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~IL 65 (75)
T PF06667_consen 41 EQRLQELYEQAERMEERIETLERIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666677788999999876
No 21
>KOG1962|consensus
Probab=24.30 E-value=2.6e+02 Score=24.57 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12149 13 RGAQSLMKSRLKGAQKGHSLLKKKADALQMRFRMILSKIIETK 55 (243)
Q Consensus 13 R~~L~~lk~rl~~a~rG~~LLk~KrdaL~~e~~~~~~~~~~~r 55 (243)
+.++..++.++..-..-++-++.+.++|......+..++..+-
T Consensus 157 ~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLl 199 (216)
T KOG1962|consen 157 KADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLL 199 (216)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 3445555555555555555555555555555554444444433
No 22
>PF05499 DMAP1: DNA methyltransferase 1-associated protein 1 (DMAP1); InterPro: IPR008468 DNA methylation can contribute to transcriptional silencing through several transcriptionally repressive complexes, which include methyl-CpG binding domain proteins (MBDs) and histone deacetylases (HDACs). The chief enzyme that maintains mammalian DNA methylation, DNMT1, can also establish a repressive transcription complex. The non-catalytic N terminus of DNMT1 binds to HDAC2 and DMAP1 (for DNMT1 associated protein), and can mediate transcriptional repression. DMAP1 has intrinsic transcription repressive activity, and binds to the transcriptional co-repressor TSG101. DMAP1 is targeted to replication foci through interaction with the far N terminus of DNMT1 throughout S phase, whereas HDAC2 joins DNMT1 and DMAP1 only during late S phase, providing a platform for how histones may become deacetylated in heterochromatin following replication [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.93 E-value=3.2e+02 Score=23.32 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy12149 130 QLAKLKKNYQTAIKLLVELASLQTSFVTLDDVIKITNRRVNAI 172 (243)
Q Consensus 130 ~id~a~~~f~~~l~~li~lA~~e~~~~~L~~Ei~kT~RRVNAL 172 (243)
--.+.+..|.++-..|+-|-++..++..-..|+...+-|-+||
T Consensus 125 PTe~Ic~~fneLRsdivlL~eLk~a~~~~E~El~~lr~r~eal 167 (176)
T PF05499_consen 125 PTEEICQEFNELRSDIVLLYELKQALQNCEYELQSLRHRYEAL 167 (176)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 3467899999999999999999999999999999999998886
No 23
>KOG2264|consensus
Probab=20.89 E-value=4.8e+02 Score=26.70 Aligned_cols=53 Identities=15% Similarity=0.356 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccchH
Q psy12149 129 QQLAKLKKNYQTAI-KLLVELASLQTSFVTLDDVIKITNRRVNAIEHVIIPRIEK 182 (243)
Q Consensus 129 ~~id~a~~~f~~~l-~~li~lA~~e~~~~~L~~Ei~kT~RRVNALE~vlIP~l~~ 182 (243)
-.+-.+.......+ ..-++|-++|.+=+.|..||.+.|.++.+|.+ .||+-+-
T Consensus 75 ~s~~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~-~i~~~q~ 128 (907)
T KOG2264|consen 75 YSIGRILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKR-LIPQKQL 128 (907)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHhHH
Confidence 33333443333333 34578888999999999999999999888754 3444433
Done!