Query psy12149
Match_columns 243
No_of_seqs 105 out of 624
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 19:59:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12149.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12149hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3aon_A V-type sodium ATPase su 100.0 1.8E-58 6.2E-63 400.5 22.0 202 7-211 10-216 (217)
2 3a5c_G V-type ATP synthase sub 100.0 1.1E-57 3.9E-62 396.9 12.4 200 8-211 3-203 (223)
3 3he5_A Synzip1; heterodimeric 42.2 36 0.0012 21.2 3.8 45 148-193 5-49 (49)
4 3swf_A CGMP-gated cation chann 35.1 53 0.0018 23.0 4.3 31 148-178 16-50 (74)
5 1lq7_A Alpha3W; three helix bu 24.1 1.6E+02 0.0054 19.4 5.1 39 126-164 22-66 (67)
6 3ggy_A Increased sodium tolera 24.1 1.4E+02 0.0049 24.4 5.8 41 11-51 4-44 (193)
7 3frr_A Uncharacterized protein 23.5 1.6E+02 0.0053 24.2 5.9 37 16-52 10-46 (191)
8 2l5g_B Putative uncharacterize 21.9 78 0.0027 19.7 2.8 23 152-174 8-30 (42)
9 3ljm_A Coil Ser L9C; de novo d 19.6 1.3E+02 0.0045 16.9 3.2 23 152-174 7-29 (31)
10 3g9r_A Fusion complex of HIV-1 19.1 1.4E+02 0.0046 18.4 3.4 21 146-166 21-41 (42)
No 1
>3aon_A V-type sodium ATPase subunit D; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=100.00 E-value=1.8e-58 Score=400.50 Aligned_cols=202 Identities=26% Similarity=0.364 Sum_probs=167.5
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHhh
Q psy12149 7 LPIFPSRGAQSLMKSRLKGAQKGHSLLKKKADALQMRFRMILSKIIETKTLMGEVMKEAAFSLAEAKFTTGDFNQVVLQN 86 (243)
Q Consensus 7 ~~v~PTR~~L~~lk~rl~~a~rG~~LLk~KrdaL~~e~~~~~~~~~~~r~~~~~~~~~a~~~L~~a~~~~G~~~~~~~~~ 86 (243)
.+|+|||++|+.+|++|++|++||+|||+|||+|+.||+++.+++.++++++++.+++||++|.+|.+..|+.....+..
T Consensus 10 ~~v~PTR~~L~~lK~rL~~a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~~ 89 (217)
T 3aon_A 10 LNVNPTRMELTRLKKQLTTATRGHKLLKDKQDELMRQFILLIRKNNELRQAIEKETQTAMKDFVLAKSTVEEAFIDELLA 89 (217)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHh
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999642222223
Q ss_pred ccccceEEEEeeeeeeeeeeceeeecc-----CCCCccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy12149 87 VTKAQIKIRTKKDNVAGVTLPVFESYQ-----DGTDTYELAGLARGGQQLAKLKKNYQTAIKLLVELASLQTSFVTLDDV 161 (243)
Q Consensus 87 ~~~~~~~v~~~~~nvmGV~vP~~~~~~-----~~~~~y~~~~~~~~~~~id~a~~~f~~~l~~li~lA~~e~~~~~L~~E 161 (243)
.+.....|.++.+|||||+||.|+... ....+||+++++ +|+|+|+..|.++++.++++|++|+++++|+.|
T Consensus 90 ~~~~~~~v~~~~~nImGV~vP~~~~~~~~~~~~~~~~ygl~~t~---~~ld~a~~~~~~~l~~lvelA~le~~~~~L~~e 166 (217)
T 3aon_A 90 LPAENVSISVVEKNIMSVKVPLMNFQYDETLNETPLEYGYLHSN---AELDRSIDGFTQLLPKLLKLAEVEKTCQLMAEE 166 (217)
T ss_dssp SCSCCCEEEEEEEEETTEEEEEEEEECCGGGTTSCCCCCCTTCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEEEEEEEEEEeceEEEEecccccCCcCCcCcccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333468999999999999999999873 233568776666 999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhhcccccchHHHHHHHHhhhhhHHHHHHHHHHHHhhHHH
Q psy12149 162 IKITNRRVNAIEHVIIPRIEKTLAYIISELDELEREEFYRLKKIQDKKKV 211 (243)
Q Consensus 162 i~kT~RRVNALE~vlIP~l~~~IkyI~~~LeE~EREe~~RlK~vK~kk~~ 211 (243)
|++|+|||||||||+||++++||+||.++|||+|||+|||+|++|+++.+
T Consensus 167 IkkT~RRVNALE~viIP~~e~tikyI~~~LdE~EReef~RlKkiK~~~~~ 216 (217)
T 3aon_A 167 IEKTRRRVNALEYMTIPQLEETIYYIKMKLEENERAEVTRLIKVKNMGTE 216 (217)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHC---------------
T ss_pred HHHHhHHHHHhhhhhccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999998764
No 2
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation, vacuolar type, hydrolase, ATP synthesis, ATP-binding, hydrogen ION transport; HET: ADP; 4.51A {Thermus thermophilus} PDB: 3a5d_G 3j0j_G*
Probab=100.00 E-value=1.1e-57 Score=396.90 Aligned_cols=200 Identities=28% Similarity=0.364 Sum_probs=123.5
Q ss_pred CCCCChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccch-hHHHHhh
Q psy12149 8 PIFPSRGAQSLMKSRLKGAQKGHSLLKKKADALQMRFRMILSKIIETKTLMGEVMKEAAFSLAEAKFTTGDF-NQVVLQN 86 (243)
Q Consensus 8 ~v~PTR~~L~~lk~rl~~a~rG~~LLk~KrdaL~~e~~~~~~~~~~~r~~~~~~~~~a~~~L~~a~~~~G~~-~~~~~~~ 86 (243)
+|+|||++|+.+|++|++|++||+|||+|||+|+.||+++.+++.+++.++++.+++||++|.+|.+..|+. ...++.+
T Consensus 3 ~v~PTR~~L~~lK~rL~~a~rG~~LLk~Krd~L~~ef~~i~~~~~~~r~~~~~~~~~a~~~l~~a~~~~g~~~~~~~~~~ 82 (223)
T 3a5c_G 3 QVSPTRMNLLQRRGQLRLAQKGVDLLKKKRDALVAEFFGLVREAMEARKALDQAAKEAYAALLLAQAFDGPEVVAGAALG 82 (223)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHhc
Confidence 699999999999999999999999999999999999999999999999999999999999999999999953 2223223
Q ss_pred ccccceEEEEeeeeeeeeeeceeeeccCCCCccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy12149 87 VTKAQIKIRTKKDNVAGVTLPVFESYQDGTDTYELAGLARGGQQLAKLKKNYQTAIKLLVELASLQTSFVTLDDVIKITN 166 (243)
Q Consensus 87 ~~~~~~~v~~~~~nvmGV~vP~~~~~~~~~~~y~~~~~~~~~~~id~a~~~f~~~l~~li~lA~~e~~~~~L~~Ei~kT~ 166 (243)
+ .....|.++.+|||||+||.|+.......+||+++++ +|+|+|+..|.++++.++++|++|+++++|+.||++|+
T Consensus 83 ~-~~~~~v~~~~~nImGV~vP~~~~~~~~~~~ygl~~t~---~~ld~a~~~~~~~l~~lvelA~le~~~~~L~~eIkkT~ 158 (223)
T 3a5c_G 83 V-PPLEGVEAEVENVWGSKVPRLKATFPDGALLSPVGTP---AYTLEASRAFRRYAEALIRVANTETRLKKIGEEIKKTT 158 (223)
T ss_dssp -----------------------------------------------------CHHHHHHTHHHHHHHHHHHTHHHHHHT
T ss_pred C-CCCeEEEEEEEEEEEEEeceEEeccCCCCCcCcccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 3357999999999999999999875445668777666 99999999999999999999999999999999999999
Q ss_pred hhhhhhhhcccccchHHHHHHHHhhhhhHHHHHHHHHHHHhhHHH
Q psy12149 167 RRVNAIEHVIIPRIEKTLAYIISELDELEREEFYRLKKIQDKKKV 211 (243)
Q Consensus 167 RRVNALE~vlIP~l~~~IkyI~~~LeE~EREe~~RlK~vK~kk~~ 211 (243)
|||||||||+||++++||+||.++|||+|||+|||+|++|+++.+
T Consensus 159 RRVNALE~viIP~le~tikyI~~~LdE~EReef~RlKkiK~k~~~ 203 (223)
T 3a5c_G 159 RRVNALEQVVIPGIRAQIRFIQQVLEQREREDTFRLKRIKGKIEA 203 (223)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998876
No 3
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=42.15 E-value=36 Score=21.20 Aligned_cols=45 Identities=20% Similarity=0.347 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhcccccchHHHHHHHHhhhh
Q psy12149 148 LASLQTSFVTLDDVIKITNRRVNAIEHVIIPRIEKTLAYIISELDE 193 (243)
Q Consensus 148 lA~~e~~~~~L~~Ei~kT~RRVNALE~vlIP~l~~~IkyI~~~LeE 193 (243)
+|.+++.+..|..|-.. -.+-|.-.+-+|.-++..|...+-.++|
T Consensus 5 vaqlenevaslenenet-lkkknlhkkdliaylekeianlrkkiee 49 (49)
T 3he5_A 5 VAQLENEVASLENENET-LKKKNLHKKDLIAYLEKEIANLRKKIEE 49 (49)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhcccHH-HHHhcccHHHHHHHHHHHHHHHHHHhcC
Confidence 46677777888777554 4455888888888888888777666553
No 4
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=35.13 E-value=53 Score=23.01 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHH----Hhhhhhhhhhcccc
Q psy12149 148 LASLQTSFVTLDDVIKI----TNRRVNAIEHVIIP 178 (243)
Q Consensus 148 lA~~e~~~~~L~~Ei~k----T~RRVNALE~vlIP 178 (243)
+-.++++|.+|..|... ..+|+.-||+.+.|
T Consensus 16 ld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 16 VDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44678899998888654 45899999998877
No 5
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=24.13 E-value=1.6e+02 Score=19.36 Aligned_cols=39 Identities=28% Similarity=0.465 Sum_probs=31.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q psy12149 126 RGGQQLAKLKKNYQTAIKLLVEL------ASLQTSFVTLDDVIKI 164 (243)
Q Consensus 126 ~~~~~id~a~~~f~~~l~~li~l------A~~e~~~~~L~~Ei~k 164 (243)
.||..|.+....|+++-..+-++ --.+..+..|.+||++
T Consensus 22 ggggrieelkkkweelkkkieelggggevkkveeevkkleeeikk 66 (67)
T 1lq7_A 22 GGGGRIEELKKKWEELKKKIEELGGGGEVKKVEEEVKKLEEEIKK 66 (67)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHTTSSSTHHHHHHHHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhc
Confidence 35688999999999998888765 4567778888888875
No 6
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=24.12 E-value=1.4e+02 Score=24.42 Aligned_cols=41 Identities=15% Similarity=0.090 Sum_probs=33.2
Q ss_pred CChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy12149 11 PSRGAQSLMKSRLKGAQKGHSLLKKKADALQMRFRMILSKI 51 (243)
Q Consensus 11 PTR~~L~~lk~rl~~a~rG~~LLk~KrdaL~~e~~~~~~~~ 51 (243)
|+-..-.++|..|+++..=..+|+.|+.++.+-.+.-+.++
T Consensus 4 ~~~~~~~KlK~~Lklai~Rl~llq~Kk~~~~k~~RrdIA~L 44 (193)
T 3ggy_A 4 SMIPFTIKLKTCLKMCIQRLRYAQEKQQAIAKQSRRQVAQL 44 (193)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455689999999999999999999999988777666555
No 7
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=23.46 E-value=1.6e+02 Score=24.15 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy12149 16 QSLMKSRLKGAQKGHSLLKKKADALQMRFRMILSKII 52 (243)
Q Consensus 16 L~~lk~rl~~a~rG~~LLk~KrdaL~~e~~~~~~~~~ 52 (243)
-.++|..|+++..=..+|+.|+.++.+-.+.-+.++.
T Consensus 10 ~~K~K~~Lklai~Rl~ll~~Kk~~~~k~~RrdIA~LL 46 (191)
T 3frr_A 10 AERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYL 46 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999888776666553
No 8
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.94 E-value=78 Score=19.74 Aligned_cols=23 Identities=9% Similarity=0.299 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhh
Q psy12149 152 QTSFVTLDDVIKITNRRVNAIEH 174 (243)
Q Consensus 152 e~~~~~L~~Ei~kT~RRVNALE~ 174 (243)
=+.+.+++.||.+|...+|-|-+
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqk 30 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKK 30 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888999999888876644
No 9
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=19.59 E-value=1.3e+02 Score=16.94 Aligned_cols=23 Identities=17% Similarity=0.484 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhh
Q psy12149 152 QTSFVTLDDVIKITNRRVNAIEH 174 (243)
Q Consensus 152 e~~~~~L~~Ei~kT~RRVNALE~ 174 (243)
+..+..|..-+.....+..||||
T Consensus 7 ekkcaalesklqalekklealeh 29 (31)
T 3ljm_A 7 EKKCAALESKLQALEKKLEALEH 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444444444455566665
No 10
>3g9r_A Fusion complex of HIV-1 envelope glycoprotein and saccharomyces cerevisiae general...; GP41, MPER, membrane fusion, AIDS; 2.00A {Human immunodeficiency virus 1}
Probab=19.08 E-value=1.4e+02 Score=18.36 Aligned_cols=21 Identities=14% Similarity=0.387 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy12149 146 VELASLQTSFVTLDDVIKITN 166 (243)
Q Consensus 146 i~lA~~e~~~~~L~~Ei~kT~ 166 (243)
++++.+-..+.++++||++..
T Consensus 21 IKI~iMv~~~~~~~~~~~~~~ 41 (42)
T 3g9r_A 21 IKIEELKSKIKRIENEIKRIK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 578888889999999998754
Done!