RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12149
(243 letters)
>d1ji1a1 b.1.18.2 (A:1-122) Maltogenic amylase, N-terminal domain N
{Thermoactinomyces vulgaris, TVAI [TaxId: 2026]}
Length = 122
Score = 28.0 bits (62), Expect = 0.45
Identities = 5/57 (8%), Positives = 16/57 (28%), Gaps = 3/57 (5%)
Query: 88 TKAQIKIRTKKDNVAGVTLPVFESYQDGTDTYELAGLARGGQQLAKLKKNYQTAIKL 144
+K+RT K ++ + + + + + ++ I
Sbjct: 30 QSVTLKLRTFKGDITSANIKY---WDTADNAFHWVPMVWDSNDPTGTFDYWKGTIPA 83
>d2d3ia2 c.94.1.2 (A:335-686) Ovotransferrin {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 352
Score = 28.5 bits (63), Expect = 0.80
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 199 FYRLKKIQDKKKVIKAASEAFRKSRKYDEEQAFNMLEEEDQDILF 243
R +K + +++ + F E+ F M E +++D+LF
Sbjct: 261 VVRPEKANKIRDLLERQEKRF--GVNGSEKSKFMMFESQNKDLLF 303
>g1n13.1 d.155.1.2 (A:,B:) Arginine decarboxylase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 159
Score = 27.8 bits (62), Expect = 0.87
Identities = 9/50 (18%), Positives = 16/50 (32%)
Query: 63 KEAAFSLAEAKFTTGDFNQVVLQNVTKAQIKIRTKKDNVAGVTLPVFESY 112
AF A G+ N + + + + +I G +P Y
Sbjct: 24 PLNAFDGALLNAGIGNVNLIRISXIMPPEAEIVPLPKLPMGALVPTAYGY 73
>d1j0ha1 b.1.18.2 (A:1-123) Neopullulanase, N-terminal domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 123
Score = 26.4 bits (58), Expect = 1.8
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 92 IKIRTKKDNVAGVTLPVFESYQDGTDTYE 120
+++RTKKD++ V L + Y ++
Sbjct: 25 LRLRTKKDDIDRVELLHGDPYDWQNGAWQ 53
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF),
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 25.5 bits (56), Expect = 1.8
Identities = 8/54 (14%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 188 ISELDELEREEFYRLKK-IQDKKKVIKAASEA----FRKSRKYDEEQAFNMLEE 236
+ +L ++E + ++ +QD + + + ++R +D +++ ML +
Sbjct: 5 VGDLSPRQKEALAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRK 58
>d1wzla1 b.1.18.2 (A:1-120) Maltogenic amylase, N-terminal domain N
{Thermoactinomyces vulgaris, TVAII [TaxId: 2026]}
Length = 120
Score = 25.6 bits (56), Expect = 3.2
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 88 TKAQIKIRTKKDNVAGVTLPVFESYQDGTDTYE 120
T+ ++++R KK +V + + Y +
Sbjct: 21 TQLRVRLRAKKGDVVRCEVLYADRYASPEEELA 53
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol
transfer protein sec14p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 25.2 bits (55), Expect = 3.2
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 188 ISELDELEREEFYRLKKIQDKKKVIKAASEA----FRKSRKYDEEQAFNMLEE 236
LD + + L+K+ + I+ ++ F ++RK+D + A M E
Sbjct: 23 PGNLDSAQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFEN 75
>d1ea9c1 b.1.18.2 (C:1-121) Maltogenic amylase, N-terminal domain N
{Bacillus sp., cyclomaltodextrinase [TaxId: 1409]}
Length = 121
Score = 25.6 bits (56), Expect = 3.3
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 92 IKIRTKKDNVAGVTLPVFESY 112
++IRTKKD++ V + Y
Sbjct: 25 LRIRTKKDDMTAVYALAGDKY 45
>d2fsqa1 d.61.1.4 (A:6-237) Putative phosphoesterase Atu0111
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 232
Score = 25.6 bits (56), Expect = 5.1
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 183 TLAYIISELDELEREEFYRLKKIQDKKKVIKAASEAFRK 221
TL+YI+S + + + + +K + A R
Sbjct: 175 TLSYIVSWFEPECLPRWQAMLDEELEKLRVAAPVIQMRP 213
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 25.6 bits (55), Expect = 5.8
Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 10/73 (13%)
Query: 147 ELASLQTSFVTLDDVIKITNRRVNAIEHVIIP-RIEKTLAYIISELDELEREEFYRLKKI 205
E L+ L + K + + + E+ ++ E E E KK+
Sbjct: 225 ERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAFEER----LTNFTEEEAIEE--CKKL 278
Query: 206 QDK---KKVIKAA 215
K K+I
Sbjct: 279 NTKSMLPKIIVTG 291
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 25.5 bits (55), Expect = 7.6
Identities = 19/134 (14%), Positives = 37/134 (27%), Gaps = 22/134 (16%)
Query: 123 GLARGGQQLAKLKKNYQTAIKLLVELASLQTSFVTL-----DDVIKITNRRVNAIEHVII 177
G A L+ YQ + +E A + L + I + +
Sbjct: 25 GPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANPNR 84
Query: 178 PRIEKTLAYIISE-----------------LDELEREEFYRLKKIQDKKKVIKAASEAFR 220
++ L+ + +D R + +L I +K+ A +
Sbjct: 85 SEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQS 144
Query: 221 KSRKYDEEQAFNML 234
S Y + L
Sbjct: 145 SSCSYICQHCLVHL 158
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.346
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 835,057
Number of extensions: 38980
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 23
Length of query: 243
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 160
Effective length of database: 1,268,006
Effective search space: 202880960
Effective search space used: 202880960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)