BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1215
(260 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
pdb|1JQI|B Chain B, Crystal Structure Of Rat Short Chain Acyl-Coa
Dehydrogenase Complexed With Acetoacetyl-Coa
Length = 388
Score = 321 bits (822), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 156/205 (76%), Positives = 178/205 (86%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKG 107
D GAAST A+++ + W LNGTKAWITN +E+ ATVVFA+TD+S+++KGISAF+V PT G
Sbjct: 138 DAGAASTTAREEGDSWVLNGTKAWITNSWEASATVVFASTDRSRQNKGISAFLVPMPTPG 197
Query: 108 LSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALG 167
L+LGKKEDKLGI ASST +LIFEDC IP ENLLGEPGMGFKIAM TLD GRIGIASQALG
Sbjct: 198 LTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPGMGFKIAMQTLDMGRIGIASQALG 257
Query: 168 IAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPF 227
IAQASLDCAV+YA R AFG P+ KLQ+IQ K+ADM+L LESARLLTWRAA LKDNK+PF
Sbjct: 258 IAQASLDCAVKYAENRHAFGAPLTKLQNIQFKLADMALALESARLLTWRAAMLKDNKKPF 317
Query: 228 TKEAAMAKLAASETATYNAHQAIQI 252
TKE+AMAKLAASE AT +HQAIQI
Sbjct: 318 TKESAMAKLAASEAATAISHQAIQI 342
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|B Chain B, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|C Chain C, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|D Chain D, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|E Chain E, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|F Chain F, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|G Chain G, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
pdb|2VIG|H Chain H, Crystal Structure Of Human Short-Chain Acyl Coa
Dehydrogenase
Length = 391
Score = 301 bits (771), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 147/205 (71%), Positives = 169/205 (82%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKG 107
D GAAST A+ + + W LNGTKAWITN +E+ A VVFA+TD++ ++K ISAF+V PT G
Sbjct: 134 DAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKSISAFLVPMPTPG 193
Query: 108 LSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALG 167
L+LGKKEDKLGI SST +LIFEDC IP +++LGEPGMGFKIAM TLD GRIGIASQALG
Sbjct: 194 LTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQALG 253
Query: 168 IAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPF 227
IAQ +LDCAV YA R AFG P+ KLQ IQ K+ADM+L LESARLLTWRAA LKDNK+PF
Sbjct: 254 IAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLLTWRAAMLKDNKKPF 313
Query: 228 TKEAAMAKLAASETATYNAHQAIQI 252
KEAAMAKLAASE AT +HQAIQI
Sbjct: 314 IKEAAMAKLAASEAATAISHQAIQI 338
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 42/52 (80%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAA 52
ML +T RDF E EL PIAA++D+EHL+P Q+KKMG LGL+ ++VPE+LG A
Sbjct: 12 MLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGA 63
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
pdb|1BUC|B Chain B, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase
From Megasphaera Elsdenii
Length = 383
Score = 224 bits (570), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 114/228 (50%), Positives = 158/228 (69%), Gaps = 1/228 (0%)
Query: 26 LYPKEQIKKMGELGLMGVEVPEDLGAASTVAKQDSNG-WTLNGTKAWITNGYESEATVVF 84
L P + K+G GL D T+A ++ +G +TLNG+K +ITNG ++ +VF
Sbjct: 114 LVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVF 173
Query: 85 ATTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPG 144
A TDKSK + GI+AFI++ T G + GKKEDK+GI+ S T L+F+D +PAEN+LGE G
Sbjct: 174 AMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEG 233
Query: 145 MGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMS 204
GFKIAMMTLD GRIG+A+QALGIA+A+L AVEY+ +R FG+P+ K QSI K+ADM
Sbjct: 234 KGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMK 293
Query: 205 LKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYNAHQAIQI 252
+++E+AR L ++AA K +PFT +AA+AK AS+ A +A+QI
Sbjct: 294 MQIEAARNLVYKAACKKQEGKPFTVDAAIAKRVASDVAMRVTTEAVQI 341
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 4 KTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPE 47
K DF E +L P + D + +Y KE I ++ LG+ G E
Sbjct: 14 KLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEE 57
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
pdb|1UKW|B Chain B, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase
From Thermus Thermophilus Hb8
Length = 379
Score = 186 bits (472), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 96/205 (46%), Positives = 132/205 (64%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKG 107
D A T A + + + LNGTK WI+NG E+E VVFAT + +HKG+ A +V++ T G
Sbjct: 132 DAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRHKGVVALVVERGTPG 191
Query: 108 LSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALG 167
K K+G AS T L+FED +P EN LGE G GFKIAM TL+ RI +A+ ++G
Sbjct: 192 FKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLNKTRIPVAAGSVG 251
Query: 168 IAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPF 227
+A+ +LD A +YA +R AFG+PI Q+IQ K+ DM + +E+AR+ T+ AA+L D P
Sbjct: 252 VARRALDEARKYAKEREAFGEPIANFQAIQFKLVDMLIGIETARMYTYYAAWLADQGLPH 311
Query: 228 TKEAAMAKLAASETATYNAHQAIQI 252
+A+AK ASE A A+QAIQI
Sbjct: 312 AHASAIAKAYASEIAFEAANQAIQI 336
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 7 RDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLG 50
R F + + P+A + D + P I+K+ E+GL+ +PE+ G
Sbjct: 17 RRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYG 60
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|B Chain B, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|C Chain C, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
pdb|2JIF|D Chain D, Structure Of Human Short-Branched Chain Acyl-Coa
Dehydrogenase (Acadsb)
Length = 404
Score = 180 bits (457), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 139/224 (62%)
Query: 28 PKEQIKKMGELGLMGVEVPEDLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATT 87
P+ +K+G L D A T A ++ + + LNG+K WI++ + +V A
Sbjct: 136 PQLTTEKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANV 195
Query: 88 DKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGF 147
D + +KGI++F+VD+ T GL +GK E+KLG+ ASSTC L FE+ +P N+LG+ G G+
Sbjct: 196 DPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGY 255
Query: 148 KIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKL 207
K A+ +L+ GRIGIA+Q LG+AQ D + Y +R FG+ + Q +Q ++A ++ +L
Sbjct: 256 KYAIGSLNEGRIGIAAQMLGLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQL 315
Query: 208 ESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYNAHQAIQ 251
E+ARLLT+ AA L + +PF KEA+MAK ASE A + I+
Sbjct: 316 EAARLLTYNAARLLEAGKPFIKEASMAKYYASEIAGQTTSKCIE 359
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGA 51
M+ +V+ F + ++ P+ + +D K I+ + + GLMG+EV + G
Sbjct: 35 MIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGG 85
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|B Chain B, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|C Chain C, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
pdb|3PFD|D Chain D, Crystal Structure Of An Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Reduced Flavin
Adenine Dinucleotide Solved By Combined Iodide Ion Sad
Mr
Length = 393
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/184 (46%), Positives = 113/184 (61%)
Query: 35 MGELGLMGVEVPEDLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHK 94
M L E D + T A D + W LNG+K WITNG +S V A TD K
Sbjct: 133 MASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVMAVTDPDKGAN 192
Query: 95 GISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTL 154
GISAF+V K +G ++G KE KLGI S T L FE+C IP + ++GEPG GFK A+ TL
Sbjct: 193 GISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATL 252
Query: 155 DAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLT 214
D R I +QA+GIAQ +LD A+ Y +R FG+P+ Q +Q +ADM++K+E+ARL+
Sbjct: 253 DHTRPTIGAQAVGIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEAARLMV 312
Query: 215 WRAA 218
+ AA
Sbjct: 313 YSAA 316
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 2 LYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLG 50
L + +R E E+ P AA++D + +P+E + + G + VPE+ G
Sbjct: 26 LREAIRALAEKEIAPYAAEVDEKARFPEEALAALNSSGFSAIHVPEEYG 74
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 167 bits (424), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 108/222 (48%), Positives = 140/222 (63%), Gaps = 7/222 (3%)
Query: 38 LGLMGVEVP---EDLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDK----S 90
LG G+ P D A T A++ GW LNGTK +IT G + VV A TD
Sbjct: 122 LGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPE 181
Query: 91 KKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIA 150
+KH+GISAF +P +GL +G+KE+KLG+ AS T LI ED +P E LLGE G GF
Sbjct: 182 RKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDV 241
Query: 151 MMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESA 210
+ LD GRIGIA+ A+G+ QA+LD A+ YA R AFG+PI + + + K+A+ + +LE+A
Sbjct: 242 LRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAA 301
Query: 211 RLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYNAHQAIQI 252
RLL +AA LKD +PFT EAA AKL ASE A +AIQI
Sbjct: 302 RLLYLKAAELKDAGRPFTLEAAQAKLFASEAAVKACDEAIQI 343
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 7 RDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAAS 53
R+F + E+ P AA+ DR +P + ++K+ E G+ G VPE G A
Sbjct: 19 REFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAG 65
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
pdb|2DVL|B Chain B, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
Length = 372
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 92/230 (40%), Positives = 138/230 (60%), Gaps = 5/230 (2%)
Query: 23 REHLYPKEQIKKMGELGLMGVEVPEDLGAASTVAKQDSNGWTLNGTKAWITNGYESEATV 82
R +L P + + +G L + D + A++ G+ LNG K+WIT+ + V
Sbjct: 106 RRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYV 165
Query: 83 VFATTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGE 142
V A T+K GISAF+V+K T GLS G+ E+K+G++A+ T + E+ +P ENLLGE
Sbjct: 166 VMARTEK-----GISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGE 220
Query: 143 PGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIAD 202
G G A+ LD+GR+G+A+QA+GIA+ + + A YA +R FG+ + + Q+I KIAD
Sbjct: 221 EGRGLAYALAGLDSGRVGVAAQAVGIARGAFEIAKAYAEEREQFGKKLKEHQAIAFKIAD 280
Query: 203 MSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYNAHQAIQI 252
M +K+ +AR L AA KD + FT EA+ AKL AS A +A+Q+
Sbjct: 281 MHVKIAAARALVLEAARKKDRGERFTLEASAAKLFASAAAVEVTREAVQV 330
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAASTVAKQDS 60
++ VR L P+A + DR+ YP Q+K + ELGL+G+ PE+ G DS
Sbjct: 9 LVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGL----DS 64
Query: 61 NGW 63
W
Sbjct: 65 VTW 67
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|B Chain B, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|C Chain C, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
pdb|1IVH|D Chain D, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6
Angstroms Resolution: Structural Basis For Substrate
Specificity
Length = 394
Score = 148 bits (373), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 83/198 (41%), Positives = 111/198 (56%), Gaps = 2/198 (1%)
Query: 56 AKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSK--KHKGISAFIVDKPTKGLSLGKK 113
A++ N + LNG K WITNG +++ +V+A TD + +GI+AFIV+K G S KK
Sbjct: 151 AEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRGITAFIVEKGMPGFSTSKK 210
Query: 114 EDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALGIAQASL 173
DKLG+ S+TC LIFEDC IPA N+LG G + M LD R+ +A LG+ QA L
Sbjct: 211 LDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLDLERLVLAGGPLGLMQAVL 270
Query: 174 DCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAM 233
D + Y R AFGQ I Q +Q K+ADM +L + R + A D K+ A
Sbjct: 271 DHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDCAG 330
Query: 234 AKLAASETATYNAHQAIQ 251
L ++E AT A IQ
Sbjct: 331 VILYSAECATQVALDGIQ 348
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 2 LYKTVRDFTEGELKPIAAKLDREHLYP--KEQIKKMGELGLMGVEVPEDLGAA 52
L +T+ F + L P A ++DR + + +E K++G LG++G+ P G +
Sbjct: 20 LRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 72
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|B Chain B, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|C Chain C, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND.
pdb|1RX0|D Chain D, Crystal Structure Of Isobutyryl-Coa Dehydrogenase
Complexed With SubstrateLIGAND
Length = 393
Score = 140 bits (353), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 84/213 (39%), Positives = 126/213 (59%), Gaps = 2/213 (0%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKG 107
D + T AK+ + + LNG+KA+I+ ES+ VV T KGIS +V+K T G
Sbjct: 146 DAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTGGPGP-KGISCIVVEKGTPG 204
Query: 108 LSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALG 167
LS GKKE K+G N+ T ++IFEDC++P N +G G GF IA+ L+ GRI IAS +LG
Sbjct: 205 LSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNGGRINIASCSLG 264
Query: 168 IAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAY-LKDNKQP 226
A AS+ ++ + R FG+P+ Q +Q +ADM+ +L +ARL+ AA L++ ++
Sbjct: 265 AAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAARLMVRNAAVALQEERKD 324
Query: 227 FTKEAAMAKLAASETATYNAHQAIQIPIITKYL 259
+MAKL A++ +QA+Q+ YL
Sbjct: 325 AVALCSMAKLFATDECFAICNQALQMHGGYGYL 357
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 140 bits (353), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 134/220 (60%), Gaps = 2/220 (0%)
Query: 33 KKMGELGLMGVEVPEDLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKK 92
+++G L + D A A G+ +NG+K+WIT+G +++ +FA T + +
Sbjct: 128 EQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADFYTLFARTGEGSR 187
Query: 93 HKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMM 152
G+S F+V GLS GK E+K+G++A T S +++ I A+ +GE G G +IA
Sbjct: 188 --GVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFS 245
Query: 153 TLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARL 212
LD+GR+GIA+ A G+AQA+LD AV YA++RTAFG+ II Q + +ADM+ + +AR
Sbjct: 246 ALDSGRLGIAAVATGLAQAALDEAVAYANERTAFGRKIIDHQGLGFLLADMAAAVATARA 305
Query: 213 LTWRAAYLKDNKQPFTKEAAMAKLAASETATYNAHQAIQI 252
AA +D +P++++A++AKL A++ A A+Q+
Sbjct: 306 TYLDAARRRDQGRPYSQQASIAKLTATDAAMKVTTDAVQV 345
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 133/233 (57%), Gaps = 9/233 (3%)
Query: 29 KEQIKKMGELGLMGVEVPEDLGAASTVA------KQDSNGWTLNGTKAWITNGYESEATV 82
K+ + +M E LM + GA S VA ++ + + +NG K WITNG ++
Sbjct: 118 KKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYF 177
Query: 83 VFATTD---KSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENL 139
+ A +D K+ K + FIV+ T G+ +G+KE +G S T ++FED +P EN+
Sbjct: 178 LLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENV 237
Query: 140 LGEPGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQK 199
L G GFKIAM T D R +A+ A+G+AQ +LD A +YA +R FG+ + + Q I
Sbjct: 238 LTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFL 297
Query: 200 IADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYNAHQAIQI 252
+ADM++K+E ARL RAA+ D+ + T A++AK A++ A A A+Q+
Sbjct: 298 LADMAMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQV 350
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 5 TVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGA 51
T R F E+ P+AA+ DR YP +K+ ELGLM +PE G
Sbjct: 26 TARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFGG 72
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 137 bits (346), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 133/233 (57%), Gaps = 9/233 (3%)
Query: 29 KEQIKKMGELGLMGVEVPEDLGAASTVA------KQDSNGWTLNGTKAWITNGYESEATV 82
K+ + +M E LM + GA S VA ++ + + +NG K WITNG ++
Sbjct: 108 KKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYF 167
Query: 83 VFATTD---KSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENL 139
+ A +D K+ K + FIV+ T G+ +G+KE +G S T ++FED +P EN+
Sbjct: 168 LLARSDPDPKAPASKAFTGFIVEADTPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENV 227
Query: 140 LGEPGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQK 199
L G GFKIAM T D R +A+ A+G+AQ +LD A +YA +R FG+ + + Q I
Sbjct: 228 LTGEGAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFL 287
Query: 200 IADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYNAHQAIQI 252
+ADM++K+E ARL RAA+ D+ + T A++AK A++ A A A+Q+
Sbjct: 288 LADMAMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQV 340
Score = 44.3 bits (103), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 5 TVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGA 51
T R F E+ P+AA+ DR YP +K+ ELGLM +PE G
Sbjct: 16 TARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPESFGG 62
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 142/250 (56%), Gaps = 12/250 (4%)
Query: 12 GELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAASTVA------KQDSNGWTL 65
G++ I A D++ K+ + +M E LM + GA S VA ++ + + +
Sbjct: 129 GQMPIIIAGNDQQK---KKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYII 185
Query: 66 NGTKAWITNGYESEATVVFATTD---KSKKHKGISAFIVDKPTKGLSLGKKEDKLGINAS 122
NG K WITNG ++ + A +D K+ +K + FIV+ T G+ +G+KE +G S
Sbjct: 186 NGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCS 245
Query: 123 STCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASK 182
T ++FED +P EN+L G GFK+AM D R +A+ A+G+AQ +LD A +YA +
Sbjct: 246 DTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGLAQRALDEATKYALE 305
Query: 183 RTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETA 242
R FG+ +++ Q+I +A+M++K+E AR+ RAA+ D+ + T A++AK A + A
Sbjct: 306 RKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIA 365
Query: 243 TYNAHQAIQI 252
A A+QI
Sbjct: 366 NQLATDAVQI 375
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 5 TVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGA-------ASTVAK 57
T R F E+ P+AA+ D+ YP I++ ELGLM +PE+ G A +++
Sbjct: 51 TARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLGTFDACLISE 110
Query: 58 QDSNGWTLNGTKAWITNGYESEATVVFATTDKSKK 92
+ + G T G + I + ++ A D+ KK
Sbjct: 111 ELAYGCT--GVQTAIEGNSLGQMPIIIAGNDQQKK 143
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 142/250 (56%), Gaps = 12/250 (4%)
Query: 12 GELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAASTVA------KQDSNGWTL 65
G++ I A D++ K+ + +M E LM + GA S VA ++ + + +
Sbjct: 104 GQMPIIIAGNDQQK---KKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYII 160
Query: 66 NGTKAWITNGYESEATVVFATTD---KSKKHKGISAFIVDKPTKGLSLGKKEDKLGINAS 122
NG K WITNG ++ + A +D K+ +K + FIV+ T G+ +G+KE +G S
Sbjct: 161 NGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCS 220
Query: 123 STCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASK 182
T ++FED +P EN+L G GFK+AM D R +A+ A+G+AQ +LD A +YA +
Sbjct: 221 DTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKTRPVVAAGAVGLAQRALDEATKYALE 280
Query: 183 RTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETA 242
R FG+ +++ Q+I +A+M++K+E AR+ RAA+ D+ + T A++AK A + A
Sbjct: 281 RKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIA 340
Query: 243 TYNAHQAIQI 252
A A+QI
Sbjct: 341 NQLATDAVQI 350
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 5 TVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGA-------ASTVAK 57
T R F E+ P+AA+ D+ YP I++ ELGLM +PE+ G A +++
Sbjct: 26 TARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLGTFDACLISE 85
Query: 58 QDSNGWTLNGTKAWITNGYESEATVVFATTDKSKK 92
+ + G T G + I + ++ A D+ KK
Sbjct: 86 ELAYGCT--GVQTAIEGNSLGQMPIIIAGNDQQKK 118
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 142/250 (56%), Gaps = 12/250 (4%)
Query: 12 GELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAASTVA------KQDSNGWTL 65
G++ I A D++ K+ + +M E LM + GA S VA ++ + + +
Sbjct: 104 GQMPIIIAGNDQQK---KKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYII 160
Query: 66 NGTKAWITNGYESEATVVFATTD---KSKKHKGISAFIVDKPTKGLSLGKKEDKLGINAS 122
NG K WITNG ++ + A +D K+ +K + FIV+ T G+ +G+KE +G S
Sbjct: 161 NGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCS 220
Query: 123 STCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASK 182
T ++FED +P EN+L G GFK+AM D R +A+ A+G+AQ +LD A +YA +
Sbjct: 221 DTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKERPVVAAGAVGLAQRALDEATKYALE 280
Query: 183 RTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETA 242
R FG+ +++ Q+I +A+M++K+E AR+ RAA+ D+ + T A++AK A + A
Sbjct: 281 RKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIA 340
Query: 243 TYNAHQAIQI 252
A A+QI
Sbjct: 341 NQLATDAVQI 350
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 5 TVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGA-------ASTVAK 57
T R F E+ P+AA+ D+ YP I++ ELGLM +PE+ G A +++
Sbjct: 26 TARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLGTFDACLISE 85
Query: 58 QDSNGWTLNGTKAWITNGYESEATVVFATTDKSKK 92
+ + G T G + I + ++ A D+ KK
Sbjct: 86 ELAYGCT--GVQTAIEGNSLGQMPIIIAGNDQQKK 118
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase
pdb|2Z1Q|B Chain B, Crystal Structure Of Acyl Coa Dehydrogenase
Length = 577
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 114/209 (54%), Gaps = 18/209 (8%)
Query: 58 QDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKGLSLGKKEDKL 117
+D + LNG K WI+N + VFA D +AF+V++ T GLS G +E K+
Sbjct: 168 EDGKHYILNGVKQWISNAGFAHLFTVFAKVDGEH----FTAFLVERDTPGLSFGPEEKKM 223
Query: 118 GINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAV 177
GI ASST +I ED +P EN+LGE G G KIA L+ GR + + A+G A+ +L+ +
Sbjct: 224 GIKASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLNVGRYKLGAGAVGGAKRALELSA 283
Query: 178 EYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDN-----KQP------ 226
+YA++R FG+PI + IQQK+ +M+ ++ +A +R L D K P
Sbjct: 284 QYATQRVQFGRPIGRFGLIQQKLGEMASRIYAAESAVYRTVGLIDEALLGKKGPEAVMAG 343
Query: 227 ---FTKEAAMAKLAASETATYNAHQAIQI 252
+ EA++ K+ SE Y + +QI
Sbjct: 344 IEEYAVEASIIKVLGSEVLDYVVDEGVQI 372
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|C Chain C, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPI|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Glutaryl-Coa Complex
pdb|3MPJ|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|B Chain B, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|D Chain D, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|E Chain E, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|F Chain F, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
pdb|3MPJ|G Chain G, Structure Of The Glutaryl-Coenzyme A Dehydrogenase
Length = 397
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 82/220 (37%), Positives = 134/220 (60%), Gaps = 6/220 (2%)
Query: 38 LGLMGVEVPE---DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHK 94
LG G+ P+ D+ A S+ A+ + W LNG+K WI+N +++ + +A TDK+ +
Sbjct: 123 LGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAYTDKAAGSR 182
Query: 95 GISAFIVD-KPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMT 153
G+SAF+++ + G+ E KLG +AS T L ++ +P EN+LG+PG G +I +
Sbjct: 183 GLSAFVIEPRNFPGIKTSNLE-KLGSHASPTGELFLDNVKVPKENILGKPGDGARIVFGS 241
Query: 154 LDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLL 213
L+ R+ A+ +G+AQA LD A++Y ++R FG+PI Q Q IA M++++E+ARLL
Sbjct: 242 LNHTRLSAAAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMNQDMIAQMAVEVEAARLL 301
Query: 214 TWRAAYLKDNKQPFTK-EAAMAKLAASETATYNAHQAIQI 252
++AA KD + + AMAK AA E + A+ A++I
Sbjct: 302 AYKAAAAKDEGRLNNGLDVAMAKYAAGEAVSKCANYAMRI 341
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQ-IKKMGELGLMGVEVPEDLGA 51
ML K VR+F ++ P A + D E+ +P E+ ++ MGELG G +PE+ G
Sbjct: 11 MLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGG 62
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
pdb|2PG0|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Geobacillus Kaustophilus
Length = 385
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 2/207 (0%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKK--HKGISAFIVDKPT 105
DL ST A +D + + +NG K +ITNG ++ VV TD K H+GIS +V++ T
Sbjct: 137 DLANISTTAVKDGDYYIVNGQKTFITNGIHADLIVVACKTDPQAKPPHRGISLLVVERDT 196
Query: 106 KGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQA 165
G + G+K +K+G++A T L F+D +PA NLLGE G GF M L R+ +A A
Sbjct: 197 PGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYLMEKLQQERLVVAIAA 256
Query: 166 LGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQ 225
A+ +Y +RTAFG+ + + Q++Q ++A+M+ ++ R R +
Sbjct: 257 QTAAEVMFSLTKQYVKQRTAFGKRVSEFQTVQFRLAEMATEIALGRTFVDRVIEEHMAGK 316
Query: 226 PFTKEAAMAKLAASETATYNAHQAIQI 252
E +MAK +E A A +A+Q+
Sbjct: 317 QIVTEVSMAKWWITEMAKRVAAEAMQL 343
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa
Dehydrogenase (acadvl)
Length = 607
Score = 123 bits (309), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 112/196 (57%), Gaps = 6/196 (3%)
Query: 63 WTLNGTKAWITNGYESEATVVFATTDKSKKHKG-----ISAFIVDKPTKGLSLGKKEDKL 117
+TLNG+K WI+NG ++ VFA T + G I+AF+V++ G++ G E K+
Sbjct: 193 YTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKM 252
Query: 118 GINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAV 177
GI AS+T + F+ +P+EN+LGE G GFK+AM L+ GR G+A+ G + + AV
Sbjct: 253 GIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAV 312
Query: 178 EYASKRTAFGQPIIKLQSIQQKIADMS-LKLESARLLTWRAAYLKDNKQPFTKEAAMAKL 236
++A+ RT FG+ I IQ+K+A M L+ + + +A + F EAA++K+
Sbjct: 313 DHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKI 372
Query: 237 AASETATYNAHQAIQI 252
SE A + IQI
Sbjct: 373 FGSEAAWKVTDECIQI 388
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain
Specificity: Crystal Structure Of Human Very-Long-Chain
Acyl-Coa Dehydrogenase
Length = 587
Score = 123 bits (309), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 72/196 (36%), Positives = 112/196 (57%), Gaps = 6/196 (3%)
Query: 63 WTLNGTKAWITNGYESEATVVFATTDKSKKHKG-----ISAFIVDKPTKGLSLGKKEDKL 117
+TLNG+K WI+NG ++ VFA T + G I+AF+V++ G++ G E K+
Sbjct: 173 YTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKM 232
Query: 118 GINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAV 177
GI AS+T + F+ +P+EN+LGE G GFK+AM L+ GR G+A+ G + + AV
Sbjct: 233 GIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAV 292
Query: 178 EYASKRTAFGQPIIKLQSIQQKIADMS-LKLESARLLTWRAAYLKDNKQPFTKEAAMAKL 236
++A+ RT FG+ I IQ+K+A M L+ + + +A + F EAA++K+
Sbjct: 293 DHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKI 352
Query: 237 AASETATYNAHQAIQI 252
SE A + IQI
Sbjct: 353 FGSEAAWKVTDECIQI 368
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3OIB|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis, Iodide Soak
pdb|3P4T|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
pdb|3P4T|B Chain B, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase
From Mycobacterium Smegmatis
Length = 403
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 117/234 (50%), Gaps = 2/234 (0%)
Query: 20 KLDREHLYPKEQIKKMGELGLMGVEVPEDLGAASTVAKQDSNGWTLNGTKAWITNGYESE 79
+L ++ P + +K+G L + D+G T A D + + +NG K +IT+G ++
Sbjct: 127 RLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRAD 186
Query: 80 ATVVFATTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENL 139
V A T G+S +VDK T G + +K DK+G +S T L + D +P NL
Sbjct: 187 YVVTAARTGGPGA-GGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANL 245
Query: 140 LGEPGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQK 199
+G GF A R+G+A+QA AQ LD VE+ R FG+P+I Q++Q
Sbjct: 246 VGSENTGFAQIAAAFVAERVGLATQAYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNT 305
Query: 200 IADMSLKLESARLLTWRAAYLK-DNKQPFTKEAAMAKLAASETATYNAHQAIQI 252
+A M+ +++ AR+ T + + E AK A E + A+QA+Q+
Sbjct: 306 LAGMARRIDVARVYTRHVVERQLAGETNLIAEVCFAKNTAVEAGEWVANQAVQL 359
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 2 LYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPE 47
L KTVR F E E+ P A + +R P+E +K ELGL+G PE
Sbjct: 33 LRKTVRAFAEREVLPHAHEWERAGEIPRELHRKAAELGLLGAGFPE 78
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
pdb|3OWA|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With
Fad From Bacillus Anthracis
Length = 597
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/226 (33%), Positives = 113/226 (50%), Gaps = 25/226 (11%)
Query: 48 DLGAASTVAKQDSNG--WTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPT 105
D A T A+ ++ G + LNG K WITN ++ +V+A D SAFIV+K
Sbjct: 161 DALGAKTTARLNAEGTHYVLNGEKQWITNSAFADVFIVYAKIDGEH----FSAFIVEKDY 216
Query: 106 KGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQA 165
G+S +E K GI SST +LI ED +P ENLLGE G G IA L+ GR +
Sbjct: 217 AGVSTSPEEKKXGIKCSSTRTLILEDALVPKENLLGEIGKGHIIAFNILNIGRYKLGVGT 276
Query: 166 LGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYL----- 220
+G A+ +++ + +YA++R F QPI + IQ+K+A+ + K +A +R L
Sbjct: 277 VGSAKRAVEISAQYANQRQQFKQPIARFPLIQEKLANXAAKTYAAESSVYRTVGLFESRX 336
Query: 221 --------KDNK------QPFTKEAAMAKLAASETATYNAHQAIQI 252
KD K + E ++ K+ SE Y + +QI
Sbjct: 337 STLSEEEVKDGKAVAASIAEYAIECSLNKVFGSEVLDYTVDEGVQI 382
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 125/251 (49%), Gaps = 10/251 (3%)
Query: 9 FTEGELKP-IAAK----LDREHLYPKEQIKKMGELGLMGVEVPEDLGAASTVAKQDSNGW 63
FT G P IAA L ++ P K +G LG+ D+ T A ++ + +
Sbjct: 114 FTHGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTY 173
Query: 64 TLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASS 123
+NG K +IT+G ++ V A + G+S ++DK + G + ++ DK+G S
Sbjct: 174 VVNGAKTFITSGVRAD-FVTTAVRTGGPGYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSD 232
Query: 124 TCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKR 183
T L F D +PA+NL+G GF M A R+GIA QA A +LD A +A +R
Sbjct: 233 TAELSFVDVRVPADNLVGAENSGFLQIMQQFQAERLGIAVQAYATAGRALDLAKSWARER 292
Query: 184 TAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKD--NKQPFTKEAAMAKLAASET 241
FG+P+ Q I+ K+A+M+ +++ A T+ A ++ + E +MAK A
Sbjct: 293 ETFGRPLTGRQIIRHKLAEMARQVDVA--CTYTRAVMQRWLAGEDVVAEVSMAKNTAVYA 350
Query: 242 ATYNAHQAIQI 252
Y ++A+QI
Sbjct: 351 CDYVVNEAVQI 361
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 2 LYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAA 52
L + R F E E+ P A+ + P++ E+GL+G+ PE++G +
Sbjct: 36 LSQMARSFVEREIAPKLAEWEHVGEIPRDLHLNAAEVGLLGIGFPEEVGGS 86
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|B Chain B, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|C Chain C, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
pdb|3SWO|D Chain D, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis In Complex With Fadh2
Length = 399
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 109/227 (48%), Gaps = 18/227 (7%)
Query: 38 LGLMGVEVPEDLGA----ASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKH 93
+G G+ P D G+ T A++D + W LNGTK WITNG ++ V+A TD
Sbjct: 140 IGCFGLTEP-DFGSNPAGMRTRARRDGSDWILNGTKMWITNGNLADVATVWAQTDD---- 194
Query: 94 KGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMT 153
GI F+V T G + + KL + AS T L+ ++ +PA L G +
Sbjct: 195 -GIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQL-PLAEGLSAPLSC 252
Query: 154 LDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLL 213
L+ R GI ALG A+ SL+ + Y R F +P+ Q Q+K+A+M+++L LL
Sbjct: 253 LNEARFGIVFGALGAARDSLETTIAYTQSREVFDKPLSNYQLTQEKLANMTVELGKGMLL 312
Query: 214 TWRAAYLKDNKQPFTKEAAMAKLAASETATYNAHQAIQIPIITKYLL 260
+KD + ++ ++ KL N +AI I + LL
Sbjct: 313 AIHLGRIKDAEGVRPEQISLGKLN-------NVREAIAIARECRTLL 352
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 5 TVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAASTVA 56
TVR F + LKP P E K+ G LG++G+ + + G A T A
Sbjct: 36 TVRQFVDTRLKPNVEGWFESATLPSELAKEFGNLGVLGMHL-QGYGCAGTNA 86
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Mycobacterium Smegmatis
Length = 403
Score = 100 bits (250), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 108/229 (47%), Gaps = 15/229 (6%)
Query: 33 KKMGELGLMGVEVPEDLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKK 92
++G GL + D T A + + W L GTK WITNG ++ VV+A TD+
Sbjct: 143 HRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGSVADVAVVWARTDE--- 199
Query: 93 HKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIP-AENLLGEPGMGFKIAM 151
GI F+V T G + + K+ + AS T L+ + +P + L G +G +
Sbjct: 200 --GIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARLPGATSLG--APL 255
Query: 152 MTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESAR 211
L+ R GI ALG A+ L+ A+ YA R F +PI Q QQK+ADM+L+
Sbjct: 256 RCLNEARFGIVFGALGAARDCLETALAYACSREQFDRPIGGFQLTQQKLADMTLEYGKGF 315
Query: 212 LLTWRAAYLKDNKQPFTKEAAMAKLAASETATYNAHQAIQIPIITKYLL 260
LL KD + ++ ++ KL N +AI+I + +L
Sbjct: 316 LLALHLGRQKDAGELAPEQVSLGKL-------NNVREAIEIARTARTVL 357
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|B Chain B, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|C Chain C, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
pdb|3D6B|D Chain D, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei
Length = 395
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 102/189 (53%), Gaps = 7/189 (3%)
Query: 38 LGLMGVEVPE---DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHK 94
+G G+ P D G+ T A++ G++L+G+K WITN ++ VV+A D+ + +
Sbjct: 133 IGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDGRDE 192
Query: 95 GISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGM-GFKIAMMT 153
I FI++K KGLS K+G+ AS T ++ ++ +P EN+L P + G +
Sbjct: 193 -IRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENIL--PHVKGLRGPFTC 249
Query: 154 LDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLL 213
L++ R GIA ALG A++ A +Y R FG+P+ Q IQ+K+ADM ++
Sbjct: 250 LNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEITLGLQG 309
Query: 214 TWRAAYLKD 222
R +KD
Sbjct: 310 VLRLGRMKD 318
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 4 KTVRD----FTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGA 51
+ VRD + +G+L P + R ++MGE+GL+G +PE G
Sbjct: 23 RMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYGG 74
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|B Chain B, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|C Chain C, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EOM|D Chain D, 2.4 A Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei
pdb|3EON|A Chain A, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|B Chain B, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|C Chain C, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3EON|D Chain D, 2.55a Crystal Structure Of Native Glutaryl-Coa
Dehydrogenase From Burkholderia Pseudomallei In Complex
With A Small Molecule
pdb|3II9|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
pdb|3II9|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei At 1.73 Angstrom
Length = 396
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 102/189 (53%), Gaps = 7/189 (3%)
Query: 38 LGLMGVEVPE---DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHK 94
+G G+ P D G+ T A++ G++L+G+K WITN ++ VV+A D+ + +
Sbjct: 134 IGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDGRDE 193
Query: 95 GISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGM-GFKIAMMT 153
I FI++K KGLS K+G+ AS T ++ ++ +P EN+L P + G +
Sbjct: 194 -IRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENIL--PHVKGLRGPFTC 250
Query: 154 LDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLL 213
L++ R GIA ALG A++ A +Y R FG+P+ Q IQ+K+ADM ++
Sbjct: 251 LNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEITLGLQG 310
Query: 214 TWRAAYLKD 222
R +KD
Sbjct: 311 VLRLGRMKD 319
Score = 31.6 bits (70), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 4 KTVRD----FTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGA 51
+ VRD + +G+L P + R ++MGE+GL+G +PE G
Sbjct: 24 RMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYGG 75
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GQT|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment
(1,4-Dimethyl-1,2,3,4-
Tetrahydroquinoxalin-6-Yl)methylamine
pdb|3GNC|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|B Chain B, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|C Chain C, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
pdb|3GNC|D Chain D, Crystal Structure Of Glutaryl-Coa Dehydrogenase From
Burkholderia Pseudomallei With Fragment 6421
Length = 399
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 102/189 (53%), Gaps = 7/189 (3%)
Query: 38 LGLMGVEVPE---DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHK 94
+G G+ P D G+ T A++ G++L+G+K WITN ++ VV+A D+ + +
Sbjct: 137 IGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDEDGRDE 196
Query: 95 GISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGM-GFKIAMMT 153
I FI++K KGLS K+G+ AS T ++ ++ +P EN+L P + G +
Sbjct: 197 -IRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENIL--PHVKGLRGPFTC 253
Query: 154 LDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLL 213
L++ R GIA ALG A++ A +Y R FG+P+ Q IQ+K+ADM ++
Sbjct: 254 LNSARYGIAWGALGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEITLGLQG 313
Query: 214 TWRAAYLKD 222
R +KD
Sbjct: 314 VLRLGRMKD 322
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 4 KTVRD----FTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGA 51
+ VRD + +G+L P + R ++MGE+GL+G +PE G
Sbjct: 27 RMVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYGG 78
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|C Chain C, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|D Chain D, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|E Chain E, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|F Chain F, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|G Chain G, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|H Chain H, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
pdb|2EBA|I Chain I, Crystal Structure Of The Putative Glutaryl-coa
Dehydrogenase From Thermus Thermophilus
Length = 385
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 89/170 (52%), Gaps = 9/170 (5%)
Query: 38 LGLMGVEVPED----LGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKH 93
+G G+ P+ G T A+++ + W LNGTK WITNG + V++A + +
Sbjct: 126 VGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAHLAVIWAKDEGGE-- 183
Query: 94 KGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMT 153
+ F+V T G + + K+ + AS T L+ E+ +P E+L +G K +
Sbjct: 184 --VLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVP-ESLRLPKALGLKAPLSC 240
Query: 154 LDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADM 203
L R GIA A+G +A + AV +A R+ FG+P+ K Q +Q K+A+M
Sbjct: 241 LTQARFGIAWGAMGALEAVYEEAVAFAKSRSTFGEPLAKKQLVQAKLAEM 290
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 4 KTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAAST 54
K R F E E P E ++P I + ELG +G +P + G A
Sbjct: 20 KAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLPPEYGGAGV 70
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
pdb|2R0N|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 93/179 (51%), Gaps = 12/179 (6%)
Query: 31 QIKKMGELGLMGVEVPE---DLGAASTVAKQDSNG--WTLNGTKAWITNGYESEATVVFA 85
Q+ K LG G+ P D + T A +S+ +TLNGTK WITN ++ VV+A
Sbjct: 123 QLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWA 182
Query: 86 TTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLL-GEPG 144
+ I F+++K +GLS + + K + AS+T +I + +P EN+L G
Sbjct: 183 RCEDGC----IRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASS 238
Query: 145 MGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADM 203
+G L+ R GIA LG ++ L A +YA R FG P+ + Q IQ+K+ADM
Sbjct: 239 LGGPFG--CLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADM 295
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMG 42
++ T R + + L P +R ++ +E I +MGELG++G
Sbjct: 22 LIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLG 63
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa
Dehydrogenase
Length = 392
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 93/179 (51%), Gaps = 12/179 (6%)
Query: 31 QIKKMGELGLMGVEVPE---DLGAASTVAKQDSNG--WTLNGTKAWITNGYESEATVVFA 85
Q+ K LG G+ P D + T A +S+ +TLNGTK WITN ++ VV+A
Sbjct: 121 QLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWA 180
Query: 86 TTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLL-GEPG 144
+ I F+++K +GLS + + K + AS+T +I + +P EN+L G
Sbjct: 181 RCEDGC----IRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASS 236
Query: 145 MGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADM 203
+G L+ R GIA LG ++ L A +YA R FG P+ + Q IQ+K+ADM
Sbjct: 237 LGGPFG--CLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADM 293
Score = 31.2 bits (69), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMG 42
++ T R + + L P +R ++ +E I +MGELG++G
Sbjct: 20 LIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLG 61
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa
Dehydrogenase On Proton Transfer To The Dienolate
Intermediate
Length = 394
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 93/179 (51%), Gaps = 12/179 (6%)
Query: 31 QIKKMGELGLMGVEVPE---DLGAASTVAKQDSNG--WTLNGTKAWITNGYESEATVVFA 85
Q+ K LG G+ P D + T A +S+ +TLNGTK WITN ++ VV+A
Sbjct: 123 QLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWA 182
Query: 86 TTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLL-GEPG 144
+ I F+++K +GLS + + K + AS+T +I + +P EN+L G
Sbjct: 183 RCEDGC----IRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASS 238
Query: 145 MGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADM 203
+G L+ R GIA LG ++ L A +YA R FG P+ + Q IQ+K+ADM
Sbjct: 239 LGGPFG--CLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADM 295
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMG 42
++ T R + + L P +R ++ +E I +MGELG++G
Sbjct: 22 LIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLG 63
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
pdb|2IX5|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4 In Complex With Acetoacetyl-Coa
Length = 436
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 90/196 (45%), Gaps = 6/196 (3%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKG 107
D T A + GW +NG K WI N ++ ++FA + + I+ FIV K G
Sbjct: 182 DASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQ---INGFIVKKDAPG 238
Query: 108 LSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMG-FKIAMMTLDAGRIGIASQAL 166
L K +K+G+ ++ ++ +P E+ L PG+ F+ L R+ +A Q +
Sbjct: 239 LKATKIPNKIGLRMVQNGDILLQNVFVPDEDRL--PGVNSFQDTSKVLAVSRVMVAWQPI 296
Query: 167 GIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQP 226
GI+ D Y +R FG P+ Q QQK+ M +++ L+ WR L + Q
Sbjct: 297 GISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQM 356
Query: 227 FTKEAAMAKLAASETA 242
+A++ K S A
Sbjct: 357 TPGQASLGKAWISSKA 372
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|B Chain B, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|C Chain C, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|D Chain D, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|E Chain E, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
pdb|2IX6|F Chain F, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis
Thaliana, Acx4
Length = 449
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 90/196 (45%), Gaps = 6/196 (3%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKG 107
D T A + GW +NG K WI N ++ ++FA + + I+ FIV K G
Sbjct: 182 DASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFARNTTTNQ---INGFIVKKDAPG 238
Query: 108 LSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMG-FKIAMMTLDAGRIGIASQAL 166
L K +K+G+ ++ ++ +P E+ L PG+ F+ L R+ +A Q +
Sbjct: 239 LKATKIPNKIGLRMVQNGDILLQNVFVPDEDRL--PGVNSFQDTSKVLAVSRVMVAWQPI 296
Query: 167 GIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQP 226
GI+ D Y +R FG P+ Q QQK+ M +++ L+ WR L + Q
Sbjct: 297 GISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQM 356
Query: 227 FTKEAAMAKLAASETA 242
+A++ K S A
Sbjct: 357 TPGQASLGKAWISSKA 372
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From
Mycobacterium Abscessus
Length = 415
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 102/209 (48%), Gaps = 9/209 (4%)
Query: 51 AASTVAKQDSNGWTLNGTKAWITN-GYESEATVVFA--TTDKSKKHKGISAFIVDKPTKG 107
AA+ V + D +NG K W T G+ ++F T + ++ S +V T G
Sbjct: 162 AATAVVEGDEV--VINGRKWWSTGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPG 219
Query: 108 LSLGKKEDKLGI--NASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQA 165
+++ + +G + F++ +PA+ + PG GF+IA L GR+ A +
Sbjct: 220 ITVERMLPTMGFYDEPGGHGVVSFDNVRLPADAFIAGPGKGFEIAQGRLGPGRVHHAMRL 279
Query: 166 LGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQ 225
+G+A+ +L+ A RTAFG+P++ L +++IAD + + RLL AA+L D
Sbjct: 280 IGLAEVALEHACRRGLDRTAFGKPLVNLGGNRERIADARIAINQTRLLVLHAAWLLDTVG 339
Query: 226 PFTKEAAMA--KLAASETATYNAHQAIQI 252
+A++ K+AA A AIQI
Sbjct: 340 IMGALSAVSEIKVAAPNMAQQVIDMAIQI 368
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
pdb|2WBI|B Chain B, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
Length = 428
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 94/205 (45%), Gaps = 9/205 (4%)
Query: 57 KQDSNGWTLNGTKAWITNGYESEA--TVVFATTDKSK--KHKGISAFIVDKPTKGLSLGK 112
++D + + +NG K W + + +V T + +HK S +V T G+ + +
Sbjct: 172 QRDEDSYVINGKKWWSSGAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIR 231
Query: 113 KEDKLGINAS---STCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALGIA 169
G + + F +PA NL+ G GF+I+ L GRI + +G+A
Sbjct: 232 PLSVFGYTDNFHGGHFEIHFNQVRVPATNLILGEGRGFEISQGRLGPGRIHHCMRTVGLA 291
Query: 170 QASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDN--KQPF 227
+ +L E A++R AF + + + + IA+ + +E RLLT +AA+ D
Sbjct: 292 ERALQIMCERATQRIAFKKKLYAHEVVAHWIAESRIAIEKIRLLTLKAAHSMDTLGSAGA 351
Query: 228 TKEAAMAKLAASETATYNAHQAIQI 252
KE AM K+AA + AIQ+
Sbjct: 352 KKEIAMIKVAAPRAVSKIVDWAIQV 376
>pdb|3DJL|A Chain A, Crystal Structure Of Alkylation Response Protein E. Coli
Aidb
pdb|3U33|A Chain A, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|B Chain B, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|C Chain C, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|D Chain D, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|E Chain E, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|F Chain F, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|G Chain G, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|H Chain H, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|I Chain I, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|J Chain J, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|K Chain K, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
pdb|3U33|L Chain L, Crystal Structure Of The E. Coli Adaptive Response Protein
Aidb In The Space Group P3(2)
Length = 541
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/242 (25%), Positives = 114/242 (47%), Gaps = 19/242 (7%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPE-----DLGAASTV 55
ML +D+T P+ + HL P Q + + L+G+ + E D+ + +T
Sbjct: 148 MLPAPFQDWT----TPLLSDRYDSHLLPGGQKRGL----LIGMGMTEKQGGSDVMSNTTR 199
Query: 56 AKQDSNG-WTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKGLSLGKKE 114
A++ +G + L G K W + +S+A +V A T + F+ D + L + +
Sbjct: 200 AERLEDGSYRLVGHK-WFFSVPQSDAHLVLAQTAGGLSCFFVPRFLPDGQRNAIRLERLK 258
Query: 115 DKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALGIAQASLD 174
DKLG ++++C + F+D LLG G G ++ + R A + + + +
Sbjct: 259 DKLGNRSNASCEVEFQDA---IGWLLGLEGEGIRLILKMGGMTRFDCALGSHAMMRRAFS 315
Query: 175 CAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMA 234
A+ +A +R FG P+I+ ++ ++ M+L+LE L +R A D + KEA A
Sbjct: 316 LAIYHAHQRHVFGNPLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDRRAD-AKEALWA 374
Query: 235 KL 236
+L
Sbjct: 375 RL 376
>pdb|3M9V|A Chain A, X-Ray Structure Of A Kijd3 In Complex With Dtdp
Length = 439
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 6/137 (4%)
Query: 51 AASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKGLSL 110
A +T+ + GW L+G K ++ V+ A TD + +++ +V + T G ++
Sbjct: 151 AVTTLRPDGAGGWLLSGRKTLVSMAPVGTHFVINARTDGTDGPPRLASPVVTRDTPGFTV 210
Query: 111 GKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFK----IAMMTLDAGRIGIASQAL 166
D LG+ AS T ++F+DC IPA+++L +G + +A T+ + + + +
Sbjct: 211 LDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGARNDAVLAGQTVSS--VSVLGVYV 268
Query: 167 GIAQASLDCAVEYASKR 183
G+AQA+ D AV +R
Sbjct: 269 GVAQAAYDTAVAALERR 285
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 13 ELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLG 50
++ AA+ DR+ +P + + + GLMG VP +LG
Sbjct: 37 RIRSTAAEHDRDGTFPTDTFDALRKDGLMGATVPAELG 74
>pdb|2REH|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 110/239 (46%), Gaps = 41/239 (17%)
Query: 4 KTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAASTVAKQDSNGW 63
K ++ F GE +P+A+ + E ++K G GL T A++ N W
Sbjct: 115 KFLKPFISGEGEPLASLMHSEPNGTANWLQKGGP-GL------------QTTARKVGNEW 161
Query: 64 TLNGTKAWITN--GYESE----ATVVFATTDKSKKHKG--------ISAFIVDKPTKGLS 109
++G K W +N G++ + A VV +D K + I+ +V + T +
Sbjct: 162 VISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANN 221
Query: 110 -------LGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGM---GFKIAMMTLDAGRI 159
LG+ E I S + F + +P ENLL PG+ G + A +
Sbjct: 222 KKDAYQILGEPELAGHITTSGPHTR-FTEFHVPHENLLCTPGLKAQGLVETAFAMSAALV 280
Query: 160 GIASQALGIAQASLDCAVEYASKRTAFG-QPIIKLQSIQQKIADMSLKLESARLLTWRA 217
G + A+G A+A+ + A+ +A T G + II+ QS+ K+ D ++LE++RLL W+A
Sbjct: 281 G--AMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKA 337
>pdb|3D9G|A Chain A, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|B Chain B, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|C Chain C, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|D Chain D, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
Length = 438
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 110/239 (46%), Gaps = 41/239 (17%)
Query: 4 KTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAASTVAKQDSNGW 63
K ++ F GE +P+A+ + E ++K G GL T A++ N W
Sbjct: 114 KFLKPFISGEGEPLASLMHSEPNGTANWLQKGGP-GL------------QTTARKVGNEW 160
Query: 64 TLNGTKAWITN--GYESE----ATVVFATTDKSKKHKG--------ISAFIVDKPTKGLS 109
++G K W +N G++ + A VV +D K + I+ +V + T +
Sbjct: 161 VISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANN 220
Query: 110 -------LGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGM---GFKIAMMTLDAGRI 159
LG+ E I S + F + +P ENLL PG+ G + A +
Sbjct: 221 KKDAYQILGEPELAGHITTSGPHTR-FTEFHVPHENLLCTPGLKAQGLVETAFAMSAALV 279
Query: 160 GIASQALGIAQASLDCAVEYASKRTAFG-QPIIKLQSIQQKIADMSLKLESARLLTWRA 217
G + A+G A+A+ + A+ +A T G + II+ QS+ K+ D ++LE++RLL W+A
Sbjct: 280 G--AMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKA 336
>pdb|2C12|A Chain A, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|B Chain B, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|C Chain C, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|D Chain D, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|E Chain E, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|F Chain F, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
Length = 439
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 110/239 (46%), Gaps = 41/239 (17%)
Query: 4 KTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAASTVAKQDSNGW 63
K ++ F GE +P+A+ + E ++K G GL T A++ N W
Sbjct: 115 KFLKPFISGEGEPLASLMHSEPNGTANWLQKGGP-GL------------QTTARKVGNEW 161
Query: 64 TLNGTKAWITN--GYESE----ATVVFATTDKSKKHKG--------ISAFIVDKPTKGLS 109
++G K W +N G++ + A VV +D K + I+ +V + T +
Sbjct: 162 VISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANN 221
Query: 110 -------LGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGM---GFKIAMMTLDAGRI 159
LG+ E I S + F + +P ENLL PG+ G + A +
Sbjct: 222 KKDAYQILGEPELAGHITTSGPHTR-FTEFHVPHENLLCTPGLKAQGLVETAFAMSAALV 280
Query: 160 GIASQALGIAQASLDCAVEYASKRTAFG-QPIIKLQSIQQKIADMSLKLESARLLTWRA 217
G + A+G A+A+ + A+ +A T G + II+ QS+ K+ D ++LE++RLL W+A
Sbjct: 281 G--AMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKA 337
>pdb|2ZAF|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 110/239 (46%), Gaps = 41/239 (17%)
Query: 4 KTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAASTVAKQDSNGW 63
K ++ F GE +P+A+ + E ++K G GL T A++ N W
Sbjct: 115 KFLKPFISGEGEPLASLMHSEPNGTANWLQKGGP-GL------------QTTARKVGNEW 161
Query: 64 TLNGTKAWITN--GYESE----ATVVFATTDKSKKHKG--------ISAFIVDKPTKGLS 109
++G K W +N G++ + A VV +D K + I+ +V + T +
Sbjct: 162 VISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANN 221
Query: 110 -------LGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGM---GFKIAMMTLDAGRI 159
LG+ E I S + F + +P ENLL PG+ G + A +
Sbjct: 222 KKDAYQILGEPELAGHITTSGPHTR-FTEFHVPHENLLCTPGLKAQGLVETAFAMSAALV 280
Query: 160 GIASQALGIAQASLDCAVEYASKRTAFG-QPIIKLQSIQQKIADMSLKLESARLLTWRA 217
G + A+G A+A+ + A+ +A T G + II+ QS+ K+ D ++LE++RLL W+A
Sbjct: 281 G--AMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKA 337
>pdb|3D9D|A Chain A, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|B Chain B, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|C Chain C, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|D Chain D, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9E|A Chain A, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|B Chain B, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|C Chain C, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|D Chain D, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3FCJ|A Chain A, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|B Chain B, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|C Chain C, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|D Chain D, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
Length = 438
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 110/239 (46%), Gaps = 41/239 (17%)
Query: 4 KTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAASTVAKQDSNGW 63
K ++ F GE +P+A+ + E ++K G GL T A++ N W
Sbjct: 114 KFLKPFISGEGEPLASLMHSEPNGTANWLQKGGP-GL------------QTTARKVGNEW 160
Query: 64 TLNGTKAWITN--GYESE----ATVVFATTDKSKKHKG--------ISAFIVDKPTKGLS 109
++G K W +N G++ + A VV +D K + I+ +V + T +
Sbjct: 161 VISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANN 220
Query: 110 -------LGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGM---GFKIAMMTLDAGRI 159
LG+ E I S + F + +P ENLL PG+ G + A +
Sbjct: 221 KKDAYQILGEPELAGHITTSGPHTR-FTEFHVPHENLLCTPGLKAQGLVETAFAMSAALV 279
Query: 160 GIASQALGIAQASLDCAVEYASKRTAFG-QPIIKLQSIQQKIADMSLKLESARLLTWRA 217
G + A+G A+A+ + A+ +A T G + II+ QS+ K+ D ++LE++RLL W+A
Sbjct: 280 G--AMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKA 336
>pdb|3D9F|A Chain A, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|B Chain B, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|C Chain C, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|D Chain D, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
Length = 438
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 110/239 (46%), Gaps = 41/239 (17%)
Query: 4 KTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAASTVAKQDSNGW 63
K ++ F GE +P+A+ + E ++K G GL T A++ N W
Sbjct: 114 KFLKPFISGEGEPLASLMHSEPNGTANWLQKGGP-GL------------QTTARKVGNEW 160
Query: 64 TLNGTKAWITN--GYESE----ATVVFATTDKSKKHKG--------ISAFIVDKPTKGLS 109
++G K W +N G++ + A VV +D K + I+ +V + T +
Sbjct: 161 VISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANN 220
Query: 110 -------LGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGM---GFKIAMMTLDAGRI 159
LG+ E I S + F + +P ENLL PG+ G + A +
Sbjct: 221 KKDAYQILGEPELAGHITTSGPHTR-FTEFHVPHENLLCTPGLKAQGLVETAFAMAAALV 279
Query: 160 GIASQALGIAQASLDCAVEYASKRTAFG-QPIIKLQSIQQKIADMSLKLESARLLTWRA 217
G + A+G A+A+ + A+ +A T G + II+ QS+ K+ D ++LE++RLL W+A
Sbjct: 280 G--AMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKA 336
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|B Chain B, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|C Chain C, Podospora Anserina Nitroalkane Oxidase
pdb|3MKH|D Chain D, Podospora Anserina Nitroalkane Oxidase
Length = 438
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 95/188 (50%), Gaps = 18/188 (9%)
Query: 54 TVAKQDSNGWTLNGTKAWITN--GYESE----ATVVF--ATTD----KSKKHKGISAFI- 100
T A+ + + W +NG K W TN G++ + A VV ATT + ++K + +
Sbjct: 153 TTARLEGDEWVINGEKMWATNCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVT 212
Query: 101 ---VDKPTKG-LSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDA 156
+D+ +G + + G + S + + + +P +N+L G G K+A D
Sbjct: 213 RADLDRNGEGSFEVLRHVATPGHTSVSGPHVRYTNVRVPTKNVLCPAGQGAKVAFGAFDG 272
Query: 157 GRIGIASQALGIAQASLDCAVEYASKRTAFGQ-PIIKLQSIQQKIADMSLKLESARLLTW 215
+ + + +G+ +A+ D A+++A + G P+++ Q+ ++ + ++ E+AR LTW
Sbjct: 273 SAVLVGAMGVGLMRAAFDAALKFAKEDNRGGAVPLLERQAFADLLSGVKIQTEAARALTW 332
Query: 216 RAAYLKDN 223
+AA+ +N
Sbjct: 333 KAAHAMEN 340
>pdb|2C0U|A Chain A, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|B Chain B, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|C Chain C, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|D Chain D, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
Length = 439
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 108/239 (45%), Gaps = 41/239 (17%)
Query: 4 KTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAASTVAKQDSNGW 63
K ++ F GE +P+A+ E ++K G GL T A++ N W
Sbjct: 115 KFLKPFISGEGEPLASLXHSEPNGTANWLQKGGP-GLQ------------TTARKVGNEW 161
Query: 64 TLNGTKAWITN--GYESE----ATVVFATTDKSKKHKG--------ISAFIVDKPTKGLS 109
++G K W +N G++ + A VV +D K + I+ +V + T +
Sbjct: 162 VISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANN 221
Query: 110 -------LGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGM---GFKIAMMTLDAGRI 159
LG+ E I S + F + +P ENLL PG+ G A +
Sbjct: 222 KKDAYQILGEPELAGHITTSGPHTR-FTEFHVPHENLLCTPGLKAQGLVETAFAXSAALV 280
Query: 160 GIASQALGIAQASLDCAVEYASKRTAFG-QPIIKLQSIQQKIADMSLKLESARLLTWRA 217
G + A+G A+A+ + A+ +A T G + II+ QS+ K+ D ++LE++RLL W+A
Sbjct: 281 G--AXAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSRLLVWKA 337
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of
Fk520 Polyketide Immunosuppresant
Length = 366
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 9/173 (5%)
Query: 34 KMGELGLMGVEVPEDLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKH 93
K+ +G + DL A T + D + ++G K W T ++ VVF +
Sbjct: 105 KLAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQEDGSG- 163
Query: 94 KGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMM- 152
+ +V T G+ + + G A+ L + +PA +L G G + M+
Sbjct: 164 ---AVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLA--GSGASLPMLV 218
Query: 153 --TLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADM 203
+L GR +A +GI +A AV +A R FG+P+ Q + IAD+
Sbjct: 219 AASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQLVAGHIADL 271
>pdb|3MXL|A Chain A, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|B Chain B, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|C Chain C, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
pdb|3MXL|D Chain D, Crystal Structure Of Nitrososynthase From Micromonospora
Carbonacea Var. Africana
Length = 395
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 50 GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKGLS 109
G + + + GW L+G K ++ + V A ++ +V + GL+
Sbjct: 139 GVVTELHSDGAGGWLLSGRKVLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAPGLT 198
Query: 110 LGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFK----IAMMTLDAGRIGIASQA 165
+ D LG+ AS T ++F+ C + A+ LL +G + +A T+ + I +
Sbjct: 199 VLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGARRDAVLAGQTVSS--ITMLGIY 256
Query: 166 LGIAQASLDCAVEYASKRTAFGQP 189
GIAQA+ D AV + + R G+P
Sbjct: 257 AGIAQAARDIAVGFCAGRG--GEP 278
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 4 KTVRDFTEGELKPI---AAKLDREHLYPKEQIKKMGELGLMGVEVPEDLG 50
+TV D G + I AA DR +P E ++ +LGLMG VP +LG
Sbjct: 14 RTVVDLLAGVIPRISAEAADRDRTGTFPVEAFEQFAKLGLMGATVPAELG 63
>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|B Chain B, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|C Chain C, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|D Chain D, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|E Chain E, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|F Chain F, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|G Chain G, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
pdb|4DOY|H Chain H, Crystal Structure Of Dibenzothiophene Desulfurization
Enzyme C
Length = 437
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 9/129 (6%)
Query: 59 DSNGWTLNGTKAWITNGYESEATVVFATT-DKSKKHKGISAFIVDKPTKGLSLGKKEDKL 117
+ G+ LNGTK + + S+ VF D S + I A + G++ +
Sbjct: 169 EDGGYVLNGTKHFCSGAKGSDLLFVFGVVQDDSPQQGAIIAAAIPTSRAGVTPNDDWAAI 228
Query: 118 GINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAG-------RIGIASQALGIAQ 170
G+ + + S F + + + +LG P F +A + + G ++ A+ LGIA
Sbjct: 229 GMRQTDSGSTDFHNVKVEPDEVLGAPNA-FVLAFIQSERGSLFAPIAQLIFANVYLGIAH 287
Query: 171 ASLDCAVEY 179
+LD A EY
Sbjct: 288 GALDAAREY 296
>pdb|1IS2|A Chain A, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|1IS2|B Chain B, Crystal Structure Of Peroxisomal Acyl-coa Oxidase-ii From
Rat Liver
pdb|2DDH|A Chain A, Crystal Structure Of Acyl-Coa Oxidase Complexed With
3-Oh-Dodecanoate
Length = 661
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 8/88 (9%)
Query: 61 NGWTLNGTKAWITN-GYESEATVVFATTDKSKKHKGISAFIV-------DKPTKGLSLGK 112
N T+ K W G S +V A + G+ AF+V KP G+++G
Sbjct: 166 NSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGD 225
Query: 113 KEDKLGINASSTCSLIFEDCSIPAENLL 140
K G L ++ IP EN+L
Sbjct: 226 IGPKFGYEEMDNGYLKMDNYRIPRENML 253
>pdb|4FVK|A Chain A, Structural And Functional Characterization Of
Neuraminidase-Like Molecule N10 Derived From Bat
Influenza A Virus
pdb|4FVK|B Chain B, Structural And Functional Characterization Of
Neuraminidase-Like Molecule N10 Derived From Bat
Influenza A Virus
Length = 376
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 39/97 (40%), Gaps = 15/97 (15%)
Query: 8 DFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAAS-TVAKQDSNGWTLN 66
DF G L + K+ +E GE G+ G + E S T A+ NG+ L
Sbjct: 248 DFPRGGLTTPSCKMAQEK----------GEGGIQGFILDEKPAWTSKTKAESSQNGFVLE 297
Query: 67 GTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDK 103
I NG ESE TV + S K G S F K
Sbjct: 298 Q----IPNGIESEGTVSLSYELFSNKRTGRSGFFQPK 330
>pdb|4GDI|A Chain A, A Subtype N10 Neuraminidase-Like Protein Of ALITTLE
YELLOW-Shouldered BatGUATEMALA1642009
pdb|4GDI|B Chain B, A Subtype N10 Neuraminidase-Like Protein Of ALITTLE
YELLOW-Shouldered BatGUATEMALA1642009
pdb|4GDI|C Chain C, A Subtype N10 Neuraminidase-Like Protein Of ALITTLE
YELLOW-Shouldered BatGUATEMALA1642009
pdb|4GDI|D Chain D, A Subtype N10 Neuraminidase-Like Protein Of ALITTLE
YELLOW-Shouldered BatGUATEMALA1642009
pdb|4GDI|E Chain E, A Subtype N10 Neuraminidase-Like Protein Of ALITTLE
YELLOW-Shouldered BatGUATEMALA1642009
pdb|4GDI|F Chain F, A Subtype N10 Neuraminidase-Like Protein Of ALITTLE
YELLOW-Shouldered BatGUATEMALA1642009
Length = 373
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 39/97 (40%), Gaps = 15/97 (15%)
Query: 8 DFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAAS-TVAKQDSNGWTLN 66
DF G L + K+ +E GE G+ G + E S T A+ NG+ L
Sbjct: 245 DFPRGGLTTPSCKMAQEK----------GEGGIQGFILDEKPAWTSKTKAESSQNGFVLE 294
Query: 67 GTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDK 103
I NG ESE TV + S K G S F K
Sbjct: 295 Q----IPNGIESEGTVSLSYELFSNKRTGRSGFFQPK 327
>pdb|4GEZ|A Chain A, Structure Of A Neuraminidase-Like Protein From
ABATGUATEMALA1642009
pdb|4GEZ|B Chain B, Structure Of A Neuraminidase-Like Protein From
ABATGUATEMALA1642009
pdb|4GEZ|C Chain C, Structure Of A Neuraminidase-Like Protein From
ABATGUATEMALA1642009
pdb|4GEZ|D Chain D, Structure Of A Neuraminidase-Like Protein From
ABATGUATEMALA1642009
pdb|4GEZ|E Chain E, Structure Of A Neuraminidase-Like Protein From
ABATGUATEMALA1642009
pdb|4GEZ|F Chain F, Structure Of A Neuraminidase-Like Protein From
ABATGUATEMALA1642009
pdb|4GEZ|G Chain G, Structure Of A Neuraminidase-Like Protein From
ABATGUATEMALA1642009
pdb|4GEZ|H Chain H, Structure Of A Neuraminidase-Like Protein From
ABATGUATEMALA1642009
pdb|4GEZ|I Chain I, Structure Of A Neuraminidase-Like Protein From
ABATGUATEMALA1642009
pdb|4GEZ|J Chain J, Structure Of A Neuraminidase-Like Protein From
ABATGUATEMALA1642009
pdb|4GEZ|K Chain K, Structure Of A Neuraminidase-Like Protein From
ABATGUATEMALA1642009
pdb|4GEZ|L Chain L, Structure Of A Neuraminidase-Like Protein From
ABATGUATEMALA1642009
Length = 378
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 39/97 (40%), Gaps = 15/97 (15%)
Query: 8 DFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAAS-TVAKQDSNGWTLN 66
DF G L + K+ +E GE G+ G + E S T A+ NG+ L
Sbjct: 250 DFPRGGLTTPSCKMAQEK----------GEGGIQGFILDEKPAWTSKTKAESSQNGFVLE 299
Query: 67 GTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDK 103
I NG ESE TV + S K G S F K
Sbjct: 300 Q----IPNGIESEGTVSLSYELFSNKRTGRSGFFQPK 332
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate
Bound
Length = 829
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 18/59 (30%)
Query: 28 PKEQIKKMGELGLMGVEVPEDLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFAT 86
P + IK+ G+LGL+GV + TL+G K+W+ EATV AT
Sbjct: 59 PDQLIKRRGKLGLVGVNL------------------TLDGVKSWLKPRLGQEATVGKAT 99
>pdb|3MWE|A Chain A, Truncated Human Atp-Citrate Lyase With Tartrate Bound
Length = 425
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 18/59 (30%)
Query: 28 PKEQIKKMGELGLMGVEVPEDLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFAT 86
P + IK+ G+LGL+GV + TL+G K+W+ EATV AT
Sbjct: 59 PDQLIKRRGKLGLVGVNL------------------TLDGVKSWLKPRLGQEATVGKAT 99
>pdb|3MWD|A Chain A, Truncated Human Atp-Citrate Lyase With Citrate Bound
Length = 425
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 18/59 (30%)
Query: 28 PKEQIKKMGELGLMGVEVPEDLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFAT 86
P + IK+ G+LGL+GV + TL+G K+W+ EATV AT
Sbjct: 59 PDQLIKRRGKLGLVGVNL------------------TLDGVKSWLKPRLGQEATVGKAT 99
>pdb|3GAU|A Chain A, Solution Structure Of Human Complement Factor H In 50 Mm
Nacl Buffer
pdb|3GAV|A Chain A, Solution Structure Of Human Complement Factor H In 137 Mm
Nacl Buffer
pdb|3GAW|A Chain A, Solution Structure Of Human Complement Factor H In 250 Mm
Nacl Buffer
Length = 1213
Score = 29.6 bits (65), Expect = 1.8, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 18/98 (18%)
Query: 49 LGAASTVAKQDSNGW----------TLNGTKAWITNGYESEATVVFATTDKSKKHKGISA 98
L A T NGW T + + I NG+ SE+ +A +K+K +
Sbjct: 404 LPKAQTTVTCMENGWSPTPRCIRVKTCSKSSIDIENGFISESQYTYALKEKAKYQCKLGY 463
Query: 99 FIVDKPTKG-LSLGKKEDKLGINASSTCSLIFEDCSIP 135
D T G ++ GK G +A TC + C IP
Sbjct: 464 VTADGETSGSITCGKD----GWSAQPTC---IKSCDIP 494
>pdb|1HAQ|A Chain A, Four Models Of Human Factor H Determined By Solution
Scattering Curve-Fitting And Homology Modelling
Length = 1213
Score = 28.5 bits (62), Expect = 3.4, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 18/98 (18%)
Query: 49 LGAASTVAKQDSNGW----------TLNGTKAWITNGYESEATVVFATTDKSKKHKGISA 98
L A T NGW T + + I NG+ SE+ +A +K+K +
Sbjct: 404 LPKAQTTVTCMENGWSPTPRCIRVKTCSKSSIDIENGFISESQYTYALKEKAKYQCKLGY 463
Query: 99 FIVDKPTKG-LSLGKKEDKLGINASSTCSLIFEDCSIP 135
D T G + GK G +A TC + C IP
Sbjct: 464 VTADGETSGSIRCGKD----GWSAQPTC---IKSCDIP 494
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,077,246
Number of Sequences: 62578
Number of extensions: 270540
Number of successful extensions: 863
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 711
Number of HSP's gapped (non-prelim): 104
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)