Query psy1215
Match_columns 260
No_of_seqs 114 out of 1364
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 19:59:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1215.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1215hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0139|consensus 100.0 1.3E-59 2.8E-64 379.5 20.0 259 1-259 43-375 (398)
2 KOG0140|consensus 100.0 6.1E-53 1.3E-57 335.8 21.3 259 1-259 34-369 (408)
3 KOG0141|consensus 100.0 4.2E-52 9.1E-57 331.3 16.2 258 2-259 48-384 (421)
4 cd01160 LCAD Long chain acyl-C 100.0 1.5E-47 3.3E-52 332.4 29.5 259 1-259 5-338 (372)
5 cd01157 MCAD Medium chain acyl 100.0 2.3E-47 4.9E-52 331.9 29.2 259 1-259 7-342 (378)
6 TIGR03207 cyc_hxne_CoA_dh cycl 100.0 2.4E-47 5.3E-52 330.9 28.9 258 1-259 7-339 (372)
7 cd01156 IVD Isovaleryl-CoA deh 100.0 2.9E-47 6.3E-52 331.0 29.2 259 1-259 8-341 (376)
8 cd01162 IBD Isobutyryl-CoA deh 100.0 7.7E-47 1.7E-51 328.1 29.3 258 1-259 7-339 (375)
9 PRK03354 crotonobetainyl-CoA d 100.0 1E-46 2.2E-51 327.7 29.5 258 1-259 11-342 (380)
10 PRK12341 putative acyl-CoA deh 100.0 1E-46 2.3E-51 327.8 29.3 258 1-259 11-343 (381)
11 TIGR03203 pimD_small pimeloyl- 100.0 9E-47 2E-51 327.2 28.5 256 1-259 10-343 (378)
12 PLN02519 isovaleryl-CoA dehydr 100.0 1.1E-46 2.5E-51 329.7 29.3 259 1-259 32-367 (404)
13 cd01151 GCD Glutaryl-CoA dehyd 100.0 1.9E-46 4.2E-51 326.7 30.1 254 1-259 19-347 (386)
14 cd01158 SCAD_SBCAD Short chain 100.0 5.3E-46 1.1E-50 322.8 28.9 259 1-259 5-338 (373)
15 PTZ00461 isovaleryl-CoA dehydr 100.0 8.6E-46 1.9E-50 324.7 28.5 254 1-259 43-372 (410)
16 cd01155 ACAD_FadE2 Acyl-CoA de 100.0 7.3E-45 1.6E-49 317.5 28.9 259 1-259 5-359 (394)
17 cd01161 VLCAD Very long chain 100.0 1.2E-44 2.6E-49 317.5 28.5 257 1-259 33-371 (409)
18 PLN02526 acyl-coenzyme A oxida 100.0 3.7E-44 7.9E-49 314.3 29.6 254 1-259 35-363 (412)
19 COG1960 CaiA Acyl-CoA dehydrog 100.0 1.5E-42 3.3E-47 303.1 28.5 258 2-259 12-353 (393)
20 cd01153 ACAD_fadE5 Putative ac 100.0 4.2E-42 9E-47 301.1 30.2 255 2-259 1-372 (407)
21 PRK09463 fadE acyl-CoA dehydro 100.0 1.1E-42 2.4E-47 318.8 26.4 235 24-259 107-435 (777)
22 cd01163 DszC Dibenzothiophene 100.0 1.2E-42 2.7E-47 302.0 23.5 249 5-259 2-339 (377)
23 PRK13026 acyl-CoA dehydrogenas 100.0 4.5E-42 9.9E-47 313.8 26.9 253 3-259 79-434 (774)
24 cd01159 NcnH Naphthocyclinone 100.0 1.5E-42 3.3E-47 300.7 20.1 252 5-259 2-334 (370)
25 TIGR03204 pimC_large pimeloyl- 100.0 5.1E-41 1.1E-45 293.0 29.3 255 1-259 10-355 (395)
26 cd01152 ACAD_fadE6_17_26 Putat 100.0 2.5E-41 5.4E-46 294.0 25.2 253 1-259 5-337 (380)
27 PLN02876 acyl-CoA dehydrogenas 100.0 9E-41 1.9E-45 314.3 29.7 259 1-259 408-783 (822)
28 cd00567 ACAD Acyl-CoA dehydrog 100.0 8.9E-40 1.9E-44 279.0 29.2 258 1-259 5-296 (327)
29 PTZ00456 acyl-CoA dehydrogenas 100.0 7.5E-40 1.6E-44 296.8 30.0 256 1-259 62-444 (622)
30 PLN02636 acyl-coenzyme A oxida 100.0 1.1E-39 2.4E-44 298.3 28.8 258 2-259 68-450 (686)
31 cd01154 AidB Proteins involved 100.0 2.1E-39 4.6E-44 284.5 29.4 249 5-259 36-383 (418)
32 KOG0137|consensus 100.0 1.7E-40 3.7E-45 284.9 21.5 256 3-260 88-426 (634)
33 KOG0138|consensus 100.0 1.4E-40 3E-45 264.8 18.5 254 1-259 61-391 (432)
34 PLN02312 acyl-CoA oxidase 100.0 3.5E-37 7.6E-42 281.3 27.6 239 21-259 100-452 (680)
35 PRK11561 isovaleryl CoA dehydr 100.0 3E-36 6.4E-41 268.0 26.8 200 51-259 195-406 (538)
36 KOG1469|consensus 100.0 2.8E-37 6E-42 242.6 14.1 210 50-259 130-347 (392)
37 PTZ00460 acyl-CoA dehydrogenas 100.0 2.6E-34 5.7E-39 261.4 26.4 210 50-259 143-396 (646)
38 cd01150 AXO Peroxisomal acyl-C 100.0 3.5E-33 7.7E-38 254.1 22.8 210 50-259 150-409 (610)
39 PLN02443 acyl-coenzyme A oxida 100.0 2.6E-31 5.7E-36 242.3 25.5 210 50-259 147-405 (664)
40 TIGR02309 HpaB-1 4-hydroxyphen 100.0 4.4E-30 9.6E-35 226.3 18.6 197 56-260 171-391 (477)
41 PTZ00457 acyl-CoA dehydrogenas 100.0 2.5E-29 5.4E-34 222.5 22.3 175 51-251 150-336 (520)
42 KOG0135|consensus 99.9 5.4E-23 1.2E-27 176.2 14.1 211 50-260 172-430 (661)
43 PF00441 Acyl-CoA_dh_1: Acyl-C 99.8 2.3E-17 5.1E-22 124.9 14.7 116 144-259 1-116 (150)
44 COG2368 Aromatic ring hydroxyl 99.7 5.7E-16 1.2E-20 132.6 16.8 196 57-257 176-396 (493)
45 TIGR02310 HpaB-2 4-hydroxyphen 99.7 8.3E-16 1.8E-20 135.7 18.4 194 56-255 178-398 (519)
46 KOG0136|consensus 99.6 5E-14 1.1E-18 124.0 15.1 211 50-260 159-414 (670)
47 PF08028 Acyl-CoA_dh_2: Acyl-C 99.3 2.9E-11 6.3E-16 89.8 12.4 101 159-259 1-111 (134)
48 PF11794 HpaB_N: 4-hydroxyphen 99.2 7.8E-11 1.7E-15 95.9 8.2 84 57-140 167-263 (264)
49 PF02770 Acyl-CoA_dh_M: Acyl-C 99.1 1.9E-10 4.2E-15 70.4 6.0 39 50-88 14-52 (52)
50 PF02771 Acyl-CoA_dh_N: Acyl-C 98.1 2.3E-06 5E-11 61.2 3.0 49 1-49 6-54 (113)
51 PF03241 HpaB: 4-hydroxyphenyl 97.4 0.0043 9.3E-08 49.3 12.1 68 190-257 44-116 (205)
52 PTZ00457 acyl-CoA dehydrogenas 92.9 1.7 3.7E-05 39.7 11.2 71 185-255 428-499 (520)
53 KOG0137|consensus 92.8 2.4 5.3E-05 38.6 11.6 95 159-255 508-603 (634)
54 PF12584 TRAPPC10: Trafficking 49.1 49 0.0011 24.6 5.1 62 58-132 66-140 (147)
55 PRK09463 fadE acyl-CoA dehydro 42.7 3.2E+02 0.007 26.7 10.5 57 186-246 559-615 (777)
56 PF15631 Imm-NTF2-2: NTF2 fold 36.6 48 0.001 21.1 2.8 16 55-70 25-40 (66)
57 PF11745 DUF3304: Protein of u 29.0 1.5E+02 0.0032 21.1 4.7 24 92-115 49-73 (118)
58 PHA02087 hypothetical protein 28.5 1E+02 0.0023 19.5 3.2 33 92-132 41-73 (83)
59 PF04115 Ureidogly_hydro: Urei 25.6 1.6E+02 0.0035 22.4 4.6 49 67-116 80-129 (165)
60 PF05046 Img2: Mitochondrial l 21.1 77 0.0017 21.3 1.9 40 1-40 40-87 (87)
No 1
>KOG0139|consensus
Probab=100.00 E-value=1.3e-59 Score=379.46 Aligned_cols=259 Identities=53% Similarity=0.788 Sum_probs=252.9
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++++++|+++.+.|...++|+++++|..+++.+.++|++++.+|++|
T Consensus 43 ~l~~tvrkfa~~~i~Plv~~mD~~~~~~~~v~k~~fe~Glmgv~vpeeyGGsG~df~~~~~v~EEisk~d~sv~~~v~v~ 122 (398)
T KOG0139|consen 43 MLQKTVRKFAQEEIKPLVREMDRESRYPASVIKGLFELGLMGVEVPEEYGGSGLDFFAAAIVIEEISKVDASVGVIVDVQ 122 (398)
T ss_pred HHHHHHHHHHHHhcchHHHhhhhhccCCHHHHHHHhhcCcceeecChhhCCCchhHHHHHHHHHHHhccCccceeEEEec
Confidence 3678999999999999999999999999999999999999999999999
Q ss_pred -------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEEE
Q psy1215 50 -------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFAT 86 (260)
Q Consensus 50 -------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~ 86 (260)
.++.|+|++++|.|+|||.|+|+||+..|++++|++.
T Consensus 123 ntL~~~~i~~fGteeqK~~~~P~~~~d~vgsfAlSEpgaGSDa~A~~T~Ak~~Gd~~viNGsKmWItN~~~A~~~lVfan 202 (398)
T KOG0139|consen 123 NTLYLPLIIQFGTEEQKEKYLPKLTGDLVGSFALSEPGAGSDAFALKTTAKKDGDDYVINGSKMWITNAGEADWFLVFAN 202 (398)
T ss_pred ccccchHHHHhCcHHHHhhhcchhhccccceeeecCCCCCcchHHhhhhHhhcCCeEEEecceeeecCCcccceEEEEEe
Confidence 4578999999999999999999999999999999999
Q ss_pred eCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHHH
Q psy1215 87 TDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQAL 166 (260)
Q Consensus 87 ~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~~ 166 (260)
+++..+.+++++|+||+++||+++..+.+++|||+++++.++|+||+||++++||..|.|+++....++-+|+.++++++
T Consensus 203 ~d~~~~~Kgit~fiV~rd~~Gl~~~k~eDKLGmRaSsTcql~fedVrVpks~IlGe~G~GykyAm~~Ln~gRIgi~Aqml 282 (398)
T KOG0139|consen 203 ADPSKGYKGITCFIVPRDTPGLSLGKKEDKLGMRASSTCQLHFEDVRVPKSSILGEYGKGYKYAIEVLNAGRIGIGAQML 282 (398)
T ss_pred cChhhccCceeEEEeeCCCCCcccCCccccccccccceeeEEeccccccchhhcccCCcchHHHHHhcCccceeehhhhh
Confidence 98878899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHH
Q psy1215 167 GIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYNA 246 (260)
Q Consensus 167 G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 246 (260)
|.+++|+|.+++|+++|.+||+++.++|.+|++||++.+++|++|.++|++++.-|.+.|...+++|+|+++++.+..++
T Consensus 283 glaQ~c~d~tI~Y~q~R~~FGk~l~d~Q~iQhqiA~~~teiEaaRlL~ynaAr~k~~G~pf~keAAMAKl~ase~A~~~t 362 (398)
T KOG0139|consen 283 GLAQGCFDETIPYAQERLQFGKRLLDFQGLQHQIADMATEIEAARLLVYNAARMKDQGLPFVKEAAMAKLYASEVATKTT 362 (398)
T ss_pred hhhHhHHHhhhHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCcC
Q psy1215 247 HQAIQIPIITKYL 259 (260)
Q Consensus 247 ~~~~~~~Gg~g~~ 259 (260)
+.|+|.+||.||.
T Consensus 363 ~qCiq~lGG~Gyt 375 (398)
T KOG0139|consen 363 HQCIQWLGGVGYT 375 (398)
T ss_pred HHHHHHHhccccc
Confidence 9999999999996
No 2
>KOG0140|consensus
Probab=100.00 E-value=6.1e-53 Score=335.81 Aligned_cols=259 Identities=41% Similarity=0.589 Sum_probs=250.5
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|.++++-|++.++|+.+.+|-+++++..++|+.+..+|++|
T Consensus 34 e~q~~A~kFa~~e~~P~aae~Dk~ge~P~~iirkA~~lG~~~~~ip~~~GG~Gls~l~t~lI~E~LayGCtg~~~~I~~~ 113 (408)
T KOG0140|consen 34 EFQEAARKFAKDEMIPNAAEYDKSGEFPWEIIRKAHELGFMNTYIPEDYGGLGLSRLDTCLIFEALAYGCTGIQTAISIH 113 (408)
T ss_pred HHHHHHHHHHHHhhccchhhhcccCCCcHHHHHHHHHcccCcccCccccCCCCchhHHHHHHHHHHHccchhHHHHHhcc
Confidence 3688899999999999999999999999999999999999999999988
Q ss_pred -------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEEE
Q psy1215 50 -------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFAT 86 (260)
Q Consensus 50 -------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~ 86 (260)
.++.|+|++.+|.|+|||.|.||||+.+++|++|++|
T Consensus 114 ~l~~~pi~~~gneeqKkk~lg~l~~~p~~asYcvTEPgAGSDvagikTka~KkGDeYiiNGsKawItg~G~anwyfVlaR 193 (408)
T KOG0140|consen 114 NLAAWPIILSGNEEQKKKYLGRLAEEPKVASYCVTEPGAGSDVAGIKTKAEKKGDEYIINGSKAWITGAGHANWYFVLAR 193 (408)
T ss_pred chhhhhehhcCcHHHHHhhhhhhhcchhhhhhhccCCCCCcchhhhhhhhhhcCCEEEEcCceeeeecCCccceEEEEEe
Confidence 5688999999999999999999999999999999999
Q ss_pred eCCC---CCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHH
Q psy1215 87 TDKS---KKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIAS 163 (260)
Q Consensus 87 ~~~~---~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a 163 (260)
++++ ++.+.+..|+|+.++||++......+||+|.+++-.|+|+||+||.+|+||.+|.||++.+..|+..|+.+++
T Consensus 194 td~~pk~p~~Kaft~fiVe~dTpGlt~GkKE~nmGqr~sdTR~itFEDvrVP~~Nvlg~~G~GFkvAm~~fd~tRp~vAa 273 (408)
T KOG0140|consen 194 TDPDPKTPAGKAFTAFIVEGDTPGLTRGKKEKNMGQRCSDTRGITFEDVRVPKENVLGAPGAGFKVAMGGFDKTRPNVAA 273 (408)
T ss_pred cCCCCCCCCCcceEEEEEeCCCCCcCcChhhhcccccCCCCceeeeeecccchhccccCCCccceehhhhccCCCCchhh
Confidence 9875 4578899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH
Q psy1215 164 QALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETAT 243 (260)
Q Consensus 164 ~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 243 (260)
+++|.+.++++.+.+|+.+|++||.+|+++|.+|-.||+|...++.+|.+.+.+++..|++.+.....+++|.++++.|-
T Consensus 274 ~alG~A~r~ld~a~ky~~eRK~FG~~iA~hQ~vqF~LAdMA~~le~aRL~~~~aa~evd~~r~~sy~aSiAK~fA~D~an 353 (408)
T KOG0140|consen 274 GALGLAQRCLDEATKYALERKAFGTPIANHQAVQFMLADMAINLELARLMTRNAAWEVDNGRRNSYYASIAKLFATDTAN 353 (408)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCcChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHHccCCCCcC
Q psy1215 244 YNAHQAIQIPIITKYL 259 (260)
Q Consensus 244 ~~~~~~~~~~Gg~g~~ 259 (260)
.++..++|++||.||.
T Consensus 354 ~~at~AvQifGG~Gfn 369 (408)
T KOG0140|consen 354 QAATNAVQIFGGNGFN 369 (408)
T ss_pred HHHHHHHHhhccCCcc
Confidence 9999999999999985
No 3
>KOG0141|consensus
Probab=100.00 E-value=4.2e-52 Score=331.29 Aligned_cols=258 Identities=40% Similarity=0.596 Sum_probs=249.1
Q ss_pred HHHHHHHHHhcccCchhhhhhhcCCC--CHHHHHHHHHcCCccccCcccc------------------------------
Q psy1215 2 LYKTVRDFTEGELKPIAAKLDREHLY--PKEQIKKMGELGLMGVEVPEDL------------------------------ 49 (260)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~G~~~~~vp~~~------------------------------ 49 (260)
+|+.+++|+++.+.|++.++|+.+.| .++.|++|+++|++|++.|++|
T Consensus 48 ~r~sv~kF~qeelaP~a~eidk~n~~~~~r~~WkklG~~gllGita~~~~GG~G~~y~~h~ivmEE~sra~g~v~lsyga 127 (421)
T KOG0141|consen 48 LRESVRKFFQEELAPHASEIDKANEFKDLREFWKKLGKQGLLGITAPEEYGGSGGGYLSHCIVMEEISRASGGVALSYGA 127 (421)
T ss_pred HHHHHHHHHHHhhcchhhhhhhcCCcchHHHHHHHhhhcCcccccchhhhCCCchhHHHHHHHHHHHHhhcCCccccccc
Confidence 78999999999999999999999999 5899999999999999999998
Q ss_pred ---------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEE
Q psy1215 50 ---------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVF 84 (260)
Q Consensus 50 ---------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~ 84 (260)
.++.+.|.+++++|+|||.|.||||++.+|.++|.
T Consensus 128 HSnlcinqlvrnGseeQkekylPkl~sGe~iGalAMsEp~AGSDvv~mK~~Aek~g~~yiLNGsK~witNG~~advliVy 207 (421)
T KOG0141|consen 128 HSNLCINQLVRNGSEEQKEKYLPKLISGEHIGALAMSEPGAGSDVVSMKLKAEKKGDDYILNGSKFWITNGPDADVLIVY 207 (421)
T ss_pred ccchHHHHHHhcCCHHHHHhhhhhhhcccccceeeecCCCCCCccceeeeeceecCCcEEecCcEEEEecCCCCcEEEEE
Confidence 45778899999999999999999999999999999
Q ss_pred EEeCCC--CCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHH
Q psy1215 85 ATTDKS--KKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIA 162 (260)
Q Consensus 85 a~~~~~--~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~ 162 (260)
+.++.. .+..++++|+|+.+.||+......+++|||+++++++.|+|++||++++||.++.|+.+++..++..|+.++
T Consensus 208 AkTd~~a~~~~hGIt~FiVEkgm~GFs~~~KLdKlGmrgsdTcELvFed~~vpas~ilg~enkGvYvlMsgLd~ERLvla 287 (421)
T KOG0141|consen 208 AKTDHSAVPPSHGITAFIVEKGMPGFSTAQKLDKLGMRGSDTCELVFEDCKVPASNILGEENKGVYVLMSGLDLERLVLA 287 (421)
T ss_pred EecCCCCCCCcCceEEEEEcCCCcccccchhhHhhcCCCCcchheehhhccCcHHHhcCcCCceEEEEecCCChhHhhhc
Confidence 999864 567899999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHH
Q psy1215 163 SQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETA 242 (260)
Q Consensus 163 a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~ 242 (260)
+..+|+++.++|.+..|+.+|++||++++.+|.+|.++|+|+..+.++|++++.+++..|.+.....+.++++.|+++.+
T Consensus 288 ~gplglmqa~~d~~~~Y~~qR~afgk~ig~fQ~~QgklAdmyT~l~a~Rsyvy~va~~~d~g~~~~kdcag~il~aaE~~ 367 (421)
T KOG0141|consen 288 AGPLGLMQAALDETFPYAHQRKAFGKKIGHFQLLQGKLADMYTTLCASRSYVYNVARACDAGNVDPKDCAGVILYAAEKA 367 (421)
T ss_pred cCchHHHHHHHHHhhhHHHHHHHhCCchhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhhhhhhhhHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCCcC
Q psy1215 243 TYNAHQAIQIPIITKYL 259 (260)
Q Consensus 243 ~~~~~~~~~~~Gg~g~~ 259 (260)
..++-.|+|++||.||+
T Consensus 368 tqVald~iQ~~GGnGYi 384 (421)
T KOG0141|consen 368 TQVALDAIQCLGGNGYI 384 (421)
T ss_pred HHHHHHHHhhccCcccc
Confidence 99999999999999997
No 4
>cd01160 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.
Probab=100.00 E-value=1.5e-47 Score=332.35 Aligned_cols=259 Identities=35% Similarity=0.534 Sum_probs=240.3
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.+.|++.+.|+++++|+++|++|++.||+++.+|++|
T Consensus 5 ~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~ 84 (372)
T cd01160 5 AFRDVVRRFFAKEVAPFHHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARAGGSGPGLSLHT 84 (372)
T ss_pred HHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 4789999999999999988899998999999999999999999999988
Q ss_pred -------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEEE
Q psy1215 50 -------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFAT 86 (260)
Q Consensus 50 -------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~ 86 (260)
.++.|+++++++||+|||+|.|+||++.+|++++.++
T Consensus 85 ~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~Ad~~~v~a~ 164 (372)
T cd01160 85 DIVSPYITRAGSPEQKERVLPQMVAGKKIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVVIVVAR 164 (372)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCeEEEEEeCCEEEEeeEEEEecCCCccCEEEEEEE
Confidence 1245788999999999999999999999999999999
Q ss_pred eCCC-CCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHH
Q psy1215 87 TDKS-KKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQA 165 (260)
Q Consensus 87 ~~~~-~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~ 165 (260)
++++ ++..++.+|+||+++||+++.++|+.+||++++++++.|+||+||.+++|+.++.|+......+...++.+++++
T Consensus 165 ~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~~~~~aa~~ 244 (372)
T cd01160 165 TGGEARGAGGISLFLVERGTPGFSRGRKLKKMGWKAQDTAELFFDDCRVPAENLLGEENKGFYYLMQNLPQERLLIAAGA 244 (372)
T ss_pred eCCCCCCCCceEEEEEeCCCCCeecCCccccccCCCCCeEEEEecceEccHHHcCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 8754 234578999999999999998889999999999999999999999999999999999888888899999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHH
Q psy1215 166 LGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYN 245 (260)
Q Consensus 166 ~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 245 (260)
+|+++++++.+++|+++|.+||+++.++|.+|++++++.+++++++++++.++...+.+.......+++|.++++.+.++
T Consensus 245 lG~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~~~a~~~~~~aa~~~~~~~~~~~~~~~aK~~~~~~a~~v 324 (372)
T cd01160 245 LAAAEFMLEETRNYVKQRKAFGKTLAQLQVVRHKIAELATKVAVTRAFLDNCAWRHEQGRLDVAEASMAKYWATELQNRV 324 (372)
T ss_pred HHHHHHHHHHHHHHHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988876555677889999999999999
Q ss_pred HHHHHHccCCCCcC
Q psy1215 246 AHQAIQIPIITKYL 259 (260)
Q Consensus 246 ~~~~~~~~Gg~g~~ 259 (260)
++.+++++||.||+
T Consensus 325 ~~~a~~~~Gg~g~~ 338 (372)
T cd01160 325 AYECVQLHGGWGYM 338 (372)
T ss_pred HHHHHHHhcCceec
Confidence 99999999999996
No 5
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase. MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.
Probab=100.00 E-value=2.3e-47 Score=331.86 Aligned_cols=259 Identities=37% Similarity=0.525 Sum_probs=239.0
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.+.|.+.++|+++++|.++|+.|++.||+++.+|++|
T Consensus 7 ~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~ 86 (378)
T cd01157 7 EFQETARKFAREEIIPVAAEYDKSGEYPWPLIKRAWELGLMNTHIPEDCGGLGLGTFDTCLITEELAYGCTGVQTAIEAN 86 (378)
T ss_pred HHHHHHHHHHHHhcccchHHHHhhCCCCHHHHHHHHhCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhhhHHHHHHHhh
Confidence 3789999999999999988899988999999999999999999999998
Q ss_pred -------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEEE
Q psy1215 50 -------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFAT 86 (260)
Q Consensus 50 -------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~ 86 (260)
..+.|++++++|||+|||+|.|+|+++.+|+++|+++
T Consensus 87 ~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad~~lv~a~ 166 (378)
T cd01157 87 SLGQMPVIISGNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLAR 166 (378)
T ss_pred hhhHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhcCeEEEEEcCCEEEEeeEEEeecCCccCCEEEEEEE
Confidence 1245788999999999999999999999999999999
Q ss_pred eCCCC---CCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHH
Q psy1215 87 TDKSK---KHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIAS 163 (260)
Q Consensus 87 ~~~~~---~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a 163 (260)
++++. +..++++|+||+++||+++.++|..+|+++++++++.|+||+||.+++|+.++.|+......+...|+.+++
T Consensus 167 ~~~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~s~~~~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa 246 (378)
T cd01157 167 SDPDPKCPASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTRGITFEDVRVPKENVLIGEGAGFKIAMGAFDKTRPPVAA 246 (378)
T ss_pred eCCcccCCCCCceEEEEEcCCCCCeeccCcccccCCCCCCceEEEeccEEECHHHcCCCCCchHHHHHHHHhhhHHHHHH
Confidence 86432 135788999999999999989999999999999999999999999999999889998888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH
Q psy1215 164 QALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETAT 243 (260)
Q Consensus 164 ~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 243 (260)
.++|+++++++.+++|+++|.+||+++.++|.+|++++++.++++++|++++.++..+|.+.......+++|+++++.+.
T Consensus 247 ~~lG~a~~~l~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~aK~~~~~~a~ 326 (378)
T cd01157 247 GAVGLAQRALDEATKYALERKTFGKLIAEHQAVSFMLADMAMKVELARLAYQRAAWEVDSGRRNTYYASIAKAFAADIAN 326 (378)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888765555677889999999999
Q ss_pred HHHHHHHHccCCCCcC
Q psy1215 244 YNAHQAIQIPIITKYL 259 (260)
Q Consensus 244 ~~~~~~~~~~Gg~g~~ 259 (260)
++++.+++++||.||.
T Consensus 327 ~~~~~a~~~~Gg~g~~ 342 (378)
T cd01157 327 QLATDAVQIFGGNGFN 342 (378)
T ss_pred HHHHHHHHHhCCCccC
Confidence 9999999999999996
No 6
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase. Cyclohex-1-ene-1carboxyl-CoA is an intermediate in the anaerobic degradation of benzoyl-CoA derived from varioius aromatic compounds, in Rhodopseudomonas palustris but not Thauera aromatica. The aliphatic compound cyclohexanecarboxylate, can be converted to the same intermediate in two steps. The first step is its ligation to coenzyme A. The second is the action of this enzyme, cyclohexanecarboxyl-CoA dehydrogenase.
Probab=100.00 E-value=2.4e-47 Score=330.90 Aligned_cols=258 Identities=34% Similarity=0.513 Sum_probs=238.2
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.+.|.+.+.|+.+.+|.++|+.|++.||+++.+|++|
T Consensus 7 ~l~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~ 86 (372)
T TIGR03207 7 ALADTARRFARERIAPGFKERDKTRVLDRELMRDMGEMGFIGPELPEEHGGLGMGCLAAGVIHEQIARADLSMSYVNLLA 86 (372)
T ss_pred HHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHHCCCCcccCChhHCCCCCCHHHHHHHHHHHHhhCccHHHHHHhh
Confidence 3789999999999999988888888999999999999999999999988
Q ss_pred -------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEEE
Q psy1215 50 -------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFAT 86 (260)
Q Consensus 50 -------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~ 86 (260)
.++.+++++++|||+|||+|.|+||+..+|+++|+++
T Consensus 87 ~~~~~~l~~~g~~~~~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~g~~lnG~k~~vs~~~~ad~~lv~a~ 166 (372)
T TIGR03207 87 SLNGQILAQHARPEIAKPWLGQLIAGEALFAIALTEPRGGSDAARLRLRAERDGDDYVLNGEKTSISAADQADAAVVFAR 166 (372)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCcChhhCEEEEEEeCCEEEEEEEEEEEcCCCcCCEEEEEEE
Confidence 1244688999999999999999999999999999999
Q ss_pred eCCC-CCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHH
Q psy1215 87 TDKS-KKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQA 165 (260)
Q Consensus 87 ~~~~-~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~ 165 (260)
++++ ++..++++|+||+++|||++ .+|+.+|+++++++++.|+||+||++++++.++.|+......++..|+.+++++
T Consensus 167 ~~~~~~~~~~~~~~lVp~~~~gv~~-~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~a~~~ 245 (372)
T TIGR03207 167 TGSEAEGARGISAFLVPMDLPGITR-NRFDCHGQRAIGRGSIFFENVRVPADHMLGNEGQGFVQVMQGFDFSRALIGLQV 245 (372)
T ss_pred cCCCCCCCCceEEEEEcCCCCCeec-CcchhccCCCCCeeEEEECceeccHHHcCCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 8643 23456889999999999997 679999999999999999999999999999999999888888899999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHH
Q psy1215 166 LGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYN 245 (260)
Q Consensus 166 ~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 245 (260)
+|+++++++.+++|+++|++||+|+.++|.||++++++.+.++++|++++.++...|.+.+.....+++|.++++.+.++
T Consensus 246 ~G~a~~al~~a~~~~~~R~~fg~~i~~~q~v~~~la~~~~~~~~ar~l~~~aa~~~~~~~~~~~~~~~aK~~~~~~a~~v 325 (372)
T TIGR03207 246 LAVARAALDETWRYVAERQAFGKPLSAFQGVSHPLADAETQVEAARLLCLQTLWLKDHGLPHTSEAAMCKWWAPKLAYDV 325 (372)
T ss_pred HHHHHHHHHHHHHHHHhccccCCchhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988876655667889999999999999
Q ss_pred HHHHHHccCCCCcC
Q psy1215 246 AHQAIQIPIITKYL 259 (260)
Q Consensus 246 ~~~~~~~~Gg~g~~ 259 (260)
++.++|++||.||.
T Consensus 326 ~~~a~~v~Gg~g~~ 339 (372)
T TIGR03207 326 IHQCLLTHGHGGYD 339 (372)
T ss_pred HHHHHHHhcCCcCC
Confidence 99999999999986
No 7
>cd01156 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.
Probab=100.00 E-value=2.9e-47 Score=331.00 Aligned_cols=259 Identities=42% Similarity=0.669 Sum_probs=240.7
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
+|++.+++|+.+.+.|.+.+.|+++.+|.++|+.|++.||+++.+|++|
T Consensus 8 ~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~~ 87 (376)
T cd01156 8 MLRQSVREFAQKEIAPLAAKIDRDNEFPRDLWRKMGKLGLLGITAPEEYGGSGMGYLAHVIIMEEISRASGSVALSYGAH 87 (376)
T ss_pred HHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccCCHhhCCCCCCHHHHHHHHHHHhccchhHHHHHHHh
Confidence 3789999999999999888888888999999999999999999999998
Q ss_pred --------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEE
Q psy1215 50 --------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFA 85 (260)
Q Consensus 50 --------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a 85 (260)
.++.++++++++||+|||+|.|+||++.+|++++.+
T Consensus 88 ~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~sEp~~gs~~~~~~t~a~~~~~g~~l~G~k~~vs~~~~a~~~lv~a 167 (376)
T cd01156 88 SNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRAEKKGDRYVLNGSKMWITNGPDADTLVVYA 167 (376)
T ss_pred hhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhCeEEEEEeCCEEEEEEEEEEecCCCcCCEEEEEE
Confidence 124578899999999999999999999999999999
Q ss_pred EeCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHH
Q psy1215 86 TTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQA 165 (260)
Q Consensus 86 ~~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~ 165 (260)
+++++++..++++|+||++.|||++.++|+.+|+++++++++.|+||+||++++|+..+.|+......+...|+.+++++
T Consensus 168 ~~~~~~~~~~~~~~lv~~~~~gv~~~~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~ 247 (376)
T cd01156 168 KTDPSAGAHGITAFIVEKGMPGFSRAQKLDKLGMRGSNTCELVFEDCEVPEENILGGENKGVYVLMSGLDYERLVLAGGP 247 (376)
T ss_pred EeCCCCCCCceEEEEEcCCCCCeecCCccccccCCCCCceEEEeCceEecHHHcCCCCCchHHHHHHHHhhHHHHHHHHH
Confidence 98754445678999999999999998899999999999999999999999999999999999888888899999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHH
Q psy1215 166 LGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYN 245 (260)
Q Consensus 166 ~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 245 (260)
+|+++++++.+++|+++|.+||+++.++|.+|++++++.++++++|++++.++..+|.+.......+.+|.++++.+.++
T Consensus 248 lG~a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~k~~~~~~a~~~ 327 (376)
T cd01156 248 IGIMQAALDVAIPYAHQRKQFGQPIGEFQLVQGKLADMYTRLNASRSYLYTVAKACDRGNMDPKDAAGVILYAAEKATQV 327 (376)
T ss_pred HHHHHHHHHHHHHHHHHhHhcCcchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999887655567788999999999999
Q ss_pred HHHHHHccCCCCcC
Q psy1215 246 AHQAIQIPIITKYL 259 (260)
Q Consensus 246 ~~~~~~~~Gg~g~~ 259 (260)
++.+++++||.||.
T Consensus 328 ~~~a~~~~Gg~g~~ 341 (376)
T cd01156 328 ALDAIQILGGNGYI 341 (376)
T ss_pred HHHHHHHhcCcccc
Confidence 99999999999996
No 8
>cd01162 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.
Probab=100.00 E-value=7.7e-47 Score=328.09 Aligned_cols=258 Identities=41% Similarity=0.621 Sum_probs=238.7
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.+.|++.++|+++++|.++|+.|++.||+++.+|++|
T Consensus 7 ~l~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~l~~~~~~~~~~~~~~ 86 (375)
T cd01162 7 AIQEVARAFAAKEMAPHAADWDQKKHFPVDVLRKAAELGFGGIYIRDDVGGSGLSRLDASIIFEALSTGCVSTAAYISIH 86 (375)
T ss_pred HHHHHHHHHHHHhCCcchhhHHhhCCCCHHHHHHHHHCCCCCcCCCHhhCCCCCCHHHHHHHHHHHHhhchhHHHHHHHh
Confidence 4789999999999999988889999999999999999999999999988
Q ss_pred -------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEEE
Q psy1215 50 -------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFAT 86 (260)
Q Consensus 50 -------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~ 86 (260)
..+.++++++++||+|||+|.|+||+..+|+++|+++
T Consensus 87 ~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~l~G~k~~vs~~~~ad~~~v~a~ 166 (375)
T cd01162 87 NMCAWMIDSFGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSDVYVVMAR 166 (375)
T ss_pred hhHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCCCCChhhCEEEEEEeCCEEEEEEEEEEecCCCCCCEEEEEEE
Confidence 1245788999999999999999999999999999999
Q ss_pred eCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHHH
Q psy1215 87 TDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQAL 166 (260)
Q Consensus 87 ~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~~ 166 (260)
.+++ +..++++|+||++.||+++.++|+++|+++++++++.||||+||.+++|+.++.|+......+...|+.++++++
T Consensus 167 ~~~~-~~~~~~~~lv~~~~~gv~v~~~~~~~g~~~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~l 245 (375)
T cd01162 167 TGGE-GPKGISCFVVEKGTPGLSFGANEKKMGWNAQPTRAVIFEDCRVPVENRLGGEGQGFGIAMAGLNGGRLNIASCSL 245 (375)
T ss_pred ecCC-CCCceEEEEEeCCCCCeecCCcccccCCCCCCeeEEEECceEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 7643 335688999999999999999999999999999999999999999999999999998877788899999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHHHHHHH
Q psy1215 167 GIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQP-FTKEAAMAKLAASETATYN 245 (260)
Q Consensus 167 G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~-~~~~~~~~k~~~~~~~~~~ 245 (260)
|.++++++.+++|+++|.+||+++.++|.+|++++++.+++++++++++.+++.+|.+.+ .....+++|.++++.+.++
T Consensus 246 G~a~~al~~~~~~a~~R~~fg~~l~~~~~vq~~la~~~~~l~~a~~~~~~a~~~~~~~~~~~~~~~~~ak~~~~~~a~~~ 325 (375)
T cd01162 246 GAAQAALDLARAYLEERKQFGKPLADFQALQFKLADMATELVASRLMVRRAASALDRGDPDAVKLCAMAKRFATDECFDV 325 (375)
T ss_pred HHHHHHHHHHHHHHHhhhccCccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988643 3456788999999999999
Q ss_pred HHHHHHccCCCCcC
Q psy1215 246 AHQAIQIPIITKYL 259 (260)
Q Consensus 246 ~~~~~~~~Gg~g~~ 259 (260)
++.+++++||.||+
T Consensus 326 ~~~~~~~~Gg~g~~ 339 (375)
T cd01162 326 ANQALQLHGGYGYL 339 (375)
T ss_pred HHHHHHHhcccccc
Confidence 99999999999996
No 9
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1e-46 Score=327.68 Aligned_cols=258 Identities=27% Similarity=0.437 Sum_probs=234.1
Q ss_pred CHHHHHHHHHhccc-CchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc------------------------------
Q psy1215 1 MLYKTVRDFTEGEL-KPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------ 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------ 49 (260)
+|++.+++|+++.+ .+...+.|+.+++|.+.|+.|++.||+++.+|++|
T Consensus 11 ~~~~~~r~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~~~la~~~~s~~~~~~~ 90 (380)
T PRK03354 11 LFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQL 90 (380)
T ss_pred HHHHHHHHHHHhccCChhHHHHHhhCCCCHHHHHHHHHCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCcchHHHHHh
Confidence 47899999998775 56667788888999999999999999999999988
Q ss_pred -------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEEE
Q psy1215 50 -------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFAT 86 (260)
Q Consensus 50 -------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~ 86 (260)
.++.|++++++|||+|||+|.|+|++.++|+++|+++
T Consensus 91 ~~~~~~l~~~g~~e~~~~~l~~~~~g~~~~~~a~tE~~~gs~~~~~~t~a~~~~~g~~lnG~K~fis~~~~ad~~~v~a~ 170 (380)
T PRK03354 91 PGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSAYTPYIVVMAR 170 (380)
T ss_pred cccHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCchhhCEEEEEEeCCEEEEeeEEEEEcCCCcCCEEEEEEE
Confidence 1345678889999999999999999999999999999
Q ss_pred eCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHHH
Q psy1215 87 TDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQAL 166 (260)
Q Consensus 87 ~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~~ 166 (260)
++++++...+++|+||++.||+++ .+|+++||++++++++.|+||+||.++++|.++.|+......+...|+.+++.++
T Consensus 171 ~~~~~~~~~~~~~lv~~~~~gv~~-~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~~~aa~~~ 249 (380)
T PRK03354 171 DGASPDKPVYTEWFVDMSKPGIKV-TKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNY 249 (380)
T ss_pred cCCCCCCCceeEEEEECCCCceEe-ccccccCCCCCCeEEEEEccEEecHHHcCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 854333446788999999999998 5899999999999999999999999999999888987766777888999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHH
Q psy1215 167 GIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYNA 246 (260)
Q Consensus 167 G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 246 (260)
|+++++++.+++|+++|.+||+++.++|.+|++++++...++++++++++++...|.+.......+++|.++++.+.+++
T Consensus 250 G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~~~aK~~~~~~a~~~~ 329 (380)
T PRK03354 250 GTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVV 329 (380)
T ss_pred HHHHHHHHHHHHHHHhhhccCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888765556778999999999999999
Q ss_pred HHHHHccCCCCcC
Q psy1215 247 HQAIQIPIITKYL 259 (260)
Q Consensus 247 ~~~~~~~Gg~g~~ 259 (260)
+.+++++||.||.
T Consensus 330 ~~~~~~~Gg~g~~ 342 (380)
T PRK03354 330 DSAMQVLGGVGIA 342 (380)
T ss_pred HHHHHHhcCceec
Confidence 9999999999986
No 10
>PRK12341 putative acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=1e-46 Score=327.83 Aligned_cols=258 Identities=29% Similarity=0.473 Sum_probs=237.3
Q ss_pred CHHHHHHHHHhcccC-chhhhhhhcCCCCHHHHHHHHHcCCccccCcccc------------------------------
Q psy1215 1 MLYKTVRDFTEGELK-PIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------ 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------ 49 (260)
++++.++.|+++.+. +.+.++|+++++|.++|+.|++.||+++.+|++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~~~GG~g~~~~~~~~~~e~la~~~~~~~~~~~~ 90 (381)
T PRK12341 11 LLLASIRELITRNFPEEYFRTCDENGTYPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSKCGAPAFLITNG 90 (381)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHhCCCCHHHHHHHHHCCCCCcCCChhhCCCCcCHHHHHHHHHHHhhcChhHHHHhhh
Confidence 368899999988875 4677888889999999999999999999999988
Q ss_pred -------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEEE
Q psy1215 50 -------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFAT 86 (260)
Q Consensus 50 -------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~ 86 (260)
..+.+++++++|||+|||+|.|+||+..+|+++|+++
T Consensus 91 ~~~~~l~~~g~~~q~~~~l~~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~~~gg~~lnG~K~~is~~~~Ad~~~v~a~ 170 (381)
T PRK12341 91 QCIHSMRRFGSAEQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFITGAKEYPYMLVLAR 170 (381)
T ss_pred hhHHHHHHhCCHHHHHHHhHHHhhCCCeEEEEEecCCCCCCchhhCeeEEEEeCCEEEEEeEEEEEcCCccCCEEEEEEE
Confidence 2346788889999999999999999999999999999
Q ss_pred eCCCC-CCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHH
Q psy1215 87 TDKSK-KHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQA 165 (260)
Q Consensus 87 ~~~~~-~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~ 165 (260)
.++++ +..++++|+||+++|||++ .+|+.+|+++++++++.|+||+||++++||.++.|+......+...|+.+++++
T Consensus 171 ~~~~~~~~~~~~~~lV~~~~~gv~~-~~~~~~G~~~~~~~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~aa~~ 249 (381)
T PRK12341 171 DPQPKDPKKAFTLWWVDSSKPGIKI-NPLHKIGWHMLSTCEVYLDNVEVEESDLVGEEGMGFLNVMYNFEMERLINAARS 249 (381)
T ss_pred cCCCCCCCCceEEEEEeCCCCceee-cccccccCCCCCceEEEECcEEecHHHcCCCCChHHHHHHHHHHhHHHHHHHHH
Confidence 86542 3457899999999999999 689999999999999999999999999999999999887778889999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHH
Q psy1215 166 LGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYN 245 (260)
Q Consensus 166 ~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 245 (260)
+|+++++++.+++|+++|.+||+|+.++|.||++++++.++++++|++++.++...|.+.+.....+++|.++++.+.++
T Consensus 250 lG~a~~al~~~~~~~~~R~~~g~~i~~~~~v~~~la~~~~~~~aar~~~~~a~~~~d~~~~~~~~~~~aK~~~~~~a~~v 329 (381)
T PRK12341 250 LGFAECAFEDAARYANQRIQFGKPIGHNQLIQEKLTLMAIKIENMRNMVYKVAWQADNGQSLRTSAALAKLYCARTAMEV 329 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhCCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988887666677899999999999999
Q ss_pred HHHHHHccCCCCcC
Q psy1215 246 AHQAIQIPIITKYL 259 (260)
Q Consensus 246 ~~~~~~~~Gg~g~~ 259 (260)
++.+++++||.||.
T Consensus 330 ~~~~~~~~Gg~g~~ 343 (381)
T PRK12341 330 IDDAIQIMGGLGYT 343 (381)
T ss_pred HHHHHHHhcCcccC
Confidence 99999999999996
No 11
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=9e-47 Score=327.19 Aligned_cols=256 Identities=25% Similarity=0.398 Sum_probs=229.6
Q ss_pred CHHHHHHHHHhcccCchhh--hhhhcCCCCHHHHHHHHHcCCccccCcccc-----------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAA--KLDREHLYPKEQIKKMGELGLMGVEVPEDL----------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~----------------------------- 49 (260)
++++.+++|+++.+.|... ..|+.+.+|.++|++|.+.||+++.+|++|
T Consensus 10 ~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~e~G~~~l~vPe~~GG~G~~~~~~~~v~eel~~~~~~~~~~~~ 89 (378)
T TIGR03203 10 LLKESVEGLLKTSYDFDSRKKYQKEKGGWSKAVWGKLAEQGLLGLPFSEADGGFGAGSVETMIVMEALGKALVLEPYLAT 89 (378)
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHhccCCCCHHHHHHHHHCCCcccccchhcCCCCCCHHHHHHHHHHHhCcccchHHHHH
Confidence 4789999999988877543 246778899999999999999999999988
Q ss_pred --------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEE
Q psy1215 50 --------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFA 85 (260)
Q Consensus 50 --------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a 85 (260)
.++.|++++++|+|+|||+|.|||+++.+|+++|.+
T Consensus 90 ~~~~~~~l~~~g~~~qk~~~L~~l~~G~~~~a~a~tEp~~gsd~~~~~t~a~~~g~~~~l~G~K~~vt~a~~Ad~~lv~a 169 (378)
T TIGR03203 90 VVIGGGFLRHAGSAAQKAAHLPGIIDGSKTFAFAQLEKNSRYDLGDVSTTAKKTGDGWVIDGEKFVVLNGETADTLIVTA 169 (378)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhCCChhheeeecCCCCCCCcccceEEEEEcCCEEEEEeEEEEecCCccCCEEEEEE
Confidence 235678999999999999999999999999999999
Q ss_pred EeCCCC-CCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHH
Q psy1215 86 TTDKSK-KHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQ 164 (260)
Q Consensus 86 ~~~~~~-~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~ 164 (260)
+++++. +.+++++|+||++.|||++.+.+..+|+ +++++.||||+||.+++||.+++|+..+...+...|+.+++.
T Consensus 170 r~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~g~---~~~~l~fd~v~vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~ 246 (378)
T TIGR03203 170 RTKGARRDRTGIGVFLVPAGAKGVTIKGYPTQDGL---HAADITFTGVVVGADAAIGDPENALPLIERVVDDARAALCAE 246 (378)
T ss_pred ecCCCCCCCCceEEEEEECCCCCceeccccccCCC---ceeeEEECCCcccHHhhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 986432 3467899999999999999665666665 568999999999999999999999999989999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CchhHHHHHHHHHHHHH
Q psy1215 165 ALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQ--PFTKEAAMAKLAASETA 242 (260)
Q Consensus 165 ~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~--~~~~~~~~~k~~~~~~~ 242 (260)
++|+++++++.+++|+++|.+||+||.++|.||+++++|...++++|++++.++...|.+. +....++++|+++++.+
T Consensus 247 ~~G~a~~al~~a~~ya~~R~qFG~pi~~~Q~vq~~lAdm~~~~e~ar~l~~~aa~~~~~~~~~~~~~~~a~aK~~a~e~a 326 (378)
T TIGR03203 247 AVGLMDESLKTTVEYIKTRKQFGVPIGSFQVLQHRAADMFVAVEQARSMAMFATMASDFDDAKERANAIAAAKVQIGKSL 326 (378)
T ss_pred HHHHHHHHHHHHHHHHhcCeecCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998877532 34567899999999999
Q ss_pred HHHHHHHHHccCCCCcC
Q psy1215 243 TYNAHQAIQIPIITKYL 259 (260)
Q Consensus 243 ~~~~~~~~~~~Gg~g~~ 259 (260)
.++++.|+|++||.||.
T Consensus 327 ~~va~~aiqi~Gg~G~t 343 (378)
T TIGR03203 327 KFVGQQSIQLHGGIGMT 343 (378)
T ss_pred HHHHHHHHHhccceeec
Confidence 99999999999999996
No 12
>PLN02519 isovaleryl-CoA dehydrogenase
Probab=100.00 E-value=1.1e-46 Score=329.68 Aligned_cols=259 Identities=39% Similarity=0.596 Sum_probs=238.8
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHH--HHHHHHHcCCccccCcccc-----------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKE--QIKKMGELGLMGVEVPEDL----------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~G~~~~~vp~~~----------------------------- 49 (260)
++++.+++|+++.+.|.+.+.|+.+.+|.+ +|+.|++.||+++.+|++|
T Consensus 32 ~~~~~~~~~~~~~~~~~a~~~d~~~~~p~~~~~~~~l~~~G~~~~~vP~e~GG~g~~~~~~~~v~e~la~~~~s~a~~~~ 111 (404)
T PLN02519 32 QFKESVQQFAQENIAPHAAAIDATNSFPKDVNLWKLMGDFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYG 111 (404)
T ss_pred HHHHHHHHHHHHhCCcchHHHHhcCCCCchHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHhhhcccHHHHHH
Confidence 368899999999999998888988888876 6999999999999999988
Q ss_pred ----------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEE
Q psy1215 50 ----------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVV 83 (260)
Q Consensus 50 ----------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v 83 (260)
..+.+++++++|||+|||+|.|+||++.+|+++|
T Consensus 112 ~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~sEp~~gsd~~~~~t~a~~~~~g~~lnG~K~~vs~a~~ad~~~v 191 (404)
T PLN02519 112 AHSNLCINQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNGPVAQTLVV 191 (404)
T ss_pred hhhhhHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCcCCCcccceEEEEEeCCEEEEEeEEEeecCCCcCCEEEE
Confidence 1255788899999999999999999999999999
Q ss_pred EEEeCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHH
Q psy1215 84 FATTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIAS 163 (260)
Q Consensus 84 ~a~~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a 163 (260)
.++.+++++..++++|+||++.|||++.++|+++|+++++++++.|+||+||++++++.++.|+......+...++.+++
T Consensus 192 ~a~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~G~rgt~s~~v~f~~v~Vp~~~~lg~~~~G~~~~~~~~~~~r~~~aa 271 (404)
T PLN02519 192 YAKTDVAAGSKGITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELVFENCFVPEENVLGQEGKGVYVMMSGLDLERLVLAA 271 (404)
T ss_pred EEEeCCCCCCCeeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEeCeEEecHHHcCCCCCccHHHHHHHHHHHHHHHHH
Confidence 99987544445789999999999999999999999999999999999999999999999989998777788899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH
Q psy1215 164 QALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETAT 243 (260)
Q Consensus 164 ~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 243 (260)
+++|+++++++.+++|+++|.+||+|+.++|.+|++++++.+++++++++++.++..+|.+.........+|.++++.+.
T Consensus 272 ~~lG~a~~al~~a~~~a~~R~~~g~pl~~~~~v~~~la~~~~~l~aar~~~~~aa~~~~~~~~~~~~~~~ak~~~~~~a~ 351 (404)
T PLN02519 272 GPLGLMQACLDVVLPYVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRSYVYSVARDCDNGKVDRKDCAGVILCAAERAT 351 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998876556677889999999999
Q ss_pred HHHHHHHHccCCCCcC
Q psy1215 244 YNAHQAIQIPIITKYL 259 (260)
Q Consensus 244 ~~~~~~~~~~Gg~g~~ 259 (260)
++++.+++++||.||+
T Consensus 352 ~~~~~a~~i~Gg~g~~ 367 (404)
T PLN02519 352 QVALQAIQCLGGNGYI 367 (404)
T ss_pred HHHHHHHHHhCCceec
Confidence 9999999999999986
No 13
>cd01151 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.
Probab=100.00 E-value=1.9e-46 Score=326.71 Aligned_cols=254 Identities=32% Similarity=0.480 Sum_probs=235.2
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.+.|.+.+.++.+.+|.++|++|.+.||+++ +|++|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~-vP~~~GG~g~~~~~~~~v~e~l~~~~~s~~~~~~~~ 97 (386)
T cd01151 19 AIRDTAREFCQEELAPRVLEAYREEKFDRKIIEEMGELGLLGA-TIKGYGCAGLSSVAYGLIAREVERVDSGYRSFMSVQ 97 (386)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHhCCCCHHHHHHHHHCCCCcc-CccccCCCCCCHHHHHHHHHHHHhhChhHHHHHHHH
Confidence 3788999999999999988888888899999999999999999 99988
Q ss_pred --------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEE
Q psy1215 50 --------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFA 85 (260)
Q Consensus 50 --------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a 85 (260)
.++.|+|++++|||+|||+|.|+||+..+|+++|++
T Consensus 98 ~~~~~~~l~~~g~~~~~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~~~~Ad~~lv~a 177 (386)
T cd01151 98 SSLVMLPIYDFGSEEQKQKYLPKLASGELIGCFGLTEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSPIADVFVVWA 177 (386)
T ss_pred HhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeEEEEEECCEEEEEEEEEeecCCCcCCEEEEEE
Confidence 234468999999999999999999999999999999
Q ss_pred EeCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHH
Q psy1215 86 TTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQA 165 (260)
Q Consensus 86 ~~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~ 165 (260)
+++++ +++.+|+||++.|||++.+.|+++|+++++++++.|+||+||.+++++. +.|+......+...|+.+++++
T Consensus 178 r~~~~---~~~~~flVp~~~~gv~i~~~~~~~G~~g~~s~~v~f~~v~Vp~~~~l~~-~~g~~~~~~~~~~~r~~~aa~~ 253 (386)
T cd01151 178 RNDET---GKIRGFILERGMKGLSAPKIQGKFSLRASITGEIVMDNVFVPEENLLPG-AEGLRGPFKCLNNARYGIAWGA 253 (386)
T ss_pred EECCC---CcEEEEEEcCCCCCeecCCCCCCcCCCCCceeEEEEccEEeCHHHcCCc-cccHHHHHHHHHHHHHHHHHHH
Confidence 98642 4678999999999999999999999999999999999999999999986 4688877778889999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHH
Q psy1215 166 LGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYN 245 (260)
Q Consensus 166 ~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 245 (260)
+|+++++++.+++|+++|.+||+++.++|.+|++++++.+.++++|++++.++...|.+.......+++|.++++.+.++
T Consensus 254 lG~a~~al~~a~~~a~~R~~~g~~i~~~q~vq~~la~~~~~~eaar~l~~~a~~~~d~~~~~~~~~~~~K~~~~~~a~~~ 333 (386)
T cd01151 254 LGAAEDCYHTARQYVLDRKQFGRPLAAFQLVQKKLADMLTEIALGLLACLRVGRLKDQGKATPEQISLLKRNNCGKALEI 333 (386)
T ss_pred HHHHHHHHHHHHHHHHhCeecCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999887656677899999999999999
Q ss_pred HHHHHHccCCCCcC
Q psy1215 246 AHQAIQIPIITKYL 259 (260)
Q Consensus 246 ~~~~~~~~Gg~g~~ 259 (260)
++.++|++||.||.
T Consensus 334 ~~~a~~~~Gg~g~~ 347 (386)
T cd01151 334 ARTAREMLGGNGIS 347 (386)
T ss_pred HHHHHHHhcCCccC
Confidence 99999999999996
No 14
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.
Probab=100.00 E-value=5.3e-46 Score=322.83 Aligned_cols=259 Identities=59% Similarity=0.875 Sum_probs=240.3
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+.+.+.+++.+.|+++.+|.+.|+.|++.||+++.+|++|
T Consensus 5 ~~~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~e~GG~g~~~~~~~~v~~~l~~~~~s~~~~~~~~ 84 (373)
T cd01158 5 MIRKTVRDFAEKEIAPLAAEMDEKGEFPREVIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEELAKVDASVAVIVSVH 84 (373)
T ss_pred HHHHHHHHHHHHhcccchHHHhhcCCCCHHHHHHHHhCCCCcccCCHHHCCCCCCHHHHHHHHHHHHhhCccHHHHHHHH
Confidence 3788999999988999888889988999999999999999999999998
Q ss_pred --------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEE
Q psy1215 50 --------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFA 85 (260)
Q Consensus 50 --------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a 85 (260)
..+.++++++++||+|||+|.|+||+.++|+++|.+
T Consensus 85 ~~~~~~~l~~~~~~~~~~~~l~~~~~G~~~~~~a~se~~~gs~~~~~~~~a~~~~~g~~l~G~k~~vsg~~~ad~~lv~a 164 (373)
T cd01158 85 NSLGANPIIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYIVFA 164 (373)
T ss_pred HhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCHHHCEeEEEEeCCEEEEeeEEEEEcCCCcCCEEEEEE
Confidence 124678899999999999999999999999999999
Q ss_pred EeCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHH
Q psy1215 86 TTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQA 165 (260)
Q Consensus 86 ~~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~ 165 (260)
+.+++++..++++|+||.+.|||++.++|+.+||++++++++.|+||+||++++|+.++.|+......+...|+.+++++
T Consensus 165 ~~~~~~~~~~~~~~lvp~~~~gv~i~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~~a~~ 244 (373)
T cd01158 165 VTDPSKGYRGITAFIVERDTPGLSVGKKEDKLGIRGSSTTELIFEDVRVPKENILGEEGEGFKIAMQTLDGGRIGIAAQA 244 (373)
T ss_pred EcCCCCCCCceEEEEEcCCCCCeecCCcccccccCCCCceEEEeCcEEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 87654344578999999999999999999999999999999999999999999999998899888788889999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHH
Q psy1215 166 LGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYN 245 (260)
Q Consensus 166 ~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 245 (260)
+|+++++++.+++|+++|.+||.++.++|.+|++++++.+.+++++++++.++..++.+.+.....+++|.++++.+.++
T Consensus 245 lG~a~~~l~~~~~~~~~R~~~g~~~~~~~~v~~~la~~~~~l~aa~~~~~~aa~~~~~~~~~~~~~~~~k~~~~~~a~~~ 324 (373)
T cd01158 245 LGIAQAALDAAVDYAKERKQFGKPIADFQGIQFKLADMATEIEAARLLTYKAARLKDNGEPFIKEAAMAKLFASEVAMRV 324 (373)
T ss_pred HHHHHHHHHHHHHHHHhCcccCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998876666678899999999999999
Q ss_pred HHHHHHccCCCCcC
Q psy1215 246 AHQAIQIPIITKYL 259 (260)
Q Consensus 246 ~~~~~~~~Gg~g~~ 259 (260)
++.+++++||.||.
T Consensus 325 ~~~~~~~~G~~g~~ 338 (373)
T cd01158 325 TTDAVQIFGGYGYT 338 (373)
T ss_pred HHHHHHhhcCccCC
Confidence 99999999999985
No 15
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=8.6e-46 Score=324.70 Aligned_cols=254 Identities=38% Similarity=0.543 Sum_probs=234.4
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.+.|.+.+.|+++++|.++|+.|++.||+++.+|++|
T Consensus 43 ~l~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~ 122 (410)
T PTZ00461 43 ALRETVAKFSREVVDKHAREDDINMHFNRDLFKQLGDLGVMGVTVPEADGGAGMDAVAAVIIHHELSKYDPGFCLAYLAH 122 (410)
T ss_pred HHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCcccCChhhCCCCCCHHHHHHHHHHHHhhCchHHHHHHhh
Confidence 3688999999999999998889888999999999999999999999988
Q ss_pred --------------------------------------------cccccEEEEeC-CeEEEeeeeeeeeCCCCCcEEEEE
Q psy1215 50 --------------------------------------------GAASTVAKQDS-NGWTLNGTKAWITNGYESEATVVF 84 (260)
Q Consensus 50 --------------------------------------------~~~~~~a~~~~-~g~~l~G~k~~~s~~~~a~~~~v~ 84 (260)
..+.|++++++ |||+|||+|.|+||+..+|+++|.
T Consensus 123 ~~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~~gg~~L~G~K~~vs~a~~Ad~~lv~ 202 (410)
T PTZ00461 123 SMLFVNNFYYSASPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDSNGNYVLNGSKIWITNGTVADVFLIY 202 (410)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChHHCeEEEEEcCCCeEEEEeEEEeECCCccCCEEEEE
Confidence 12456788875 479999999999999999999999
Q ss_pred EEeCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHH
Q psy1215 85 ATTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQ 164 (260)
Q Consensus 85 a~~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~ 164 (260)
+++++ ++++|+||+++|||++.++|+.+|+++++++++.|+||+||++++|+.++.|+......+...|+.++++
T Consensus 203 a~~~~-----~~~~flVp~~~~Gv~v~~~~~~~G~r~~~~~~l~f~~v~Vp~~~~lg~~g~g~~~~~~~~~~~r~~~aa~ 277 (410)
T PTZ00461 203 AKVDG-----KITAFVVERGTKGFTQGPKIDKCGMRASHMCQLFFEDVVVPAENLLGEEGKGMVGMMRNLELERVTLAAM 277 (410)
T ss_pred EEeCC-----ceEEEEEeCCCCCeecCCCCcccCCCCCceEEEEEcceecCHHHhCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 98742 4789999999999999999999999999999999999999999999999999888777889999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Q psy1215 165 ALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATY 244 (260)
Q Consensus 165 ~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 244 (260)
++|+++++++.+++|+++|.+||+++.++|.+|++++++...++++|++++.++...+.+........++|.++++.+.+
T Consensus 278 ~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~~~~~~~~~aK~~a~~~a~~ 357 (410)
T PTZ00461 278 AVGIAERSVELMTSYASERKAFGKPISNFGQIQRYIAEGYADTEAAKALVYSVSHNVHPGNKNRLGSDAAKLFATPIAKK 357 (410)
T ss_pred HHHHHHHHHHHHHHHHHhCeecCcCHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988877655556778899999999999
Q ss_pred HHHHHHHccCCCCcC
Q psy1215 245 NAHQAIQIPIITKYL 259 (260)
Q Consensus 245 ~~~~~~~~~Gg~g~~ 259 (260)
+++.++|++||.||.
T Consensus 358 v~~~a~qv~Gg~G~~ 372 (410)
T PTZ00461 358 VADSAIQVMGGMGYS 372 (410)
T ss_pred HHHHHHHHhcCcccC
Confidence 999999999999996
No 16
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2. FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=7.3e-45 Score=317.51 Aligned_cols=259 Identities=26% Similarity=0.369 Sum_probs=230.8
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcC-------CCC----HHHHHHHHHcCCccccCcccc--------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREH-------LYP----KEQIKKMGELGLMGVEVPEDL-------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~l~~~G~~~~~vp~~~-------------------- 49 (260)
++++++++|+++.+.|.+.++++.+ .+| +++|+.+++.||+++.+|++|
T Consensus 5 ~~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~P~~~GG~g~~~~~~~~v~e~l~~~ 84 (394)
T cd01155 5 ELRARVKAFMEEHVYPAEQEFLEYYAEGGDRWWTPPPIIEKLKAKAKAEGLWNLFLPEVSGLSGLTNLEYAYLAEETGRS 84 (394)
T ss_pred HHHHHHHHHHHHhcCccHHHHHhhcccccccccCCchhHHHHHHHHHhCCCCCCCCChhhCCCCcCHHHHHHHHHHHhhh
Confidence 4789999999999999877776431 134 688999999999999999988
Q ss_pred ---------------------------------------------------------cccccEEEEeCCeEEEeeeeeee
Q psy1215 50 ---------------------------------------------------------GAASTVAKQDSNGWTLNGTKAWI 72 (260)
Q Consensus 50 ---------------------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~ 72 (260)
..+.|++++++|||+|||+|.|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tE~~~~gsd~~~~~t~a~~~~~g~~LnG~k~~v 164 (394)
T cd01155 85 FFAPEVFNCQAPDTGNMEVLHRYGSEEQKKQWLEPLLDGKIRSAFAMTEPDVASSDATNIECSIERDGDDYVINGRKWWS 164 (394)
T ss_pred cccchheeecccccccHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCCCchhhCEEEEEEECCEEEEEEEEEEE
Confidence 12357889999999999999999
Q ss_pred eCCCC--CcEEEEEEEeCCCC--CCCceEEEEEeCCCCCeeecccCCcccCCC--CCeeeEEEeceeeCCCCccCCCCcc
Q psy1215 73 TNGYE--SEATVVFATTDKSK--KHKGISAFIVDKPTKGLSLGKKEDKLGINA--SSTCSLIFEDCSIPAENLLGEPGMG 146 (260)
Q Consensus 73 s~~~~--a~~~~v~a~~~~~~--~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~--~~~~~~~f~~v~Vp~~~vl~~~~~g 146 (260)
||+.+ +|+++|++++++++ +..++++|+||+++||+++.++|+++|+++ ++++++.|+||+||++++|+.++.|
T Consensus 165 s~~~~~~a~~~~v~a~~~~~~~~~~~~~~~flVp~~~~Gv~i~~~~~~~G~r~~~t~s~~v~f~dv~Vp~~~~lg~~~~g 244 (394)
T cd01155 165 SGAGDPRCKIAIVMGRTDPDGAPRHRQQSMILVPMDTPGVTIIRPLSVFGYDDAPHGHAEITFDNVRVPASNLILGEGRG 244 (394)
T ss_pred cCCCCCCCCEEEEEEEeCCCcCCCCCceEEEEEeCCCCCeEeeccccccCCCCCCCCeeEEEEccEEecHHHcCCCCChH
Confidence 99965 78999999876432 235789999999999999988999999997 6789999999999999999998899
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-
Q psy1215 147 FKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQ- 225 (260)
Q Consensus 147 ~~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~- 225 (260)
+......+...|+..+++++|+++++++.+++|+++|.+||+++.++|.+|++++++.+.++++|++++.++...+.+.
T Consensus 245 ~~~~~~~~~~~r~~~~a~~lG~a~~al~~~~~~~~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~l~~~aa~~~~~~~~ 324 (394)
T cd01155 245 FEIAQGRLGPGRIHHCMRLIGAAERALELMCQRAVSREAFGKKLAQHGVVAHWIAKSRIEIEQARLLVLKAAHMIDTVGN 324 (394)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9888888889999999999999999999999999999999999999999999999999999999999999999888743
Q ss_pred -CchhHHHHHHHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 226 -PFTKEAAMAKLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 226 -~~~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
......+++|.++++.+.++++.+++++||.||.
T Consensus 325 ~~~~~~~~~aK~~~~~~a~~~~~~a~~~~Gg~g~~ 359 (394)
T cd01155 325 KAARKEIAMIKVAAPRMALKIIDRAIQVHGAAGVS 359 (394)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcCceec
Confidence 2457789999999999999999999999999986
No 17
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase. VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.
Probab=100.00 E-value=1.2e-44 Score=317.54 Aligned_cols=257 Identities=36% Similarity=0.562 Sum_probs=233.2
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.+.|. ++++.+++|.++|+.|++.||+++.+|++|
T Consensus 33 ~l~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~v~e~l~~~~~~~~~~~~~~ 110 (409)
T cd01161 33 MLVGPVEKFFEEVNDPA--KNDQLEKIPRKTLTQLKELGLFGLQVPEEYGGLGLNNTQYARLAEIVGMDLGFSVTLGAHQ 110 (409)
T ss_pred HHHHHHHHHHHHhCCch--hhccccCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHhhChHHHHHHHHhh
Confidence 37899999999998884 467778899999999999999999999988
Q ss_pred -------------------------------------------cccccEEEEe--CCeEEEeeeeeeeeCCCCCcEEEEE
Q psy1215 50 -------------------------------------------GAASTVAKQD--SNGWTLNGTKAWITNGYESEATVVF 84 (260)
Q Consensus 50 -------------------------------------------~~~~~~a~~~--~~g~~l~G~k~~~s~~~~a~~~~v~ 84 (260)
.++.++++++ ++||+|||+|.|+||+..||+++|.
T Consensus 111 ~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gs~~~~~~t~a~~~~~g~g~~l~G~K~~vs~~~~Ad~~lv~ 190 (409)
T cd01161 111 SIGFKGILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWITNGGIADIFTVF 190 (409)
T ss_pred hhhHHHHHHcCCHHHHHHHhHHHhCCCeeEEEEecCCCCCCChhhCeeEEEEcCCCCEEEEEeEEEeecCCCcCCEEEEE
Confidence 1345778774 5579999999999999999999999
Q ss_pred EEeCC--CCC--CCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHH
Q psy1215 85 ATTDK--SKK--HKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIG 160 (260)
Q Consensus 85 a~~~~--~~~--~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~ 160 (260)
+++++ +++ .+++++|+||++.|||++.++|+++|+++++++++.|+||+||.+++|+.+++|+......+...|+.
T Consensus 191 ar~~~~~~~g~~~~~~~~flvp~~~~gv~~~~~~~~~G~~g~~s~~v~~~~v~Vp~~~~lg~~g~g~~~~~~~l~~~r~~ 270 (409)
T cd01161 191 AKTEVKDATGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVYFEDVKIPVENVLGEVGDGFKVAMNILNNGRFG 270 (409)
T ss_pred EEcCCCCCCCCCCCceEEEEEeCCCCCcccCCcccccCCCCCCceEEEeccEEECHHHcCCCCChHHHHHHHHHHhHHHH
Confidence 99862 111 35688999999999999999999999999999999999999999999999999998888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CchhHHHHHHHHH
Q psy1215 161 IASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQ--PFTKEAAMAKLAA 238 (260)
Q Consensus 161 ~~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~--~~~~~~~~~k~~~ 238 (260)
+++.++|+++++++.+++|+++|.+||+++.++|.+|++++++.+.++++|++++.+++..|.+. +.....+++|.++
T Consensus 271 ~aa~~lG~a~~al~~a~~~a~~R~~fg~~l~~~q~vq~~la~~~~~~~aar~l~~~a~~~~d~~~~~~~~~~~~~aK~~a 350 (409)
T cd01161 271 MGAALIGTMKRCIEKAVDYANNRKQFGKKIHEFGLIQEKLANMAILQYATESMAYMTSGNMDRGLKAEYQIEAAISKVFA 350 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhceeCCccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888765 3456789999999
Q ss_pred HHHHHHHHHHHHHccCCCCcC
Q psy1215 239 SETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 239 ~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
++.+.++++.+++++||.||.
T Consensus 351 ~~~a~~v~~~a~~~~Gg~G~~ 371 (409)
T cd01161 351 SEAAWLVVDEAIQIHGGMGFM 371 (409)
T ss_pred HHHHHHHHHHHHHHhcCcccc
Confidence 999999999999999999995
No 18
>PLN02526 acyl-coenzyme A oxidase
Probab=100.00 E-value=3.7e-44 Score=314.35 Aligned_cols=254 Identities=27% Similarity=0.425 Sum_probs=231.6
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.+.|.+.+.++...+|.++|++|.+.||+++.+ ++|
T Consensus 35 ~l~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~v-~~~GG~G~~~~~~~~~~e~la~~~~s~~~~~~~~ 113 (412)
T PLN02526 35 ALRKRVRECMEKEVAPIMTEYWEKAEFPFHIIPKLGSLGIAGGTI-KGYGCPGLSITASAIATAEVARVDASCSTFILVH 113 (412)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhCCCCHHHHHHHHHCCCCcCcc-cccCCCCcCHHHHHHHHHHHHhhCchHHHHHHHh
Confidence 378899999999998887777777789999999999999999999 777
Q ss_pred --------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEE
Q psy1215 50 --------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFA 85 (260)
Q Consensus 50 --------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a 85 (260)
.++.|++++++|||+|||+|.|+||+..+|++++.+
T Consensus 114 ~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~Gsd~~~~~t~a~~~~gg~~lnG~K~~vs~~~~Ad~~lv~a 193 (412)
T PLN02526 114 SSLAMLTIALCGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGWILNGQKRWIGNSTFADVLVIFA 193 (412)
T ss_pred hhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEEEEeeecCCCccCEEEEEE
Confidence 134578899999999999999999999999999999
Q ss_pred EeCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHH
Q psy1215 86 TTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQA 165 (260)
Q Consensus 86 ~~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~ 165 (260)
+++++ +++++|+||+++|||++.++|+++|+++++++++.|+||+||++++|+..+ ++......+...|+.+++.+
T Consensus 194 ~~~~~---~~~~~flV~~~~~Gv~~~~~~~~~G~r~t~s~~v~f~~v~Vp~~~~l~~~~-~~~~~~~~~~~~r~~~aa~~ 269 (412)
T PLN02526 194 RNTTT---NQINGFIVKKGAPGLKATKIENKIGLRMVQNGDIVLKDVFVPDEDRLPGVN-SFQDTNKVLAVSRVMVAWQP 269 (412)
T ss_pred EeCCC---CCeEEEEEcCCCCCeEcCCCCCccCcCCCCeeEEEEeeEEECHHHhCCCcc-cHHHHHHHHHHHHHHHHHHH
Confidence 98642 357899999999999999999999999999999999999999999997654 67766678899999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHH
Q psy1215 166 LGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYN 245 (260)
Q Consensus 166 ~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 245 (260)
+|+++++++.+++|+++|.+||+++.++|.+|++++++.++++++|++++++++.+|.+.+......++|.++++.+.++
T Consensus 270 lG~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~aK~~a~~~a~~v 349 (412)
T PLN02526 270 IGISMGVYDMCHRYLKERKQFGAPLAAFQINQEKLVRMLGNIQAMFLVGWRLCKLYESGKMTPGHASLGKAWITKKARET 349 (412)
T ss_pred HHHHHHHHHHHHHHHHhCeeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988876555667889999999999999
Q ss_pred HHHHHHccCCCCcC
Q psy1215 246 AHQAIQIPIITKYL 259 (260)
Q Consensus 246 ~~~~~~~~Gg~g~~ 259 (260)
++.+++++||.||.
T Consensus 350 ~~~a~~~~Gg~G~~ 363 (412)
T PLN02526 350 VALGRELLGGNGIL 363 (412)
T ss_pred HHHHHHHhcCcccc
Confidence 99999999999996
No 19
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=1.5e-42 Score=303.09 Aligned_cols=258 Identities=47% Similarity=0.705 Sum_probs=235.1
Q ss_pred HHHHHHHHHhcccCchhhhhhh---cCCCCHHHHHHHHHcCCccccCcccc-----------------------------
Q psy1215 2 LYKTVRDFTEGELKPIAAKLDR---EHLYPKEQIKKMGELGLMGVEVPEDL----------------------------- 49 (260)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~G~~~~~vp~~~----------------------------- 49 (260)
+++.+++|+.+.+.|...+.++ ...+|.+.++++++.|++++.+|++|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~G~~~~~~p~e~GG~~~~~~~~~~~~e~l~~~~~~~~~~~~ 91 (393)
T COG1960 12 LRAEVREFAEEELAPEAAEIDRRIEDERFPRELLRALAEAGLLGLTIPEEYGGLGLSPLEQAAVLEELARADAGGALALG 91 (393)
T ss_pred HHHHHHHHHHHhcCcchhhhhhhcccccCHHHHHHHHHhCCcccCCCChhhCCCCcchhHHHHHHHHHHhhCcchhhhHH
Confidence 6788999999999887777775 57889999999999999999999998
Q ss_pred -------------------------------------------------cccc-cEEEEeCCeEEEeeeeeeeeCCCCCc
Q psy1215 50 -------------------------------------------------GAAS-TVAKQDSNGWTLNGTKAWITNGYESE 79 (260)
Q Consensus 50 -------------------------------------------------~~~~-~~a~~~~~g~~l~G~k~~~s~~~~a~ 79 (260)
.++. |++++.+|+|+|||+|.|+||++.+|
T Consensus 92 ~~~~~~~~~~~~~~~~g~~~q~~~~l~~~~~G~~~~~~~~tEp~~Gsd~~~~~~t~a~~~~g~~~lnG~K~~is~~~~ad 171 (393)
T COG1960 92 LTHGGLGALAPTILRFGTEEQKRRYLPRLASGELIGAFALTEPGAGSDLASLRTTAAVRDDGDYVLNGQKIWISNAPVAD 171 (393)
T ss_pred HhccccccchHHHHHcCCHHHHHHhchhhhCCchhheeeccCCCCCcchhcCceeEEEecCCCEEEEeEEEEEcCCCCCC
Confidence 2233 66777666799999999999999999
Q ss_pred EEEEEEEeCCC-CCCCceEEEEEeCC-CCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhH
Q psy1215 80 ATVVFATTDKS-KKHKGISAFIVDKP-TKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAG 157 (260)
Q Consensus 80 ~~~v~a~~~~~-~~~~~~~~~~v~~~-~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~ 157 (260)
+++|+++++++ .+.+++++|+||++ .||+++.+.|+..|+++++++++.|+||+||.+++||..+.||..+...+...
T Consensus 172 ~~~v~Ar~~~~~~~~~gis~flV~~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~vp~~~lig~~~~g~~~~~~~l~~~ 251 (393)
T COG1960 172 WLLVLARTDPAPGKHKGISLFLVPKDLTPGVSVGPILKKMGLRGSATGEVFFDDVRVPAENLLGEEGDGFKIAMETLNVE 251 (393)
T ss_pred EEEEEEEcCCcccccCceEEEEEeCCCCCCeeeccccCcCCcCCCCeeEEEECCeeccHHHcCCcCCchHHHHHHhhchH
Confidence 99999999865 35678999999999 59999966665449999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q psy1215 158 RIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLA 237 (260)
Q Consensus 158 r~~~~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~ 237 (260)
|+..++.++|+++++++.+.+|+++|++||+++.++|.+|++++++.+++++++.++++++...+........++++|++
T Consensus 252 r~~~aa~~~G~a~~al~~~~~ya~~R~~fg~~i~~~~~vq~~la~~~~~~~a~r~~~~~aa~~~~~~~~~~~~~~~aK~~ 331 (393)
T COG1960 252 RLGIAAQALGIAEAALEEAVAYARERKQFGRPIADFQLVQFKLADMAAELEAARLLVLRAAELADAGDDAGAEAAMAKLF 331 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888765444789999999
Q ss_pred HHHHHHHHHHHHHHccCCCCcC
Q psy1215 238 ASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 238 ~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
+++.+.++++.++|++||.||+
T Consensus 332 a~~~~~~~~~~a~q~~Gg~g~~ 353 (393)
T COG1960 332 ATEAALEVADEAVQVHGGYGYT 353 (393)
T ss_pred HHHHHHHHHHHHHHHhcCCccc
Confidence 9999999999999999999996
No 20
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=4.2e-42 Score=301.15 Aligned_cols=255 Identities=30% Similarity=0.469 Sum_probs=226.2
Q ss_pred HHHHHHHHHhcccCchhhhhhhcCC--------CC---HHHHHHHHHcCCccccCcccc---------------------
Q psy1215 2 LYKTVRDFTEGELKPIAAKLDREHL--------YP---KEQIKKMGELGLMGVEVPEDL--------------------- 49 (260)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~~~~~~l~~~G~~~~~vp~~~--------------------- 49 (260)
+++.+++|+.+.+.|.+.+.|++.. || .++|++|++.||+++.+|++|
T Consensus 1 ~~~~~~~~~~~~~~~~a~~~d~~~~~~~~~~~~~p~~~~e~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~l~~~~ 80 (407)
T cd01153 1 VLEEVARLAENVLAPLNADGDREGPVFDDGRVVVPPPFKEALDAFAEAGWMALGVPEEYGGQGLPITVYSALAEIFSRGD 80 (407)
T ss_pred ChHHHHHHHHHHhhhhHHhHhccCCcccCCceEcChhHHHHHHHHHHCCCCCCCCccccCCCCCCHHHHHHHHHHHHhhh
Confidence 4789999999999999888887654 88 678999999999999999998
Q ss_pred ----------------------------------------------------cccccEEEEe-CCeEEEeeeeeeeeCCC
Q psy1215 50 ----------------------------------------------------GAASTVAKQD-SNGWTLNGTKAWITNGY 76 (260)
Q Consensus 50 ----------------------------------------------------~~~~~~a~~~-~~g~~l~G~k~~~s~~~ 76 (260)
..+.|+++++ +|||+|||+|.|+||+.
T Consensus 81 ~s~~~~~~~~~~~~~l~~~g~~~~~~~~l~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~~~ggy~l~G~K~~is~~~ 160 (407)
T cd01153 81 APLMYASGTQGAAATLLAHGTEAQREKWIPRLAEGEWTGTMCLTEPDAGSDLGALRTKAVYQADGSWRINGVKRFISAGE 160 (407)
T ss_pred HHHHHHHHHhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCCcccceEEEEECCCCcEEEeeEEEEEeCCC
Confidence 1345778887 56899999999999998
Q ss_pred CC----cEEEEEEEeCCC-CCCCceEEEEEeCCC-----CCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCcc
Q psy1215 77 ES----EATVVFATTDKS-KKHKGISAFIVDKPT-----KGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMG 146 (260)
Q Consensus 77 ~a----~~~~v~a~~~~~-~~~~~~~~~~v~~~~-----~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g 146 (260)
++ ++++|+++++++ ++..++.+|+||++. |||++.++|+++|+++++++++.|+||+|| +|+.++.|
T Consensus 161 ~a~~~~~~~~v~a~~~~~~~~~~~~~~flVp~~~~~~~~~gv~i~~~~~~~G~r~t~s~~v~f~~v~Vp---~lg~~~~g 237 (407)
T cd01153 161 HDMSENIVHLVLARSEGAPPGVKGLSLFLVPKFLDDGERNGVTVARIEEKMGLHGSPTCELVFDNAKGE---LIGEEGMG 237 (407)
T ss_pred cccccccEEEEEEeCCCCCCCCCceEEEEEeccCcCCCCCCeEeccchhccCCCCCCeEEEEEcCEEEe---eeCCCCcc
Confidence 86 578888987642 234568899999987 899999999999999999999999999999 88988899
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCcc--------cccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy1215 147 FKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQP--------IIKLQSIQQKIADMSLKLESARLLTWRAA 218 (260)
Q Consensus 147 ~~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~~~~~r~~~g~~--------l~~~~~v~~~la~~~~~l~~~~a~~~~~~ 218 (260)
+......+...|+.++++++|+++++++.+++|+++|.+||++ +.++|.+|++++++.++++++++++++++
T Consensus 238 ~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~~~~~~~~~~~iq~~la~~~a~~~a~~~~~~~aa 317 (407)
T cd01153 238 LAQMFAMMNGARLGVGTQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAVTIIHHPDVRRSLMTQKAYAEGSRALDLYTA 317 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeecCCcCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888999999999999999999999999999999999998 88999999999999999999999999999
Q ss_pred HHHhCCCCc--------------hhHHHHHHHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 219 YLKDNKQPF--------------TKEAAMAKLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 219 ~~~~~~~~~--------------~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
+.+|..... ....+++|+++++.+.++++.+++++||.||.
T Consensus 318 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~aK~~~~~~a~~v~~~a~~~~Gg~g~~ 372 (407)
T cd01153 318 TVQDLAERKATEGEDRKALSALADLLTPVVKGFGSEAALEAVSDAIQVHGGSGYT 372 (407)
T ss_pred HhccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceec
Confidence 988764311 23456899999999999999999999999985
No 21
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-42 Score=318.81 Aligned_cols=235 Identities=22% Similarity=0.265 Sum_probs=212.3
Q ss_pred cCCCCHHHHHHHHHcCCccccCcccc------------------------------------------------------
Q psy1215 24 EHLYPKEQIKKMGELGLMGVEVPEDL------------------------------------------------------ 49 (260)
Q Consensus 24 ~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------------------------------ 49 (260)
.+.+|+++|+.|++.||+++.+|++|
T Consensus 107 ~~~~P~e~w~~L~e~G~~gl~IPeeyGG~Gls~~~~a~v~eeLg~~~~s~a~~~~v~~slg~~~lL~~~GteeQK~~yLp 186 (777)
T PRK09463 107 LADLPPEVWQFIKEHGFFGMIIPKEYGGLEFSAYAHSRVLQKLASRSGTLAVTVMVPNSLGPGELLLHYGTDEQKDHYLP 186 (777)
T ss_pred ccCCCHHHHHHHHHCCCCcCCCchhhCCCCCCHHHHHHHHHHHHhhCcchhHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 36899999999999999999999998
Q ss_pred ----------------------ccccc-----EEEEeCC---eEEEeeeeeeeeCCCCCcEEEEEEEe-CCC-----CCC
Q psy1215 50 ----------------------GAAST-----VAKQDSN---GWTLNGTKAWITNGYESEATVVFATT-DKS-----KKH 93 (260)
Q Consensus 50 ----------------------~~~~~-----~a~~~~~---g~~l~G~k~~~s~~~~a~~~~v~a~~-~~~-----~~~ 93 (260)
.++.| ++.++++ ||+|||+|.|||+++.||+++|++++ +++ ++.
T Consensus 187 ~La~Ge~i~afAlTEP~aGSDaa~i~Tta~~~~a~~dGd~~~g~vLNG~K~~IT~a~~Ad~l~V~ar~~dp~~~~g~~~~ 266 (777)
T PRK09463 187 RLARGEEIPCFALTSPEAGSDAGSIPDTGVVCKGEWQGEEVLGMRLTWNKRYITLAPIATVLGLAFKLYDPDGLLGDKED 266 (777)
T ss_pred HHhCCCceeEEEecCCCcCCCcccccccceeeeeeecCCcccceEEEEEEEeeCCCCccCEEEEEEEecCcccccCCCCC
Confidence 12333 3344555 69999999999999999999999986 332 134
Q ss_pred CceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCC---CccHHHHHHHHhhHh-HHHHHHHHHHH
Q psy1215 94 KGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEP---GMGFKIAMMTLDAGR-IGIASQALGIA 169 (260)
Q Consensus 94 ~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~---~~g~~~~~~~~~~~r-~~~~a~~~G~~ 169 (260)
.++++|+||+++|||++.+.|.++|++ ..++++.|+||+||.+++||.. +.||..+...+..+| +.+++.++|++
T Consensus 267 ~Git~fLVp~d~pGV~ig~~~~~lG~r-~~~g~v~fddV~VP~d~lLG~~~~~G~G~~~l~~~L~~gR~i~laA~avG~a 345 (777)
T PRK09463 267 LGITCALIPTDTPGVEIGRRHFPLNVP-FQNGPTRGKDVFIPLDYIIGGPKMAGQGWRMLMECLSVGRGISLPSNSTGGA 345 (777)
T ss_pred CceEEEEEECCCCCeEecccccccCcc-cccceEEeeeeecCHHHhcccccccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999999998 6789999999999999999974 889999999999999 89999999999
Q ss_pred HHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHH
Q psy1215 170 QASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYNAHQA 249 (260)
Q Consensus 170 ~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 249 (260)
+++++.+.+|+++|++||++|+++|.||+++|+|..++++++++.+.++..+|.+......++++|+++++.+.++++.|
T Consensus 346 r~al~~Av~YA~~R~QFG~pIg~fQaVQ~~LAdma~~~~a~eaar~~~a~~~D~G~~~~~~aA~AK~~atE~a~~va~~A 425 (777)
T PRK09463 346 KLAALATGAYARIRRQFKLPIGKFEGIEEPLARIAGNAYLMDAARTLTTAAVDLGEKPSVLSAIAKYHLTERGRQVINDA 425 (777)
T ss_pred HHHHHHHHHHHHHHHHcCCChhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888876667788999999999999999999
Q ss_pred HHccCCCCcC
Q psy1215 250 IQIPIITKYL 259 (260)
Q Consensus 250 ~~~~Gg~g~~ 259 (260)
+|++||.||+
T Consensus 426 mQIhGG~G~~ 435 (777)
T PRK09463 426 MDIHGGKGIC 435 (777)
T ss_pred HHHhchhhee
Confidence 9999999997
No 22
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.
Probab=100.00 E-value=1.2e-42 Score=302.00 Aligned_cols=249 Identities=22% Similarity=0.286 Sum_probs=217.8
Q ss_pred HHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-----------------------------------
Q psy1215 5 TVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL----------------------------------- 49 (260)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~----------------------------------- 49 (260)
++++++ +.++|++.+.|+++++|.+.|+.|++.||+++.+|++|
T Consensus 2 ~~~~~~-~~~~~~a~~~d~~~~~p~~~~~~l~~~G~~~l~vP~~~GG~g~~~~~~~~~~e~la~~~~s~~~~~~~~~~~~ 80 (377)
T cd01163 2 RARPLA-ARIAEGAAERDRQRGLPYEEVALLRQSGLGTLRVPKEYGGLGASLPDLYEVVRELAAADSNIAQALRAHFGFV 80 (377)
T ss_pred hHHHHH-HHHhhhhhhhhhcCCCCHHHHHHHHHCCCccccCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 456777 46889999999999999999999999999999999988
Q ss_pred --------------------------------c-----ccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEEEeCCCCC
Q psy1215 50 --------------------------------G-----AASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKK 92 (260)
Q Consensus 50 --------------------------------~-----~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~~~~~~~ 92 (260)
. ...+++.++++||+|||+|.|+|++..+|+++|.+++++
T Consensus 81 ~~l~~~g~~~~~~~~l~~~~~g~~~~~a~tE~~~~~~~~~~~~~~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~--- 157 (377)
T cd01163 81 EALLLAGPEQFRKRWFGRVLNGWIFGNAVSERGSVRPGTFLTATVRDGGGYVLNGKKFYSTGALFSDWVTVSALDEE--- 157 (377)
T ss_pred HHHHhcCcHHHHHHHHHHHhCCCeEEEeecCCCCCCCCCceEEEEecCCEEEEeceEEeecCCccceEEEEEEEcCC---
Confidence 1 223446667889999999999999999999999998653
Q ss_pred CCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHHHHHHHHH
Q psy1215 93 HKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALGIAQAS 172 (260)
Q Consensus 93 ~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~~G~~~~~ 172 (260)
++.++|+||.++|||++.++|+.+||++++++++.|+||+||.+++++.++.++. ....+..+++.++++++|+++++
T Consensus 158 -~~~~~~lV~~~~~Gv~i~~~~~~~G~~~~~s~~v~f~~v~Vp~~~~lg~~~~g~~-~~~~~~~~~l~~aa~~lG~a~~a 235 (377)
T cd01163 158 -GKLVFAAVPTDRPGITVVDDWDGFGQRLTASGTVTFDNVRVEPDEVLPRPNAPDR-GTLLTAIYQLVLAAVLAGIARAA 235 (377)
T ss_pred -CcEEEEEEeCCCCceeecCCcccccCccCCcceEEEeeEEECHHHccCCCccccc-cccccHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999988999999999999999999999999999998887764 22334677899999999999999
Q ss_pred HHHHHHHHhhcc-ccCc----ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------------CchhHHHHHH
Q psy1215 173 LDCAVEYASKRT-AFGQ----PIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQ------------PFTKEAAMAK 235 (260)
Q Consensus 173 l~~~~~~~~~r~-~~g~----~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~------------~~~~~~~~~k 235 (260)
++.+++|+++|. ++++ ++.++|.+|++++++.++++++|++++.++..+|.+. ......+++|
T Consensus 236 l~~~~~~~~~R~~~~g~~~~~~~~~~~~v~~~la~~~~~l~aar~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~~~aK 315 (377)
T cd01163 236 LDDAVAYVRSRTRPWIHSGAESARDDPYVQQVVGDLAARLHAAEALVLQAARALDAAAAAGTALTAEARGEAALAVAAAK 315 (377)
T ss_pred HHHHHHHHHhcCCCCCcCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHH
Confidence 999999999995 6665 5789999999999999999999999999999887631 1235677999
Q ss_pred HHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 236 LAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
.++++.+.++++.+++++||.||.
T Consensus 316 ~~~~~~a~~~~~~a~q~~Gg~g~~ 339 (377)
T cd01163 316 VVVTRLALDATSRLFEVGGASATA 339 (377)
T ss_pred HHHHHHHHHHHHHHHHHhCchhhc
Confidence 999999999999999999999986
No 23
>PRK13026 acyl-CoA dehydrogenase; Reviewed
Probab=100.00 E-value=4.5e-42 Score=313.82 Aligned_cols=253 Identities=23% Similarity=0.323 Sum_probs=215.0
Q ss_pred HHHHHHHHhcccCch---hhhh---hhcCCCCHHHHHHHHHcCCccccCcccc---------------------------
Q psy1215 3 YKTVRDFTEGELKPI---AAKL---DREHLYPKEQIKKMGELGLMGVEVPEDL--------------------------- 49 (260)
Q Consensus 3 ~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~l~~~G~~~~~vp~~~--------------------------- 49 (260)
.++-++|+++.+.|. ..+. ++.+.+|.++|+.|++.||+++.+|++|
T Consensus 79 ~~eeq~fl~~~v~~l~~~~~e~~~~~~~~~~P~evw~~Lae~Gl~gl~IPeeyGGlG~s~~~~a~V~eela~~~~s~a~~ 158 (774)
T PRK13026 79 TAEEQAFIDNEVETLLTMLDDWDIVQNRKDLPPEVWDYLKKEGFFALIIPKEYGGKGFSAYANSTIVSKIATRSVSAAVT 158 (774)
T ss_pred CHHHHHHHHHHHHHHHhhhhhhhhhhhhcCCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhccchHHH
Confidence 455566665555443 2233 3467899999999999999999999998
Q ss_pred -------------------------------------------------cccccEE-----EEeCC---eEEEeeeeeee
Q psy1215 50 -------------------------------------------------GAASTVA-----KQDSN---GWTLNGTKAWI 72 (260)
Q Consensus 50 -------------------------------------------------~~~~~~a-----~~~~~---g~~l~G~k~~~ 72 (260)
.++.|++ +++++ ||+|||+|.||
T Consensus 159 ~~v~~slg~~~lL~~~GTeEQK~~yLP~LAsGe~i~afAlTEP~aGSDaasi~Ttav~t~a~~dGd~~~gwvLNG~K~~I 238 (774)
T PRK13026 159 VMVPNSLGPGELLTHYGTQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIVCRGEFEGEEVLGLRLTWDKRYI 238 (774)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHhhhHHHhCCCeEEEEEecCCCCCCchhcccceeeeeeeeecCCccccEEEEEEEEee
Confidence 2234333 34665 69999999999
Q ss_pred eCCCCCcEEEEEEEe-CCC-----CCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCC---
Q psy1215 73 TNGYESEATVVFATT-DKS-----KKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEP--- 143 (260)
Q Consensus 73 s~~~~a~~~~v~a~~-~~~-----~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~--- 143 (260)
|+++.||++++.++. +++ ++..++++|+||+++|||++...|+++|++.. ++++.||||+||.+++||.+
T Consensus 239 T~A~~Ad~~~v~ar~~dpd~~~g~~~~~GiT~fLVp~d~pGV~ig~~~~~lG~~~~-~g~v~fdDV~VP~d~lLG~~~~~ 317 (774)
T PRK13026 239 TLAPVATVLGLAFKLRDPDGLLGDKKELGITCALIPTDHPGVEIGRRHNPLGMAFM-NGTTRGKDVFIPLDWIIGGPDYA 317 (774)
T ss_pred cCccccCEEEEEEEeeCccccccCCCCCceEEEEEECCCCCeEeeccccccccCcc-cceEEEeeeEccHHHhcCCcccC
Confidence 999999999888764 332 13467999999999999999888999999874 58999999999999999975
Q ss_pred CccHHHHHHHHhhHh-HHHHHHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHH---HHHHHHHHHHHHHH
Q psy1215 144 GMGFKIAMMTLDAGR-IGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSL---KLESARLLTWRAAY 219 (260)
Q Consensus 144 ~~g~~~~~~~~~~~r-~~~~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~---~l~~~~a~~~~~~~ 219 (260)
|+||..+...++.+| +.+++.++|+++.+++.+.+|+++|.+||+||+++|.||+++|+|.+ .++++|.+++.++
T Consensus 318 G~G~~~l~~~L~~gR~i~laA~a~G~A~~al~~Av~YA~~R~QFG~pIg~fQ~Vq~~LAdma~~~y~lEaaR~l~~~a~- 396 (774)
T PRK13026 318 GRGWRMLVECLSAGRGISLPALGTASGHMATRTTGAYAYVRRQFGMPIGQFEGVQEALARIAGNTYLLEAARRLTTTGL- 396 (774)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 889999999999999 89999999999999999999999999999999999999999999999 6788888887754
Q ss_pred HHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 220 LKDNKQPFTKEAAMAKLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 220 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
|.+......++++|+++++.+.++++.|||++||.||+
T Consensus 397 --D~G~~~~~~aA~AK~~atE~a~~va~~AmQIhGG~Gy~ 434 (774)
T PRK13026 397 --DLGVKPSVVTAIAKYHMTELARDVVNDAMDIHAGKGIQ 434 (774)
T ss_pred --HCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhchheee
Confidence 55544567889999999999999999999999999996
No 24
>cd01159 NcnH Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.
Probab=100.00 E-value=1.5e-42 Score=300.67 Aligned_cols=252 Identities=17% Similarity=0.192 Sum_probs=219.3
Q ss_pred HHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-----------------------------------
Q psy1215 5 TVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL----------------------------------- 49 (260)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~----------------------------------- 49 (260)
+++++. +.++|.+.+.|+++.+|.+.|+.|++.||+++.+|++|
T Consensus 2 ~~~~~~-~~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~vP~e~GG~g~~~~~~~~~~e~la~~~~s~a~~~~~~~~~~ 80 (370)
T cd01159 2 RAEDLA-PLIRERAPEAERARRLPDEVVRALREIGFFRMFVPKRYGGLEGDFAEFAEAIATLAEACGSAAWVASIVATHS 80 (370)
T ss_pred hHHHHH-HHHHHhHHHHHHcCCCCHHHHHHHHHCChHhhCCchhcCCCCCCHHHHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 345555 46889999999999999999999999999999999998
Q ss_pred --------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEEEeCCCCCCCceEEEEEeC
Q psy1215 50 --------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDK 103 (260)
Q Consensus 50 --------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~~~~~~~~~~~~~~~v~~ 103 (260)
.++.++|++++|||+|||+|.|+|+++.+|+++|.++++++++..++++|+||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~t~A~~~~~gy~lnG~K~~it~~~~ad~~~v~a~~~~~~~~~~~~~~lV~~ 160 (370)
T cd01159 81 RMLAAFPPEAQEEVWGDGPDTLLAGSYAPGGRAERVDGGYRVSGTWPFASGCDHADWILVGAIVEDDDGGPLPRAFVVPR 160 (370)
T ss_pred HHHHhCCHHHHHHHhCCCCCceEEeeecCCceeEEeCCeEEEeccccCccCCCcCceeEeeeECCCCCCCCcceEEEEEh
Confidence 235568889999999999999999999999999999986543456789999999
Q ss_pred CCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCC------ccHH---HHHHHHhhHhHHHHHHHHHHHHHHHH
Q psy1215 104 PTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPG------MGFK---IAMMTLDAGRIGIASQALGIAQASLD 174 (260)
Q Consensus 104 ~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~------~g~~---~~~~~~~~~r~~~~a~~~G~~~~~l~ 174 (260)
+ ||++.++|+.+||++++++++.|+||+||++++|+..+ .|+. ........+++.++++++|+++++++
T Consensus 161 ~--Gv~~~~~~~~~G~r~~~s~~v~f~~v~Vp~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~aa~~lG~a~~~l~ 238 (370)
T cd01159 161 A--EYEIVDTWHVVGLRGTGSNTVVVDDVFVPEHRTLTAGDMMAGDGPGGSTPVYRMPLRQVFPLSFAAVSLGAAEGALA 238 (370)
T ss_pred H--HCEEecccccccccccCCCcEEEcceEcCccceecccccccCCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 8 99998899999999999999999999999999997532 2311 22234567889999999999999999
Q ss_pred HHHHHHhhcccc---CcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------CchhHHHHHHHHHHHHHH
Q psy1215 175 CAVEYASKRTAF---GQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQ--------PFTKEAAMAKLAASETAT 243 (260)
Q Consensus 175 ~~~~~~~~r~~~---g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~--------~~~~~~~~~k~~~~~~~~ 243 (260)
.+++|+++|.++ |+++.++|.+|++++++.+.++++|.+++.+++.+|.+. .......++|.++++.+.
T Consensus 239 ~~~~~~~~R~~~~~~g~~i~~~~~v~~~la~~~~~l~~a~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~aK~~~~e~~~ 318 (370)
T cd01159 239 EFLELAGKRVRQYGAAVKMAEAPITQLRLAEAAAELDAARAFLERATRDLWAHALAGGPIDVEERARIRRDAAYAAKLSA 318 (370)
T ss_pred HHHHHhccCcccCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 678999999999999999999999999999999887531 113456789999999999
Q ss_pred HHHHHHHHccCCCCcC
Q psy1215 244 YNAHQAIQIPIITKYL 259 (260)
Q Consensus 244 ~~~~~~~~~~Gg~g~~ 259 (260)
++++.+++++||.||.
T Consensus 319 ~~~~~a~~~~Gg~g~~ 334 (370)
T cd01159 319 EAVDRLFHAAGGSALY 334 (370)
T ss_pred HHHHHHHHhcCchhcc
Confidence 9999999999999996
No 25
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.
Probab=100.00 E-value=5.1e-41 Score=292.95 Aligned_cols=255 Identities=21% Similarity=0.331 Sum_probs=217.4
Q ss_pred CHHHHHHHHHhcccCchhhhh-hhcCCCCH----HHHHHHHHcCCccccCcccc--------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKL-DREHLYPK----EQIKKMGELGLMGVEVPEDL-------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~l~~~G~~~~~vp~~~-------------------------- 49 (260)
+|++.+++|+++.+.|...+. .+.+.+|. ++|++|.+.||+++.+|++|
T Consensus 10 ~l~~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~l~e~G~~gl~vPe~~GG~G~~~~~~~~v~eelg~~~~~~~~ 89 (395)
T TIGR03204 10 AFRDEVRSFFKDNVPADTRQKLVEGRHLTKDEMVTWWRILNKKGWGVSHWPKQYGGTGWTSVQHYIFNEELQSAPAPQPL 89 (395)
T ss_pred HHHHHHHHHHHHhCChhhhhhhhccCCCChHHHHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhcCCCccc
Confidence 478999999999998876543 23345664 89999999999999999998
Q ss_pred -----------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEE
Q psy1215 50 -----------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATV 82 (260)
Q Consensus 50 -----------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~ 82 (260)
..+.|++++++++|+|||+|.|+|++..||+++
T Consensus 90 ~~~~~~~~~~l~~~g~~~q~~~~L~~i~~G~~~~~~a~tEp~~gsd~~~~~t~a~~~g~~~~LnG~K~~vt~a~~Ad~~l 169 (395)
T TIGR03204 90 AFGVSMVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQHADWIF 169 (395)
T ss_pred hhHhHhhHHHHHHhCCHHHHHHHHHHHhCCchheEeEecCCCCCCChhhceEEEEEcCCEEEEeeEEEeecCCccCCeEE
Confidence 124578888999999999999999999999999
Q ss_pred EEEEeCCCC-CCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHH
Q psy1215 83 VFATTDKSK-KHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGI 161 (260)
Q Consensus 83 v~a~~~~~~-~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~ 161 (260)
|.+++++++ +.+++++|+||.++|||++.......| +++++++.|+||+||.+++||..+.|+......+...|++.
T Consensus 170 v~a~~~~~~~~~~g~~~flV~~~~~Gv~~~~~~~~~~--~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~g~ 247 (395)
T TIGR03204 170 CLCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDG--GVEVNEVFFDDVEVPYENLVGEENKGWDYAKFLLGNERTGI 247 (395)
T ss_pred EEEEeCCCCCCCCCeEEEEEeCCCCCeEecChhhccC--CCceeEEEEcceEEcHHHcCCCCCchHHHHHHHHHHHHHHH
Confidence 999976432 345789999999999999954444444 77899999999999999999988899998888889999888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCC-CchhHHHHHHHHHH
Q psy1215 162 ASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKD-NKQ-PFTKEAAMAKLAAS 239 (260)
Q Consensus 162 ~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~-~~~-~~~~~~~~~k~~~~ 239 (260)
++ +|+++++++.+++|+++|.+||+||+++|.||++|+++.+.++++|.++++++.... .+. .....++++|++++
T Consensus 248 aa--~g~a~~~l~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~~~~~~aa~aK~~~~ 325 (395)
T TIGR03204 248 AR--VGVSKERIRRIKDLAAKVESGGKPVIEDAKFREKLAAVEIELKALELTQLRVVADEGKHGKGKPNPASSVLKIKGS 325 (395)
T ss_pred HH--HHHHHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 76 899999999999999999999999999999999999999999999999999975432 221 22457999999999
Q ss_pred HHHHHHHHHHHHc----------cCCCCcC
Q psy1215 240 ETATYNAHQAIQI----------PIITKYL 259 (260)
Q Consensus 240 ~~~~~~~~~~~~~----------~Gg~g~~ 259 (260)
+.+.++++.++|+ +||.||.
T Consensus 326 ~~~~~~~~~a~q~~g~~~~~~~~~Gg~G~~ 355 (395)
T TIGR03204 326 EIQQATTELLMEVIGPFAAPYDVHGDDGSN 355 (395)
T ss_pred HHHHHHHHHHHHhcCccccccccccccccc
Confidence 9999999999986 6677764
No 26
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.
Probab=100.00 E-value=2.5e-41 Score=294.02 Aligned_cols=253 Identities=25% Similarity=0.351 Sum_probs=220.4
Q ss_pred CHHHHHHHHHhcccCchhhhh-----hhcCCCCHHHHHHHHHcCCccccCcccc--------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKL-----DREHLYPKEQIKKMGELGLMGVEVPEDL-------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~G~~~~~vp~~~-------------------------- 49 (260)
++++.+++|+++.+.|..... ++.+.+|.+.++.|++.||+++.+|++|
T Consensus 5 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~vP~~~GG~g~~~~~~~~~~e~l~~~~~~~~~ 84 (380)
T cd01152 5 AFRAEVRAWLAAHLPPELREESALGYREGREDRRRWQRALAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGAPVPF 84 (380)
T ss_pred HHHHHHHHHHHhcCCccccccccccccccchHHHHHHHHHHhCCCCccCCChhhCCCCCCHHHHHHHHHHHHhcCCCccc
Confidence 478999999999998865432 3456689999999999999999999988
Q ss_pred ------------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEE
Q psy1215 50 ------------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEAT 81 (260)
Q Consensus 50 ------------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~ 81 (260)
.++.++++++++||+|||+|.|+|+++.+|++
T Consensus 85 ~~~~~~~~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~tE~~~gsd~~~~~t~a~~~~~g~~L~G~K~~it~~~~ad~~ 164 (380)
T cd01152 85 NQIGIDLAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHYADWA 164 (380)
T ss_pred chhhHHHHHHHHHHhCCHHHHHHHhHHHhCCchhheeecCCCCCCcchhhCeeeEEEcCCeEEEecEEEEEcCccccCEE
Confidence 12457889999999999999999999999999
Q ss_pred EEEEEeCCCC-CCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHH
Q psy1215 82 VVFATTDKSK-KHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIG 160 (260)
Q Consensus 82 ~v~a~~~~~~-~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~ 160 (260)
+|++++++++ +.+++++|+||++.||+++.+.|+.+| +++++++.|+||+||.+++|+.++.|+..+...+...|+.
T Consensus 165 lv~a~~~~~~~~~~~~~~~lVp~~~~Gv~~~~~~~~~g--~~~~~~l~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~ 242 (380)
T cd01152 165 WLLVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSING--GEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTLNFERVS 242 (380)
T ss_pred EEEEEeCCCccCcCCeEEEEEeCCCCceEeeehhhccC--CCCcceEEecCcCcchhcccCCCCchHHHHHHHHHhcccc
Confidence 9999976432 235789999999999999988898888 6789999999999999999999999998877778888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Q psy1215 161 IASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASE 240 (260)
Q Consensus 161 ~~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 240 (260)
.++.+.| +++.+++|+++|.++|+++.++|.+|++++++.+++++++++++.+++.++.+.......+++|+++++
T Consensus 243 ~~~~~~~----~~~~a~~~a~~r~~~g~~l~~~~~vq~~la~~~~~l~~a~~l~~~aa~~~~~~~~~~~~~a~aK~~~~~ 318 (380)
T cd01152 243 IGGSAAT----FFELLLARLLLLTRDGRPLIDDPLVRQRLARLEAEAEALRLLVFRLASALAAGKPPGAEASIAKLFGSE 318 (380)
T ss_pred cchhhhH----HHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 6655444 455667788888899999999999999999999999999999999999998876556678999999999
Q ss_pred HHHHHHHHHHHccCCCCcC
Q psy1215 241 TATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 241 ~~~~~~~~~~~~~Gg~g~~ 259 (260)
.+.++++.+++++||.||.
T Consensus 319 ~a~~v~~~a~~i~Gg~g~~ 337 (380)
T cd01152 319 LAQELAELALELLGTAALL 337 (380)
T ss_pred HHHHHHHHHHHhcCccccc
Confidence 9999999999999999996
No 27
>PLN02876 acyl-CoA dehydrogenase
Probab=100.00 E-value=9e-41 Score=314.28 Aligned_cols=259 Identities=28% Similarity=0.397 Sum_probs=229.1
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcC-------CCC-HHHHHHHH-HcCCccccCccc-----------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREH-------LYP-KEQIKKMG-ELGLMGVEVPED----------------------- 48 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~l~-~~G~~~~~vp~~----------------------- 48 (260)
++++++++|+++.+.|...++++.. .+| .+.|+++. +.||+++.+|++
T Consensus 408 ~l~~~~~~f~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~G~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (822)
T PLN02876 408 ELRKKLIKFMEDHIYPMENEFYKLAQSSSRWTVHPEEERLKELAKKEGLWNLWIPLDSAARARKLLFEDNKHMVSGDSAD 487 (822)
T ss_pred HHHHHHHHHHHHHccCccHHHHhhcccccccccCcchHHHHHHHHHcCcccCCCCchhhhhhhhcccccccccccccccc
Confidence 4789999999999888776655321 377 57888875 999999999995
Q ss_pred -c-----------------------------------------------------------------------------c
Q psy1215 49 -L-----------------------------------------------------------------------------G 50 (260)
Q Consensus 49 -~-----------------------------------------------------------------------------~ 50 (260)
| .
T Consensus 488 ~~GG~G~~~~~~~~~~Eelg~~~~~~~~~~~~~~~~~~~~~l~~~gt~eqk~~~L~~l~~G~~~~~~a~tEp~~~gsd~~ 567 (822)
T PLN02876 488 QLLGAGLSNLEYGYLCEIMGRSVWAPQVFNCGAPDTGNMEVLLRYGNKEQQLEWLIPLLEGKIRSGFAMTEPQVASSDAT 567 (822)
T ss_pred cCCCCCCCHHHHHHHHHHHhccchHHHHhcccCcccccHHHHHHhCCHHHHHHHHHHHhCCCceeEEEecCCCccCcccc
Confidence 3 1
Q ss_pred ccccEEEEeCCeEEEeeeeeeeeCC--CCCcEEEEEEEeCCCC-CCCceEEEEEeCCCCCeeecccCCcccCCCC--Cee
Q psy1215 51 AASTVAKQDSNGWTLNGTKAWITNG--YESEATVVFATTDKSK-KHKGISAFIVDKPTKGLSLGKKEDKLGINAS--STC 125 (260)
Q Consensus 51 ~~~~~a~~~~~g~~l~G~k~~~s~~--~~a~~~~v~a~~~~~~-~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~--~~~ 125 (260)
++.|++++++|||+|||+|.|+||+ ..+|+++|.++++++. +.++.++|+||.+.|||++.++|+++|++++ +++
T Consensus 568 ~~~t~a~~~g~g~vLnG~K~~vtga~~~~ad~~lv~ar~~~~~~~~~~~s~flV~~~~pGv~i~~~~~~~G~r~~~~~~~ 647 (822)
T PLN02876 568 NIECSIRRQGDSYVINGTKWWTSGAMDPRCRVLIVMGKTDFNAPKHKQQSMILVDIQTPGVQIKRPLLVFGFDDAPHGHA 647 (822)
T ss_pred cceEEEEEcCCEEEEEeEEEEecCCCCCCCCEEEEEEecCCCCCCCCcceEEEEeCCCCCceeecccceeccCCCCCCee
Confidence 2467889999999999999999999 4699999999986432 3356899999999999999889999999984 689
Q ss_pred eEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHH
Q psy1215 126 SLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSL 205 (260)
Q Consensus 126 ~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~ 205 (260)
++.|+||+||++++|+.++.|+..+...+..+|+..++.++|+++++++.+++|+++|.+||+++.++|.+|++++++..
T Consensus 648 ~v~fd~V~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~vG~a~~ale~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~ 727 (822)
T PLN02876 648 EISFENVRVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMQLMVQRALSRKAFGKLIAQHGSFLSDLAKCRV 727 (822)
T ss_pred EEEEcceeechhheecCCCchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCchhhCHHHHHHHHHHHH
Confidence 99999999999999998888998888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCC-C-CchhHHHHHHHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 206 KLESARLLTWRAAYLKDNK-Q-PFTKEAAMAKLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 206 ~l~~~~a~~~~~~~~~~~~-~-~~~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
.++++|++++.++..+|.. . .....++++|.++++.+.++++.++|++||.||.
T Consensus 728 ~leaar~l~~~aa~~~d~~~~~~~~~~~a~aK~~a~e~a~~va~~a~qv~Gg~G~~ 783 (822)
T PLN02876 728 ELEQTRLLVLEAADQLDRLGNKKARGIIAMAKVAAPNMALKVLDMAMQVHGAAGVS 783 (822)
T ss_pred HHHHHHHHHHHHHHHHHccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC
Confidence 9999999999999998873 2 3456789999999999999999999999999996
No 28
>cd00567 ACAD Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isob
Probab=100.00 E-value=8.9e-40 Score=278.98 Aligned_cols=258 Identities=42% Similarity=0.620 Sum_probs=221.5
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccC----ccc----c-----------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEV----PED----L----------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~v----p~~----~----------------------- 49 (260)
++++.+++|+.+.+.|.....++....+.+.++.++... ....+ +++ +
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~l~~~g~~~~~~~~l~~~~~g~~~~~~a~sE~~~gs~ 83 (327)
T cd00567 5 ELRDSAREFAAEELEPYARERRETPEEPWELLAELGLLL-GAALLLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSD 83 (327)
T ss_pred HHHHHHHHHHHHhccccHHhHHhhCCCCHHHHHHHHHHh-chHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCc
Confidence 378889999998988877765555445555544444430 11000 010 1
Q ss_pred -cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEEEeCCCC-CCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeE
Q psy1215 50 -GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSK-KHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSL 127 (260)
Q Consensus 50 -~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~~~~~~-~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~ 127 (260)
..+.++++++++||+|||+|.|+|+++.+|+++|.++.++++ +..+..+|+||+++||+++.+.|+.+|+++++++++
T Consensus 84 ~~~~~~~a~~~~~g~~l~G~k~~~s~~~~ad~~lv~a~~~~~~~~~~~~~~~lvp~~~~Gv~~~~~~~~~G~~~~~~~~v 163 (327)
T cd00567 84 LAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIVLARTDEEGPGHRGISAFLVPADTPGVTVGRIWDKMGMRGSGTGEL 163 (327)
T ss_pred hhhCEeEEEEeCCEEEEEEEEEEecCCccCCEEEEEEEeCCCCCCCCceEEEEEeCCCCCeEeccccccccCCCCceEEE
Confidence 235678999999999999999999999999999999986532 345788999999999999999999999999999999
Q ss_pred EEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHH
Q psy1215 128 IFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKL 207 (260)
Q Consensus 128 ~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l 207 (260)
.|+||+||++++++..+.|+......+...++.++++++|+++++++.+++|+++|.+||+++.++|.+|++++++.+.+
T Consensus 164 ~~~~v~Vp~~~~l~~~~~g~~~~~~~~~~~~~~~aa~~~G~a~~al~~~~~~~~~r~~~g~~~~~~~~vq~~la~~~~~~ 243 (327)
T cd00567 164 VFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLLLAAVALGAARAALDEAVEYAKQRKQFGKPLAEFQAVQFKLADMAAEL 243 (327)
T ss_pred EECCEEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccchHHHHHHHHHHHHH
Confidence 99999999999999988888877788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 208 ESARLLTWRAAYLKDNKQP-FTKEAAMAKLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 208 ~~~~a~~~~~~~~~~~~~~-~~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
++++++++.++..++.+.. ......++|.++++.+.++++.+++++||.||.
T Consensus 244 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~k~~~~~~a~~~~~~~~~~~Gg~g~~ 296 (327)
T cd00567 244 EAARLLLYRAAWLLDQGPDEARLEAAMAKLFATEAAREVADLAMQIHGGRGYS 296 (327)
T ss_pred HHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHccCcccc
Confidence 9999999999999988654 567889999999999999999999999999986
No 29
>PTZ00456 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=7.5e-40 Score=296.79 Aligned_cols=256 Identities=27% Similarity=0.383 Sum_probs=226.4
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCC---------C---HHHHHHHHHcCCccccCcccc-------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLY---------P---KEQIKKMGELGLMGVEVPEDL------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~---~~~~~~l~~~G~~~~~vp~~~------------------- 49 (260)
++++++++|+++.+.|...+.|+++.+ | .++|+++.+.||+++.+|++|
T Consensus 62 ~il~~a~~fa~~~~~p~~~~~D~~~~~~~~~g~v~~p~g~~e~~~~l~e~G~~~l~~Pee~GG~Gl~~~~~~~~~E~~~~ 141 (622)
T PTZ00456 62 SLLEEASKLATQTLLPLYESSDSEGCVLLKDGNVTTPKGFKEAYQALKAGGWTGISEPEEYGGQALPLSVGFITRELMAT 141 (622)
T ss_pred HHHHHHHHHHHHhcccchhhHhhccCccccCCcccCChhHHHHHHHHHHcCCCCCCCCcccCCCCcCHHHHHHHHHHHHH
Confidence 378999999999999998888876532 5 589999999999999999998
Q ss_pred -------------------------------------------------------cccccEEEEeCC-eEEEeeeeeeee
Q psy1215 50 -------------------------------------------------------GAASTVAKQDSN-GWTLNGTKAWIT 73 (260)
Q Consensus 50 -------------------------------------------------------~~~~~~a~~~~~-g~~l~G~k~~~s 73 (260)
..+.|+|++++| +|+|||+|.|||
T Consensus 142 a~~~~~~~~~l~~ga~~~L~~~Gs~eqk~~~Lp~l~sGe~~~t~alTEp~aGSD~~~l~T~A~~~gdG~y~L~G~K~fIt 221 (622)
T PTZ00456 142 ANWGFSMYPGLSIGAANTLMAWGSEEQKEQYLTKLVSGEWSGTMCLTEPQCGTDLGQVKTKAEPSADGSYKITGTKIFIS 221 (622)
T ss_pred hchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCChhhhhhccCCccCCCcccCeeEEEECCCCcEEEeeEEEEec
Confidence 346788999877 599999999999
Q ss_pred CCCCC----cEEEEEEEeCCC-CCCCceEEEEEeCCC----------CCeeecccCCcccCCCCCeeeEEEeceeeCCCC
Q psy1215 74 NGYES----EATVVFATTDKS-KKHKGISAFIVDKPT----------KGLSLGKKEDKLGINASSTCSLIFEDCSIPAEN 138 (260)
Q Consensus 74 ~~~~a----~~~~v~a~~~~~-~~~~~~~~~~v~~~~----------~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~ 138 (260)
+++++ ++++|++|++++ ++.+++++|+||++. +||++...++++|+++++++++.|+|+ .++
T Consensus 222 ~g~~~~~~n~~~lVlAr~~~~~~g~~GiSlFlVp~~~~~~~G~~~~~~gv~~~~~~~kmG~~gs~t~~l~fd~~---~~~ 298 (622)
T PTZ00456 222 AGDHDLTENIVHIVLARLPNSLPTTKGLSLFLVPRHVVKPDGSLETAKNVKCIGLEKKMGIKGSSTCQLSFENS---VGY 298 (622)
T ss_pred CCchhhccCcEEEEEEEecCCCCCCCceEEEEEeCCCCCcCCCccCCCCeeecCcccccCCCCCceEEEEeeCh---hHh
Confidence 99874 578999998753 356789999999865 467777788999999999999999994 689
Q ss_pred ccCCCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHhhcccc------------CcccccchhHHHHHHHHHHH
Q psy1215 139 LLGEPGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAF------------GQPIIKLQSIQQKIADMSLK 206 (260)
Q Consensus 139 vl~~~~~g~~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~~~~~r~~~------------g~~l~~~~~v~~~la~~~~~ 206 (260)
+||.+++|+..++..++..|+.++++++|+++++++.+++|+++|.|| +++|.++|.||++|+++.+.
T Consensus 299 llG~~~~Gl~~~~~~mn~aRl~vaa~~lG~a~~Al~~Al~YAk~R~Qfr~~~~~~~~~~~~~~I~~~~~Vr~~L~~~~a~ 378 (622)
T PTZ00456 299 LIGEPNAGMKQMFTFMNTARVGTALEGVCHAELAFQNALRYARERRSMRALSGTKEPEKPADRIICHANVRQNILFAKAV 378 (622)
T ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccccccCCCCccccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999984 68999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCC---C----------chhHHHHHHHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 207 LESARLLTWRAAYLKDNKQ---P----------FTKEAAMAKLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 207 l~~~~a~~~~~~~~~~~~~---~----------~~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
++++|++++.++..+|... + ....++++|.++++.+.++++.++|++||.||+
T Consensus 379 ~eaaral~~~aA~~~D~~~~~~~~~~~~~~~~~~~~~t~iaK~~~te~a~~va~~aiQv~GG~Gy~ 444 (622)
T PTZ00456 379 AEGGRALLLDVGRLLDIHAAAKDAATREALDHEIGFYTPIAKGCLTEWGVEAASRCLQVWGGHGYI 444 (622)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 9999999999999888642 1 124577999999999999999999999999996
No 30
>PLN02636 acyl-coenzyme A oxidase
Probab=100.00 E-value=1.1e-39 Score=298.31 Aligned_cols=258 Identities=23% Similarity=0.310 Sum_probs=223.8
Q ss_pred HHHHHHHHHhcc--c-CchhhhhhhcCCCC-HHHHHHHHHcCCccccCcccc----------------------------
Q psy1215 2 LYKTVRDFTEGE--L-KPIAAKLDREHLYP-KEQIKKMGELGLMGVEVPEDL---------------------------- 49 (260)
Q Consensus 2 l~~~~~~~~~~~--~-~~~~~~~~~~~~~~-~~~~~~l~~~G~~~~~vp~~~---------------------------- 49 (260)
+++.+++|+++. + .|....+++.+.++ .++++.+++.|++++.+|++-
T Consensus 68 ~r~~v~~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~e~l~~~d~s~~~~~~vh~~l 147 (686)
T PLN02636 68 IQEKIYEFFNSRPDLQTPVEISKDEHRELCMRQLTGLVREAGIRPMKYLVEDPAKYFAITEAVGSVDMSLGIKLGVQYSL 147 (686)
T ss_pred HHHHHHHHHHhCccccCCchhhHHHhhhhHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHhhchhhHHHHHhhhhh
Confidence 678899998766 3 56666777777788 899999999999999888652
Q ss_pred -----------------------------------------cccccEEEEe--CCeEEEe-----eeeeeeeCCCC-CcE
Q psy1215 50 -----------------------------------------GAASTVAKQD--SNGWTLN-----GTKAWITNGYE-SEA 80 (260)
Q Consensus 50 -----------------------------------------~~~~~~a~~~--~~g~~l~-----G~k~~~s~~~~-a~~ 80 (260)
.+++|+|+++ +|+|+|| |.|+|++|++. +|+
T Consensus 148 ~~~~I~~~GTeeQk~~~L~~~~~ge~ig~fA~TEpghGSdv~~leTtA~~d~~~defVLntP~~~g~K~wI~na~~~ad~ 227 (686)
T PLN02636 148 WGGSVINLGTKKHRDKYFDGIDNLDYPGCFAMTELHHGSNVQGLQTTATFDPLTDEFVINTPNDGAIKWWIGNAAVHGKF 227 (686)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhCCChhhhhhccCCCcccCcccCeeEEEEcCCCCeEEECCCCCCeEEEeecCCcccCCE
Confidence 4689999998 7899999 99999999975 999
Q ss_pred EEEEEEeCCCC------CCCceEEEEEeCC-------CCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCC-----
Q psy1215 81 TVVFATTDKSK------KHKGISAFIVDKP-------TKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGE----- 142 (260)
Q Consensus 81 ~~v~a~~~~~~------~~~~~~~~~v~~~-------~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~----- 142 (260)
++|+|++..++ +..++++|+||.+ .|||++.++++++|+++.+++.+.||||+||.+++|++
T Consensus 228 ~vV~Arl~~~~~~~~~~~~~Gi~~FlVp~r~~~~~~~~PGV~v~~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~g~v~ 307 (686)
T PLN02636 228 ATVFARLKLPTHDSKGVSDMGVHAFIVPIRDMKTHQVLPGVEIRDCGHKVGLNGVDNGALRFRSVRIPRDNLLNRFGDVS 307 (686)
T ss_pred EEEEEEecCCCCCccCCCCCCeeEEEEecCccccCCCCCCeEeccCCCccCCCCCcceEEEEeeEEECHHHhcccccccc
Confidence 99999986211 2468999999987 59999999999999999999999999999999999953
Q ss_pred -----------CCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCcc------cccchhHHHHHHHHHH
Q psy1215 143 -----------PGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQP------IIKLQSIQQKIADMSL 205 (260)
Q Consensus 143 -----------~~~g~~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~~~~~r~~~g~~------l~~~~~v~~~la~~~~ 205 (260)
.++||......+..+|+.+++.++|+++++++.+++|+.+|.+||+| |.++|.+|++|+++.+
T Consensus 308 ~~G~y~~~~~~~~~gf~~~~~~l~~~R~~iaa~a~g~a~~Al~iAvrYa~~R~qFg~p~~~e~~I~d~q~vQ~~La~~la 387 (686)
T PLN02636 308 RDGKYTSSLPTINKRFAATLGELVGGRVGLAYGSVGVLKASNTIAIRYSLLRQQFGPPKQPEISILDYQSQQHKLMPMLA 387 (686)
T ss_pred CCCcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCEeCCCCCCCCCcccccHHHHHHHHHHHH
Confidence 25688888899999999999999999999999999999999999998 9999999999999999
Q ss_pred HHHHHH----HHHHHHHHHHhCCC-----CchhHHHHHHHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 206 KLESAR----LLTWRAAYLKDNKQ-----PFTKEAAMAKLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 206 ~l~~~~----a~~~~~~~~~~~~~-----~~~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
.+++++ .+++.+++..+.+. +....++++|.++++.+.++++.|+|+|||.||+
T Consensus 388 ~~~a~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~~~~~rq~~GG~Gy~ 450 (686)
T PLN02636 388 STYAFHFATEYLVERYSEMKKTHDDQLVADVHALSAGLKAYITSYTAKALSTCREACGGHGYA 450 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 999965 55555555444432 3456789999999999999999999999999996
No 31
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product. AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.
Probab=100.00 E-value=2.1e-39 Score=284.46 Aligned_cols=249 Identities=27% Similarity=0.426 Sum_probs=219.7
Q ss_pred HHHHHHhcccCchhhhhhhcCC------CC---HHHHHHHHHcCCccccCcccc--------------------------
Q psy1215 5 TVRDFTEGELKPIAAKLDREHL------YP---KEQIKKMGELGLMGVEVPEDL-------------------------- 49 (260)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~l~~~G~~~~~vp~~~-------------------------- 49 (260)
+..++++.. .|...++|+.+. +| .++++.+.+.|++++ +|+++
T Consensus 36 ~~~~~a~~~-~P~~~~~d~~g~r~~~v~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~ 113 (418)
T cd01154 36 ELARLADRN-PPVLEMWDRWGRRVDRVWVHPAWHALMRRLIEEGVINI-EDGPAGEGRRHVHFAAGYLLSDAAAGLLCPL 113 (418)
T ss_pred HHHHHhhcC-CCcccCCCCCCCcCCeEEeCHHHHHHHHHHHHcCCccC-CchhhCCCcHHHHHHHHHHHHhcchhccCcH
Confidence 344555444 677778888777 68 889999999999999 55443
Q ss_pred -------------------------------------------------cccccEEEEe-CCeEEEeeeeeeeeCCCCCc
Q psy1215 50 -------------------------------------------------GAASTVAKQD-SNGWTLNGTKAWITNGYESE 79 (260)
Q Consensus 50 -------------------------------------------------~~~~~~a~~~-~~g~~l~G~k~~~s~~~~a~ 79 (260)
.+++|+|+++ +|+|+|||+|+|+|++ .+|
T Consensus 114 ~~~~~~~~~l~~~g~~~~~~~l~~l~~g~~~~~~~~~~~~TEp~~GSD~~~~~T~A~~~~g~~~~LnG~K~f~s~a-~Ad 192 (418)
T cd01154 114 TMTDAAVYALRKYGPEELKQYLPGLLSDRYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGVYRLNGHKWFASAP-LAD 192 (418)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhCCCcccchhheeeecCCCcccchhhCeEEEEECCCCcEEEEEEEEEecCc-ccC
Confidence 3467889999 8999999999999999 999
Q ss_pred EEEEEEEeCCC-CCCCceEEEEEeCCCC-----CeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHH
Q psy1215 80 ATVVFATTDKS-KKHKGISAFIVDKPTK-----GLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMT 153 (260)
Q Consensus 80 ~~~v~a~~~~~-~~~~~~~~~~v~~~~~-----gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~ 153 (260)
+++|+++++++ ++.+++++|+||++.| ||++.+.|+++|+++++++++.|+|| .+++||.++.|+..+...
T Consensus 193 ~~lv~Art~~~~~~~~gls~flVp~~~~~~~~~Gv~i~~~~~~~G~r~~~~~ev~f~dv---~~~~lG~~g~G~~~~~~~ 269 (418)
T cd01154 193 AALVLARPEGAPAGARGLSLFLVPRLLEDGTRNGYRIRRLKDKLGTRSVATGEVEFDDA---EAYLIGDEGKGIYYILEM 269 (418)
T ss_pred EEEEEEECCCCCCCCCcEEEEEEeccCCCCCCCCeEecccccccCCCCCCeEEEEecCc---CccccCCCCccHHHHHHH
Confidence 99999999754 3457899999999875 99999999999999999999999998 488999999999999999
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---C----
Q psy1215 154 LDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQ---P---- 226 (260)
Q Consensus 154 ~~~~r~~~~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~---~---- 226 (260)
++..|+.+++.++|+++++++.+++|+++|.+||+++.++|.+|++|+++.+++++++++++.++..++... +
T Consensus 270 l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~~fg~~l~~~~~v~~~La~~~~~~eaar~l~~~aa~~~~~~~~~~~~~~~ 349 (418)
T cd01154 270 LNISRLDNAVAALGIMRRALSEAYHYARHRRAFGKPLIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAAADKPVEAH 349 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCChhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999888632 1
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 227 -FTKEAAMAKLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 227 -~~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
....++++|.++++.+.++++.|++++||.||+
T Consensus 350 ~~r~~~~~aK~~~~e~a~~v~~~a~~i~Gg~G~~ 383 (418)
T cd01154 350 MARLATPVAKLIACKRAAPVTSEAMEVFGGNGYL 383 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEEc
Confidence 123567899999999999999999999999985
No 32
>KOG0137|consensus
Probab=100.00 E-value=1.7e-40 Score=284.89 Aligned_cols=256 Identities=34% Similarity=0.528 Sum_probs=231.9
Q ss_pred HHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc---------------------------------
Q psy1215 3 YKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL--------------------------------- 49 (260)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~--------------------------------- 49 (260)
...+++|+.+... ....|+++..+...++.|+++|+|++.||++|
T Consensus 88 ~~pl~r~f~e~~d--~~k~d~~~~~~~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~ 165 (634)
T KOG0137|consen 88 VLPLERFFEEVND--SKKNDKLGKIEETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQS 165 (634)
T ss_pred hhhHHHhhhccch--hhhhhhhcccchhHHHHHHHhCceeeccCcccCccccchHHHHHHhhccccccccceeeeccchh
Confidence 3445555544332 35667888999999999999999999999998
Q ss_pred ------------------------------------------cccccEEEEe--CCeEEEeeeeeeeeCCCCCcEEEEEE
Q psy1215 50 ------------------------------------------GAASTVAKQD--SNGWTLNGTKAWITNGYESEATVVFA 85 (260)
Q Consensus 50 ------------------------------------------~~~~~~a~~~--~~g~~l~G~k~~~s~~~~a~~~~v~a 85 (260)
.+.+++++.. +++|+|||.|.|++|+..||+++|++
T Consensus 166 i~~k~l~lyGt~~Qk~kYL~~LaSg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~VfA 245 (634)
T KOG0137|consen 166 IGLKGLLLYGTDEQKQKYLPKLASGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTVFA 245 (634)
T ss_pred hheeeeeecCCHHHHHHHHHhhhcCCccceEEEecCCCCcccccceeeeeecCCCCeEEEcCeeEEEecCccceeeeeee
Confidence 3467777654 56799999999999999999999999
Q ss_pred EeCCCC----CCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHH
Q psy1215 86 TTDKSK----KHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGI 161 (260)
Q Consensus 86 ~~~~~~----~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~ 161 (260)
+++.++ ..+++++|+|+++..|++...+..+||.+++.+++++|+++.||.+++||.+++|+++.+..++.+|+..
T Consensus 246 qt~~~~~~g~~k~k~T~Flver~~~Gvt~G~~e~k~GiKgsnt~~v~f~~~ki~~envlG~~G~G~kva~nilnsgR~~~ 325 (634)
T KOG0137|consen 246 QTEVDPADGEVKRKITAFLVERDFGGVTNGPPEKKMGIKGSNTAEVHFEGVKIPIENVLGKPGDGFKVAMNILNSGRFGM 325 (634)
T ss_pred ccccCCCCccccCceEEEEEeccccCccCCCchhhhcccccceeeeeeccccccHHHhcCCCCcchHHHHHHHccCCcch
Confidence 998321 2468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHH
Q psy1215 162 ASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNK--QPFTKEAAMAKLAAS 239 (260)
Q Consensus 162 ~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~--~~~~~~~~~~k~~~~ 239 (260)
++..+|.++++++.+.+|+.+|.|||.++.++..+|++++++...++++++++|..+..+|+. .+...+.++.|++++
T Consensus 326 aaa~~G~mkr~I~~~~d~~~~rtQ~g~~L~~~~l~q~k~~~m~~~~Ya~ESm~yl~sg~~D~~~a~d~~lEaai~Ki~a~ 405 (634)
T KOG0137|consen 326 AAALLGLMKRIIEEAADYATNRTQFGKKLHDFGLIQEKVAEMASKVYATESMLYLLSGLMDEVGAKDVQLEAAILKIFAS 405 (634)
T ss_pred hHHHHHHHHHHHHHHHHHhhcceecCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccceeeeehHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999983 467899999999999
Q ss_pred HHHHHHHHHHHHccCCCCcCC
Q psy1215 240 ETATYNAHQAIQIPIITKYLL 260 (260)
Q Consensus 240 ~~~~~~~~~~~~~~Gg~g~~~ 260 (260)
+.++.++++++|++||.||+.
T Consensus 406 e~a~~v~se~iqi~Gg~g~m~ 426 (634)
T KOG0137|consen 406 EQAWAVVSEAIQIVGGMGYMR 426 (634)
T ss_pred hHHHHHHHhhhheeccccccc
Confidence 999999999999999999983
No 33
>KOG0138|consensus
Probab=100.00 E-value=1.4e-40 Score=264.81 Aligned_cols=254 Identities=29% Similarity=0.432 Sum_probs=236.7
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++|+.+|+++++.+.|+..++.++..||.+++.+|++.|++|.++-. |
T Consensus 61 air~~~Reycq~~l~Prvtea~r~e~F~~~i~pemGsmGvlG~tikG-YGCaG~S~vaygl~~rEveRVDs~yrs~~sVq 139 (432)
T KOG0138|consen 61 AIRDTFREYCQERLMPRVTEANRNEVFDREIIPEMGSMGVLGPTIKG-YGCAGVSSVAYGLLAREVERVDSGYRSAMSVQ 139 (432)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhhccCChhhhhhhhccccccCcccC-cCCCchHHHHHHHHHHHHHHhhhhchhhhhhh
Confidence 37899999999999999999999999999999999999999987764 2
Q ss_pred --------------------------------------------cccccEEEEeCCe--EEEeeeeeeeeCCCCCcEEEE
Q psy1215 50 --------------------------------------------GAASTVAKQDSNG--WTLNGTKAWITNGYESEATVV 83 (260)
Q Consensus 50 --------------------------------------------~~~~~~a~~~~~g--~~l~G~k~~~s~~~~a~~~~v 83 (260)
..+.|+|++++++ |.|||.|.||+|++.||+++|
T Consensus 140 sSL~m~~Iy~~GSE~QkqkYlPslA~g~~igcfgLTEPn~GSdpsgmeT~At~~e~~ktyklNGsKtWI~nsp~aDl~vv 219 (432)
T KOG0138|consen 140 SSLVMGPIYAYGSEEQKQKYLPSLAKGKLIGCFGLTEPNHGSDPSGMETRATYDESNKTYKLNGSKTWITNSPMADLFVV 219 (432)
T ss_pred hhhhhhhHhhcCCHHHHhhhhhhhhcCceeeEEeccCCCCCCCcccccceeEEccCCceEEECCeeeeecCCcccceEEE
Confidence 5678999999876 999999999999999999999
Q ss_pred EEEeCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHH
Q psy1215 84 FATTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIAS 163 (260)
Q Consensus 84 ~a~~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a 163 (260)
++|...+ +.+-=|+|+++.+|++-....+++++|.+.++.|..|||+||+|++|.... ++.-.+.+++..|.++++
T Consensus 220 wAr~~t~---n~I~GFi~~k~~~GL~apkI~gK~sLRas~tG~Ilmd~V~VPeE~~LPg~~-s~qgpf~cLnnaR~giAW 295 (432)
T KOG0138|consen 220 WARCETD---NKIRGFILEKGMRGLSAPKIEGKFSLRASATGMILMDGVEVPEENLLPGAS-SLQGPFGCLNNARYGIAW 295 (432)
T ss_pred EEecccC---CceeeEEEecCCCCCcCCCcCCeeeeeecccCceeecCCcCChhhcCCCcc-ccCCchhhhhhhhhheee
Confidence 9999753 456779999999999998889999999999999999999999999996553 566677899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH
Q psy1215 164 QALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETAT 243 (260)
Q Consensus 164 ~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 243 (260)
..+|+++.+++.+.+|..+|+|||+|++.+|.+|.++++|..++...-.++.+..+.-|.+......++..|.+.+..++
T Consensus 296 g~lGase~c~~~arqY~ldRkQFG~PLAanQL~Q~Kladmltei~lgl~~clrl~rLkd~g~~tp~qiSl~Krn~~gKal 375 (432)
T KOG0138|consen 296 GALGASEFCLHTARQYTLDRKQFGRPLAANQLIQKKLADMLTEITLGLQACLRLGRLKDQGKATPEQISLLKRNNCGKAL 375 (432)
T ss_pred hhchhHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCChhhhHHHhhccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred HHHHHHHHccCCCCcC
Q psy1215 244 YNAHQAIQIPIITKYL 259 (260)
Q Consensus 244 ~~~~~~~~~~Gg~g~~ 259 (260)
++++.+.+++||.|+.
T Consensus 376 eiAr~~RdmLGgNGI~ 391 (432)
T KOG0138|consen 376 EIARQARDMLGGNGIS 391 (432)
T ss_pred HHHHHHHHHhcCCcch
Confidence 9999999999999974
No 34
>PLN02312 acyl-CoA oxidase
Probab=100.00 E-value=3.5e-37 Score=281.31 Aligned_cols=239 Identities=20% Similarity=0.294 Sum_probs=211.0
Q ss_pred hhhcCCCCHHHHHHHHHcCCccccCcccc---------------------------------------------------
Q psy1215 21 LDREHLYPKEQIKKMGELGLMGVEVPEDL--------------------------------------------------- 49 (260)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~G~~~~~vp~~~--------------------------------------------------- 49 (260)
.++...++.+.++++.+.|+++..+|++.
T Consensus 100 ~~~~~~~~~~~~~~l~~~g~~~~~~pe~g~~~~~~~~~~~Eel~~~d~s~~~~~~vh~~l~~~~I~~~GTeeqk~~~L~~ 179 (680)
T PLN02312 100 MEQQREITMKRILYLLERGVFRGWLTETGPEAELRKLALLEVIGIYDHSLAIKLGVHFFLWGGAIKFLGTKRHHDKWLKD 179 (680)
T ss_pred HHHHHHhHHHHHHHHHHhhhcCCCCCCCCCccHHHHHHHHHHHHHhcchHHHHHHhhhhhHHHHHHHhCCHHHHHHHHHH
Confidence 35556778899999999999998887542
Q ss_pred ---------------------cccccEEEEe--CCeEEEe-----eeeeeeeCC-CCCcEEEEEEEeCCCCCCCceEEEE
Q psy1215 50 ---------------------GAASTVAKQD--SNGWTLN-----GTKAWITNG-YESEATVVFATTDKSKKHKGISAFI 100 (260)
Q Consensus 50 ---------------------~~~~~~a~~~--~~g~~l~-----G~k~~~s~~-~~a~~~~v~a~~~~~~~~~~~~~~~ 100 (260)
.+++|+|+++ +++|+|| |+|+|++|+ ..|++++|+|++..+++..++.+|+
T Consensus 180 ~~~ge~ig~fA~TEpghGSdv~~leTtAt~D~~~defVLNtPt~~g~K~wig~a~~~A~~~vV~Arl~~~~~~~Gv~~Fl 259 (680)
T PLN02312 180 TEDYVVKGCFAMTELGHGSNVRGIETVTTYDPKTEEFVINTPCESAQKYWIGGAANHATHTIVFSQLHINGKNEGVHAFI 259 (680)
T ss_pred HhCCCeeeEeeecCCCcCcchhcCeEEEEEeCCCCEEEECCCCCCeEEECccCCcccCCEEEEEEEECCCCCCCCeEEEE
Confidence 4678999998 4789999 799999999 7999999999997544556899999
Q ss_pred Ee---CC---CCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCC----------------CCccHHHHHHHHhhHh
Q psy1215 101 VD---KP---TKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGE----------------PGMGFKIAMMTLDAGR 158 (260)
Q Consensus 101 v~---~~---~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~----------------~~~g~~~~~~~~~~~r 158 (260)
|| .+ .|||++.++++++|+++.+++.+.||||+||.+++|++ ++.||..+...+..+|
T Consensus 260 V~ird~~~~~~PGV~ig~~~~K~G~~g~dng~l~FdnVrVP~~nlLg~~~~V~~~G~y~~~~~~~~~gf~~~~~~l~~~R 339 (680)
T PLN02312 260 AQIRDQDGNICPNIRIADCGHKIGLNGVDNGRIWFDNLRIPRENLLNSVADVSPDGKYVSAIKDPDQRFGAFLAPLTSGR 339 (680)
T ss_pred EeecCCCCCCCCCEEeccCCCcccccCCCceEEEEccEEECHHHhCCccceeCCCCceecCCCCccchHHHHHHHHHHHH
Confidence 98 33 79999999999999999999999999999999999984 5678888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCc----c---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CC
Q psy1215 159 IGIASQALGIAQASLDCAVEYASKRTAFGQ----P---IIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNK-----QP 226 (260)
Q Consensus 159 ~~~~a~~~G~~~~~l~~~~~~~~~r~~~g~----~---l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~-----~~ 226 (260)
+.+++.++|+++++++.+++|+..|.|||+ + |.++|.+|++|+++.+.+++++.....+.+..+.+ .+
T Consensus 340 ~~iaa~a~g~a~~Al~iAvrYa~~R~QFg~~~~~~E~~I~dyq~~Q~rLa~~la~~~a~~~~a~~l~~~~~~~~~~~~~~ 419 (680)
T PLN02312 340 VTIAVSAIYSSKVGLAIAIRYSLSRRAFSVTPNGPEVLLLDYPSHQRRLLPLLAKTYAMSFAANDLKMIYVKRTPESNKA 419 (680)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCeecCCCCCCccchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 999999999999999999999999999984 4 99999999999999999999988887777765543 23
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 227 FTKEAAMAKLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 227 ~~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
....++++|.++++.+.++++.|+|+|||.||+
T Consensus 420 ~~~~as~aKa~~t~~a~~~~~~~rq~~GG~Gy~ 452 (680)
T PLN02312 420 IHVVSSGFKAVLTWHNMRTLQECREACGGQGLK 452 (680)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 557889999999999999999999999999996
No 35
>PRK11561 isovaleryl CoA dehydrogenase; Provisional
Probab=100.00 E-value=3e-36 Score=268.04 Aligned_cols=200 Identities=25% Similarity=0.349 Sum_probs=184.1
Q ss_pred ccccEEEEe-CCeEEEeeeeeeeeCCCCCcEEEEEEEeCCCCCCCceEEEEEeCCCC-----CeeecccCCcccCCCCCe
Q psy1215 51 AASTVAKQD-SNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTK-----GLSLGKKEDKLGINASST 124 (260)
Q Consensus 51 ~~~~~a~~~-~~g~~l~G~k~~~s~~~~a~~~~v~a~~~~~~~~~~~~~~~v~~~~~-----gv~~~~~~~~~G~~~~~~ 124 (260)
+++|+|+++ +|+|+|||+|+|+| ++.+|+++|+++++ +++++|+||++.| ||++...++++|++++++
T Consensus 195 ~~~T~A~~~~gg~w~LnG~K~fiS-a~~AD~~lVlArt~-----~Gls~FlVp~~~p~g~~nGv~i~rl~~klG~r~~~t 268 (538)
T PRK11561 195 SNTTRAERLADGSYRLVGHKWFFS-VPQSDAHLVLAQAK-----GGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNAS 268 (538)
T ss_pred hCeeEEEECCCCeEEEEEEEEEEE-chhhCEEEEEEEEC-----CceEEEEEECCCCCCCCCceEEecccccccCCCCce
Confidence 456788884 67899999999999 68999999999985 3799999999988 799988899999999999
Q ss_pred eeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHH
Q psy1215 125 CSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMS 204 (260)
Q Consensus 125 ~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~ 204 (260)
++|.|+|| .+++||.+++|+..+...++..|+..++.++|+++++++.+++|+++|.+||++|.++|.+|++|+++.
T Consensus 269 ~ev~f~dv---~~~llG~~g~G~~~i~~~l~~~Rl~~a~~a~G~a~~Al~~A~~yA~~R~~FG~~L~~~q~vq~~LAdm~ 345 (538)
T PRK11561 269 SEVEFQDA---IGWLLGEEGEGIRLILKMGGMTRFDCALGSHGLMRRAFSVAIYHAHQRQVFGKPLIEQPLMRQVLSRMA 345 (538)
T ss_pred eEEEECCH---HHHHCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCccccCHHHHHHHHHHH
Confidence 99999999 488999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCc------hhHHHHHHHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 205 LKLESARLLTWRAAYLKDNKQPF------TKEAAMAKLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 205 ~~l~~~~a~~~~~~~~~~~~~~~------~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
.++++++++++.++..+|.+.+. ...++++|.++++.+.+++++|+|++||.||+
T Consensus 346 ~~ieaar~l~~~aa~~~d~~~~~~~~~~~rl~t~~aK~~~~e~a~~v~~~Amqv~GG~Gy~ 406 (538)
T PRK11561 346 LQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGIPFVAEAMEVLGGIGYC 406 (538)
T ss_pred HHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCC
Confidence 99999999999999999876421 23456899999999999999999999999996
No 36
>KOG1469|consensus
Probab=100.00 E-value=2.8e-37 Score=242.58 Aligned_cols=210 Identities=29% Similarity=0.421 Sum_probs=194.7
Q ss_pred cccccEEEEeCCeEEEeeeeeeeeCCCC--CcEEEEEEEeCCC--CCCCceEEEEEeCCCCCeeecccCCcccCCCCC--
Q psy1215 50 GAASTVAKQDSNGWTLNGTKAWITNGYE--SEATVVFATTDKS--KKHKGISAFIVDKPTKGLSLGKKEDKLGINASS-- 123 (260)
Q Consensus 50 ~~~~~~a~~~~~g~~l~G~k~~~s~~~~--a~~~~v~a~~~~~--~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~-- 123 (260)
.+++++.+++++.|+|||+|+|+||+.+ +.+.++..+++.. ...+..++.+||+++|||+++.+.+.+|....+
T Consensus 130 TNIe~SI~r~~~~YvINg~KWw~sga~~PkCrv~i~mGkt~~~~~~rhkQqSmiLVpM~TpGvkiiRpltVfG~~DapgG 209 (392)
T KOG1469|consen 130 TNIECSIRRDGDSYVINGKKWWISGAGDPKCRIAIFMGKTDNTSASRHKQQSMILVPMNTPGVKIIRPLTVFGYTDAPGG 209 (392)
T ss_pred ccceEEEEEcCCEEEEecceeeecCCCCCceEEEEEecccCCCccchhhcccEEEEecCCCCeeEeeeeeeeccccCCCC
Confidence 6788899999999999999999999975 6788899988864 345678999999999999999999999998774
Q ss_pred eeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHH
Q psy1215 124 TCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADM 203 (260)
Q Consensus 124 ~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~ 203 (260)
+.+++|+||+||..|++..+|.||.+....+.++|+++|+..+|.++++++.+.+.+..|..||+++.++..+.+.+|+.
T Consensus 210 H~Ei~F~~VrVP~~NmlLGeGrGFEIaQGRLGPGRiHHcMRliG~aERal~lm~~R~~sRiaFgk~l~q~~s~~~diA~s 289 (392)
T KOG1469|consen 210 HFEIHFENVRVPATNMLLGEGRGFEIAQGRLGPGRIHHCMRLIGLAERALQLMKERALSRIAFGKKLVQHGSVAHDIAES 289 (392)
T ss_pred cceEEEEEEEeeccceeecCCCcceeeccccCCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhhcchHHHHHHHH
Confidence 68999999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 204 SLKLESARLLTWRAAYLKDNK--QPFTKEAAMAKLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 204 ~~~l~~~~a~~~~~~~~~~~~--~~~~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
+.+++.+|.++.+++..+|.- .....+.+|.|+.+..++..+.++++|.+||.|..
T Consensus 290 RveiEqaRLLvLkAAh~mD~~G~k~Ak~~iAMiKv~AP~ma~kilD~AiQ~~G~aG~s 347 (392)
T KOG1469|consen 290 RVEIEQARLLVLKAAHSMDTLGNKGAKKEIAMIKVAAPNMASKILDRAIQVQGGAGVS 347 (392)
T ss_pred HhHhhhhhhhhhhhhhhhhhhcchhhhhheeeeeecCcHHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999974 35567889999999999999999999999999863
No 37
>PTZ00460 acyl-CoA dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-34 Score=261.41 Aligned_cols=210 Identities=22% Similarity=0.282 Sum_probs=186.7
Q ss_pred cccccEEEEe--CCeEEEe-----eeeeeeeC-CCCCcEEEEEEEeCCCCCCCceEEEEEeC-------CCCCeeecccC
Q psy1215 50 GAASTVAKQD--SNGWTLN-----GTKAWITN-GYESEATVVFATTDKSKKHKGISAFIVDK-------PTKGLSLGKKE 114 (260)
Q Consensus 50 ~~~~~~a~~~--~~g~~l~-----G~k~~~s~-~~~a~~~~v~a~~~~~~~~~~~~~~~v~~-------~~~gv~~~~~~ 114 (260)
.+++|+|+++ +|+|+|| |+|+|++| +..||+++|+|++..+++..++.+|+||. +.|||++.+.+
T Consensus 143 ~~leTtAt~d~~~defvLntPt~~g~K~wi~~~g~~A~~~vV~Arl~~~~~~~Gi~~FlV~ird~~~~~~~pGV~vg~~~ 222 (646)
T PTZ00460 143 QNLETTATYDKQTNEFVIHTPSVEAVKFWPGELGFLCNFALVYAKLIVNGKNKGVHPFMVRIRDKETHKPLQGVEVGDIG 222 (646)
T ss_pred ccceEEEEEcCCCCEEEECCCCCCeEEEccCCCCCCCCEEEEEEEECcCCCCCceEEEEEeccccCCCCCCCCeEEeccc
Confidence 5688999986 5789998 99999998 68899999999997544456899999993 24999999999
Q ss_pred CcccCCCCCeeeEEEeceeeCCCCccCC------CCc----c-HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy1215 115 DKLGINASSTCSLIFEDCSIPAENLLGE------PGM----G-FKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKR 183 (260)
Q Consensus 115 ~~~G~~~~~~~~~~f~~v~Vp~~~vl~~------~~~----g-~~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~~~~~r 183 (260)
+++|+++.+++.+.||||+||.+++|+. .|. | +...+..+...|+.+++.++|+++++++.+++|+.+|
T Consensus 223 ~k~G~~~~dng~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~g~~~~~~~~l~~~R~~iaa~~~g~a~~Al~iAvrYa~~R 302 (646)
T PTZ00460 223 PKMGYAVKDNGFLSFDHYRIPLDSLLARYIKVSEDGQVERQGNPKVSYASMMYMRNLIIDQYPRFAAQALTVAIRYSIYR 302 (646)
T ss_pred cccCcCCCCceEEEeceEEECHHHhCCcccccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999985 342 4 6777788889999999999999999999999999999
Q ss_pred cccCc------ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CC------chhHHHHHHHHHHHHHHHH
Q psy1215 184 TAFGQ------PIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNK------QP------FTKEAAMAKLAASETATYN 245 (260)
Q Consensus 184 ~~~g~------~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~------~~------~~~~~~~~k~~~~~~~~~~ 245 (260)
.+||+ +|+++|.+|++|+++.+.+++++.+++++++..+.. .+ ....++++|.++++.+.++
T Consensus 303 ~QFg~~~~~E~pI~~yQ~~Q~rLa~~la~~~A~r~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~as~aK~~~t~~a~~~ 382 (646)
T PTZ00460 303 QQFTNDNKQENSVLEYQTQQQKLLPLLAEFYACIFGGLKIKELVDDNFNRVQKNDFSLLQLTHAILSAAKANYTYFVSNC 382 (646)
T ss_pred ccCCCCCCCCCcHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 99997 999999999999999999999999999998877642 11 2456889999999999999
Q ss_pred HHHHHHccCCCCcC
Q psy1215 246 AHQAIQIPIITKYL 259 (260)
Q Consensus 246 ~~~~~~~~Gg~g~~ 259 (260)
++.|+|+|||.||.
T Consensus 383 ~~~~~q~~GG~Gy~ 396 (646)
T PTZ00460 383 AEWCRLSCGGHGYA 396 (646)
T ss_pred HHHHHHHhCCcccc
Confidence 99999999999996
No 38
>cd01150 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.
Probab=100.00 E-value=3.5e-33 Score=254.08 Aligned_cols=210 Identities=25% Similarity=0.280 Sum_probs=183.3
Q ss_pred cccccEEEEeC--CeEEEe-----eeeeeeeCCC-CCcEEEEEEEeCCCCCCCceEEEEEeCC-------CCCeeecccC
Q psy1215 50 GAASTVAKQDS--NGWTLN-----GTKAWITNGY-ESEATVVFATTDKSKKHKGISAFIVDKP-------TKGLSLGKKE 114 (260)
Q Consensus 50 ~~~~~~a~~~~--~g~~l~-----G~k~~~s~~~-~a~~~~v~a~~~~~~~~~~~~~~~v~~~-------~~gv~~~~~~ 114 (260)
.+++|+|++++ ++|+|| |+|+|++|++ .+++++|+|+...+++..++.+|+||.+ .|||++.+.+
T Consensus 150 ~~leTtAt~d~~t~efvLntp~~~g~K~wi~~~~~~a~~~vV~Arl~~~g~~~Gv~~FlVp~rd~~~~~~~pGV~i~~~~ 229 (610)
T cd01150 150 QGLETTATYDPLTQEFVINTPDFTATKWWPGNLGKTATHAVVFAQLITPGKNHGLHAFIVPIRDPKTHQPLPGVTVGDIG 229 (610)
T ss_pred ccceeEEEECCCCCeEEECCCCCCceEECccCcccCCCEEEEEEEeccCCCCCCeEEEEEeccccccCCCCCCeEEeecc
Confidence 45789999998 899999 9999999986 4999999999864444568999999953 3999999999
Q ss_pred CcccCCCCCeeeEEEeceeeCCCCccCC----------------CCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q psy1215 115 DKLGINASSTCSLIFEDCSIPAENLLGE----------------PGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVE 178 (260)
Q Consensus 115 ~~~G~~~~~~~~~~f~~v~Vp~~~vl~~----------------~~~g~~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~ 178 (260)
+++|+++.+++.+.||||+||.+++|++ ++.|+..+...+..+|+.+++.++|.++++++.+++
T Consensus 230 ~k~G~~g~dng~l~Fd~vrVP~~nlL~~~~~v~~~G~~~~~~~~~~~g~~~~~~~~~~gRl~ia~~a~g~~~~al~iAi~ 309 (610)
T cd01150 230 PKMGLNGVDNGFLQFRNVRIPRENLLNRFGDVSPDGTYVSPFKDPNKRYGAMLGTRSGGRVGLIYDAAMSLKKAATIAIR 309 (610)
T ss_pred cccCCCCCCeEEEEEeeeEecHHHhcccccccCCCCceecCCCchhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999986 567888888889999999999999999999999999
Q ss_pred HHhhccccCcc-------cccchhHHHHHHHHHHHHHHHHHHHHHHHH-------HHhCCC-----CchhHHHHHHHHHH
Q psy1215 179 YASKRTAFGQP-------IIKLQSIQQKIADMSLKLESARLLTWRAAY-------LKDNKQ-----PFTKEAAMAKLAAS 239 (260)
Q Consensus 179 ~~~~r~~~g~~-------l~~~~~v~~~la~~~~~l~~~~a~~~~~~~-------~~~~~~-----~~~~~~~~~k~~~~ 239 (260)
|+..|.+||.+ |.++|.+|++|+++.+..++.+...+.... .++.+. +....++++|.+++
T Consensus 310 Ya~~R~qfg~~~~~~e~~I~~~q~~q~rL~~~la~~~a~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~aa~~K~~~t 389 (610)
T cd01150 310 YSAVRRQFGPKPSDPEVQILDYQLQQYRLFPQLAAAYAFHFAAKSLVEMYHEIIKELLQGNSELLAELHALSAGLKAVAT 389 (610)
T ss_pred HHHeeeecCCCCCCCcchhhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhhHHHHHHHHHHHHHHH
Confidence 99999999988 999999999999999999987755444322 333331 23467889999999
Q ss_pred HHHHHHHHHHHHccCCCCcC
Q psy1215 240 ETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 240 ~~~~~~~~~~~~~~Gg~g~~ 259 (260)
+.+.++++.|+|+|||.||+
T Consensus 390 ~~a~~~~~~~rq~~GG~Gy~ 409 (610)
T cd01150 390 WTAAQGIQECREACGGHGYL 409 (610)
T ss_pred HHHHHHHHHHHHHhcCccch
Confidence 99999999999999999996
No 39
>PLN02443 acyl-coenzyme A oxidase
Probab=100.00 E-value=2.6e-31 Score=242.28 Aligned_cols=210 Identities=20% Similarity=0.220 Sum_probs=178.5
Q ss_pred cccccEEEEe--CCeEEEe-----eeeeeeeCC-CCCcEEEEEEEeCCCCCCCceEEEEEeCC-------CCCeeecccC
Q psy1215 50 GAASTVAKQD--SNGWTLN-----GTKAWITNG-YESEATVVFATTDKSKKHKGISAFIVDKP-------TKGLSLGKKE 114 (260)
Q Consensus 50 ~~~~~~a~~~--~~g~~l~-----G~k~~~s~~-~~a~~~~v~a~~~~~~~~~~~~~~~v~~~-------~~gv~~~~~~ 114 (260)
.+++|+|+++ +++|+|| |+|+|++|+ ..+++++|+|++..+++..++.+|+||.+ .|||++.+++
T Consensus 147 ~~leTtAt~d~~~~efvIntP~~~g~K~wig~~~~~A~~~vV~Arl~~~~~~~Gv~~FlVp~r~~~~~~~~PGV~vgd~g 226 (664)
T PLN02443 147 QGLETTATFDPKTDEFVIHSPTLTSSKWWPGGLGKVSTHAVVYARLITNGKDHGIHGFIVQLRSLDDHSPLPGVTVGDIG 226 (664)
T ss_pred hhCeEEEEEeCCCCEEEECCCCCCEEEEeecCCcccCCEEEEEEEECCCCCCCCeEEEEEecCCcCcCCCCCCeEEeccc
Confidence 4578999998 6789998 999999997 68999999999865444568999999965 7999999999
Q ss_pred Cccc---CCCCCeeeEEEeceeeCCCCccCCC------CccH------HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy1215 115 DKLG---INASSTCSLIFEDCSIPAENLLGEP------GMGF------KIAMMTLDAGRIGIASQALGIAQASLDCAVEY 179 (260)
Q Consensus 115 ~~~G---~~~~~~~~~~f~~v~Vp~~~vl~~~------~~g~------~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~~ 179 (260)
+++| +++.+++.+.|+||+||.+++|+.. +... ......+...|+.+++.++|.++++++.+++|
T Consensus 227 ~K~G~~~~~~~dng~l~Fd~VrVP~~nlLg~~~~v~~~G~~~~~~~~~~~~~~~l~~~R~~i~a~a~g~~~~Al~iAvrY 306 (664)
T PLN02443 227 MKFGNGAYNTMDNGFLRFDHVRIPRDQMLMRLSKVTREGKYVQSDVPRQLVYGTMVYVRQTIVADASTALSRAVCIATRY 306 (664)
T ss_pred cccCcccCCCCcceEEEeCcEEECHHHcCCcccccCCCCceecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 5568899999999999999999753 2222 23445678889999999999999999999999
Q ss_pred HhhccccCcccc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CC-C----chhHHHHHHHHHHH
Q psy1215 180 ASKRTAFGQPII-------KLQSIQQKIADMSLKLESARLLTWRAAYLKDN-------KQ-P----FTKEAAMAKLAASE 240 (260)
Q Consensus 180 ~~~r~~~g~~l~-------~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~-------~~-~----~~~~~~~~k~~~~~ 240 (260)
+..|.+||++++ +++.+|++|+.+.+.+++++.+.++++...+. +. . ....++++|.++++
T Consensus 307 a~~R~QFg~~~~~~e~qii~y~~~Q~rL~~~la~~~a~r~~~~~a~~~~~~~~~~~~~~~~~~~~e~h~~aa~~Ka~~t~ 386 (664)
T PLN02443 307 SAVRRQFGSQDGGPETQVIDYKTQQSRLFPLLASAYAFRFVGEWLKWLYTDVTQRLEANDFSTLPEAHACTAGLKSLTTS 386 (664)
T ss_pred HHccEeCCCCCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHHHHHHHHHHHHH
Confidence 999999998877 45555999999999999999999998876653 11 1 22347899999999
Q ss_pred HHHHHHHHHHHccCCCCcC
Q psy1215 241 TATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 241 ~~~~~~~~~~~~~Gg~g~~ 259 (260)
.+.+++++|+|+|||.||+
T Consensus 387 ~a~~~i~~~rq~cGG~Gy~ 405 (664)
T PLN02443 387 ATADGIEECRKLCGGHGYL 405 (664)
T ss_pred HHHHHHHHHHHHccCcccc
Confidence 9999999999999999996
No 40
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.97 E-value=4.4e-30 Score=226.34 Aligned_cols=197 Identities=19% Similarity=0.190 Sum_probs=171.2
Q ss_pred EEEeCCeEEEeeeeeeeeCCCCCcEEEEEEEeCCCCCC-C--ceEEEEEeCCCCCeeecccCCcccCCCC----------
Q psy1215 56 AKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKH-K--GISAFIVDKPTKGLSLGKKEDKLGINAS---------- 122 (260)
Q Consensus 56 a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~~~~~~~~-~--~~~~~~v~~~~~gv~~~~~~~~~G~~~~---------- 122 (260)
..++++||+|||.|.|+|++ .+|+++|+++++...+. + ..++|+||.++||+++....+.+|.++.
T Consensus 171 ve~~~dGiVV~GaK~~~T~~-~ad~~~V~~~~~~~~~~~~~~ya~~F~VP~dtpGl~~i~r~~~~~~~~~~D~plssrfd 249 (477)
T TIGR02309 171 VEQTDKGVIVRGARMTATFP-IADEILIFPSTVLKAGAEKDPYALAFAIPTNTPGLHFVCREALDGGDSPFDHPLSSRFE 249 (477)
T ss_pred EEEcCCCEEEeCHHHhhhhc-ccceEEEeccCCCCCccCCCCeEEEEEeeCCCCceEEEeCCccCCCCCcccCccccccC
Confidence 35568899999999999996 99999999988643222 2 3789999999999999888888888876
Q ss_pred -CeeeEEEeceeeCCCCc--cCCC---CccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccchhH
Q psy1215 123 -STCSLIFEDCSIPAENL--LGEP---GMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSI 196 (260)
Q Consensus 123 -~~~~~~f~~v~Vp~~~v--l~~~---~~g~~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v 196 (260)
..+.++||||+||+|+| +|.. +.||... ..+...+.+++|+..+++|.++.++.. ..++.++.++|.|
T Consensus 250 e~da~vvFDdV~VPwe~VF~~g~~e~a~~~f~~~-----~~~~~~~~~~~g~~~~~ld~~~g~a~~-~a~~~gi~~~q~V 323 (477)
T TIGR02309 250 EMDALVIFDDVLVPWERIFILGDVELCNNAYAAT-----GAVNHMAHQVVALKIAKTEAFLGVAAL-MAEGIGADGFQHV 323 (477)
T ss_pred CCeEEEEeCceeccHHHhhhcCCHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhCcccchHH
Confidence 67999999999999999 7776 5555442 223667899999999999999999999 8999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHHHHHHHHHHHHHccCCCCcCC
Q psy1215 197 QQKIADMSLKLESARLLTWRAAYLKDNKQ-----PFTKEAAMAKLAASETATYNAHQAIQIPIITKYLL 260 (260)
Q Consensus 197 ~~~la~~~~~l~~~~a~~~~~~~~~~~~~-----~~~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~~ 260 (260)
|++|+++.+.+++++++++.++...+.+. +....++++|+++++...++. .++|++||.|+++
T Consensus 324 Q~kLAEm~~~~Ea~ral~~aAa~~~~~~~~G~~~P~~~~as~aKl~~~e~~~rv~-~alq~lGG~G~~~ 391 (477)
T TIGR02309 324 QEKIAEIIVYLEAMKAFWTRAEEEAKENAYGLMTPDRGALDAARNLYPRLYPRLR-EILEQLGASGLIT 391 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCCCCcccCCHHHHHHHHHHHHHHHHHHH-HHHHHHhCCcEEe
Confidence 99999999999999999999999888743 457889999999999999995 9999999999863
No 41
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=99.97 E-value=2.5e-29 Score=222.50 Aligned_cols=175 Identities=21% Similarity=0.203 Sum_probs=155.3
Q ss_pred ccccEEEEe-CCeEEEeeeeeeeeCCCCCcEEEEEEEeCCC----CC---CCceEEEEEeCCCCCeeecccCCcccCCCC
Q psy1215 51 AASTVAKQD-SNGWTLNGTKAWITNGYESEATVVFATTDKS----KK---HKGISAFIVDKPTKGLSLGKKEDKLGINAS 122 (260)
Q Consensus 51 ~~~~~a~~~-~~g~~l~G~k~~~s~~~~a~~~~v~a~~~~~----~~---~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~ 122 (260)
.+.|+++++ +|+|+|||+|.|+ ++..||+++|++++++. .+ .+++++|+||+++|||++..
T Consensus 150 ~i~TtA~~~~gg~wvLNG~K~~t-~g~~Ad~~lV~Art~~~~~~~~g~~~~~git~FlV~~dapGVtv~~---------- 218 (520)
T PTZ00457 150 MNTTKASLTDDGSYVLTGQKRCE-FAASATHFLVLAKTLTQTAAEEGATEVSRNSFFICAKDAKGVSVNG---------- 218 (520)
T ss_pred cceeEEEEcCCCeEEEEEEEEEE-cCchhcEEEEEeecCCcccccccccCcCceEEEEEECCCCceEEec----------
Confidence 356778875 5589999999965 89999999999998531 11 24789999999999999942
Q ss_pred CeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHH
Q psy1215 123 STCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIAD 202 (260)
Q Consensus 123 ~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~ 202 (260)
+++.|||| |.+++||.++.||+.....++.+|+.+++.++|+++++++.+.+|+. +|.||+++|+
T Consensus 219 --~eV~FddV--P~~~vLG~~g~G~~~a~~~L~~~Rl~~aA~~vGia~~ale~av~ya~-----------~QaVq~~LAd 283 (520)
T PTZ00457 219 --DSVVFENT--PAADVVGVVGEGFKDAMITLFTEQYLYAASLLGIMKRVVQELRGSNA-----------EEGATDTVAS 283 (520)
T ss_pred --CEEEECCC--CHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhHHHHHHHH
Confidence 69999997 99999999999999999999999999999999999999999999986 4789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCchhHHHHHHHHHH---HHHHHHHHHHHH
Q psy1215 203 MSLKLESARLLTWRAAYLKDNK-QPFTKEAAMAKLAAS---ETATYNAHQAIQ 251 (260)
Q Consensus 203 ~~~~l~~~~a~~~~~~~~~~~~-~~~~~~~~~~k~~~~---~~~~~~~~~~~~ 251 (260)
|...++++|++++.+++.+|.+ .+...+++++|+|++ +.++.++++++|
T Consensus 284 ma~~ieAarsl~y~AA~~~D~g~~d~~~eAa~ak~~~s~~~e~~~~~~~~~~~ 336 (520)
T PTZ00457 284 FACAMYAMESTLYALTANLDLPTEDSLLECTLVSAFVQSTTNQLLSILETATP 336 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHhhhhHHHHHHHhhhhcc
Confidence 9999999999999999999987 457899999999999 999999998876
No 42
>KOG0135|consensus
Probab=99.90 E-value=5.4e-23 Score=176.16 Aligned_cols=211 Identities=25% Similarity=0.364 Sum_probs=180.5
Q ss_pred cccccEEEEe--CCeEEEe-----eeeeeeeCCC-CCcEEEEEEEeCCCCCCCceEEEEEeCC-------CCCeeecccC
Q psy1215 50 GAASTVAKQD--SNGWTLN-----GTKAWITNGY-ESEATVVFATTDKSKKHKGISAFIVDKP-------TKGLSLGKKE 114 (260)
Q Consensus 50 ~~~~~~a~~~--~~g~~l~-----G~k~~~s~~~-~a~~~~v~a~~~~~~~~~~~~~~~v~~~-------~~gv~~~~~~ 114 (260)
..++|+|+.| .+.|+|| ..|.|+.|+. +|.+.+|+++.--++...++..|+|+-. -|||+|.|+-
T Consensus 172 ~~I~TtatyDP~t~EfVinTP~~~A~K~WiGn~a~~athavvfa~L~~~g~n~G~H~FiiqIRdpkT~~t~PgV~igD~G 251 (661)
T KOG0135|consen 172 KGIQTTATYDPTTEEFVINTPDFSAIKCWIGNAAKHATHAVVFAQLHVPGQNHGLHGFIIQIRDPKTLQTLPGVRIGDCG 251 (661)
T ss_pred cceeeeeeecCCCCeeEecCCcHHHHHHHhccccccceEEEEEEEeeecCccCceeeEEEEeecccccCCCCCceecccc
Confidence 5688999998 5789998 6799999997 6999999999975445568888998843 3899999999
Q ss_pred CcccCCCCCeeeEEEeceeeCCCCccCCC----------------CccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q psy1215 115 DKLGINASSTCSLIFEDCSIPAENLLGEP----------------GMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVE 178 (260)
Q Consensus 115 ~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~----------------~~g~~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~ 178 (260)
++.|++|.+++-+.|+|++||.|++|.+- ++-|......+..+|+++++.++|.++-++-+|++
T Consensus 252 ~K~GlnGVDNG~l~F~nvRIPRenLLNr~gDVtpDG~YvSs~k~~~qrfgA~L~~Ls~GRvgIa~~ai~~lkla~tIAIR 331 (661)
T KOG0135|consen 252 HKIGLNGVDNGFLWFDNVRIPRENLLNRFGDVTPDGKYVSSFKDPSQRFGASLGSLSSGRVGIASSAIGALKLALTIAIR 331 (661)
T ss_pred cccccccccCceEEEecccCchHHHhhhccCcCCCCeeeccCCChhhhhchhhcccccchhHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999998432 22234456778899999999999999999999999
Q ss_pred HHhhccccC-------cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----------CCchhHHHHHHHHHHHH
Q psy1215 179 YASKRTAFG-------QPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNK----------QPFTKEAAMAKLAASET 241 (260)
Q Consensus 179 ~~~~r~~~g-------~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~----------~~~~~~~~~~k~~~~~~ 241 (260)
|...|+||| .+|.++|.-|.||-...+..++.+.+..+......+. .+....++..|-+++..
T Consensus 332 YS~sRRQFGP~~~geEv~iLeYp~qQ~RL~P~LAaaya~~fas~~l~~~y~E~~~~~~~~~n~keiHALsSg~K~~~TW~ 411 (661)
T KOG0135|consen 332 YSLSRRQFGPTKNGEEVPILEYPSQQYRLLPYLAAAYALSFASKYLVMIYVERTPRTNEGVNSKEIHALSSGLKPVATWH 411 (661)
T ss_pred hHHhHhhhCCCCCCCcceeeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHhccchhhhHh
Confidence 999999997 5788999999999999999999998888877655431 23345567789999999
Q ss_pred HHHHHHHHHHccCCCCcCC
Q psy1215 242 ATYNAHQAIQIPIITKYLL 260 (260)
Q Consensus 242 ~~~~~~~~~~~~Gg~g~~~ 260 (260)
..++.++|.+.|||+||++
T Consensus 412 ~~~~LqecREAcGGhGYl~ 430 (661)
T KOG0135|consen 412 NMRALQECREACGGHGYLQ 430 (661)
T ss_pred hHHHHHHHHHHhccchHHH
Confidence 9999999999999999974
No 43
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0055114 oxidation-reduction process; PDB: 2EBA_A 1RX0_C 1R2J_A 2OKU_A 3MKH_C 2JIF_C 3GQT_D 3EON_D 3EOM_C 3D6B_A ....
Probab=99.76 E-value=2.3e-17 Score=124.93 Aligned_cols=116 Identities=40% Similarity=0.524 Sum_probs=112.5
Q ss_pred CccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy1215 144 GMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDN 223 (260)
Q Consensus 144 ~~g~~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~ 223 (260)
|+||..+...+..+|+.+++.++|.++.+++.+.+|+++|.++|+++.++|.++++++++..++++++++++.++..++.
T Consensus 1 g~G~~~~~~~l~~~R~~~~~~~~g~~~~~l~~a~~~~~~r~~~g~~l~~~~~v~~~la~~~~~~~a~~~~~~~~~~~~~~ 80 (150)
T PF00441_consen 1 GQGWAVALDTLNHERLMIAAMALGIARRALDEAIEYARRRRQFGKPLAEHPAVRRRLADMAARLEAMRALVYRAARRLDA 80 (150)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccchhhhHHHHHhhccchhhhhcccccccccccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 224 KQPFTKEAAMAKLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 224 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
+.....+.+++|+++++.+.++++.+++++|+.||.
T Consensus 81 ~~~~~~~~a~~K~~~t~~~~~~~~~~~~l~G~~g~~ 116 (150)
T PF00441_consen 81 GQNDPVEAAIAKYFATELAQDIAEEAMQLLGGRGLT 116 (150)
T ss_dssp TSSTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGB
T ss_pred ccccccccchhhhhcccccccchhhhhhhhhhhhhc
Confidence 888899999999999999999999999999999985
No 44
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.71 E-value=5.7e-16 Score=132.57 Aligned_cols=196 Identities=17% Similarity=0.153 Sum_probs=140.2
Q ss_pred EEeCCeEEEeeeeeeeeCCCCCcEEEEE-EEeCCCCCCCceEEEEEeCCCCCeeecccCC-cccC--CCCC---------
Q psy1215 57 KQDSNGWTLNGTKAWITNGYESEATVVF-ATTDKSKKHKGISAFIVDKPTKGLSLGKKED-KLGI--NASS--------- 123 (260)
Q Consensus 57 ~~~~~g~~l~G~k~~~s~~~~a~~~~v~-a~~~~~~~~~~~~~~~v~~~~~gv~~~~~~~-~~G~--~~~~--------- 123 (260)
.+.++|.+|+|.|..+|+++.+|.++|+ .+.-..++.+....|.+|.|+|||++....+ ..+. .+.+
T Consensus 176 ee~~dGIVVrGAK~~aT~~a~tdei~V~Pt~~~~~~d~dfAv~FaiP~dt~GvK~i~r~s~~~~~~~~~g~fd~plssrf 255 (493)
T COG2368 176 EETEDGIVVRGAKALATGSALTDEIFVLPTRSMQEDDKDFAVAFAIPMDTEGVKFICRRSYELGRGAEGGPFDYPLSSRF 255 (493)
T ss_pred EEecCceEEEChHHHhccccccceEEEeeccccCCCCCceEEEEEcccCCCceEEEecCcchhhcccCCCCCCCcccccc
Confidence 4458899999999999999999999998 3333333456778899999999999864432 2222 1122
Q ss_pred ---eeeEEEeceeeCCCCccCCCCc----cHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccchhH
Q psy1215 124 ---TCSLIFEDCSIPAENLLGEPGM----GFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSI 196 (260)
Q Consensus 124 ---~~~~~f~~v~Vp~~~vl~~~~~----g~~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v 196 (260)
-+-++||||+||||+|+-...- .+..........+...+.+-.+.++..+-.+...++.- .+.++++|
T Consensus 256 de~dailVfDdVfVPWERVf~y~d~~~~~~~~~~~~Fa~~~~~q~~~~k~~k~d~i~G~~~~~~~~~-----Gv~~~~hI 330 (493)
T COG2368 256 DENDAILVFDDVFVPWERVFIYRDLERAYAWYAVSGFARLHRQQAVGRKAVKLDFILGAAYLIAETN-----GVEEFRHI 330 (493)
T ss_pred ccCceEEEecccccchhheeeeccHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhh-----CccchhhH
Confidence 2569999999999999854421 22221122234444445555555444444443333332 25789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q psy1215 197 QQKIADMSLKLESARLLTWRAAYLKDNKQ-----PFTKEAAMAKLAASETATYNAHQAIQIPIITK 257 (260)
Q Consensus 197 ~~~la~~~~~l~~~~a~~~~~~~~~~~~~-----~~~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g 257 (260)
|++|++|.+..+.+.++...++....... |+...+...|+++.....++...+.++.||.-
T Consensus 331 q~kl~Emi~~~e~~~al~~Aa~~~a~~~~~G~~~Pn~~~~n~~r~~~~~~~~~~~~~l~~i~gg~~ 396 (493)
T COG2368 331 QEKLGEMIALLELMWALSDAAAEEAQKNPNGAWLPNPAYANVGRVYAPKAYPRIKEILQDISGGGI 396 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCCceecCHHHHhhHHHhcccchHHHHHHHHHHhcCce
Confidence 99999999999999999999988766543 77788899999999999999999988887753
No 45
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Shigella, Photorhabdus and Pasteurella. The family modelled by this alignment is narrowly limited to gammaproteobacteria to exclude other aromatic hydroxylases involved in various secondary metabolic pathways. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=99.71 E-value=8.3e-16 Score=135.74 Aligned_cols=194 Identities=12% Similarity=0.036 Sum_probs=133.1
Q ss_pred EEEeCCeEEEeeeeeeeeCCCCCcEEEE-EEEeC-CCCCCCceEEEEEeCCCCCeeecccCCcccCC------CC-----
Q psy1215 56 AKQDSNGWTLNGTKAWITNGYESEATVV-FATTD-KSKKHKGISAFIVDKPTKGLSLGKKEDKLGIN------AS----- 122 (260)
Q Consensus 56 a~~~~~g~~l~G~k~~~s~~~~a~~~~v-~a~~~-~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~------~~----- 122 (260)
..++++|.+|+|.|..+|+++.+|.++| ..... ..+..+....|.||.++||+++.... ...+. ..
T Consensus 178 Vee~~dGIVVrGAK~~aT~a~~a~ei~V~~~~~~~~~~d~dyAvaFavP~dtpGlk~IcR~-s~~~~~~~~~~~fD~Pls 256 (519)
T TIGR02310 178 EEERDDGIVVSGAKVVATNSALTHYNFIGFGSAQIIGDNDDFALMFIAPMDAEGVKLICRH-SYELVAGATGSPFDYPLS 256 (519)
T ss_pred EEEcCCcEEEeCHHHHhcccchhcceeeccCcccccCCCCCeEEEEEeEcCCCceEEEeCC-chhhccccCCCCCcCccc
Confidence 3456789999999999999999999988 43331 11234566789999999999996443 22211 11
Q ss_pred -----CeeeEEEeceeeCCCCccCCCCcc----HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccc
Q psy1215 123 -----STCSLIFEDCSIPAENLLGEPGMG----FKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKL 193 (260)
Q Consensus 123 -----~~~~~~f~~v~Vp~~~vl~~~~~g----~~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~ 193 (260)
.-+-++||||+||||+|+-..+.. +.........+....+.+.++.++-.+-.+...+..- -+.++
T Consensus 257 srfdE~Da~vVFDdVfVPWErVF~~gd~e~~~~~~~~~~~~~~~~~q~~~r~~~k~dfl~G~a~~~ae~~-----G~~~~ 331 (519)
T TIGR02310 257 SRFDENDAILVMDSVFIPWENVLIYRDFERCRTWAQYGGFARLFPMQACTRLAVKLDFITGLLHKALQCT-----GVLEF 331 (519)
T ss_pred cccCCceEEEEeCCcccchHHceecCCHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----Ccccc
Confidence 127899999999999998544311 1111111111112222244555555555444444332 25689
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCchhHHHHHHHHHHHHHHHHHHHHHHccCC
Q psy1215 194 QSIQQKIADMSLKLESARLLTWRAAYLKDNK-----QPFTKEAAMAKLAASETATYNAHQAIQIPII 255 (260)
Q Consensus 194 ~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~-----~~~~~~~~~~k~~~~~~~~~~~~~~~~~~Gg 255 (260)
++||++|+++...++.+++++..+....... .+.......+|.+.++...++.+.+.+++||
T Consensus 332 ~hVqekl~Eli~~~E~~~a~~~Aa~~~~~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~~~ag 398 (519)
T TIGR02310 332 RGVQAQMGEVVAWRNLFWTLTDAMAGSAYQWKNGAQLPSAQALQTYRVMAPMAYHTIKKIIEQTVTS 398 (519)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEeeCHHHHHHHHHHhhhhhHHHHHHHHHHccC
Confidence 9999999999999999999999888765543 2677888999999999999999988756554
No 46
>KOG0136|consensus
Probab=99.58 E-value=5e-14 Score=124.01 Aligned_cols=211 Identities=21% Similarity=0.163 Sum_probs=162.8
Q ss_pred cccccEEEEeCC--eEEEe-----eeeeeeeCCC-CCcEEEEEEEeCCCCCCCceEEEEEeCC-------CCCeeecccC
Q psy1215 50 GAASTVAKQDSN--GWTLN-----GTKAWITNGY-ESEATVVFATTDKSKKHKGISAFIVDKP-------TKGLSLGKKE 114 (260)
Q Consensus 50 ~~~~~~a~~~~~--g~~l~-----G~k~~~s~~~-~a~~~~v~a~~~~~~~~~~~~~~~v~~~-------~~gv~~~~~~ 114 (260)
..++|+|+.+.. .|+|| ..|+|-.+.+ .+++.+|.|+.--.+...++..|+||.. .|||++.+.-
T Consensus 159 ~~LET~AtyD~~T~eFVl~TPt~ta~KWWPGgLG~ssnhAvV~AqL~~~gk~~G~h~FiV~lRd~~th~pL~Gi~iGDIG 238 (670)
T KOG0136|consen 159 RGLETTATYDPKTQEFVLNTPTLTATKWWPGGLGKSSNHAVVVAQLITKGKCYGPHPFIVQLRDEDTHKPLPGITVGDIG 238 (670)
T ss_pred cccceeeeecCCcceEEecCCCcceecccCCccccccchheeeeeeeecccccccceeEEEccCccccCCCCCCeecCCC
Confidence 678899999864 68887 8899998887 5789999999975445567889999953 3899999999
Q ss_pred CcccCCCCCeeeEEEeceeeCCCCccCCC----CccH-------HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy1215 115 DKLGINASSTCSLIFEDCSIPAENLLGEP----GMGF-------KIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKR 183 (260)
Q Consensus 115 ~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~----~~g~-------~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~~~~~r 183 (260)
.+||..+.+++-+.||||+||.++.|-+- .+|. .......-..|..+..-..=..-.+.-+|.+|+..|
T Consensus 239 ~Kmg~ng~dNGfL~f~nvRIPR~nmLmr~~kV~~dGtyv~p~~~~l~Y~tMv~vRs~mv~d~a~~La~A~tIAtRYSaVR 318 (670)
T KOG0136|consen 239 PKMGFNGVDNGFLGFDNVRIPRTNMLMRHAKVEPDGTYVKPPHPKLGYGTMVYVRSLMVMDQARFLAKAATIATRYSAVR 318 (670)
T ss_pred ccccccCCccceeeecceeechHhhhhhhheecCCCccccCCccccceeeeEEEeehhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999987321 1121 111122233444444444445566778899999999
Q ss_pred cccC-------cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCC-----CCchhHHHHHHHHHHHHHHH
Q psy1215 184 TAFG-------QPIIKLQSIQQKIADMSLKLESARLLTWRAAYLK-------DNK-----QPFTKEAAMAKLAASETATY 244 (260)
Q Consensus 184 ~~~g-------~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~-------~~~-----~~~~~~~~~~k~~~~~~~~~ 244 (260)
.|+. .-|.|++.-|.||-...+..++-+..-.+..+.. +.+ ++....++.+|..++..+..
T Consensus 319 RQ~~i~pg~~E~qIlDyqTQQ~rlFP~LA~ayAf~~~g~~l~~~Y~~~~~~l~~g~~s~LpeLHaLS~gLKa~~T~~~~~ 398 (670)
T KOG0136|consen 319 RQSEIRPGQPEVQILDYQTQQYRLFPQLARAYAFRFVGEELWELYEDVLKELENGNFSRLPELHALSAGLKAVVTWDTAQ 398 (670)
T ss_pred hccCCCCCCCCceeeechhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhchHHHHHHhhhHHHhhhhhhh
Confidence 9883 5799999999999999998888887777666533 222 24456678899999999999
Q ss_pred HHHHHHHccCCCCcCC
Q psy1215 245 NAHQAIQIPIITKYLL 260 (260)
Q Consensus 245 ~~~~~~~~~Gg~g~~~ 260 (260)
-++.|.+.|||+||.+
T Consensus 399 GIE~~R~aCGGHGYs~ 414 (670)
T KOG0136|consen 399 GIEQCRLACGGHGYSQ 414 (670)
T ss_pred HHHHHHHhcCCccchh
Confidence 9999999999999963
No 47
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3AFE_C 3AFF_A 2JBT_D 2JBS_C 2JBR_B 2RFQ_B 2OR0_B.
Probab=99.34 E-value=2.9e-11 Score=89.78 Aligned_cols=101 Identities=26% Similarity=0.292 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc--cCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCCc----h
Q psy1215 159 IGIASQALGIAQASLDCAVEYASKRTA--FGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKD----NKQPF----T 228 (260)
Q Consensus 159 ~~~~a~~~G~~~~~l~~~~~~~~~r~~--~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~----~~~~~----~ 228 (260)
+.++++++|+++++++.+.+++++|.. .+.++.+.|.+|.+++++.+.+++++++++.+++.++ .+.+. .
T Consensus 1 L~~aa~~lG~A~~al~~~~~~~~~r~~~~~~~~~~~~p~~q~~lgea~~~~~aa~~~l~~~~~~~~~~~~~g~~~~~~~~ 80 (134)
T PF08028_consen 1 LSFAAVYLGIARGALDEFVEYLRGRVRASGGAPLADDPYIQARLGEAAARLDAARALLYRAARRLWEAADAGEELTPEER 80 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSBCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----HHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHH
Confidence 468899999999999999999999887 5789999999999999999999999999999999844 44332 3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 229 KEAAMAKLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 229 ~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
....+.|.++.+.|.++++.+++++||.++.
T Consensus 81 ~~~~~~~~~a~~~a~~av~~l~~~~G~~a~~ 111 (134)
T PF08028_consen 81 ARLRAAKAHAARLAREAVDRLFRLAGGSALY 111 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSGGGGGB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhChHhhh
Confidence 4456779999999999999999999999875
No 48
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=99.19 E-value=7.8e-11 Score=95.92 Aligned_cols=84 Identities=21% Similarity=0.310 Sum_probs=60.3
Q ss_pred EEeCCeEEEeeeeeeeeCCCCCcEEEEEEEeC-CCCCCCceEEEEEeCCCCCeeecccCCcccCC--CCC----------
Q psy1215 57 KQDSNGWTLNGTKAWITNGYESEATVVFATTD-KSKKHKGISAFIVDKPTKGLSLGKKEDKLGIN--ASS---------- 123 (260)
Q Consensus 57 ~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~~~-~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~--~~~---------- 123 (260)
.++++|.+|+|.|...|+++.+|.++|+.... ..++.+....|.||.++||+++....+....+ ...
T Consensus 167 ee~~dGIvVrGAK~~~T~a~~adei~V~p~~~~~~~d~dyAv~FavP~~tpGlk~i~R~s~~~~~~~~~D~PlssrfdE~ 246 (264)
T PF11794_consen 167 EETDDGIVVRGAKMLATGAPYADEILVFPTRAMRPGDEDYAVAFAVPMNTPGLKIICRESYADGRRSPFDHPLSSRFDEM 246 (264)
T ss_dssp EE-SSEEEEEEEEEEEETGCCSSEEEE--SSSSTTCCGGG-EEEEEETT-TTEEEEE---TTGCCG-TTT-TTTTS----
T ss_pred EEcCCCEEEeChhhhhcCCcccccEEEeeccCCCCCCCceEEEEEccCCCCCEEEEeCCCCCCCccccCcCCcccccCCc
Confidence 45678999999999999999999999987665 33345677889999999999996544333322 111
Q ss_pred eeeEEEeceeeCCCCcc
Q psy1215 124 TCSLIFEDCSIPAENLL 140 (260)
Q Consensus 124 ~~~~~f~~v~Vp~~~vl 140 (260)
-+-++||||+||||+|+
T Consensus 247 Da~vvFDdVfVPWeRVF 263 (264)
T PF11794_consen 247 DALVVFDDVFVPWERVF 263 (264)
T ss_dssp EEEEEEEEEEEEGGGEE
T ss_pred eEEEEECCcccchhhcc
Confidence 28899999999999986
No 49
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=99.13 E-value=1.9e-10 Score=70.43 Aligned_cols=39 Identities=38% Similarity=0.675 Sum_probs=35.9
Q ss_pred cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEEEeC
Q psy1215 50 GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTD 88 (260)
Q Consensus 50 ~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~~~ 88 (260)
.++++++++++++|+|||+|.|+++++.||+++|++|++
T Consensus 14 ~~~~t~a~~~~~~~~L~G~K~~v~~~~~a~~~~v~ar~d 52 (52)
T PF02770_consen 14 AAVETTARRDGDGYVLNGEKRFVSNAPDADWFLVFARTD 52 (52)
T ss_dssp GG-SSEEEEETTEEEEEEEEEEEETTTTESEEEEEEEES
T ss_pred ccCEEEeecccceEEEeeEEEEECCcCccCEEEEEEEEC
Confidence 578899999999999999999999999999999999974
No 50
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1.3.99.3 from EC) are enzymes that catalyse the first step in each cycle of beta-oxidation in mitochondion. Acyl-CoA dehydrogenases [, , ] catalyze the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with concommitant reduction of enzyme-bound FAD. Reoxidation of the flavin involves transfer of electrons to ETF (electron transfering flavoprotein). These enzymes are homodimers containing one molecule of FAD. The monomeric enzyme is folded into three domains of approximately equal size. The N-terminal and the C-terminal are mainly alpha-helices packed together, and the middle domain consists of two orthogonal beta-sheets. The flavin ring is buried in the crevise between two alpha-helical domains and the beta-sheet of one subunit, and the adenosine pyrophosphate moiety is stretched into the subunit junction with one formed by two C-terminal domains []. The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain, on dimerisation, the N-terminal of one molecule extends into the other dimer and lies on the surface of the molecule.; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 2WBI_B 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2DVL_A 1UKW_B 3MDD_B 1UDY_C 3MDE_B ....
Probab=98.10 E-value=2.3e-06 Score=61.23 Aligned_cols=49 Identities=39% Similarity=0.750 Sum_probs=46.0
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~ 49 (260)
+|++.+++|+++.+.|...+.|+++.+|.++|+++++.|++++.+|++|
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~G~~~~~~p~~~ 54 (113)
T PF02771_consen 6 ALREEAREFAEEEIAPHAAEWDEDGRFPREVWRALGEAGLLGLAVPEEY 54 (113)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHTTTTSTTSCGGG
T ss_pred HHHHHHHHHHHHHchHHHHHHHHhCCCCHHHHHHHHHHHHhhhhccccc
Confidence 4789999999999999999998888999999999999999999999988
No 51
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. This domain is also found in pyoverdin chromophore biosynthetic protein PvcC, which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=97.43 E-value=0.0043 Score=49.31 Aligned_cols=68 Identities=16% Similarity=0.037 Sum_probs=56.3
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCchhHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q psy1215 190 IIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNK-----QPFTKEAAMAKLAASETATYNAHQAIQIPIITK 257 (260)
Q Consensus 190 l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~-----~~~~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g 257 (260)
+.++++||++|+++...++.+++++..+......+ .|+......+|.+..+...++++.+.+++||.-
T Consensus 44 ~~~~~hVqekl~Eli~~~E~~~a~~~Aae~~a~~~~~G~~~P~~~~~~a~r~~~~~~y~r~~eil~~l~gg~l 116 (205)
T PF03241_consen 44 IDKFPHVQEKLGELIAYLETLRALLIAAEAEAEPDPSGVYVPNPLPLNAARNYFPKNYPRIVEILQDLGGGGL 116 (205)
T ss_dssp GTTSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE-TTSSEE--HHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCCeEeECHHHHHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 57799999999999999999999999888765442 267788999999999999999998877777653
No 52
>PTZ00457 acyl-CoA dehydrogenase; Provisional
Probab=92.90 E-value=1.7 Score=39.68 Aligned_cols=71 Identities=13% Similarity=0.074 Sum_probs=59.1
Q ss_pred ccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHccCC
Q psy1215 185 AFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPF-TKEAAMAKLAASETATYNAHQAIQIPII 255 (260)
Q Consensus 185 ~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~Gg 255 (260)
++|+.|.+.|.++.||+++.++++++-+.+-++...+..+.+. ..+..+++.||.+...++-..+-++...
T Consensus 428 ~~~~~i~~~q~~l~rlad~a~~lyam~a~~sra~~~~~~~~~~~~~e~~la~~fc~~a~~rv~~~~~~~~~~ 499 (520)
T PTZ00457 428 RSGSQVPYQQLLLNRLGEAASLLYAASAVASRASMCVSKGLPSAKVEGELASAFIAMAVSRARQLSEESCNV 499 (520)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3468899999999999999999999999999998888876543 4567899999999888887766666653
No 53
>KOG0137|consensus
Probab=92.78 E-value=2.4 Score=38.60 Aligned_cols=95 Identities=19% Similarity=0.115 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchhHHHHHHHH
Q psy1215 159 IGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQ-PFTKEAAMAKLA 237 (260)
Q Consensus 159 ~~~~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~-~~~~~~~~~k~~ 237 (260)
+.-++..+-.+...+..+++-... .+++.+-+.+.+.++||+..+.++++-+.+.++.+....+- ....+...+..|
T Consensus 508 L~~saq~~e~~~~~~~~~Ve~ll~--k~~k~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~igl~~aDhEl~~at~~ 585 (634)
T KOG0137|consen 508 LQDSAQKLESSLARFQQVVEKLLT--KHGKGIVEEQSVLQRLANVAINIYAMVAVISRASRSYSIGLPNADHELALATAI 585 (634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCCcchhHHHHHHHHH
Confidence 334555555555666666555544 35688999999999999999999999999999999888874 456888999999
Q ss_pred HHHHHHHHHHHHHHccCC
Q psy1215 238 ASETATYNAHQAIQIPII 255 (260)
Q Consensus 238 ~~~~~~~~~~~~~~~~Gg 255 (260)
|++...++...+.++.++
T Consensus 586 C~ea~~~~~~~l~~~~~~ 603 (634)
T KOG0137|consen 586 CSEASLRVLRWLWAASSG 603 (634)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 999999999888887766
No 54
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=49.14 E-value=49 Score=24.59 Aligned_cols=62 Identities=10% Similarity=0.243 Sum_probs=32.8
Q ss_pred EeCCeEEEeeeeeeeeCCCCCcEEEEEEEeCCCCCCCceEEEEEeCC-----CCCeeecccCC--------cccCCCCCe
Q psy1215 58 QDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKP-----TKGLSLGKKED--------KLGINASST 124 (260)
Q Consensus 58 ~~~~g~~l~G~k~~~s~~~~a~~~~v~a~~~~~~~~~~~~~~~v~~~-----~~gv~~~~~~~--------~~G~~~~~~ 124 (260)
.+.+.|.|+|+|...--. .++....+.+.++|.. -|.|++....+ ..+.....+
T Consensus 66 a~~~~WlV~Grrrg~f~~-------------~~~~~~~~~l~LIPL~~G~L~lP~V~i~~~~~~~~~~~~~~~~~~~~~~ 132 (147)
T PF12584_consen 66 ADSDNWLVSGRRRGVFSL-------------SDGSEHEIPLTLIPLRAGYLPLPKVEIRPYDPSNISKGDSMPRLEPFPP 132 (147)
T ss_pred cCCCcEEEeccCcceEEe-------------cCCCeEEEEEEEEecccceecCCEEEEEeccCCCcccccccccccCCCc
Confidence 445679999998732211 1112234556666654 36677643331 123334566
Q ss_pred eeEEEece
Q psy1215 125 CSLIFEDC 132 (260)
Q Consensus 125 ~~~~f~~v 132 (260)
+++.+.|.
T Consensus 133 ~ev~~~n~ 140 (147)
T PF12584_consen 133 CEVDYRNA 140 (147)
T ss_pred eeEEEcCC
Confidence 77777653
No 55
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed
Probab=42.67 E-value=3.2e+02 Score=26.70 Aligned_cols=57 Identities=14% Similarity=0.227 Sum_probs=40.9
Q ss_pred cCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHH
Q psy1215 186 FGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYNA 246 (260)
Q Consensus 186 ~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 246 (260)
.|..|...+.+..||+++..+++++-+.+-+.- +++.+. .+...++.++.+...++-
T Consensus 559 ~g~~l~~~e~~~~Rl~d~~~~ly~~~a~l~r~~---~~~~~~-~~~~l~~~~~~~~~~~~~ 615 (777)
T PRK09463 559 LGGSLKRRERLSARLGDILSQLYLASAVLKRYE---DEGRPE-ADLPLVHWAVQDALYQAE 615 (777)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCch-hHHHHHHHHHHHHHHHHH
Confidence 378899999999999999999999999887775 333322 234566666655444443
No 56
>PF15631 Imm-NTF2-2: NTF2 fold immunity protein
Probab=36.60 E-value=48 Score=21.08 Aligned_cols=16 Identities=25% Similarity=0.582 Sum_probs=12.0
Q ss_pred EEEEeCCeEEEeeeee
Q psy1215 55 VAKQDSNGWTLNGTKA 70 (260)
Q Consensus 55 ~a~~~~~g~~l~G~k~ 70 (260)
.++.+++.|+|+|+..
T Consensus 25 ~v~~~~~~WiV~Gtl~ 40 (66)
T PF15631_consen 25 RVTLDGDSWIVEGTLP 40 (66)
T ss_pred EEecCCCeEEEEeecC
Confidence 4566777899999973
No 57
>PF11745 DUF3304: Protein of unknown function (DUF3304); InterPro: IPR021733 This is a family of bacterial proteins of unknown function.
Probab=28.99 E-value=1.5e+02 Score=21.12 Aligned_cols=24 Identities=8% Similarity=0.039 Sum_probs=18.7
Q ss_pred CCCceEEEEEeCC-CCCeeecccCC
Q psy1215 92 KHKGISAFIVDKP-TKGLSLGKKED 115 (260)
Q Consensus 92 ~~~~~~~~~v~~~-~~gv~~~~~~~ 115 (260)
+.+..+++-+|+. .||+++.-.|.
T Consensus 49 GGg~~CC~~~p~~W~pg~tv~V~W~ 73 (118)
T PF11745_consen 49 GGGFTCCVSLPRKWRPGLTVKVEWE 73 (118)
T ss_pred CCceEEEEEcCCCCCCCCEEEEEEe
Confidence 3445688889977 89998887787
No 58
>PHA02087 hypothetical protein
Probab=28.52 E-value=1e+02 Score=19.52 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=21.4
Q ss_pred CCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEece
Q psy1215 92 KHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDC 132 (260)
Q Consensus 92 ~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v 132 (260)
+.+.+...+|+.+ |+.|.-+.+. +.+-++|||-
T Consensus 41 ~nk~v~y~lvdsd--g~~ielpe~~------ggggi~fdde 73 (83)
T PHA02087 41 PNKLVQYMLVDSD--GVKIELPESE------GGGGITFDDE 73 (83)
T ss_pred CccceeEEEEcCC--CcEEECCccc------CCCceeeccH
Confidence 4456667788887 8877544433 3366888873
No 59
>PF04115 Ureidogly_hydro: Ureidoglycolate hydrolase ; InterPro: IPR007247 Ureidoglycolate hydrolase (3.5.3.19 from EC) carries out the third step in the degradation of allantoin.; GO: 0004848 ureidoglycolate hydrolase activity, 0000256 allantoin catabolic process; PDB: 1YQC_B 1XSR_A 2BDR_B 1XSQ_A.
Probab=25.57 E-value=1.6e+02 Score=22.40 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=28.3
Q ss_pred eeeeeeeCCCCCcEEEEEEEeCCCCCCCceEEEEEeCCCCCeeec-ccCCc
Q psy1215 67 GTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKGLSLG-KKEDK 116 (260)
Q Consensus 67 G~k~~~s~~~~a~~~~v~a~~~~~~~~~~~~~~~v~~~~~gv~~~-~~~~~ 116 (260)
+.-.|+......+++++.|..++..+...+..|+++.+ .||.+. ..|+.
T Consensus 80 tsQ~fiPl~~~~~~lvvVA~~~~~Pd~~~lrAF~~~~g-qgV~~~~GvWH~ 129 (165)
T PF04115_consen 80 TSQAFIPLDGSPWYLVVVAPDDDGPDPETLRAFLAPGG-QGVNYHRGVWHH 129 (165)
T ss_dssp B-EEEEESBS---EEEEEEESSSS-ECCCEEEEEE-SS--EEEE-TT-EE-
T ss_pred eeEEEEECCCCccEEEEEcCCCCCCCccceEEEEEcCC-EEEEECCCceeC
Confidence 55567777775557878887554334578899999887 577774 55764
No 60
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
Probab=21.14 E-value=77 Score=21.29 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=25.0
Q ss_pred CHHHHHHHHHhccc--------CchhhhhhhcCCCCHHHHHHHHHcCC
Q psy1215 1 MLYKTVRDFTEGEL--------KPIAAKLDREHLYPKEQIKKMGELGL 40 (260)
Q Consensus 1 ~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~G~ 40 (260)
+|++++++++.... .+....+.-.|.+..++.+.|.+.||
T Consensus 40 aL~~dL~~~l~~~~~~~~~~~V~~~~g~i~IkG~~~~~Vk~wL~~~GF 87 (87)
T PF05046_consen 40 ALKKDLRKFLGEKPKKKIDVRVNELTGHIEIKGDHVEEVKKWLLEKGF 87 (87)
T ss_pred HHHHHHHHHhhhhcCCCcceEEeecCCEEEEcCccHHHHHHHHHHCcC
Confidence 36777888874433 22223333345567888889988886
Done!