Query psy1215
Match_columns 260
No_of_seqs 114 out of 1364
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 20:00:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfd_A Acyl-COA dehydrogenase; 100.0 5.8E-51 2E-55 354.8 28.2 259 1-259 25-358 (393)
2 3r7k_A Probable acyl COA dehyd 100.0 1.9E-50 6.3E-55 352.6 29.1 258 1-259 35-368 (403)
3 2d29_A Acyl-COA dehydrogenase; 100.0 4.9E-50 1.7E-54 348.4 31.4 259 1-259 13-350 (387)
4 2vig_A Short-chain specific ac 100.0 5.2E-50 1.8E-54 348.6 31.6 259 1-259 12-345 (391)
5 2jif_A Short/branched chain sp 100.0 3E-50 1E-54 351.2 29.9 259 1-259 35-367 (404)
6 1ukw_A Acyl-COA dehydrogenase; 100.0 3E-50 1E-54 348.8 29.0 259 1-259 11-343 (379)
7 3p4t_A Putative acyl-COA dehyd 100.0 5.2E-50 1.8E-54 349.8 30.5 258 1-259 32-366 (403)
8 2pg0_A Acyl-COA dehydrogenase; 100.0 1.2E-49 4.2E-54 345.6 30.7 259 1-259 16-350 (385)
9 1egd_A Medium chain acyl-COA d 100.0 1.2E-49 4.2E-54 346.8 30.6 259 1-259 22-357 (396)
10 3nf4_A Acyl-COA dehydrogenase; 100.0 7.2E-50 2.4E-54 347.4 28.9 257 1-259 22-352 (387)
11 1buc_A Butyryl-COA dehydrogena 100.0 1.8E-49 6.2E-54 344.4 30.2 259 1-259 11-348 (383)
12 2dvl_A Acyl-COA dehydrogenase; 100.0 2.2E-49 7.4E-54 342.6 30.5 254 1-259 9-337 (372)
13 1ivh_A Isovaleryl-COA dehydrog 100.0 1.7E-49 5.9E-54 345.6 28.6 259 1-259 19-356 (394)
14 3ii9_A Glutaryl-COA dehydrogen 100.0 1.4E-49 4.9E-54 346.3 27.5 257 1-259 25-356 (396)
15 1rx0_A Acyl-COA dehydrogenase 100.0 9.5E-49 3.2E-53 340.8 30.2 258 1-259 25-357 (393)
16 3mpi_A Glutaryl-COA dehydrogen 100.0 4.9E-49 1.7E-53 343.2 26.4 258 1-259 11-348 (397)
17 3sf6_A Glutaryl-COA dehydrogen 100.0 2.7E-48 9.1E-53 339.0 29.5 252 1-259 36-363 (403)
18 3swo_A Glutaryl-COA dehydrogen 100.0 2.1E-48 7.1E-53 339.4 28.4 252 1-259 32-358 (399)
19 4hr3_A Putative acyl-COA dehyd 100.0 7.7E-49 2.6E-53 343.8 25.1 259 1-259 15-375 (415)
20 1r2j_A Protein FKBI; polyketid 100.0 1.3E-48 4.3E-53 337.1 25.2 252 4-259 2-328 (366)
21 2eba_A Putative glutaryl-COA d 100.0 7.5E-48 2.6E-52 334.4 28.3 254 1-259 17-346 (385)
22 2ix5_A Acyl-coenzyme A oxidase 100.0 1.2E-47 4.2E-52 337.3 29.5 254 1-259 61-389 (436)
23 3owa_A Acyl-COA dehydrogenase; 100.0 7.7E-48 2.6E-52 349.2 26.8 255 1-259 39-389 (597)
24 1siq_A GCD, glutaryl-COA dehyd 100.0 2.6E-46 8.9E-51 325.5 29.2 253 1-259 20-349 (392)
25 2z1q_A Acyl-COA dehydrogenase; 100.0 3.2E-46 1.1E-50 338.5 27.7 255 1-259 34-379 (577)
26 2uxw_A VERY-long-chain specifi 100.0 1.3E-45 4.4E-50 335.5 26.8 256 2-259 57-395 (607)
27 3mkh_A Nitroalkane oxidase; ox 100.0 6.6E-46 2.3E-50 327.3 23.1 259 1-259 13-380 (438)
28 2jbr_A P-hydroxyphenylacetate 100.0 5.9E-46 2E-50 326.1 21.4 256 1-259 39-378 (422)
29 2or0_A Hydroxylase; APC7385, r 100.0 8E-46 2.7E-50 324.5 21.5 256 1-259 24-365 (414)
30 2rfq_A 3-HSA hydroxylase, oxyg 100.0 5.8E-46 2E-50 323.5 20.4 255 2-259 12-350 (394)
31 2wbi_A Acyl-COA dehydrogenase 100.0 4.4E-45 1.5E-49 321.0 25.2 259 1-259 29-383 (428)
32 2c12_A Nitroalkane oxidase; ox 100.0 4.5E-45 1.5E-49 322.0 24.1 259 1-259 12-383 (439)
33 3m9v_A FAD-dependent oxidoredu 100.0 5.6E-43 1.9E-47 308.7 21.2 253 1-259 26-368 (439)
34 3mxl_A Nitrososynthase; flavin 100.0 1.6E-43 5.4E-48 308.3 16.8 253 1-259 15-357 (395)
35 3djl_A Protein AIDB; alpha hel 100.0 1.9E-37 6.4E-42 278.1 24.3 198 53-259 197-406 (541)
36 1w07_A Acyl-COA oxidase; oxido 100.0 1.1E-37 3.8E-42 286.0 17.6 257 1-259 33-405 (659)
37 2ddh_A Acyl-COA oxidase; beta 100.0 7.1E-35 2.4E-39 267.2 20.2 210 50-259 148-402 (661)
38 2yyk_A 4-hydroxyphenylacetate- 100.0 5.5E-33 1.9E-37 246.1 21.2 202 52-259 163-386 (481)
39 1u8v_A Gamma-aminobutyrate met 100.0 5E-32 1.7E-36 240.2 18.4 200 55-259 172-394 (490)
40 3hwc_A Chlorophenol-4-monooxyg 100.0 8.1E-31 2.8E-35 232.2 21.8 199 57-260 176-391 (515)
41 4g5e_A 2,4,6-trichlorophenol 4 100.0 2.2E-30 7.6E-35 229.8 22.2 200 56-260 176-392 (517)
42 3owa_A Acyl-COA dehydrogenase; 93.6 0.71 2.4E-05 41.7 11.5 83 168-252 466-550 (597)
43 2uxw_A VERY-long-chain specifi 85.1 8.2 0.00028 34.8 11.0 70 186-255 506-576 (607)
44 2z1q_A Acyl-COA dehydrogenase; 58.9 98 0.0034 27.5 11.6 59 187-251 469-527 (577)
45 3rf3_A Vinculin, metavinculin; 39.1 1.4E+02 0.0048 23.5 8.1 69 191-259 182-254 (258)
46 3jsb_A Protein L, RNA-directed 20.2 53 0.0018 24.5 2.1 27 33-69 78-104 (204)
No 1
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=5.8e-51 Score=354.83 Aligned_cols=259 Identities=40% Similarity=0.638 Sum_probs=243.2
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.+.|.+.+.|+++.+|.++|++|++.||+++.+|++|
T Consensus 25 ~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~ 104 (393)
T 3pfd_A 25 ALREAIRALAEKEIAPYAAEVDEKARFPEEALAALNSSGFSAIHVPEEYGGQGADSVATCIVIEEVARVDCSASLIPAVN 104 (393)
T ss_dssp HHHHHHHHHHHHHTGGGHHHHHHTTCCCHHHHHHHHHHTCSCTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchHHHHHhhhCCCCHHHHHHHHHCCCCCCCCChhHCCCCCCHHHHHHHHHHHHhhCchHHHHHHHH
Confidence 3789999999999999998999999999999999999999999999998
Q ss_pred -------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEEE
Q psy1215 50 -------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFAT 86 (260)
Q Consensus 50 -------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~ 86 (260)
.+++|+|++++|||+|||+|.|+||++.||+++|+++
T Consensus 105 ~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~ 184 (393)
T 3pfd_A 105 KLGTMGLILRGSEELKKQVLPAVASGEAMASYALSEREAGSDAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVMAV 184 (393)
T ss_dssp HHTTHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEE
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCcccCeeEEEEcCCEEEEeeEEEEecCCcccCEEEEEEE
Confidence 2357899999999999999999999999999999999
Q ss_pred eCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHHH
Q psy1215 87 TDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQAL 166 (260)
Q Consensus 87 ~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~~ 166 (260)
++++++.+++++|+||+++|||++.++|+++|+++++++++.||||+||++++||.++.|+......+...|+.+++.++
T Consensus 185 ~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~~ 264 (393)
T 3pfd_A 185 TDPDKGANGISAFMVHKDDEGFTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDHTRPTIGAQAV 264 (393)
T ss_dssp SCGGGGGGGEEEEEEETTSTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHTTHHHHHHHHH
T ss_pred eCCCCCCCceEEEEEECCCCCeEecCCCCcccCCCCCceEEEEccEEEcHHHcCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 97544456899999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHHHHHHH
Q psy1215 167 GIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQP-FTKEAAMAKLAASETATYN 245 (260)
Q Consensus 167 G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~-~~~~~~~~k~~~~~~~~~~ 245 (260)
|+++++++.+++|+++|.+||+++.++|.+|++|+++..+++++|+++++++..++.+.+ .....+++|.++++.+.++
T Consensus 265 G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~~~~~~~~~~~aK~~a~~~a~~~ 344 (393)
T 3pfd_A 265 GIAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEAARLMVYSAAARAERGEGDLGFISAASKCFASDVAMEV 344 (393)
T ss_dssp HHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988765 6678899999999999999
Q ss_pred HHHHHHccCCCCcC
Q psy1215 246 AHQAIQIPIITKYL 259 (260)
Q Consensus 246 ~~~~~~~~Gg~g~~ 259 (260)
++.++|++||.||+
T Consensus 345 ~~~a~q~~Gg~g~~ 358 (393)
T 3pfd_A 345 TTDAVQLFGGYGYT 358 (393)
T ss_dssp HHHHHHHTGGGGGB
T ss_pred HHHHHHHhchhhcc
Confidence 99999999999986
No 2
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus}
Probab=100.00 E-value=1.9e-50 Score=352.64 Aligned_cols=258 Identities=30% Similarity=0.454 Sum_probs=245.6
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.+.|.+.+.|+++.+|.++|++|++.||+++.+|++|
T Consensus 35 ~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~ 114 (403)
T 3r7k_A 35 ALSQMARSFVEREIAPKLAEWEHVGEIPRDLHLNAAEVGLLGIGFPEEVGGSGGNAIDSALVTEAILAAGGSTGVCAALF 114 (403)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHTSCCTHHHHHHHHHTCTTBTSCGGGTCCBCCHHHHHHHHHHHHHTTCCHHHHHHHC
T ss_pred HHHHHHHHHHHHhCChhHHHHHhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3789999999999999998999999999999999999999999999998
Q ss_pred ---------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEE
Q psy1215 50 ---------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVF 84 (260)
Q Consensus 50 ---------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~ 84 (260)
.+++|+|++++|||+|||+|.|+||+..||+++|+
T Consensus 115 ~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~a~~Ad~~~v~ 194 (403)
T 3r7k_A 115 THGIALPHIAANGSDALIERYVRPTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRADFVTTA 194 (403)
T ss_dssp THHHHSHHHHHHCCHHHHHHHHHHHHTTSCCEEEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEEEETTTTCSEEEEE
T ss_pred HhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEecCCCCCCChhhceEEEEEECCEEEEEEEEEcccCCccCCEEEEE
Confidence 24578999999999999999999999999999999
Q ss_pred EEeCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHH
Q psy1215 85 ATTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQ 164 (260)
Q Consensus 85 a~~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~ 164 (260)
++++++ +.+++++|+||+++|||++.++|+++|+++++++++.||||+||++++||.++.|+......+...|+.+++.
T Consensus 195 a~~~~~-~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~ 273 (403)
T 3r7k_A 195 VRTGGP-GYGGVSLLVIDKNSPGFEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQFQAERLGIAVQ 273 (403)
T ss_dssp EECSSS-SGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHTHHHHHHHHHHH
T ss_pred EEcCCC-CCCceEEEEEeCCCCCeEecCcccccCCCCCCceEEEEeeEEECHHHcCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 999764 4568999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Q psy1215 165 ALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATY 244 (260)
Q Consensus 165 ~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 244 (260)
++|+++++++.+++|+++|.+||+++.++|.+|++|+++.++++++|+++++++..+|.+.+.....+++|.++++.+.+
T Consensus 274 ~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~aK~~a~~~a~~ 353 (403)
T 3r7k_A 274 AYATAGRALDLAKSWARERETFGRPLTGRQIIRHKLAEMARQVDVACTYTRAVMQRWLAGEDVVAEVSMAKNTAVYACDY 353 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccCCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887888899999999999999
Q ss_pred HHHHHHHccCCCCcC
Q psy1215 245 NAHQAIQIPIITKYL 259 (260)
Q Consensus 245 ~~~~~~~~~Gg~g~~ 259 (260)
+++.++|++||.||+
T Consensus 354 v~~~a~q~~Gg~G~~ 368 (403)
T 3r7k_A 354 VVNEAVQIFGGMGYM 368 (403)
T ss_dssp HHHHHHHHHGGGGGB
T ss_pred HHHHHHHhcCCeEec
Confidence 999999999999996
No 3
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A*
Probab=100.00 E-value=4.9e-50 Score=348.37 Aligned_cols=259 Identities=46% Similarity=0.694 Sum_probs=243.2
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.+.|.+.+.|+++.+|.++|++|++.||+++.+|++|
T Consensus 13 ~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~ 92 (387)
T 2d29_A 13 QVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGAGLSTRLFARMVEAIAYYDGALALTVASH 92 (387)
T ss_dssp HHHHHHHHHHHHHTGGGHHHHHHHCCCCHHHHHHHHTTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 3788999999889999888889999999999999999999999999998
Q ss_pred --------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEE
Q psy1215 50 --------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFA 85 (260)
Q Consensus 50 --------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a 85 (260)
.++.|+|++++|||+|||+|.|+||+..||+++|++
T Consensus 93 ~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a 172 (387)
T 2d29_A 93 NSLATGHILLAGSEAQKEAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMA 172 (387)
T ss_dssp HHTHHHHHHHHCCHHHHHHHHHHHHTSSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEE
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEeCCCCCCCCHhhCceEEEEeCCEEEEEeEEeccCCCCcCCEEEEEE
Confidence 234689999999999999999999999999999999
Q ss_pred EeCCCC----CCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHH
Q psy1215 86 TTDKSK----KHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGI 161 (260)
Q Consensus 86 ~~~~~~----~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~ 161 (260)
+++++. +.+++++|+||++.|||++.++|+++|+++++++++.||||+||++++||.++.|+......+...|+.+
T Consensus 173 ~~~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~ 252 (387)
T 2d29_A 173 RTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGI 252 (387)
T ss_dssp ECSCCSCGGGTTTTEEEEEEECCSSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHHHHHHHHHHHHH
T ss_pred EeCCccccCCCCCCeEEEEEeCCCCCeeccCcccccCCCCCCeeEEEEeeEEECHHHcCCCCCccHHHHHHHHHHHHHHH
Confidence 987432 4457999999999999999899999999999999999999999999999999999998888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH
Q psy1215 162 ASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASET 241 (260)
Q Consensus 162 ~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 241 (260)
++.++|+++++++.+++|+++|.+||+|+.++|.+|++++++..+++++|++++++++.+|.+.+.....+++|.++++.
T Consensus 253 aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~~~aK~~a~~~ 332 (387)
T 2d29_A 253 AAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLKAAELKDAGRPFTLEAAQAKLFASEA 332 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccCCcchHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998777778899999999999
Q ss_pred HHHHHHHHHHccCCCCcC
Q psy1215 242 ATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 242 ~~~~~~~~~~~~Gg~g~~ 259 (260)
+.++++.++|++||.||+
T Consensus 333 a~~~~~~a~q~~Gg~g~~ 350 (387)
T 2d29_A 333 AVKACDEAIQILGGYGYV 350 (387)
T ss_dssp HHHHHHHHHHHHGGGGGS
T ss_pred HHHHHHHHHHhcCCeecC
Confidence 999999999999999986
No 4
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A*
Probab=100.00 E-value=5.2e-50 Score=348.57 Aligned_cols=259 Identities=68% Similarity=1.035 Sum_probs=243.4
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.+.|.+.+.|+++.+|.++|++|++.||+++.+|++|
T Consensus 12 ~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~ 91 (391)
T 2vig_A 12 MLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGAGLDYLAYAIAMEEISRGCASTGVIMSVN 91 (391)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTTSTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHhcCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3788999999989999988889999999999999999999999999998
Q ss_pred --------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEE
Q psy1215 50 --------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFA 85 (260)
Q Consensus 50 --------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a 85 (260)
.++.|+|++++|||+|||+|.|+||++.||+++|++
T Consensus 92 ~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a 171 (391)
T 2vig_A 92 NSLYLGPILKFGSKEQKQAWVTPFTSGDKIGCFALSEPGNGSDAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFA 171 (391)
T ss_dssp HHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEE
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCCCcccceeEEEEeCCEEEEeeEEEeecCCCcCCEEEEEE
Confidence 235689999999999999999999999999999999
Q ss_pred EeCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHH
Q psy1215 86 TTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQA 165 (260)
Q Consensus 86 ~~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~ 165 (260)
+++++++.+++++|+||++.|||++.++|+++|+++++++++.||||+||++++||.++.|+......+...|+.+++.+
T Consensus 172 ~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~ 251 (391)
T 2vig_A 172 STDRALQNKSISAFLVPMPTPGLTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQA 251 (391)
T ss_dssp ECCSSSTTSCEEEEEEESSCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTBHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEECcEEECHHHcCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 98754344579999999999999999999999999999999999999999999999999999888888999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHH
Q psy1215 166 LGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYN 245 (260)
Q Consensus 166 ~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 245 (260)
+|+++++++.+++|+++|.+||+|+.++|.+|++|+++.++++++|++++.+++.++.+.+.....+++|.++++.+.++
T Consensus 252 ~G~a~~al~~a~~ya~~R~~fg~~i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~~~aK~~a~~~a~~~ 331 (391)
T 2vig_A 252 LGIAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLLTWRAAMLKDNKKPFIKEAAMAKLAASEAATAI 331 (391)
T ss_dssp HHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987766778999999999999999
Q ss_pred HHHHHHccCCCCcC
Q psy1215 246 AHQAIQIPIITKYL 259 (260)
Q Consensus 246 ~~~~~~~~Gg~g~~ 259 (260)
++.++|++||.||+
T Consensus 332 ~~~a~q~~Gg~g~~ 345 (391)
T 2vig_A 332 SHQAIQILGGMGYV 345 (391)
T ss_dssp HHHHHHHHGGGGGB
T ss_pred HHHHHHhhCCeEec
Confidence 99999999999986
No 5
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Probab=100.00 E-value=3e-50 Score=351.21 Aligned_cols=259 Identities=39% Similarity=0.642 Sum_probs=243.3
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.+.|...+.|+++.+|.++|++|++.||+++.+|++|
T Consensus 35 ~l~~~~r~~~~~~~~p~~~~~d~~~~~~~~~~~~l~e~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~ 114 (404)
T 2jif_A 35 MIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGTGASFLSTVLVIEELAKVDASVAVFCEIQ 114 (404)
T ss_dssp HHHHHHHHHHHHHTGGGHHHHHHHTCCCHHHHHHHHHTTTTSSSSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHhhcCCCCHHHHHHHHHCCCCccCCchhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3789999999999999888889999999999999999999999999998
Q ss_pred -------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEEE
Q psy1215 50 -------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFAT 86 (260)
Q Consensus 50 -------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~ 86 (260)
.++.|+|++++|||+|||+|.|+||+..+|+++|+++
T Consensus 115 ~~~~~~~l~~~g~~~qk~~~l~~~~~g~~~~~a~tEp~~Gsd~~~~~t~A~~~g~g~vlnG~K~~is~a~~Ad~~~v~ar 194 (404)
T 2jif_A 115 NTLINTLIRKHGTEEQKATYLPQLTTEKVGSFCLSEAGAGSDSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMAN 194 (404)
T ss_dssp HHTHHHHHHHHCCHHHHHHHHHHHHHTCCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEE
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhCCCcceEEecCCCCCCChhhceeEEEEeCCEEEEEeEEEeecCCcccCEEEEEEE
Confidence 2356899999999999999999999999999999999
Q ss_pred eCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHHH
Q psy1215 87 TDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQAL 166 (260)
Q Consensus 87 ~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~~ 166 (260)
++++++.+++++|+||+++|||++.+.|+++|+++++++++.||||+||++++||.++.|+......+...|+.+++.++
T Consensus 195 ~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~~ 274 (404)
T 2jif_A 195 VDPTIGYKGITSFLVDRDTPGLHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQML 274 (404)
T ss_dssp SCGGGGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCCceEEEEEecCCCCeEeccCcccccCCCCceEEEEEccEEECHHHcCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 86433345789999999999999999999999999999999999999999999999999999888888999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHH
Q psy1215 167 GIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYNA 246 (260)
Q Consensus 167 G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 246 (260)
|+++++++.+++|+++|.+||+|+.++|.+|++|+++.++++++|++++.+++.++.+.+.....+++|.++++.+.+++
T Consensus 275 G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~~~aK~~a~e~a~~v~ 354 (404)
T 2jif_A 275 GLAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPFIKEASMAKYYASEIAGQTT 354 (404)
T ss_dssp HHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999877777788999999999999999
Q ss_pred HHHHHccCCCCcC
Q psy1215 247 HQAIQIPIITKYL 259 (260)
Q Consensus 247 ~~~~~~~Gg~g~~ 259 (260)
+.++|++||.||+
T Consensus 355 ~~a~q~~Gg~G~~ 367 (404)
T 2jif_A 355 SKCIEWMGGVGYT 367 (404)
T ss_dssp HHHHHHHGGGGGB
T ss_pred HHHHHhcCcceec
Confidence 9999999999986
No 6
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=3e-50 Score=348.83 Aligned_cols=259 Identities=42% Similarity=0.625 Sum_probs=243.1
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.+.|.+.+.|+++++|.++|++|++.||+++.+|++|
T Consensus 11 ~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~eel~~~~~~~~~~~~~~ 90 (379)
T 1ukw_A 11 QLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYGGMGLKMLDEVIVGEELAYACMGIYTIPMAS 90 (379)
T ss_dssp HHHHHHHHHHHHTTGGGHHHHHHHTCCCHHHHHHHHHTTCTTTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 3788999999999999888889999999999999999999999999998
Q ss_pred -------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEEE
Q psy1215 50 -------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFAT 86 (260)
Q Consensus 50 -------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~ 86 (260)
.+++|+|++++|||+|||+|.|+||++.+|+++|+++
T Consensus 91 ~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~ 170 (379)
T 1ukw_A 91 DLGITPVLLAGTEEQKERFLRPLTEKPALAAFALSEPGNGSDAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFAT 170 (379)
T ss_dssp HHHHHHHHHHCCHHHHHHHHGGGTSSSCEEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTEEEEEEEEE
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcChhhCeEEEEEeCCEEEEEEEEecccCCCcCCEEEEEEE
Confidence 2346899999999999999999999999999999999
Q ss_pred eCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHHH
Q psy1215 87 TDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQAL 166 (260)
Q Consensus 87 ~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~~ 166 (260)
++++++.+++++|+||+++|||++.++|+++|+++++++++.||||+||++++||.++.|+......+...|+.+++.++
T Consensus 171 ~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~ 250 (379)
T 1ukw_A 171 VNPELRHKGVVALVVERGTPGFKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLNKTRIPVAAGSV 250 (379)
T ss_dssp SCGGGGGGGEEEEEEETTCTTEEEEECCCCSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCceEEEEEeCCCCCeEecCccccccCCCCCeeEEEEeeEEecHHhcCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 86433445789999999999999999999999999999999999999999999999999998888888999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHH
Q psy1215 167 GIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYNA 246 (260)
Q Consensus 167 G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 246 (260)
|+++++++.+++|+++|.+||+|+.++|.+|++++++..+++++|++++.++..+|.+.+.....+++|.++++.+.+++
T Consensus 251 G~a~~al~~~~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~g~~~~~~~~~aK~~a~~~a~~~~ 330 (379)
T 1ukw_A 251 GVARRALDEARKYAKEREAFGEPIANFQAIQFKLVDMLIGIETARMYTYYAAWLADQGLPHAHASAIAKAYASEIAFEAA 330 (379)
T ss_dssp HHHHHHHHHHHHHHHHCBSSSSBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCeeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998877777889999999999999999
Q ss_pred HHHHHccCCCCcC
Q psy1215 247 HQAIQIPIITKYL 259 (260)
Q Consensus 247 ~~~~~~~Gg~g~~ 259 (260)
+.++|++||.||+
T Consensus 331 ~~a~q~~Gg~g~~ 343 (379)
T 1ukw_A 331 NQAIQIHGGYGYV 343 (379)
T ss_dssp HHHHHHHGGGGGS
T ss_pred HHHHHhhCCeecC
Confidence 9999999999996
No 7
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A*
Probab=100.00 E-value=5.2e-50 Score=349.80 Aligned_cols=258 Identities=35% Similarity=0.513 Sum_probs=244.9
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.+.|.+.+.|+++.+|.++|++|++.||+++.+|++|
T Consensus 32 ~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~ 111 (403)
T 3p4t_A 32 ALRKTVRAFAEREVLPHAHEWERAGEIPRELHRKAAELGLLGAGFPEDAGGSGGDGADPVVICEEMHYAGSPGGVYASLF 111 (403)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHTSCCHHHHHHHHHTTCTTBTSCGGGTCCBCCTHHHHHHHHHHHHTTCCHHHHHHHS
T ss_pred HHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhCCchhhhHHHh
Confidence 3789999999999999999999999999999999999999999999998
Q ss_pred ---------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEE
Q psy1215 50 ---------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVF 84 (260)
Q Consensus 50 ---------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~ 84 (260)
.++.|+|++++|||+|||+|.|+||+..||+++|+
T Consensus 112 ~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~a~~Ad~~~v~ 191 (403)
T 3p4t_A 112 TCGIAVPHMIASGDQRLIDTYVRPTLRGEKIGALAITEPGGGSDVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVTA 191 (403)
T ss_dssp THHHHSHHHHHHTCHHHHHHTHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEE
T ss_pred hhhhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceEEEEEeCCEEEEEEEEEEecCCcccCEEEEE
Confidence 24578999999999999999999999999999999
Q ss_pred EEeCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHH
Q psy1215 85 ATTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQ 164 (260)
Q Consensus 85 a~~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~ 164 (260)
++++++ +.+++++|+||+++|||++.++|+++|+++++++++.||||+||++++||.++.|+......+..+|+.+++.
T Consensus 192 a~~~~~-~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~ 270 (403)
T 3p4t_A 192 ARTGGP-GAGGVSLIVVDKGTPGFEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQIAAAFVAERVGLATQ 270 (403)
T ss_dssp EECSSS-SGGGEEEEEEETTCTTEEEEEECCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCC-CCCceEEEEEeCCCCCeEecCCCCcccCCCCCeeEEEEcceEecHHHcCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 999764 4568999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHHHHH
Q psy1215 165 ALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPF-TKEAAMAKLAASETAT 243 (260)
Q Consensus 165 ~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~-~~~~~~~k~~~~~~~~ 243 (260)
++|+++++++.+++|+++|.+||+++.++|.+|++++++..+++++|+++++++..+|.+.+. ....+++|.++++.+.
T Consensus 271 ~~G~a~~al~~a~~~a~~R~~fg~pi~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~~aK~~a~~~a~ 350 (403)
T 3p4t_A 271 AYAGAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAGMARRIDVARVYTRHVVERQLAGETNLIAEVCFAKNTAVEAGE 350 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988766 7889999999999999
Q ss_pred HHHHHHHHccCCCCcC
Q psy1215 244 YNAHQAIQIPIITKYL 259 (260)
Q Consensus 244 ~~~~~~~~~~Gg~g~~ 259 (260)
++++.++|++||.||+
T Consensus 351 ~v~~~a~q~~Gg~g~~ 366 (403)
T 3p4t_A 351 WVANQAVQLFGGMGYM 366 (403)
T ss_dssp HHHHHHHHHHGGGGGB
T ss_pred HHHHHHHHhhChhhcc
Confidence 9999999999999986
No 8
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus}
Probab=100.00 E-value=1.2e-49 Score=345.62 Aligned_cols=259 Identities=32% Similarity=0.470 Sum_probs=243.3
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.+.|.+.+.|+++.+|.++|++|++.||+++.+|++|
T Consensus 16 ~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~ 95 (385)
T 2pg0_A 16 MFRAAFRKFLEKEAYPHYNDWEKRGIIPRSFWAKMGENGFLCPWVDEKYGGLNADFAYSVVINEELEKVGSSLVGIGLHN 95 (385)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHTSCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHhcCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHHhhCCchHHHHHHh
Confidence 3789999999999999888889999999999999999999999999988
Q ss_pred -------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEEE
Q psy1215 50 -------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFAT 86 (260)
Q Consensus 50 -------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~ 86 (260)
.++.|+|++++|||+|||+|.|+||++.+|+++|+++
T Consensus 96 ~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~ 175 (385)
T 2pg0_A 96 DIVTPYIASYGTEEQKQKWLPKCVTGELITAIAMTEPGAGSDLANISTTAVKDGDYYIVNGQKTFITNGIHADLIVVACK 175 (385)
T ss_dssp HTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCSEEEEEEE
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCCCcCHhhCeEEEEEcCCEEEEEeEEecccCCcccCEEEEEEE
Confidence 2347899999999999999999999999999999999
Q ss_pred eCCC--CCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHH
Q psy1215 87 TDKS--KKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQ 164 (260)
Q Consensus 87 ~~~~--~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~ 164 (260)
++++ ++.+++++|+||+++|||++.++|+++|+++++++++.||||+||++++||.++.|+......+...|+.+++.
T Consensus 176 ~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~ 255 (385)
T 2pg0_A 176 TDPQAKPPHRGISLLVVERDTPGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYLMEKLQQERLVVAIA 255 (385)
T ss_dssp SCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCCEEEEEEEEEEEGGGEESCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred eCCccCCCCCceEEEEEeCCCCCeEecCCccccccCCCceEEEEEcceEEcHHHcCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 8643 23457899999999999999889999999999999999999999999999999999998888889999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Q psy1215 165 ALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATY 244 (260)
Q Consensus 165 ~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 244 (260)
++|+++++++.+++|+++|.+||+|+.++|.+|++++++.++++++|+++++++..+|.+.+.....+++|.++++.+.+
T Consensus 256 ~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~d~g~~~~~~~~~aK~~a~e~a~~ 335 (385)
T 2pg0_A 256 AQTAAEVMFSLTKQYVKQRTAFGKRVSEFQTVQFRLAEMATEIALGRTFVDRVIEEHMAGKQIVTEVSMAKWWITEMAKR 335 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998777778899999999999999
Q ss_pred HHHHHHHccCCCCcC
Q psy1215 245 NAHQAIQIPIITKYL 259 (260)
Q Consensus 245 ~~~~~~~~~Gg~g~~ 259 (260)
+++.++|++||.||+
T Consensus 336 ~~~~a~q~~Gg~g~~ 350 (385)
T 2pg0_A 336 VAAEAMQLHGGYGYM 350 (385)
T ss_dssp HHHHHHHHTGGGGGB
T ss_pred HHHHHHHHhCccccC
Confidence 999999999999986
No 9
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A*
Probab=100.00 E-value=1.2e-49 Score=346.81 Aligned_cols=259 Identities=36% Similarity=0.534 Sum_probs=242.9
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.+.|.+.+.|+++.+|.++|++|++.||+++.+|++|
T Consensus 22 ~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~ 101 (396)
T 1egd_A 22 EFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCGGLGLGTFDACLISEELAYGCTGVQTAIEGN 101 (396)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHCCCCHHHHHHHHHHTCSSTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHHCCCCCCCCchhhCCCCCCHHHHHHHHHHHHhhCccHHHHHHhh
Confidence 3788999999889989888889999999999999999999999999998
Q ss_pred -------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEEE
Q psy1215 50 -------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFAT 86 (260)
Q Consensus 50 -------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~ 86 (260)
.++.|+|++++|||+|||+|.|+||++.||+++|+++
T Consensus 102 ~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~ 181 (396)
T 1egd_A 102 SLGQMPIIIAGNDQQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLAR 181 (396)
T ss_dssp HHHTHHHHHHCCHHHHHHHHHHHHHSCCCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETTTTCSEEEEEEE
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEecCCCCCcchhhCeeEEEEeCCEEEEEEEEEcccCCcccCEEEEEEE
Confidence 2346899999999999999999999999999999999
Q ss_pred eCCCCCC---CceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHH
Q psy1215 87 TDKSKKH---KGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIAS 163 (260)
Q Consensus 87 ~~~~~~~---~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a 163 (260)
++++.+. .++++|+||++.|||++.++|+++|+++++++++.||||+||++++||.++.|+......+...|+.+++
T Consensus 182 ~~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa 261 (396)
T 1egd_A 182 SDPDPKAPANKAFTGFIVEADTPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKERPVVAA 261 (396)
T ss_dssp CCCCTTSCGGGTEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGBSSSTTBHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCCCCCCCeEEEEEeCCCCCeeeCCccccccccCCCeeEEEECcEEECHHHcCCCCCccHHHHHHHHHHHHHHHHH
Confidence 8754332 5789999999999999999999999999999999999999999999999999999888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH
Q psy1215 164 QALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETAT 243 (260)
Q Consensus 164 ~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 243 (260)
.++|+++++++.+++|+++|.+||+|+.++|.+|++|+++.++++++|+++++++..+|.+.+.....+++|.++++.+.
T Consensus 262 ~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~~~aK~~a~~~a~ 341 (396)
T 1egd_A 262 GAVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSGRRNTYYASIAKAFAGDIAN 341 (396)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999877777789999999999999
Q ss_pred HHHHHHHHccCCCCcC
Q psy1215 244 YNAHQAIQIPIITKYL 259 (260)
Q Consensus 244 ~~~~~~~~~~Gg~g~~ 259 (260)
++++.++|++||.||+
T Consensus 342 ~~~~~a~q~~Gg~g~~ 357 (396)
T 1egd_A 342 QLATDAVQILGGNGFN 357 (396)
T ss_dssp HHHHHHHHHHGGGTTB
T ss_pred HHHHHHHHHhCccccc
Confidence 9999999999999986
No 10
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile}
Probab=100.00 E-value=7.2e-50 Score=347.37 Aligned_cols=257 Identities=36% Similarity=0.613 Sum_probs=236.5
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.+.|.+.+.|+++.+|.++|++|++.||+++.+|++|
T Consensus 22 ~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~G~~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~ 101 (387)
T 3nf4_A 22 ELIELTREIADKVLDPIVDRHEKDETYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQVLEEIAARWASVAVAVSVH 101 (387)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHTCCCTTHHHHHHTTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHhhhCCCCHHHHHHHHHCCCCCCCCCHhhCCCCCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 3789999999999999998999999999999999999999999999998
Q ss_pred -------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEEE
Q psy1215 50 -------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFAT 86 (260)
Q Consensus 50 -------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~ 86 (260)
.++.|+|++++|||+|||+|.|+||++.||+++|+++
T Consensus 102 ~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~ 181 (387)
T 3nf4_A 102 SLSSHPLLVFGTEEQKKRWLPGMLSGEQIGAYSLSEPQAGSDAAALRCAATPTDGGYVINGSKSWITHGGKADFYTLFAR 181 (387)
T ss_dssp HHHTHHHHHHSCHHHHHHHHHHHTTSSCCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEE
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEEcCCCCCCChhhCEEEEEEeCCEEEEEeEEecccCCcccCEEEEEEE
Confidence 2356899999999999999999999999999999999
Q ss_pred eCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHHH
Q psy1215 87 TDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQAL 166 (260)
Q Consensus 87 ~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~~ 166 (260)
+++ +.+++++|+||+++|||++.++|+++|+++++++++.||||+||++++||.++.|+......+...|+.+++.++
T Consensus 182 ~~~--~~~g~~~flV~~~~pGv~~~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~~ 259 (387)
T 3nf4_A 182 TGE--GSRGVSCFLVPADQPGLSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGRLGIAAVAT 259 (387)
T ss_dssp CC----CCCEEEEEEETTCTTEEECCCCCBSSCCSSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHTHHHHHHHHHHHHH
T ss_pred eCC--CCCceEEEEEECCCCCeEecCcccccccCCCCeeEEEEeeEEecHHHcCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 872 446799999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHH
Q psy1215 167 GIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYNA 246 (260)
Q Consensus 167 G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~ 246 (260)
|+++++++.+++|+++|.+||+++.++|.+|++++++.++++++|+++++++...|.+.+.....+++|.++++.+.+++
T Consensus 260 G~a~~al~~a~~~a~~R~~fg~~i~~~q~v~~~la~~~~~~~aar~~~~~aa~~~~~~~~~~~~~~~aK~~a~~~a~~~~ 339 (387)
T 3nf4_A 260 GLAQAALDEAVAYANERTAFGRKIIDHQGLGFLLADMAAAVATARATYLDAARRRDQGRPYSQQASIAKLTATDAAMKVT 339 (387)
T ss_dssp HHHHHHHHHHHHHHHC------CTTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCeeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888788889999999999999999
Q ss_pred HHHHHccCCCCcC
Q psy1215 247 HQAIQIPIITKYL 259 (260)
Q Consensus 247 ~~~~~~~Gg~g~~ 259 (260)
+.++|++||.||+
T Consensus 340 ~~a~q~~Gg~G~~ 352 (387)
T 3nf4_A 340 TDAVQVFGGVGYT 352 (387)
T ss_dssp HHHHHHHGGGGGB
T ss_pred HHHHHhhCcHhhc
Confidence 9999999999996
No 11
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=1.8e-49 Score=344.40 Aligned_cols=259 Identities=47% Similarity=0.715 Sum_probs=243.1
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.+.|.+.+.|+++.+|.++|++|++.||+++.+|++|
T Consensus 11 ~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~v~eel~~~~~~~~~~~ 90 (383)
T 1buc_A 11 DFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGSGDDGGDVLSYILAVEELAKYDAGVAITL 90 (383)
T ss_dssp HHHHHHHHHHHHTTTTTHHHHHHHTCCCHHHHHHHHTTSGGGTTSCGGGTCGGGGTCCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCCCCHHHHHHHHHHHHhhChHHHHHH
Confidence 3789999999999999988899999999999999999999999999875
Q ss_pred -----------------------------------------------cccccEEEEe-CCeEEEeeeeeeeeCCCCCcEE
Q psy1215 50 -----------------------------------------------GAASTVAKQD-SNGWTLNGTKAWITNGYESEAT 81 (260)
Q Consensus 50 -----------------------------------------------~~~~~~a~~~-~~g~~l~G~k~~~s~~~~a~~~ 81 (260)
.+++|+|+++ +|||+|||+|.|+||++.+|++
T Consensus 91 ~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~~g~~lnG~K~~~s~~~~Ad~~ 170 (383)
T 1buc_A 91 SATVSLCANPIWQFGTEAQKEKFLVPLVEGTKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIY 170 (383)
T ss_dssp HHHHHHTHHHHHHHCCHHHHHHTHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEECTTSCEEEEEEEEEEETTTTCSEE
T ss_pred HhhhhHHHHHHHHhCCHHHHHHHHHHHhCCCeeEEEEeCCCCCCCChhhCEeEEEEcCCCEEEEEEEEeccCCCCcCCEE
Confidence 2347889999 9999999999999999999999
Q ss_pred EEEEEeCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHH
Q psy1215 82 VVFATTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGI 161 (260)
Q Consensus 82 ~v~a~~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~ 161 (260)
+|+++++++++.+++++|+||+++|||++.++|+++|+++++++++.|+||+||++++||.++.|+......+...|+.+
T Consensus 171 ~v~a~~~~~~~~~g~~~flV~~~~~Gv~v~~~~~~~g~~~~~~~~v~f~~v~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~ 250 (383)
T 1buc_A 171 IVFAMTDKSKGNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGV 250 (383)
T ss_dssp EEEEESCSSSSTTSEEEEEEETTCTTEEEEEECCCSSCTTSCEEEEEEEEEEECGGGEESCTTBHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCCceEEEEEECCCCCeEecCccccccccCCceeEEEEccEEeCHHHcCCCCCchHHHHHHHHHHHHHHH
Confidence 99999875444567999999999999999889999999999999999999999999999999999998888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH
Q psy1215 162 ASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASET 241 (260)
Q Consensus 162 ~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 241 (260)
++.++|+++++++.+++|+++|.+||+|+.++|.+|++|+++..+++++|++++++++.+|.+.+.....+++|.++++.
T Consensus 251 aa~~~G~a~~al~~~~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~~ar~~~~~aa~~~~~g~~~~~~~~~aK~~a~~~ 330 (383)
T 1buc_A 251 AAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVYKAACKKQEGKPFTVDAAIAKRVASDV 330 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCeeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988777778899999999999
Q ss_pred HHHHHHHHHHccCCCCcC
Q psy1215 242 ATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 242 ~~~~~~~~~~~~Gg~g~~ 259 (260)
+.++++.++|++||.||+
T Consensus 331 a~~~~~~a~q~~Gg~g~~ 348 (383)
T 1buc_A 331 AMRVTTEAVQIFGGYGYS 348 (383)
T ss_dssp HHHHHHHHHHHHGGGGGS
T ss_pred HHHHHHHHHHhcCCeecC
Confidence 999999999999999996
No 12
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=2.2e-49 Score=342.62 Aligned_cols=254 Identities=41% Similarity=0.638 Sum_probs=240.7
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.+.|.+.+.|+.+.+|.++|++|++.||+++.+|++|
T Consensus 9 ~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~ 88 (372)
T 2dvl_A 9 LVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGVGLDSVTWALALEELAAADPSVAVIVSVT 88 (372)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHTTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhcCcHHHHHHHHh
Confidence 3789999999888988888889999999999999999999999999998
Q ss_pred --------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEE
Q psy1215 50 --------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFA 85 (260)
Q Consensus 50 --------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a 85 (260)
.+++|+|++++|||+|||+|.|+||+..+|+++|++
T Consensus 89 ~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a 168 (372)
T 2dvl_A 89 SGLPQYMLLRFGSEAQKRRYLVPLARGEWIGAFCLTEPQAGSDAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMA 168 (372)
T ss_dssp TSHHHHHHHHHCCHHHHHHTHHHHHTTSSCEEEECCCSSCSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEE
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCChhhCeeEEEEECCEEEEEeEEEeecCCCcCCEEEEEE
Confidence 235689999999999999999999999999999999
Q ss_pred EeCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHH
Q psy1215 86 TTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQA 165 (260)
Q Consensus 86 ~~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~ 165 (260)
++++ ++++|+||++.|||++.+.|+++|+++++++++.||||+||++++||.++.|+......+...|+.+++.+
T Consensus 169 ~~~~-----g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~aa~~ 243 (372)
T 2dvl_A 169 RTEK-----GISAFLVEKGTPGLSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSGRVGVAAQA 243 (372)
T ss_dssp EETT-----EEEEEEEETTCTTEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCC-----CcEEEEEeCCCCCeEecCcccccccCcCCeeEEEECcEEeCHHHcCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 9853 68999999999999999999999999999999999999999999999999999888888999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHH
Q psy1215 166 LGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYN 245 (260)
Q Consensus 166 ~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 245 (260)
+|+++++++.+++|+++|.+||+|+.++|.+|++++++..+++++|++++.++..++.+.+.....+++|.++++.+.++
T Consensus 244 ~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~~~aK~~a~~~a~~~ 323 (372)
T 2dvl_A 244 VGIARGAFEIAKAYAEEREQFGKKLKEHQAIAFKIADMHVKIAAARALVLEAARKKDRGERFTLEASAAKLFASAAAVEV 323 (372)
T ss_dssp HHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988777788999999999999999
Q ss_pred HHHHHHccCCCCcC
Q psy1215 246 AHQAIQIPIITKYL 259 (260)
Q Consensus 246 ~~~~~~~~Gg~g~~ 259 (260)
++.++|++||.||+
T Consensus 324 ~~~a~q~~Gg~g~~ 337 (372)
T 2dvl_A 324 TREAVQVLGGYGYH 337 (372)
T ss_dssp HHHHHHHTGGGGGS
T ss_pred HHHHHHhhcCeecC
Confidence 99999999999986
No 13
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=1.7e-49 Score=345.61 Aligned_cols=259 Identities=38% Similarity=0.569 Sum_probs=242.9
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCH--HHHHHHHHcCCccccCcccc-----------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPK--EQIKKMGELGLMGVEVPEDL----------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~G~~~~~vp~~~----------------------------- 49 (260)
++++.+++|+++.+.|.+.+.|+++.+|. ++|++|++.||+++.+|++|
T Consensus 19 ~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eel~~~~~~~~~~~~ 98 (394)
T 1ivh_A 19 QLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYG 98 (394)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHTCCTTHHHHHHHHHHHTCTTTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChhHHHHHhcCCCCchHHHHHHHHHCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhhchhHHHHHH
Confidence 37899999999999998888899999998 99999999999999999998
Q ss_pred ----------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEE
Q psy1215 50 ----------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVV 83 (260)
Q Consensus 50 ----------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v 83 (260)
..+.|+|++++|||+|||+|.|+||+..||+++|
T Consensus 99 ~~~~~~~~~l~~~g~~~q~~~~l~~l~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~vs~~~~Ad~~~v 178 (394)
T 1ivh_A 99 AHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIV 178 (394)
T ss_dssp HHHTTTHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECSSEEEEEEEEEEEETGGGCSEEEE
T ss_pred HhhHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCcCcccceEEEEEcCCEEEEEeEEEeeCCCCcCCEEEE
Confidence 2356899999999999999999999999999999
Q ss_pred EEEeCCC--CCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHH
Q psy1215 84 FATTDKS--KKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGI 161 (260)
Q Consensus 84 ~a~~~~~--~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~ 161 (260)
+++++++ ++.+++++|+||+++|||++.+.|+++|+++++++++.||||+||++++||.++.|+......+...|+.+
T Consensus 179 ~ar~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~g~~~~~~~l~~~r~~~ 258 (394)
T 1ivh_A 179 YAKTDLAAVPASRGITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLDLERLVL 258 (394)
T ss_dssp EEESCTTCSSGGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEeCCcccCCCCCeEEEEEeCCCCCeEeccccccccCCCCCeeEEEECcEEEcHHHcCCCCCchHHHHHHHHHHHHHHH
Confidence 9998743 23457899999999999999999999999999999999999999999999999999998888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH
Q psy1215 162 ASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASET 241 (260)
Q Consensus 162 ~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 241 (260)
++.++|+++++++.+++|+++|.+||+++.++|.+|++++++..+++++|++++.++..++.+.+.....+++|.++++.
T Consensus 259 aa~~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~g~~~~~~~~~aK~~a~~~ 338 (394)
T 1ivh_A 259 AGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDEGHCTAKDCAGVILYSAEC 338 (394)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCeeCCcchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998777778899999999999
Q ss_pred HHHHHHHHHHccCCCCcC
Q psy1215 242 ATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 242 ~~~~~~~~~~~~Gg~g~~ 259 (260)
+.++++.++|++||.||.
T Consensus 339 a~~~~~~a~q~~Gg~g~~ 356 (394)
T 1ivh_A 339 ATQVALDGIQCFGGNGYI 356 (394)
T ss_dssp HHHHHHHHHHHHGGGGGB
T ss_pred HHHHHHHHHHhcCCcccc
Confidence 999999999999999986
No 14
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Probab=100.00 E-value=1.4e-49 Score=346.35 Aligned_cols=257 Identities=29% Similarity=0.435 Sum_probs=241.5
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.+.|.+.+.++++.+|.++|+.|++.||+++.+|++|
T Consensus 25 ~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~ 104 (396)
T 3ii9_A 25 MVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYGGPGLDYVSYGLIAREVERVDSGYRSMMSVQ 104 (396)
T ss_dssp HHHHHHHHHCCCCCHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTSCGGGTSCCCCHHHHHHHHHHHHTTCHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCChhHHHHHhhCCCCHHHHHHHHhCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHhChhHHHHHHhh
Confidence 3789999999999999988999999999999999999999999999998
Q ss_pred --------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEE
Q psy1215 50 --------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFA 85 (260)
Q Consensus 50 --------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a 85 (260)
.++.|+|++++|||+|||+|.|+||++.||+++|++
T Consensus 105 ~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~a~~Ad~~~v~a 184 (396)
T 3ii9_A 105 SSLVMVPIFEFGSDAQKEKYLPKLATGEWIGCFGLTEPNHGSDPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWA 184 (396)
T ss_dssp CCCCCHHHHHHSCHHHHHHHHHHHHHTSSCEEEECCCCC------CCCCEEEEETTEEEEEEEEEEEETGGGCSEEEEEE
T ss_pred hhhHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCChhhCeeEEEEeCCEEEEEEEEEeECCCccCCEEEEEE
Confidence 235689999999999999999999999999999999
Q ss_pred EeCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHH
Q psy1215 86 TTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQA 165 (260)
Q Consensus 86 ~~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~ 165 (260)
++++ ++.+++++|+||+++|||++.+.|+.+|+++++++++.||||+||++++|+. +.|+......+...|+.+++.+
T Consensus 185 ~~~~-~g~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~Vp~~~~l~~-~~g~~~~~~~l~~~r~~~aa~~ 262 (396)
T 3ii9_A 185 KLDE-DGRDEIRGFILEKGCKGLSAPAIHGKVGLRASITGEIVLDEAFVPEENILPH-VKGLRGPFTCLNSARYGIAWGA 262 (396)
T ss_dssp EEEE-TTEEEEEEEEEETTCTTEECCBCCCCSSCTTSCEEEEEEEEEEEEGGGBCTT-CCSTHHHHHHHHHHHHHHHHHH
T ss_pred EecC-CCCCceEEEEEecCCCCeEeccccccccCCcCCeeEEEEccEEECHHHccCC-ChHHHHHHHHHHHHHHHHHHHH
Confidence 9963 2334689999999999999999999999999999999999999999999976 7899888888999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHH
Q psy1215 166 LGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYN 245 (260)
Q Consensus 166 ~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 245 (260)
+|+++++++.+++|+++|.+||+++.++|.+|++|+++.++++++|+++++++..+|.+.+.....+++|.++++.+.++
T Consensus 263 ~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~aK~~a~~~a~~~ 342 (396)
T 3ii9_A 263 LGAAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEITLGLQGVLRLGRMKDEGTAAVEITSIMKRNSCGKALDI 342 (396)
T ss_dssp HHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCeeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988777888999999999999999
Q ss_pred HHHHHHccCCCCcC
Q psy1215 246 AHQAIQIPIITKYL 259 (260)
Q Consensus 246 ~~~~~~~~Gg~g~~ 259 (260)
++.++|++||.||+
T Consensus 343 ~~~a~q~~Gg~g~~ 356 (396)
T 3ii9_A 343 ARLARDMLGGNGIS 356 (396)
T ss_dssp HHHHHHHHCSCSCS
T ss_pred HHHHHHhhCccccc
Confidence 99999999999996
No 15
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=9.5e-49 Score=340.79 Aligned_cols=258 Identities=38% Similarity=0.545 Sum_probs=241.0
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.+.|.+.+.|+++.+|.++|++|++.||+++.+|++|
T Consensus 25 ~~~~~~r~~~~~~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~ 104 (393)
T 1rx0_A 25 EFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEALATGCTSTTAYISIH 104 (393)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHTCCCHHHHHHHHHTTCSSTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHhhcCCCCHHHHHHHHhCCCCcCCCChhhCCCCCCHHHHHHHHHHHHHhCcchhHHHHHh
Confidence 3789999999999989888889999999999999999999999999998
Q ss_pred -------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEEE
Q psy1215 50 -------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFAT 86 (260)
Q Consensus 50 -------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~ 86 (260)
.++.|+|++++|||+|||+|.|+||+..+|+++|+++
T Consensus 105 ~~~~~~l~~~g~~~qk~~~l~~~~~G~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~ 184 (393)
T 1rx0_A 105 NMCAWMIDSFGNEEQRHKFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCR 184 (393)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSSGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEEE
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHhCCCceEEEEecCCCCCcCcccceeEEEEcCCEEEEEeEEEeecCCccCCEEEEEEE
Confidence 2357899999999999999999999999999999999
Q ss_pred eCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHHH
Q psy1215 87 TDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQAL 166 (260)
Q Consensus 87 ~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~~ 166 (260)
+++ ++.+++++|+||+++|||++.+.|+.+|+++++++++.||||+||++++||.++.|+......+...|+.+++.++
T Consensus 185 ~~~-~~~~g~~~flV~~~~pGv~v~~~~~~~g~~~~~~~~v~fd~v~Vp~~~~lg~~g~g~~~~~~~l~~~r~~~aa~~~ 263 (393)
T 1rx0_A 185 TGG-PGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNGGRINIASCSL 263 (393)
T ss_dssp SSS-SSGGGEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCC-CCCCceEEEEEeCCCCCeEecCcccccccCCCCceEEEEcCeEeCHHHcCCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 864 2345799999999999999999999999999999999999999999999999999998888888899999999999
Q ss_pred HHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHHHHHHH
Q psy1215 167 GIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQ-PFTKEAAMAKLAASETATYN 245 (260)
Q Consensus 167 G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~-~~~~~~~~~k~~~~~~~~~~ 245 (260)
|+++++++.+++|+++|.+||+|+.++|.+|++++++.++++++|+++++++..+|.+. +.....+++|.++++.+.++
T Consensus 264 G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~~aK~~a~~~a~~v 343 (393)
T 1rx0_A 264 GAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAARLMVRNAAVALQEERKDAVALCSMAKLFATDECFAI 343 (393)
T ss_dssp HHHHHHHHHHHHHHHHCEETTEEGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998764 34678899999999999999
Q ss_pred HHHHHHccCCCCcC
Q psy1215 246 AHQAIQIPIITKYL 259 (260)
Q Consensus 246 ~~~~~~~~Gg~g~~ 259 (260)
++.++|++||.||+
T Consensus 344 ~~~a~q~~Gg~g~~ 357 (393)
T 1rx0_A 344 CNQALQMHGGYGYL 357 (393)
T ss_dssp HHHHHHHTGGGGGB
T ss_pred HHHHHHhcCCeeec
Confidence 99999999999986
No 16
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Probab=100.00 E-value=4.9e-49 Score=343.20 Aligned_cols=258 Identities=38% Similarity=0.636 Sum_probs=243.7
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCC-HHHHHHHHHcCCccccCcccc------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYP-KEQIKKMGELGLMGVEVPEDL------------------------------ 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~G~~~~~vp~~~------------------------------ 49 (260)
++++.+++|+++.+.|.+.+.|+++.+| .++|++|++.||+++.+|++|
T Consensus 11 ~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~g~~~~~~~~~~v~eela~~~~~~~~~~ 90 (397)
T 3mpi_A 11 MLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGEGMDQGWLAAMIVTEEIARGSSALRVQL 90 (397)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHTCCCTTTTHHHHHHTTTTCTTSCGGGTSCCCTTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHhCChhHHHHHhcCCCCHHHHHHHHHHCCCCccCCChhhCCCCCCCCHHHHHHHHHHHHhhCchHHHHH
Confidence 4789999999999999999999999999 999999999999999999987
Q ss_pred -----------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEE
Q psy1215 50 -----------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATV 82 (260)
Q Consensus 50 -----------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~ 82 (260)
.++.|+|++++|||+|||+|.|+||+..||+++
T Consensus 91 ~~~~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~ 170 (397)
T 3mpi_A 91 NMEVLGCAYTILTYGSEALKKKYVPKLSSAEFLGGFGITEPDAGSDVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLI 170 (397)
T ss_dssp HHHTTTTHHHHHHHSCHHHHHHHHHHHHTTSSCCCEECCBTTBSSCGGGCCCEEEECSSEEEEEEEEEEEETTTTCSSEE
T ss_pred HHHHHhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeEEEEEeCCEEEEEEEEEeeCCCcccCEEE
Confidence 235689999999999999999999999999999
Q ss_pred EEEEeCCCCCCCceEEEEE-eCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHH
Q psy1215 83 VFATTDKSKKHKGISAFIV-DKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGI 161 (260)
Q Consensus 83 v~a~~~~~~~~~~~~~~~v-~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~ 161 (260)
|+++++++++..++++|+| |+++|||++ ++|+++|+++++++++.||||+||++++||.++.|+......+...|+.+
T Consensus 171 v~a~~~~~~~~~g~~~flV~~~~~~Gv~v-~~~~~~G~~~~~~~~v~fddv~Vp~~~~lg~~~~g~~~~~~~~~~~r~~~ 249 (397)
T 3mpi_A 171 YYAYTDKAAGSRGLSAFVIEPRNFPGIKT-SNLEKLGSHASPTGELFLDNVKVPKENILGKPGDGARIVFGSLNHTRLSA 249 (397)
T ss_dssp EEEESCGGGGGGSEEEEEECTTTSTTEEE-EECCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCCCceEEEEEEcCCCCCeEe-ccCccccCcCCceeEEEEeeEEECHHHcCCCCCchHHHHHHHHHHHHHHH
Confidence 9999875444567899999 999999999 99999999999999999999999999999999999999888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHH
Q psy1215 162 ASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNK-QPFTKEAAMAKLAASE 240 (260)
Q Consensus 162 ~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~-~~~~~~~~~~k~~~~~ 240 (260)
+++++|+++++++.+++|+++|.+||+++.++|.+|++++++.++++++|+++++++..++.+ .+.....+++|.++++
T Consensus 250 aa~~lG~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~~~~~~~~~~~aK~~a~~ 329 (397)
T 3mpi_A 250 AAGGVGLAQACLDAAIKYCNERRQFGKPIGDFQMNQDMIAQMAVEVEAARLLAYKAAAAKDEGRLNNGLDVAMAKYAAGE 329 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987 6667889999999999
Q ss_pred HHHHHHHHHHHccCCCCcC
Q psy1215 241 TATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 241 ~~~~~~~~~~~~~Gg~g~~ 259 (260)
.+.++++.++|++||.||+
T Consensus 330 ~a~~~~~~a~q~~Gg~g~~ 348 (397)
T 3mpi_A 330 AVSKCANYAMRILGAYGYS 348 (397)
T ss_dssp HHHHHHHHHHHHHGGGGGS
T ss_pred HHHHHHHHHHHHhCCeeec
Confidence 9999999999999999986
No 17
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis}
Probab=100.00 E-value=2.7e-48 Score=339.00 Aligned_cols=252 Identities=31% Similarity=0.469 Sum_probs=240.0
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCC-HHHHHHHHHcCCccccCcccc------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYP-KEQIKKMGELGLMGVEVPEDL------------------------------ 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~G~~~~~vp~~~------------------------------ 49 (260)
++++.+++|+++.+.|.+.+.|+++.+| .++|++|++.||+++.+ ++|
T Consensus 36 ~l~~~~r~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~Gl~~l~~-~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~ 114 (403)
T 3sf6_A 36 EIRDTVRSVVQRRIKPHIASWYEDGELPARELAVELGELGLLGMHL-KGYGCAGMSAVAYGLACLELEAGDSGIRSLVSV 114 (403)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTCSSTTS-CSTTCCCCCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcChhHHHHHhcCCCCHHHHHHHHHHCCCCcccc-hhhCCCCCCHHHHHHHHHHHHHhcccHHHHHHH
Confidence 3789999999999999998999999999 99999999999999999 988
Q ss_pred ---------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEE
Q psy1215 50 ---------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVF 84 (260)
Q Consensus 50 ---------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~ 84 (260)
.++.|+|++++|||+|||+|.|+||++.+|+++|+
T Consensus 115 ~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~ 194 (403)
T 3sf6_A 115 QGSLAMYAIHAFGSDEQKDQWLPDMASGHRIGCFGLTEPDHGSDPAGMRTRATRSGDDWILTGTKMWITNGSVADVAVVW 194 (403)
T ss_dssp HHHTHHHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETGGGCSEEEEE
T ss_pred hhhhHHHHHHHhCCHHHHHHHHHHHhCCCceEEEEEccCCCCCCchhcEEEEEEECCEEEEEEEEEeecCCcccCEEEEE
Confidence 34578999999999999999999999999999999
Q ss_pred EEeCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHH
Q psy1215 85 ATTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQ 164 (260)
Q Consensus 85 a~~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~ 164 (260)
+++++ ++++|+||+++|||++.+.|+.+|+++++++++.|+||+||++++||. +.|+......+...|+.+++.
T Consensus 195 ar~~~-----g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~-~~g~~~~~~~l~~~r~~~aa~ 268 (403)
T 3sf6_A 195 ARTDE-----GIRGFVVPTDTPGFTANTIKSKMSLRASVTSELVLDGVRLPDSARLPG-ATSLGAPLRCLNEARFGIVFG 268 (403)
T ss_dssp EEETT-----EEEEEEEETTSTTEEEEECCSCSSCTTSCEEEEEEEEEEEEGGGBCTT-CCSTHHHHHHHHHHHHHHHHH
T ss_pred EEeCC-----ceEEEEEECCCCCeEecCCCCccCCCCCceeEEEEccEEEcHHHccCC-ChhHHHHHHHHHHHHHHHHHH
Confidence 99863 589999999999999999999999999999999999999999999998 889988889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Q psy1215 165 ALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATY 244 (260)
Q Consensus 165 ~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 244 (260)
++|+++++++.+++|+++|.+||+|+.++|.+|++|+++..+++++|+++++++..+|.+.+.....+++|.++++.+.+
T Consensus 269 ~~G~a~~al~~a~~ya~~R~~fg~pi~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~aK~~a~~~a~~ 348 (403)
T 3sf6_A 269 ALGAARDCLETALAYACSREQFDRPIGGFQLTQQKLADMTLEYGKGFLLALHLGRQKDAGELAPEQVSLGKLNNVREAIE 348 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877788899999999999999
Q ss_pred HHHHHHHccCCCCcC
Q psy1215 245 NAHQAIQIPIITKYL 259 (260)
Q Consensus 245 ~~~~~~~~~Gg~g~~ 259 (260)
+++.++|++||.||+
T Consensus 349 v~~~a~q~~Gg~g~~ 363 (403)
T 3sf6_A 349 IARTARTVLGASGIT 363 (403)
T ss_dssp HHHHHHHHHGGGGGS
T ss_pred HHHHHHHhcCCeEcc
Confidence 999999999999986
No 18
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis}
Probab=100.00 E-value=2.1e-48 Score=339.36 Aligned_cols=252 Identities=30% Similarity=0.485 Sum_probs=239.7
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.+.|.+.+.|+++.+|.++|++|++.||+++.+ ++|
T Consensus 32 ~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~-~e~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~ 110 (399)
T 3swo_A 32 DIAATVRQFVDTRLKPNVEGWFESATLPSELAKEFGNLGVLGMHL-QGYGCAGTNAVSYGLACMELEAGDSGFRSFVSVQ 110 (399)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHTCCCTTHHHHHHHHTCTTTTS-CSTTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChhHHHHHhhCCCCHHHHHHHHHCCCCcCCh-hhhCCCCCCHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 378999999998899998889999999999999999999999999 988
Q ss_pred --------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEE
Q psy1215 50 --------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFA 85 (260)
Q Consensus 50 --------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a 85 (260)
.++.|+|++++|||+|||+|.|+||++.+|+++|++
T Consensus 111 ~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~vs~a~~Ad~~~v~a 190 (399)
T 3swo_A 111 GSLSMFSIYRYGSEEQKNEWLPRLAAGDAIGCFGLTEPDFGSNPAGMRTRARRDGSDWILNGTKMWITNGNLADVATVWA 190 (399)
T ss_dssp TTTHHHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEE
T ss_pred hhhhhhHHHhcCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCCccceEEEEEeCCEEEEEEEEEeECCCCccCEEEEEE
Confidence 245689999999999999999999999999999999
Q ss_pred EeCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHH
Q psy1215 86 TTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQA 165 (260)
Q Consensus 86 ~~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~ 165 (260)
++++ ++++|+||+++|||++.+.|+.+|+++++++++.|+||+||++++||. +.|+......+...|+.+++.+
T Consensus 191 ~~~~-----g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lg~-~~g~~~~~~~l~~~r~~~aa~~ 264 (399)
T 3swo_A 191 QTDD-----GIRGFLVPTDTPGFTANEIHRKLSLRASVTSELVLDNVRLPASAQLPL-AEGLSAPLSCLNEARFGIVFGA 264 (399)
T ss_dssp BCTT-----SCEEEEEETTSTTEEEEECCCBSSCCSSCEEEEEEEEEEECGGGBCTT-CCSTHHHHHHHHHHHHHHHHHH
T ss_pred EeCC-----ceEEEEEeCCCCCeEeecCcCcccCCCCceeEEEEccEEEcHHHcCCC-ChhHHHHHHHHHHHHHHHHHHH
Confidence 9852 589999999999999999999999999999999999999999999998 8899988889999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHH
Q psy1215 166 LGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYN 245 (260)
Q Consensus 166 ~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 245 (260)
+|+++++++.+++|+++|.+||+|+.++|.+|++|+++..+++++|+++++++..+|.+.+.....+++|.++++.+.++
T Consensus 265 ~G~a~~al~~a~~~a~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~aK~~a~~~a~~v 344 (399)
T 3swo_A 265 LGAARDSLETTIAYTQSREVFDKPLSNYQLTQEKLANMTVELGKGMLLAIHLGRIKDAEGVRPEQISLGKLNNVREAIAI 344 (399)
T ss_dssp HHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCeeCCcchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998878889999999999999999
Q ss_pred HHHHHHccCCCCcC
Q psy1215 246 AHQAIQIPIITKYL 259 (260)
Q Consensus 246 ~~~~~~~~Gg~g~~ 259 (260)
++.++|++||.||+
T Consensus 345 ~~~a~q~~Gg~g~~ 358 (399)
T 3swo_A 345 ARECRTLLGGSGIT 358 (399)
T ss_dssp HHHHHHHHGGGGGB
T ss_pred HHHHHHhhCccccc
Confidence 99999999999986
No 19
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus}
Probab=100.00 E-value=7.7e-49 Score=343.77 Aligned_cols=259 Identities=25% Similarity=0.371 Sum_probs=237.7
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcC------------------CCCHHHHHHHHHcCCccccCcccc-------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREH------------------LYPKEQIKKMGELGLMGVEVPEDL------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~l~~~G~~~~~vp~~~------------- 49 (260)
++++.+++|+++.+.|.+.+.++.+ .+|++++++|++.||+++.+|++|
T Consensus 15 ~l~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~G~~~~~~P~~~GG~g~~~~~~~~v 94 (415)
T 4hr3_A 15 ELIAAVREFIDAEVMPVERAVLAHHDELLGARAGTTAELWHVPPELDSLKAKARAAGLWNLFLPDPELGGGLSNSEYAPL 94 (415)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCSCSGGGGSCCTHHHHHHHHHHHTTCSSTTCCCTTTSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHhhhccccccccccccccccCcchhHHHHHHHHHhCCCcCcCCCHHHCCCCCCHHHHHHH
Confidence 3789999999999888877665543 267999999999999999999998
Q ss_pred ----------------------------------------------------------------cccccEEEEeCCeEEE
Q psy1215 50 ----------------------------------------------------------------GAASTVAKQDSNGWTL 65 (260)
Q Consensus 50 ----------------------------------------------------------------~~~~~~a~~~~~g~~l 65 (260)
.+++|+|++++|||+|
T Consensus 95 ~eel~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~G~~~~~~a~tEp~~~gsd~~~~~t~A~~~g~g~~l 174 (415)
T 4hr3_A 95 AEQMGRSLFAPTVFNCNAPDSGNMEVLHRYGSQEQKEVWLEPLLEGDIRSAFCMTEPDVASSDATNMAATAVVEGDEVVI 174 (415)
T ss_dssp HHHHTTCSSHHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHTTSCEEEEECCCTTSCTTSGGGCCCEEEEETTEEEE
T ss_pred HHHHhcccchHHHHHHhccccchHHHHHHhCCHHHHHHHHHHHhCCCceeEEEEcCCCCCCCchhhCeeEEEEECCEEEE
Confidence 1245899999999999
Q ss_pred eeeeeeeeCCCC--CcEEEEEEEeCCC-CCCCceEEEEEeCCCCCeeecccCCcccCCCCC--eeeEEEeceeeCCCCcc
Q psy1215 66 NGTKAWITNGYE--SEATVVFATTDKS-KKHKGISAFIVDKPTKGLSLGKKEDKLGINASS--TCSLIFEDCSIPAENLL 140 (260)
Q Consensus 66 ~G~k~~~s~~~~--a~~~~v~a~~~~~-~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~--~~~~~f~~v~Vp~~~vl 140 (260)
||+|.|+||+.+ ||+++|+++++++ ++.+++++|+||+++|||++.++|+++|+++++ ++++.|+||+||++++|
T Consensus 175 nG~K~~is~a~~~~Ad~~~v~a~~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~g~r~~~~~~~~v~fddv~Vp~~~~l 254 (415)
T 4hr3_A 175 NGRKWWSTGVGHPDCKVIIFMGLTDPNAHRYARHSMVLVPMDTPGITVERMLPTMGFYDEPGGHGVVSFDNVRLPADAFI 254 (415)
T ss_dssp EEEEEEEETTTSTTEEEEEEEEECCTTSCTTSSEEEEEEETTSTTEEEEEECCBTTBCCTTTCEEEEEEEEEEEEGGGBS
T ss_pred eeEEeeECCCCCCCCCEEEEEEEeCCCCCCCCceEEEEEEcCCCceEecCCCCccccCCCCCCeeEEEEccEEECHHHcC
Confidence 999999999966 9999999999754 345689999999999999998999999999987 99999999999999999
Q ss_pred CCCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1215 141 GEPGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYL 220 (260)
Q Consensus 141 ~~~~~g~~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~ 220 (260)
|.++.|+......+...|+.+++.++|+++++++.+++|+++|.+||+++.++|.+|++|+++..+++++|++++++++.
T Consensus 255 g~~~~g~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~~a~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~ 334 (415)
T 4hr3_A 255 AGPGKGFEIAQGRLGPGRVHHAMRLIGLAEVALEHACRRGLDRTAFGKPLVNLGGNRERIADARIAINQTRLLVLHAAWL 334 (415)
T ss_dssp SCTTCHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhC--CCCchhHHHHHHHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 221 KDN--KQPFTKEAAMAKLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 221 ~~~--~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
+|. +.+.....+++|.++++.+.++++.++|++||.||+
T Consensus 335 ~d~~~~~~~~~~~~~aK~~a~e~a~~v~~~a~qi~Gg~g~~ 375 (415)
T 4hr3_A 335 LDTVGIMGALSAVSEIKVAAPNMAQQVIDMAIQIHGGGGLS 375 (415)
T ss_dssp HHHTCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGS
T ss_pred HHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC
Confidence 887 446677889999999999999999999999999996
No 20
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=1.3e-48 Score=337.05 Aligned_cols=252 Identities=23% Similarity=0.287 Sum_probs=230.6
Q ss_pred HHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc----------------------------------
Q psy1215 4 KTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL---------------------------------- 49 (260)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~---------------------------------- 49 (260)
+.+++|+++.+.|.+.+.|+++.+|.++|++|++.||+++.+|++|
T Consensus 2 ~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eel~~~~~~~~~~~~~~~~~ 81 (366)
T 1r2j_A 2 PERDALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFTAHVGSLCSSLRSVMTSQGMA 81 (366)
T ss_dssp -CCHHHHHHHHSSCHHHHHHHTCCCHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhccccHHHHhhcCCCCHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 5678999999999888889999999999999999999999999998
Q ss_pred ---------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEEEeCCC
Q psy1215 50 ---------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKS 90 (260)
Q Consensus 50 ---------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~~~~~ 90 (260)
.++.|+|++++|||+|||+|.|+||++.+|+++|++++++
T Consensus 82 ~~~~l~~g~~~q~~~~l~~~~~G~~~~~a~tEp~~Gsd~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~a~~~~- 160 (366)
T 1r2j_A 82 AWTVQRLGDAGQRATFLKELTSGKLAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQED- 160 (366)
T ss_dssp HHHHHHHSCHHHHHHHHHHTTCC-CEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEETTTTTCSEEEEEEBCSS-
T ss_pred HHHHHHhCCHHHHHHHHHHHhCCCeeEEEeCCCCCCCchhhCEeEEEEeCCEEEEEEEEecccCCcccCEEEEEEEeCC-
Confidence 1246789999999999999999999999999999998854
Q ss_pred CCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHH-HHHHhhHhHHHHHHHHHHH
Q psy1215 91 KKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIA-MMTLDAGRIGIASQALGIA 169 (260)
Q Consensus 91 ~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~-~~~~~~~r~~~~a~~~G~~ 169 (260)
+++++|+||+++|||++.+.|+++|+++++++++.|+||+||++++||.++.|+... ...+..+|+.+++.++|++
T Consensus 161 ---~g~~~flV~~~~~Gv~~~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~~~~~~~~l~~~r~~~aa~~~G~a 237 (366)
T 1r2j_A 161 ---GSGAVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVAASLAYGRKSVAWGCVGIL 237 (366)
T ss_dssp ---SCCEEEEEETTSTTEEEEECSSCSSSTTSCCEEEEEEEEEEEGGGBCTTTTSCTTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred ---CceEEEEEECCCCCeEecCCcCCccCCCCCeeEEEEeeEEEcHHHcCCCCCccHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 278999999999999999999999999999999999999999999999988898877 7788999999999999999
Q ss_pred HHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHHHHHHHHHH
Q psy1215 170 QASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNK-QPFTKEAAMAKLAASETATYNAHQ 248 (260)
Q Consensus 170 ~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~-~~~~~~~~~~k~~~~~~~~~~~~~ 248 (260)
+++++.+++|+++|.+||+|+.++|.+|++++++..+++++|+++++++..+|.+ .+.....+++|.++++.+.++++.
T Consensus 238 ~~al~~a~~ya~~R~~fg~~i~~~q~v~~~la~~~~~~~~ar~~~~~aa~~~~~g~~~~~~~~~~aK~~a~~~a~~~~~~ 317 (366)
T 1r2j_A 238 RACRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTAEQIAARVCEYASDHWDEGSPEMVPATILAKHVAAERAAAGAAT 317 (366)
T ss_dssp HHHHHHHHHHHTTCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998876 566778999999999999999999
Q ss_pred HHHccCCCCcC
Q psy1215 249 AIQIPIITKYL 259 (260)
Q Consensus 249 ~~~~~Gg~g~~ 259 (260)
++|++||.||+
T Consensus 318 a~q~~Gg~g~~ 328 (366)
T 1r2j_A 318 AAQVLASAGAR 328 (366)
T ss_dssp HHHHHGGGGC-
T ss_pred HHHhhCCeeec
Confidence 99999999986
No 21
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus}
Probab=100.00 E-value=7.5e-48 Score=334.39 Aligned_cols=254 Identities=31% Similarity=0.468 Sum_probs=234.8
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.+.|.+.+.|+++.+|.++|++|++.||+++.+|++|
T Consensus 17 ~l~~~~r~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~ 96 (385)
T 2eba_A 17 EVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLPPEYGGAGVSSAAYGLICYELERVDSGLRSFVSVQ 96 (385)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHTTCCCGGGHHHHHHHTCSSTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHhCCCCHHHHHHHHHCCCcCCCCchhhCCCCCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 3789999999989999888889989999999999999999999999998
Q ss_pred -----------------------------------------cc----cccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEE
Q psy1215 50 -----------------------------------------GA----ASTVAKQDSNGWTLNGTKAWITNGYESEATVVF 84 (260)
Q Consensus 50 -----------------------------------------~~----~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~ 84 (260)
.+ +.|+|++++|||+|||+|.|+||++.+|+++|+
T Consensus 97 ~~~~~~~l~~~g~~~q~~~~l~~~~~g~~~~~~a~tEp~~Gsd~~~~~~t~A~~~~~g~~lnG~K~~~s~~~~Ad~~~v~ 176 (385)
T 2eba_A 97 SSLVMYPIYAYGSEEQKREFLPKLARGEMVGCFGLTEPDGGSDPYGNMKTRARREGDTWVLNGTKMWITNGNLAHLAVIW 176 (385)
T ss_dssp HHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCCTTCTTSTTTTCCCEEEC--CEEEEEEEEEEEETTTTCSEEEEE
T ss_pred HhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEeCCCCcCCCccccCeeEEEEeCCEEEEEeeeeccCCCcccCEEEEE
Confidence 12 267899999999999999999999999999999
Q ss_pred EEeCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHH
Q psy1215 85 ATTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQ 164 (260)
Q Consensus 85 a~~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~ 164 (260)
+++++ + .+++|+||+++|||++.+.|+++|+++++++++.|+||+||++++| ..+.|+......+...|+.+++.
T Consensus 177 a~~~~--g--~~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~f~~v~Vp~~~~l-~~~~g~~~~~~~l~~~r~~~aa~ 251 (385)
T 2eba_A 177 AKDEG--G--EVLGFLVPTDTPGFQAREVKRKMSLRASVTSELVLEEVRVPESLRL-PKALGLKAPLSCLTQARFGIAWG 251 (385)
T ss_dssp EECC-------EEEEEEETTSTTEEEEECCSBSSSCSSCEEEEEEEEEEEEGGGBC-TTCCSTHHHHHHHHHHHHHHHHH
T ss_pred EEeCC--C--cEEEEEEeCCCCCeEecccccccccccCceeEEEEccEEEcHHHcc-CCCchHHHHHHHHHHHHHHHHHH
Confidence 99862 2 3899999999999999999999999999999999999999999999 67889888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Q psy1215 165 ALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATY 244 (260)
Q Consensus 165 ~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 244 (260)
++|+++++++.+++|+++|.+||+|+.++|.+|++++++..+++++|++++.++..+|.+.+.....+++|.++++.+.+
T Consensus 252 ~~G~a~~al~~a~~ya~~R~~fg~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~g~~~~~~~~~aK~~a~~~a~~ 331 (385)
T 2eba_A 252 AMGALEAVYEEAVAFAKSRSTFGEPLAKKQLVQAKLAEMLAWHTEGLLLAWRLARLKDEGKLTPAQVSLAKRQNVWKALQ 331 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHCBSSSSBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCeeCCeeHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998777777889999999999999
Q ss_pred HHHHHHHccCCCCcC
Q psy1215 245 NAHQAIQIPIITKYL 259 (260)
Q Consensus 245 ~~~~~~~~~Gg~g~~ 259 (260)
+++.++|++||.||+
T Consensus 332 v~~~a~q~~Gg~g~~ 346 (385)
T 2eba_A 332 AARMARDILGGSGIT 346 (385)
T ss_dssp HHHHHHHHHGGGGGB
T ss_pred HHHHHHHHhCCcccC
Confidence 999999999999986
No 22
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A*
Probab=100.00 E-value=1.2e-47 Score=337.34 Aligned_cols=254 Identities=26% Similarity=0.406 Sum_probs=236.8
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.+.|.+.+.++.+.+|.+.|++|++.||+++.+| +|
T Consensus 61 ~l~~~~r~f~~~~~~p~~~~~~~~~~~p~~~~~~l~e~Gl~~l~~p-e~GG~G~~~~~~~~v~eela~~~~~~~~~~~~~ 139 (436)
T 2ix5_A 61 AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIK-GYGCPGLSITANAIATAEIARVDASCSTFILVH 139 (436)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHTCCCGGGHHHHHTTTCTTTTCC-STTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCChhhHHHHhcCCCCHHHHHHHHHcCCCcCcCC-CCCCCCCCHHHHHHHHHHHHhhCccHHHHHHhH
Confidence 3789999999999988887777788999999999999999999999 77
Q ss_pred --------------------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEE
Q psy1215 50 --------------------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFA 85 (260)
Q Consensus 50 --------------------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a 85 (260)
.+++|+|++++|||+|||+|.|+||+..||+++|++
T Consensus 140 ~~~~~~~l~~~gt~~qk~~~l~~l~~G~~~~a~a~tEp~~GSd~~~~~t~A~~~gdg~vLnG~K~~is~a~~Ad~~lv~A 219 (436)
T 2ix5_A 140 SSLGMLTIALCGSEAQKEKYLPSLAQLNTVACWALTEPDNGSDASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFA 219 (436)
T ss_dssp HTTHHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTEEEEEEEEEEEETTTTCSEEEEEE
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhCCCeeeEEEecCCCCCCCcccceEEEEEeCCEEEEeeeccCCCCCcccCEEEEEE
Confidence 235789999999999999999999999999999999
Q ss_pred EeCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHH
Q psy1215 86 TTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQA 165 (260)
Q Consensus 86 ~~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~ 165 (260)
+++++ +++++|+||++.|||++.+.|+++|+++++++++.|+||+||++++|+.. .|+......+...|+.+++.+
T Consensus 220 r~~~~---~~~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~-~g~~~~~~~l~~~r~~~aa~~ 295 (436)
T 2ix5_A 220 RNTTT---NQINGFIVKKDAPGLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGV-NSFQDTSKVLAVSRVMVAWQP 295 (436)
T ss_dssp EETTT---SSEEEEEEETTCTTEEEEECCCBSSSTTSCEEEEEEEEEEEEGGGBCTTC-SSHHHHHHHHHHHHHHHHHHH
T ss_pred EECCC---CcEEEEEEECCCCCeEeeccccccCCCcCCceeEEeccEEECHHHcCCcc-ccHHHHHHHHHHHHHHHHHHH
Confidence 98642 36899999999999999999999999999999999999999999999875 578888888999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHH
Q psy1215 166 LGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYN 245 (260)
Q Consensus 166 ~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 245 (260)
+|+++++++.+++|+++|.+||+|++++|.+|++|+++.++++++|+++++++..+|.+.+.....+++|.++++.+.++
T Consensus 296 ~G~a~~al~~a~~ya~~R~qfG~pi~~~q~vq~~la~~~~~~~aar~l~~~aa~~~d~g~~~~~~as~aK~~a~e~a~~v 375 (436)
T 2ix5_A 296 IGISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMTPGQASLGKAWISSKARET 375 (436)
T ss_dssp HHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCeeCCcchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987766778899999999999999
Q ss_pred HHHHHHccCCCCcC
Q psy1215 246 AHQAIQIPIITKYL 259 (260)
Q Consensus 246 ~~~~~~~~Gg~g~~ 259 (260)
++.++|++||.||+
T Consensus 376 ~~~a~q~~Gg~G~~ 389 (436)
T 2ix5_A 376 ASLGRELLGGNGIL 389 (436)
T ss_dssp HHHHHHHTGGGGGB
T ss_pred HHHHHHHhCccccc
Confidence 99999999999986
No 23
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=100.00 E-value=7.7e-48 Score=349.25 Aligned_cols=255 Identities=35% Similarity=0.549 Sum_probs=235.8
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcC-CCCHHHHHHHHHcCCccccCcccc------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREH-LYPKEQIKKMGELGLMGVEVPEDL------------------------------ 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~G~~~~~vp~~~------------------------------ 49 (260)
++++.+++|+++.+.|...+.++.+ .+|.++|++|++.||+++.+|++|
T Consensus 39 ~l~~~vr~f~~~~~~p~~~~~d~~~~~~~~~~~~~l~e~Gl~gl~vPee~GG~G~~~~~~~~v~Eel~~~~~~~~~~~~~ 118 (597)
T 3owa_A 39 MIAKTTEDFIVNEVLPELEYLEQHEFDRSVRLLKEAGELGLLGADVPEEYGGIGLDKVSSALIAEKFSRAGGFAITHGAH 118 (597)
T ss_dssp HHHHHHHHHHHHHTGGGHHHHTTTCHHHHHHHHHHHHHTTTTCTTSCGGGTCCCCCHHHHHHHHHHHGGGTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHhcCCcCCHHHHHHHHHCCCCcCCCChhhCCCCCCHHHHHHHHHHHHccchHHHHHHHH
Confidence 4789999999999999888888765 689999999999999999999998
Q ss_pred --------------------------------------------cccccEEEEe--CCeEEEeeeeeeeeCCCCCcEEEE
Q psy1215 50 --------------------------------------------GAASTVAKQD--SNGWTLNGTKAWITNGYESEATVV 83 (260)
Q Consensus 50 --------------------------------------------~~~~~~a~~~--~~g~~l~G~k~~~s~~~~a~~~~v 83 (260)
.+++|+|+++ +++|+|||+|.|+||++.||+++|
T Consensus 119 ~~~~~~~l~~~Gt~eQk~~~Lp~la~Ge~~~a~alTEp~aGSD~~~~~T~A~~~~dG~~yvLnG~K~~is~a~~Ad~~lV 198 (597)
T 3owa_A 119 VGIGSLPIVLFGNEEQKKKYLPLLATGEKLAAYALTEPGSGSDALGAKTTARLNAEGTHYVLNGEKQWITNSAFADVFIV 198 (597)
T ss_dssp HTTTTHHHHHHCCHHHHHHHHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEEEEETTTTCSEEEE
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhCCCcceeeEecCCCCCCCcccceeEEEEeCCCCEEEEeeEEEEeCCCccCCEEEE
Confidence 3457889885 456999999999999999999999
Q ss_pred EEEeCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHH
Q psy1215 84 FATTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIAS 163 (260)
Q Consensus 84 ~a~~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a 163 (260)
++++++ +++++|+||+++|||++.+.|+++|+++++++++.|+||+||.+++||..+.|+......+..+|+.+++
T Consensus 199 ~Art~~----~g~s~flV~~~~pGv~v~~~~~~~Glrgs~t~~v~fddV~VP~~~lLG~~g~G~~~~~~~l~~~R~~~aa 274 (597)
T 3owa_A 199 YAKIDG----EHFSAFIVEKDYAGVSTSPEEKKMGIKCSSTRTLILEDALVPKENLLGEIGKGHIIAFNILNIGRYKLGV 274 (597)
T ss_dssp EEEETT----TEEEEEEEETTSTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCC----CceEEEEEeCCCCCeEEecccccccCCCCCceEEEEeceeecHHHhcCcccchHHHHHHhhHhHHHHHHH
Confidence 999864 3789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------------------
Q psy1215 164 QALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQ------------------ 225 (260)
Q Consensus 164 ~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~------------------ 225 (260)
.++|+++++++.+++|+++|.+||+|+.++|.+|++++++.+.++++|+++++++..+|.+.
T Consensus 275 ~~lG~a~~al~~a~~ya~~R~qfG~pi~~~q~vq~~LA~m~~~~~aar~l~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~ 354 (597)
T 3owa_A 275 GTVGSAKRAVEISAQYANQRQQFKQPIARFPLIQEKLANMAAKTYAAESSVYRTVGLFESRMSTLSEEEVKDGKAVAASI 354 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCeeCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccchhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999887532
Q ss_pred -CchhHHHHHHHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 226 -PFTKEAAMAKLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 226 -~~~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
+.....+++|+++++.+.++++.++|++||.||+
T Consensus 355 ~~~~~~~s~aK~~ase~a~~v~~~a~qi~GG~G~~ 389 (597)
T 3owa_A 355 AEYAIECSLNKVFGSEVLDYTVDEGVQIHGGYGFM 389 (597)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccc
Confidence 2345688999999999999999999999999996
No 24
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A*
Probab=100.00 E-value=2.6e-46 Score=325.45 Aligned_cols=253 Identities=29% Similarity=0.417 Sum_probs=235.2
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.+.|...+.++++.+|.++|+.|++.||+++.+ ++|
T Consensus 20 ~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~-~~~GG~g~~~~~~~~~~eel~~~~~~~~~~~~~~ 98 (392)
T 1siq_A 20 LIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTI-KGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQ 98 (392)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHTCCCTHHHHHHHHTTCSSTTC-EETTEECCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcchHHHHhhCCCCHHHHHHHHhCCCCcccH-HhhCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 378999999998998888888888899999999999999999999 888
Q ss_pred --------------------------------------------cccccEEEEe--CCeEEEeeeeeeeeCCCCCcEEEE
Q psy1215 50 --------------------------------------------GAASTVAKQD--SNGWTLNGTKAWITNGYESEATVV 83 (260)
Q Consensus 50 --------------------------------------------~~~~~~a~~~--~~g~~l~G~k~~~s~~~~a~~~~v 83 (260)
.++.|+|+++ +|||+|||+|.|+||++.+|+++|
T Consensus 99 ~~~~~~~l~~~g~~~q~~~~l~~l~~g~~~~~~a~tEp~~gsd~~~~~t~A~~~~~~~g~~lnG~K~~vs~~~~Ad~~~v 178 (392)
T 1siq_A 99 SSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVV 178 (392)
T ss_dssp HHTTHHHHHHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEEEEEEEEETGGGCSEEEE
T ss_pred HhHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEECCCCCCcCccccEEEEEEeCCCCEEEEEEEEEeecCCcccCEEEE
Confidence 2457899999 999999999999999999999999
Q ss_pred EEEeCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHH
Q psy1215 84 FATTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIAS 163 (260)
Q Consensus 84 ~a~~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a 163 (260)
++++++ +++++|+||+++|||++.+.|+++|+++++++++.||||+||++++++.. .|+......+...|+.+++
T Consensus 179 ~a~~~~----g~~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~-~g~~~~~~~l~~~r~~~aa 253 (392)
T 1siq_A 179 WARCED----GCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGA-SSLGGPFGCLNNARYGIAW 253 (392)
T ss_dssp EEEETT----SCEEEEEEETTCTTEECCBCCCCSSSTTSCEEEEEEEEEEEEGGGBCTTC-CSSHHHHHHHHHHHHHHHH
T ss_pred EEEECC----CCEEEEEEeCCCCCeEeccccccccccCCceEEEEEccEEECHHHcCCcc-cCHHHHHHHHHHHHHHHHH
Confidence 999863 24889999999999999999999999999999999999999999999875 5777777788889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHH
Q psy1215 164 QALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETAT 243 (260)
Q Consensus 164 ~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 243 (260)
.++|+++++++.+++|+++|.+||+++.++|.+|++++++.++++++|++++.+++.+|.+.+.....+++|.++++.+.
T Consensus 254 ~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~~ar~~~~~aa~~~d~~~~~~~~~~~aK~~~~~~a~ 333 (392)
T 1siq_A 254 GVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKAL 333 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCeeCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999877667788999999999999
Q ss_pred HHHHHHHHccCCCCcC
Q psy1215 244 YNAHQAIQIPIITKYL 259 (260)
Q Consensus 244 ~~~~~~~~~~Gg~g~~ 259 (260)
++++.++|++||.||+
T Consensus 334 ~v~~~a~q~~Gg~g~~ 349 (392)
T 1siq_A 334 DIARQARDMLGGNGIS 349 (392)
T ss_dssp HHHHHHHHHTGGGGGS
T ss_pred HHHHHHHHHhCCcccc
Confidence 9999999999999986
No 25
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}
Probab=100.00 E-value=3.2e-46 Score=338.53 Aligned_cols=255 Identities=36% Similarity=0.577 Sum_probs=232.6
Q ss_pred CHHHHHHHHHhcccCchhhhhhh-cCCCCHHHHHHHHHcCCccccCcccc------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDR-EHLYPKEQIKKMGELGLMGVEVPEDL------------------------------ 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------ 49 (260)
++++.+++|+++.+.|...+.++ ...+|.++|+.|++.||+++.+|++|
T Consensus 34 ~l~~~~~~~~~~~~~p~~~~~~~~~~~~p~~~~~~l~e~Gl~~l~vPee~GG~g~~~~~~~~v~eel~~~~s~~~~~~~~ 113 (577)
T 2z1q_A 34 EIARTTRTFVEREVLPLLERMEHGELELNVPLMRKAGELGLLAIDVPEEYGGLDLPKVISTVVAEELSGSGGFSVTYGAH 113 (577)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHTTCGGGHHHHHHHHHHTTTTSTTSCGGGTCCCCCHHHHHHHHHHHTTSCTHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHhhhcccCCCCHHHHHHHHHCCCCCcCCChhhCCCCCCHHHHHHHHHHHhhcccHHHHHhhh
Confidence 37889999998888887544443 24789999999999999999999998
Q ss_pred --------------------------------------------cccccEEEEe--CCeEEEeeeeeeeeCCCCCcEEEE
Q psy1215 50 --------------------------------------------GAASTVAKQD--SNGWTLNGTKAWITNGYESEATVV 83 (260)
Q Consensus 50 --------------------------------------------~~~~~~a~~~--~~g~~l~G~k~~~s~~~~a~~~~v 83 (260)
.++.|+|+++ +++|+|||+|.|+||++.||+++|
T Consensus 114 ~~~~~~~l~~~Gt~eQk~~~Lp~l~~G~~~~a~alTEp~aGSD~~~~~t~A~~~~dG~~~vLnG~K~~it~a~~Ad~~~V 193 (577)
T 2z1q_A 114 TSIGTLPLVYFGTEEQKRKYLPKLASGEWIAAYCLTEPGSGSDALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTV 193 (577)
T ss_dssp HTTTTHHHHHHCCHHHHHTTHHHHHHTSSCEEEECCBTTBSSSGGGCCCEEEECTTSSEEEEEEEEEEEETTTTCSEEEE
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccCeeEEEEeCCCCEEEEEEEeeCCCCCCccCEEEE
Confidence 3457889884 558999999999999999999999
Q ss_pred EEEeCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHH
Q psy1215 84 FATTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIAS 163 (260)
Q Consensus 84 ~a~~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a 163 (260)
++++++ +++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++||..+.|+...+..+..+|+.+++
T Consensus 194 ~Ar~~g----~gis~flVp~~~pGv~v~~~~~~~G~~~~~~~~v~fddv~VP~~~llg~~g~g~~~~~~~l~~~R~~~aa 269 (577)
T 2z1q_A 194 FAKVDG----EHFTAFLVERDTPGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLNVGRYKLGA 269 (577)
T ss_dssp EEEETT----TEEEEEEEETTCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESCTTCTHHHHHHHHHHHHHHHHH
T ss_pred EEEeCC----CeeEEEEEeCCCCCeEecCCCCCCCCCCCceeEEEecceeccHHHccCCCCchHHHHHHHHHHHHHHHHH
Confidence 999853 5789999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CCchh
Q psy1215 164 QALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNK--------------QPFTK 229 (260)
Q Consensus 164 ~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~--------------~~~~~ 229 (260)
.++|+++++++.+.+|+++|.+||+||.++|.+|++|+++.+.++++|++++.++..+|.+ .+...
T Consensus 270 ~~~G~a~~al~~a~~ya~~R~qfg~pi~~~q~vq~~La~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~~ 349 (577)
T 2z1q_A 270 GAVGGAKRALELSAQYATQRVQFGRPIGRFGLIQQKLGEMASRIYAAESAVYRTVGLIDEALLGKKGPEAVMAGIEEYAV 349 (577)
T ss_dssp HHHHHHHHHHHHHHHHHHHCBCSSSBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhCccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhhhhcchhhHH
Confidence 9999999999999999999999999999999999999999999999999999999888754 23346
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 230 EAAMAKLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 230 ~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
.++++|.++++.+.++++.|+|++||.||+
T Consensus 350 ~~a~aK~~ase~a~~v~~~a~qi~GG~G~~ 379 (577)
T 2z1q_A 350 EASIIKVLGSEVLDYVVDEGVQIHGGYGYS 379 (577)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGGGB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCeeec
Confidence 788999999999999999999999999996
No 26
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=100.00 E-value=1.3e-45 Score=335.48 Aligned_cols=256 Identities=34% Similarity=0.508 Sum_probs=234.2
Q ss_pred HHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc--------------------------------
Q psy1215 2 LYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL-------------------------------- 49 (260)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~-------------------------------- 49 (260)
+++++++|+++.+.| .+.|+...+|.+.|+.|++.||+++.+|++|
T Consensus 57 l~~~~~~~~~~~~~~--~~~d~~~~~p~~~~~~l~e~Gl~~l~~P~e~GG~gl~~~~~~~v~e~l~~~~~s~a~~~~~~~ 134 (607)
T 2uxw_A 57 LVEPVSRFFEEVNDP--AKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQ 134 (607)
T ss_dssp HHHHHHHHHHHTCCH--HHHHHHTSCCHHHHHHHHHTTTTCTTSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCH--HHhccccCCCHHHHHHHHHcCCcCCCCChhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 678899999887755 4457778899999999999999999999998
Q ss_pred -------------------------------------------cccccEEEEeC--CeEEEeeeeeeeeCCCCCcEEEEE
Q psy1215 50 -------------------------------------------GAASTVAKQDS--NGWTLNGTKAWITNGYESEATVVF 84 (260)
Q Consensus 50 -------------------------------------------~~~~~~a~~~~--~g~~l~G~k~~~s~~~~a~~~~v~ 84 (260)
.++.|+|++++ ++|+|||+|.|+||++.+|+++|+
T Consensus 135 ~~g~~~l~~~Gt~eqk~~~Lp~l~~G~~~~~~alTEp~aGSD~~~~~t~A~~~~dG~~y~LnG~K~~is~~~~Ad~~lV~ 214 (607)
T 2uxw_A 135 SIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVF 214 (607)
T ss_dssp TTTTHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEECTTSSEEEEEEEEEEEETTTTCSEEEEE
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCCcccceeEEEEeCCCCEEEEEeEEEeecCCcccCEEEEE
Confidence 23578998863 489999999999999999999999
Q ss_pred EEeCCCC---C--CCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCCCccHHHHHHHHhhHhH
Q psy1215 85 ATTDKSK---K--HKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRI 159 (260)
Q Consensus 85 a~~~~~~---~--~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~ 159 (260)
+++++.+ + .+++++|+||++.|||++.+.|+++|+++++++++.|+||+||.+++||.++.|+..++..++.+|+
T Consensus 215 Ar~~~~~~~~g~~~~gis~flVp~~~~Gv~v~~~~~~~G~rg~~t~~v~fddv~VP~~~llG~~g~G~~~~~~~l~~~Rl 294 (607)
T 2uxw_A 215 AKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRF 294 (607)
T ss_dssp EEEEEECTTTCCEEEEEEEEEEEGGGSSEEECCCCCCSSCTTSCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHH
T ss_pred EEecCCCcccCCCCCceEEEEEeCCCCCeEEecCccccCCCCCCeeEEEeccEEecHHHhcCCCCchHHHHHHHHHHHHH
Confidence 9986321 1 3578999999999999999999999999999999999999999999999999999998889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchhHHHHHHHHH
Q psy1215 160 GIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQ-PFTKEAAMAKLAA 238 (260)
Q Consensus 160 ~~~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~-~~~~~~~~~k~~~ 238 (260)
.+++.++|+++++++.+++|+++|.+||+||+++|.||++|+++.+.++++|++++.++..+|.+. +....++++|.++
T Consensus 295 ~~aa~~~G~a~~al~~a~~ya~~R~qfG~pi~~~~~vq~~La~~~~~~eaaral~~~aa~~~d~~~~~~~~~~~~aK~~~ 374 (607)
T 2uxw_A 295 GMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKIFG 374 (607)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCchhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998764 4457889999999
Q ss_pred HHHHHHHHHHHHHccCCCCcC
Q psy1215 239 SETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 239 ~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
++.+.++++.++|++||.||+
T Consensus 375 se~a~~v~~~a~qv~GG~G~~ 395 (607)
T 2uxw_A 375 SEAAWKVTDECIQIMGGMGFM 395 (607)
T ss_dssp HHHHHHHHHHHHHHHTHHHHS
T ss_pred HHHHHHHHHHHHHHhCCcccc
Confidence 999999999999999999986
No 27
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina}
Probab=100.00 E-value=6.6e-46 Score=327.28 Aligned_cols=259 Identities=20% Similarity=0.343 Sum_probs=232.6
Q ss_pred CHHHHHHHHHhcccCchhhhhhh----cC-CCC--HHHHHHHHHcCCccccCcccc------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDR----EH-LYP--KEQIKKMGELGLMGVEVPEDL------------------------ 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~----~~-~~~--~~~~~~l~~~G~~~~~vp~~~------------------------ 49 (260)
++++.+++|+++.+.|...++++ .+ ++| +++|++|++.||+++.+|++|
T Consensus 13 ~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~ 92 (438)
T 3mkh_A 13 GTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQISPAHGGTGGTLIESAILVEECYSVEPSA 92 (438)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHTTSCTTCHHHHHTTHHHHHHHHHTTTTGGGSCGGGTCCCCCHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHhhccccccCcCCCcHHHHHHHHhCCCCCCCCCcccCCCCCCHHHHHHHHHHHHhhChhH
Confidence 47899999999999887665543 33 565 899999999999999999998
Q ss_pred -----------------------------------------------c---------ccccEEEEeCCeEEEeeeeeeee
Q psy1215 50 -----------------------------------------------G---------AASTVAKQDSNGWTLNGTKAWIT 73 (260)
Q Consensus 50 -----------------------------------------------~---------~~~~~a~~~~~g~~l~G~k~~~s 73 (260)
. +++|+|++++|||+|||+|.|+|
T Consensus 93 ~~~~~~~~~~~~~l~~~g~~~~~~~l~~~~~G~g~~~~~~a~tEp~~gs~~~~sd~~~~~t~A~~~g~g~~lnG~K~~is 172 (438)
T 3mkh_A 93 ALTIFATGLGLTPINLAAGPQHAEFLAPFLSGEGSPLASLVFSEPGGVANALEKGAPGFQTTARLEGDEWVINGEKMWAT 172 (438)
T ss_dssp HHHHHHHHHHHHHHHHHCCGGGHHHHGGGSSSCSCCCEEEECCCTTCCTTTTCTTSCCCSCEEEEETTEEEEEEEECSCT
T ss_pred HHHHHHhhHHHHHHHhhCCHHHHHHHHHHhcCCCCceEEEEEccCCCCCCccccccccceeEEEEeCCEEEEEeEEEEec
Confidence 0 13678999999999999999999
Q ss_pred CCC-----CCcEEEEEEEeCC------CCCCCceEEEEEeCCC-----CC-eeecccCCcccCCCCCeeeEEEeceeeCC
Q psy1215 74 NGY-----ESEATVVFATTDK------SKKHKGISAFIVDKPT-----KG-LSLGKKEDKLGINASSTCSLIFEDCSIPA 136 (260)
Q Consensus 74 ~~~-----~a~~~~v~a~~~~------~~~~~~~~~~~v~~~~-----~g-v~~~~~~~~~G~~~~~~~~~~f~~v~Vp~ 136 (260)
|+. .||+++|++++++ .++.+++++|+||++. || |++.+.|+++|+++++++++.|+||+||+
T Consensus 173 ~a~~~~~~~Ad~~~v~a~~~~~~~~~~~~~~~g~~~flV~~~~~~~~~pG~v~v~~~~~~~G~r~~~~~~v~fddv~VP~ 252 (438)
T 3mkh_A 173 NCAGWDFKGCDLACVVCRDATTPLEEGQDPENKVMIILVTRADLDRNGEGSFEVLRHVATPGHTSVSGPHVRYTNVRVPT 252 (438)
T ss_dssp TTTCTTSSCCSEEEEEEEECSSCCCTTCCGGGGEEEEEEEHHHHHHHCTTSEEEEECCCCSSCTTCCCCEEEEEEEEEEG
T ss_pred CCCccccccCcEEEEEEEecCcccCcccCCCCceEEEEEecCccccCCCCcEEecCcCCCcCCcCCCceEEEECcEEECH
Confidence 998 8999999999853 1223579999999875 98 99999999999999999999999999999
Q ss_pred CCccCCCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHhhccccC-cccccchhHHHHHHHHHHHHHHHHHHHH
Q psy1215 137 ENLLGEPGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFG-QPIIKLQSIQQKIADMSLKLESARLLTW 215 (260)
Q Consensus 137 ~~vl~~~~~g~~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~~~~~r~~~g-~~l~~~~~v~~~la~~~~~l~~~~a~~~ 215 (260)
+++||.++.|+......+..+|+.+++.++|+++++++.+++|+++|.+|| +++.++|.+|++|+++.++++++|++++
T Consensus 253 ~~~lg~~~~g~~~~~~~l~~~r~~~aa~~lG~a~~al~~a~~ya~~R~~~g~~pi~~~q~vq~~la~~~~~~~aar~~~~ 332 (438)
T 3mkh_A 253 KNVLCPAGQGAKVAFGAFDGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGGAVPLLERQAFADLLSGVKIQTEAARALTW 332 (438)
T ss_dssp GGEEECTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSCGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEeCCCeeccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHHHhCCCCc----hhHHHHHHHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 216 RAAYLKDNKQPF----TKEAAMAKLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 216 ~~~~~~~~~~~~----~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
+++..++.+.+. ...++++|.++++.+.++++.++|++||.||+
T Consensus 333 ~aa~~~d~~~~~~~~~~~~~~~aK~~a~e~a~~~~~~a~q~~Gg~G~~ 380 (438)
T 3mkh_A 333 KAAHAMENGPGDYDARRELALAAKVFCSEAAVKACTDVINAVGISAYD 380 (438)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGC
T ss_pred HHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhcc
Confidence 999999876542 22367899999999999999999999999996
No 28
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A*
Probab=100.00 E-value=5.9e-46 Score=326.09 Aligned_cols=256 Identities=17% Similarity=0.129 Sum_probs=230.9
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|++ .+.|.+.+.|+++.+|.++|++|++.||+++.+|++|
T Consensus 39 ~l~~~~r~~~~-~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~ 117 (422)
T 2jbr_A 39 SMLEKIQQILP-QIAKNAESAEQLRRVPDENIKLLKEIGLHRAFQPKVYGGLEMSLPDFANCIVTLAGACAGTAWAFSLL 117 (422)
T ss_dssp CHHHHHHHHHH-HHHHTHHHHHHHTSCCHHHHHHHHHTTGGGSSSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHhhHHHHHcCCCCHHHHHHHHHCCchhcCCchhcCCCCCCHHHHHHHHHHHHhhCcCHHHHHHHH
Confidence 47899999996 6888888889999999999999999999999999998
Q ss_pred ------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEEEeCCCCCCCceEEE
Q psy1215 50 ------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAF 99 (260)
Q Consensus 50 ------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~~~~~~~~~~~~~~ 99 (260)
..+.|+|++++|||+|||+|.|+||+..||+++|+++++++++.+++++|
T Consensus 118 ~~~~~~l~~~g~~~q~~~~l~~g~~~~a~a~tp~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~~~g~~g~~~f 197 (422)
T 2jbr_A 118 CTHSHQIAMFSKQLQDEIWLKDPDATASSSIAPFGKVEEVEGGIILNGDYGWSSGCDHAEYAIVGFNRFDADGNKIYSFG 197 (422)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTCTTCCEEEECSCCSEEEEETTEEEEEEEEEEETTGGGCSEEEEEEEEECTTSCEEEEEE
T ss_pred HHHHHHHHhCCHHHHHHHHccCCCeEEEeecCCCeeEEEeCCEEEEeeeEeeecCCccccEEEEEEEecCCCCCceeEEE
Confidence 22478899999999999999999999999999999998643344578999
Q ss_pred EEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCCC--------Ccc-----HHHHHHHHhhHhHHHHHHHH
Q psy1215 100 IVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEP--------GMG-----FKIAMMTLDAGRIGIASQAL 166 (260)
Q Consensus 100 ~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~--------~~g-----~~~~~~~~~~~r~~~~a~~~ 166 (260)
+||++ |+++.+.|+++|+++++++++.|+||+||++++|+.. +.| +......+...|+.+++.++
T Consensus 198 lV~~~--gv~v~~~~~~~G~r~~~~~~v~fddv~VP~~~~lg~~~~~~g~~~g~g~~~~~~~~~~~~~~~~r~~~aa~~l 275 (422)
T 2jbr_A 198 VIPRS--DYEIVDNWYAQAIKSSGSKMLKLVNVFIPEYRISKAKDMMEGKSAGFGLYPDSKIFYTPYRPYFASGFSAVSL 275 (422)
T ss_dssp EEEGG--GCEEECCCCBSSSGGGCCEEEEEEEEEEEGGGEEEHHHHHHTCSTTTTSCTTCSSSSSCHHHHHTTHHHHHHH
T ss_pred EEEcC--ceEEeCCccccCcCCCCCCcEEEeeEEecHHHeecccccccCCCCcccccCCCcccccchHHHHHHHHHHHHH
Confidence 99998 9999889999999999999999999999999999764 445 44445667889999999999
Q ss_pred HHHHHHHHHHHHHHhhcc--ccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCCc----hhHHHHHHH
Q psy1215 167 GIAQASLDCAVEYASKRT--AFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKD----NKQPF----TKEAAMAKL 236 (260)
Q Consensus 167 G~~~~~l~~~~~~~~~r~--~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~----~~~~~----~~~~~~~k~ 236 (260)
|+++++++.+++|+++|. +||+++.++|.+|++|+++.++++++|++++.+++.++ .+.+. ....+++|.
T Consensus 276 G~a~~al~~a~~ya~~R~~~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~g~~~~~~~~~~~~~aK~ 355 (422)
T 2jbr_A 276 GIAERMIEAFKEKQRNRVRAYTGANVGLATPALMRIAESTHQVAAARALLEKTWEDHRIHGLNHQYPNKETLAFWRTNQA 355 (422)
T ss_dssp HHHHHHHHHHHHHHTTCBCTTTCCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 999999999999999998 99999999999999999999999999999999999988 55442 356889999
Q ss_pred HHHHHHHHHHHHHHHccCCCCcC
Q psy1215 237 AASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 237 ~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
++++.+.++++.++|++||.||+
T Consensus 356 ~a~e~a~~v~~~a~q~~Gg~g~~ 378 (422)
T 2jbr_A 356 YAVKMCIEAVDRLMAAAGATSFM 378 (422)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGGB
T ss_pred HHHHHHHHHHHHHHHHhCHHhhh
Confidence 99999999999999999999986
No 29
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP}
Probab=100.00 E-value=8e-46 Score=324.53 Aligned_cols=256 Identities=14% Similarity=0.145 Sum_probs=227.0
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++ +.|.+.+.|+++.+|.++|++|++.||+++.+|++|
T Consensus 24 ~l~~~~r~~~~~-~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~l~~P~e~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~ 102 (414)
T 2or0_A 24 RVLDRIEVVAEE-IRGQAVQSEADCRLTDAAAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGVAALDGASGWVTGIV 102 (414)
T ss_dssp HHHHHHHHTHHH-HHHHHHHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHhHHHHHhcCCCCHHHHHHHHHCCCchhcCchhhCCCCCCHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 378899999975 888888889999999999999999999999999998
Q ss_pred ------------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEEEeCCCCCCC---ce
Q psy1215 50 ------------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHK---GI 96 (260)
Q Consensus 50 ------------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~~~~~~~~~---~~ 96 (260)
..+.|+|++++|||+|||+|.|+||+..||+++|+++++++++.+ ++
T Consensus 103 ~~~~~~l~~~g~~~q~~~~l~~g~~~~a~a~tp~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~~~g~~~~~g~ 182 (414)
T 2or0_A 103 GVHPWELAFADPQVQEEIWGEDNDTWMASPYAPMGVATPVDGGYVLKGRWSFSSGTDHCQWAFLGAMVGDGEGGIATPSS 182 (414)
T ss_dssp TTHHHHHTTSCHHHHHHHHSSCTTCCEECCCSCCEEEEEETTEEEEEEEEEEETTGGGCSEEEEEEEECC-----CCCSE
T ss_pred HHHHHHHHhCCHHHHHHHHccCCCeEEEeccCCCceeEEECCeEEEEeeEeccCCCchhhEEEEEEEecCCCCCccccee
Confidence 124678999999999999999999999999999999987432333 78
Q ss_pred EEEEEeCCCCCeeec-ccCCcccCCCCCeeeEEEeceeeCCCCccCC--------CC----ccHHHHHHHHhhHhHHHHH
Q psy1215 97 SAFIVDKPTKGLSLG-KKEDKLGINASSTCSLIFEDCSIPAENLLGE--------PG----MGFKIAMMTLDAGRIGIAS 163 (260)
Q Consensus 97 ~~~~v~~~~~gv~~~-~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~--------~~----~g~~~~~~~~~~~r~~~~a 163 (260)
++|+||++ ||++. ++|+++|+++++++++.||||+||++++|+. ++ .|+......+...|+.+++
T Consensus 183 ~~flV~~~--gv~v~~~~~~~~G~r~~~~~~v~fd~v~VP~~~~lg~~~~~~g~~~g~~~~~g~~~~~~~~~~~r~~~aa 260 (414)
T 2or0_A 183 LHVILPRT--DYQIVEDTWDVIGLRGTGSKDLIVDGAFVPGYRTLNAAKVMDGRAQKEAGRPEPLFNMPYSCMFPLGITA 260 (414)
T ss_dssp EEEEEEGG--GCEEETTCCCBSSCGGGCCEEEEEEEEEEEGGGEEEHHHHHHSHHHHHHTCSCSGGGSCHHHHHHHHHHH
T ss_pred EEEEEEhh--hcEEecCCCccccCcccCCCcEEEccEEecHHHeeccccccccCCCccccCCCccccccHHHHHHHHHHH
Confidence 99999998 99998 8899999999999999999999999999975 22 2344444567789999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccc-CcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCCc----hhHHHHH
Q psy1215 164 QALGIAQASLDCAVEYASKRTAF-GQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKD----NKQPF----TKEAAMA 234 (260)
Q Consensus 164 ~~~G~~~~~l~~~~~~~~~r~~~-g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~----~~~~~----~~~~~~~ 234 (260)
.++|+++++++.+++|+++|.+| |+++.++|.+|++|+++.++++++|++++.+++.++ .+.+. ....+++
T Consensus 261 ~~lG~a~~al~~a~~ya~~R~~f~G~~i~~~q~vq~~la~~~~~~~aar~l~~~aa~~~~~~~~~g~~~~~~~~~~~~~a 340 (414)
T 2or0_A 261 AVIGITEGALACHIAVQKDRVAITGQKIKEDPYVLSAIGESAAEINASRVSLIETADRFYDKVDAGKEITFEERAIGRRT 340 (414)
T ss_dssp HHHHHHHHHHHHHHHHHTTCBCTTSCBGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999 999999999999999999999999999999999988 55442 3467899
Q ss_pred HHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 235 KLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 235 k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
|.++++.+.++++.++|++||.||+
T Consensus 341 K~~a~e~a~~v~~~a~q~~Gg~g~~ 365 (414)
T 2or0_A 341 QIAAAWRAVRAADEIFARAGGGALH 365 (414)
T ss_dssp HHHHHHHHHHHHHHHHTTSCGGGGB
T ss_pred HHHHHHHHHHHHHHHHHhhChHhhc
Confidence 9999999999999999999999986
No 30
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A
Probab=100.00 E-value=5.8e-46 Score=323.53 Aligned_cols=255 Identities=17% Similarity=0.204 Sum_probs=227.5
Q ss_pred HHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc--------------------------------
Q psy1215 2 LYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL-------------------------------- 49 (260)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~-------------------------------- 49 (260)
+++.+++|++ .+.|.+.+.|+++.+|.++|++|++.||+++.+|++|
T Consensus 12 l~~~~~~~~~-~~~~~~~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~~~~~~~~ 90 (394)
T 2rfq_A 12 VMQRLDALLP-TLRERAQETEDLRRIPDDSMKALQETGFFRLLQPEQWGGYQADPVLFYSAVRKIASACGSTGWVSSIIG 90 (394)
T ss_dssp HHHHHHHHHH-HHHHTHHHHHHHTSCCHHHHHHHHHHTGGGTTSCGGGTCCCCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHhHHHHHhcCCCCHHHHHHHHHCCCceecCchhhCCCCCCHHHHHHHHHHHHhhChhHHHHHHHHH
Confidence 7899999996 5888888899999999999999999999999999998
Q ss_pred -----------------------------cccccEEEEeCCeEEEeeeeeeeeCCCCCcEEEEEEEeCCCCCCCceEEEE
Q psy1215 50 -----------------------------GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFI 100 (260)
Q Consensus 50 -----------------------------~~~~~~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~~~~~~~~~~~~~~~ 100 (260)
..+.|+|++++|||+|||+|.|+||+.++|+++|+++++++++++++++|+
T Consensus 91 ~~~~~l~~~g~~~q~~~~l~~g~~~~~~a~tp~t~A~~~~~g~~lnG~K~~is~a~~Ad~~~v~a~~~~~g~~~~~~~fl 170 (394)
T 2rfq_A 91 VHNWHLALFSQQAQEDVWGNDTDVRISSSYAPMGAGQVVDGGYTVNGAWAWSSGCDHASWAVLGGPVIKDGRPVDFVSFL 170 (394)
T ss_dssp HHHHHHTTSCHHHHHHHHSSCTTCCEEEECSCSEEEEEETTEEEEEEEEEEETTGGGCSEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHhCCHHHHHHHhCCCCCeEEEeccCCCceEEEeCCeEEEeeeEeccCCCcccceEEEeeeecCCCCCCceeEEE
Confidence 224678999999999999999999999999999999984322234789999
Q ss_pred EeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccCC--------CC----ccHHHHHHHHhhHhHHHHHHHHHH
Q psy1215 101 VDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGE--------PG----MGFKIAMMTLDAGRIGIASQALGI 168 (260)
Q Consensus 101 v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~~--------~~----~g~~~~~~~~~~~r~~~~a~~~G~ 168 (260)
||++ |+++.+.|+++|+++++++++.||||+||++++|+. ++ .|+......+...|+.+++.++|+
T Consensus 171 V~~~--gv~v~~~~~~~G~~~~~~~~v~fd~v~Vp~~~~lg~~~~~~g~~~g~~~~~g~~~~~~~~~~~r~~~aa~~~G~ 248 (394)
T 2rfq_A 171 IPRE--DYRIDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGLERNTAPVYKMPWGTIHPTTISAPIVGM 248 (394)
T ss_dssp EEGG--GCEEECCCCBSSCGGGCCEEEEEEEEEEEGGGEEEHHHHHTTCCGGGTTCCCGGGGSCHHHHHHHHHHHHHHHH
T ss_pred EEhh--hcEEeCCccccccccCCCCceEEcceEcChHHhcccccccccCCCCcccCCCccccccHHHHHHHHHHHHHHHH
Confidence 9998 999988999999999999999999999999999975 22 234444456778999999999999
Q ss_pred HHHHHHHHHHHHhhcc---ccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCCc----hhHHHHHHHH
Q psy1215 169 AQASLDCAVEYASKRT---AFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKD----NKQPF----TKEAAMAKLA 237 (260)
Q Consensus 169 ~~~~l~~~~~~~~~r~---~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~----~~~~~----~~~~~~~k~~ 237 (260)
++++++.+++|+++|. +||+++.++|.+|++|+++..+++++|++++++++.+| .+.+. ....+++|.+
T Consensus 249 a~~al~~a~~ya~~R~~~~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~~~~~~~g~~~~~~~~~~~~~aK~~ 328 (394)
T 2rfq_A 249 AYGAYDAHVEHQGKRVRAAFAGEKAKDDPFAKVRIAEASSDIDAAWRQLSGNVADEYALLVAGEEVPFELRLRARRDQVR 328 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCcCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999999999999999999999988 65442 3467899999
Q ss_pred HHHHHHHHHHHHHHccCCCCcC
Q psy1215 238 ASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 238 ~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
+++.+.++++.++|++||.||+
T Consensus 329 a~~~a~~~~~~a~q~~Gg~g~~ 350 (394)
T 2rfq_A 329 ATGRAISSIDKLFESSGATALA 350 (394)
T ss_dssp HHHHHHHHHHHHHHHHGGGGGB
T ss_pred HHHHHHHHHHHHHHHhChhhhh
Confidence 9999999999999999999986
No 31
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.4e-45 Score=320.96 Aligned_cols=259 Identities=24% Similarity=0.330 Sum_probs=229.1
Q ss_pred CHHHHHHHHHhcccCchhh---hhhhc-----CC-----CCHHHHHHHHHcCCccccCcc--cc----------------
Q psy1215 1 MLYKTVRDFTEGELKPIAA---KLDRE-----HL-----YPKEQIKKMGELGLMGVEVPE--DL---------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~---~~~~~-----~~-----~~~~~~~~l~~~G~~~~~vp~--~~---------------- 49 (260)
++++.+++|+++.+.|... +.++. .+ ++.++|++|++.||+++.+|+ .+
T Consensus 29 ~l~~~~r~f~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~~l~~P~G~g~~~~~~~~v~eel~~~~ 108 (428)
T 2wbi_A 29 EVLIKVKHFMKQHILPAEKEVTEFYVQNENSVDKWGKPLVIDKLKEMAKVEGLWNLFLPAVSGLSHVDYALIAEETGKCF 108 (428)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHC----------CCSCCHHHHHHHHHHHHTTCCSTTCHHHHCCCHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHhhCCchhcchhHHhhhccccccccCCcccHHHHHHHHHHCCCCeecCCCCCCCCHHHHHHHHHHHHhhc
Confidence 3789999999988877665 54432 23 358999999999999999995 11
Q ss_pred -------------------------------------------------c-------ccccEEEEeCCeEEEeeeeeeee
Q psy1215 50 -------------------------------------------------G-------AASTVAKQDSNGWTLNGTKAWIT 73 (260)
Q Consensus 50 -------------------------------------------------~-------~~~~~a~~~~~g~~l~G~k~~~s 73 (260)
. ++.|+|++++|||+|||+|.|+|
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~l~~G~~~~~~a~tEp~~aGsd~~~~~t~A~~~~~g~~lnG~K~~is 188 (428)
T 2wbi_A 109 FAPDVFNCQAPDTGNMEVLHLYGSEEQKKQWLEPLLQGNITSCFCMTEPDVASSDATNIECSIQRDEDSYVINGKKWWSS 188 (428)
T ss_dssp THHHHTTCCTTHHHHHHHHHHHCCHHHHHHTHHHHHHTSSEEEEECCCTTSCTTSGGGCCCEEEEETTEEEEEEEEEEEE
T ss_pred chhhhHhhhccchhHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEEecCCcCCCCcccceEEEEEeCCEEEEEeEEeccC
Confidence 1 24689999999999999999999
Q ss_pred CCCC--CcEEEEEEEeCCCC--CCCceEEEEEeCCCCCeeecccCCcccCCCCC---eeeEEEeceeeCCCCccCCCCcc
Q psy1215 74 NGYE--SEATVVFATTDKSK--KHKGISAFIVDKPTKGLSLGKKEDKLGINASS---TCSLIFEDCSIPAENLLGEPGMG 146 (260)
Q Consensus 74 ~~~~--a~~~~v~a~~~~~~--~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~---~~~~~f~~v~Vp~~~vl~~~~~g 146 (260)
|+.+ ||+++|+++++++. +.+++++|+||++.|||++.++|+++|+++++ ++++.||||+||++++||.++.|
T Consensus 189 ~a~~~~Ad~~~v~art~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~~~~~~~~~~~v~fddv~VP~~~~lg~~g~g 268 (428)
T 2wbi_A 189 GAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGVKIIRPLSVFGYTDNFHGGHFEIHFNQVRVPATNLILGEGRG 268 (428)
T ss_dssp TTTSTTEEEEEEEEECCCTTSCGGGCEEEEEEETTSTTEEEEEECCBTTBCCGGGCCEEEEEEEEEEEEGGGBCSCTTCH
T ss_pred CCCCCcCCEEEEEEEeCCccCCCCCceEEEEEECCCCcEEecCCCCccccCCCCCCCeEEEEeCceEECHHHhcCCccch
Confidence 9988 99999999986432 34578999999999999999999999999994 99999999999999999999999
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C-
Q psy1215 147 FKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDN-K- 224 (260)
Q Consensus 147 ~~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~-~- 224 (260)
+......+..+|+.+++.++|+++++++.+++|+++|.+||+++.++|.+|++++++.++++++|++++.++..+|. +
T Consensus 269 ~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~g~ 348 (428)
T 2wbi_A 269 FEISQGRLGPGRIHHCMRTVGLAERALQIMCERATQRIAFKKKLYAHEVVAHWIAESRIAIEKIRLLTLKAAHSMDTLGS 348 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99888888999999999999999999999999999999999999999999999999999999999999999998876 2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 225 QPFTKEAAMAKLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 225 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
.+.....+++|.++++.+.++++.++|++||.||+
T Consensus 349 ~~~~~~~~~aK~~a~e~a~~v~~~a~q~~Gg~G~~ 383 (428)
T 2wbi_A 349 AGAKKEIAMIKVAAPRAVSKIVDWAIQVCGGAGVS 383 (428)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGGS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 34567789999999999999999999999999986
No 32
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Probab=100.00 E-value=4.5e-45 Score=322.01 Aligned_cols=259 Identities=21% Similarity=0.337 Sum_probs=232.1
Q ss_pred CHHHHHHHHHhcccCchhhhhhhc----CCCC--HHHHHHHHHcCCccccCcccc-------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDRE----HLYP--KEQIKKMGELGLMGVEVPEDL------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~~~~l~~~G~~~~~vp~~~------------------------- 49 (260)
++++.+++|+++.+.|...+.++. +.+| .++|++|++.||+++.+|++|
T Consensus 12 ~l~~~~r~f~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~v~eela~~~~~~~ 91 (439)
T 2c12_A 12 EARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLGGTMESLVHESIILEELFAVEPATS 91 (439)
T ss_dssp HHHHHHHHHHHHTGGGHHHHHTTCSSHHHHHHTTHHHHHHHHHTTTTGGGSBGGGTCCBCCHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHHHHHHHHhCChhHHHHhhcccccCCCCChHHHHHHHHHCCCCCCCCChhhCCCCCCHHHHHHHHHHHHhhChHHH
Confidence 378999999999998877666553 3565 899999999999999999998
Q ss_pred -----------------------------------------------c---------ccccEEEEeCCeEEEeeeeeeee
Q psy1215 50 -----------------------------------------------G---------AASTVAKQDSNGWTLNGTKAWIT 73 (260)
Q Consensus 50 -----------------------------------------------~---------~~~~~a~~~~~g~~l~G~k~~~s 73 (260)
. ++.|+|++++|||+|||+|.|+|
T Consensus 92 ~~~~~~~~~~~~l~~~g~~~q~~~~l~~~~~~~G~~~~~~a~tEp~~Gs~~~~sd~~~~~t~A~~~~~g~~lnG~K~~is 171 (439)
T 2c12_A 92 ITIVATALGLMPVILCDSPSLQEKFLKPFISGEGEPLASLMHSEPNGTANWLQKGGPGLQTTARKVGNEWVISGEKLWPS 171 (439)
T ss_dssp HHHHHHHHHHHHHHHSSCHHHHHHHTGGGGSSCSCCCEEEECCCTTCSTTTTCTTSCCCSCEEEEETTEEEEEEEEECCT
T ss_pred HHHHHhHHHHHHHHHhCCHHHHHHHHHHHhhcCCCEEEEEEecCCCCCCCccccccccceeEEEEcCCEEEEEeEEEeec
Confidence 0 12578999999999999999999
Q ss_pred CCC-----CCcEEEEEEEe-C----CC----CCCCceEEEEEeCCCC------CeeecccCCcccCCCCCeeeEEEecee
Q psy1215 74 NGY-----ESEATVVFATT-D----KS----KKHKGISAFIVDKPTK------GLSLGKKEDKLGINASSTCSLIFEDCS 133 (260)
Q Consensus 74 ~~~-----~a~~~~v~a~~-~----~~----~~~~~~~~~~v~~~~~------gv~~~~~~~~~G~~~~~~~~~~f~~v~ 133 (260)
|+. .||+++|++++ + ++ ++..++++|+||+++| |+++.++|+++|+++++++++.|+||+
T Consensus 172 ~~~~~~~~~Ad~~~v~ar~~~~~~~~~~~~~~~~~g~~~flV~~~~pGv~~~~Gv~v~~~~~~~G~r~~~~~~v~fddv~ 251 (439)
T 2c12_A 172 NSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFH 251 (439)
T ss_dssp TTTTTTSSCCSEEEEEEEECSCTTSCCCTTSCGGGGEEEEEECHHHHHTSCGGGEEEEECCCBSSCTTCCCCEEEEEEEE
T ss_pred CCCccccccCcEEEEEEEcCCcccCccccccCCCCceEEEEEECCCCcccCCCceEeCCcccccccCCCCceEEEEccEE
Confidence 997 89999999998 5 22 2345789999999999 788889999999999999999999999
Q ss_pred eCCCCccCCCCccHH-HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHhh-ccccCcccccchhHHHHHHHHHHHHHHHH
Q psy1215 134 IPAENLLGEPGMGFK-IAMMTLDAGRIGIASQALGIAQASLDCAVEYASK-RTAFGQPIIKLQSIQQKIADMSLKLESAR 211 (260)
Q Consensus 134 Vp~~~vl~~~~~g~~-~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~~~~~-r~~~g~~l~~~~~v~~~la~~~~~l~~~~ 211 (260)
||++++||.++.|+. .....+...|+.+++.++|+++++++.+++|+++ |.+||+++.++|.+|++|+++.++++++|
T Consensus 252 VP~~~~lg~~~~g~~~~~~~~l~~~r~~~aa~~~G~a~~al~~a~~ya~~rr~~~G~~i~~~q~vq~~la~~~~~~~aar 331 (439)
T 2c12_A 252 VPHENLLCTPGLKAQGLVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRLETSR 331 (439)
T ss_dssp EEGGGBCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSSCGGGSHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceeeCCeehhccHHHHHHHHHHHHHHHHHH
Confidence 999999999889998 8888889999999999999999999999999996 77889999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCc----hhHHHHHHHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 212 LLTWRAAYLKDNKQPF----TKEAAMAKLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 212 a~~~~~~~~~~~~~~~----~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
+++++++..++.+.+. ....+++|.++++.+.++++.++|++||.||.
T Consensus 332 ~~~~~aa~~~~~~~~~~~~~~~~~~~aK~~a~~~a~~v~~~a~q~~Gg~g~~ 383 (439)
T 2c12_A 332 LLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKAVGMKSYA 383 (439)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGB
T ss_pred HHHHHHHHHHhCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEc
Confidence 9999999999876542 23578999999999999999999999999986
No 33
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata}
Probab=100.00 E-value=5.6e-43 Score=308.69 Aligned_cols=253 Identities=23% Similarity=0.365 Sum_probs=215.6
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+. .+.|.+.+.|+++.+|.++|+.|++.||+++.+|++|
T Consensus 26 ~l~~~~r~~~~-~~~~~a~~~d~~~~~~~~~~~~l~~~Gl~~l~~P~~~GG~gl~~~~~~~~v~eel~~~~~~~~~~~~~ 104 (439)
T 3m9v_A 26 VLLDRLAAHLP-RIRSTAAEHDRDGTFPTDTFDALRKDGLMGATVPAELGGLGVDRLYDVAVALLAVARADASTALALHM 104 (439)
T ss_dssp HHHHHHHTTHH-HHHHHHHHHHHHTCCCHHHHHHHHHTTGGGTTSCGGGTSCCCCCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHhhhHHHHHhcCCCCHHHHHHHHHCCCccCCCChhhCCCCCCCHHHHHHHHHHHHhhChHHHHHHHH
Confidence 37888999995 6888889999999999999999999999999999987
Q ss_pred --------c-----c--------------------ccc-----------E-EEEeCCeEEEeeeeeeeeCCCCCcEEEEE
Q psy1215 50 --------G-----A--------------------AST-----------V-AKQDSNGWTLNGTKAWITNGYESEATVVF 84 (260)
Q Consensus 50 --------~-----~--------------------~~~-----------~-a~~~~~g~~l~G~k~~~s~~~~a~~~~v~ 84 (260)
. . ..+ . .+.++|||+|||+|.|+||+.+||+++|+
T Consensus 105 ~~~~~~~~~~~~~~gt~~q~~~k~~~l~~l~~g~~~~~~a~tEp~~~~~~~~t~~~~g~vlnG~K~~~s~a~~Ad~~~v~ 184 (439)
T 3m9v_A 105 QLSRGLTLGYEWRHGDERARTLAERILRGMVAGDAVVCSGIKDHHTAVTTLRPDGAGGWLLSGRKTLVSMAPVGTHFVIN 184 (439)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTCCCEEEECEECTTCCCEEEECSSSCEEEEEEEEEETTGGGCSEEEEC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEeecCCCCCCCceeeccCCEEEEEeEEEeecCccccCEEEEE
Confidence 0 0 000 0 12367899999999999999999999999
Q ss_pred EEeCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccC--CCCccHHHHHHHHhhHhHHHH
Q psy1215 85 ATTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLG--EPGMGFKIAMMTLDAGRIGIA 162 (260)
Q Consensus 85 a~~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~--~~~~g~~~~~~~~~~~r~~~~ 162 (260)
++++++++..++++|+||+++|||++.+.|+++|+++++++++.|+||+||++++|+ ..+.|+.........+|+.++
T Consensus 185 art~~~~~~~g~~~flVp~~~pGv~i~~~~~~~G~~~~~~~~v~fddv~VP~~~~lg~~~~g~g~~~~~~~~~~~r~~~a 264 (439)
T 3m9v_A 185 ARTDGTDGPPRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGARNDAVLAGQTVSSVSVL 264 (439)
T ss_dssp EEECC--CCCCEEEEEEETTCTTEEECCCCCCSSCTTSCCEEEEEEEEEECGGGEEECCC--CCCGGGHHHHHHHHGGGH
T ss_pred EEecCCCCCceeEEEEEECCCCCeEECCCcccCCcCCCCceeEEEeeeEcCHHHccCCCCCCchHHHHhhchHHHHHHHH
Confidence 999765455679999999999999999999999999999999999999999999998 666666544444566888999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhC---C---------CCchhH
Q psy1215 163 SQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDN---K---------QPFTKE 230 (260)
Q Consensus 163 a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~---~---------~~~~~~ 230 (260)
+.++|+++++++.+++|++. +++.++|.+|++|+++.++++++|+++++++...+. . ......
T Consensus 265 a~~~G~a~~al~~a~~~a~~-----r~i~~~~~vq~~la~~~~~~~aar~l~~~aa~~~d~~~~~~~~~~~~~~~~~~~~ 339 (439)
T 3m9v_A 265 GVYVGVAQAAYDTAVAALER-----RPEPPQAAALTLVAEIDSRLYALRATAGSALTAADALSADLSGDMDERGRQMMRH 339 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-----CSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcC-----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhhhHHHH
Confidence 99999999999999999984 578999999999999999999999999998877664 1 112245
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 231 AAMAKLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 231 ~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
.+++|+++++.+.++++.++|++||.||+
T Consensus 340 ~~~ak~~a~~~a~~v~~~a~q~~Gg~G~~ 368 (439)
T 3m9v_A 340 FQCAKLAVNRLAPEIVSDCLSLVGGASYT 368 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHhc
Confidence 67789999999999999999999999996
No 34
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea}
Probab=100.00 E-value=1.6e-43 Score=308.27 Aligned_cols=253 Identities=23% Similarity=0.305 Sum_probs=219.3
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|++ .+.|.+.+.|+++.+|.++|++|++.||+++.+|++|
T Consensus 15 ~~~~~~r~~~~-~~~~~a~~~d~~~~~p~~~~~~l~~~Gl~~~~~P~~~GG~g~~~~~~~~~~~eel~~~~~~~~~~~~~ 93 (395)
T 3mxl_A 15 TVVDLLAGVIP-RISAEAADRDRTGTFPVEAFEQFAKLGLMGATVPAELGGLGLTRLYDVATALMRLAEADASTALAWHV 93 (395)
T ss_dssp HHHHHHTTTHH-HHHHHHHHHHHHTCCCHHHHHHHHHHTGGGCSSCTTTTSCCCCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHhhchHHHhhhCCCCHHHHHHHHHCCCcCcCCChhhCCCCCcCHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 36888999996 5789899999999999999999999999999999987
Q ss_pred --------c-----c----------------------------cc---cEE-EEeCCeEEEeeeeeeeeCCCCCcEEEEE
Q psy1215 50 --------G-----A----------------------------AS---TVA-KQDSNGWTLNGTKAWITNGYESEATVVF 84 (260)
Q Consensus 50 --------~-----~----------------------------~~---~~a-~~~~~g~~l~G~k~~~s~~~~a~~~~v~ 84 (260)
. . +. ... +.++|||+|||+|.|+||+..||+++|+
T Consensus 94 ~~~~~~~~~~~~~~g~~~qk~~~~~~l~~~~~g~~~~~~a~tEp~~~~~~~~t~~~~g~~lnG~K~~is~a~~Ad~~~v~ 173 (395)
T 3mxl_A 94 QLSRGLTLTYEWQHGTPPVRAMAERLLRAMAEGEAAVCGALKDAPGVVTELHSDGAGGWLLSGRKVLVSMAPIATHFFVH 173 (395)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHTSCCEECCCSBCTTCCCEEEECSSSCEEEEEEEEEETTGGGCSEECCC
T ss_pred HHHHHHHHHHHhhcCCHHHHhHHHHHHHHHhcCCcEEEEEecCCCCCCCceEEecCCEEEEeeEEEEecCccccCEEEEE
Confidence 0 0 00 011 2367899999999999999999999999
Q ss_pred EEeCCCCCCCceEEEEEeCCCCCeeecccCCcccCCCCCeeeEEEeceeeCCCCccC--CCCccHHHHHHHHhhHhHHHH
Q psy1215 85 ATTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLG--EPGMGFKIAMMTLDAGRIGIA 162 (260)
Q Consensus 85 a~~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~~~~~~~~f~~v~Vp~~~vl~--~~~~g~~~~~~~~~~~r~~~~ 162 (260)
++++++++..++++|+||+++|||++.+.|+++|+++++++++.|+||+||++++|| .++.|+..........|+.++
T Consensus 174 a~~~~~~~~~g~~~flV~~~~pGv~v~~~~~~~G~r~~~~~~v~f~~v~Vp~~~~lg~~~~g~g~~~~~~~~~~~r~~~a 253 (395)
T 3mxl_A 174 AQRRDDDGSVFLAVPVVHRDAPGLTVLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGARRDAVLAGQTVSSITML 253 (395)
T ss_dssp EEEECTTSCEEEECCCEETTCTTEEEECCCCBSSCTTSCCEEEEEEEEEECGGGCCEEEESSCCCTTHHHHHHHHHGGGH
T ss_pred EEeCCCCCCCceEEEEEECCCCceEeCCCchhcCCCCCCcceEEEcceEcCHHHhcCCCCCCccHHHHHhhhHHHHHHHH
Confidence 999765455678999999999999999999999999999999999999999999998 667776555444666889999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CC-C-----chhH
Q psy1215 163 SQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDN------KQ-P-----FTKE 230 (260)
Q Consensus 163 a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~------~~-~-----~~~~ 230 (260)
++++|+++++++.+++|++ ++++.++|.+|++++++.++++++|+++++++...|. .. . ....
T Consensus 254 a~~~G~a~~al~~a~~~a~-----~r~i~~~q~vq~~la~~~~~~~aar~~~~~aa~~~d~~~~~~~~~~~~~~~~~~~~ 328 (395)
T 3mxl_A 254 GIYAGIAQAARDIAVGFCA-----GRGGEPRAGARALVAGLDTRLYALRTTVGAALTNADAASVDLSGDPDERGRRMMTP 328 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----TTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchhHHHH
Confidence 9999999999999999998 4578999999999999999999999999999988764 11 1 1245
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 231 AAMAKLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 231 ~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
.+++|.++++.+.++++.++|++||.||+
T Consensus 329 ~~~ak~~~~~~a~~~~~~a~q~~Gg~g~~ 357 (395)
T 3mxl_A 329 FQYAKMTVNELAPAVVDDCLSLVGGLAYT 357 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHhcc
Confidence 67899999999999999999999999996
No 35
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A*
Probab=100.00 E-value=1.9e-37 Score=278.08 Aligned_cols=198 Identities=24% Similarity=0.343 Sum_probs=186.3
Q ss_pred ccEEEEe-CCeEEEeeeeeeeeCCCCCcEEEEEEEeCCCCCCCceEEEEEeCCCC-----CeeecccCCcccCCCCCeee
Q psy1215 53 STVAKQD-SNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTK-----GLSLGKKEDKLGINASSTCS 126 (260)
Q Consensus 53 ~~~a~~~-~~g~~l~G~k~~~s~~~~a~~~~v~a~~~~~~~~~~~~~~~v~~~~~-----gv~~~~~~~~~G~~~~~~~~ 126 (260)
+|+|+++ +|+|+|||+|+|+| ++++|+++|+++++ +++++|+||++.| ||++.+.|+++|++++++++
T Consensus 197 ~T~A~~~~~g~y~LnG~K~f~S-a~~Ad~~lVlArt~-----~Gis~flVp~~~p~~~~~Gv~i~~~~~~~G~rgt~s~~ 270 (541)
T 3djl_A 197 TTRAERLEDGSYRLVGHKWFFS-VPQSDAHLVLAQTA-----GGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCE 270 (541)
T ss_dssp CCEEEECTTSCEEEEEEEEEEE-CTTSSEEEEEEEET-----TEEEEEEEESBCTTSCBCSEEEEEECCCSSCTTSCEEE
T ss_pred eeEEEEcCCCeEEEEEEEEeec-ccccCEEEEEEEEC-----CceEEEEEecCCCCCCcCCeEEeeccccCCCcCCceeE
Confidence 6899999 78999999999999 89999999999995 4799999999998 99999999999999999999
Q ss_pred EEEeceeeCCCCccCCCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHH
Q psy1215 127 LIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLK 206 (260)
Q Consensus 127 ~~f~~v~Vp~~~vl~~~~~g~~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~ 206 (260)
+.|+||+ +++||.++.|+..+...+..+|+.+++.++|+++++++.+++|+++|.+||+++.++|.+|++|+++.++
T Consensus 271 v~fddv~---~~llG~~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~ya~~R~~fG~~i~~~p~vq~~La~~~~~ 347 (541)
T 3djl_A 271 VEFQDAI---GWLLGLEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQPLMRHVLSRMALQ 347 (541)
T ss_dssp EEEEEEE---EEEESSTTCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHHHHHHH
T ss_pred EEEccce---eeeeecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccCCCchhhCHHHHHHHHHHHHH
Confidence 9999995 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCc------hhHHHHHHHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 207 LESARLLTWRAAYLKDNKQPF------TKEAAMAKLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 207 l~~~~a~~~~~~~~~~~~~~~------~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
++++++++++++..+|..... ...++++|.++++.+.++++.+++++||.||+
T Consensus 348 ~eaaral~~~aa~~~d~~~~~~~~~~~~~~~~~aK~~ase~a~~~~~~a~q~~Gg~G~~ 406 (541)
T 3djl_A 348 LEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGMPFVAEAMEVLGGIGYC 406 (541)
T ss_dssp HHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGS
T ss_pred HHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeeec
Confidence 999999999999999886432 34578999999999999999999999999996
No 36
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Probab=100.00 E-value=1.1e-37 Score=286.04 Aligned_cols=257 Identities=17% Similarity=0.178 Sum_probs=213.5
Q ss_pred CHHHHHHHHHhcccCchhhhhhhcCCCCHHHHHHHHHcCCccccCcccc-------------------------------
Q psy1215 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDL------------------------------- 49 (260)
Q Consensus 1 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~vp~~~------------------------------- 49 (260)
++++.+++|+++.-.. ....+....++++.|+.|++.|++.. +|++|
T Consensus 33 ~lr~~vr~~l~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~l~~-~p~e~G~~~~~~~~v~e~~~~~~~~~~~~~l~~~~l 110 (659)
T 1w07_A 33 EVSDRIARLVASDPVF-EKSNRARLSRKELFKSTLRKCAHAFK-RIIELRLNEEEAGRLRHFIDQPAYVDLHWGMFVPAI 110 (659)
T ss_dssp HHHHHHHHHHHTCGGG-CCTTTTSSCHHHHHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHHHCCCCHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHhcCccc-ccCCccCCChHHHHHHHHHHHHHHHH-hHHHhCCCchHHHHHHHHhccchhhhhHHhHHHHHH
Confidence 3688899998655221 11112223567889999998877764 55543
Q ss_pred ------------------------------------cccccEEEEe--CCeEEEe-----eeeeeeeC-CCCCcEEEEEE
Q psy1215 50 ------------------------------------GAASTVAKQD--SNGWTLN-----GTKAWITN-GYESEATVVFA 85 (260)
Q Consensus 50 ------------------------------------~~~~~~a~~~--~~g~~l~-----G~k~~~s~-~~~a~~~~v~a 85 (260)
.+++|+|+++ +|||+|| |+|.|+|| +..||+++|++
T Consensus 111 ~~~Gt~eqk~~~L~~i~~Ge~~~~~a~TEp~~GSd~~~l~TtA~~d~~~~g~vLntP~~~G~K~~is~~a~~Ad~~lV~A 190 (659)
T 1w07_A 111 KGQGTEEQQKKWLSLANKMQIIGCYAQTELGHGSNVQGLETTATLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYA 190 (659)
T ss_dssp HHHSCHHHHHHHHHHHHTTSSCEEEECCBTTBSSCGGGCCCEEEEETTTTEEEEECCSGGGSEECCTTTTTTCSEEEEEE
T ss_pred HHcCCHHHHHHHhhHHhcCCEEEEEEecCCCCCCCcccceeEEEEcCCCCEEEEcCCCCCeEEEeecCCCCCCCEEEEEE
Confidence 3467899998 6899999 99999999 89999999999
Q ss_pred EeCCCCCCCceEEEEEeC-C------CCCeeecccCCccc---CCCCCeeeEEEeceeeCCCCccCC------CCccH--
Q psy1215 86 TTDKSKKHKGISAFIVDK-P------TKGLSLGKKEDKLG---INASSTCSLIFEDCSIPAENLLGE------PGMGF-- 147 (260)
Q Consensus 86 ~~~~~~~~~~~~~~~v~~-~------~~gv~~~~~~~~~G---~~~~~~~~~~f~~v~Vp~~~vl~~------~~~g~-- 147 (260)
+++++++..++++|+||. + .|||++.+.|+++| +++++++.+.|+||+||.+++|+. .+.++
T Consensus 191 r~~~~~~~~G~~~flVp~r~~~~~~~~pGV~v~~~~~~~G~~~~~g~~~~~v~fd~VrVP~~~lLg~~~~v~~~g~~~~~ 270 (659)
T 1w07_A 191 RLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPS 270 (659)
T ss_dssp EEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECCCBSSSSGGGGSCCEEEEESSEEEEGGGBCCSSEEECTTCCEEEC
T ss_pred EECCCCCCCCeEEEEEEccccCCCCCCCCeEEecCccCccccccCCCCceEEEeccEEECHHHhcCCcCccCCCCceecC
Confidence 986433345789999995 5 69999999999999 999999999999999999999985 55543
Q ss_pred ----HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCc-------ccccchhHHHHHHHHHHHHHHHHHHHHH
Q psy1215 148 ----KIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQ-------PIIKLQSIQQKIADMSLKLESARLLTWR 216 (260)
Q Consensus 148 ----~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~~~~~r~~~g~-------~l~~~~~v~~~la~~~~~l~~~~a~~~~ 216 (260)
...+..+..+|+.+++.++|+++++++.+++|++.|.+||+ ++.++|.+|++++++.+++++++++++.
T Consensus 271 ~~~~~~~~~~l~~~R~~~aa~~~G~a~~al~~a~~ya~~R~qfg~~~~~~e~pi~~~q~vq~rLa~~~a~~~a~~~~~~~ 350 (659)
T 1w07_A 271 DVPKQLVYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRLFPLLASAYAFRFVGEW 350 (659)
T ss_dssp SSCGGGCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCBCSCC---CCCCBGGGSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCCCcccchhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445678899999999999999999999999999999997 8999999999999999999999999999
Q ss_pred HHHHHh-------CCCC-----chhHHHHHHHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 217 AAYLKD-------NKQP-----FTKEAAMAKLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 217 ~~~~~~-------~~~~-----~~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
++..++ .+.+ ....++++|.++++.+.++++.|+|+|||.||.
T Consensus 351 aa~~~~~~~~~~~~g~~~~~~~~~~~~a~aK~~at~~a~~~~~~a~q~~GG~G~~ 405 (659)
T 1w07_A 351 LKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEECRKLCGGHGYL 405 (659)
T ss_dssp HHHHHHHHHHHTTTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGGB
T ss_pred HHHHHHHHHHhhhcCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 887653 3332 246778999999999999999999999999996
No 37
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Probab=100.00 E-value=7.1e-35 Score=267.15 Aligned_cols=210 Identities=20% Similarity=0.166 Sum_probs=181.3
Q ss_pred cccccEEEEe--CCeEEEe-----eeeeeeeC-CCCCcEEEEEEEeCCCCCCCceEEEEEeC-C------CCCeeecccC
Q psy1215 50 GAASTVAKQD--SNGWTLN-----GTKAWITN-GYESEATVVFATTDKSKKHKGISAFIVDK-P------TKGLSLGKKE 114 (260)
Q Consensus 50 ~~~~~~a~~~--~~g~~l~-----G~k~~~s~-~~~a~~~~v~a~~~~~~~~~~~~~~~v~~-~------~~gv~~~~~~ 114 (260)
.+++|+|+++ +|||+|| |+|.|+|| +..||+++|+++++++++..++++|+||. + .|||++.+.|
T Consensus 148 ~~l~TtA~~d~~~~~~vLntP~~~G~K~wis~~a~~Ad~~vV~Ar~~~~~~~~G~~~FlVp~rd~~~~~~~pGV~v~~~~ 227 (661)
T 2ddh_A 148 RGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGDIG 227 (661)
T ss_dssp GGCCCEEEEETTTTEEEEECCSSTTSEECCTTTTTTCSEEEEEEEEEETTEEEEEEEEEEECBCTTTCCBCTTEEEEECC
T ss_pred ccceeEEEEcCCCCeEEEcCCCCCeEEEecCCCcccCCEEEEEEEEccCCCCCceEEEEEecccccCCCCCCCeEEecCc
Confidence 3568999998 7899999 99999999 78999999999986433345789999994 4 7999999999
Q ss_pred CcccCCCCCeeeEEEeceeeCCCCccCCC------Ccc-----HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy1215 115 DKLGINASSTCSLIFEDCSIPAENLLGEP------GMG-----FKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKR 183 (260)
Q Consensus 115 ~~~G~~~~~~~~~~f~~v~Vp~~~vl~~~------~~g-----~~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~~~~~r 183 (260)
+++|+++++++++.|+||+||.+++|+.. +.+ +......+..+|+.+++.++|+++++++.+++|++.|
T Consensus 228 ~k~Gl~g~~~~~v~Fd~VrVP~~~lLg~~~~v~~~G~~~~~~~~~~~~~~l~~~R~~iaa~~~G~a~~al~~a~~ya~~R 307 (661)
T 2ddh_A 228 PKFGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTYVKPLSNKLTYGTMVFVRSFLVGNAAQSLSKACTIAIRYSAVR 307 (661)
T ss_dssp CCSSCTTCCCEEEEESSEEEEGGGBCCSSCEECTTCCEECCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccCCCCcceEEEeccEEECHHHhcCcccccCCCCceeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999874 333 5566677789999999999999999999999999999
Q ss_pred cccCc-------ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCC-----chhHHHHHHHHHHHHHHH
Q psy1215 184 TAFGQ-------PIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDN-------KQP-----FTKEAAMAKLAASETATY 244 (260)
Q Consensus 184 ~~~g~-------~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~-------~~~-----~~~~~~~~k~~~~~~~~~ 244 (260)
.+||+ ++.++|.+|++|+++.+.+++++++++.++..++. +.+ ....++++|.++++.+.+
T Consensus 308 ~qfg~~~~~~e~~i~~~q~vq~rLa~~~a~~~aar~~~~~aa~~~~~~~~~~~~g~~~~~~~~~~~aa~aK~~at~~a~~ 387 (661)
T 2ddh_A 308 RQSEIKQSEPEPQILDFQTQQYKLFPLLATAYAFHFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANA 387 (661)
T ss_dssp BCSCSSTTSCCCBGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhhHHHHHHHHHHHHHHHHHH
Confidence 99997 89999999999999999999999999999988753 221 245678999999999999
Q ss_pred HHHHHHHccCCCCcC
Q psy1215 245 NAHQAIQIPIITKYL 259 (260)
Q Consensus 245 ~~~~~~~~~Gg~g~~ 259 (260)
+++.|+++|||.||+
T Consensus 388 ~~~~a~q~~GG~G~~ 402 (661)
T 2ddh_A 388 GIEECRMACGGHGYS 402 (661)
T ss_dssp HHHHHHHHTTHHHHS
T ss_pred HHHHHHHHhCccccc
Confidence 999999999999985
No 38
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Probab=100.00 E-value=5.5e-33 Score=246.06 Aligned_cols=202 Identities=19% Similarity=0.131 Sum_probs=169.0
Q ss_pred cccEEE-EeCCeEEEeeeeeeeeCCCCCcEEEEEEEeCCC-CCCCceEEEEEeCCCCCeeec--ccCC--------cccC
Q psy1215 52 ASTVAK-QDSNGWTLNGTKAWITNGYESEATVVFATTDKS-KKHKGISAFIVDKPTKGLSLG--KKED--------KLGI 119 (260)
Q Consensus 52 ~~~~a~-~~~~g~~l~G~k~~~s~~~~a~~~~v~a~~~~~-~~~~~~~~~~v~~~~~gv~~~--~~~~--------~~G~ 119 (260)
+.++++ +++|||+|||+|.|+|| +.||+++|++++++. ++.++.++|+||+++|||++. +.+. ++|+
T Consensus 163 ~~~~~~~~~gdg~VlnG~K~~iT~-~~Ad~~iV~art~~~~~~~~~~s~flVp~dtpGv~v~~r~~~~~~~s~~d~~lg~ 241 (481)
T 2yyk_A 163 IPVGVVKQTEKGIVVRGARMTATF-PLADEVLIFPSILLQAGSEKYALAFALPTSTPGLHFVCREALVGGDSPFDHPLSS 241 (481)
T ss_dssp SBCEEEEECSSEEEEEEEEEEEEC-CCSSEEEECCCSCCCTTCGGGCEEEEEETTCTTEEEEECCCCCCCSCTTTCTTTT
T ss_pred cceEEEEEECCEEEEEeEEEEecc-ccccEEEEEEecCCCCCCCCeEEEEEEECCCCCEEEEeccccccCCccccccccc
Confidence 345654 68999999999999999 999999999998642 233468999999999999994 3332 2566
Q ss_pred CC-CCeeeEEEeceeeCCCCcc--CCCCccHHHH--HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccch
Q psy1215 120 NA-SSTCSLIFEDCSIPAENLL--GEPGMGFKIA--MMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQ 194 (260)
Q Consensus 120 ~~-~~~~~~~f~~v~Vp~~~vl--~~~~~g~~~~--~~~~~~~r~~~~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~ 194 (260)
+. .++++|.||||+||++++| |..+.|+... ...+...|+..++..+|.++.++..+..++.. +| +.++|
T Consensus 242 r~~~~~~~v~FddV~VP~e~vl~~G~~~~g~~~~~~~~~l~~~r~~~~~~~~g~a~~~lg~a~~~~~~---~g--i~~~q 316 (481)
T 2yyk_A 242 RVEEMDCLVIFDDVLVPWERVFILGNVELCNNAYGATGALNHMAHQVVALKTAKTEAFLGVAALMAEG---IG--ADVYG 316 (481)
T ss_dssp TCCCCEEEEEEEEEEEEGGGEEEESCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TT--GGGSH
T ss_pred cCCCCeEEEEEccEEECHHHccCCCCccHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHh---cC--hhhhH
Confidence 64 7889999999999999998 5555555443 45678899999999999999999999888764 33 89999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CC--CchhHHHHHHHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 195 SIQQKIADMSLKLESARLLTWRAAYLKDN---KQ--PFTKEAAMAKLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 195 ~v~~~la~~~~~l~~~~a~~~~~~~~~~~---~~--~~~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
.||++||++.++++++|++++++++..|. +. +...+++++|+++++.+.++++.++|++||.++.
T Consensus 317 ~vq~~laem~~~leaar~l~~~aa~~~d~~~~G~~~~~~~~~s~aK~~a~e~a~~v~~~a~qi~Gg~g~~ 386 (481)
T 2yyk_A 317 HVQEKIAEIIVYLEAMRAFWTRAEEEAKENAYGLLVPDRGALDGARNLYPRLYPRIREILEQIGASGLIT 386 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCEECTTSCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 99999999999999999999999998864 32 4466899999999999999999999999997764
No 39
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Probab=100.00 E-value=5e-32 Score=240.23 Aligned_cols=200 Identities=15% Similarity=0.116 Sum_probs=164.6
Q ss_pred EEEEeCCeEEEeeeeeeeeCCCCCcEEEEEEEeCCC-CCCCceEEEEEeCCCCCeeec---ccCCc----------ccC-
Q psy1215 55 VAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKS-KKHKGISAFIVDKPTKGLSLG---KKEDK----------LGI- 119 (260)
Q Consensus 55 ~a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~~~~~-~~~~~~~~~~v~~~~~gv~~~---~~~~~----------~G~- 119 (260)
++++++|||+|||+|.|+||++.||+++|+++++.. ++.++.++|+||+++|||++. +.+.. +|+
T Consensus 172 ~a~r~gdg~vlnG~K~~iT~a~~Ad~~iV~art~~~~~~~~~~s~flVp~d~pGv~v~~~r~~~~~~~~~~~~d~~lg~~ 251 (490)
T 1u8v_A 172 IVEKREDGIVVRGAKAHQTGSINSHEHIIMPTIAMTEADKDYAVSFACPSDADGLFMIYGRQSCDTRKMEEGADIDLGNK 251 (490)
T ss_dssp EEEECSSEEEEEEEECSCTTCTTCSEEEECCSSCCCGGGGGGCEEEEEETTCTTEEEEECCCTTGGGGGSTTCCGGGSSS
T ss_pred EEEEECCEEEEEeEEEEeeCCcccCEEEEEEecCCCCCCCCeEEEEEEECCCCCEEEEecccccccccccccccCCcccc
Confidence 788899999999999999999999999999998632 223458899999999999994 33433 676
Q ss_pred CC-CCeeeEEEeceeeCCCCcc--CCCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccchhH
Q psy1215 120 NA-SSTCSLIFEDCSIPAENLL--GEPGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSI 196 (260)
Q Consensus 120 ~~-~~~~~~~f~~v~Vp~~~vl--~~~~~g~~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v 196 (260)
+. .++++|.||||+||++++| |..+.|+......+...|+..+++++|.++.++..+...... +| +.++|.|
T Consensus 252 r~~~~~~~v~FddV~VP~e~vl~~g~~~~g~~~~~~~~~~~r~~~~a~~~~~~~~~lG~a~~~~~~---~g--i~~~q~v 326 (490)
T 1u8v_A 252 QFGGQEALVVFDNVFIPNDRIFLCQEYDFAGMMVERFAGYHRQSYGGCKVGVGDVVIGAAALAADY---NG--AQKASHV 326 (490)
T ss_dssp SCCCCCEEEEEEEEEEEGGGEEEESCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HT--CTTCHHH
T ss_pred ccCCceEEEEECceEeCHHHccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cC--chhcHHH
Confidence 63 6789999999999999998 666777777666777888877777767666666666554432 33 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC---CC--CchhHHHHHHHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 197 QQKIADMSLKLESARLLTWRAAYLKDN---KQ--PFTKEAAMAKLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 197 ~~~la~~~~~l~~~~a~~~~~~~~~~~---~~--~~~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
|++||++..+++++|++++++++.+|. +. +....++++|+++++.+.++++.++|++||.||.
T Consensus 327 q~~laem~~~leaar~l~~~aa~~~d~~~~g~~~~~~~~~s~aK~~a~e~a~~v~~~a~qi~Gg~g~~ 394 (490)
T 1u8v_A 327 KDKLIEMTHLNETLYCCGIACSAEGYPTAAGNYQIDLLLANVCKQNITRFPYEIVRLAEDIAGGLMVT 394 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCEECTTSCEECCHHHHHHHHHHHTTHHHHHHHHHHHHHCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccccCCcCccHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhc
Confidence 999999999999999999999998864 32 4456889999999999999999999999998763
No 40
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Probab=99.97 E-value=8.1e-31 Score=232.23 Aligned_cols=199 Identities=12% Similarity=0.074 Sum_probs=155.6
Q ss_pred EEeCCeEEEeeeeeeeeCCCCCcEEEEEEEeCCCCCCCceEEEEEeCCCCCeeecccCCcccC-----CC-----CCeee
Q psy1215 57 KQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGI-----NA-----SSTCS 126 (260)
Q Consensus 57 ~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~-----~~-----~~~~~ 126 (260)
.+++|||+|||+|.|+||+..||+++|++++++..+...+++|+||+++|||++...|..+|. +. ..+++
T Consensus 176 ~~~gdg~VlnG~K~~iT~a~~Ad~~lV~a~t~~~~~~~~~s~FlVp~d~pGv~v~~~~~~~G~~~~d~~ls~~~~~~~a~ 255 (515)
T 3hwc_A 176 EKTDDGIIVNGVKAVGTGIAFGDYMHIGCLYRPGIPGEQVIFAAIPTNTPGVTVFCRESTVKNDPAEHPLASQGDELDST 255 (515)
T ss_dssp EECSSEEEEEEEEEEEESGGGCSEEEECCCCCTTCCGGGCEEEEEETTCTTEEEEECCCCCCSCTTTCTTTTSCCCCEEE
T ss_pred EEECCEEEEEEEEEEECCccccCEEEEEEEecCCCCCCeEEEEEEECCCCCeEEeecccccCccccccccccccCCceEE
Confidence 346889999999999999999999999998833212223899999999999999777776663 22 24889
Q ss_pred EEEeceeeCCCCcc--CCCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHH
Q psy1215 127 LIFEDCSIPAENLL--GEPGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMS 204 (260)
Q Consensus 127 ~~f~~v~Vp~~~vl--~~~~~g~~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~ 204 (260)
+.||||+||++++| |..+.|+......+...+.....+.+|.+..++..+...+.. +| |.++|.||++||++.
T Consensus 256 v~FddV~VP~e~vl~~Ge~g~g~~~~~~~~~~~~r~~~~~~~~~a~~~lG~A~~~~e~---~g--I~~fQ~Vq~kLAem~ 330 (515)
T 3hwc_A 256 TVFDNVFIPWEQVFHIGNPEHAKLYPQRIFDWVHYHILIRQVLRAELIVGLAILITEH---IG--TSKLPTVSARVAKLV 330 (515)
T ss_dssp EEEEEEEEEGGGEEEESCTTGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HT--CTTSHHHHHHHHHHH
T ss_pred EEECceEECHHHccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cC--CcccHHHHHHHHHHH
Confidence 99999999999999 788888766543343332222234455555555555444432 33 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhC---CC--CchhHHHHHHHHHHHHHHHHHHHHHHccCCCCcCC
Q psy1215 205 LKLESARLLTWRAAYLKDN---KQ--PFTKEAAMAKLAASETATYNAHQAIQIPIITKYLL 260 (260)
Q Consensus 205 ~~l~~~~a~~~~~~~~~~~---~~--~~~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~~ 260 (260)
++++++|++++.++...+. +. +....++++|+++++.+.++++.++|++||.++++
T Consensus 331 ~~lEaaR~l~~~Aa~~~d~~~~G~~~p~~~~as~AK~~ase~~~rv~~~a~qi~GG~~i~~ 391 (515)
T 3hwc_A 331 AFHLAMQAHLIASEETGFHTKGGRYKPNPLIYDFGRAHFLQNQMSVMYELLDLAGRSSLMI 391 (515)
T ss_dssp HHHHHHHHHHHHHHHTCEECTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTSC
T ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeC
Confidence 9999999999999998774 32 55678899999999999999999999999988763
No 41
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134}
Probab=99.97 E-value=2.2e-30 Score=229.75 Aligned_cols=200 Identities=12% Similarity=0.039 Sum_probs=167.8
Q ss_pred EEEeCCeEEEeeeeeeeeCCCCCcEEEEEEEeCCCCCCCceEEEEEeCCCCCeeecccCCcccCCC---------C-Cee
Q psy1215 56 AKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINA---------S-STC 125 (260)
Q Consensus 56 a~~~~~g~~l~G~k~~~s~~~~a~~~~v~a~~~~~~~~~~~~~~~v~~~~~gv~~~~~~~~~G~~~---------~-~~~ 125 (260)
..++++||+|||.|.|+||++.||+++|++++.+..+.++.++|+||.++|||++.......+.+. . ..+
T Consensus 176 ve~~~dGiVVnGaK~~~T~a~~Ad~i~V~a~t~~~~~~d~~~~F~VP~dtPGv~~i~r~~~~~~~~~d~pl~~r~~e~da 255 (517)
T 4g5e_A 176 IEKNDKGIVVSGVKAIGTGVAFADWIHIGVFFRPGIPGDQIIFAATPVNTPGVTIVCRESVVKEDPIEHPLASQGDELDG 255 (517)
T ss_dssp EEECSSEEEEEEEEEEEESGGGCSEEEECCCCCTTCCGGGCEEEEEETTCTTEEEEECCCCCCSCTTTCTTGGGCCCCEE
T ss_pred EEEcCCeEEEeeEehhhcCccccCEEEEEeecCCCCCccceEEEEEecCCCCeEEEecccccCCCccccccccccCCcce
Confidence 455688999999999999999999999999987655666788999999999999854444333322 2 347
Q ss_pred eEEEeceeeCCCCcc--CCCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHhhccccCcccccchhHHHHHHHH
Q psy1215 126 SLIFEDCSIPAENLL--GEPGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADM 203 (260)
Q Consensus 126 ~~~f~~v~Vp~~~vl--~~~~~g~~~~~~~~~~~r~~~~a~~~G~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~ 203 (260)
.++||||+||+|+|+ |..+.++......+...+...+++.+|.++.++..+..++... | +.++|.||++|++|
T Consensus 256 ~vvFDdV~VP~e~Vf~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~ae~~---G--i~~fq~Vq~kLaEm 330 (517)
T 4g5e_A 256 MTVFDNVFIPWSHVFHLGNPEHAKLYPQRVFDWLHYHALIRQSVRAELMAGLAILITEHI---G--TNKIPAVQTRVAKL 330 (517)
T ss_dssp EEEEEEEEEEGGGEEEESCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---T--CTTSHHHHHHHHHH
T ss_pred EEEecceeccHHHccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---C--CcccHHHHHHHHHH
Confidence 899999999999987 7777777777777888888888899999999999888888643 3 78999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhC---C--CCchhHHHHHHHHHHHHHHHHHHHHHHccCCCCcCC
Q psy1215 204 SLKLESARLLTWRAAYLKDN---K--QPFTKEAAMAKLAASETATYNAHQAIQIPIITKYLL 260 (260)
Q Consensus 204 ~~~l~~~~a~~~~~~~~~~~---~--~~~~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~~ 260 (260)
...+++++++++.++..... + .+....++++|+++++.+.+++++++|++||.|+++
T Consensus 331 ~~~~E~~ral~~aaa~~a~~~~~G~~~P~~~~a~~aK~~a~~~~~rv~~eaiqi~GG~g~~~ 392 (517)
T 4g5e_A 331 IGFHQAMLAHIVASEELGFHTPGGAYKPNILIYDFGRALYLENFSQMIYELVDLSGRSALIF 392 (517)
T ss_dssp HHHHHHHHHHHHHHHHTCEECTTCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCC
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC
Confidence 99999999999988765432 2 256778899999999999999999999999999874
No 42
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis}
Probab=93.61 E-value=0.71 Score=41.74 Aligned_cols=83 Identities=16% Similarity=0.071 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhhccccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC-CchhHHHHHHHHHHHHHHHH
Q psy1215 168 IAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDN-KQ-PFTKEAAMAKLAASETATYN 245 (260)
Q Consensus 168 ~~~~~l~~~~~~~~~r~~~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~-~~-~~~~~~~~~k~~~~~~~~~~ 245 (260)
.+...+..+.+++.. .+|+.+.+.|.+..+++++.++++++.+.+.++.+.... +. ....+..+++.||.+...++
T Consensus 466 ~~~~~~~~~~~~~~~--~~~~~~~~~q~~l~~~ad~~~~~y~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (597)
T 3owa_A 466 NAKKIGLMVAGLAAQ--KYGKALDKEQEILVNIADIVSNLYAMESAVLRTEKAIKTTGLEKNKQKVLYTEVFCQEAFNEI 543 (597)
T ss_dssp HHHHHHHHHHHHHHH--HHGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccchHHHHHHHHHHHHHHHHHH
Confidence 333334444444433 356789999999999999999999999999999988764 54 44678899999999988888
Q ss_pred HHHHHHc
Q psy1215 246 AHQAIQI 252 (260)
Q Consensus 246 ~~~~~~~ 252 (260)
-..+.++
T Consensus 544 ~~~~~~~ 550 (597)
T 3owa_A 544 EAHAKET 550 (597)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7765544
No 43
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A*
Probab=85.10 E-value=8.2 Score=34.85 Aligned_cols=70 Identities=17% Similarity=0.127 Sum_probs=56.8
Q ss_pred cCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHccCC
Q psy1215 186 FGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPF-TKEAAMAKLAASETATYNAHQAIQIPII 255 (260)
Q Consensus 186 ~g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~Gg 255 (260)
.|..+.+.+.+..+|+++..+++++.+.+.++.+..+.+.+. ..+..++++|+.+...++...+.++..+
T Consensus 506 ~~~~~~~~~~~~~rl~d~~~~~y~~~~~l~r~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 576 (607)
T 2uxw_A 506 HKKGIVNEQFLLQRLADGAIDLYAMVVVLSRASRSLSEGHPTAQHEKMLCDTWCIEAAARIREGMAALQSD 576 (607)
T ss_dssp HGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467788999999999999999999999999988776655443 4568889999998888887777666544
No 44
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus}
Probab=58.95 E-value=98 Score=27.50 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=47.3
Q ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy1215 187 GQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYNAHQAIQ 251 (260)
Q Consensus 187 g~~l~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~ 251 (260)
+..+.+.+.+..+++++..+++.+++.+.++.+. .+. ...+++.++.+...++...+.+
T Consensus 469 ~~~l~~~q~~l~~lad~~~~~~~~~~~l~r~~~~--~~~----~~~l~~~~~~~~~~~~~~~~~~ 527 (577)
T 2z1q_A 469 GQGVEEEQEVLGAVADILIDAYAAESALLRARRL--GGL----APVLARIYLAQALDRAQAGALS 527 (577)
T ss_dssp GGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHH--CTT----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCc----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677899999999999999999999888766 221 7788999999888887777433
No 45
>3rf3_A Vinculin, metavinculin; alpha-helix bundle domain, cytoskeletal protein, protein-Pro interactions, cell adhesion, cytoskeleton; 1.61A {Homo sapiens} PDB: 4dj9_A 1rke_A 1rkc_A 1syq_A 1ydi_A 2gww_A 2hsq_A 2ibf_A 3tj6_A 2gdc_A 4e17_A 4e18_A 3tj5_A 1u6h_A 1xwj_A 1zvz_A 1zw2_A 1zw3_A 3s90_A 4ehp_A ...
Probab=39.13 E-value=1.4e+02 Score=23.51 Aligned_cols=69 Identities=10% Similarity=0.017 Sum_probs=55.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCchhHHHHHHHHHHHHHHHHHHHHHHccCCCCcC
Q psy1215 191 IKLQSIQQKIADMSLKLESARLLTWRAAYLKDNK----QPFTKEAAMAKLAASETATYNAHQAIQIPIITKYL 259 (260)
Q Consensus 191 ~~~~~v~~~la~~~~~l~~~~a~~~~~~~~~~~~----~~~~~~~~~~k~~~~~~~~~~~~~~~~~~Gg~g~~ 259 (260)
..++..|++|+.+...|.-+-.+++.+....-.+ .+....+...|-|+.....++++....+.=+.+|-
T Consensus 182 L~~~~~r~~l~~Ar~~Lk~~~p~L~ta~k~~lrh~~~~~~~~~~a~~nRd~v~~~m~~al~~I~~vlq~~~~~ 254 (258)
T 3rf3_A 182 LTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSKNQGIEEALKNRNFTVEKMSAEINEIIRVLQLTSWD 254 (258)
T ss_dssp BSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCcHHHHHhHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 5577889999999999999999998888755332 25556777889999999999999988888777663
No 46
>3jsb_A Protein L, RNA-directed RNA polymerase; viral protein, vizier, structural genomics, marseilles struc genomics program @ AFMB; 2.13A {Lymphocytic choriomeningitis virus}
Probab=20.16 E-value=53 Score=24.46 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=22.1
Q ss_pred HHHHHcCCccccCcccccccccEEEEeCCeEEEeeee
Q psy1215 33 KKMGELGLMGVEVPEDLGAASTVAKQDSNGWTLNGTK 69 (260)
Q Consensus 33 ~~l~~~G~~~~~vp~~~~~~~~~a~~~~~g~~l~G~k 69 (260)
.-|.+.|+.+.++|. ...|||.++|.-
T Consensus 78 ~IL~d~gIv~PtLP~----------VvPDGykl~G~~ 104 (204)
T 3jsb_A 78 TILVESGIVCPGLPL----------IIPDGYKLIDNS 104 (204)
T ss_dssp HHHHTTTCCCCSCCC----------CCCSEEEEETTE
T ss_pred HHHHhcCccCCCCcc----------ccCCcceeeCCE
Confidence 347788888888888 678999999875
Done!