RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1215
(260 letters)
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid
metabolism, FAD, polymorphism, flavoprotein,
mitochondrion, disease mutation; HET: FAD COS; 1.9A
{Homo sapiens} PDB: 1jqi_A*
Length = 391
Score = 364 bits (936), Expect = e-127
Identities = 147/205 (71%), Positives = 169/205 (82%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKG 107
D GAAST A+ + + W LNGTKAWITN +E+ A VVFA+TD++ ++K ISAF+V PT G
Sbjct: 134 DAGAASTTARAEGDSWVLNGTKAWITNAWEASAAVVFASTDRALQNKSISAFLVPMPTPG 193
Query: 108 LSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALG 167
L+LGKKEDKLGI SST +LIFEDC IP +++LGEPGMGFKIAM TLD GRIGIASQALG
Sbjct: 194 LTLGKKEDKLGIRGSSTANLIFEDCRIPKDSILGEPGMGFKIAMQTLDMGRIGIASQALG 253
Query: 168 IAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPF 227
IAQ +LDCAV YA R AFG P+ KLQ IQ K+ADM+L LESARLLTWRAA LKDNK+PF
Sbjct: 254 IAQTALDCAVNYAENRMAFGAPLTKLQVIQFKLADMALALESARLLTWRAAMLKDNKKPF 313
Query: 228 TKEAAMAKLAASETATYNAHQAIQI 252
KEAAMAKLAASE AT +HQAIQI
Sbjct: 314 IKEAAMAKLAASEAATAISHQAIQI 338
Score = 81.0 bits (201), Expect = 7e-18
Identities = 32/52 (61%), Positives = 42/52 (80%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAA 52
ML +T RDF E EL PIAA++D+EHL+P Q+KKMG LGL+ ++VPE+LG A
Sbjct: 12 MLLQTCRDFAEKELFPIAAQVDKEHLFPAAQVKKMGGLGLLAMDVPEELGGA 63
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion,
oxidoreductase, transit peptide, fatty acid metabolism,
FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Length = 404
Score = 362 bits (931), Expect = e-126
Identities = 87/205 (42%), Positives = 132/205 (64%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKG 107
D A T A ++ + + LNG+K WI++ + +V A D + +KGI++F+VD+ T G
Sbjct: 156 DSFALKTRADKEGDYYVLNGSKMWISSAEHAGLFLVMANVDPTIGYKGITSFLVDRDTPG 215
Query: 108 LSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALG 167
L +GK E+KLG+ ASSTC L FE+ +P N+LG+ G G+K A+ +L+ GRIGIA+Q LG
Sbjct: 216 LHIGKPENKLGLRASSTCPLTFENVKVPEANILGQIGHGYKYAIGSLNEGRIGIAAQMLG 275
Query: 168 IAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPF 227
+AQ D + Y +R FG+ + Q +Q ++A ++ +LE+ARLLT+ AA L + +PF
Sbjct: 276 LAQGCFDYTIPYIKERIQFGKRLFDFQGLQHQVAHVATQLEAARLLTYNAARLLEAGKPF 335
Query: 228 TKEAAMAKLAASETATYNAHQAIQI 252
KEA+MAK ASE A + I+
Sbjct: 336 IKEASMAKYYASEIAGQTTSKCIEW 360
Score = 81.0 bits (201), Expect = 8e-18
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAA 52
M+ +V+ F + ++ P+ + +D K I+ + + GLMG+EV + G
Sbjct: 35 MIKSSVKKFAQEQIAPLVSTMDENSKMEKSVIQGLFQQGLMGIEVDPEYGGT 86
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain
acyl-COA dehydrogenase, flavoprotein, oxidoreductase;
HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP:
a.29.3.1 e.6.1.1
Length = 383
Score = 357 bits (918), Expect = e-124
Identities = 108/206 (52%), Positives = 150/206 (72%), Gaps = 1/206 (0%)
Query: 48 DLGAASTVAKQDSNG-WTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTK 106
D T+A ++ +G +TLNG+K +ITNG ++ +VFA TDKSK + GI+AFI++ T
Sbjct: 136 DASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSKGNHGITAFILEDGTP 195
Query: 107 GLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQAL 166
G + GKKEDK+GI+ S T L+F+D +PAEN+LGE G GFKIAMMTLD GRIG+A+QAL
Sbjct: 196 GFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGEEGKGFKIAMMTLDGGRIGVAAQAL 255
Query: 167 GIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQP 226
GIA+A+L AVEY+ +R FG+P+ K QSI K+ADM +++E+AR L ++AA K +P
Sbjct: 256 GIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADMKMQIEAARNLVYKAACKKQEGKP 315
Query: 227 FTKEAAMAKLAASETATYNAHQAIQI 252
FT +AA+AK AS+ A +A+QI
Sbjct: 316 FTVDAAIAKRVASDVAMRVTTEAVQI 341
Score = 80.6 bits (200), Expect = 9e-18
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAA 52
K DF E +L P + D + +Y KE I ++ LG+ G E G +
Sbjct: 11 DFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSLGITGAYFEEKYGGS 62
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP:
a.29.3.1 e.6.1.1
Length = 379
Score = 356 bits (916), Expect = e-124
Identities = 96/205 (46%), Positives = 132/205 (64%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKG 107
D A T A + + + LNGTK WI+NG E+E VVFAT + +HKG+ A +V++ T G
Sbjct: 132 DAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRHKGVVALVVERGTPG 191
Query: 108 LSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALG 167
K K+G AS T L+FED +P EN LGE G GFKIAM TL+ RI +A+ ++G
Sbjct: 192 FKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGEEGEGFKIAMQTLNKTRIPVAAGSVG 251
Query: 168 IAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPF 227
+A+ +LD A +YA +R AFG+PI Q+IQ K+ DM + +E+AR+ T+ AA+L D P
Sbjct: 252 VARRALDEARKYAKEREAFGEPIANFQAIQFKLVDMLIGIETARMYTYYAAWLADQGLPH 311
Query: 228 TKEAAMAKLAASETATYNAHQAIQI 252
+A+AK ASE A A+QAIQI
Sbjct: 312 AHASAIAKAYASEIAFEAANQAIQI 336
Score = 80.2 bits (199), Expect = 1e-17
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLG 50
L R F + + P+A + D + P I+K+ E+GL+ +PE+ G
Sbjct: 11 QLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYG 60
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project protein structural and functional analyses; HET:
FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1
PDB: 1ws9_A 2cx9_A*
Length = 387
Score = 354 bits (911), Expect = e-123
Identities = 104/209 (49%), Positives = 135/209 (64%), Gaps = 4/209 (1%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDK----SKKHKGISAFIVDK 103
D A T A++ GW LNGTK +IT G + VV A TD +KH+GISAF +
Sbjct: 135 DAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYVVMARTDPPPSPERKHQGISAFAFFR 194
Query: 104 PTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIAS 163
P +GL +G+KE+KLG+ AS T LI ED +P E LLGE G GF + LD GRIGIA+
Sbjct: 195 PERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEALLGERGKGFYDVLRVLDGGRIGIAA 254
Query: 164 QALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDN 223
A+G+ QA+LD A+ YA R AFG+PI + + + K+A+ + +LE+ARLL +AA LKD
Sbjct: 255 MAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEAATELEAARLLYLKAAELKDA 314
Query: 224 KQPFTKEAAMAKLAASETATYNAHQAIQI 252
+PFT EAA AKL ASE A +AIQI
Sbjct: 315 GRPFTLEAAQAKLFASEAAVKACDEAIQI 343
Score = 80.2 bits (199), Expect = 1e-17
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAA 52
+ R+F + E+ P AA+ DR +P + ++K+ E G+ G VPE G A
Sbjct: 13 QVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVFGALVPEAYGGA 64
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid; HET:
FDA; 2.10A {Mycobacterium thermoresistibile}
Length = 393
Score = 349 bits (897), Expect = e-121
Identities = 89/206 (43%), Positives = 124/206 (60%), Gaps = 1/206 (0%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKG 107
D + T A D + W LNG+K WITNG +S V A TD K GISAF+V K +G
Sbjct: 146 DAASMRTRAVADGDDWILNGSKCWITNGGKSTWYTVMAVTDPDKGANGISAFMVHKDDEG 205
Query: 108 LSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALG 167
++G KE KLGI S T L FE+C IP + ++GEPG GFK A+ TLD R I +QA+G
Sbjct: 206 FTVGPKERKLGIKGSPTTELYFENCRIPGDRIIGEPGTGFKTALATLDHTRPTIGAQAVG 265
Query: 168 IAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDN-KQP 226
IAQ +LD A+ Y +R FG+P+ Q +Q +ADM++K+E+ARL+ + AA + +
Sbjct: 266 IAQGALDAAIAYTKERKQFGRPVSDNQGVQFMLADMAMKIEAARLMVYSAAARAERGEGD 325
Query: 227 FTKEAAMAKLAASETATYNAHQAIQI 252
+A +K AS+ A A+Q+
Sbjct: 326 LGFISAASKCFASDVAMEVTTDAVQL 351
Score = 79.9 bits (198), Expect = 2e-17
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLG 50
L + +R E E+ P AA++D + +P+E + + G + VPE+ G
Sbjct: 25 ALREAIRALAEKEIAPYAAEVDEKARFPEEALAALNSSGFSAIHVPEEYG 74
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for
infectious disease, S FAD, FADH, tuberculosis,
oxidoredu; HET: FAD; 2.35A {Mycobacterium
thermoresistibile}
Length = 387
Score = 348 bits (895), Expect = e-120
Identities = 80/205 (39%), Positives = 128/205 (62%), Gaps = 2/205 (0%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKG 107
D A A G+ +NG+K+WIT+G +++ +FA T + +G+S F+V G
Sbjct: 143 DAAALRCAATPTDGGYVINGSKSWITHGGKADFYTLFARTGE--GSRGVSCFLVPADQPG 200
Query: 108 LSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALG 167
LS GK E+K+G++A T S +++ I A+ +GE G G +IA LD+GR+GIA+ A G
Sbjct: 201 LSFGKPEEKMGLHAVPTTSAFYDNARIDADRRIGEEGQGLQIAFSALDSGRLGIAAVATG 260
Query: 168 IAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPF 227
+AQA+LD AV YA++RTAFG+ II Q + +ADM+ + +AR AA +D +P+
Sbjct: 261 LAQAALDEAVAYANERTAFGRKIIDHQGLGFLLADMAAAVATARATYLDAARRRDQGRPY 320
Query: 228 TKEAAMAKLAASETATYNAHQAIQI 252
+++A++AKL A++ A A+Q+
Sbjct: 321 SQQASIAKLTATDAAMKVTTDAVQV 345
Score = 78.3 bits (194), Expect = 6e-17
Identities = 13/50 (26%), Positives = 27/50 (54%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLG 50
L + R+ + L PI + +++ YP+ +++G GL+ + PE+ G
Sbjct: 22 ELIELTREIADKVLDPIVDRHEKDETYPEGVFEQLGAAGLLSLPQPEEWG 71
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national
project on protein STR and functional analyses; HET:
FAD; 2.50A {Thermus thermophilus}
Length = 372
Score = 345 bits (888), Expect = e-120
Identities = 87/205 (42%), Positives = 128/205 (62%), Gaps = 5/205 (2%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKG 107
D + A++ G+ LNG K+WIT+ + VV A T+K GISAF+V+K T G
Sbjct: 131 DAKSLRAEARRVKGGFVLNGVKSWITSAGHAHLYVVMARTEK-----GISAFLVEKGTPG 185
Query: 108 LSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALG 167
LS G+ E+K+G++A+ T + E+ +P ENLLGE G G A+ LD+GR+G+A+QA+G
Sbjct: 186 LSFGRPEEKMGLHAAHTAEVRLEEVFVPEENLLGEEGRGLAYALAGLDSGRVGVAAQAVG 245
Query: 168 IAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPF 227
IA+ + + A YA +R FG+ + + Q+I KIADM +K+ +AR L AA KD + F
Sbjct: 246 IARGAFEIAKAYAEEREQFGKKLKEHQAIAFKIADMHVKIAAARALVLEAARKKDRGERF 305
Query: 228 TKEAAMAKLAASETATYNAHQAIQI 252
T EA+ AKL AS A +A+Q+
Sbjct: 306 TLEASAAKLFASAAAVEVTREAVQV 330
Score = 79.4 bits (197), Expect = 2e-17
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAA 52
++ VR L P+A + DR+ YP Q+K + ELGL+G+ PE+ G
Sbjct: 9 LVLDAVRRVAREVLYPLAPEYDRKAEYPWPQLKALAELGLLGMTTPEEWGGV 60
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron
transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1
e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A*
3mdd_A* 3mde_A*
Length = 396
Score = 346 bits (889), Expect = e-119
Identities = 76/208 (36%), Positives = 124/208 (59%), Gaps = 3/208 (1%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTD---KSKKHKGISAFIVDKP 104
D+ T A++ + + +NG K WITNG ++ + A +D K+ +K + FIV+
Sbjct: 143 DVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPANKAFTGFIVEAD 202
Query: 105 TKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQ 164
T G+ +G+KE +G S T ++FED +P EN+L G GFK+AM D R +A+
Sbjct: 203 TPGIQIGRKELNMGQRCSDTRGIVFEDVKVPKENVLIGDGAGFKVAMGAFDKERPVVAAG 262
Query: 165 ALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNK 224
A+G+AQ +LD A +YA +R FG+ +++ Q+I +A+M++K+E AR+ RAA+ D+
Sbjct: 263 AVGLAQRALDEATKYALERKTFGKLLVEHQAISFMLAEMAMKVELARMSYQRAAWEVDSG 322
Query: 225 QPFTKEAAMAKLAASETATYNAHQAIQI 252
+ T A++AK A + A A A+QI
Sbjct: 323 RRNTYYASIAKAFAGDIANQLATDAVQI 350
Score = 79.9 bits (198), Expect = 2e-17
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLG 50
T R F E+ P+AA+ D+ YP I++ ELGLM +PE+ G
Sbjct: 22 EFQATARKFAREEIIPVAAEYDKTGEYPVPLIRRAWELGLMNTHIPENCG 71
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA
dehydrogenase, flavoprotein, isovaleric acidemia; HET:
FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 394
Score = 344 bits (884), Expect = e-119
Identities = 84/207 (40%), Positives = 114/207 (55%), Gaps = 2/207 (0%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSK--KHKGISAFIVDKPT 105
D+ + A++ N + LNG K WITNG +++ +V+A TD + +GI+AFIV+K
Sbjct: 143 DVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRGITAFIVEKGM 202
Query: 106 KGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQA 165
G S KK DKLG+ S+TC LIFEDC IPA N+LG G + M LD R+ +A
Sbjct: 203 PGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGHENKGVYVLMSGLDLERLVLAGGP 262
Query: 166 LGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQ 225
LG+ QA LD + Y R AFGQ I Q +Q K+ADM +L + R + A D
Sbjct: 263 LGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYTRLMACRQYVYNVAKACDEGH 322
Query: 226 PFTKEAAMAKLAASETATYNAHQAIQI 252
K+ A L ++E AT A IQ
Sbjct: 323 CTAKDCAGVILYSAECATQVALDGIQC 349
Score = 75.6 bits (187), Expect = 6e-16
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYP--KEQIKKMGELGLMGVEVPEDLGAA 52
L +T+ F + L P A ++DR + + +E K++G LG++G+ P G +
Sbjct: 19 QLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGS 72
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial;
flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC;
1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 393
Score = 338 bits (870), Expect = e-117
Identities = 82/206 (39%), Positives = 124/206 (60%), Gaps = 2/206 (0%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKG 107
D + T AK+ + + LNG+KA+I+ ES+ VV T KGIS +V+K T G
Sbjct: 146 DAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVVMCRTG-GPGPKGISCIVVEKGTPG 204
Query: 108 LSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALG 167
LS GKKE K+G N+ T ++IFEDC++P N +G G GF IA+ L+ GRI IAS +LG
Sbjct: 205 LSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGSEGQGFLIAVRGLNGGRINIASCSLG 264
Query: 168 IAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAY-LKDNKQP 226
A AS+ ++ + R FG+P+ Q +Q +ADM+ +L +ARL+ AA L++ ++
Sbjct: 265 AAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADMATRLVAARLMVRNAAVALQEERKD 324
Query: 227 FTKEAAMAKLAASETATYNAHQAIQI 252
+MAKL A++ +QA+Q+
Sbjct: 325 AVALCSMAKLFATDECFAICNQALQM 350
Score = 79.5 bits (197), Expect = 2e-17
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLG 50
K DF E+ P A+ D++ L+P + ++K +LG GV + D+G
Sbjct: 25 EFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVG 74
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET:
FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A*
Length = 397
Score = 337 bits (866), Expect = e-116
Identities = 78/207 (37%), Positives = 128/207 (61%), Gaps = 3/207 (1%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVD-KPTK 106
D+ A S+ A+ + W LNG+K WI+N +++ + +A TDK+ +G+SAF+++ +
Sbjct: 136 DVMAMSSTAEDKGDHWLLNGSKTWISNAAQADVLIYYAYTDKAAGSRGLSAFVIEPRNFP 195
Query: 107 GLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQAL 166
G+ E KLG +AS T L ++ +P EN+LG+PG G +I +L+ R+ A+ +
Sbjct: 196 GIKTSNLE-KLGSHASPTGELFLDNVKVPKENILGKPGDGARIVFGSLNHTRLSAAAGGV 254
Query: 167 GIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDN-KQ 225
G+AQA LD A++Y ++R FG+PI Q Q IA M++++E+ARLL ++AA KD +
Sbjct: 255 GLAQACLDAAIKYCNERRQFGKPIGDFQMNQDMIAQMAVEVEAARLLAYKAAAAKDEGRL 314
Query: 226 PFTKEAAMAKLAASETATYNAHQAIQI 252
+ AMAK AA E + A+ A++I
Sbjct: 315 NNGLDVAMAKYAAGEAVSKCANYAMRI 341
Score = 75.6 bits (187), Expect = 6e-16
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQI-KKMGELGLMGVEVPEDLGAA 52
ML K VR+F ++ P A + D E+ +P E+ + MGELG G +PE+ G
Sbjct: 11 MLQKEVRNFVNKKIVPFADQWDNENHFPYEEAVRPMGELGFFGTVIPEEYGGE 63
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase
family, kijanose, kijani FAD, flavoprotein; HET: TYD;
2.05A {Actinomadura kijaniata}
Length = 439
Score = 320 bits (823), Expect = e-109
Identities = 47/233 (20%), Positives = 93/233 (39%), Gaps = 24/233 (10%)
Query: 34 KMGELGLMGVEVPEDLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKH 93
+ G + + A +T+ + GW L+G K ++ V+ A TD +
Sbjct: 139 AVVCSG-IK----DHHTAVTTLRPDGAGGWLLSGRKTLVSMAPVGTHFVINARTDGTDGP 193
Query: 94 KGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFK--IAM 151
+++ +V + T G ++ D LG+ AS T ++F+DC IPA+++L +G + +
Sbjct: 194 PRLASPVVTRDTPGFTVLDNWDGLGMRASGTVDIVFDDCPIPADHVLMRDPVGARNDAVL 253
Query: 152 MTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESAR 211
+ + +G+AQA+ D AV +R Q +A++ +L + R
Sbjct: 254 AGQTVSSVSVLGVYVGVAQAAYDTAVAALERRPEPPQAA-----ALTLVAEIDSRLYALR 308
Query: 212 LLTWRAAY------------LKDNKQPFTKEAAMAKLAASETATYNAHQAIQI 252
A + + + + AKLA + A + +
Sbjct: 309 ATAGSALTAADALSADLSGDMDERGRQMMRHFQCAKLAVNRLAPEIVSDCLSL 361
Score = 70.0 bits (172), Expect = 5e-14
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAA 52
+L + ++ AA+ DR+ +P + + + GLMG VP +LG
Sbjct: 26 VLLDRLAAHLP-RIRSTAAEHDRDGTFPTDTFDALRKDGLMGATVPAELGGL 76
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA
dehydrogenase, , aldehyde dehydrogenase, oxidoreductase;
HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP:
a.29.3.1 e.6.1.1
Length = 366
Score = 317 bits (816), Expect = e-109
Identities = 55/222 (24%), Positives = 91/222 (40%), Gaps = 9/222 (4%)
Query: 36 GELGLMGVEVPE---DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKK 92
G+L +G + DL A T + D + ++G K W T ++ VVF +
Sbjct: 104 GKLAAVGFSERQAGSDLSAMRTRVRLDGDTAVVDGHKVWTTAAAYADHLVVFGLQEDG-- 161
Query: 93 HKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMM 152
+ +V T G+ + + G A+ L + +PA +L G + +
Sbjct: 162 --SGAVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSGASLPMLVA 219
Query: 153 -TLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESAR 211
+L GR +A +GI +A AV +A R FG+P+ Q + IAD+ + A
Sbjct: 220 ASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTAEQIAA 279
Query: 212 LLTWRAAYLKDNKQPF-TKEAAMAKLAASETATYNAHQAIQI 252
+ A+ D P +AK A+E A A A Q+
Sbjct: 280 RVCEYASDHWDEGSPEMVPATILAKHVAAERAAAGAATAAQV 321
Score = 67.9 bits (167), Expect = 2e-13
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 6 VRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLG 50
+ AA+ D P++ + ++G GL+ EV + G
Sbjct: 4 RDALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHG 48
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas
oxidoreductase; 3.15A {Micromonospora carbonacea}
Length = 395
Score = 309 bits (794), Expect = e-105
Identities = 47/220 (21%), Positives = 80/220 (36%), Gaps = 20/220 (9%)
Query: 48 DLGAASTVAKQD-SNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTK 106
D T D + GW L+G K ++ + V A ++ +V +
Sbjct: 136 DAPGVVTELHSDGAGGWLLSGRKVLVSMAPIATHFFVHAQRRDDDGSVFLAVPVVHRDAP 195
Query: 107 GLSLGKKEDKLGINASSTCSLIFEDCSIPAENLL--GEPGMGFKIAMMTLDAGRIGIASQ 164
GL++ D LG+ AS T ++F+ C + A+ LL G G + I +
Sbjct: 196 GLTVLDNWDGLGMRASGTLEVVFDRCPVRADELLERGPVGARRDAVLAGQTVSSITMLGI 255
Query: 165 ALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKD-- 222
GIAQA+ D AV + + R G+P + +A + +L + R A D
Sbjct: 256 YAGIAQAARDIAVGFCAGR--GGEPR---AGARALVAGLDTRLYALRTTVGAALTNADAA 310
Query: 223 ----------NKQPFTKEAAMAKLAASETATYNAHQAIQI 252
+ AK+ +E A + +
Sbjct: 311 SVDLSGDPDERGRRMMTPFQYAKMTVNELAPAVVDDCLSL 350
Score = 73.8 bits (182), Expect = 3e-15
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAA 52
+ + + AA DR +P E ++ +LGLMG VP +LG
Sbjct: 15 TVVDLLAGVIP-RISAEAADRDRTGTFPVEAFEQFAKLGLMGATVPAELGGL 65
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na
project on protein structural and functional analyses;
HET: FAD; 2.30A {Thermus thermophilus}
Length = 577
Score = 314 bits (807), Expect = e-105
Identities = 78/221 (35%), Positives = 119/221 (53%), Gaps = 20/221 (9%)
Query: 48 DLGAASTVAKQDSNG--WTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPT 105
D AA T A +G + LNG K WI+N + VFA D + +AF+V++ T
Sbjct: 156 DALAAKTRATLSEDGKHYILNGVKQWISNAGFAHLFTVFAKVDG----EHFTAFLVERDT 211
Query: 106 KGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQA 165
GLS G +E K+GI ASST +I ED +P EN+LGE G G KIA L+ GR + + A
Sbjct: 212 PGLSFGPEEKKMGIKASSTRQVILEDVKVPVENVLGEIGKGHKIAFNVLNVGRYKLGAGA 271
Query: 166 LGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNK- 224
+G A+ +L+ + +YA++R FG+PI + IQQK+ +M+ ++ +A +R L D
Sbjct: 272 VGGAKRALELSAQYATQRVQFGRPIGRFGLIQQKLGEMASRIYAAESAVYRTVGLIDEAL 331
Query: 225 -------------QPFTKEAAMAKLAASETATYNAHQAIQI 252
+ + EA++ K+ SE Y + +QI
Sbjct: 332 LGKKGPEAVMAGIEEYAVEASIIKVLGSEVLDYVVDEGVQI 372
Score = 73.9 bits (182), Expect = 3e-15
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHL-YPKEQIKKMGELGLMGVEVPEDLG 50
+ +T R F E E+ P+ +++ L ++K GELGL+ ++VPE+ G
Sbjct: 34 EIARTTRTFVEREVLPLLERMEHGELELNVPLMRKAGELGLLAIDVPEEYG 84
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA
dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A
{Podospora anserina}
Length = 438
Score = 306 bits (787), Expect = e-103
Identities = 46/229 (20%), Positives = 92/229 (40%), Gaps = 22/229 (9%)
Query: 46 PEDLGAASTVAKQDSNGWTLNGTKAWITNGYESEAT--------VVFATTDKSKKHKGIS 97
+ T A+ + + W +NG K W TN + ATT + +
Sbjct: 145 EKGAPGFQTTARLEGDEWVINGEKMWATNCAGWDFKGCDLACVVCRDATTPLEEGQDPEN 204
Query: 98 AFIV---------DKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFK 148
++ + + G + S + + + +P +N+L G G K
Sbjct: 205 KVMIILVTRADLDRNGEGSFEVLRHVATPGHTSVSGPHVRYTNVRVPTKNVLCPAGQGAK 264
Query: 149 IAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQ-PIIKLQSIQQKIADMSLKL 207
+A D + + + +G+ +A+ D A+++A + G P+++ Q+ ++ + ++
Sbjct: 265 VAFGAFDGSAVLVGAMGVGLMRAAFDAALKFAKEDNRGGAVPLLERQAFADLLSGVKIQT 324
Query: 208 ESARLLTWRAAYLKDN----KQPFTKEAAMAKLAASETATYNAHQAIQI 252
E+AR LTW+AA+ +N + A AK+ SE A I
Sbjct: 325 EAARALTWKAAHAMENGPGDYDARRELALAAKVFCSEAAVKACTDVINA 373
Score = 71.5 bits (176), Expect = 2e-14
Identities = 6/57 (10%), Positives = 13/57 (22%), Gaps = 7/57 (12%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDRE-------HLYPKEQIKKMGELGLMGVEVPEDLG 50
Y+ R L P + + G++ ++ G
Sbjct: 13 GTYQAARSLARNLLMPARQTYLQHPPNSPLRFQSTQPTYAAAVSAGILKGQISPAHG 69
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-structure,
beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus
anthracis}
Length = 597
Score = 309 bits (794), Expect = e-103
Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 25/226 (11%)
Query: 48 DLGAASTVAKQDSNG--WTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPT 105
D A T A+ ++ G + LNG K WITN ++ +V+A D + SAFIV+K
Sbjct: 161 DALGAKTTARLNAEGTHYVLNGEKQWITNSAFADVFIVYAKIDG----EHFSAFIVEKDY 216
Query: 106 KGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQA 165
G+S +E K+GI SST +LI ED +P ENLLGE G G IA L+ GR +
Sbjct: 217 AGVSTSPEEKKMGIKCSSTRTLILEDALVPKENLLGEIGKGHIIAFNILNIGRYKLGVGT 276
Query: 166 LGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNK- 224
+G A+ +++ + +YA++R F QPI + IQ+K+A+M+ K +A +R L +++
Sbjct: 277 VGSAKRAVEISAQYANQRQQFKQPIARFPLIQEKLANMAAKTYAAESSVYRTVGLFESRM 336
Query: 225 ------------------QPFTKEAAMAKLAASETATYNAHQAIQI 252
+ E ++ K+ SE Y + +QI
Sbjct: 337 STLSEEEVKDGKAVAASIAEYAIECSLNKVFGSEVLDYTVDEGVQI 382
Score = 72.4 bits (178), Expect = 1e-14
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDR-EHLYPKEQIKKMGELGLMGVEVPEDLG 50
M+ KT DF E+ P L++ E +K+ GELGL+G +VPE+ G
Sbjct: 39 MIAKTTEDFIVNEVLPELEYLEQHEFDRSVRLLKEAGELGLLGADVPEEYG 89
Score = 27.7 bits (62), Expect = 4.1
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Query: 164 QALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKL---ESARLLTWRAAYL 220
+ A+ A+++ +G+ + K Q I IAD+ L ESA L T +A
Sbjct: 462 YLVNNAKKIGLMVAGLAAQK--YGKALDKEQEILVNIADIVSNLYAMESAVLRTEKAIK- 518
Query: 221 KDNKQPFTKEAAMAKLAASETATYNAHQAIQI 252
+ ++ ++ E A +
Sbjct: 519 TTGLEKNKQKVLYTEVFCQEAFNEIEAHAKET 550
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid
metabolism, transit peptide, disease mutation, LI
metabolism, coenzyme A dehydrogenase; HET: FAD TH3;
1.45A {Homo sapiens} PDB: 3b96_A*
Length = 607
Score = 307 bits (789), Expect = e-102
Identities = 75/213 (35%), Positives = 115/213 (53%), Gaps = 8/213 (3%)
Query: 48 DLGAASTVAKQDSNG--WTLNGTKAWITNGYESEATVVFATTDKSKKHKG-----ISAFI 100
D + T A G +TLNG+K WI+NG ++ VFA T + G I+AF+
Sbjct: 176 DAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFV 235
Query: 101 VDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIG 160
V++ G++ G E K+GI AS+T + F+ +P+EN+LGE G GFK+AM L+ GR G
Sbjct: 236 VERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFG 295
Query: 161 IASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYL 220
+A+ G + + AV++A+ RT FG+ I IQ+K+A M + + + +
Sbjct: 296 MAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSAN 355
Query: 221 KDN-KQPFTKEAAMAKLAASETATYNAHQAIQI 252
D F EAA++K+ SE A + IQI
Sbjct: 356 MDQGATDFQIEAAISKIFGSEAAWKVTDECIQI 388
Score = 65.1 bits (159), Expect = 3e-12
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLG 50
L + V F E P AK D + + + + ELG G++VP +LG
Sbjct: 56 ELVEPVSRFFEEVNDP--AKNDALEMVEETTWQGLKELGAFGLQVPSELG 103
Score = 26.6 bits (59), Expect = 9.7
Identities = 22/148 (14%), Positives = 44/148 (29%), Gaps = 13/148 (8%)
Query: 96 ISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLD 155
++ K LS K N L+ + G+G +++ L
Sbjct: 424 VALQGCMDKGKELSGLGSALK---NPFGNAGLLLGEAGKQLRRR---AGLGSGLSLSGLV 477
Query: 156 AGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKL---ESARL 212
+ + + A VE + + I+ Q + Q++AD ++ L
Sbjct: 478 HPELSRSGELAVRALEQFATVVEAKLIK--HKKGIVNEQFLLQRLADGAIDLYAMVVVLS 535
Query: 213 LTWRAAYLKDNKQPFTKEAAMAKLAASE 240
R+ L + E + E
Sbjct: 536 RASRS--LSEGHPTAQHEKMLCDTWCIE 561
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA
dehydrogenase, long cell EDGE, FAD, inhibitor,
flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium
oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A*
2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A*
Length = 439
Score = 290 bits (745), Expect = 3e-97
Identities = 47/229 (20%), Positives = 93/229 (40%), Gaps = 26/229 (11%)
Query: 50 GAASTVAKQDSNGWTLNGTKAWITNGYESEAT-----VVFATTD---------KSKKHKG 95
T A++ N W ++G K W +N + V
Sbjct: 148 PGLQTTARKVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQ 207
Query: 96 ISAFIVDKPTKGLS------LGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKI 149
I+ +V + T + + + + G +S F + +P ENLL PG+ +
Sbjct: 208 IAVLLVTRETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLCTPGLKAQG 267
Query: 150 AMM-TLDAGRIGIASQALGIAQASLDCAVEYASKRTAFG-QPIIKLQSIQQKIADMSLKL 207
+ + + A+G A+A+ + A+ +A T G + II+ QS+ K+ D ++L
Sbjct: 268 LVETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADKLIDCKIRL 327
Query: 208 ESARLLTWRAAYLKDNK----QPFTKEAAMAKLAASETATYNAHQAIQI 252
E++RLL W+A +++ + + A K+ ++ A A++
Sbjct: 328 ETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKA 376
Score = 67.0 bits (164), Expect = 6e-13
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 6/56 (10%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREH------LYPKEQIKKMGELGLMGVEVPEDLG 50
+ + F L +A+ + + ++ GL+ +VP LG
Sbjct: 12 EARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIPLG 67
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FDA; 2.50A {Mycobacterium
abscessus}
Length = 403
Score = 287 bits (736), Expect = 2e-96
Identities = 63/205 (30%), Positives = 103/205 (50%), Gaps = 1/205 (0%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKG 107
D+ T A ++ + + +NG K +IT+G ++ T + G+S ++DK + G
Sbjct: 158 DVANLRTRAVREGDTYVVNGAKTFITSGVRADFVTTAVRTG-GPGYGGVSLLVIDKNSPG 216
Query: 108 LSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALG 167
+ ++ DK+G S T L F D +PA+NL+G GF M A R+GIA QA
Sbjct: 217 FEVSRRLDKMGWRCSDTAELSFVDVRVPADNLVGAENSGFLQIMQQFQAERLGIAVQAYA 276
Query: 168 IAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPF 227
A +LD A +A +R FG+P+ Q I+ K+A+M+ +++ A T +
Sbjct: 277 TAGRALDLAKSWARERETFGRPLTGRQIIRHKLAEMARQVDVACTYTRAVMQRWLAGEDV 336
Query: 228 TKEAAMAKLAASETATYNAHQAIQI 252
E +MAK A Y ++A+QI
Sbjct: 337 VAEVSMAKNTAVYACDYVVNEAVQI 361
Score = 69.9 bits (172), Expect = 6e-14
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLG 50
L + R F E E+ P A+ + P++ E+GL+G+ PE++G
Sbjct: 35 ALSQMARSFVEREIAPKLAEWEHVGEIPRDLHLNAAEVGLLGIGFPEEVG 84
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FAO; 1.70A {Mycobacterium
smegmatis} PDB: 3oib_A*
Length = 403
Score = 286 bits (735), Expect = 3e-96
Identities = 68/206 (33%), Positives = 105/206 (50%), Gaps = 2/206 (0%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKG 107
D+G T A D + + +NG K +IT+G ++ V A T G+S +VDK T G
Sbjct: 155 DVGHLRTRADLDGDHYVINGAKTYITSGVRADYVVTAARTG-GPGAGGVSLIVVDKGTPG 213
Query: 108 LSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALG 167
+ +K DK+G +S T L + D +P NL+G GF A R+G+A+QA
Sbjct: 214 FEVTRKLDKMGWRSSDTAELSYTDVRVPVANLVGSENTGFAQIAAAFVAERVGLATQAYA 273
Query: 168 IAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQP- 226
AQ LD VE+ R FG+P+I Q++Q +A M+ +++ AR+ T + +
Sbjct: 274 GAQRCLDLTVEWCRNRDTFGRPLISRQAVQNTLAGMARRIDVARVYTRHVVERQLAGETN 333
Query: 227 FTKEAAMAKLAASETATYNAHQAIQI 252
E AK A E + A+QA+Q+
Sbjct: 334 LIAEVCFAKNTAVEAGEWVANQAVQL 359
Score = 69.9 bits (172), Expect = 5e-14
Identities = 23/50 (46%), Positives = 29/50 (58%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLG 50
L KTVR F E E+ P A + +R P+E +K ELGL+G PED G
Sbjct: 32 ALRKTVRAFAEREVLPHAHEWERAGEIPRELHRKAAELGLLGAGFPEDAG 81
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA
structural genomics, PSI, protein structure initiative;
HET: FAD; 1.80A {Geobacillus kaustophilus}
Length = 385
Score = 282 bits (723), Expect = 1e-94
Identities = 71/207 (34%), Positives = 112/207 (54%), Gaps = 2/207 (0%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKK--HKGISAFIVDKPT 105
DL ST A +D + + +NG K +ITNG ++ VV TD K H+GIS +V++ T
Sbjct: 137 DLANISTTAVKDGDYYIVNGQKTFITNGIHADLIVVACKTDPQAKPPHRGISLLVVERDT 196
Query: 106 KGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQA 165
G + G+K +K+G++A T L F+D +PA NLLGE G GF M L R+ +A A
Sbjct: 197 PGFTRGRKLEKVGLHAQDTAELFFQDAKVPAYNLLGEEGKGFYYLMEKLQQERLVVAIAA 256
Query: 166 LGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQ 225
A+ +Y +RTAFG+ + + Q++Q ++A+M+ ++ R R +
Sbjct: 257 QTAAEVMFSLTKQYVKQRTAFGKRVSEFQTVQFRLAEMATEIALGRTFVDRVIEEHMAGK 316
Query: 226 PFTKEAAMAKLAASETATYNAHQAIQI 252
E +MAK +E A A +A+Q+
Sbjct: 317 QIVTEVSMAKWWITEMAKRVAAEAMQL 343
Score = 67.5 bits (166), Expect = 4e-13
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLG 50
M R F E E P ++ + P+ KMGE G + V E G
Sbjct: 16 MFRAAFRKFLEKEAYPHYNDWEKRGIIPRSFWAKMGENGFLCPWVDEKYG 65
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening,
optimization, protein crystallization, structural
genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei
1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A
Length = 396
Score = 257 bits (659), Expect = 8e-85
Identities = 63/205 (30%), Positives = 102/205 (49%), Gaps = 2/205 (0%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKG 107
D G+ T A++ G++L+G+K WITN ++ VV+A D+ I FI++K KG
Sbjct: 147 DPGSMVTRARKVPGGYSLSGSKMWITNSPIADVFVVWAKLDE-DGRDEIRGFILEKGCKG 205
Query: 108 LSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALG 167
LS K+G+ AS T ++ ++ +P EN+L G + L++ R GIA ALG
Sbjct: 206 LSAPAIHGKVGLRASITGEIVLDEAFVPEENILPH-VKGLRGPFTCLNSARYGIAWGALG 264
Query: 168 IAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPF 227
A++ A +Y R FG+P+ Q IQ+K+ADM ++ R +KD
Sbjct: 265 AAESCWHIARQYVLDRKQFGRPLAANQLIQKKLADMQTEITLGLQGVLRLGRMKDEGTAA 324
Query: 228 TKEAAMAKLAASETATYNAHQAIQI 252
+ ++ K + A A A +
Sbjct: 325 VEITSIMKRNSCGKALDIARLARDM 349
Score = 66.4 bits (163), Expect = 7e-13
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAA--STVA 56
M+ + +G+L P + R ++MGE+GL+G +PE G V+
Sbjct: 25 MVRDAAHAYAQGKLAPRVTEAFRHETTDAAIFREMGEIGLLGPTIPEQYGGPGLDYVS 82
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase,
mycobacerium smegmatis, S genomics; HET: FDA; 1.45A
{Mycobacterium smegmatis}
Length = 399
Score = 253 bits (649), Expect = 3e-83
Identities = 62/205 (30%), Positives = 98/205 (47%), Gaps = 6/205 (2%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKG 107
+ T A++D + W LNGTK WITNG ++ V+A TD GI F+V T G
Sbjct: 153 NPAGMRTRARRDGSDWILNGTKMWITNGNLADVATVWAQTDD-----GIRGFLVPTDTPG 207
Query: 108 LSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALG 167
+ + KL + AS T L+ ++ +PA L G + L+ R GI ALG
Sbjct: 208 FTANEIHRKLSLRASVTSELVLDNVRLPASAQLPL-AEGLSAPLSCLNEARFGIVFGALG 266
Query: 168 IAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPF 227
A+ SL+ + Y R F +P+ Q Q+K+A+M+++L LL +KD +
Sbjct: 267 AARDSLETTIAYTQSREVFDKPLSNYQLTQEKLANMTVELGKGMLLAIHLGRIKDAEGVR 326
Query: 228 TKEAAMAKLAASETATYNAHQAIQI 252
++ ++ KL A A + +
Sbjct: 327 PEQISLGKLNNVREAIAIARECRTL 351
Score = 63.0 bits (154), Expect = 1e-11
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGA-ASTVA 56
+ TVR F + LKP P E K+ G LG++G+ + A + V+
Sbjct: 32 DIAATVRQFVDTRLKPNVEGWFESATLPSELAKEFGNLGVLGMHLQGYGCAGTNAVS 88
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; HET: FDA; 1.70A
{Mycobacterium smegmatis}
Length = 403
Score = 246 bits (630), Expect = 3e-80
Identities = 64/205 (31%), Positives = 93/205 (45%), Gaps = 6/205 (2%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKG 107
D T A + + W L GTK WITNG ++ VV+A TD+ GI F+V T G
Sbjct: 158 DPAGMRTRATRSGDDWILTGTKMWITNGSVADVAVVWARTDE-----GIRGFVVPTDTPG 212
Query: 108 LSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALG 167
+ + K+ + AS T L+ + +P L + L+ R GI ALG
Sbjct: 213 FTANTIKSKMSLRASVTSELVLDGVRLPDSARLPG-ATSLGAPLRCLNEARFGIVFGALG 271
Query: 168 IAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPF 227
A+ L+ A+ YA R F +PI Q QQK+ADM+L+ LL KD +
Sbjct: 272 AARDCLETALAYACSREQFDRPIGGFQLTQQKLADMTLEYGKGFLLALHLGRQKDAGELA 331
Query: 228 TKEAAMAKLAASETATYNAHQAIQI 252
++ ++ KL A A A +
Sbjct: 332 PEQVSLGKLNNVREAIEIARTARTV 356
Score = 56.8 bits (138), Expect = 1e-09
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYP-KEQIKKMGELGLMGVEVPEDLGA-ASTVA 56
+ TVR + +KP A + P +E ++GELGL+G+ + A S VA
Sbjct: 36 EIRDTVRSVVQRRIKPHIASWYEDGELPARELAVELGELGLLGMHLKGYGCAGMSAVA 93
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin,
peroxisome, glyoxysome, fatty acid metabo lipid
metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A
{Arabidopsis thaliana} PDB: 2ix6_A*
Length = 436
Score = 247 bits (632), Expect = 3e-80
Identities = 54/205 (26%), Positives = 90/205 (43%), Gaps = 4/205 (1%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKG 107
D T A + GW +NG K WI N ++ ++FA ++ I+ FIV K G
Sbjct: 182 DASGLGTTATKVEGGWKINGQKRWIGNSTFADLLIIFA---RNTTTNQINGFIVKKDAPG 238
Query: 108 LSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALG 167
L K +K+G+ ++ ++ +P E+ L F+ L R+ +A Q +G
Sbjct: 239 LKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPG-VNSFQDTSKVLAVSRVMVAWQPIG 297
Query: 168 IAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPF 227
I+ D Y +R FG P+ Q QQK+ M +++ L+ WR L + Q
Sbjct: 298 ISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQMT 357
Query: 228 TKEAAMAKLAASETATYNAHQAIQI 252
+A++ K S A A ++
Sbjct: 358 PGQASLGKAWISSKARETASLGREL 382
Score = 62.3 bits (152), Expect = 2e-11
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGA-ASTVA 56
+ K VR+ E E+ PI + + +P K+G +G+ G + S A
Sbjct: 61 AIRKKVRECMEKEVAPIMTEYWEKAEFPFHITPKLGAMGVAGGSIKGYGCPGLSITA 117
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD,
STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus
thermophilus}
Length = 385
Score = 243 bits (623), Expect = 2e-79
Identities = 65/203 (32%), Positives = 100/203 (49%), Gaps = 5/203 (2%)
Query: 50 GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKGLS 109
G T A+++ + W LNGTK WITNG + V++A + + + F+V T G
Sbjct: 142 GNMKTRARREGDTWVLNGTKMWITNGNLAHLAVIWAKDEGGE----VLGFLVPTDTPGFQ 197
Query: 110 LGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALGIA 169
+ + K+ + AS T L+ E+ +P L + +G K + L R GIA A+G
Sbjct: 198 AREVKRKMSLRASVTSELVLEEVRVPESLRLPK-ALGLKAPLSCLTQARFGIAWGAMGAL 256
Query: 170 QASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTK 229
+A + AV +A R+ FG+P+ K Q +Q K+A+M LL WR A LKD +
Sbjct: 257 EAVYEEAVAFAKSRSTFGEPLAKKQLVQAKLAEMLAWHTEGLLLAWRLARLKDEGKLTPA 316
Query: 230 EAAMAKLAASETATYNAHQAIQI 252
+ ++AK A A A I
Sbjct: 317 QVSLAKRQNVWKALQAARMARDI 339
Score = 65.3 bits (160), Expect = 2e-12
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAA--STVA 56
+ K R F E E P E ++P I + ELG +G +P + G A S+ A
Sbjct: 17 EVQKAARRFLEKEALPHIRDWWEEGVFPTHLIPRFAELGFLGPTLPPEYGGAGVSSAA 74
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase,
decarboxylation, flavin protein, oxidoreductase; HET:
FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB:
2r0n_A* 1sir_A* 2r0m_A*
Length = 392
Score = 225 bits (577), Expect = 2e-72
Identities = 61/207 (29%), Positives = 96/207 (46%), Gaps = 7/207 (3%)
Query: 48 DLGAASTVAKQ--DSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPT 105
D + T A + +TLNGTK WITN ++ VV+A + I F+++K
Sbjct: 141 DPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGFLLEKGM 196
Query: 106 KGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQA 165
+GLS + + K + AS+T +I + +P EN+L L+ R GIA
Sbjct: 197 RGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPG-ASSLGGPFGCLNNARYGIAWGV 255
Query: 166 LGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQ 225
LG ++ L A +YA R FG P+ + Q IQ+K+ADM ++ + LKD +
Sbjct: 256 LGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDK 315
Query: 226 PFTKEAAMAKLAASETATYNAHQAIQI 252
+ ++ K A A QA +
Sbjct: 316 AAPEMVSLLKRNNCGKALDIARQARDM 342
Score = 59.1 bits (144), Expect = 2e-10
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGA-ASTVA 56
++ T R + + L P +R ++ +E I +MGELG++G + A S+VA
Sbjct: 20 LIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVA 76
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein,
oxidoreducta; HET: FAD; 2.80A {Homo sapiens}
Length = 428
Score = 160 bits (407), Expect = 6e-47
Identities = 55/209 (26%), Positives = 93/209 (44%), Gaps = 9/209 (4%)
Query: 53 STVAKQDSNGWTLNGTKAWITNGYESEATV--VFATTD--KSKKHKGISAFIVDKPTKGL 108
++D + + +NG K W + + + V T +HK S +V T G+
Sbjct: 168 ECSIQRDEDSYVINGKKWWSSGAGNPKCKIAIVLGRTQNTSLSRHKQHSMILVPMNTPGV 227
Query: 109 SLGKKEDKLGINASST---CSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQA 165
+ + G + + F +PA NL+ G GF+I+ L GRI +
Sbjct: 228 KIIRPLSVFGYTDNFHGGHFEIHFNQVRVPATNLILGEGRGFEISQGRLGPGRIHHCMRT 287
Query: 166 LGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNK- 224
+G+A+ +L E A++R AF + + + + IA+ + +E RLLT +AA+ D
Sbjct: 288 VGLAERALQIMCERATQRIAFKKKLYAHEVVAHWIAESRIAIEKIRLLTLKAAHSMDTLG 347
Query: 225 -QPFTKEAAMAKLAASETATYNAHQAIQI 252
KE AM K+AA + AIQ+
Sbjct: 348 SAGAKKEIAMIKVAAPRAVSKIVDWAIQV 376
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle,
oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus}
SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A*
Length = 661
Score = 158 bits (402), Expect = 6e-45
Identities = 43/250 (17%), Positives = 72/250 (28%), Gaps = 45/250 (18%)
Query: 48 DLGAASTVAKQDSNG--WTLNG-----TKAWITN-GYESEATVVFATTDKSKKHKGISAF 99
L T A D + LN K W G S +V A + G+ AF
Sbjct: 146 HLRGLETTATYDPKTQEFILNSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAF 205
Query: 100 IVD-------KPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPG-------- 144
+V KP G+++G K G L ++ IP EN+L +
Sbjct: 206 VVPIREIGTHKPLPGITVGDIGPKFGYEEMDNGYLKMDNYRIPRENMLMKYAQVKPDGTY 265
Query: 145 ---MGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFG-------QPIIKLQ 194
+ K+ T+ R + A + A+ Y++ R I+ Q
Sbjct: 266 VKPLSNKLTYGTMVFVRSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQ 325
Query: 195 SIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKE------------AAMAKLAASETA 242
+ Q K+ + + + + A K + TA
Sbjct: 326 TQQYKLFPLLATAYAFHFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWTA 385
Query: 243 TYNAHQAIQI 252
+
Sbjct: 386 NAGIEECRMA 395
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix
bundle, oxidoreductase; 2.50A {Burkholderia cepacia}
Length = 515
Score = 146 bits (368), Expect = 6e-41
Identities = 24/223 (10%), Positives = 63/223 (28%), Gaps = 22/223 (9%)
Query: 47 EDLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTK 106
+ + ++ +G +NG KA T + + + + + T
Sbjct: 166 QARSPNLRIVEKTDDGIIVNGVKAVGTGIAFGDYMHIGCLYRPGIPGEQVIFAAIPTNTP 225
Query: 107 GLSL---------GKKEDKLGIN-ASSTCSLIFEDCSIPAEN--LLGEPGMGFKIAMMTL 154
G+++ E L + +F++ IP E +G P
Sbjct: 226 GVTVFCRESTVKNDPAEHPLASQGDELDSTTVFDNVFIPWEQVFHIGNPEHAKLYPQRIF 285
Query: 155 DAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLT 214
D I + + A+ + A+ KL ++ ++A + + +
Sbjct: 286 DWVHYHILIRQVLRAELIVGLAILI-----TEHIGTSKLPTVSARVAKLVAFHLAMQAHL 340
Query: 215 WRAAYLKD-----NKQPFTKEAAMAKLAASETATYNAHQAIQI 252
+ +P + + ++ + +
Sbjct: 341 IASEETGFHTKGGRYKPNPLIYDFGRAHFLQNQMSVMYELLDL 383
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD
cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP:
a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A*
Length = 659
Score = 147 bits (373), Expect = 7e-41
Identities = 43/257 (16%), Positives = 82/257 (31%), Gaps = 55/257 (21%)
Query: 48 DLGAASTVAKQDSNG--WTLNGTKAWITN------GYESEATVVFATTDKSKKHKGISAF 99
++ T A D + ++ + G S VV+A + K GI F
Sbjct: 145 NVQGLETTATLDPKTDEFVIHTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGF 204
Query: 100 IVD-------KPTKGLSLGKKEDKLG---INASSTCSLIFEDCSIPAENLLGE------- 142
IV P +++G K+G N+ L+F+ IP + +L
Sbjct: 205 IVQLRSLEDHSPLPNITVGDIGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTRE 264
Query: 143 -----PGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFG-------QPI 190
+ ++ T+ R I + A ++ A Y++ R FG +
Sbjct: 265 GEYVPSDVPKQLVYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQV 324
Query: 191 IKLQSIQQKIADMSLKLESARLLTWRAAYLKDNKQPFTKE---------------AAMAK 235
I ++ Q ++ + L SA + +LK T+ A K
Sbjct: 325 IDYKTQQNRLFPL---LASAYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLK 381
Query: 236 LAASETATYNAHQAIQI 252
+ + ++
Sbjct: 382 SLTTTATADGIEECRKL 398
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme
hydroxylase, oxidoreductase; 2.3A {Acinetobacter
baumannii} PDB: 2jbs_A* 2jbt_A*
Length = 422
Score = 131 bits (332), Expect = 4e-36
Identities = 47/335 (14%), Positives = 91/335 (27%), Gaps = 87/335 (25%)
Query: 2 LYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLG----------- 50
+ + ++ ++ A ++ P E IK + E+GL P+ G
Sbjct: 40 MLEKIQQILP-QIAKNAESAEQLRRVPDENIKLLKEIGLHRAFQPKVYGGLEMSLPDFAN 98
Query: 51 AASTVAKQDSN-GWT--------------------------------------------- 64
T+A + W
Sbjct: 99 CIVTLAGACAGTAWAFSLLCTHSHQIAMFSKQLQDEIWLKDPDATASSSIAPFGKVEEVE 158
Query: 65 ----LNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGIN 120
LNG W + +E +V + +K S ++ P + I
Sbjct: 159 GGIILNGDYGWSSGCDHAEYAIVGFNRFDADGNKIYSFGVI--PRSDYEIVDNWYAQAIK 216
Query: 121 ASSTCSLIFEDCSIPAENLLGEPGM--GFKIAMMTLDAGRI-----------GIASQALG 167
+S + L + IP + M G +I G ++ +LG
Sbjct: 217 SSGSKMLKLVNVFIPEYRISKAKDMMEGKSAGFGLYPDSKIFYTPYRPYFASGFSAVSLG 276
Query: 168 IAQASLDCAVEYASKRT--AFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLKDNK- 224
IA+ ++ E R G + +IA+ + ++ +AR L +
Sbjct: 277 IAERMIEAFKEKQRNRVRAYTGANVGLATPALMRIAESTHQVAAARALLEKTWEDHRIHG 336
Query: 225 ---QPFTKEA----AMAKLAASETATYNAHQAIQI 252
Q KE + A + + +
Sbjct: 337 LNHQYPNKETLAFWRTNQAYAVKMCIEAVDRLMAA 371
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein,
oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB:
3u33_A*
Length = 541
Score = 125 bits (316), Expect = 3e-33
Identities = 53/218 (24%), Positives = 101/218 (46%), Gaps = 23/218 (10%)
Query: 48 DLGAASTVAKQDSNG-WTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIV----- 101
D+ + +T A++ +G + L G K + + +S+A +V A T G+S F V
Sbjct: 192 DVMSNTTRAERLEDGSYRLVGHKWFFSVP-QSDAHLVLAQTAG-----GLSCFFVPRFLP 245
Query: 102 DKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGI 161
D + L + +DKLG ++++C + F+D LLG G G ++ + R
Sbjct: 246 DGQRNAIRLERLKDKLGNRSNASCEVEFQDA--IGW-LLGLEGEGIRLILKMGGMTRFDC 302
Query: 162 ASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLLTWRAAYLK 221
A + + + + A+ +A +R FG P+I+ ++ ++ M+L+LE L +R A
Sbjct: 303 ALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQPLMRHVLSRMALQLEGQTALLFRLARAW 362
Query: 222 DNKQPFTKEAAM-------AKLAASETATYNAHQAIQI 252
D ++ KEA AK + +A+++
Sbjct: 363 D-RRADAKEALWARLFTPAAKFVICKRGMPFVAEAMEV 399
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8
center, oxygnase component, 4- hydroxyphenylacetate
3-monooxygenase; 1.60A {Thermus thermophilus} PDB:
2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A*
Length = 481
Score = 123 bits (310), Expect = 1e-32
Identities = 43/224 (19%), Positives = 71/224 (31%), Gaps = 21/224 (9%)
Query: 47 EDLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTK 106
D V KQ G + G + T E + + ++ K AF + T
Sbjct: 159 PDPYIPVGVVKQTEKGIVVRGARMTATFPLADEVLIFPSILLQAGSEKYALAFALPTSTP 218
Query: 107 GLSLGKKEDKLGINAS-----------STCSLIFEDCSIPAENLL--GEPGMGFKIAMMT 153
GL +E +G ++ C +IF+D +P E + G + T
Sbjct: 219 GLHFVCREALVGGDSPFDHPLSSRVEEMDCLVIFDDVLVPWERVFILGNVELCNNAYGAT 278
Query: 154 LDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLESARLL 213
+ AL A+ + + A+ A G +Q+KIA++ + LE+ R
Sbjct: 279 GALNHMAHQVVALKTAKT--EAFLGVAA-LMAEGIGADVYGHVQEKIAEIIVYLEAMRAF 335
Query: 214 TWRAAYLKD-----NKQPFTKEAAMAKLAASETATYNAHQAIQI 252
RA P A+ QI
Sbjct: 336 WTRAEEEAKENAYGLLVPDRGALDGARNLYPRLYPRIREILEQI 379
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes,
beta-strands, lyase; HET: FAD; 1.60A {Clostridium
aminobutyricum} SCOP: a.29.3.1 e.6.1.1
Length = 490
Score = 110 bits (275), Expect = 7e-28
Identities = 30/229 (13%), Positives = 61/229 (26%), Gaps = 28/229 (12%)
Query: 47 EDLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKG-ISAFIVDKPT 105
+D + ++ +G + G KA T S ++ T ++ K +F
Sbjct: 164 KDPDLFLRIVEKREDGIVVRGAKAHQTGSINSHEHIIMPTIAMTEADKDYAVSFACPSDA 223
Query: 106 KGLSLGKKEDKLGINAS---------------STCSLIFEDCSIPAENLL--GEPGMGFK 148
GL + ++F++ IP + + E
Sbjct: 224 DGLFMIYGRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIFLCQEYDFAGM 283
Query: 149 IAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLE 208
+ R +G+ + A A K ++ K+ +M+ E
Sbjct: 284 MVERFAGYHRQSYGGCKVGVGDVVIGAA-----ALAADYNGAQKASHVKDKLIEMTHLNE 338
Query: 209 SARLLTWRAAYL-----KDNKQPFTKEAAMAKLAASETATYNAHQAIQI 252
+ + N Q A + K + A I
Sbjct: 339 TLYCCGIACSAEGYPTAAGNYQIDLLLANVCKQNITRFPYEIVRLAEDI 387
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural
genomics protein structure initiative, midwest center
for structural genomics, MCSG; HET: 1PS; 1.65A
{Rhodococcus SP} PDB: 3aff_A 3afe_A
Length = 394
Score = 106 bits (267), Expect = 6e-27
Identities = 33/216 (15%), Positives = 73/216 (33%), Gaps = 25/216 (11%)
Query: 50 GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKGLS 109
A + G+T+NG AW + + V+ K + +F++ +
Sbjct: 120 YAPMGAGQVVDGGYTVNGAWAWSSGCDHASWAVLGGPVIKDGRPVDFVSFLIPRE--DYR 177
Query: 110 LGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGR----------- 158
+ + +G+ + + +++ ED +P +L M A
Sbjct: 178 IDDVWNVVGLRGTGSNTVVVEDVFVPTHRVLSFKAMSNLTAPGLERNTAPVYKMPWGTIH 237
Query: 159 -IGIASQALGIAQASLDCAVEYASKRT---AFGQPIIKLQSIQQKIADMSLKLESARLLT 214
I++ +G+A + D VE+ KR G+ + +IA+ S +++A
Sbjct: 238 PTTISAPIVGMAYGAYDAHVEHQGKRVRAAFAGEKAKDDPFAKVRIAEASSDIDAAWRQL 297
Query: 215 WRAAYLKDNK----QPFTKEA----AMAKLAASETA 242
+ + E ++ A+ A
Sbjct: 298 SGNVADEYALLVAGEEVPFELRLRARRDQVRATGRA 333
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics,
PSI-2, protein structure initiative, midwest CENT
structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus
SP}
Length = 414
Score = 82.1 bits (203), Expect = 4e-18
Identities = 38/224 (16%), Positives = 75/224 (33%), Gaps = 23/224 (10%)
Query: 50 GAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATT--DKSKKHKGISAFIVDKPTKG 107
A VA G+ L G ++ + + + A + S ++ T
Sbjct: 133 YAPMGVATPVDGGYVLKGRWSFSSGTDHCQWAFLGAMVGDGEGGIATPSSLHVILPRTDY 192
Query: 108 LSLGKKEDKLGINASSTCSLIFEDCSIPAENLL--------------GEPGMGFKIAMMT 153
+ D +G+ + + LI + +P L G P F +
Sbjct: 193 QIVEDTWDVIGLRGTGSKDLIVDGAFVPGYRTLNAAKVMDGRAQKEAGRPEPLFNMPYSC 252
Query: 154 LDAGRIGIASQALGIAQASLDCAVEYASKRTAF-GQPIIKLQSIQQKIADMSLKLESARL 212
+ +GI + +GI + +L C + R A GQ I + + I + + ++ ++R+
Sbjct: 253 MFP--LGITAAVIGITEGALACHIAVQKDRVAITGQKIKEDPYVLSAIGESAAEINASRV 310
Query: 213 LTWRAAYLKDNK----QPFTKEAAMAKLAASETATYNAHQAIQI 252
A +K + T E A + A +A
Sbjct: 311 SLIETADRFYDKVDAGKEITFEERAIGRRTQIAAAWRAVRAADE 354
Score = 32.0 bits (73), Expect = 0.19
Identities = 11/77 (14%), Positives = 20/77 (25%), Gaps = 14/77 (18%)
Query: 18 AAKLDREHLYPKEQIKKMGELGLMGVEVPEDLG-----------AASTVAKQDSN-GWTL 65
A + + + + + G + + P G VA D GW
Sbjct: 40 AVQSEADCRLTDAAAGLLRDSGAIRLLQPRLYGGYEVHPREFAETVMGVAALDGASGWVT 99
Query: 66 N--GTKAWITNGYESEA 80
G W + +
Sbjct: 100 GIVGVHPWELAFADPQV 116
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 3e-07
Identities = 60/297 (20%), Positives = 87/297 (29%), Gaps = 121/297 (40%)
Query: 1 M---LYKTVRDFTEGELKPIAAKL-DR--EHL--------------YPKEQIKKMGELGL 40
M LYKT A + +R H P G G
Sbjct: 1631 MGMDLYKTS---------KAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFG--GE 1679
Query: 41 MGVEVPEDLGAASTVAKQDSNGWT------LNGTKAWITNGYESEATVVFAT-------- 86
G + E+ A D T +N T + SE ++ AT
Sbjct: 1680 KGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT--FRSEKGLLSATQFTQPALT 1737
Query: 87 -TDKSK----KHKGI----SAFIVDKPTKGLSLGKKE--------DKLGINASSTCSLIF 129
+K+ K KG+ + F G SLG E D + I S ++F
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFA------GHSLG--EYAALASLADVMSI--ESLVEVVF 1787
Query: 130 E-----DCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRT 184
++P E G M+ ++ GR+ A +Q +L VE KRT
Sbjct: 1788 YRGMTMQVAVPR----DELGRS-NYGMIAINPGRV-----AASFSQEALQYVVERVGKRT 1837
Query: 185 AF----------GQPII------------------KLQSIQQKIADM--SLKLESAR 211
+ Q + KLQ I I ++ SL LE
Sbjct: 1838 GWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKI--DIIELQKSLSLEEVE 1892
Score = 33.9 bits (77), Expect = 0.058
Identities = 25/129 (19%), Positives = 39/129 (30%), Gaps = 36/129 (27%)
Query: 142 EPGMG------FKIAMMTLD-AGRIGIASQALGIAQASLDCAVEYASKRTA-FGQPIIKL 193
E GMG K A + A G + LD + T FG K
Sbjct: 1628 EQGMGMDLYKTSKAAQDVWNRADN--HFKDTYGF--SILDIVINNPVNLTIHFGGE--KG 1681
Query: 194 QSIQQKIADM-----------SLKL-----ESARLLTWRAA----YLKDNKQP--FTKEA 231
+ I++ + M + K+ E + T+R+ QP E
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 232 AMAKLAASE 240
A + S+
Sbjct: 1742 AAFEDLKSK 1750
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.044
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 11/34 (32%)
Query: 188 QPIIKLQSIQQKIADMSLKL---ESARLLTWRAA 218
Q + KLQ+ SLKL +SA L +A
Sbjct: 20 QALKKLQA--------SLKLYADDSAPALAIKAT 45
Score = 29.9 bits (66), Expect = 0.42
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 15/41 (36%)
Query: 29 KEQIKKM-GELGLMGVEVPEDLGAASTVAKQDSNGWTLNGT 68
K+ +KK+ L L + +A +A + T
Sbjct: 19 KQALKKLQASLKLYA---DD---SAPALA--------IKAT 45
Score = 28.4 bits (62), Expect = 1.5
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 7/30 (23%)
Query: 224 KQPFTK-EAAMAKLAASETATYNAHQAIQI 252
KQ K +A++ KL A ++A A+ I
Sbjct: 19 KQALKKLQASL-KLYADDSAP-----ALAI 42
>2d7e_A Primosomal protein N'; inter-twined, hydrolase; 2.50A
{Escherichia coli} PDB: 2d7g_A* 2d7h_A* 2dwl_A 2dwm_A
2dwn_A*
Length = 105
Score = 29.1 bits (66), Expect = 0.58
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 8 DFTEGELKPIAAKLDREHLYPKEQIK 33
+ ELK + LD E ++ +
Sbjct: 54 ELPLNELKAVVEVLDSEPVFTHSVWR 79
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH,
RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET:
NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O
Length = 337
Score = 28.3 bits (64), Expect = 2.7
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
Query: 79 EATVVFATTDKSKKH-KG------ISAFIVDKPT--KGLSLGKKEDKLGI--NASST 124
E+T VF +K+ H KG ISA D P G++ K + I NAS T
Sbjct: 99 ESTGVFTDKEKAAAHLKGGAKKVVISAPSKDAPMFVCGVNEDKYTSDIDIVSNASCT 155
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann
fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A
{Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O*
1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A*
1gpd_G* 4gpd_1
Length = 335
Score = 28.0 bits (63), Expect = 3.0
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 79 EATVVFATTDKSKKH-KG------ISAFIVDKPT--KGLSLGKKEDKLGI--NASST 124
E+T VF T +K+ H +G ISA D P G++ K ++ L I NAS T
Sbjct: 97 ESTGVFTTMEKAGAHLQGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIISNASCT 153
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding
rossmann-fold domain, alpha and beta protein,
oxidoreductase; HET: NAD; 2.00A {Saccharomyces
cerevisiae} PDB: 2i5p_O*
Length = 332
Score = 27.9 bits (63), Expect = 3.8
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 11/57 (19%)
Query: 79 EATVVFATTDKSKKH-KG------ISAFIVDKPT--KGLSLGKKEDKLGI--NASST 124
++T VF D ++KH I+A P G++ K L I NAS T
Sbjct: 95 DSTGVFKELDTAQKHIDAGAKKVVITAPSSTAPMFVMGVNEEKYTSDLKIVSNASCT 151
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase,
structural genomics, structural genomics CON SGC,
glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB:
3pfw_O* 2vyn_D* 2vyv_D*
Length = 346
Score = 27.5 bits (62), Expect = 4.7
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 7/34 (20%)
Query: 79 EATVVFATTDKSKKH-KG------ISAFIVDKPT 105
E+T V+ + + H ISA D P
Sbjct: 100 ESTGVYLSIQAASDHISAGAQRVVISAPSPDAPM 133
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.130 0.365
Gapped
Lambda K H
0.267 0.0794 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,785,317
Number of extensions: 218168
Number of successful extensions: 680
Number of sequences better than 10.0: 1
Number of HSP's gapped: 581
Number of HSP's successfully gapped: 85
Length of query: 260
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 168
Effective length of database: 4,133,061
Effective search space: 694354248
Effective search space used: 694354248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.2 bits)