RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1215
(260 letters)
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 231
Score = 110 bits (274), Expect = 8e-30
Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 1/119 (0%)
Query: 24 EHLYPKEQIKKMGELGLMGVEVPEDLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVV 83
+ P ++K L D + T AK+ + + LNG+KA+I+ ES+ VV
Sbjct: 113 KFCPPLCTMEKFASYCLTEPGSGSDAASLLTSAKKQGDHYILNGSKAFISGAGESDIYVV 172
Query: 84 FATTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGE 142
T KGIS +V+K T GLS GKKE K+G N+ T ++IFEDC++P N +G
Sbjct: 173 MCRTG-GPGPKGISCIVVEKGTPGLSFGKKEKKVGWNSQPTRAVIFEDCAVPVANRIGS 230
Score = 54.5 bits (130), Expect = 1e-09
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLM 41
K DF E+ P A+ D++ L+P + ++K +LG
Sbjct: 16 EFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFG 56
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains
{Megasphaera elsdenii [TaxId: 907]}
Length = 232
Score = 105 bits (263), Expect = 3e-28
Identities = 52/111 (46%), Positives = 74/111 (66%), Gaps = 1/111 (0%)
Query: 33 KKMGELGLMGVEVPEDLGAASTVAKQDSNG-WTLNGTKAWITNGYESEATVVFATTDKSK 91
K+G GL D T+A ++ +G +TLNG+K +ITNG ++ +VFA TDKSK
Sbjct: 121 TKLGAFGLTEPNAGTDASGQQTIATKNDDGTYTLNGSKIFITNGGAADIYIVFAMTDKSK 180
Query: 92 KHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGE 142
+ GI+AFI++ T G + GKKEDK+GI+ S T L+F+D +PAEN+LGE
Sbjct: 181 GNHGITAFILEDGTPGFTYGKKEDKMGIHTSQTMELVFQDVKVPAENMLGE 231
Score = 45.4 bits (106), Expect = 2e-06
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGEL 38
K DF E +L P + D + +Y KE I ++ L
Sbjct: 11 DFLKLAHDFGEKKLAPTVTERDHKGIYDKELIDELLSL 48
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 231
Score = 104 bits (259), Expect = 9e-28
Identities = 73/122 (59%), Positives = 91/122 (74%)
Query: 23 REHLYPKEQIKKMGELGLMGVEVPEDLGAASTVAKQDSNGWTLNGTKAWITNGYESEATV 82
++ + P K+G L D GAAST A+++ + W LNGTKAWITN +E+ ATV
Sbjct: 110 QQWITPFTNGDKIGCFALSEPGNGSDAGAASTTAREEGDSWVLNGTKAWITNSWEASATV 169
Query: 83 VFATTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGE 142
VFA+TD+S+++KGISAF+V PT GL+LGKKEDKLGI ASST +LIFEDC IP ENLLGE
Sbjct: 170 VFASTDRSRQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGE 229
Query: 143 PG 144
PG
Sbjct: 230 PG 231
Score = 55.0 bits (131), Expect = 1e-09
Identities = 33/52 (63%), Positives = 42/52 (80%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAA 52
ML +T RDF E EL PIAA+LD+EHL+P Q+KKMGELGL+ ++VPE+L A
Sbjct: 13 MLRQTCRDFAEKELVPIAAQLDKEHLFPTSQVKKMGELGLLAMDVPEELSGA 64
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains
{Human (Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 100 bits (249), Expect = 4e-26
Identities = 46/97 (47%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDK--SKKHKGISAFIVDKPT 105
D+ + A++ N + LNG K WITNG +++ +V+A TD +GI+AFIV+K
Sbjct: 138 DVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRGITAFIVEKGM 197
Query: 106 KGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGE 142
G S KK DKLG+ S+TC LIFEDC IPA N+LG
Sbjct: 198 PGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGH 234
Score = 38.2 bits (88), Expect = 5e-04
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYP--KEQIKKMGEL 38
L +T+ F + L P A ++DR + + +E K++G L
Sbjct: 14 QLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNL 53
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM
domains {Thermus thermophilus [TaxId: 274]}
Length = 227
Score = 95.5 bits (236), Expect = 2e-24
Identities = 43/95 (45%), Positives = 57/95 (60%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKG 107
D A T A + + + LNGTK WI+NG E+E VVFAT + +HKG+ A +V++ T G
Sbjct: 132 DAAALKTRAIRQGDHYVLNGTKMWISNGGEAEWVVVFATVNPELRHKGVVALVVERGTPG 191
Query: 108 LSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGE 142
K K+G AS T L+FED +P EN LGE
Sbjct: 192 FKAIKIHGKMGQRASGTYELVFEDVKVPVENRLGE 226
Score = 44.3 bits (103), Expect = 4e-06
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLG 50
L R F + + P+A + D + P I+K+ E+GL+ +PE+ G
Sbjct: 11 QLQALARRFAKEVILPVAQEYDEKEEVPWPVIEKLHEVGLLNAIIPEEYG 60
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM
domains {Pig (Sus scrofa) [TaxId: 9823]}
Length = 231
Score = 93.9 bits (232), Expect = 8e-24
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 48 DLGAASTVAKQDSNGWTLNGTKAWITNG---YESEATVVFATTDKSKKHKGISAFIVDKP 104
D+ T A++ + + +NG K WITNG K+ K + FIV+
Sbjct: 133 DVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSDPDPKAPASKAFTGFIVEAD 192
Query: 105 TKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGE 142
T G+ +G+KE +G S T ++FED +P EN+L
Sbjct: 193 TPGVQIGRKEINMGQRCSDTRGIVFEDVRVPKENVLTG 230
Score = 43.0 bits (100), Expect = 1e-05
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPE 47
T R F E+ P+AA+ DR YP +K+ ELGLM +PE
Sbjct: 12 EFQATARKFAREEIIPVAAEYDRTGEYPVPLLKRAWELGLMNTHIPE 58
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 233
Score = 91.2 bits (225), Expect = 9e-23
Identities = 52/124 (41%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 23 REHLYPKEQIKKMGELGLMGVEVPEDLGAASTVAKQDSNGWTLNGTKAWITNGYESEATV 82
L + +G GL D A T A++ GW LNGTK +IT G + V
Sbjct: 109 EAFLPKLASGEALGAWGLTEPGSGSDAAALKTKAEKVEGGWRLNGTKQFITQGSVAGVYV 168
Query: 83 VFATTDKSK----KHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAEN 138
V A TD KH+GISAF +P +GL +G+KE+KLG+ AS T LI ED +P E
Sbjct: 169 VMARTDPPPSPERKHQGISAFAFFRPERGLKVGRKEEKLGLTASDTAQLILEDLFVPEEA 228
Query: 139 LLGE 142
LLGE
Sbjct: 229 LLGE 232
Score = 50.0 bits (118), Expect = 5e-08
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLM 41
+ R+F + E+ P AA+ DR +P + ++K+ E G+
Sbjct: 12 QVLGPFREFLKAEVAPGAAERDRTGAFPWDLVRKLAEFGVF 52
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase,
C-domain {Thermus thermophilus [TaxId: 274]}
Length = 152
Score = 88.0 bits (217), Expect = 2e-22
Identities = 53/109 (48%), Positives = 75/109 (68%)
Query: 144 GMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADM 203
G GFKIAM TL+ RI +A+ ++G+A+ +LD A +YA +R AFG+PI Q+IQ K+ DM
Sbjct: 1 GEGFKIAMQTLNKTRIPVAAGSVGVARRALDEARKYAKEREAFGEPIANFQAIQFKLVDM 60
Query: 204 SLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYNAHQAIQI 252
+ +E+AR+ T+ AA+L D P +A+AK ASE A A+QAIQI
Sbjct: 61 LIGIETARMYTYYAAWLADQGLPHAHASAIAKAYASEIAFEAANQAIQI 109
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains
1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 267
Score = 89.8 bits (222), Expect = 6e-22
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Query: 61 NGWTLNGTKAWITNGYE-SEATVVFATTDKSKKHKGISAFIVD-------KPTKGLSLGK 112
N T+ K W + S +V A + G+ AF+V KP G+++G
Sbjct: 166 NSPTVTSIKWWPGGLGKTSNHAIVLAQLITQGECYGLHAFVVPIREIGTHKPLPGITVGD 225
Query: 113 KEDKLGINASSTCSLIFEDCSIPAENLLGEPG 144
K G L ++ IP EN+L +
Sbjct: 226 IGPKFGYEEMDNGYLKMDNYRIPRENMLMKYA 257
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM
domains {Clostridium aminobutyricum [TaxId: 33953]}
Length = 275
Score = 86.2 bits (213), Expect = 1e-20
Identities = 13/103 (12%), Positives = 29/103 (28%), Gaps = 16/103 (15%)
Query: 54 TVAKQDSNGWTLNGTKAWITNGYESEATVVFATTDKS-KKHKGISAFIVDKPTKGLSLGK 112
+ ++ +G + G KA T S ++ T + +F GL +
Sbjct: 171 RIVEKREDGIVVRGAKAHQTGSINSHEHIIMPTIAMTEADKDYAVSFACPSDADGLFMIY 230
Query: 113 KEDKLGINASST---------------CSLIFEDCSIPAENLL 140
++F++ IP + +
Sbjct: 231 GRQSCDTRKMEEGADIDLGNKQFGGQEALVVFDNVFIPNDRIF 273
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 153
Score = 83.1 bits (204), Expect = 1e-20
Identities = 87/108 (80%), Positives = 95/108 (87%)
Query: 145 MGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMS 204
MGFKIAM TLD GRIGIASQALGIAQASLDCAV+YA R AFG P+ KLQ+IQ K+ADM+
Sbjct: 1 MGFKIAMQTLDMGRIGIASQALGIAQASLDCAVKYAENRHAFGAPLTKLQNIQFKLADMA 60
Query: 205 LKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYNAHQAIQI 252
L LESARLLTWRAA LKDNK+PFTKE+AMAKLAASE AT +HQAIQI
Sbjct: 61 LALESARLLTWRAAMLKDNKKPFTKESAMAKLAASEAATAISHQAIQI 108
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 153
Score = 83.1 bits (204), Expect = 2e-20
Identities = 56/109 (51%), Positives = 74/109 (67%)
Query: 144 GMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADM 203
G GF + LD GRIGIA+ A+G+ QA+LD A+ YA R AFG+PI + + + K+A+
Sbjct: 1 GKGFYDVLRVLDGGRIGIAAMAVGLGQAALDYALAYAKGREAFGRPIAEFEGVSFKLAEA 60
Query: 204 SLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYNAHQAIQI 252
+ +LE+ARLL +AA LKD +PFT EAA AKL ASE A +AIQI
Sbjct: 61 ATELEAARLLYLKAAELKDAGRPFTLEAAQAKLFASEAAVKACDEAIQI 109
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and
2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 271
Score = 83.6 bits (206), Expect = 1e-19
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 11/95 (11%)
Query: 61 NGWTLNGTKAWITNGYE-SEATVVFATTDKSKKHKGISAFIVD-------KPTKGLSLGK 112
+ T +K W + S VV+A + K GI FIV P +++G
Sbjct: 164 HTPTQTASKWWPGGLGKVSTHAVVYARLITNGKDYGIHGFIVQLRSLEDHSPLPNITVGD 223
Query: 113 KEDKLG---INASSTCSLIFEDCSIPAENLLGEPG 144
K+G N+ L+F+ IP + +L
Sbjct: 224 IGTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLS 258
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human
(Homo sapiens) [TaxId: 9606]}
Length = 236
Score = 82.8 bits (203), Expect = 1e-19
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 61 NGWTLNGTKAWITNGYESEATVVFATTDKSKKHKGISAFIVDKPTKGLSLGKKEDKLGIN 120
+TLNGTK WITN ++ VV+A + I F+++K +GLS + + K +
Sbjct: 156 KSYTLNGTKTWITNSPMADLFVVWARCE----DGCIRGFLLEKGMRGLSAPRIQGKFSLR 211
Query: 121 ASSTCSLIFEDCSIPAENLLGEPG 144
AS+T +I + +P EN+L
Sbjct: 212 ASATGMIIMDGVEVPEENVLPGAS 235
Score = 43.1 bits (100), Expect = 1e-05
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPE 47
++ T R + + L P +R ++ +E I +MGELG++G +
Sbjct: 20 LIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKG 66
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain
{Megasphaera elsdenii [TaxId: 907]}
Length = 151
Score = 80.4 bits (197), Expect = 1e-19
Identities = 60/109 (55%), Positives = 81/109 (74%)
Query: 144 GMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADM 203
G GFKIAMMTLD GRIG+A+QALGIA+A+L AVEY+ +R FG+P+ K QSI K+ADM
Sbjct: 1 GKGFKIAMMTLDGGRIGVAAQALGIAEAALADAVEYSKQRVQFGKPLCKFQSISFKLADM 60
Query: 204 SLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYNAHQAIQI 252
+++E+AR L ++AA K +PFT +AA+AK AS+ A +A+QI
Sbjct: 61 KMQIEAARNLVYKAACKKQEGKPFTVDAAIAKRVASDVAMRVTTEAVQI 109
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum
[TaxId: 5507]}
Length = 259
Score = 77.9 bits (190), Expect = 1e-17
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 20/104 (19%)
Query: 58 QDSNGWTLNGTKAWITNGYESEAT-----VVFATTD---------KSKKHKGISAFIVDK 103
+ N W ++G K W +N + V I+ +V +
Sbjct: 155 KVGNEWVISGEKLWPSNSGGWDYKGADLACVVCRVSDDPSKPQDPNVDPATQIAVLLVTR 214
Query: 104 PTKGLS------LGKKEDKLGINASSTCSLIFEDCSIPAENLLG 141
T + + + + G +S F + +P ENLL
Sbjct: 215 ETIANNKKDAYQILGEPELAGHITTSGPHTRFTEFHVPHENLLC 258
Score = 48.3 bits (113), Expect = 2e-07
Identities = 7/54 (12%), Positives = 17/54 (31%), Gaps = 6/54 (11%)
Query: 1 MLYKTVRDFTEGELKPIAAKLDRE------HLYPKEQIKKMGELGLMGVEVPED 48
+ + F L +A+ + + ++ GL+ +VP
Sbjct: 11 EARRHAQAFANTVLTKASAEYSTQKDQLSRFQATRPFYREAVRHGLIKAQVPIP 64
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3
and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 189
Score = 74.8 bits (183), Expect = 4e-17
Identities = 15/124 (12%), Positives = 37/124 (29%), Gaps = 19/124 (15%)
Query: 148 KIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFG-------QPIIKLQSIQQKI 200
++ T+ R I + A ++ A Y++ R FG +I ++ Q ++
Sbjct: 3 QLVYGTMVYVRQTIVADASNALSRAVCIATRYSAVRRQFGAHNGGIETQVIDYKTQQNRL 62
Query: 201 ADMSLKLESARLLTWRAAYLKDNK------------QPFTKEAAMAKLAASETATYNAHQ 248
+ + R + +L + A K + +
Sbjct: 63 FPLLASAYAFRFVGEWLKWLYTDVTERLAASDFATLPEAHACTAGLKSLTTTATADGIEE 122
Query: 249 AIQI 252
++
Sbjct: 123 CRKL 126
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus
[TaxId: 1912]}
Length = 210
Score = 72.5 bits (176), Expect = 5e-16
Identities = 10/54 (18%), Positives = 21/54 (38%)
Query: 91 KKHKGISAFIVDKPTKGLSLGKKEDKLGINASSTCSLIFEDCSIPAENLLGEPG 144
++ + +V T G+ + + G A+ L + +PA +L G
Sbjct: 156 QEDGSGAVVVVPADTPGVRVERVPKPSGCRAAGHADLHLDQVRVPAGAVLAGSG 209
Score = 55.5 bits (132), Expect = 6e-10
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 7 RD-FTEGELKPIAAKLDREHLYPKEQIKKMGELGLMGVEVPEDLGAASTVAKQDSNGW 63
RD + AA+ D P++ + ++G GL+ EV + G ++++
Sbjct: 2 RDALLTDLVGDRAAEWDTSGELPRDLLVRLGADGLLCAEVAAEHGGLGLGSRENGEFT 59
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase,
C-domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 154
Score = 67.3 bits (163), Expect = 1e-14
Identities = 46/109 (42%), Positives = 69/109 (63%)
Query: 144 GMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADM 203
G GFKIAM T D R +A+ A+G+AQ +LD A +YA +R FG+ + + Q I +ADM
Sbjct: 1 GAGFKIAMGTFDKTRPPVAAGAVGLAQRALDEATKYALERKTFGKLLAEHQGISFLLADM 60
Query: 204 SLKLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYNAHQAIQI 252
++K+E ARL RAA+ D+ + T A++AK A++ A A A+Q+
Sbjct: 61 AMKVELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQV 109
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 153
Score = 64.7 bits (156), Expect = 1e-13
Identities = 40/110 (36%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
Query: 144 GMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADM 203
G GF IA+ L+ GRI IAS +LG A AS+ ++ + R FG+P+ Q +Q +ADM
Sbjct: 1 GQGFLIAVRGLNGGRINIASCSLGAAHASVILTRDHLNVRKQFGEPLASNQYLQFTLADM 60
Query: 204 SLKLESARLLT-WRAAYLKDNKQPFTKEAAMAKLAASETATYNAHQAIQI 252
+ +L +ARL+ A L++ ++ +MAKL A++ +QA+Q+
Sbjct: 61 ATRLVAARLMVRNAAVALQEERKDAVALCSMAKLFATDECFAICNQALQM 110
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human
(Homo sapiens) [TaxId: 9606]}
Length = 154
Score = 64.6 bits (156), Expect = 1e-13
Identities = 30/105 (28%), Positives = 46/105 (43%)
Query: 148 KIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKL 207
L+ R GIA LG ++ L A +YA R FG P+ + Q IQ+K+ADM ++
Sbjct: 2 GGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEI 61
Query: 208 ESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYNAHQAIQI 252
+ LKD + + ++ K A A QA +
Sbjct: 62 TLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDM 106
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 151
Score = 64.3 bits (155), Expect = 1e-13
Identities = 38/107 (35%), Positives = 51/107 (47%)
Query: 146 GFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSL 205
G + M LD R+ +A LG+ QA LD + Y R AFGQ I Q +Q K+ADM
Sbjct: 2 GVYVLMSGLDLERLVLAGGPLGLMQAVLDHTIPYLHVREAFGQKIGHFQLMQGKMADMYT 61
Query: 206 KLESARLLTWRAAYLKDNKQPFTKEAAMAKLAASETATYNAHQAIQI 252
+L + R + A D K+ A L ++E AT A IQ
Sbjct: 62 RLMACRQYVYNVAKACDEGHCTAKDCAGVILYSAECATQVALDGIQC 108
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II,
domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 183
Score = 60.2 bits (145), Expect = 8e-12
Identities = 13/114 (11%), Positives = 26/114 (22%), Gaps = 19/114 (16%)
Query: 158 RIGIASQALGIAQASLDCAVEYASKRTAFG-------QPIIKLQSIQQKIADMSLKLESA 210
R + A + A+ Y++ R I+ Q+ Q K+ + +
Sbjct: 5 RSFLVGNAAQSLSKACTIAIRYSAVRRQSEIKQSEPEPQILDFQTQQYKLFPLLATAYAF 64
Query: 211 RLLTWRAAYLKDN------------KQPFTKEAAMAKLAASETATYNAHQAIQI 252
+ A K + TA +
Sbjct: 65 HFVGRYMKETYLRINESIGQGDLSELPELHALTAGLKAFTTWTANAGIEECRMA 118
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces
hygroscopicus [TaxId: 1912]}
Length = 153
Score = 56.6 bits (135), Expect = 9e-11
Identities = 22/79 (27%), Positives = 35/79 (44%)
Query: 149 IAMMTLDAGRIGIASQALGIAQASLDCAVEYASKRTAFGQPIIKLQSIQQKIADMSLKLE 208
+ +L GR +A +GI +A AV +A R FG+P+ Q + IAD+ +
Sbjct: 5 LVAASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTAEQ 64
Query: 209 SARLLTWRAAYLKDNKQPF 227
A + A+ D P
Sbjct: 65 IAARVCEYASDHWDEGSPE 83
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium
oxysporum [TaxId: 5507]}
Length = 170
Score = 54.5 bits (130), Expect = 7e-10
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 141 GEPGMGFKIAMMTLDAGRIGIASQALGIAQASLDCAVEYA-SKRTAFGQPIIKLQSIQQK 199
G G + + A+G A+A+ + A+ +A S + II+ QS+ K
Sbjct: 2 GLKAQGL--VETAFAMSAALVGAMAIGTARAAFEEALVFAKSDTRGGSKHIIEHQSVADK 59
Query: 200 IADMSLKLESARLLTWRAAYLKDNK----QPFTKEAAMAKLAASETATYNAHQAIQI 252
+ D ++LE++RLL W+A +++ + + A K+ ++ A A++
Sbjct: 60 LIDCKIRLETSRLLVWKAVTTLEDEALEWKVKLEMAMQTKIYTTDVAVECVIDAMKA 116
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium
janthinellum), penicillopepsin [TaxId: 5079]}
Length = 323
Score = 27.3 bits (59), Expect = 2.0
Identities = 10/44 (22%), Positives = 19/44 (43%)
Query: 122 SSTCSLIFEDCSIPAENLLGEPGMGFKIAMMTLDAGRIGIASQA 165
STC + S ++ G+ + + + D ++G A QA
Sbjct: 280 GSTCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQA 323
>g1htr.1 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens),
progastricsin (pepsinogen C) [TaxId: 9606]}
Length = 372
Score = 26.5 bits (57), Expect = 4.2
Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 119 INASSTCSLIFEDCSIPAEN-----LLGEPGMGFKIAMMTLDAGRIGIASQA 165
++ + C++ E + ++N +LG+ + ++ L R+G A+ A
Sbjct: 321 LSNNGYCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATAA 372
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.130 0.365
Gapped
Lambda K H
0.267 0.0429 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 883,502
Number of extensions: 37875
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 39
Length of query: 260
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 177
Effective length of database: 1,268,006
Effective search space: 224437062
Effective search space used: 224437062
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)