BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12150
(456 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|193702269|ref|XP_001948634.1| PREDICTED: replication factor C subunit 4-like [Acyrthosiphon
pisum]
Length = 359
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/325 (63%), Positives = 254/325 (78%), Gaps = 6/325 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGK--TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLK 58
M++FL+TGK+ +D S+S S G N PWVEKYRP+T+D+V EQ E+V+VLK
Sbjct: 1 MDSFLKTGKINQDQQSTSSGLKSKDGSRGISNSTTPWVEKYRPRTVDEVSEQSEIVAVLK 60
Query: 59 KCL-SGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKV 117
+CL GAD+PH LFYGPPGTGKTST+IAA QLFGDMY+ R+LELNASDDRGIQVIRDKV
Sbjct: 61 QCLEQGADMPHLLFYGPPGTGKTSTIIAAARQLFGDMYKNRMLELNASDDRGIQVIRDKV 120
Query: 118 KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYV 177
KTFAQ TAS DGKPCPPFKIV+LDEADSMT AQAALRRT+E+ETK+TRFCLICNYV
Sbjct: 121 KTFAQLTASDRRPDGKPCPPFKIVVLDEADSMTAPAQAALRRTIERETKTTRFCLICNYV 180
Query: 178 SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAIT 237
SCII PLTSRCSKFRFKPL+ MLTRL++IC++E V C + L LV+ SGGDMRRAIT
Sbjct: 181 SCIIDPLTSRCSKFRFKPLSHEIMLTRLEHICKEEGVKCAPRVLARLVDASGGDMRRAIT 240
Query: 238 CLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEAYSA 294
LQS ARLKG GI DVLEV G +P W+++++ ++ +Q ++ ++EDLI EAYSA
Sbjct: 241 SLQSTARLKGEVGIEEVDVLEVVGTVPDIWLDRMIDMGRMYDYQKMDGFVEDLIFEAYSA 300
Query: 295 TQLFDQFHDIVMLASSLSDKQKALF 319
+Q+ +Q HD ++ ++ L D QKA+
Sbjct: 301 SQILEQLHDKIVFSTDLKDNQKAII 325
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 96/137 (70%), Gaps = 3/137 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
+ L LV+ SGGDMRRAIT LQS ARLKG GI DVLEV G +P+ W+++++ ++
Sbjct: 222 RVLARLVDASGGDMRRAITSLQSTARLKGEVGIEEVDVLEVVGTVPDIWLDRMIDMGRMY 281
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+Q ++ ++EDLI EAYSA+Q+ +Q HD ++ ++ L D QKA+I + ++ C RLQ+G S
Sbjct: 282 DYQKMDGFVEDLIFEAYSASQILEQLHDKIVFSTDLKDNQKAIICKSISICAYRLQEGCS 341
Query: 437 EYIQILDLGSIVIKANK 453
EY+ +L+L V KA K
Sbjct: 342 EYVTLLNLLCSVAKALK 358
>gi|91081833|ref|XP_974716.1| PREDICTED: similar to replication factor C, 37-kDa subunit,
putative [Tribolium castaneum]
gi|270006308|gb|EFA02756.1| hypothetical protein TcasGA2_TC008489 [Tribolium castaneum]
Length = 355
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/322 (63%), Positives = 254/322 (78%), Gaps = 7/322 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL++GKL S S+ ++K VPWVEKYRP+T+ DV+EQ E VSVL++C
Sbjct: 1 MQAFLKSGKLDN---SDKSVPSSSKTSKKSKAVPWVEKYRPRTVSDVVEQSEAVSVLQQC 57
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+SGADLP+ LFYGPPGTGKTST++AA QLFGD YR+RILELNASD+RGIQVIRDKVKTF
Sbjct: 58 ISGADLPNLLFYGPPGTGKTSTILAAARQLFGDYYRDRILELNASDERGIQVIRDKVKTF 117
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
AQ TASG DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE++STRFCLICNYVS I
Sbjct: 118 AQLTASGTRPDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKESRSTRFCLICNYVSRI 177
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I+PLTSRC+KFRFKPL E +L RL +IC +E+V C K L LVETSGGDMRRAIT LQ
Sbjct: 178 IEPLTSRCTKFRFKPLNEAMILERLSFICGKENVECSDKTLAALVETSGGDMRRAITSLQ 237
Query: 241 SCARLKG-GEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQ 296
SCA+LKG G I +DVLEVTGV+P+ W++K L K L+ ++++++ EAY+A+Q
Sbjct: 238 SCAKLKGSGVPISIDDVLEVTGVVPERWLKKFLDVCKTKDQNKLQAFLKEMMFEAYAASQ 297
Query: 297 LFDQFHDIVMLASSLSDKQKAL 318
+ +Q + ++ +D+QKA+
Sbjct: 298 ILEQLNQYIVNFEGFTDQQKAI 319
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/136 (49%), Positives = 97/136 (71%), Gaps = 4/136 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKG-GEGIVNEDVLEVTGVIPNPWIEKLL---KV 375
K L LVETSGGDMRRAIT LQSCA+LKG G I +DVLEVTGV+P W++K L K
Sbjct: 216 KTLAALVETSGGDMRRAITSLQSCAKLKGSGVPISIDDVLEVTGVVPERWLKKFLDVCKT 275
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
L+ ++++++ EAY+A+Q+ +Q + +++ +D+QKA+I +KL + +LQDG
Sbjct: 276 KDQNKLQAFLKEMMFEAYAASQILEQLNQYIVNFEGFTDQQKAIIGQKLGVVSFKLQDGG 335
Query: 436 SEYIQILDLGSIVIKA 451
SE+IQ+LDLG +I+A
Sbjct: 336 SEFIQLLDLGCSIIRA 351
>gi|195038153|ref|XP_001990525.1| GH18198 [Drosophila grimshawi]
gi|193894721|gb|EDV93587.1| GH18198 [Drosophila grimshawi]
Length = 356
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 190/323 (58%), Positives = 252/323 (78%), Gaps = 4/323 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AF + GK ++ K +++ + + R P PWVEKYRP+++DDV+EQ EVV+VL+KC
Sbjct: 1 MQAFFKPGKANIGNSATDKQTINATAERRKPPAPWVEKYRPRSVDDVVEQSEVVAVLRKC 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ GADLP+ L YGPPGTGKTST++AA Q+FGDMYRERILELNASD+RGI V+R K+K F
Sbjct: 61 VEGADLPNMLLYGPPGTGKTSTILAAARQIFGDMYRERILELNASDERGINVVRTKIKNF 120
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
AQ TAS DG+PCPPFKI++LDEADSMTHAAQAALRRTMEKE++STRFCLICNYVS I
Sbjct: 121 AQLTASSVRPDGRPCPPFKIIVLDEADSMTHAAQAALRRTMEKESRSTRFCLICNYVSRI 180
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I P+TSRCSKFRFK L E ++TRLQ+IC+ ESV + A +++V+ SGGDMRRAIT LQ
Sbjct: 181 IVPITSRCSKFRFKALGETQIITRLQHICDLESVSIEPDAYQSIVKISGGDMRRAITTLQ 240
Query: 241 SCARLKGGEGIVN-EDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
SC RLKG E +N +D+LE++G+IP+ +++ L+V +++ LE ++ ++ AYS Q
Sbjct: 241 SCYRLKGAEHTINSDDLLEMSGIIPEHYLDDYLEVCRSGNYERLEHFVREIGYSAYSVGQ 300
Query: 297 LFDQFHDIVMLASSLSDKQKALF 319
+ +QF + V+ SL+DKQKA+
Sbjct: 301 MMEQFVEYVVRCGSLTDKQKAII 323
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/137 (48%), Positives = 98/137 (71%), Gaps = 4/137 (2%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPNPWIEKLLKV---D 376
A +++V+ SGGDMRRAIT LQSC RLKG E +N +D+LE++G+IP +++ L+V
Sbjct: 220 AYQSIVKISGGDMRRAITTLQSCYRLKGAEHTINSDDLLEMSGIIPEHYLDDYLEVCRSG 279
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+++ LE ++ ++ AYS Q+ +QF + V+ SL+DKQKA+I +KL EC RLQDG S
Sbjct: 280 NYERLEHFVREIGYSAYSVGQMMEQFVEYVVRCGSLTDKQKAIICDKLGECCYRLQDGGS 339
Query: 437 EYIQILDLGSIVIKANK 453
EY+QI+DLG +I A K
Sbjct: 340 EYLQIMDLGCTIILALK 356
>gi|195389432|ref|XP_002053381.1| GJ23369 [Drosophila virilis]
gi|194151467|gb|EDW66901.1| GJ23369 [Drosophila virilis]
Length = 356
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 192/323 (59%), Positives = 248/323 (76%), Gaps = 4/323 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+TGK S+ K + + + R P PWVEKYRP+++DDV+EQ EVV+VL+KC
Sbjct: 1 MQAFLKTGKSSSGNSSTDKQATNAPTERRKPPAPWVEKYRPRSVDDVVEQSEVVAVLRKC 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ GADLP+ L YGPPGTGKTST++AA Q+FGDMYR+RILELNASD+RGI V+R K+K F
Sbjct: 61 VEGADLPNMLLYGPPGTGKTSTILAAARQIFGDMYRDRILELNASDERGINVVRTKIKNF 120
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
AQ TAS DG+ CPPFKI++LDEADSMTHAAQAALRRTMEKE++STRFCLICNYVS I
Sbjct: 121 AQLTASNVRPDGRSCPPFKIIVLDEADSMTHAAQAALRRTMEKESRSTRFCLICNYVSRI 180
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I P+TSRCSKFRFK L E ++ RLQ+ICE E V D A +++V SGGDMRRAIT LQ
Sbjct: 181 IVPITSRCSKFRFKALGETQIIARLQHICELEGVRIDPDAYKSIVRISGGDMRRAITTLQ 240
Query: 241 SCARLKGGEGIVN-EDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
SC RLKG E +N +D+LE++G+IP+ ++E L+V +++ LE ++ ++ AYS Q
Sbjct: 241 SCYRLKGAEHTINTDDLLEMSGIIPEHYLEDYLEVCRSGNYERLEHFVREIGYSAYSVGQ 300
Query: 297 LFDQFHDIVMLASSLSDKQKALF 319
+ DQF + ++ SL+DKQKA+
Sbjct: 301 MMDQFVEFIVRCGSLTDKQKAII 323
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 106/169 (62%), Gaps = 9/169 (5%)
Query: 289 LEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKG 348
+A TQ+ + I L D A +++V SGGDMRRAIT LQSC RLKG
Sbjct: 193 FKALGETQIIARLQHICELEGVRIDPD-----AYKSIVRISGGDMRRAITTLQSCYRLKG 247
Query: 349 GEGIVN-EDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHD 404
E +N +D+LE++G+IP ++E L+V +++ LE ++ ++ AYS Q+ DQF +
Sbjct: 248 AEHTINTDDLLEMSGIIPEHYLEDYLEVCRSGNYERLEHFVREIGYSAYSVGQMMDQFVE 307
Query: 405 IVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANK 453
++ SL+DKQKA+I +KL EC RLQDG SEY+QI+DLG +I A K
Sbjct: 308 FIVRCGSLTDKQKAIICDKLGECCYRLQDGGSEYLQIMDLGCTIILALK 356
>gi|170030843|ref|XP_001843297.1| replication factor C subunit 4 [Culex quinquefasciatus]
gi|167868416|gb|EDS31799.1| replication factor C subunit 4 [Culex quinquefasciatus]
Length = 355
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/321 (61%), Positives = 249/321 (77%), Gaps = 7/321 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M AF +TGK G D + V KT + VPWVEKYRPK +DDV+EQ EVV+VL++
Sbjct: 1 MHAFFKTGKAG-DTTTGDGQPVEKRSKTHS--VPWVEKYRPKNVDDVVEQGEVVAVLRES 57
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
LS ADLP+ L YGPPGTGKTST++AA QLFGDM++ERILELNASDDRGI VIR+KVKTF
Sbjct: 58 LSTADLPNLLLYGPPGTGKTSTILAAARQLFGDMFKERILELNASDDRGIAVIRNKVKTF 117
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
AQ ASG DGKPCPPFKIVILDEAD+MTHAAQAALRRTMEKETK+TRFCL+CNYVS I
Sbjct: 118 AQLAASGTRPDGKPCPPFKIVILDEADAMTHAAQAALRRTMEKETKTTRFCLVCNYVSRI 177
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I+P+TSRC+KFRFKPL + ++ RL++IC+QE+V + +A + +V+ SGGD+RRAIT LQ
Sbjct: 178 IEPITSRCTKFRFKPLRQEKIIERLRFICDQETVEVEDQAYQDIVDISGGDLRRAITTLQ 237
Query: 241 SCARLKGGEG-IVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQ 296
SC RLKG E I + D+LE++GV+P+ ++E + K ++ LE Y++ L +AYS Q
Sbjct: 238 SCHRLKGKEAKIEHSDILEMSGVVPRKYLEDFVSVCKTSNYSKLEDYVKGLTHDAYSVGQ 297
Query: 297 LFDQFHDIVMLASSLSDKQKA 317
LF+Q D +++ L+DKQK+
Sbjct: 298 LFEQLTDFIIMHEGLTDKQKS 318
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 93/136 (68%), Gaps = 4/136 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEG-IVNEDVLEVTGVIPNPWIEKLL---KV 375
+A + +V+ SGGD+RRAIT LQSC RLKG E I + D+LE++GV+P ++E + K
Sbjct: 216 QAYQDIVDISGGDLRRAITTLQSCHRLKGKEAKIEHSDILEMSGVVPRKYLEDFVSVCKT 275
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
++ LE Y++ L +AYS QLF+Q D ++ L+DKQK+ I +K+ +C RLQ G
Sbjct: 276 SNYSKLEDYVKGLTHDAYSVGQLFEQLTDFIIMHEGLTDKQKSTICDKIGDCCFRLQGGG 335
Query: 436 SEYIQILDLGSIVIKA 451
SEYIQI+DLG + I+A
Sbjct: 336 SEYIQIMDLGCVTIQA 351
>gi|157167248|ref|XP_001652243.1| replication factor C, 37-kDa subunit, putative [Aedes aegypti]
gi|94469174|gb|ABF18436.1| replication factor C [Aedes aegypti]
gi|108877369|gb|EAT41594.1| AAEL006788-PA [Aedes aegypti]
Length = 358
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/324 (62%), Positives = 257/324 (79%), Gaps = 6/324 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGK-TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKK 59
M AFL+TGK+ D+PS + S +S K T+ VPWVEKYRPK++DDV+EQ EVV+VL++
Sbjct: 1 MHAFLKTGKIS-DSPSKAGPSDGSSEKRTKTHSVPWVEKYRPKSVDDVVEQAEVVAVLRE 59
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119
LS ADLP+ L YGPPGTGKTST++AA QLFGDM++ERILELNASDDRGI VIR+KVKT
Sbjct: 60 SLSTADLPNLLLYGPPGTGKTSTILAAARQLFGDMFKERILELNASDDRGIAVIRNKVKT 119
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ TASG DGKPCPPFKIVILDEAD+MTHAAQAALRRTMEKETK+TRFCL+CNYVS
Sbjct: 120 FAQLTASGTRTDGKPCPPFKIVILDEADAMTHAAQAALRRTMEKETKTTRFCLVCNYVSR 179
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+P+TSRC+KFRFKPL E ++ RL++ICEQE+V + +A +V+ SGGD+RRAIT L
Sbjct: 180 IIEPITSRCTKFRFKPLGEEKVIERLRFICEQENVDVEDQAYREIVDISGGDLRRAITTL 239
Query: 240 QSCARLKGGEG-IVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEAYSAT 295
QSC RLKG E I + D+LE++GV+P+ ++E + K ++ LE Y+ +L +AYS
Sbjct: 240 QSCHRLKGKEAKIQHTDILEMSGVVPRKYLEDFVSVCKTANYGKLEDYVRNLTYDAYSVG 299
Query: 296 QLFDQFHDIVMLASSLSDKQKALF 319
QLF+Q + V+L LSDKQK++
Sbjct: 300 QLFEQLTEFVVLHDGLSDKQKSII 323
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/136 (49%), Positives = 93/136 (68%), Gaps = 4/136 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEG-IVNEDVLEVTGVIPNPWIEKLL---KV 375
+A +V+ SGGD+RRAIT LQSC RLKG E I + D+LE++GV+P ++E + K
Sbjct: 219 QAYREIVDISGGDLRRAITTLQSCHRLKGKEAKIQHTDILEMSGVVPRKYLEDFVSVCKT 278
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
++ LE Y+ +L +AYS QLF+Q + V+ LSDKQK++I +KL EC RLQ G
Sbjct: 279 ANYGKLEDYVRNLTYDAYSVGQLFEQLTEFVVLHDGLSDKQKSIICDKLGECCFRLQGGG 338
Query: 436 SEYIQILDLGSIVIKA 451
SEYIQI+DLG + I+A
Sbjct: 339 SEYIQIMDLGCVTIQA 354
>gi|156550041|ref|XP_001605078.1| PREDICTED: replication factor C subunit 4-like [Nasonia
vitripennis]
Length = 358
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/321 (61%), Positives = 249/321 (77%), Gaps = 4/321 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M AFL+TGKLG TS R K PWVEKYRPKT++DV+EQ EVV VL++C
Sbjct: 1 MHAFLKTGKLGAAEAKKPSTSKGKESNARAKATPWVEKYRPKTVEDVVEQGEVVEVLRQC 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
LSG D P+ L YGPPGTGKTST++AA QLFG M++ERILELNASD+RGIQV+R+KVK F
Sbjct: 61 LSGGDFPNLLLYGPPGTGKTSTILAAARQLFGSMFKERILELNASDERGIQVVREKVKKF 120
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
AQ TA DGKPCPPFKI+ILDEADSMT AAQ+ALRRTMEKE+++TRFCLICNYVS I
Sbjct: 121 AQLTAGNTRPDGKPCPPFKIIILDEADSMTDAAQSALRRTMEKESQTTRFCLICNYVSRI 180
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I+PLTSRC+KFRFKPL E ++ RL+YIC +E + + L+ +V+ SGGD+RRAITCLQ
Sbjct: 181 IEPLTSRCTKFRFKPLGEEKIIERLEYICGEEDLKAEKSVLKLVVDASGGDLRRAITCLQ 240
Query: 241 SCARLKG-GEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
S RLKG G + N DVLEVTGV+P W++ LL+V ++ +E Y++ +LEAYSA+Q
Sbjct: 241 SVTRLKGIGIEVTNNDVLEVTGVVPTKWLDDLLRVCETKNYNEVEAYVDKFMLEAYSASQ 300
Query: 297 LFDQFHDIVMLASSLSDKQKA 317
+ DQ +DIV+ +++L+DKQKA
Sbjct: 301 VVDQLNDIVIYSNTLTDKQKA 321
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 71/140 (50%), Positives = 101/140 (72%), Gaps = 4/140 (2%)
Query: 316 KALFKALETLVETSGGDMRRAITCLQSCARLKG-GEGIVNEDVLEVTGVIPNPWIEKLLK 374
KA L+ +V+ SGGD+RRAITCLQS RLKG G + N DVLEVTGV+P W++ LL+
Sbjct: 215 KAEKSVLKLVVDASGGDLRRAITCLQSVTRLKGIGIEVTNNDVLEVTGVVPTKWLDDLLR 274
Query: 375 V---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 431
V ++ +E Y++ +LEAYSA+Q+ DQ +DIV+ +++L+DKQKA I EKL EC+ RL
Sbjct: 275 VCETKNYNEVEAYVDKFMLEAYSASQVVDQLNDIVIYSNTLTDKQKAYIGEKLGECSYRL 334
Query: 432 QDGASEYIQILDLGSIVIKA 451
+G SEY+Q + L +++A
Sbjct: 335 LEGGSEYVQFMSLCCGIMQA 354
>gi|346471367|gb|AEO35528.1| hypothetical protein [Amblyomma maculatum]
Length = 358
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/322 (60%), Positives = 240/322 (74%), Gaps = 8/322 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPV--PWVEKYRPKTIDDVIEQQEVVSVLK 58
M AFL++ P K S +T KPV PWVEKYRPKT+DDV Q EVVSVLK
Sbjct: 1 MHAFLKSANPNLAFP---KEKTKESKQTAKKPVHIPWVEKYRPKTVDDVAHQDEVVSVLK 57
Query: 59 KCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVK 118
K L GADLP+ LFYGPPGTGKTST++A +LFGDMY+ RILELNASD+RGIQV+R+K+K
Sbjct: 58 KSLQGADLPNLLFYGPPGTGKTSTILALARELFGDMYKSRILELNASDERGIQVVREKIK 117
Query: 119 TFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS 178
TF+Q TA DGKPCPPFKIVILDEADSMT +AQAALRRTMEKETKSTRFCLICNY+S
Sbjct: 118 TFSQLTAHAVGPDGKPCPPFKIVILDEADSMTASAQAALRRTMEKETKSTRFCLICNYIS 177
Query: 179 CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITC 238
II PLTSRCSKFRFKPL + +L RL+ IC E V C+ + L+ L++ GDMRRAIT
Sbjct: 178 RIIDPLTSRCSKFRFKPLPKEVLLERLRSICTAEGVQCEDEVLDFLMDACEGDMRRAITL 237
Query: 239 LQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEAYSAT 295
QS +RLK E + + DV EV G+I K WI+ LL +S++ L +EDL+LE ++A+
Sbjct: 238 FQSVSRLKCDEPVTSHDVAEVAGIISKKWIDDLLASCASNSYEKLSATVEDLVLEGFAAS 297
Query: 296 QLFDQFHDIVMLASSLSDKQKA 317
QLF Q HD ++L+++ +DKQK+
Sbjct: 298 QLFSQLHDTIVLSTNYNDKQKS 319
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/128 (46%), Positives = 88/128 (68%), Gaps = 3/128 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+ L+ L++ GDMRRAIT QS +RLK E + + DV EV G+I WI+ LL +
Sbjct: 218 EVLDFLMDACEGDMRRAITLFQSVSRLKCDEPVTSHDVAEVAGIISKKWIDDLLASCASN 277
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
S++ L +EDL+LE ++A+QLF Q HD ++ +++ +DKQK+ I EKLA C+ RL +GA
Sbjct: 278 SYEKLSATVEDLVLEGFAASQLFSQLHDTIVLSTNYNDKQKSAITEKLAICDHRLLEGAD 337
Query: 437 EYIQILDL 444
EY+QI+DL
Sbjct: 338 EYLQIMDL 345
>gi|195111460|ref|XP_002000296.1| GI10150 [Drosophila mojavensis]
gi|193916890|gb|EDW15757.1| GI10150 [Drosophila mojavensis]
Length = 354
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 187/323 (57%), Positives = 249/323 (77%), Gaps = 6/323 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+ GK ++ K + + + R P PWVEKYRP++++DV+EQ EVV+VL+KC
Sbjct: 1 MQAFLKAGKSANG--TTEKQASNAPTERRKPPAPWVEKYRPRSVEDVVEQSEVVAVLRKC 58
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ GADLP+ L YGPPGTGKTST++AA Q+FGDMYR+RILELNASD+RGI V+R K+K F
Sbjct: 59 VEGADLPNMLLYGPPGTGKTSTILAAARQIFGDMYRDRILELNASDERGINVVRTKIKNF 118
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
AQ TAS DG+PCPPFKI++LDEADSMTHAAQAALRRTMEKE++STRFCLICNYVS I
Sbjct: 119 AQLTASNVRPDGRPCPPFKIIVLDEADSMTHAAQAALRRTMEKESRSTRFCLICNYVSRI 178
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I P+TSRCSKFRFK L E ++ RL++IC QE+V D A +++V+ SGGDMRRAIT LQ
Sbjct: 179 IVPITSRCSKFRFKALGETQIIARLKHICMQENVNIDPDAYKSIVKISGGDMRRAITTLQ 238
Query: 241 SCARLKGGEGIVN-EDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
SC RLKG + +N +D+LE++G+IP+ ++E L+V ++ LE ++ ++ AYS Q
Sbjct: 239 SCYRLKGSDHTINTDDLLEMSGIIPEHYLEDYLEVCRSGKYERLEHFVREIGYSAYSVGQ 298
Query: 297 LFDQFHDIVMLASSLSDKQKALF 319
+ +QF + ++ SL+DKQKA+
Sbjct: 299 MMEQFVEFIVRCGSLTDKQKAII 321
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 107/169 (63%), Gaps = 9/169 (5%)
Query: 289 LEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKG 348
+A TQ+ + I M + D A +++V+ SGGDMRRAIT LQSC RLKG
Sbjct: 191 FKALGETQIIARLKHICMQENVNIDPD-----AYKSIVKISGGDMRRAITTLQSCYRLKG 245
Query: 349 GEGIVN-EDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHD 404
+ +N +D+LE++G+IP ++E L+V ++ LE ++ ++ AYS Q+ +QF +
Sbjct: 246 SDHTINTDDLLEMSGIIPEHYLEDYLEVCRSGKYERLEHFVREIGYSAYSVGQMMEQFVE 305
Query: 405 IVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANK 453
++ SL+DKQKA+I +KL EC RLQDG SEY+QI+DLG +I A K
Sbjct: 306 FIVRCGSLTDKQKAIICDKLGECCYRLQDGGSEYLQIMDLGCTIILALK 354
>gi|427779307|gb|JAA55105.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 392
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 189/292 (64%), Positives = 232/292 (79%), Gaps = 5/292 (1%)
Query: 31 KPV--PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
KPV PWVEKYRPKT+DDV Q EVVSVLKK L GADLP+ LFYGPPGTGKTST++A
Sbjct: 62 KPVQIPWVEKYRPKTVDDVAHQDEVVSVLKKSLQGADLPNLLFYGPPGTGKTSTILALAR 121
Query: 89 QLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADS 148
+LFGDMY+ RILELNASD+RGIQV+R+K+KTF+Q TASG DGKPCPP+KIVILDEADS
Sbjct: 122 ELFGDMYKSRILELNASDERGIQVVREKIKTFSQLTASGTGPDGKPCPPYKIVILDEADS 181
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT +AQAALRRTMEKETK+TRFCLICNY+S II PLTSRCSKFRFKPL ++ +L RL+ I
Sbjct: 182 MTASAQAALRRTMEKETKTTRFCLICNYISRIIDPLTSRCSKFRFKPLPKDILLERLRNI 241
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWI 268
C E+V CD + L+ L++ GDMRRAIT QS +RLK E + +EDV EV G+IP W+
Sbjct: 242 CTAEAVQCDDQVLDFLMDACEGDMRRAITLFQSVSRLKCNEQVTSEDVAEVAGIIPNQWV 301
Query: 269 EKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
+ LL +S++ L +EDL+LE ++A+QLF Q HD ++L++ DKQK+
Sbjct: 302 DGLLTSCASNSYEKLSATVEDLVLEGFAASQLFSQLHDAIVLSNKYDDKQKS 353
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 89/128 (69%), Gaps = 3/128 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
+ L+ L++ GDMRRAIT QS +RLK E + +EDV EV G+IPN W++ LL +
Sbjct: 252 QVLDFLMDACEGDMRRAITLFQSVSRLKCNEQVTSEDVAEVAGIIPNQWVDGLLTSCASN 311
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
S++ L +EDL+LE ++A+QLF Q HD ++ ++ DKQK+ I EKLA C+ RL +GA
Sbjct: 312 SYEKLSATVEDLVLEGFAASQLFSQLHDAIVLSNKYDDKQKSAIAEKLAICDHRLLEGAD 371
Query: 437 EYIQILDL 444
EY+QI+DL
Sbjct: 372 EYLQIMDL 379
>gi|357617013|gb|EHJ70534.1| replication factor C4 [Danaus plexippus]
Length = 350
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 190/321 (59%), Positives = 248/321 (77%), Gaps = 8/321 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNK-PVPWVEKYRPKTIDDVIEQQEVVSVLKK 59
M+AFL+TGK+ S+ K S S T+ K P PWVEKYRPKTIDD+++Q EVV VL++
Sbjct: 1 MQAFLKTGKIS----STDKPSTSGVKSTKKKAPAPWVEKYRPKTIDDIVDQGEVVQVLRE 56
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119
CL+G DLPH LFYGPPGTGKTS ++AA QLFGD+ RER+LELNASD+RGIQVIRDKVKT
Sbjct: 57 CLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDITRERVLELNASDERGIQVIRDKVKT 116
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ T S DG+PCPP+K+VILDEADSMT AAQAALRRTME+ET++TRFCLICNYVS
Sbjct: 117 FAQLTVSNTRPDGRPCPPYKLVILDEADSMTTAAQAALRRTMERETRTTRFCLICNYVSR 176
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV-MCDFKALETLVETSGGDMRRAITC 238
II P+TSRCSKFRFKPLA ++ RLQ +C+ E+V + D + L V+T GGD+RRA+T
Sbjct: 177 IIPPITSRCSKFRFKPLARENVIKRLQEVCKSEAVEVGDGEVLHQAVDTCGGDLRRALTA 236
Query: 239 LQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLF 298
LQ C RL G I + ++EVTG++P+ +++ L V ++ LE+++E+ +++AYSA+QL
Sbjct: 237 LQCCQRLLG--KITADGLIEVTGLVPENLVDEFLNVKNYNELERFVENFLMDAYSASQLL 294
Query: 299 DQFHDIVMLASSLSDKQKALF 319
+Q + V+ A L++KQK +
Sbjct: 295 EQLSERVVNAGHLTNKQKCVI 315
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 92/135 (68%), Gaps = 2/135 (1%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQ 379
+ L V+T GGD+RRA+T LQ C RL G I + ++EVTG++P +++ L V ++
Sbjct: 217 EVLHQAVDTCGGDLRRALTALQCCQRLLGK--ITADGLIEVTGLVPENLVDEFLNVKNYN 274
Query: 380 VLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYI 439
LE+++E+ +++AYSA+QL +Q + V++A L++KQK +I EKLA C+ RL +G +E +
Sbjct: 275 ELERFVENFLMDAYSASQLLEQLSERVVNAGHLTNKQKCVISEKLAVCSHRLLEGGAEVM 334
Query: 440 QILDLGSIVIKANKT 454
Q+ DLG VI AN
Sbjct: 335 QLTDLGCTVIMANNN 349
>gi|242024266|ref|XP_002432549.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212518009|gb|EEB19811.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 360
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 199/323 (61%), Positives = 242/323 (74%), Gaps = 6/323 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSV-STSGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVSVLK 58
ME FL+TGKLG ++ SS + S GK N +PWVEKYRPKT+DD++EQ EVVSVL+
Sbjct: 1 MEGFLKTGKLGNNSNISSISKTDSLKGKEENYSNIPWVEKYRPKTVDDIVEQVEVVSVLR 60
Query: 59 KCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVK 118
+ L GADLP+ LFYGPPGTGKTST++AA QLFGDM++ERILELNASDDRGIQVIRDKVK
Sbjct: 61 QTLKGADLPNLLFYGPPGTGKTSTILAAARQLFGDMFKERILELNASDDRGIQVIRDKVK 120
Query: 119 TFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS 178
TFAQ +AS DG+PCPPFKIV+LDEADSMT AAQAALRRTME TK+TRFCL+CNYVS
Sbjct: 121 TFAQLSASSTRPDGQPCPPFKIVLLDEADSMTSAAQAALRRTMELYTKTTRFCLVCNYVS 180
Query: 179 CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITC 238
II P+TSRCSKFRFKPL EN + RL I + E V + L TLV+ +GGD+RRAIT
Sbjct: 181 RIIPPITSRCSKFRFKPLGENKIFERLSKISKAEKVNINDDTLMTLVKCTGGDLRRAITS 240
Query: 239 LQSCARLK-GGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSA 294
LQSCAR+K GE I EDV EV GVIP I +L+ +++ +E ++ ++ +AYS
Sbjct: 241 LQSCARIKEEGELITIEDVNEVAGVIPDSVITELINTCNKNNYTTIEDFVNEVTYQAYSV 300
Query: 295 TQLFDQFHDIVMLASSLSDKQKA 317
QL +Q + ++ LSDK KA
Sbjct: 301 AQLMEQLTEYIIQDFKLSDKAKA 323
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 90/134 (67%), Gaps = 4/134 (2%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKG-GEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
L TLV+ +GGD+RRAIT LQSCAR+K GE I EDV EV GVIP+ I +L+ ++
Sbjct: 223 LMTLVKCTGGDLRRAITSLQSCARIKEEGELITIEDVNEVAGVIPDSVITELINTCNKNN 282
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
+ +E ++ ++ +AYS QL +Q + ++ LSDK KA I +KL+ C++RL DGASE
Sbjct: 283 YTTIEDFVNEVTYQAYSVAQLMEQLTEYIIQDFKLSDKAKATIFDKLSLCSSRLIDGASE 342
Query: 438 YIQILDLGSIVIKA 451
Y+ ++DL + KA
Sbjct: 343 YLLLIDLCCTIAKA 356
>gi|241829143|ref|XP_002414742.1| replication factor C, subunit RFC4, putative [Ixodes scapularis]
gi|215508954|gb|EEC18407.1| replication factor C, subunit RFC4, putative [Ixodes scapularis]
Length = 363
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/325 (58%), Positives = 243/325 (74%), Gaps = 6/325 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M AFL++ P + + R VPWVEKYRPKT+DDV Q EVVSVLKK
Sbjct: 1 MHAFLKSANPNLAPPLKERGKEAKQKPKREVHVPWVEKYRPKTVDDVAHQDEVVSVLKKS 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
L GADLP+ LFYGPPGTGKTST++A +LFGDMY+ RILELNASD+RGIQV+R+K+K F
Sbjct: 61 LLGADLPNLLFYGPPGTGKTSTILALSRELFGDMYKSRILELNASDERGIQVVREKIKNF 120
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
+Q TA+ DG+PCPPFKIVILDEADSMT +AQAALRRTMEK+TK+TRFCLICNY+S I
Sbjct: 121 SQLTANATRPDGRPCPPFKIVILDEADSMTPSAQAALRRTMEKQTKTTRFCLICNYISRI 180
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALE---TLVETSGGDMRRAIT 237
I+PLTSRCSKFRFKPL ++ +L RLQ IC E+V CD +A+ L GDMRRAIT
Sbjct: 181 IEPLTSRCSKFRFKPLPKDILLERLQKICTAENVQCDDEAILFFFFLKSACLGDMRRAIT 240
Query: 238 CLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSA 294
QS +RLK GE ++ EDV EV +IPK W++++L+ +S++ L++ I+DL+LE Y A
Sbjct: 241 LFQSVSRLKLGEPVLTEDVAEVACIIPKSWVDRVLQTCASNSYEKLDQTIQDLVLEGYPA 300
Query: 295 TQLFDQFHDIVMLASSLSDKQKALF 319
+QLF+Q HD+++ ++ DKQK++
Sbjct: 301 SQLFNQLHDVLIASADYDDKQKSVI 325
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 90/117 (76%), Gaps = 3/117 (2%)
Query: 331 GDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIED 387
GDMRRAIT QS +RLK GE ++ EDV EV +IP W++++L+ +S++ L++ I+D
Sbjct: 233 GDMRRAITLFQSVSRLKLGEPVLTEDVAEVACIIPKSWVDRVLQTCASNSYEKLDQTIQD 292
Query: 388 LILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 444
L+LE Y A+QLF+Q HD++++++ DKQK++I+EKLA C+ RL +GA EY+Q++DL
Sbjct: 293 LVLEGYPASQLFNQLHDVLIASADYDDKQKSVIMEKLAICDHRLLEGADEYLQMMDL 349
>gi|147905139|ref|NP_001082757.1| replication factor C (activator 1) 4, 37kDa [Xenopus laevis]
gi|34097966|dbj|BAC82198.1| replication factor C p37 subunit [Xenopus laevis]
gi|120537910|gb|AAI29743.1| RFC2 protein [Xenopus laevis]
Length = 363
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/327 (59%), Positives = 243/327 (74%), Gaps = 8/327 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT----RNKPVPWVEKYRPKTIDDVIEQQEVVSV 56
M+AFL+ G P K S S +G T + KP+PWVEKYRPK +D+V Q EVV+V
Sbjct: 1 MQAFLKGGTSIGTKPVKDKASASGTGSTGESKKQKPIPWVEKYRPKCVDEVAFQDEVVAV 60
Query: 57 LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRD 115
LKK L GADLP+ LFYGPPGTGKTST++AA +L+G +++R+R+LELNASD+RGIQV+R+
Sbjct: 61 LKKSLQGADLPNLLFYGPPGTGKTSTILAASRELYGPELFRQRVLELNASDERGIQVVRE 120
Query: 116 KVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175
KVK FAQ T G DGKPCPPFKI+ILDEADSMT AAQAALRRTMEKE+K+TRFCLICN
Sbjct: 121 KVKNFAQLTVGGTRSDGKPCPPFKIIILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 180
Query: 176 YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRA 235
YVS II+PLTSRCSKFRFKPLA+ RL ICE+E+V +A+ LVE S GD+R+A
Sbjct: 181 YVSRIIEPLTSRCSKFRFKPLADKIQTQRLLSICEKENVQITNEAISCLVEVSEGDLRKA 240
Query: 236 ITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAY 292
IT LQS ARL G+ I E V E+ GV+PK ++ +L V SF+ LE +++DLI +
Sbjct: 241 ITFLQSAARLTRGKEITEEIVTEIAGVVPKETLDSVLVVCQSGSFEKLENFVKDLINNGH 300
Query: 293 SATQLFDQFHDIVMLASSLSDKQKALF 319
+ATQL +Q HD+++ L+DKQKA
Sbjct: 301 AATQLVNQLHDVILERGDLTDKQKAFI 327
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 91/134 (67%), Gaps = 3/134 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+A+ LVE S GD+R+AIT LQS ARL G+ I E V E+ GV+P ++ +L V
Sbjct: 224 EAISCLVEVSEGDLRKAITFLQSAARLTRGKEITEEIVTEIAGVVPKETLDSVLVVCQSG 283
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
SF+ LE +++DLI ++ATQL +Q HD+++ L+DKQKA I EKLA+ + L DGA
Sbjct: 284 SFEKLENFVKDLINNGHAATQLVNQLHDVILERGDLTDKQKAFITEKLADVDKCLTDGAD 343
Query: 437 EYIQILDLGSIVIK 450
EY+Q+L L ++V++
Sbjct: 344 EYLQMLGLFAVVMQ 357
>gi|340369406|ref|XP_003383239.1| PREDICTED: replication factor C subunit 4-like [Amphimedon
queenslandica]
Length = 363
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/325 (57%), Positives = 241/325 (74%), Gaps = 8/325 (2%)
Query: 1 MEAFLRTG----KLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSV 56
M+AF + G G D + + G + VPWVEKYRPK +DDV+ Q EVVSV
Sbjct: 1 MDAFFQPGGRAKSKGADKNVGGSKNSAQQGPVEKRKVPWVEKYRPKVVDDVVHQDEVVSV 60
Query: 57 LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRD 115
LKK L+G+D P+ LFYGPPGTGKTS ++A H+LFG D+Y+ RILELNASDDRGIQVIRD
Sbjct: 61 LKKTLTGSDFPNLLFYGPPGTGKTSAILAIAHELFGRDLYKSRILELNASDDRGIQVIRD 120
Query: 116 KVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175
KVK+FA+ +AS DGKPCP FKIVILDEADSMT AAQAALRRTMEKE+ STRFCLICN
Sbjct: 121 KVKSFARHSASASRPDGKPCPSFKIVILDEADSMTQAAQAALRRTMEKESTSTRFCLICN 180
Query: 176 YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRA 235
Y+S II+PLTSRCSKFRFKPL+ + TRL+YIC +E+V C+ KA++ ++ETS GDMR+A
Sbjct: 181 YISRIIEPLTSRCSKFRFKPLSSAILRTRLEYICREENVKCNEKAIDRIIETSDGDMRKA 240
Query: 236 ITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAY 292
IT LQS RLKG E + +D++E+ GV+P+ IE LLK +S+ LE +++ + E +
Sbjct: 241 ITFLQSGYRLKGDEEVTEKDIMEIAGVVPQSLIEGLLKTCSSNSYDQLETAVKNFVAEGF 300
Query: 293 SATQLFDQFHDIVMLASSLSDKQKA 317
A Q+ +Q +D+++ L+D QK+
Sbjct: 301 PAVQIMNQLNDVIITHCELNDLQKS 325
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 91/133 (68%), Gaps = 3/133 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
KA++ ++ETS GDMR+AIT LQS RLKG E + +D++E+ GV+P IE LLK +
Sbjct: 224 KAIDRIIETSDGDMRKAITFLQSGYRLKGDEEVTEKDIMEIAGVVPQSLIEGLLKTCSSN 283
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
S+ LE +++ + E + A Q+ +Q +D++++ L+D QK+ I E++A + RL DGA
Sbjct: 284 SYDQLETAVKNFVAEGFPAVQIMNQLNDVIITHCELNDLQKSAICEQMAVVDRRLSDGAD 343
Query: 437 EYIQILDLGSIVI 449
EY+Q+LD+ S ++
Sbjct: 344 EYLQLLDISSFIM 356
>gi|18859927|ref|NP_573245.1| CG8142 [Drosophila melanogaster]
gi|17862532|gb|AAL39743.1| LD35209p [Drosophila melanogaster]
gi|22832754|gb|AAF48768.2| CG8142 [Drosophila melanogaster]
Length = 353
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/321 (57%), Positives = 243/321 (75%), Gaps = 7/321 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+TGK S S T R P PWVEKYRP+ +DDV+EQ EVV+VL+KC
Sbjct: 1 MQAFLKTGK---STAGSGDKSQGTPAARRKPPAPWVEKYRPRNVDDVVEQSEVVAVLRKC 57
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ G DLP+ L YGPPGTGKTST++AA Q+FGDM+++RILELNASD+RGI V+R K+K F
Sbjct: 58 VEGGDLPNMLLYGPPGTGKTSTILAASRQIFGDMFKDRILELNASDERGINVVRTKIKNF 117
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
+Q +AS DGKPCPPFKI+ILDEADSMTHAAQ+ALRRTMEKE++STRFCLICNYVS I
Sbjct: 118 SQLSASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRI 177
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I P+TSRCSKFRFK L E+ ++ RL+YICE E V + A +++V+ SGGD+RRAIT LQ
Sbjct: 178 IVPITSRCSKFRFKALGEDKVIDRLKYICEMEGVKIEDDAYKSIVKISGGDLRRAITTLQ 237
Query: 241 SCARLKGGEGIVN-EDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
SC RLKG E I+N D+ E++GVIP+ ++E L+V +++ LE+++ ++ AYS Q
Sbjct: 238 SCYRLKGPEHIINTADLFEMSGVIPEYYLEDYLEVCRSGNYERLEQFVREIGFSAYSVGQ 297
Query: 297 LFDQFHDIVMLASSLSDKQKA 317
+ +QF + ++ L+D QKA
Sbjct: 298 MMEQFVEFIVHHPGLNDPQKA 318
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 95/137 (69%), Gaps = 4/137 (2%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPNPWIEKLLKV---D 376
A +++V+ SGGD+RRAIT LQSC RLKG E I+N D+ E++GVIP ++E L+V
Sbjct: 217 AYKSIVKISGGDLRRAITTLQSCYRLKGPEHIINTADLFEMSGVIPEYYLEDYLEVCRSG 276
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+++ LE+++ ++ AYS Q+ +QF + ++ L+D QKA I +KL EC RLQDG S
Sbjct: 277 NYERLEQFVREIGFSAYSVGQMMEQFVEFIVHHPGLNDPQKATICDKLGECCFRLQDGGS 336
Query: 437 EYIQILDLGSIVIKANK 453
EY+QI+DLG +I A K
Sbjct: 337 EYLQIMDLGCCIILALK 353
>gi|62858553|ref|NP_001016363.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
gi|89266993|emb|CAJ81288.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
gi|134026004|gb|AAI35433.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
Length = 360
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/327 (59%), Positives = 243/327 (74%), Gaps = 8/327 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT----RNKPVPWVEKYRPKTIDDVIEQQEVVSV 56
M+AFL+ G P K S S +G T + KPVPWVEKYRPK +D+V Q+EVV+V
Sbjct: 1 MQAFLKGGTSISTKPVKDKASASGTGSTGESKKQKPVPWVEKYRPKCVDEVAFQEEVVAV 60
Query: 57 LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRD 115
LKK L GADLP+ LFYGPPGTGKTST++AA +L+G +++R+R+LELNASD+RGIQV+R+
Sbjct: 61 LKKSLEGADLPNLLFYGPPGTGKTSTILAASRELYGPELFRQRVLELNASDERGIQVVRE 120
Query: 116 KVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175
KVK FAQ T G DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICN
Sbjct: 121 KVKNFAQLTVGGTRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 180
Query: 176 YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRA 235
YVS II+PLTSRCSKFRFKPLA+ RL ICE+E+V +A+ LVE S GD+R+A
Sbjct: 181 YVSRIIEPLTSRCSKFRFKPLADKIQTQRLLSICEKENVKITNEAISCLVEVSEGDLRKA 240
Query: 236 ITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEAY 292
IT LQS RL GG+ I E V E+ GV+PK ++ +L + SF+ LE +++LI +
Sbjct: 241 ITFLQSATRLTGGKEITEEIVTEIAGVVPKETLDCVLVACQSGSFEKLETVVKNLINNGH 300
Query: 293 SATQLFDQFHDIVMLASSLSDKQKALF 319
+ATQL +Q HD+++ L+DKQKA
Sbjct: 301 AATQLVNQLHDVILERGDLTDKQKAFI 327
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 110/192 (57%), Gaps = 9/192 (4%)
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLF------DQFHDIVMLASSLSDKQKALFKA 321
+EK K F ++ Y+ +I S F D+ +L+ + K +A
Sbjct: 166 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLADKIQTQRLLSICEKENVKITNEA 225
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSF 378
+ LVE S GD+R+AIT LQS RL GG+ I E V E+ GV+P ++ +L + SF
Sbjct: 226 ISCLVEVSEGDLRKAITFLQSATRLTGGKEITEEIVTEIAGVVPKETLDCVLVACQSGSF 285
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
+ LE +++LI ++ATQL +Q HD+++ L+DKQKA I EKLAE + L DGA EY
Sbjct: 286 EKLETVVKNLINNGHAATQLVNQLHDVILERGDLTDKQKAFITEKLAEVDKCLADGADEY 345
Query: 439 IQILDLGSIVIK 450
+Q+L L ++V++
Sbjct: 346 LQMLGLFAVVMQ 357
>gi|260800650|ref|XP_002595211.1| hypothetical protein BRAFLDRAFT_284971 [Branchiostoma floridae]
gi|229280455|gb|EEN51223.1| hypothetical protein BRAFLDRAFT_284971 [Branchiostoma floridae]
Length = 364
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/329 (58%), Positives = 249/329 (75%), Gaps = 12/329 (3%)
Query: 1 MEAFLRTG-----KLGKDAPSSSKTSVSTSGKTRNKP-VPWVEKYRPKTIDDVIEQQEVV 54
M+AFL+ G K KD P S + S K R +P PWVEKYRP+T+DDV Q+EVV
Sbjct: 1 MQAFLKGGSSSGLKSKKDKPLSD--AKPGSSKERRQPNAPWVEKYRPRTVDDVAFQEEVV 58
Query: 55 SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVI 113
+VLKK L GADLP+ L YGPPGTGKTST++AA +LFG D+ ++R+LELNASD+RGIQV+
Sbjct: 59 AVLKKSLQGADLPNLLLYGPPGTGKTSTILAAARELFGADLMKQRVLELNASDERGIQVV 118
Query: 114 RDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLI 173
RDKVKTF+Q +ASG DG+PCPPFKIVILDEADSMT+ AQA+LRRTMEKETK+TRFCLI
Sbjct: 119 RDKVKTFSQLSASGTRPDGRPCPPFKIVILDEADSMTNPAQASLRRTMEKETKTTRFCLI 178
Query: 174 CNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMR 233
CNY+S II+PL SRC+KFRFKPL+ + + RL++I E E V + KA+ L++TS GD+R
Sbjct: 179 CNYISRIIEPLASRCAKFRFKPLSSDILQKRLRHIAEAEKVNAEDKAITALIDTSEGDLR 238
Query: 234 RAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILE 290
+AIT LQS RLKG + I +D+LE+TGVIPK + +L++ DS++ LEK ++DL E
Sbjct: 239 KAITYLQSAHRLKGEDAITEKDILEITGVIPKDMVSQLIQTCYSDSYEKLEKSVKDLKAE 298
Query: 291 AYSATQLFDQFHDIVMLASSLSDKQKALF 319
YSA Q+ Q HD V+ L+DKQK++
Sbjct: 299 GYSAEQVILQIHDEVLPREDLTDKQKSVI 327
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 99/142 (69%), Gaps = 3/142 (2%)
Query: 312 SDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK 371
++K A KA+ L++TS GD+R+AIT LQS RLKG + I +D+LE+TGVIP + +
Sbjct: 216 AEKVNAEDKAITALIDTSEGDLRKAITYLQSAHRLKGEDAITEKDILEITGVIPKDMVSQ 275
Query: 372 LLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 428
L++ DS++ LEK ++DL E YSA Q+ Q HD V+ L+DKQK++I EK+A C+
Sbjct: 276 LIQTCYSDSYEKLEKSVKDLKAEGYSAEQVILQIHDEVLPREDLTDKQKSVIAEKIAVCD 335
Query: 429 ARLQDGASEYIQILDLGSIVIK 450
RL DG E++Q++DL S++++
Sbjct: 336 QRLADGGDEFLQLMDLTSVMMQ 357
>gi|118783134|ref|XP_312782.3| AGAP003093-PA [Anopheles gambiae str. PEST]
gi|116129067|gb|EAA08477.3| AGAP003093-PA [Anopheles gambiae str. PEST]
Length = 361
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/326 (59%), Positives = 254/326 (77%), Gaps = 7/326 (2%)
Query: 1 MEAFLRTGKLGKDAPSSS---KTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVL 57
M+AFL+TG+ ++ ++ + +T+ K VPWVEKYRPK++DDV+EQ EVV+VL
Sbjct: 1 MQAFLKTGRTTGESSAAGPGGDSGTTTATKRPKHSVPWVEKYRPKSVDDVVEQAEVVAVL 60
Query: 58 KKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKV 117
++ LS DLP+ L YGPPGTGKTST++AA QLFGDM++ERILELNASDDRGI VIR+KV
Sbjct: 61 RESLSTTDLPNLLLYGPPGTGKTSTILAAARQLFGDMFKERILELNASDDRGIAVIRNKV 120
Query: 118 KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYV 177
KTFAQ TASG DGKPCPPFKIVILDEAD+MTHAAQAALRRTMEKETK+TRFCL+CNYV
Sbjct: 121 KTFAQLTASGTRTDGKPCPPFKIVILDEADAMTHAAQAALRRTMEKETKTTRFCLVCNYV 180
Query: 178 SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAIT 237
S II+P+TSRC+KFRFKPL E ++ RL+YIC+QE V D + +V+ SGGD+RRAIT
Sbjct: 181 SRIIEPITSRCTKFRFKPLGEEKIIERLRYICDQEGVTVDDGVYKDIVDISGGDLRRAIT 240
Query: 238 CLQSCARLKGGEG-IVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYS 293
LQSC RLKG + I +D+LE++GV+P+ ++E+ + V ++ LE+Y+++L +AYS
Sbjct: 241 TLQSCHRLKGAQARIERQDILEMSGVVPERYLEEFISVCKSSNYSKLEEYVQNLSYDAYS 300
Query: 294 ATQLFDQFHDIVMLASSLSDKQKALF 319
QLF+Q + ++ L++KQKA+
Sbjct: 301 VGQLFEQLTEYIVYNDGLTEKQKAVI 326
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/133 (48%), Positives = 94/133 (70%), Gaps = 4/133 (3%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEG-IVNEDVLEVTGVIPNPWIEKLLKV---DSFQV 380
+V+ SGGD+RRAIT LQSC RLKG + I +D+LE++GV+P ++E+ + V ++
Sbjct: 227 IVDISGGDLRRAITTLQSCHRLKGAQARIERQDILEMSGVVPERYLEEFISVCKSSNYSK 286
Query: 381 LEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQ 440
LE+Y+++L +AYS QLF+Q + ++ L++KQKA+I +KL EC RL G SEYIQ
Sbjct: 287 LEEYVQNLSYDAYSVGQLFEQLTEYIVYNDGLTEKQKAVICDKLGECCFRLHGGGSEYIQ 346
Query: 441 ILDLGSIVIKANK 453
I+DLG I I+A K
Sbjct: 347 IMDLGCITIQALK 359
>gi|195163892|ref|XP_002022783.1| GL14564 [Drosophila persimilis]
gi|194104806|gb|EDW26849.1| GL14564 [Drosophila persimilis]
Length = 354
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/321 (58%), Positives = 243/321 (75%), Gaps = 6/321 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+TGK G A S S + + R P PWVEKYRP+++DDV+EQ EVV+VL+KC
Sbjct: 1 MQAFLKTGKSG--ASSGSDKPQGGTVERRKPPAPWVEKYRPRSVDDVVEQSEVVAVLRKC 58
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ GADLP+ L YGPPGTGKTST++AA Q+FGDMY++RILELNASD+RGI V+R K+K F
Sbjct: 59 VEGADLPNMLLYGPPGTGKTSTILAAARQIFGDMYKDRILELNASDERGINVVRTKIKNF 118
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
+Q +AS DG+P PPFKI+ILDEADSMTHAAQ+ALRRTMEKE+ STRFCLICNYVS I
Sbjct: 119 SQLSASHVRPDGRPVPPFKIIILDEADSMTHAAQSALRRTMEKESSSTRFCLICNYVSRI 178
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I P+TSRCSKFRFKPL E ++ RLQ+ICE ESV D A +T+V+ SGGD+RRAIT LQ
Sbjct: 179 IVPITSRCSKFRFKPLGEEKIIARLQHICELESVKIDPDAYKTIVKISGGDLRRAITTLQ 238
Query: 241 SCARLKGGEGIVN-EDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
SC RL+G E +N D+ E++GVIP ++ + V +++ LE+++ D+ AYS Q
Sbjct: 239 SCFRLQGSEHTINTADLFEMSGVIPDYLLDDFMDVCRSGNYERLEQFVRDIGYSAYSVGQ 298
Query: 297 LFDQFHDIVMLASSLSDKQKA 317
+ +Q + ++ +L+D QKA
Sbjct: 299 MMEQLVEFIVHHPNLTDPQKA 319
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 93/137 (67%), Gaps = 4/137 (2%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPNPWIEKLLKV---D 376
A +T+V+ SGGD+RRAIT LQSC RL+G E +N D+ E++GVIP+ ++ + V
Sbjct: 218 AYKTIVKISGGDLRRAITTLQSCFRLQGSEHTINTADLFEMSGVIPDYLLDDFMDVCRSG 277
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+++ LE+++ D+ AYS Q+ +Q + ++ +L+D QKA I EKL EC RLQDG S
Sbjct: 278 NYERLEQFVRDIGYSAYSVGQMMEQLVEFIVHHPNLTDPQKAKICEKLGECCYRLQDGGS 337
Query: 437 EYIQILDLGSIVIKANK 453
EY+QI+DLG +I A K
Sbjct: 338 EYLQIMDLGCCIILALK 354
>gi|195447178|ref|XP_002071099.1| GK25619 [Drosophila willistoni]
gi|194167184|gb|EDW82085.1| GK25619 [Drosophila willistoni]
Length = 355
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 185/322 (57%), Positives = 248/322 (77%), Gaps = 7/322 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+TGK A ++ + + + R P PWVEKYRP++++DV+EQ EVV+VLKKC
Sbjct: 1 MQAFLKTGK--SSASTNQDKATAAPVERRKPPAPWVEKYRPRSVEDVVEQSEVVAVLKKC 58
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ GADLP+ L YGPPGTGKTST++AA Q+FGDMYR+RILELNASD+RGI V+R K+K F
Sbjct: 59 VEGADLPNMLLYGPPGTGKTSTILAAGRQIFGDMYRDRILELNASDERGINVVRTKIKNF 118
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
AQ +AS DG+PCPPFKI+ILDEADSMTHAAQAALRRTMEKE++STRFCLICNYVS I
Sbjct: 119 AQLSASNVRPDGRPCPPFKIIILDEADSMTHAAQAALRRTMEKESRSTRFCLICNYVSRI 178
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDF-KALETLVETSGGDMRRAITCL 239
I P+TSRC+KFRFK L E+ ++ RL+ IC+ E V D ++ +++V SGGDMRRAIT L
Sbjct: 179 IVPITSRCTKFRFKSLGEDQIIERLKLICQAEGVQMDGEESYKSIVRISGGDMRRAITTL 238
Query: 240 QSCARLKGGEGIVN-EDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSAT 295
QSC RLKG E I+N +D+ E++G+IP +++ L+V +++ LE ++ ++ AYS
Sbjct: 239 QSCYRLKGPEHIINTQDLFEMSGIIPDYYLDDYLEVCRSGNYKRLEDFVREIGYSAYSVG 298
Query: 296 QLFDQFHDIVMLASSLSDKQKA 317
Q+ +QF + ++L +L+D QKA
Sbjct: 299 QMLEQFVEFIVLNENLTDPQKA 320
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 96/138 (69%), Gaps = 4/138 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPNPWIEKLLKV--- 375
++ +++V SGGDMRRAIT LQSC RLKG E I+N +D+ E++G+IP+ +++ L+V
Sbjct: 218 ESYKSIVRISGGDMRRAITTLQSCYRLKGPEHIINTQDLFEMSGIIPDYYLDDYLEVCRS 277
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
+++ LE ++ ++ AYS Q+ +QF + ++ +L+D QKA I +KL EC RLQDG
Sbjct: 278 GNYKRLEDFVREIGYSAYSVGQMLEQFVEFIVLNENLTDPQKARICDKLGECCYRLQDGG 337
Query: 436 SEYIQILDLGSIVIKANK 453
SEY+QI+DLG I A K
Sbjct: 338 SEYLQIMDLGCEAILALK 355
>gi|125982841|ref|XP_001355186.1| GA20846 [Drosophila pseudoobscura pseudoobscura]
gi|54643499|gb|EAL32243.1| GA20846 [Drosophila pseudoobscura pseudoobscura]
Length = 354
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/321 (58%), Positives = 242/321 (75%), Gaps = 6/321 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+TGK G A S S + + R P PWVEKYRP ++DDV+EQ EVV+VL+KC
Sbjct: 1 MQAFLKTGKSG--ASSGSDKPQGGTVERRKPPAPWVEKYRPSSVDDVVEQSEVVAVLRKC 58
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ GADLP+ L YGPPGTGKTST++AA Q+FGDMY++RILELNASD+RGI V+R K+K F
Sbjct: 59 VEGADLPNMLLYGPPGTGKTSTILAAARQIFGDMYKDRILELNASDERGINVVRTKIKNF 118
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
+Q +AS DG+P PPFKI+ILDEADSMTHAAQ+ALRRTMEKE+ STRFCLICNYVS I
Sbjct: 119 SQLSASHVRPDGRPVPPFKIIILDEADSMTHAAQSALRRTMEKESSSTRFCLICNYVSRI 178
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I P+TSRCSKFRFKPL E ++ RLQ+ICE ESV D A +T+V+ SGGD+RRAIT LQ
Sbjct: 179 IVPITSRCSKFRFKPLGEEKIIARLQHICELESVKIDPDAYKTIVKISGGDLRRAITTLQ 238
Query: 241 SCARLKGGEGIVN-EDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
SC RL+G E +N D+ E++GVIP ++ + V +++ LE+++ D+ AYS Q
Sbjct: 239 SCFRLQGSEHTINTADLFEMSGVIPDYLLDDFMDVCRSGNYERLEQFVRDIGYSAYSVGQ 298
Query: 297 LFDQFHDIVMLASSLSDKQKA 317
+ +Q + ++ +L+D QKA
Sbjct: 299 MMEQLVEFIVHHPNLTDPQKA 319
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 93/137 (67%), Gaps = 4/137 (2%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPNPWIEKLLKV---D 376
A +T+V+ SGGD+RRAIT LQSC RL+G E +N D+ E++GVIP+ ++ + V
Sbjct: 218 AYKTIVKISGGDLRRAITTLQSCFRLQGSEHTINTADLFEMSGVIPDYLLDDFMDVCRSG 277
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+++ LE+++ D+ AYS Q+ +Q + ++ +L+D QKA I EKL EC RLQDG S
Sbjct: 278 NYERLEQFVRDIGYSAYSVGQMMEQLVEFIVHHPNLTDPQKAKICEKLGECCYRLQDGGS 337
Query: 437 EYIQILDLGSIVIKANK 453
EY+QI+DLG +I A K
Sbjct: 338 EYLQIMDLGCCIILALK 354
>gi|195481163|ref|XP_002101540.1| GE15569 [Drosophila yakuba]
gi|194189064|gb|EDX02648.1| GE15569 [Drosophila yakuba]
Length = 353
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 186/321 (57%), Positives = 246/321 (76%), Gaps = 7/321 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+TGK A S K +T+ + R P PWVEKYRP+ +DDV+EQ EVV+VL+KC
Sbjct: 1 MQAFLKTGK--STAGSGDKNQGATTTR-RKPPAPWVEKYRPRNVDDVVEQSEVVAVLRKC 57
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ G DLP+ L YGPPGTGKTST++AA Q+FGDM+++RILELNASD+RGI V+R K+K F
Sbjct: 58 VEGGDLPNMLLYGPPGTGKTSTILAASRQIFGDMFKDRILELNASDERGINVVRTKIKNF 117
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
+Q +AS DGKPCPPFKI+ILDEADSMTHAAQ+ALRRTMEKE++STRFCLICNYVS I
Sbjct: 118 SQLSASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRI 177
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I P+TSRCSKFRFK L ++ ++ RL+YIC E V + A +++V+ SGGD+RRAIT LQ
Sbjct: 178 IVPITSRCSKFRFKALGDDKVIDRLKYICAMEGVKIEEDAYKSIVKISGGDLRRAITTLQ 237
Query: 241 SCARLKGGEGIVN-EDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
SC RLKG E I+N D+ E++GVIP+ ++E L+V +++ LE+++ ++ AYS Q
Sbjct: 238 SCYRLKGPEHIINTADLFEMSGVIPEYYLEDYLEVCRSGNYERLEQFVREIGFSAYSVGQ 297
Query: 297 LFDQFHDIVMLASSLSDKQKA 317
+ +QF + V+ L+D QKA
Sbjct: 298 MMEQFVEFVVHHPGLNDPQKA 318
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 66/137 (48%), Positives = 95/137 (69%), Gaps = 4/137 (2%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPNPWIEKLLKV---D 376
A +++V+ SGGD+RRAIT LQSC RLKG E I+N D+ E++GVIP ++E L+V
Sbjct: 217 AYKSIVKISGGDLRRAITTLQSCYRLKGPEHIINTADLFEMSGVIPEYYLEDYLEVCRSG 276
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+++ LE+++ ++ AYS Q+ +QF + V+ L+D QKA I +KL EC RLQDG S
Sbjct: 277 NYERLEQFVREIGFSAYSVGQMMEQFVEFVVHHPGLNDPQKAKICDKLGECCFRLQDGGS 336
Query: 437 EYIQILDLGSIVIKANK 453
EY+QI+DLG +I A K
Sbjct: 337 EYLQIMDLGCCIILALK 353
>gi|194763220|ref|XP_001963731.1| GF21175 [Drosophila ananassae]
gi|190618656|gb|EDV34180.1| GF21175 [Drosophila ananassae]
Length = 352
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 187/321 (58%), Positives = 239/321 (74%), Gaps = 8/321 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+TGK G + + + R P WVEKYRP+ +DDV+EQ EVV+VL+KC
Sbjct: 1 MQAFLKTGKSGTGLGEKQQGA----SERRKPPTLWVEKYRPRNVDDVVEQSEVVAVLRKC 56
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ G DLP+ L YGPPGTGKTST++AA Q+FGDMY+ RILELNASD+RGI V+R K+KTF
Sbjct: 57 VEGGDLPNMLLYGPPGTGKTSTILAAGRQIFGDMYKNRILELNASDERGINVVRTKIKTF 116
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
+Q AS DG+PCPPFKIVILDEADSMTHAAQ+ALRRTMEKE++STRFCLICNYVS I
Sbjct: 117 SQLAASSVRPDGRPCPPFKIVILDEADSMTHAAQSALRRTMEKESQSTRFCLICNYVSRI 176
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I P+TSRCSKFRFK L E ++ RLQ+ICEQE V D A +++V+ SGGD+RRAIT LQ
Sbjct: 177 IVPITSRCSKFRFKSLGEEKVIARLQFICEQEGVQIDPDAYKSIVKISGGDLRRAITTLQ 236
Query: 241 SCARLKGGEGIVN-EDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
SC RLKG E +N D+ E++GVIP +++ L+V ++ LEK++ D+ AYS Q
Sbjct: 237 SCFRLKGPEHTINTADLFEMSGVIPDYYLDDYLEVCRSGDYERLEKFVRDIGYSAYSVGQ 296
Query: 297 LFDQFHDIVMLASSLSDKQKA 317
+ +QF + ++ L+D QKA
Sbjct: 297 MMEQFVEFIVNHPGLNDPQKA 317
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/137 (48%), Positives = 96/137 (70%), Gaps = 4/137 (2%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPNPWIEKLLKV---D 376
A +++V+ SGGD+RRAIT LQSC RLKG E +N D+ E++GVIP+ +++ L+V
Sbjct: 216 AYKSIVKISGGDLRRAITTLQSCFRLKGPEHTINTADLFEMSGVIPDYYLDDYLEVCRSG 275
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
++ LEK++ D+ AYS Q+ +QF + +++ L+D QKA I +KL EC RLQDGAS
Sbjct: 276 DYERLEKFVRDIGYSAYSVGQMMEQFVEFIVNHPGLNDPQKAKICDKLGECCFRLQDGAS 335
Query: 437 EYIQILDLGSIVIKANK 453
EY+QI+DLG +I A K
Sbjct: 336 EYLQIMDLGCCIILALK 352
>gi|114052591|ref|NP_001040483.1| replication factor C4 [Bombyx mori]
gi|95103078|gb|ABF51480.1| replication factor C4 [Bombyx mori]
Length = 351
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 188/321 (58%), Positives = 244/321 (76%), Gaps = 13/321 (4%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSG-KTRNK---PVPWVEKYRPKTIDDVIEQQEVVSV 56
M+AFL+TGK+ S+ STSG KT NK P PWVEKYRPKTIDD+++Q EVV V
Sbjct: 1 MQAFLKTGKI------SAGDKASTSGVKTTNKKKPPAPWVEKYRPKTIDDIVDQGEVVQV 54
Query: 57 LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK 116
L++CLSG DLPH LFYGPPGTGKTS ++AA QLFGD+ R+R+LELNASD+RGIQV+RDK
Sbjct: 55 LRECLSGGDLPHLLFYGPPGTGKTSAILAAAKQLFGDISRDRVLELNASDERGIQVVRDK 114
Query: 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
VK FAQ T SG DG+PCP +K+VILDEADSMT AAQAALRRTME+ET++TRFCLICNY
Sbjct: 115 VKAFAQLTVSGKRADGRPCPSYKLVILDEADSMTTAAQAALRRTMERETRTTRFCLICNY 174
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV-MCDFKALETLVETSGGDMRRA 235
VS II P+TSRCSKFRFKPLA ++ RL+ ICE E+V + + + L V+T GD+RRA
Sbjct: 175 VSRIIPPITSRCSKFRFKPLARENVIKRLREICEAENVDVGEGEILNQAVDTCEGDLRRA 234
Query: 236 ITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKVDSFQVLEKYIEDLILEAYSAT 295
+T LQ C RL G I + ++EVTG++P+ + + L + ++ LE+++++ ++ AYSA+
Sbjct: 235 LTALQCCQRLYG--RITADGLIEVTGLVPEKLVNEYLSIKNYSELEEFVQNFLMRAYSAS 292
Query: 296 QLFDQFHDIVMLASSLSDKQK 316
QL +Q V+ A L++KQK
Sbjct: 293 QLLEQLSATVVAAGHLTNKQK 313
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 85/133 (63%), Gaps = 2/133 (1%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVL 381
L V+T GD+RRA+T LQ C RL G I + ++EVTG++P + + L + ++ L
Sbjct: 220 LNQAVDTCEGDLRRALTALQCCQRLYGR--ITADGLIEVTGLVPEKLVNEYLSIKNYSEL 277
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
E+++++ ++ AYSA+QL +Q V++A L++KQK I EK A C RL DG SE++Q+
Sbjct: 278 EEFVQNFLMRAYSASQLLEQLSATVVAAGHLTNKQKCAISEKTAVCLHRLLDGGSEFMQL 337
Query: 442 LDLGSIVIKANKT 454
DLG +I AN
Sbjct: 338 TDLGCTLIMANNN 350
>gi|380016014|ref|XP_003691988.1| PREDICTED: replication factor C subunit 4-like [Apis florea]
Length = 357
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/324 (58%), Positives = 248/324 (76%), Gaps = 7/324 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVP-WVEKYRPKTIDDVIEQQEVVSVLKK 59
M+AFL+TGKLG K S S S + R+ P P WVEKYRPK + DV+EQ EVV VL++
Sbjct: 1 MQAFLKTGKLGPG--EFKKVSNSRSKEERSGPAPPWVEKYRPKNVKDVVEQTEVVEVLRQ 58
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119
CL G D P+ LFYGPPGTGKTST++AA QLFG +Y+ER+LELNASD+RGIQV+R+K+K+
Sbjct: 59 CLKGGDFPNLLFYGPPGTGKTSTILAAARQLFGSLYKERVLELNASDERGIQVVREKIKS 118
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ TA G DGK CPPFKI+ILDEADSMT AAQAALRRTMEKE+ STRFCLICNYVS
Sbjct: 119 FAQLTAGGIRDDGKSCPPFKIIILDEADSMTGAAQAALRRTMEKESHSTRFCLICNYVSR 178
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+PLTSRC+KFRFKPL EN ++ RL+YIC++E + + L +VE SGGD+RRAITCL
Sbjct: 179 IIEPLTSRCTKFRFKPLGENKIIERLEYICKEEDLKVEKPVLLKIVEVSGGDLRRAITCL 238
Query: 240 QSCARLKG-GEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEAYSAT 295
QS +LKG G I +DVLE+ G++P W+++L+ K + E++++ +LEAY+ +
Sbjct: 239 QSITKLKGKGIEITVDDVLEIIGIVPNKWLDELIDICKTKDYTKAEEFVDQFMLEAYATS 298
Query: 296 QLFDQFHDIVMLASSLSDKQKALF 319
Q+ +Q + ++ ++ L+DKQKAL
Sbjct: 299 QVIEQLSERIIYSNELTDKQKALI 322
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 94/131 (71%), Gaps = 4/131 (3%)
Query: 325 LVETSGGDMRRAITCLQSCARLKG-GEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQV 380
+VE SGGD+RRAITCLQS +LKG G I +DVLE+ G++PN W+++L+ K +
Sbjct: 223 IVEVSGGDLRRAITCLQSITKLKGKGIEITVDDVLEIIGIVPNKWLDELIDICKTKDYTK 282
Query: 381 LEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQ 440
E++++ +LEAY+ +Q+ +Q + ++ ++ L+DKQKALI + L ECN RL DG +EYIQ
Sbjct: 283 AEEFVDQFMLEAYATSQVIEQLSERIIYSNELTDKQKALIADTLGECNYRLLDGGNEYIQ 342
Query: 441 ILDLGSIVIKA 451
++++ +IKA
Sbjct: 343 LMNICCGIIKA 353
>gi|194892122|ref|XP_001977600.1| GG18160 [Drosophila erecta]
gi|190649249|gb|EDV46527.1| GG18160 [Drosophila erecta]
Length = 353
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 183/321 (57%), Positives = 240/321 (74%), Gaps = 7/321 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+TGK S S R P PWVEKYRP+ +DDV+EQ EVV+VL+KC
Sbjct: 1 MQAFLKTGK---STAGSGDKSQGAPAARRKPPAPWVEKYRPRNVDDVVEQSEVVAVLRKC 57
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ G DLP+ L YGPPGTGKTST++AA Q+FGDM+++RILELNASD+RGI V+R K+K F
Sbjct: 58 VEGGDLPNMLLYGPPGTGKTSTILAASRQIFGDMFKDRILELNASDERGINVVRTKIKNF 117
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
+Q +AS DGKPCPPFKI+ILDEADSMTHAAQ+ALRRTMEKE++STRFCLICNYVS I
Sbjct: 118 SQLSASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRI 177
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I P+TSRCSKFRFK L E+ ++ RL+YIC E V + A +++V+ SGGD+RRAIT LQ
Sbjct: 178 IVPITSRCSKFRFKALGEDKVIDRLKYICGLEGVKIEEDAYKSIVKISGGDLRRAITTLQ 237
Query: 241 SCARLKGGEGIVN-EDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
SC RLKG E +N D+ E++GVIP+ ++E L+V +++ LE+++ ++ AYS Q
Sbjct: 238 SCYRLKGPEHTINTADLFEMSGVIPEYYLEDYLEVCRSGNYERLEQFVREIGFSAYSVGQ 297
Query: 297 LFDQFHDIVMLASSLSDKQKA 317
+ +QF + ++ L+D QKA
Sbjct: 298 MMEQFVEFIVHHPGLNDPQKA 318
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 94/137 (68%), Gaps = 4/137 (2%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPNPWIEKLLKV---D 376
A +++V+ SGGD+RRAIT LQSC RLKG E +N D+ E++GVIP ++E L+V
Sbjct: 217 AYKSIVKISGGDLRRAITTLQSCYRLKGPEHTINTADLFEMSGVIPEYYLEDYLEVCRSG 276
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+++ LE+++ ++ AYS Q+ +QF + ++ L+D QKA I +KL EC RLQDG S
Sbjct: 277 NYERLEQFVREIGFSAYSVGQMMEQFVEFIVHHPGLNDPQKATICDKLGECCFRLQDGGS 336
Query: 437 EYIQILDLGSIVIKANK 453
EY+QI+DLG +I A K
Sbjct: 337 EYLQIMDLGCCIILALK 353
>gi|340721765|ref|XP_003399285.1| PREDICTED: replication factor C subunit 4-like [Bombus terrestris]
Length = 357
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/323 (58%), Positives = 247/323 (76%), Gaps = 5/323 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+TGKLG P + TS S + PWVEKYRP+T++DV+EQ EVV VL++C
Sbjct: 1 MQAFLKTGKLGPGEPKKASTSRSKEEHS-GSATPWVEKYRPRTVEDVVEQAEVVEVLRQC 59
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
L+G D P+ LFYGPPGTGKTST++AA QLFG +Y+ERILELNASD+RGIQV+RDK+K+F
Sbjct: 60 LTGGDFPNLLFYGPPGTGKTSTILAAARQLFGSLYKERILELNASDERGIQVVRDKIKSF 119
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
AQ TA G DGK CPPFKI+ILDEADSMT+AAQAALRRTMEKE+ +TRFCLICNYVS I
Sbjct: 120 AQLTAGGMRDDGKGCPPFKIIILDEADSMTNAAQAALRRTMEKESHTTRFCLICNYVSRI 179
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I+PLTSRC+KFRFKPL E+ ++ RL+YIC++E + L +VE SGGD+RRAITCLQ
Sbjct: 180 IEPLTSRCTKFRFKPLGEDKIVERLEYICKEEDLKASKPVLLKIVEASGGDLRRAITCLQ 239
Query: 241 SCARLKG-GEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQ 296
S RLKG G I +D++E+ G++P W++ L+ K + E++I+ +LEAY+ +Q
Sbjct: 240 SITRLKGKGTDITVDDIIEIIGIVPDKWLDDLMNVCKTKDYSKAEEFIDQFMLEAYATSQ 299
Query: 297 LFDQFHDIVMLASSLSDKQKALF 319
+ +Q + ++ ++ L+DKQK L
Sbjct: 300 VIEQLSERIIYSNELTDKQKTLI 322
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 96/140 (68%), Gaps = 4/140 (2%)
Query: 316 KALFKALETLVETSGGDMRRAITCLQSCARLKG-GEGIVNEDVLEVTGVIPNPWIEKLL- 373
KA L +VE SGGD+RRAITCLQS RLKG G I +D++E+ G++P+ W++ L+
Sbjct: 214 KASKPVLLKIVEASGGDLRRAITCLQSITRLKGKGTDITVDDIIEIIGIVPDKWLDDLMN 273
Query: 374 --KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 431
K + E++I+ +LEAY+ +Q+ +Q + ++ ++ L+DKQK LI ++L ECN RL
Sbjct: 274 VCKTKDYSKAEEFIDQFMLEAYATSQVIEQLSERIIYSNELTDKQKTLIADRLGECNYRL 333
Query: 432 QDGASEYIQILDLGSIVIKA 451
DG SEYIQ+++L +IKA
Sbjct: 334 LDGGSEYIQLINLCCGIIKA 353
>gi|156383785|ref|XP_001633013.1| predicted protein [Nematostella vectensis]
gi|156220077|gb|EDO40950.1| predicted protein [Nematostella vectensis]
Length = 357
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/322 (59%), Positives = 243/322 (75%), Gaps = 8/322 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGK-TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKK 59
ME+FL+ GK A SSSK +G + K PWVEKYRPK +DDV +Q+EVV VLKK
Sbjct: 1 MESFLK-GKTS--ASSSSKVKQGVAGSLGKQKSSPWVEKYRPKCVDDVAQQEEVVMVLKK 57
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVK 118
L GADLP+ LFYGPPGTGKTST++A +L+G +M ++R+LELNASD+RGIQVIRDKVK
Sbjct: 58 SLEGADLPNLLFYGPPGTGKTSTILAVARELYGHEMLKQRVLELNASDERGIQVIRDKVK 117
Query: 119 TFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS 178
TF+Q +AS DGKPCPPFK+VILDEADSMT +AQAALRRTMEK+TK+TRFCLICNYVS
Sbjct: 118 TFSQLSASASRPDGKPCPPFKLVILDEADSMTPSAQAALRRTMEKQTKTTRFCLICNYVS 177
Query: 179 CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITC 238
II+PLTSRCSKFRFKPL+ + RL+ IC +E V C+ KA++ +++ S GDMR+AIT
Sbjct: 178 RIIEPLTSRCSKFRFKPLSSEILERRLKEICVKEEVNCEDKAIDEVIKISEGDMRKAITF 237
Query: 239 LQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEAYSAT 295
LQS RLKG GIV ED++E+ G IP I+ L + DS+Q LE ++++I E ++A+
Sbjct: 238 LQSAHRLKGDSGIVAEDIIEIAGAIPDNLIKSLFDASRSDSYQKLEGVVKEIIAEGHAAS 297
Query: 296 QLFDQFHDIVMLASSLSDKQKA 317
QL Q HD ++ L+D QK+
Sbjct: 298 QLIGQVHDQIVQMEDLNDHQKS 319
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 92/134 (68%), Gaps = 3/134 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
KA++ +++ S GDMR+AIT LQS RLKG GIV ED++E+ G IP+ I+ L + D
Sbjct: 218 KAIDEVIKISEGDMRKAITFLQSAHRLKGDSGIVAEDIIEIAGAIPDNLIKSLFDASRSD 277
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
S+Q LE ++++I E ++A+QL Q HD ++ L+D QK+ I+EK+A + L DGA
Sbjct: 278 SYQKLEGVVKEIIAEGHAASQLIGQVHDQIVQMEDLNDHQKSAIMEKIAIVDKCLIDGAD 337
Query: 437 EYIQILDLGSIVIK 450
EY+Q+L + S++++
Sbjct: 338 EYLQVLSMCSVMMQ 351
>gi|383860560|ref|XP_003705757.1| PREDICTED: replication factor C subunit 4-like [Megachile
rotundata]
Length = 357
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/323 (59%), Positives = 246/323 (76%), Gaps = 5/323 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+TGKLG + TS T K P PWVEKYRPKT++DV+EQ EVV VL++C
Sbjct: 1 MQAFLKTGKLGPEGSKKPSTS-RTKEKRSAPPPPWVEKYRPKTVEDVVEQAEVVEVLRQC 59
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
LSG+D P+ LFYGPPGTGKTST++AA QLFG +Y++RILELNASD+RGIQV+RDK+KTF
Sbjct: 60 LSGSDFPNLLFYGPPGTGKTSTILAAARQLFGSLYKDRILELNASDERGIQVVRDKIKTF 119
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
AQ TA G DGK CPPFKI+ILDEADSMT AAQAALRRTMEKE+ STRFCLICNYVS I
Sbjct: 120 AQLTAGGMRDDGKRCPPFKIIILDEADSMTAAAQAALRRTMEKESHSTRFCLICNYVSRI 179
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I+PLTSRC+KFRFKPL E ++ RL+YI +E + L +VE SGGDMRRAITCLQ
Sbjct: 180 IEPLTSRCTKFRFKPLGEEKIIERLEYISNEEGLKAGKPVLLKIVEASGGDMRRAITCLQ 239
Query: 241 SCARLKGGE-GIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
S RLKG + I +D++E+ G++P WI++L++V + E +I+ +LEAY+A+Q
Sbjct: 240 SITRLKGKDIEITIDDIVEIIGIVPDKWIDELMEVCKTKDYSKAEAFIDTFMLEAYAASQ 299
Query: 297 LFDQFHDIVMLASSLSDKQKALF 319
+ +Q + ++ ++ +D+QKAL
Sbjct: 300 VIEQLSERIIYSNEFTDRQKALI 322
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/140 (45%), Positives = 98/140 (70%), Gaps = 4/140 (2%)
Query: 316 KALFKALETLVETSGGDMRRAITCLQSCARLKGGE-GIVNEDVLEVTGVIPNPWIEKLLK 374
KA L +VE SGGDMRRAITCLQS RLKG + I +D++E+ G++P+ WI++L++
Sbjct: 214 KAGKPVLLKIVEASGGDMRRAITCLQSITRLKGKDIEITIDDIVEIIGIVPDKWIDELME 273
Query: 375 V---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 431
V + E +I+ +LEAY+A+Q+ +Q + ++ ++ +D+QKALI ++L ECN RL
Sbjct: 274 VCKTKDYSKAEAFIDTFMLEAYAASQVIEQLSERIIYSNEFTDRQKALIADRLGECNYRL 333
Query: 432 QDGASEYIQILDLGSIVIKA 451
DG SEYIQ+++L +IKA
Sbjct: 334 LDGGSEYIQLINLCCGIIKA 353
>gi|72072160|ref|XP_787339.1| PREDICTED: replication factor C subunit 4-like isoform 2
[Strongylocentrotus purpuratus]
gi|390359382|ref|XP_003729467.1| PREDICTED: replication factor C subunit 4-like isoform 1
[Strongylocentrotus purpuratus]
Length = 355
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 186/321 (57%), Positives = 243/321 (75%), Gaps = 9/321 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+ G A +SS T G T+ + VPWVEKYRP+T+D+V Q EVV+VLKK
Sbjct: 1 MDAFLKGGSFKSKAAASS-----TGGSTKQRQVPWVEKYRPRTVDEVAYQDEVVAVLKKS 55
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
L GADLP+ LFYGPPGTGKTST++AA +LFG DMYR R+LELNASD+RGIQV+RDKVK
Sbjct: 56 LQGADLPNMLFYGPPGTGKTSTILAASRELFGTDMYRSRVLELNASDERGIQVVRDKVKK 115
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ A G DGKPCPPFKI+ILDEADSMT+ AQAALRRTMEK++K+T+FCLICNY+S
Sbjct: 116 FAQTAAGGIRPDGKPCPPFKIIILDEADSMTYDAQAALRRTMEKQSKNTKFCLICNYISR 175
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+PLTSRCSKFRFKPL++ +L+ ICE E++ C +ALE +++ S GDMR++IT L
Sbjct: 176 IIEPLTSRCSKFRFKPLSKPIQGKKLREICEAENINCGEEALEAILKLSEGDMRKSITFL 235
Query: 240 QSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
QS RL+ +GI EDV E+ GVIP I+ L++ S++ L++ +++L+ YSA+Q
Sbjct: 236 QSVHRLQREDGIRVEDVYEIAGVIPDKMIDDLIQACYGGSYEKLDEKVQELLQGGYSASQ 295
Query: 297 LFDQFHDIVMLASSLSDKQKA 317
+ +Q DI++ L+DKQK+
Sbjct: 296 VVNQIFDIIVDRGELTDKQKS 316
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 91/133 (68%), Gaps = 3/133 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+ALE +++ S GDMR++IT LQS RL+ +GI EDV E+ GVIP+ I+ L++
Sbjct: 215 EALEAILKLSEGDMRKSITFLQSVHRLQREDGIRVEDVYEIAGVIPDKMIDDLIQACYGG 274
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
S++ L++ +++L+ YSA+Q+ +Q DI++ L+DKQK+ I E+LA + RL DGA
Sbjct: 275 SYEKLDEKVQELLQGGYSASQVVNQIFDIIVDRGELTDKQKSAIAERLAVIDKRLCDGAD 334
Query: 437 EYIQILDLGSIVI 449
E +QI+DL ++ +
Sbjct: 335 EGLQIMDLFTLTM 347
>gi|350426161|ref|XP_003494352.1| PREDICTED: replication factor C subunit 4-like [Bombus impatiens]
Length = 357
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/323 (58%), Positives = 246/323 (76%), Gaps = 5/323 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+TGKLG P TS S + PWVEKYRP+T++DV+EQ EVV VL++C
Sbjct: 1 MQAFLKTGKLGPGEPKKVSTSRSKEEHS-GSATPWVEKYRPRTVEDVVEQAEVVEVLRQC 59
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
L+G D P+ LFYGPPGTGKTST++AA QLFG +Y+ER+LELNASD+RGIQV+RDK+K+F
Sbjct: 60 LTGGDFPNLLFYGPPGTGKTSTILAAARQLFGSLYKERLLELNASDERGIQVVRDKIKSF 119
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
AQ TA G DGK CPPFKI+ILDEADSMT+AAQAALRRTMEKE+ STRFCLICNYVS I
Sbjct: 120 AQLTAGGMRDDGKGCPPFKIIILDEADSMTNAAQAALRRTMEKESHSTRFCLICNYVSRI 179
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I+PLTSRC+KFRFKPL E+ ++ RL+YIC++E + L +VE SGGD+RRAITCLQ
Sbjct: 180 IEPLTSRCTKFRFKPLGEDKIVERLEYICKEEDLKATKPVLLKIVEASGGDLRRAITCLQ 239
Query: 241 SCARLKG-GEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQ 296
S RLKG G I +D++E+ G++P W++ L+ K + E++I+ +LEAY+ +Q
Sbjct: 240 SITRLKGKGIDITVDDIIEIIGIVPDKWLDDLMNVCKTKDYSKAEEFIDQFMLEAYATSQ 299
Query: 297 LFDQFHDIVMLASSLSDKQKALF 319
+ +Q + ++ ++ L+DKQK L
Sbjct: 300 VIEQLSERIIYSNELTDKQKTLI 322
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/140 (45%), Positives = 96/140 (68%), Gaps = 4/140 (2%)
Query: 316 KALFKALETLVETSGGDMRRAITCLQSCARLKG-GEGIVNEDVLEVTGVIPNPWIEKLL- 373
KA L +VE SGGD+RRAITCLQS RLKG G I +D++E+ G++P+ W++ L+
Sbjct: 214 KATKPVLLKIVEASGGDLRRAITCLQSITRLKGKGIDITVDDIIEIIGIVPDKWLDDLMN 273
Query: 374 --KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 431
K + E++I+ +LEAY+ +Q+ +Q + ++ ++ L+DKQK LI ++L ECN RL
Sbjct: 274 VCKTKDYSKAEEFIDQFMLEAYATSQVIEQLSERIIYSNELTDKQKTLIADRLGECNYRL 333
Query: 432 QDGASEYIQILDLGSIVIKA 451
DG SEYIQ+++L +IKA
Sbjct: 334 LDGGSEYIQLINLCCGIIKA 353
>gi|327282022|ref|XP_003225743.1| PREDICTED: replication factor C subunit 4-like [Anolis
carolinensis]
Length = 364
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/329 (57%), Positives = 246/329 (74%), Gaps = 10/329 (3%)
Query: 1 MEAFLR--TGKLGKDAPSSSKTSVSTSGKT----RNKPVPWVEKYRPKTIDDVIEQQEVV 54
M+AFL+ + K P+ K + +T+G + R +P+PWVEKYRPK +D+V Q+EVV
Sbjct: 1 MQAFLKGPSSISTKPLPAKEKGTAATAGGSGEGKRVRPLPWVEKYRPKCMDEVAFQEEVV 60
Query: 55 SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVI 113
+VLKKCL GADLP+ LFYGPPGTGKTST++AA +LFG +++R+R+LELNASD+RGIQVI
Sbjct: 61 AVLKKCLQGADLPNLLFYGPPGTGKTSTILAAARELFGTELFRQRVLELNASDERGIQVI 120
Query: 114 RDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLI 173
R+KVK FAQ T SG DGK CPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLI
Sbjct: 121 REKVKRFAQLTVSGSRSDGKLCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLI 180
Query: 174 CNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMR 233
CNY+S II+P+TSRCSKFRFKPL++ RL + E+E+V +A+ LV S GD+R
Sbjct: 181 CNYISRIIEPITSRCSKFRFKPLSDKIQRQRLVEVAEKENVAVSSEAISYLVHVSEGDLR 240
Query: 234 RAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILE 290
+AIT LQS RL GG+ + + V E+ GVIP+ ++ +L + SF+ LE ++LI E
Sbjct: 241 KAITLLQSATRLMGGKEVTEKIVTEIAGVIPREMLDGVLASCQSGSFEKLEAVTKNLIDE 300
Query: 291 AYSATQLFDQFHDIVMLASSLSDKQKALF 319
Y+ATQL +Q HD+++ LSDKQK++
Sbjct: 301 GYAATQLINQLHDVIVEREDLSDKQKSII 329
Score = 111 bits (278), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 89/134 (66%), Gaps = 3/134 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
+A+ LV S GD+R+AIT LQS RL GG+ + + V E+ GVIP ++ +L +
Sbjct: 226 EAISYLVHVSEGDLRKAITLLQSATRLMGGKEVTEKIVTEIAGVIPREMLDGVLASCQSG 285
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
SF+ LE ++LI E Y+ATQL +Q HD+++ LSDKQK++I EKLAE + L DG+
Sbjct: 286 SFEKLEAVTKNLIDEGYAATQLINQLHDVIVEREDLSDKQKSIIAEKLAEVDKCLVDGSD 345
Query: 437 EYIQILDLGSIVIK 450
E++Q+ L ++V++
Sbjct: 346 EFLQLTSLCAVVME 359
>gi|344282143|ref|XP_003412834.1| PREDICTED: replication factor C subunit 4 [Loxodonta africana]
Length = 373
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/328 (57%), Positives = 243/328 (74%), Gaps = 9/328 (2%)
Query: 1 MEAFLRTGKLG-KDAPSSSKTSVSTSGKT----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + K A + + +T+G + + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGASVSTKPALTKDRGVAATAGSSGENKKAKPVPWVEKYRPKRVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRSRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK+FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKSFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ T RL I E+E+V + + L+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKTQQQRLLDIAEKENVKITNEGIAYLINVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEA 291
AIT LQS RL G+ + + ++++ GVIP I+ + V SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTAGKEVTEKVIMDIAGVIPAETIDGIFAVCQSGSFDKLEAVVKDLIDEG 300
Query: 292 YSATQLFDQFHDIVMLASSLSDKQKALF 319
+ ATQL +QFHD+V+ LSDKQK++
Sbjct: 301 HPATQLVNQFHDVVVENHHLSDKQKSVI 328
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 85/129 (65%), Gaps = 3/129 (2%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVL 381
L+ S GD+R+AIT LQS RL G+ + + ++++ GVIP I+ + V SF L
Sbjct: 230 LINVSEGDLRKAITFLQSATRLTAGKEVTEKVIMDIAGVIPAETIDGIFAVCQSGSFDKL 289
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
E ++DLI E + ATQL +QFHD+V+ LSDKQK++I EKLAE + L DGA E++Q+
Sbjct: 290 EAVVKDLIDEGHPATQLVNQFHDVVVENHHLSDKQKSVITEKLAEVDQCLADGADEHLQL 349
Query: 442 LDLGSIVIK 450
+ L + V++
Sbjct: 350 ISLCATVMQ 358
>gi|321456941|gb|EFX68037.1| hypothetical protein DAPPUDRAFT_301682 [Daphnia pulex]
Length = 356
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/320 (57%), Positives = 238/320 (74%), Gaps = 4/320 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTS-GKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKK 59
M++FL+TGKL + S + + + ++ +PWVEKYRP+TID+V Q+EVV+VL+K
Sbjct: 1 MDSFLKTGKLSNQSKGSGVPLLPGNVEEKKHSLIPWVEKYRPRTIDEVSYQEEVVAVLQK 60
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119
L GADLP+ LFYGPPGTGKTST++AA LFGD+Y++R+LELNASD+RGIQV+R+KVK
Sbjct: 61 SLQGADLPNLLFYGPPGTGKTSTILAAARDLFGDIYKDRVLELNASDERGIQVVREKVKI 120
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
F+Q+T S DGK CPPFKIVILDEADSMT AAQAALRRTMEKETKSTRFCLICNYVS
Sbjct: 121 FSQRTVSSVRPDGKQCPPFKIVILDEADSMTGAAQAALRRTMEKETKSTRFCLICNYVSR 180
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+PLTSRCSKFRFKPL ++ RL++IC E++ C + LE+L+E S GD+RRAIT L
Sbjct: 181 IIEPLTSRCSKFRFKPLPREILVKRLEHICIAENMSCSEEVLESLIEASEGDLRRAITFL 240
Query: 240 QSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK---VDSFQVLEKYIEDLILEAYSATQ 296
QS A L ED+ E+TG +P WIE LL+ S+ ++ +I + E +S +Q
Sbjct: 241 QSIANLNSEACPTIEDIYEITGRVPSCWIEGLLEKCTSGSYDAMQSFINNFSAEGFSVSQ 300
Query: 297 LFDQFHDIVMLASSLSDKQK 316
L +Q H+ ++ ++ LS KQK
Sbjct: 301 LLNQLHERIVFSTELSSKQK 320
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 86/135 (63%), Gaps = 3/135 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VD 376
+ LE+L+E S GD+RRAIT LQS A L ED+ E+TG +P+ WIE LL+
Sbjct: 220 EVLESLIEASEGDLRRAITFLQSIANLNSEACPTIEDIYEITGRVPSCWIEGLLEKCTSG 279
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
S+ ++ +I + E +S +QL +Q H+ ++ ++ LS KQK +I EKLA C+ RL +GA
Sbjct: 280 SYDAMQSFINNFSAEGFSVSQLLNQLHERIVFSTELSSKQKNVICEKLAICDHRLAEGAD 339
Query: 437 EYIQILDLGSIVIKA 451
E +Q+LDL ++ +
Sbjct: 340 EQLQLLDLSCTIMNS 354
>gi|395839806|ref|XP_003792767.1| PREDICTED: replication factor C subunit 4 [Otolemur garnettii]
Length = 365
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/329 (57%), Positives = 241/329 (73%), Gaps = 10/329 (3%)
Query: 1 MEAFLRTGKLG------KDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVV 54
M+AFL+ + KD + T+ S+ + KPVPWVEKYRPK++D+V Q EVV
Sbjct: 1 MQAFLKGTSISTKPPVTKDHRGVAATAGSSGENKKAKPVPWVEKYRPKSVDEVAFQDEVV 60
Query: 55 SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVI 113
+VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQVI
Sbjct: 61 AVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVI 120
Query: 114 RDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLI 173
R+KVK FAQ T SG DGK CPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLI
Sbjct: 121 REKVKNFAQLTVSGSRSDGKLCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLI 180
Query: 174 CNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMR 233
CNYVS II+PLTSRCSKFRFKPL++ RL I E+E+V + + LV+ S GD+R
Sbjct: 181 CNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLNITEKENVKISSEGIAYLVKVSEGDLR 240
Query: 234 RAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILE 290
+AIT LQS RL GG+ I E + ++ GVIP I+ + + SF LE ++DLI+E
Sbjct: 241 KAITFLQSATRLTGGKEITEEVITDIAGVIPSETIDGVFAACQSGSFDKLETVVKDLIIE 300
Query: 291 AYSATQLFDQFHDIVMLASSLSDKQKALF 319
++ATQL +Q HD+V+ +LSDKQK++
Sbjct: 301 GHAATQLVNQLHDVVVENDTLSDKQKSII 329
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 89/129 (68%), Gaps = 3/129 (2%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVL 381
LV+ S GD+R+AIT LQS RL GG+ I E + ++ GVIP+ I+ + + SF L
Sbjct: 231 LVKVSEGDLRKAITFLQSATRLTGGKEITEEVITDIAGVIPSETIDGVFAACQSGSFDKL 290
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
E ++DLI+E ++ATQL +Q HD+V+ +LSDKQK++I EKLAE + L DGA E++Q+
Sbjct: 291 ETVVKDLIIEGHAATQLVNQLHDVVVENDTLSDKQKSIITEKLAEADKCLADGADEHLQL 350
Query: 442 LDLGSIVIK 450
+ L + V++
Sbjct: 351 ISLCATVMQ 359
>gi|57529590|ref|NP_001006550.1| replication factor C subunit 4 [Gallus gallus]
gi|53136906|emb|CAG32782.1| hypothetical protein RCJMB04_37a17 [Gallus gallus]
Length = 359
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 193/334 (57%), Positives = 243/334 (72%), Gaps = 9/334 (2%)
Query: 1 MEAFLR-TGKLGKDAPSSSKTSVSTSGKTRNK--PVPWVEKYRPKTIDDVIEQQEVVSVL 57
M+AFL+ + P++ + S + S NK PVPWVEKYRPK +D+V Q EVV+VL
Sbjct: 1 MQAFLKGPSSISSKPPAAKERSAAGSSGEGNKLKPVPWVEKYRPKNVDEVAFQDEVVAVL 60
Query: 58 KKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDK 116
KK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R+R+LELNASD+RGIQVIR+K
Sbjct: 61 KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRQRVLELNASDERGIQVIREK 120
Query: 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
VK FAQ TASG DGK CPPFKIVILDEADSMT AAQ ALRRTMEKE+K+TRFCLICNY
Sbjct: 121 VKAFAQLTASGSRADGKVCPPFKIVILDEADSMTSAAQGALRRTMEKESKTTRFCLICNY 180
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
+S II+PLTSRCSKFRFKPL++ RL + E+E+V +A+ LV+ S GD+R+AI
Sbjct: 181 ISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAI 240
Query: 237 TCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYS 293
T LQS RL GG+ I + V E+ GVIP+ I+ LL SF+ LE ++LI E Y+
Sbjct: 241 TYLQSATRLMGGKEITEKTVTEIAGVIPRETIDGLLSACSSGSFEKLETVAKNLINEGYA 300
Query: 294 ATQLFDQFHDIVMLASSLSDKQKALFKALETLVE 327
QL +Q HDIV+ + SDKQK++ +E L E
Sbjct: 301 VAQLVNQLHDIVVESEDFSDKQKSII--VEKLAE 332
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 75/192 (39%), Positives = 109/192 (56%), Gaps = 9/192 (4%)
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLF------DQFHDIVMLASSLSDKQKALFKA 321
+EK K F ++ YI +I S F D+ +L S + K +A
Sbjct: 165 MEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKENVKITSEA 224
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSF 378
+ LV+ S GD+R+AIT LQS RL GG+ I + V E+ GVIP I+ LL SF
Sbjct: 225 VSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTEIAGVIPRETIDGLLSACSSGSF 284
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
+ LE ++LI E Y+ QL +Q HDIV+ + SDKQK++I+EKLAE + L DGA EY
Sbjct: 285 EKLETVAKNLINEGYAVAQLVNQLHDIVVESEDFSDKQKSIIVEKLAEVDKCLADGADEY 344
Query: 439 IQILDLGSIVIK 450
+Q++ L ++V++
Sbjct: 345 LQLISLCALVMQ 356
>gi|57109940|ref|XP_535837.1| PREDICTED: replication factor C subunit 4 [Canis lupus familiaris]
Length = 363
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/327 (57%), Positives = 240/327 (73%), Gaps = 8/327 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT----RNKPVPWVEKYRPKTIDDVIEQQEVVSV 56
M+AFL+ + P + +T+G + + KPVPWVEKYRPK +D+V Q+EVV+V
Sbjct: 1 MQAFLKGTSVSTKPPLKDRGIAATAGSSGENKKTKPVPWVEKYRPKCVDEVAFQEEVVAV 60
Query: 57 LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRD 115
LKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R+
Sbjct: 61 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 120
Query: 116 KVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175
KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICN
Sbjct: 121 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 180
Query: 176 YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRA 235
YVS II+PLTSRCSKFRFKPL++ RL I ++E V + + LV+ S GD+R+A
Sbjct: 181 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKVSNEGIAYLVKVSEGDLRKA 240
Query: 236 ITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEAY 292
IT LQS RL GG+ I + + ++ GVIP I+ + + SF LE ++DLI E +
Sbjct: 241 ITFLQSATRLTGGKEITEKVITDIAGVIPAGTIDGIFAACQSGSFDKLEAVVKDLIDEGH 300
Query: 293 SATQLFDQFHDIVMLASSLSDKQKALF 319
+ATQL QFHD+V+ +LSDKQK++
Sbjct: 301 AATQLVSQFHDVVVENDNLSDKQKSII 327
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 95/145 (65%), Gaps = 5/145 (3%)
Query: 311 LSDKQ--KALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW 368
++DK+ K + + LV+ S GD+R+AIT LQS RL GG+ I + + ++ GVIP
Sbjct: 213 IADKEHVKVSNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAGT 272
Query: 369 IEKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 425
I+ + + SF LE ++DLI E ++ATQL QFHD+V+ +LSDKQK++I EKLA
Sbjct: 273 IDGIFAACQSGSFDKLEAVVKDLIDEGHAATQLVSQFHDVVVENDNLSDKQKSIITEKLA 332
Query: 426 ECNARLQDGASEYIQILDLGSIVIK 450
E + L DGA E++Q++ L + V++
Sbjct: 333 EADKCLADGADEHLQLISLCATVMQ 357
>gi|348582722|ref|XP_003477125.1| PREDICTED: replication factor C subunit 4-like [Cavia porcellus]
Length = 363
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/327 (57%), Positives = 239/327 (73%), Gaps = 8/327 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT----RNKPVPWVEKYRPKTIDDVIEQQEVVSV 56
M+AFL+ + + + +T+G + + KP+PWVEKYRPK +D+V Q+EVV+V
Sbjct: 1 MQAFLKGTSITTKPSAKDRGVTATAGSSGENKKAKPIPWVEKYRPKCVDEVAFQEEVVAV 60
Query: 57 LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRD 115
LKK L GADLP+ LFYGPPGTGKTST++AA +LFG D++R R+LELNASD+RGIQV+R+
Sbjct: 61 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPDLFRSRVLELNASDERGIQVVRE 120
Query: 116 KVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175
KVK FAQ SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICN
Sbjct: 121 KVKNFAQLAVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKATRFCLICN 180
Query: 176 YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRA 235
YVS II+PLTSRCSKFRFKPL++ RL I E+E+V + +E LV+ S GD+R+A
Sbjct: 181 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISNEGIEYLVKVSEGDLRKA 240
Query: 236 ITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEAY 292
IT LQS RL GG+ ++ + + ++ GVIP I + K SF LE ++DLI E +
Sbjct: 241 ITFLQSATRLTGGKEVMEKVITDIAGVIPAETIGGIFAACKSGSFDKLEAAVKDLINEGH 300
Query: 293 SATQLFDQFHDIVMLASSLSDKQKALF 319
+ATQL Q HD V+ +LSDKQK++
Sbjct: 301 AATQLVSQLHDAVVENDNLSDKQKSII 327
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 104/186 (55%), Gaps = 9/186 (4%)
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLF------DQFHDIVMLASSLSDKQKALFKA 321
+EK K F ++ Y+ +I S F D+ +L + + K +
Sbjct: 166 MEKESKATRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISNEG 225
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSF 378
+E LV+ S GD+R+AIT LQS RL GG+ ++ + + ++ GVIP I + K SF
Sbjct: 226 IEYLVKVSEGDLRKAITFLQSATRLTGGKEVMEKVITDIAGVIPAETIGGIFAACKSGSF 285
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
LE ++DLI E ++ATQL Q HD V+ +LSDKQK++I EKLAE + L DGA EY
Sbjct: 286 DKLEAAVKDLINEGHAATQLVSQLHDAVVENDNLSDKQKSIITEKLAEVDKCLTDGADEY 345
Query: 439 IQILDL 444
+Q++ L
Sbjct: 346 LQLISL 351
>gi|126338206|ref|XP_001370165.1| PREDICTED: replication factor C subunit 4 [Monodelphis domestica]
Length = 366
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/334 (56%), Positives = 242/334 (72%), Gaps = 20/334 (5%)
Query: 1 MEAFLR-----------TGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIE 49
M+AFL+ T G AP S ++ R KPVPWVEKYRPK +D+V
Sbjct: 1 MQAFLKGPASISTKPPPTKDRGPSAPQGS-----SAESRRAKPVPWVEKYRPKCVDEVAF 55
Query: 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDR 108
Q+EVV+VLKK L GADLP+ LFYGPPGTGKTST++AA +L+G +++R+R+LELNASD+R
Sbjct: 56 QEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELFRQRVLELNASDER 115
Query: 109 GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKST 168
GIQVIR+KVKTFAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+T
Sbjct: 116 GIQVIREKVKTFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTT 175
Query: 169 RFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETS 228
RFCLICNYVS II+PLTSRCSKFRFKPL++ RL I E+E+V + + + LV+ S
Sbjct: 176 RFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQHQRLLDISEKENVKINNEGIAYLVKVS 235
Query: 229 GGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIE 285
GD+R+AIT LQS RL GG+ + + + E+ GV+P I + + SF+ LE ++
Sbjct: 236 EGDLRKAITFLQSATRLTGGQEVTEKVITEIAGVVPTGTITGIFYACQSGSFEKLEALVK 295
Query: 286 DLILEAYSATQLFDQFHDIVMLASSLSDKQKALF 319
DLI E ++ATQL +Q HD+V+ L+DKQK++
Sbjct: 296 DLIDEGHAATQLINQLHDVVVEKDDLTDKQKSII 329
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 108/192 (56%), Gaps = 9/192 (4%)
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLF------DQFHDIVMLASSLSDKQKALFKA 321
+EK K F ++ Y+ +I S F D+ +L S + K +
Sbjct: 168 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQHQRLLDISEKENVKINNEG 227
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSF 378
+ LV+ S GD+R+AIT LQS RL GG+ + + + E+ GV+P I + + SF
Sbjct: 228 IAYLVKVSEGDLRKAITFLQSATRLTGGQEVTEKVITEIAGVVPTGTITGIFYACQSGSF 287
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
+ LE ++DLI E ++ATQL +Q HD+V+ L+DKQK++I EKLAE + L DGA E+
Sbjct: 288 EKLEALVKDLIDEGHAATQLINQLHDVVVEKDDLTDKQKSIITEKLAEVDKCLADGADEH 347
Query: 439 IQILDLGSIVIK 450
+Q++ L + V++
Sbjct: 348 LQLISLCATVMQ 359
>gi|224060747|ref|XP_002196271.1| PREDICTED: replication factor C subunit 4 [Taeniopygia guttata]
Length = 362
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/324 (58%), Positives = 241/324 (74%), Gaps = 7/324 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSK--TSVSTSGK-TRNKPVPWVEKYRPKTIDDVIEQQEVVSVL 57
M+AFL+ P ++K + +SG+ R KP+PWVEKYRPK +D+V Q EVV+VL
Sbjct: 1 MQAFLKGPASISTKPVAAKEKNAAGSSGEGKRAKPIPWVEKYRPKNVDEVAFQDEVVAVL 60
Query: 58 KKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDK 116
KK L GADLP+ LFYGPPGTGKTST++AA +LFG D++R+R+LELNASD+RGIQVIR+K
Sbjct: 61 KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPDLFRQRVLELNASDERGIQVIREK 120
Query: 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
VK FAQ TASG DGK CPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICNY
Sbjct: 121 VKAFAQLTASGSRSDGKMCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY 180
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
+S II+PLTSRCSKFRFKPL+++ RL + E+E V +A+ LV+ S GD+R+AI
Sbjct: 181 ISRIIEPLTSRCSKFRFKPLSDSIQQQRLLDVSEKEHVKISNEAISYLVKVSEGDLRKAI 240
Query: 237 TCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEAYS 293
T LQS RL GG+ I + + E+ GVIPK I++LL + SF+ LE ++LI E ++
Sbjct: 241 TFLQSATRLMGGKEITEKIITEIAGVIPKETIDELLLGCQSGSFEKLETLAKNLINEGFA 300
Query: 294 ATQLFDQFHDIVMLASSLSDKQKA 317
QL +Q HD ++ + SDKQK+
Sbjct: 301 VAQLVNQLHDTIVESEDYSDKQKS 324
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 108/192 (56%), Gaps = 9/192 (4%)
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLF------DQFHDIVMLASSLSDKQKALFKA 321
+EK K F ++ YI +I S F D +L S + K +A
Sbjct: 165 MEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDSIQQQRLLDVSEKEHVKISNEA 224
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSF 378
+ LV+ S GD+R+AIT LQS RL GG+ I + + E+ GVIP I++LL + SF
Sbjct: 225 ISYLVKVSEGDLRKAITFLQSATRLMGGKEITEKIITEIAGVIPKETIDELLLGCQSGSF 284
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
+ LE ++LI E ++ QL +Q HD ++ + SDKQK+ I+EKLAE + L DGA E+
Sbjct: 285 EKLETLAKNLINEGFAVAQLVNQLHDTIVESEDYSDKQKSAIVEKLAEVDKCLADGADEF 344
Query: 439 IQILDLGSIVIK 450
+Q++ L ++V++
Sbjct: 345 LQLMSLCALVMQ 356
>gi|326926086|ref|XP_003209236.1| PREDICTED: replication factor C subunit 4-like [Meleagris
gallopavo]
Length = 362
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/334 (57%), Positives = 245/334 (73%), Gaps = 9/334 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSK--TSVSTSGK-TRNKPVPWVEKYRPKTIDDVIEQQEVVSVL 57
M+AFL+ P ++K ++ +SG+ R KP+PWVEKYRPK +D+V Q EVV+VL
Sbjct: 1 MQAFLKGPSSISTKPPAAKERSAAGSSGEGKRLKPIPWVEKYRPKNVDEVAFQDEVVAVL 60
Query: 58 KKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDK 116
KK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R+R+LELNASD+RGIQVIR+K
Sbjct: 61 KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRQRVLELNASDERGIQVIREK 120
Query: 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
VK FAQ TASG DG+ CPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICNY
Sbjct: 121 VKAFAQLTASGSRADGEVCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY 180
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
+S II+PLTSRCSKFRFKPL++ RL + E+E+V +A+ LV+ S GD+R+AI
Sbjct: 181 ISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKENVKITSEAVSYLVKVSEGDLRKAI 240
Query: 237 TCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYS 293
T LQS RL GG+ I + V E+ GVIP+ I+ LL SF+ LE ++LI E Y+
Sbjct: 241 TYLQSATRLMGGKEITEKTVTEIAGVIPRETIDGLLSACWSGSFEKLETVAKNLISEGYA 300
Query: 294 ATQLFDQFHDIVMLASSLSDKQKALFKALETLVE 327
QL Q HD+V+ + SDKQK++ +E L E
Sbjct: 301 VAQLISQLHDLVVESEDFSDKQKSII--VEKLAE 332
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 108/192 (56%), Gaps = 9/192 (4%)
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLF------DQFHDIVMLASSLSDKQKALFKA 321
+EK K F ++ YI +I S F D+ +L S + K +A
Sbjct: 165 MEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKENVKITSEA 224
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSF 378
+ LV+ S GD+R+AIT LQS RL GG+ I + V E+ GVIP I+ LL SF
Sbjct: 225 VSYLVKVSEGDLRKAITYLQSATRLMGGKEITEKTVTEIAGVIPRETIDGLLSACWSGSF 284
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
+ LE ++LI E Y+ QL Q HD+V+ + SDKQK++I+EKLAE + L DGA EY
Sbjct: 285 EKLETVAKNLISEGYAVAQLISQLHDLVVESEDFSDKQKSIIVEKLAEVDKCLADGADEY 344
Query: 439 IQILDLGSIVIK 450
+Q++ L ++V++
Sbjct: 345 LQLISLCALVMQ 356
>gi|440891701|gb|ELR45251.1| Replication factor C subunit 4 [Bos grunniens mutus]
Length = 364
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/328 (56%), Positives = 240/328 (73%), Gaps = 9/328 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ + ++ + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGASISTKPPPTKDRGVTATARSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I ++E V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVQVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ + + + ++ GV+P I+ + + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEVTEKVITDIAGVVPAKTIDGVFAACQSGSFDKLEAVVKDLINEG 300
Query: 292 YSATQLFDQFHDIVMLASSLSDKQKALF 319
++ATQL +Q HD+V+ +LSDKQK++
Sbjct: 301 HAATQLVNQLHDVVVENDNLSDKQKSII 328
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 87/129 (67%), Gaps = 3/129 (2%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVL 381
LV+ S GD+R+AIT LQS RL GG+ + + + ++ GV+P I+ + + SF L
Sbjct: 230 LVQVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAGVVPAKTIDGVFAACQSGSFDKL 289
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
E ++DLI E ++ATQL +Q HD+V+ +LSDKQK++I EKLAE + L DGA E++Q+
Sbjct: 290 EAVVKDLINEGHAATQLVNQLHDVVVENDNLSDKQKSIITEKLAEVDKCLADGADEHLQL 349
Query: 442 LDLGSIVIK 450
+ L + V++
Sbjct: 350 ISLCATVMQ 358
>gi|317575745|ref|NP_001187540.1| replication factor C subunit 4 [Ictalurus punctatus]
gi|308323307|gb|ADO28790.1| replication factor c subunit 4 [Ictalurus punctatus]
Length = 358
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/324 (57%), Positives = 239/324 (73%), Gaps = 7/324 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKK 59
M+AFL+ G P K + S+SG+ R KPVPWVEKYRPK +D+V Q+EVV+VLKK
Sbjct: 1 MQAFLKGSTQGVK-PQKDKATASSSGENKRQKPVPWVEKYRPKCVDEVAFQEEVVAVLKK 59
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVK 118
L GADLP+ LFYGPPGTGKTST++AA +L+G ++YR+R+LELNASD+RGIQVIR+KVK
Sbjct: 60 SLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVIREKVK 119
Query: 119 TFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS 178
FAQ T +G DGK CPPFKI+ILDEADSMT AAQAALRRTMEKE+++TRFCLICNYVS
Sbjct: 120 NFAQLTVAGTRTDGKSCPPFKIIILDEADSMTGAAQAALRRTMEKESRTTRFCLICNYVS 179
Query: 179 CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITC 238
II+PLTSRCSKFRFKPL RL IC +E++ + ++ LV+ S GD+R+AIT
Sbjct: 180 RIIEPLTSRCSKFRFKPLTNEVQQERLLEICAKENLKYSKEGIDALVKVSEGDLRKAITL 239
Query: 239 LQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSAT 295
LQS AR + I V+E+ GV+P IE LL+ +F+ LE +++L+ E Y+AT
Sbjct: 240 LQSTARFSAEKEITESLVIEIAGVVPPKVIENLLQTCYKGNFEKLEVAVKNLVDEGYAAT 299
Query: 296 QLFDQFHDIVMLASSLSDKQKALF 319
Q+ QFHD++ + L DKQK++
Sbjct: 300 QILSQFHDVI-IEEKLGDKQKSVI 322
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 89/134 (66%), Gaps = 4/134 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+ ++ LV+ S GD+R+AIT LQS AR + I V+E+ GV+P IE LL+
Sbjct: 220 EGIDALVKVSEGDLRKAITLLQSTARFSAEKEITESLVIEIAGVVPPKVIENLLQTCYKG 279
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+F+ LE +++L+ E Y+ATQ+ QFHD+++ L DKQK++I EK+A + L DGA
Sbjct: 280 NFEKLEVAVKNLVDEGYAATQILSQFHDVIIE-EKLGDKQKSVITEKMAVVDKCLVDGAD 338
Query: 437 EYIQILDLGSIVIK 450
EY+Q+L+L S++++
Sbjct: 339 EYLQLLNLCSVIMQ 352
>gi|426217726|ref|XP_004003103.1| PREDICTED: replication factor C subunit 4 isoform 1 [Ovis aries]
Length = 364
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/328 (56%), Positives = 240/328 (73%), Gaps = 9/328 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ + ++ + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGASISTKPPPTKDRGVTATARSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I ++E V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ + + + ++ GV+P I+ + + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEVTEKVITDIAGVVPAKTIDGVFAACQSGSFDKLEAVVKDLINEG 300
Query: 292 YSATQLFDQFHDIVMLASSLSDKQKALF 319
++ATQL +Q HD+V+ +LSDKQK++
Sbjct: 301 HAATQLVNQLHDVVVENDNLSDKQKSII 328
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 87/129 (67%), Gaps = 3/129 (2%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVL 381
LV+ S GD+R+AIT LQS RL GG+ + + + ++ GV+P I+ + + SF L
Sbjct: 230 LVKVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAGVVPAKTIDGVFAACQSGSFDKL 289
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
E ++DLI E ++ATQL +Q HD+V+ +LSDKQK++I EKLAE + L DGA E++Q+
Sbjct: 290 EAVVKDLINEGHAATQLVNQLHDVVVENDNLSDKQKSIITEKLAEVDKCLADGADEHLQL 349
Query: 442 LDLGSIVIK 450
+ L + V++
Sbjct: 350 ISLCATVMQ 358
>gi|308322095|gb|ADO28185.1| replication factor c subunit 4 [Ictalurus furcatus]
Length = 358
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/324 (57%), Positives = 239/324 (73%), Gaps = 7/324 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKK 59
M+AFL+ G P K + S+SG+ R KPVPWVEKYRPK +D+V Q+EVV+VLKK
Sbjct: 1 MQAFLKGSTQGVK-PQKDKATASSSGENKRQKPVPWVEKYRPKCVDEVAFQEEVVAVLKK 59
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVK 118
L GADLP+ LFYGPPGTGKTST++AA +L+G ++YR+R+LELNASD+RGIQVIR+KVK
Sbjct: 60 SLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVIREKVK 119
Query: 119 TFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS 178
FAQ T +G DGK CPPFKI+ILDEADSMT AAQAALRRTMEKE+++TRFCLICNYVS
Sbjct: 120 NFAQLTVAGTRTDGKSCPPFKIIILDEADSMTGAAQAALRRTMEKESRTTRFCLICNYVS 179
Query: 179 CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITC 238
II+PLTSRCSKFRFKPL RL IC +E++ + ++ LV+ S GD+R+AIT
Sbjct: 180 RIIEPLTSRCSKFRFKPLTNEVQQERLLEICAKENLKYSKEGIDALVKVSEGDLRKAITL 239
Query: 239 LQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSAT 295
LQS AR + I V+E+ GV+P IE LL+ +F+ LE +++L+ E Y+AT
Sbjct: 240 LQSTARFGAEKEITESLVIEIAGVVPPKVIENLLQTCYKGNFEKLEVAVKNLVDEGYAAT 299
Query: 296 QLFDQFHDIVMLASSLSDKQKALF 319
Q+ QFHD++ + L DKQK++
Sbjct: 300 QILSQFHDVI-IEEKLGDKQKSVI 322
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 89/134 (66%), Gaps = 4/134 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+ ++ LV+ S GD+R+AIT LQS AR + I V+E+ GV+P IE LL+
Sbjct: 220 EGIDALVKVSEGDLRKAITLLQSTARFGAEKEITESLVIEIAGVVPPKVIENLLQTCYKG 279
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+F+ LE +++L+ E Y+ATQ+ QFHD+++ L DKQK++I EK+A + L DGA
Sbjct: 280 NFEKLEVAVKNLVDEGYAATQILSQFHDVIIE-EKLGDKQKSVITEKMAVVDKCLVDGAD 338
Query: 437 EYIQILDLGSIVIK 450
EY+Q+L+L S++++
Sbjct: 339 EYLQLLNLCSVIMQ 352
>gi|301758022|ref|XP_002914857.1| PREDICTED: replication factor C subunit 4-like [Ailuropoda
melanoleuca]
gi|281350719|gb|EFB26303.1| hypothetical protein PANDA_002794 [Ailuropoda melanoleuca]
Length = 363
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/327 (56%), Positives = 240/327 (73%), Gaps = 8/327 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT----RNKPVPWVEKYRPKTIDDVIEQQEVVSV 56
M+AFL+ + + +T+G + + KPVPWVEKYRPK +D++ Q+EVV+V
Sbjct: 1 MQAFLKGTSVSTKPSLKDRGVAATAGSSGENKKTKPVPWVEKYRPKCVDEIAFQEEVVAV 60
Query: 57 LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRD 115
LKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R+
Sbjct: 61 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 120
Query: 116 KVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175
KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICN
Sbjct: 121 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 180
Query: 176 YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRA 235
YVS II+PLTSRCSKFRFKPL++ RL I ++E V + + LV+ S GD+R+A
Sbjct: 181 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRKA 240
Query: 236 ITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEAY 292
IT LQS RL GG+ I + + ++ GVIP I+ + + SF LE ++DLI E +
Sbjct: 241 ITFLQSATRLTGGKEITEKVITDIAGVIPAQTIDGIFAACQSGSFDKLEAVVKDLIDEGH 300
Query: 293 SATQLFDQFHDIVMLASSLSDKQKALF 319
+ATQL +QFHD+V+ +LSDKQK++
Sbjct: 301 AATQLVNQFHDVVVENDNLSDKQKSII 327
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 88/129 (68%), Gaps = 3/129 (2%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVL 381
LV+ S GD+R+AIT LQS RL GG+ I + + ++ GVIP I+ + + SF L
Sbjct: 229 LVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAQTIDGIFAACQSGSFDKL 288
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
E ++DLI E ++ATQL +QFHD+V+ +LSDKQK++I EKLAE + L DGA E++Q+
Sbjct: 289 EAVVKDLIDEGHAATQLVNQFHDVVVENDNLSDKQKSIITEKLAEVDKCLADGADEHLQL 348
Query: 442 LDLGSIVIK 450
+ L + V++
Sbjct: 349 ISLCATVMQ 357
>gi|196003908|ref|XP_002111821.1| hypothetical protein TRIADDRAFT_50137 [Trichoplax adhaerens]
gi|190585720|gb|EDV25788.1| hypothetical protein TRIADDRAFT_50137 [Trichoplax adhaerens]
Length = 373
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/312 (58%), Positives = 231/312 (74%), Gaps = 17/312 (5%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
+ N VPWVEKYRP++IDDV Q EVVSVL+KCL GADLP+FLFYGPPGTGKTST++AA
Sbjct: 29 SSNVSVPWVEKYRPRSIDDVAHQDEVVSVLRKCLQGADLPNFLFYGPPGTGKTSTILAAA 88
Query: 88 HQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
L+G D+YR R+LELNASDDRGIQVIR+K+KTFAQ + + DG PCPPFKI+ILDEA
Sbjct: 89 RHLYGSDIYRSRVLELNASDDRGIQVIREKIKTFAQLSVANQRPDGTPCPPFKIIILDEA 148
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
DSMTHAAQAALRRTMEK +K+TRFCLICNYVS II+PLTSRCSKFRFKPL EN +L L
Sbjct: 149 DSMTHAAQAALRRTMEKYSKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLPENILLHHLS 208
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG----- 261
I E+E++ CD +AL ++ S GDMR+AIT +QS +RL + I +E ++E G
Sbjct: 209 AISEKENLDCDKQALRNIISISEGDMRKAITYIQSVSRLYNDKRITSERIIESAGVTGLY 268
Query: 262 --------VIPKPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASS 310
VIP I+ +L +++S++ L+K I+++I ++YSA QL Q HD ++
Sbjct: 269 FSIASATLVIPDALIDSILETCRLNSYEKLDKIIQNVIADSYSAYQLLSQLHDKIVDVDE 328
Query: 311 LSDKQKALFKAL 322
LSDK+K+ +
Sbjct: 329 LSDKKKSFLAQM 340
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 90/147 (61%), Gaps = 16/147 (10%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV-------------IPN 366
+AL ++ S GDMR+AIT +QS +RL + I +E ++E GV IP+
Sbjct: 221 QALRNIISISEGDMRKAITYIQSVSRLYNDKRITSERIIESAGVTGLYFSIASATLVIPD 280
Query: 367 PWIEKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 423
I+ +L +++S++ L+K I+++I ++YSA QL Q HD ++ LSDK+K+ + +
Sbjct: 281 ALIDSILETCRLNSYEKLDKIIQNVIADSYSAYQLLSQLHDKIVDVDELSDKKKSFLAQM 340
Query: 424 LAECNARLQDGASEYIQILDLGSIVIK 450
+AE + L DGA EY+Q++ L S +++
Sbjct: 341 MAEIDKCLMDGADEYLQMMKLCSHIMQ 367
>gi|291400267|ref|XP_002716498.1| PREDICTED: replication factor C 4 [Oryctolagus cuniculus]
Length = 364
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/328 (57%), Positives = 236/328 (71%), Gaps = 9/328 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ P + V+ S + + KPVPWVEKYRPK +D+V Q+EVVS
Sbjct: 1 MQAFLKGTSASTKLPPTKDRGVAASAGSSAETKKAKPVPWVEKYRPKCVDEVAFQEEVVS 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I E+E+V+ + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVIISNEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ + + ++ GVIP I + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEVTENVITDIAGVIPPETINGIFAACQGGSFDKLEGVVKDLIDEG 300
Query: 292 YSATQLFDQFHDIVMLASSLSDKQKALF 319
++ATQ+ +Q HD+V+ LSDKQK++
Sbjct: 301 HAATQVVNQLHDVVVENDDLSDKQKSII 328
Score = 108 bits (269), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 83/129 (64%), Gaps = 3/129 (2%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVL 381
LV+ S GD+R+AIT LQS RL GG+ + + ++ GVIP I + SF L
Sbjct: 230 LVKVSEGDLRKAITFLQSATRLTGGKEVTENVITDIAGVIPPETINGIFAACQGGSFDKL 289
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
E ++DLI E ++ATQ+ +Q HD+V+ LSDKQK++I EKLAE + L DGA E++Q+
Sbjct: 290 EGVVKDLIDEGHAATQVVNQLHDVVVENDDLSDKQKSIITEKLAEVDKCLADGADEHLQL 349
Query: 442 LDLGSIVIK 450
L L + V++
Sbjct: 350 LSLCATVMQ 358
>gi|449277649|gb|EMC85743.1| Replication factor C subunit 4 [Columba livia]
Length = 362
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/324 (58%), Positives = 240/324 (74%), Gaps = 7/324 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKT--SVSTSGK-TRNKPVPWVEKYRPKTIDDVIEQQEVVSVL 57
M+AFL+ P ++K + +SG+ R KP+PWVEKYRPK +D+V Q EVV+VL
Sbjct: 1 MQAFLKGPSSISTRPPAAKEKGAAGSSGEGKRLKPIPWVEKYRPKNVDEVAFQDEVVAVL 60
Query: 58 KKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDK 116
KK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R+R+LELNASD+RGIQVIR+K
Sbjct: 61 KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRQRVLELNASDERGIQVIREK 120
Query: 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
VK FAQ TASG DGK CPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICNY
Sbjct: 121 VKAFAQLTASGSRSDGKVCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY 180
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
+S II+PLTSRCSKFRFKPL++ RL + E+E V +A+ LV+ S GD+R+AI
Sbjct: 181 ISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVAEKEHVKISSEAVSYLVKVSEGDLRKAI 240
Query: 237 TCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYS 293
T LQS RL GG+ I + V E+ GVIPK I++LL V SF+ LE ++LI E Y+
Sbjct: 241 TFLQSATRLMGGKEITEKIVTEIAGVIPKETIDELLSVCQSGSFEKLETLAKNLINEGYA 300
Query: 294 ATQLFDQFHDIVMLASSLSDKQKA 317
QL +Q HD V+ + + DK+K+
Sbjct: 301 VAQLVNQLHDAVVESEAYRDKEKS 324
Score = 111 bits (277), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 72/192 (37%), Positives = 109/192 (56%), Gaps = 9/192 (4%)
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLF------DQFHDIVMLASSLSDKQKALFKA 321
+EK K F ++ YI +I S F D+ +L + + K +A
Sbjct: 165 MEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVAEKEHVKISSEA 224
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSF 378
+ LV+ S GD+R+AIT LQS RL GG+ I + V E+ GVIP I++LL V SF
Sbjct: 225 VSYLVKVSEGDLRKAITFLQSATRLMGGKEITEKIVTEIAGVIPKETIDELLSVCQSGSF 284
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
+ LE ++LI E Y+ QL +Q HD V+ + + DK+K+ I+EKLAE + L DGA EY
Sbjct: 285 EKLETLAKNLINEGYAVAQLVNQLHDAVVESEAYRDKEKSAIVEKLAEVDKCLVDGADEY 344
Query: 439 IQILDLGSIVIK 450
+Q++ L ++V++
Sbjct: 345 LQLMSLCALVMQ 356
>gi|343113485|gb|AEL87701.1| replication factor C 4 [Strongylocentrotus nudus]
Length = 355
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 183/321 (57%), Positives = 242/321 (75%), Gaps = 9/321 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+ G A +SS T G T+ + VPWVEKYRP+T+D+V Q EVV+VLKK
Sbjct: 1 MDAFLKGGSFKSKAATSS-----TGGSTKQRQVPWVEKYRPRTVDEVAYQDEVVAVLKKS 55
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
L GADLP+ LFYGPPGTGKTST++AA +LFG DMYR R+LELNASD+RGIQV+RDKVK
Sbjct: 56 LQGADLPNMLFYGPPGTGKTSTILAASRELFGADMYRSRVLELNASDERGIQVVRDKVKK 115
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ A G DGKP PPFKI+ILDEADSMT+ AQAALRRTMEK++K+T+FCLICNY+S
Sbjct: 116 FAQTAAGGIRPDGKPRPPFKIIILDEADSMTNDAQAALRRTMEKQSKNTKFCLICNYISR 175
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+PLTSRCSKFRFKPL++ +L+ ICE E++ C +AL+ +++ S GDMR++IT L
Sbjct: 176 IIEPLTSRCSKFRFKPLSKPIQGKKLREICEVENINCGEEALDAILKLSEGDMRKSITFL 235
Query: 240 QSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
QS RL+ +GI EDV E+ GVIP I+ L++ S++ L++ +++L+ + YSA+Q
Sbjct: 236 QSVHRLQREDGIRVEDVYEIAGVIPDRIIDDLIQSCYGGSYEKLDEKVQELLQDGYSASQ 295
Query: 297 LFDQFHDIVMLASSLSDKQKA 317
+ +Q DI++ L+D QK+
Sbjct: 296 VVNQIFDIIVERGELTDTQKS 316
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 91/133 (68%), Gaps = 3/133 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+AL+ +++ S GDMR++IT LQS RL+ +GI EDV E+ GVIP+ I+ L++
Sbjct: 215 EALDAILKLSEGDMRKSITFLQSVHRLQREDGIRVEDVYEIAGVIPDRIIDDLIQSCYGG 274
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
S++ L++ +++L+ + YSA+Q+ +Q DI++ L+D QK+ I E+LA + RL DGA
Sbjct: 275 SYEKLDEKVQELLQDGYSASQVVNQIFDIIVERGELTDTQKSAIAERLAVIDKRLCDGAD 334
Query: 437 EYIQILDLGSIVI 449
E +QI+DL ++ +
Sbjct: 335 EGLQIMDLFTLTM 347
>gi|410970795|ref|XP_003991862.1| PREDICTED: replication factor C subunit 4 [Felis catus]
Length = 362
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/326 (57%), Positives = 237/326 (72%), Gaps = 7/326 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNK---PVPWVEKYRPKTIDDVIEQQEVVSVL 57
M+AFL+ + P + + + NK PVPWVEKYRPK +D+V Q+EVV+VL
Sbjct: 1 MQAFLKGTSVSTKPPLKDRVAATAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVL 60
Query: 58 KKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDK 116
KK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R+K
Sbjct: 61 KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREK 120
Query: 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
VK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICNY
Sbjct: 121 VKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY 180
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
VS II+PLTSRCSKFRFKPL++ RL I ++E V + + LV+ S GD+R+AI
Sbjct: 181 VSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRKAI 240
Query: 237 TCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEAYS 293
T LQS RL GG+ I + + ++ GVIP I+ L + SF LE +++LI E ++
Sbjct: 241 TFLQSATRLTGGKEITEKVITDIAGVIPAETIDGLFAACQSGSFDKLEGVVKNLIDEGHA 300
Query: 294 ATQLFDQFHDIVMLASSLSDKQKALF 319
ATQL +Q HD+V+ +LSDKQK++
Sbjct: 301 ATQLVNQLHDVVVENDNLSDKQKSII 326
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 87/129 (67%), Gaps = 3/129 (2%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVL 381
LV+ S GD+R+AIT LQS RL GG+ I + + ++ GVIP I+ L + SF L
Sbjct: 228 LVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAETIDGLFAACQSGSFDKL 287
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
E +++LI E ++ATQL +Q HD+V+ +LSDKQK++I EKLAE + L DGA E++Q+
Sbjct: 288 EGVVKNLIDEGHAATQLVNQLHDVVVENDNLSDKQKSIITEKLAEVDKCLADGADEHLQL 347
Query: 442 LDLGSIVIK 450
+ L + V++
Sbjct: 348 ISLCATVMQ 356
>gi|350591807|ref|XP_003483338.1| PREDICTED: replication factor C subunit 4-like [Sus scrofa]
Length = 364
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/328 (56%), Positives = 240/328 (73%), Gaps = 9/328 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ + ++ + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKPPLTKDRGVAATARSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I ++E V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISDEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ + + + ++ GVIP I+ +L + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEVTEKMITDIAGVIPTETIDGVLAACQSGSFDKLEAVVKDLIDEG 300
Query: 292 YSATQLFDQFHDIVMLASSLSDKQKALF 319
++ATQ +Q HD+V+ +LSDKQK++
Sbjct: 301 HAATQFVNQLHDVVVENDNLSDKQKSVI 328
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 87/129 (67%), Gaps = 3/129 (2%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVL 381
LV+ S GD+R+AIT LQS RL GG+ + + + ++ GVIP I+ +L + SF L
Sbjct: 230 LVKVSEGDLRKAITFLQSATRLTGGKEVTEKMITDIAGVIPTETIDGVLAACQSGSFDKL 289
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
E ++DLI E ++ATQ +Q HD+V+ +LSDKQK++I EKLAE + L DGA E++Q+
Sbjct: 290 EAVVKDLIDEGHAATQFVNQLHDVVVENDNLSDKQKSVITEKLAEADKCLADGADEHLQL 349
Query: 442 LDLGSIVIK 450
+ L + V++
Sbjct: 350 ISLCATVMQ 358
>gi|194222681|ref|XP_001498117.2| PREDICTED: replication factor C subunit 4 [Equus caballus]
Length = 364
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/328 (56%), Positives = 239/328 (72%), Gaps = 9/328 (2%)
Query: 1 MEAFLRTGKLGKDAP-----SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + T+ S+ + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGASISAKPPMPKDRGVAATAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NY+S II+PLTSRCSKFRFKPL++ RL I +E V + + LV+ S GD+R+
Sbjct: 181 NYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAGKEHVKISNEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ + + + ++ GVIP I+ LL + SF LE +++LI E
Sbjct: 241 AITFLQSATRLTGGKEVTEKVITDIAGVIPAETIDGLLAACQSGSFDKLEAAVKNLIDEG 300
Query: 292 YSATQLFDQFHDIVMLASSLSDKQKALF 319
++ATQL +Q HD+++ +LSDKQK++
Sbjct: 301 HAATQLVNQLHDVIVENDNLSDKQKSII 328
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 110/192 (57%), Gaps = 9/192 (4%)
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLF------DQFHDIVMLASSLSDKQKALFKA 321
+EK K F ++ YI +I S F D+ +L + + K +
Sbjct: 167 MEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAGKEHVKISNEG 226
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSF 378
+ LV+ S GD+R+AIT LQS RL GG+ + + + ++ GVIP I+ LL + SF
Sbjct: 227 IAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAGVIPAETIDGLLAACQSGSF 286
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
LE +++LI E ++ATQL +Q HD+++ +LSDKQK++I EKLAE + L DGA E+
Sbjct: 287 DKLEAAVKNLIDEGHAATQLVNQLHDVIVENDNLSDKQKSIITEKLAEVDKCLADGADEH 346
Query: 439 IQILDLGSIVIK 450
+Q++ L + V++
Sbjct: 347 LQLMSLCATVMQ 358
>gi|431838862|gb|ELK00791.1| Replication factor C subunit 4 [Pteropus alecto]
Length = 394
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/328 (57%), Positives = 240/328 (73%), Gaps = 9/328 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVS----TSGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ +SG+ + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 31 MQAFLKGTSISTKPPLTKDRGVAAIAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 90
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 91 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 150
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 151 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 210
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I +E V + + LV+ S GD+R+
Sbjct: 211 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAGKEHVKISNEGVSYLVKVSEGDLRK 270
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ I + + ++ GVIP I+ + + SF LE ++DLI E
Sbjct: 271 AITFLQSATRLTGGKEITEKVITDIAGVIPAETIDGIFAACQSGSFDKLEAVVKDLIDEG 330
Query: 292 YSATQLFDQFHDIVMLASSLSDKQKALF 319
++ATQL +Q HD+++ +LSDKQK++
Sbjct: 331 HAATQLVNQLHDVIVENDNLSDKQKSII 358
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 87/129 (67%), Gaps = 3/129 (2%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVL 381
LV+ S GD+R+AIT LQS RL GG+ I + + ++ GVIP I+ + + SF L
Sbjct: 260 LVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAETIDGIFAACQSGSFDKL 319
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
E ++DLI E ++ATQL +Q HD+++ +LSDKQK++I EKLAE + L DGA E++Q+
Sbjct: 320 EAVVKDLIDEGHAATQLVNQLHDVIVENDNLSDKQKSIITEKLAEVDKCLADGADEHLQL 379
Query: 442 LDLGSIVIK 450
+ L + V++
Sbjct: 380 ISLCATVMQ 388
>gi|296224812|ref|XP_002758207.1| PREDICTED: replication factor C subunit 4 [Callithrix jacchus]
Length = 363
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/328 (57%), Positives = 243/328 (74%), Gaps = 10/328 (3%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVS----TSGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + + V+ +SG+ + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKPPLTKERGVAATAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I E+E+V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAERENVKISDEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ I + + ++ GVIP I+ +L + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVLAACQSGSFDKLEAVVKDLIDEG 300
Query: 292 YSATQLFDQFHDIVMLASSLSDKQKALF 319
++ATQL Q HD+V+ ++L DKQK++
Sbjct: 301 HAATQLVSQLHDVVV-ENNLPDKQKSII 327
Score = 105 bits (262), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 87/129 (67%), Gaps = 4/129 (3%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVL 381
LV+ S GD+R+AIT LQS RL GG+ I + + ++ GVIP I+ +L + SF L
Sbjct: 230 LVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVLAACQSGSFDKL 289
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
E ++DLI E ++ATQL Q HD+V+ ++L DKQK++I EKLAE + L DGA E++Q+
Sbjct: 290 EAVVKDLIDEGHAATQLVSQLHDVVVE-NNLPDKQKSIITEKLAEADKCLADGADEHLQL 348
Query: 442 LDLGSIVIK 450
+ L + V++
Sbjct: 349 ISLCATVMQ 357
>gi|355784873|gb|EHH65724.1| hypothetical protein EGM_02550 [Macaca fascicularis]
Length = 363
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/328 (57%), Positives = 241/328 (73%), Gaps = 10/328 (3%)
Query: 1 MEAFLRTGKLG-KDAPSSSKTSVSTSGKT----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + K P+ + +T+G + + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKSLPTKDRGVAATAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I E+E+V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISDEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ I + ++ GVIP I+ + + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEITERVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG 300
Query: 292 YSATQLFDQFHDIVMLASSLSDKQKALF 319
++ATQ Q HD+V+ ++LSDKQK++
Sbjct: 301 HAATQFVSQLHDVVV-ENNLSDKQKSII 327
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 85/129 (65%), Gaps = 4/129 (3%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVL 381
LV+ S GD+R+AIT LQS RL GG+ I + ++ GVIP I+ + + SF L
Sbjct: 230 LVKVSEGDLRKAITFLQSATRLTGGKEITERVITDIAGVIPAEKIDGVFAACQSGSFDKL 289
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
E ++DLI E ++ATQ Q HD+V+ ++LSDKQK++I EKLAE + L DGA E++Q+
Sbjct: 290 EAVVKDLIDEGHAATQFVSQLHDVVVE-NNLSDKQKSIITEKLAEVDKCLADGADEHLQL 348
Query: 442 LDLGSIVIK 450
+ L + V++
Sbjct: 349 ISLCATVMQ 357
>gi|4506491|ref|NP_002907.1| replication factor C subunit 4 [Homo sapiens]
gi|31881687|ref|NP_853551.1| replication factor C subunit 4 [Homo sapiens]
gi|1703052|sp|P35249.2|RFC4_HUMAN RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 37 kDa subunit; Short=A1 37 kDa
subunit; AltName: Full=Activator 1 subunit 4; AltName:
Full=Replication factor C 37 kDa subunit; Short=RF-C 37
kDa subunit; Short=RFC37
gi|1498256|gb|AAB09785.1| replication factor C, 37-kDa subunit [Homo sapiens]
gi|16924323|gb|AAH17452.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|18645198|gb|AAH24022.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|22532479|gb|AAM97933.1| replication factor C (activator 1) 4 (37kD) [Homo sapiens]
gi|30582813|gb|AAP35633.1| replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|49168606|emb|CAG38798.1| RFC4 [Homo sapiens]
gi|60819475|gb|AAX36501.1| replication factor C 4 [synthetic construct]
gi|61362396|gb|AAX42213.1| replication factor C [synthetic construct]
gi|61362402|gb|AAX42214.1| replication factor C [synthetic construct]
gi|61363130|gb|AAX42340.1| replication factor C 4 [synthetic construct]
gi|119598575|gb|EAW78169.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo
sapiens]
gi|119598576|gb|EAW78170.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo
sapiens]
gi|123993605|gb|ABM84404.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123993735|gb|ABM84469.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123994261|gb|ABM84732.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123999624|gb|ABM87354.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|261860114|dbj|BAI46579.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
Length = 363
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/328 (57%), Positives = 241/328 (73%), Gaps = 10/328 (3%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ S + + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I ++E+V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ I + + ++ GVIP I+ + + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG 300
Query: 292 YSATQLFDQFHDIVMLASSLSDKQKALF 319
++ATQL +Q HD+V+ ++LSDKQK++
Sbjct: 301 HAATQLVNQLHDVVV-ENNLSDKQKSII 327
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 88/129 (68%), Gaps = 4/129 (3%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVL 381
LV+ S GD+R+AIT LQS RL GG+ I + + ++ GVIP I+ + + SF L
Sbjct: 230 LVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKL 289
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
E ++DLI E ++ATQL +Q HD+V+ ++LSDKQK++I EKLAE + L DGA E++Q+
Sbjct: 290 EAVVKDLIDEGHAATQLVNQLHDVVVE-NNLSDKQKSIITEKLAEVDKCLADGADEHLQL 348
Query: 442 LDLGSIVIK 450
+ L + V++
Sbjct: 349 ISLCATVMQ 357
>gi|30584245|gb|AAP36371.1| Homo sapiens replication factor C (activator 1) 4, 37kDa [synthetic
construct]
gi|54697188|gb|AAV38966.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|60653953|gb|AAX29669.1| replication factor C 4 [synthetic construct]
gi|60654181|gb|AAX29783.1| replication factor C 4 [synthetic construct]
gi|60830868|gb|AAX36948.1| replication factor C 4 [synthetic construct]
gi|61367088|gb|AAX42950.1| replication factor C 4 [synthetic construct]
Length = 364
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/328 (57%), Positives = 241/328 (73%), Gaps = 10/328 (3%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ S + + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I ++E+V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ I + + ++ GVIP I+ + + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG 300
Query: 292 YSATQLFDQFHDIVMLASSLSDKQKALF 319
++ATQL +Q HD+V+ ++LSDKQK++
Sbjct: 301 HAATQLVNQLHDVVV-ENNLSDKQKSII 327
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 88/129 (68%), Gaps = 4/129 (3%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVL 381
LV+ S GD+R+AIT LQS RL GG+ I + + ++ GVIP I+ + + SF L
Sbjct: 230 LVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKL 289
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
E ++DLI E ++ATQL +Q HD+V+ ++LSDKQK++I EKLAE + L DGA E++Q+
Sbjct: 290 EAVVKDLIDEGHAATQLVNQLHDVVVE-NNLSDKQKSIITEKLAEVDKCLADGADEHLQL 348
Query: 442 LDLGSIVIK 450
+ L + V++
Sbjct: 349 ISLCATVMQ 357
>gi|354492255|ref|XP_003508264.1| PREDICTED: replication factor C subunit 4 [Cricetulus griseus]
gi|344245879|gb|EGW01983.1| Replication factor C subunit 4 [Cricetulus griseus]
Length = 362
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/326 (57%), Positives = 240/326 (73%), Gaps = 7/326 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVST--SGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVSVL 57
M+AFL+ + + ++ T SG+T+ KPVPWVEKYRPK +D+V Q+EVV+VL
Sbjct: 1 MQAFLKGTSVSTKPQFTKDRAIPTGSSGETKKVKPVPWVEKYRPKCVDEVAFQEEVVAVL 60
Query: 58 KKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDK 116
KK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R+K
Sbjct: 61 KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREK 120
Query: 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
VK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICNY
Sbjct: 121 VKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY 180
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
VS II+PLTSRCSKFRFKPL++ RL I E+E+V + + LV+ S GD+R+AI
Sbjct: 181 VSRIIEPLTSRCSKFRFKPLSDKIQRERLLDIAEKENVKISHEVIAYLVKVSEGDLRKAI 240
Query: 237 TCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEAYS 293
T LQS RL GG+ ++ + + ++ GVIP I+ + + SF LE ++DLI E +
Sbjct: 241 TFLQSATRLTGGKEVMRDVITDIAGVIPATTIDGIFTACQSGSFDKLEAVVKDLIDEGQA 300
Query: 294 ATQLFDQFHDIVMLASSLSDKQKALF 319
A QL +Q HD+V+ LSDKQK++
Sbjct: 301 AVQLVNQLHDVVVENEDLSDKQKSII 326
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 85/129 (65%), Gaps = 3/129 (2%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVL 381
LV+ S GD+R+AIT LQS RL GG+ ++ + + ++ GVIP I+ + + SF L
Sbjct: 228 LVKVSEGDLRKAITFLQSATRLTGGKEVMRDVITDIAGVIPATTIDGIFTACQSGSFDKL 287
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
E ++DLI E +A QL +Q HD+V+ LSDKQK++I EKLAE + L DGA E++Q+
Sbjct: 288 EAVVKDLIDEGQAAVQLVNQLHDVVVENEDLSDKQKSIITEKLAEVDKCLADGADEHLQL 347
Query: 442 LDLGSIVIK 450
+ L + V++
Sbjct: 348 MSLCATVMQ 356
>gi|297672721|ref|XP_002814437.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pongo abelii]
gi|297672723|ref|XP_002814438.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pongo abelii]
gi|397470118|ref|XP_003806680.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pan paniscus]
gi|397470120|ref|XP_003806681.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pan paniscus]
gi|426343233|ref|XP_004038219.1| PREDICTED: replication factor C subunit 4 isoform 1 [Gorilla
gorilla gorilla]
gi|426343235|ref|XP_004038220.1| PREDICTED: replication factor C subunit 4 isoform 2 [Gorilla
gorilla gorilla]
gi|410253804|gb|JAA14869.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
Length = 363
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/328 (57%), Positives = 243/328 (74%), Gaps = 10/328 (3%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVS----TSGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ +SG+ + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKPPLTKDRGVAATAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I ++E+V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ I + + ++ GVIP I+ + + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG 300
Query: 292 YSATQLFDQFHDIVMLASSLSDKQKALF 319
++ATQL +Q HD+V+ ++LSDKQK++
Sbjct: 301 HAATQLVNQLHDVVV-ENNLSDKQKSII 327
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 88/129 (68%), Gaps = 4/129 (3%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVL 381
LV+ S GD+R+AIT LQS RL GG+ I + + ++ GVIP I+ + + SF L
Sbjct: 230 LVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKL 289
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
E ++DLI E ++ATQL +Q HD+V+ ++LSDKQK++I EKLAE + L DGA E++Q+
Sbjct: 290 EAVVKDLIDEGHAATQLVNQLHDVVVE-NNLSDKQKSIITEKLAEVDKCLADGADEHLQL 348
Query: 442 LDLGSIVIK 450
+ L + V++
Sbjct: 349 ISLCATVMQ 357
>gi|332818666|ref|XP_003310208.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pan
troglodytes]
gi|332818668|ref|XP_003310209.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pan
troglodytes]
gi|410223264|gb|JAA08851.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
gi|410291994|gb|JAA24597.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
gi|410332695|gb|JAA35294.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
Length = 363
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 188/328 (57%), Positives = 243/328 (74%), Gaps = 10/328 (3%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVS----TSGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ +SG+ + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKPPLTKDRGVAATAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I ++E+V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ I + + ++ GVIP I+ + + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG 300
Query: 292 YSATQLFDQFHDIVMLASSLSDKQKALF 319
++ATQL +Q HD+V+ ++LSDKQK++
Sbjct: 301 HAATQLVNQVHDVVV-ENNLSDKQKSII 327
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 88/129 (68%), Gaps = 4/129 (3%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVL 381
LV+ S GD+R+AIT LQS RL GG+ I + + ++ GVIP I+ + + SF L
Sbjct: 230 LVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKL 289
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
E ++DLI E ++ATQL +Q HD+V+ ++LSDKQK++I EKLAE + L DGA E++Q+
Sbjct: 290 EAVVKDLIDEGHAATQLVNQVHDVVVE-NNLSDKQKSIITEKLAEVDKCLADGADEHLQL 348
Query: 442 LDLGSIVIK 450
+ L + V++
Sbjct: 349 ISLCATVMQ 357
>gi|351709587|gb|EHB12506.1| Replication factor C subunit 4 [Heterocephalus glaber]
Length = 364
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 186/329 (56%), Positives = 242/329 (73%), Gaps = 11/329 (3%)
Query: 1 MEAFLRTGKLGKDAPSSSK-----TSVSTSGKTRN-KPVPWVEKYRPKTIDDVIEQQEVV 54
M+AFL+ G P S+K + +SG+ + KPVPWVEKYRPK +D+V Q+EVV
Sbjct: 1 MQAFLK-GTSISTKPLSTKDQGITATAGSSGENKKVKPVPWVEKYRPKCVDEVAFQEEVV 59
Query: 55 SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVI 113
+VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+
Sbjct: 60 AVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRSRVLELNASDERGIQVV 119
Query: 114 RDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLI 173
R+KVK FAQ SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLI
Sbjct: 120 REKVKNFAQLAVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLI 179
Query: 174 CNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMR 233
CNYV+ II+PLTSRCSKFRFKPL++ RL I E+E+V + + LV+ S GD+R
Sbjct: 180 CNYVTRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISNEGIAYLVKVSEGDLR 239
Query: 234 RAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILE 290
+AIT LQS RL GG+ ++ + + ++ GVIP I+ + + SF LE +++LI E
Sbjct: 240 KAITFLQSATRLTGGKEVMEKVITDIAGVIPAETIDGVFAACQSGSFDKLEAVVKNLINE 299
Query: 291 AYSATQLFDQFHDIVMLASSLSDKQKALF 319
++ATQL +Q HD ++ +LSDKQK++
Sbjct: 300 GHAATQLINQVHDAIVENDNLSDKQKSIM 328
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 88/129 (68%), Gaps = 3/129 (2%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVL 381
LV+ S GD+R+AIT LQS RL GG+ ++ + + ++ GVIP I+ + + SF L
Sbjct: 230 LVKVSEGDLRKAITFLQSATRLTGGKEVMEKVITDIAGVIPAETIDGVFAACQSGSFDKL 289
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
E +++LI E ++ATQL +Q HD ++ +LSDKQK+++ EKLAE + L DGA E++Q+
Sbjct: 290 EAVVKNLINEGHAATQLINQVHDAIVENDNLSDKQKSIMTEKLAEADKCLADGADEHLQL 349
Query: 442 LDLGSIVIK 450
+ L +IV++
Sbjct: 350 ISLCAIVMQ 358
>gi|61367093|gb|AAX42951.1| replication factor C 4 [synthetic construct]
Length = 364
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 186/328 (56%), Positives = 240/328 (73%), Gaps = 10/328 (3%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ S + + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKF FKPL++ RL I ++E+V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFSFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ I + + ++ GVIP I+ + + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG 300
Query: 292 YSATQLFDQFHDIVMLASSLSDKQKALF 319
++ATQL +Q HD+V+ ++LSDKQK++
Sbjct: 301 HAATQLVNQLHDVVV-ENNLSDKQKSII 327
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 111/192 (57%), Gaps = 10/192 (5%)
Query: 268 IEKLLKVDSFQVLEKYIEDLI------LEAYSATQLFDQFHDIVMLASSLSDKQKALFKA 321
+EK K F ++ Y+ +I +S L D+ +L + + K +
Sbjct: 167 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFSFKPLSDKIQQQRLLDIAKKENVKISDEG 226
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSF 378
+ LV+ S GD+R+AIT LQS RL GG+ I + + ++ GVIP I+ + + SF
Sbjct: 227 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSF 286
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
LE ++DLI E ++ATQL +Q HD+V+ ++LSDKQK++I EKLAE + L DGA E+
Sbjct: 287 DKLEAVVKDLIDEGHAATQLVNQLHDVVVE-NNLSDKQKSIITEKLAEVDKCLADGADEH 345
Query: 439 IQILDLGSIVIK 450
+Q++ L + V++
Sbjct: 346 LQLISLCATVMQ 357
>gi|332215081|ref|XP_003256668.1| PREDICTED: replication factor C subunit 4 isoform 1 [Nomascus
leucogenys]
Length = 363
Score = 367 bits (943), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 190/330 (57%), Positives = 244/330 (73%), Gaps = 14/330 (4%)
Query: 1 MEAFLRTGK------LGKDAPSSSKTSVSTSGKTRN-KPVPWVEKYRPKTIDDVIEQQEV 53
M+AFL+ L KD ++ + +SG+ R KPVPWVEKYRPK +D+V Q+EV
Sbjct: 1 MQAFLKGTSISTKPLLTKDRGVAA--TAGSSGENRKAKPVPWVEKYRPKCVDEVAFQEEV 58
Query: 54 VSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQV 112
V+VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV
Sbjct: 59 VAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQV 118
Query: 113 IRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172
+R+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCL
Sbjct: 119 VREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCL 178
Query: 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDM 232
ICNYVS II+PLTSRCSKFRFKPL++ RL I ++E+V + + LV+ S GD+
Sbjct: 179 ICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDL 238
Query: 233 RRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLIL 289
R+AIT LQS RL GG+ I + + ++ GVIP I+ + + SF LE ++DLI
Sbjct: 239 RKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLID 298
Query: 290 EAYSATQLFDQFHDIVMLASSLSDKQKALF 319
E ++ATQL +Q HD+V+ ++LSDKQK++
Sbjct: 299 EGHAATQLVNQLHDVVV-ENNLSDKQKSII 327
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 88/129 (68%), Gaps = 4/129 (3%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVL 381
LV+ S GD+R+AIT LQS RL GG+ I + + ++ GVIP I+ + + SF L
Sbjct: 230 LVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKL 289
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
E ++DLI E ++ATQL +Q HD+V+ ++LSDKQK++I EKLAE + L DGA E++Q+
Sbjct: 290 EAVVKDLIDEGHAATQLVNQLHDVVVE-NNLSDKQKSIITEKLAEVDKCLADGADEHLQL 348
Query: 442 LDLGSIVIK 450
+ L + V++
Sbjct: 349 ISLCATVMQ 357
>gi|388454302|ref|NP_001253606.1| replication factor C subunit 4 [Macaca mulatta]
gi|355560107|gb|EHH16835.1| hypothetical protein EGK_12194 [Macaca mulatta]
gi|380815324|gb|AFE79536.1| replication factor C subunit 4 [Macaca mulatta]
gi|383420509|gb|AFH33468.1| replication factor C subunit 4 [Macaca mulatta]
Length = 363
Score = 367 bits (941), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 188/328 (57%), Positives = 238/328 (72%), Gaps = 10/328 (3%)
Query: 1 MEAFLR-----TGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ T L + T+ S+ + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKSLLTKDRGVAATAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I E+E+V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISDEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ I + ++ GVIP I+ + + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEITERVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG 300
Query: 292 YSATQLFDQFHDIVMLASSLSDKQKALF 319
++ATQ Q HD+V+ ++LSDKQK++
Sbjct: 301 HAATQFVSQLHDVVV-ENNLSDKQKSII 327
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 85/129 (65%), Gaps = 4/129 (3%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVL 381
LV+ S GD+R+AIT LQS RL GG+ I + ++ GVIP I+ + + SF L
Sbjct: 230 LVKVSEGDLRKAITFLQSATRLTGGKEITERVITDIAGVIPAEKIDGVFAACQSGSFDKL 289
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
E ++DLI E ++ATQ Q HD+V+ ++LSDKQK++I EKLAE + L DGA E++Q+
Sbjct: 290 EAVVKDLIDEGHAATQFVSQLHDVVVE-NNLSDKQKSIITEKLAEVDKCLADGADEHLQL 348
Query: 442 LDLGSIVIK 450
+ L + V++
Sbjct: 349 ISLCATVMQ 357
>gi|213512735|ref|NP_001134241.1| replication factor C subunit 4 [Salmo salar]
gi|209731766|gb|ACI66752.1| Replication factor C subunit 4 [Salmo salar]
Length = 355
Score = 367 bits (941), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 179/321 (55%), Positives = 237/321 (73%), Gaps = 6/321 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+ P K TSG+ + K VPWVEKYRPK +++V Q+EVV+VLKK
Sbjct: 1 MQAFLKGTSTQGTRPLKEK-GTGTSGEKKQKSVPWVEKYRPKCMEEVAFQEEVVAVLKKT 59
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
+ GADLP+ LFYGPPGTGKTST++AA +L+G ++YR+R+LELNASD+RGIQV+R+KVK
Sbjct: 60 IEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVREKVKR 119
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ T +G DGKPCPPFKI+ILDEADSMT+AAQAALRRTMEKE+++TRFCLICNY+S
Sbjct: 120 FAQLTVAGHRTDGKPCPPFKIIILDEADSMTNAAQAALRRTMEKESRTTRFCLICNYISR 179
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+PLTSRCSKFRFKPLA RL IC++E++ + + LV+ S GD+R+AIT L
Sbjct: 180 IIEPLTSRCSKFRFKPLANQVQEERLLDICDKENLKYSKEGIAALVKVSEGDLRKAITFL 239
Query: 240 QSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
QS ARL I V+E+ GV+P I+ LLK+ +F+ LE + +++ E Y+ATQ
Sbjct: 240 QSAARLNTDNEITESAVIEIAGVVPPKMIDNLLKICYKGTFEKLEIAVRNMVDEGYAATQ 299
Query: 297 LFDQFHDIVMLASSLSDKQKA 317
+ +Q H+ + + L+DKQK+
Sbjct: 300 IINQLHEAI-IEEELNDKQKS 319
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 86/134 (64%), Gaps = 4/134 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+ + LV+ S GD+R+AIT LQS ARL I V+E+ GV+P I+ LLK+
Sbjct: 219 EGIAALVKVSEGDLRKAITFLQSAARLNTDNEITESAVIEIAGVVPPKMIDNLLKICYKG 278
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+F+ LE + +++ E Y+ATQ+ +Q H+ ++ L+DKQK+ I EK+A + L DGA
Sbjct: 279 TFEKLEIAVRNMVDEGYAATQIINQLHEAIIE-EELNDKQKSAITEKMAVVDKCLVDGAD 337
Query: 437 EYIQILDLGSIVIK 450
EY+Q+L L S++++
Sbjct: 338 EYLQMLSLCSVIMQ 351
>gi|348513512|ref|XP_003444286.1| PREDICTED: replication factor C subunit 4-like [Oreochromis
niloticus]
Length = 357
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 181/321 (56%), Positives = 235/321 (73%), Gaps = 5/321 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+ + P K V S + + K VPWVEKYRPK +D+V Q+EVV+VLKK
Sbjct: 1 MQAFLKGATVQAARPQKDKAVVGPSAEKKAKAVPWVEKYRPKCVDEVAFQEEVVAVLKKS 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
L GADLP+ LFYGPPGTGKTST++AA +L+G ++YR+R+LELNASD+RGIQV+RDKVK
Sbjct: 61 LEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVRDKVKN 120
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ T +G DGK CPPFKI+ILDEADSMT AQAALRRTMEKE+++TRFCLICNY+S
Sbjct: 121 FAQLTVAGTRPDGKSCPPFKIIILDEADSMTAPAQAALRRTMEKESRTTRFCLICNYISR 180
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+PLTSRCSKFRFKPLA RL ICE+E++ +++ LV S GD+R+AIT L
Sbjct: 181 IIEPLTSRCSKFRFKPLANQIQEERLLEICEKENLKYTKESIAALVRVSEGDLRKAITFL 240
Query: 240 QSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
QS ARL + I + V+E+ GV+P I+ LL++ +F+ LE + +++ E Y+ATQ
Sbjct: 241 QSAARLNVDKEITDCAVIEIAGVVPDKMIDNLLQICFRGTFEKLEVAVRNMVDEGYAATQ 300
Query: 297 LFDQFHDIVMLASSLSDKQKA 317
+ Q H+ V + LSDKQK+
Sbjct: 301 ILTQLHECV-IEQDLSDKQKS 320
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 95/157 (60%), Gaps = 4/157 (2%)
Query: 297 LFDQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 356
L +Q + +L + K +++ LV S GD+R+AIT LQS ARL + I +
Sbjct: 197 LANQIQEERLLEICEKENLKYTKESIAALVRVSEGDLRKAITFLQSAARLNVDKEITDCA 256
Query: 357 VLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLS 413
V+E+ GV+P+ I+ LL++ +F+ LE + +++ E Y+ATQ+ Q H+ V+ LS
Sbjct: 257 VIEIAGVVPDKMIDNLLQICFRGTFEKLEVAVRNMVDEGYAATQILTQLHECVIE-QDLS 315
Query: 414 DKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 450
DKQK+ I EK+A L DGA EY+Q+L L S++++
Sbjct: 316 DKQKSTITEKMAVVCKCLSDGADEYLQLLSLCSVIMQ 352
>gi|21703948|ref|NP_663455.1| replication factor C subunit 4 [Mus musculus]
gi|81916548|sp|Q99J62.1|RFC4_MOUSE RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 subunit 4
gi|13097123|gb|AAH03335.1| Replication factor C (activator 1) 4 [Mus musculus]
gi|74147363|dbj|BAE27563.1| unnamed protein product [Mus musculus]
gi|148665244|gb|EDK97660.1| replication factor C (activator 1) 4 [Mus musculus]
Length = 364
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 186/330 (56%), Positives = 240/330 (72%), Gaps = 13/330 (3%)
Query: 1 MEAFLR------TGKLGKDAPSSSKTSVSTSGKTRN-KPVPWVEKYRPKTIDDVIEQQEV 53
M+AFL+ +L KD + + +SG+T+ KPVPWVEKYRPK +D+V Q EV
Sbjct: 1 MQAFLKGTSVSAKAQLTKD--RGTPATAGSSGETKKVKPVPWVEKYRPKCVDEVAFQDEV 58
Query: 54 VSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQV 112
V+VL+K L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV
Sbjct: 59 VAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQV 118
Query: 113 IRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172
+R+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCL
Sbjct: 119 VREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCL 178
Query: 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDM 232
ICNYVS II+PLTSRCSKFRFKPL++ RL I E+E+V + + LV+ S GD+
Sbjct: 179 ICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDL 238
Query: 233 RRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLIL 289
R+AIT LQS RL GG+ + + + ++ GVIP I+ + SF LE +++LI
Sbjct: 239 RKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLID 298
Query: 290 EAYSATQLFDQFHDIVMLASSLSDKQKALF 319
E ++ATQL +Q HD ++ +LSDK K++
Sbjct: 299 EGHAATQLVNQLHDAIIENENLSDKHKSII 328
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 84/129 (65%), Gaps = 3/129 (2%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVL 381
LV+ S GD+R+AIT LQS RL GG+ + + + ++ GVIP I+ + SF L
Sbjct: 230 LVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGIFTACHSGSFDKL 289
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
E +++LI E ++ATQL +Q HD ++ +LSDK K++I EKLAE + L DGA E++Q+
Sbjct: 290 EAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKSIITEKLAEVDKCLADGADEHLQL 349
Query: 442 LDLGSIVIK 450
+ L + V++
Sbjct: 350 MSLCATVMQ 358
>gi|52317098|ref|NP_999902.2| replication factor C subunit 4 [Danio rerio]
gi|49619077|gb|AAT68123.1| replication factor C subunit RFC4 [Danio rerio]
Length = 358
Score = 364 bits (934), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 179/323 (55%), Positives = 237/323 (73%), Gaps = 5/323 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+ +S S+ G+ + + VPWVEKYRPK +D+V Q+EVV+VLKK
Sbjct: 1 MQAFLKGSSSQSVKAQKPSSSSSSGGEKKQRAVPWVEKYRPKCVDEVAFQEEVVAVLKKS 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
L GADLP+ LFYGPPGTGKTST++AA +L+G D+YR+R+LELNASD+RGIQV+R+KVK
Sbjct: 61 LEGADLPNLLFYGPPGTGKTSTILAAARELYGPDLYRQRVLELNASDERGIQVVREKVKR 120
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ T +G DGK CPPFKI+ILDEADSMT AAQAALRRTMEKE+++TRFCLICNYVS
Sbjct: 121 FAQLTVAGTRPDGKTCPPFKIIILDEADSMTSAAQAALRRTMEKESRTTRFCLICNYVSR 180
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+PLTSRCSKFRFKPLA + R+ IC +E++ + ++ LV S GD+R+AIT L
Sbjct: 181 IIEPLTSRCSKFRFKPLANDVQQERILEICRKENLKYTTEGVDALVRVSEGDLRKAITFL 240
Query: 240 QSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
QS ARL I + ++E+ GV+P I+ LL + +F+ LE ++D+I + Y+AT
Sbjct: 241 QSGARLNSEREITEQTIIEIAGVVPPKVIQSLLHICYKGTFEKLEVAVKDMIDQGYAATN 300
Query: 297 LFDQFHDIVMLASSLSDKQKALF 319
L +Q HD++ + LSDKQK++
Sbjct: 301 LLNQLHDVI-IEEQLSDKQKSVI 322
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 89/134 (66%), Gaps = 4/134 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+ ++ LV S GD+R+AIT LQS ARL I + ++E+ GV+P I+ LL +
Sbjct: 220 EGVDALVRVSEGDLRKAITFLQSGARLNSEREITEQTIIEIAGVVPPKVIQSLLHICYKG 279
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+F+ LE ++D+I + Y+AT L +Q HD+++ LSDKQK++I EK+AE + L DGA
Sbjct: 280 TFEKLEVAVKDMIDQGYAATNLLNQLHDVIIE-EQLSDKQKSVITEKMAEVDKCLADGAD 338
Query: 437 EYIQILDLGSIVIK 450
EY+Q+L L S++++
Sbjct: 339 EYLQLLSLCSVIMQ 352
>gi|74150977|dbj|BAE27622.1| unnamed protein product [Mus musculus]
Length = 370
Score = 364 bits (934), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 186/329 (56%), Positives = 240/329 (72%), Gaps = 13/329 (3%)
Query: 1 MEAFLR------TGKLGKDAPSSSKTSVSTSGKTRN-KPVPWVEKYRPKTIDDVIEQQEV 53
M+AFL+ +L KD + + +SG+T+ KPVPWVEKYRPK +D+V Q EV
Sbjct: 1 MQAFLKGTSVSAKAQLTKD--RGTPATAGSSGETKKVKPVPWVEKYRPKCVDEVAFQDEV 58
Query: 54 VSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQV 112
V+VL+K L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV
Sbjct: 59 VAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQV 118
Query: 113 IRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172
+R+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCL
Sbjct: 119 VREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCL 178
Query: 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDM 232
ICNYVS II+PLTSRCSKFRFKPL++ RL I E+E+V + + LV+ S GD+
Sbjct: 179 ICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDL 238
Query: 233 RRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLIL 289
R+AIT LQS RL GG+ + + + ++ GVIP I+ + SF LE +++LI
Sbjct: 239 RKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLID 298
Query: 290 EAYSATQLFDQFHDIVMLASSLSDKQKAL 318
E ++ATQL +Q HD ++ +LSDK K++
Sbjct: 299 EGHAATQLVNQLHDAIIENENLSDKHKSI 327
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 67/104 (64%), Gaps = 3/104 (2%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVL 381
LV+ S GD+R+AIT LQS RL GG+ + + + ++ GVIP I+ + SF L
Sbjct: 230 LVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGIFTACHSGSFDKL 289
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 425
E +++LI E ++ATQL +Q HD ++ +LSDK K++I EKLA
Sbjct: 290 EAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKSIITEKLA 333
>gi|332021958|gb|EGI62288.1| Replication factor C subunit 4 [Acromyrmex echinatior]
Length = 356
Score = 364 bits (934), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 171/323 (52%), Positives = 233/323 (72%), Gaps = 4/323 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M AFL+TGKLG A K S S + + PWVEKYRPK ++D++EQ EVV+V+++
Sbjct: 1 MHAFLKTGKLGAPAAEVKKPSTSQAKDNKKDLTPWVEKYRPKNVNDIVEQTEVVNVIRQA 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ D P+ LFYGPPGTGKTS + AA Q+FG MY++RILELNASDDRGIQV+R+K+K+F
Sbjct: 61 MEHGDFPNMLFYGPPGTGKTSIIHAAARQMFGSMYKDRILELNASDDRGIQVVREKIKSF 120
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
A + A+ DGK CPPFKI+ILDEADSMT AAQ ALRR MEKE+ STRFCL+CNY+S I
Sbjct: 121 ALRRANPNGPDGKKCPPFKIIILDEADSMTGAAQTALRRIMEKESHSTRFCLVCNYLSRI 180
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I+P+ SRC+KFRFKPL++ + RL+YIC +E++ D LE +VE SGGD+R+A+ CLQ
Sbjct: 181 IKPIASRCTKFRFKPLSDEKSIARLEYICNEENLKADKSVLEKIVEASGGDLRQAVMCLQ 240
Query: 241 SCARLKGGE-GIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQ 296
S RLKG + I +D L+V G+IP I L K ++ ++K +E+L+LE Y +
Sbjct: 241 SITRLKGKDYEITADDALDVIGLIPDEQINILWEACKKGNYINVQKSLENLLLEGYPGAK 300
Query: 297 LFDQFHDIVMLASSLSDKQKALF 319
+ +Q ++ ++ + L+DKQKA+
Sbjct: 301 VIEQLNERIIFSDELTDKQKAII 323
Score = 104 bits (259), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 92/142 (64%), Gaps = 4/142 (2%)
Query: 316 KALFKALETLVETSGGDMRRAITCLQSCARLKGGE-GIVNEDVLEVTGVIPNPWIEKLL- 373
KA LE +VE SGGD+R+A+ CLQS RLKG + I +D L+V G+IP+ I L
Sbjct: 215 KADKSVLEKIVEASGGDLRQAVMCLQSITRLKGKDYEITADDALDVIGLIPDEQINILWE 274
Query: 374 --KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 431
K ++ ++K +E+L+LE Y ++ +Q ++ ++ + L+DKQKA+I + L EC+ RL
Sbjct: 275 ACKKGNYINVQKSLENLLLEGYPGAKVIEQLNERIIFSDELTDKQKAIIGDVLGECDFRL 334
Query: 432 QDGASEYIQILDLGSIVIKANK 453
+G+ EYIQ+L++ S + A K
Sbjct: 335 TEGSDEYIQLLNVFSTTLMACK 356
>gi|157786766|ref|NP_001099339.1| replication factor C subunit 4 [Rattus norvegicus]
gi|149019930|gb|EDL78078.1| replication factor C (activator 1) 4 (predicted), isoform CRA_a
[Rattus norvegicus]
gi|195540022|gb|AAI68166.1| Rfc4 protein [Rattus norvegicus]
Length = 364
Score = 364 bits (934), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 180/293 (61%), Positives = 224/293 (76%), Gaps = 4/293 (1%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
KPVPWVEKYRPK +D+V Q+EVV+VLKK L GADLP+ LFYGPPGTGKTST++AA +L
Sbjct: 36 KPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAAREL 95
Query: 91 FG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
FG +++R R+LELNASD+RGIQV+R+KVK FAQ T SG DGKPCPPFKIVILDEADSM
Sbjct: 96 FGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSM 155
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AAQAALRRTMEKE+K+TRFCLICNYVS II+PLTSRCSKFRFKPL++ RL I
Sbjct: 156 TSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQKRLLDIA 215
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIE 269
E+E+V + + LV S GD+R+AIT LQS RL GG+ I + + ++ GVIP IE
Sbjct: 216 EKENVKIGDEEIAYLVRISEGDLRKAITFLQSATRLTGGKEISEDVITDIAGVIPAATIE 275
Query: 270 KLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALF 319
++ SF LE +++LI E ++ATQL +Q HD ++ +LSDKQK++
Sbjct: 276 GIVTACHSGSFDKLEAVLKNLIDEGHAATQLVNQLHDSIIEDENLSDKQKSII 328
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 85/129 (65%), Gaps = 3/129 (2%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVL 381
LV S GD+R+AIT LQS RL GG+ I + + ++ GVIP IE ++ SF L
Sbjct: 230 LVRISEGDLRKAITFLQSATRLTGGKEISEDVITDIAGVIPAATIEGIVTACHSGSFDKL 289
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
E +++LI E ++ATQL +Q HD ++ +LSDKQK++I EKLAE + L DGA E++Q+
Sbjct: 290 EAVLKNLIDEGHAATQLVNQLHDSIIEDENLSDKQKSIITEKLAEVDKCLADGADEHLQL 349
Query: 442 LDLGSIVIK 450
+ L + V++
Sbjct: 350 MSLCATVMQ 358
>gi|432853216|ref|XP_004067597.1| PREDICTED: replication factor C subunit 4-like [Oryzias latipes]
Length = 355
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 180/323 (55%), Positives = 236/323 (73%), Gaps = 7/323 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+ +GK P K S + K VPWVEKYRPK +D+V Q+EVV+VLKK
Sbjct: 1 MQAFLKGAGVGK--PLKDKGPAGPSADKKPKTVPWVEKYRPKCVDEVAFQEEVVAVLKKS 58
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
L GADLP+ LFYGPPGTGKTST++AA +L+G ++YR+R+LELNASD+RGIQV+R+KVKT
Sbjct: 59 LEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVREKVKT 118
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ T +G DGK CPPFKI+ILDEADSMT AQAALRRTMEKE+++TRFCLICNY+S
Sbjct: 119 FAQLTVAGTRPDGKLCPPFKIIILDEADSMTAPAQAALRRTMEKESRTTRFCLICNYISR 178
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+PLTSRCSKFRFKPLA RL ICE+E++ +++E LV+ S GD+R+AIT L
Sbjct: 179 IIEPLTSRCSKFRFKPLANRIQEERLLEICEKENLKYTRESIEALVQVSEGDLRKAITFL 238
Query: 240 QSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
Q ARL + I + ++E+ GV+P IE LL+ +F+ LE + +L+ + Y+ATQ
Sbjct: 239 QCAARLNMDKEITDRAIVEIAGVVPSKMIEGLLQTCFKGTFERLEVTVRNLVNDGYAATQ 298
Query: 297 LFDQFHDIVMLASSLSDKQKALF 319
+ Q H+ + + S L DK K++
Sbjct: 299 ILSQLHESI-IESDLKDKDKSII 320
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/134 (39%), Positives = 88/134 (65%), Gaps = 4/134 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+++E LV+ S GD+R+AIT LQ ARL + I + ++E+ GV+P+ IE LL+
Sbjct: 218 ESIEALVQVSEGDLRKAITFLQCAARLNMDKEITDRAIVEIAGVVPSKMIEGLLQTCFKG 277
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+F+ LE + +L+ + Y+ATQ+ Q H+ ++ S L DK K++I EK+A + L DGA
Sbjct: 278 TFERLEVTVRNLVNDGYAATQILSQLHESIIE-SDLKDKDKSIITEKMAVVSKCLSDGAD 336
Query: 437 EYIQILDLGSIVIK 450
EY+Q+L L S++++
Sbjct: 337 EYLQMLSLCSVIMQ 350
>gi|328794001|ref|XP_003251959.1| PREDICTED: replication factor C subunit 4-like, partial [Apis
mellifera]
Length = 303
Score = 362 bits (928), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 174/290 (60%), Positives = 230/290 (79%), Gaps = 4/290 (1%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPK ++DV+EQ EVV VL++CL G D P+ LFYGPPGTGKTST++AA QLFG
Sbjct: 6 PWVEKYRPKNVEDVVEQTEVVEVLRQCLKGGDFPNLLFYGPPGTGKTSTILAAARQLFGS 65
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+Y+ER+LELNASD+RGIQV+R+K+K+FAQ TA G DGK CPPFKI++LDEADSMT AA
Sbjct: 66 LYKERVLELNASDERGIQVVREKIKSFAQLTAGGMRDDGKSCPPFKIIVLDEADSMTGAA 125
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
QAALRRTMEKE+ STRFCLICNYVS II+PLTSRC+KFRFKPL EN ++ RL+YIC++E
Sbjct: 126 QAALRRTMEKESHSTRFCLICNYVSRIIEPLTSRCTKFRFKPLGENKIIERLEYICKEED 185
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE-GIVNEDVLEVTGVIPKPWIEKLL 272
+ + L +VE SGGD+RRAITCLQS +LKG + I +DVLE+ G++P W+++L+
Sbjct: 186 LKVEKPVLLKIVEVSGGDLRRAITCLQSITKLKGKDIEITVDDVLEIIGIVPDKWLDELI 245
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALF 319
K + E++++ +LEAY+ +Q+ +Q + ++ ++ L+DKQKAL
Sbjct: 246 DVCKTKDYSKAEEFVDQFMLEAYATSQVIEQLSERIIYSNELTDKQKALI 295
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 75/105 (71%), Gaps = 4/105 (3%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGE-GIVNEDVLEVTGVIPNPWIEKLL---KVDSFQV 380
+VE SGGD+RRAITCLQS +LKG + I +DVLE+ G++P+ W+++L+ K +
Sbjct: 196 IVEVSGGDLRRAITCLQSITKLKGKDIEITVDDVLEIIGIVPDKWLDELIDVCKTKDYSK 255
Query: 381 LEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 425
E++++ +LEAY+ +Q+ +Q + ++ ++ L+DKQKALI +KL
Sbjct: 256 AEEFVDQFMLEAYATSQVIEQLSERIIYSNELTDKQKALIADKLG 300
>gi|47214930|emb|CAG01152.1| unnamed protein product [Tetraodon nigroviridis]
Length = 357
Score = 360 bits (924), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 178/321 (55%), Positives = 230/321 (71%), Gaps = 5/321 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+ + K +S + + K VPWVEKYRPK +D+V Q+EVV+VLKK
Sbjct: 1 MQAFLKGATVQTTKLQKEKAGAGSSSEKKAKAVPWVEKYRPKCVDEVAFQEEVVAVLKKS 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKT 119
L GADLP+ LFYGPPGTGKTST++AA +L+G +YR+R+LELNASD+RGIQVIR+KVKT
Sbjct: 61 LEGADLPNLLFYGPPGTGKTSTILAAARELYGPVLYRQRVLELNASDERGIQVIREKVKT 120
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ T +G DGKPCPPFKI+ILDEADSMT AQAALRRTMEKE+++TRFCLICNY+S
Sbjct: 121 FAQLTVAGTRPDGKPCPPFKIIILDEADSMTPPAQAALRRTMEKESRTTRFCLICNYISR 180
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+PLTSRCSKFRFKPL RL ICE+E++ +++ LV S GD+R+AIT L
Sbjct: 181 IIEPLTSRCSKFRFKPLDNQVQEERLLAICEKENLKYSGESVSALVRVSEGDLRKAITFL 240
Query: 240 QSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
QS ARL + I + E+ GV+P I+ LL + +F+ LE + +L+ E Y+ATQ
Sbjct: 241 QSAARLSVDKEISERTITEIAGVVPHKMIDSLLHICFRGTFEKLEVEVRNLVDEGYAATQ 300
Query: 297 LFDQFHDIVMLASSLSDKQKA 317
+ Q H+ + + L DKQK+
Sbjct: 301 ILSQLHESI-IEKDLGDKQKS 320
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 105/192 (54%), Gaps = 10/192 (5%)
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLF------DQFHDIVMLASSLSDKQKALFKA 321
+EK + F ++ YI +I S F +Q + +LA + K ++
Sbjct: 162 MEKESRTTRFCLICNYISRIIEPLTSRCSKFRFKPLDNQVQEERLLAICEKENLKYSGES 221
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSF 378
+ LV S GD+R+AIT LQS ARL + I + E+ GV+P+ I+ LL + +F
Sbjct: 222 VSALVRVSEGDLRKAITFLQSAARLSVDKEISERTITEIAGVVPHKMIDSLLHICFRGTF 281
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
+ LE + +L+ E Y+ATQ+ Q H+ ++ L DKQK+ I EK+A + L DGA EY
Sbjct: 282 EKLEVEVRNLVDEGYAATQILSQLHESIIE-KDLGDKQKSAITEKMAVVSKCLSDGADEY 340
Query: 439 IQILDLGSIVIK 450
+Q+L L S++++
Sbjct: 341 LQMLSLCSVIMQ 352
>gi|312377422|gb|EFR24254.1| hypothetical protein AND_11259 [Anopheles darlingi]
Length = 328
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 179/281 (63%), Positives = 226/281 (80%), Gaps = 4/281 (1%)
Query: 43 TIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILEL 102
+++DV+EQ EVV+VL++ LS ADLP+ L YGPPGTGKTST++AA QLFGDM++ERILEL
Sbjct: 33 SVEDVVEQAEVVAVLRESLSTADLPNLLLYGPPGTGKTSTILAAARQLFGDMFKERILEL 92
Query: 103 NASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTME 162
NASDDRGI VIR+KVKTFAQ TASG DGKPCPPFKIVILDEAD+MTHAAQAALRRTME
Sbjct: 93 NASDDRGIAVIRNKVKTFAQLTASGTRADGKPCPPFKIVILDEADAMTHAAQAALRRTME 152
Query: 163 KETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALE 222
KETK+TRFCL+CNYVS II+P+TSRC+KFRFKPL E ++ RL+YIC+QE V D +
Sbjct: 153 KETKTTRFCLVCNYVSRIIEPITSRCTKFRFKPLGEERIIERLRYICDQEQVTVDEAVYK 212
Query: 223 TLVETSGGDMRRAITCLQSCARLKG-GEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQ 278
+V+ SGGDMRRAIT LQSC RLKG G I +D+LE++GV+P+ ++E+ L V +
Sbjct: 213 DIVDISGGDMRRAITTLQSCHRLKGAGARIERQDILEMSGVVPERYLEEFLAVCKSSDYS 272
Query: 279 VLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALF 319
LE+Y+++L +AYS QLF+Q + ++ L++KQKAL
Sbjct: 273 KLEEYVQNLSYDAYSVGQLFEQLTEYIVYNDGLTEKQKALL 313
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 73/105 (69%), Gaps = 4/105 (3%)
Query: 325 LVETSGGDMRRAITCLQSCARLKG-GEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQV 380
+V+ SGGDMRRAIT LQSC RLKG G I +D+LE++GV+P ++E+ L V +
Sbjct: 214 IVDISGGDMRRAITTLQSCHRLKGAGARIERQDILEMSGVVPERYLEEFLAVCKSSDYSK 273
Query: 381 LEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 425
LE+Y+++L +AYS QLF+Q + ++ L++KQKAL+ EKL
Sbjct: 274 LEEYVQNLSYDAYSVGQLFEQLTEYIVYNDGLTEKQKALLCEKLG 318
>gi|322797318|gb|EFZ19436.1| hypothetical protein SINV_09794 [Solenopsis invicta]
Length = 353
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 170/316 (53%), Positives = 229/316 (72%), Gaps = 7/316 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPV-PWVEKYRPKTIDDVIEQQEVVSVLKK 59
M AFL+TGKLG AP+ K ++ K K + PWVEKYRP+ +DD++EQ EVV+V+++
Sbjct: 34 MHAFLKTGKLG--APAEVKKPSTSRVKDDKKDLTPWVEKYRPRNVDDIVEQTEVVNVIRQ 91
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119
+ D P+ LFYGPPGTGKTS + AA Q+FG MY++RILELNASDDRGIQV+RDK+K+
Sbjct: 92 AMEHGDFPNMLFYGPPGTGKTSIIHAAARQMFGSMYKDRILELNASDDRGIQVVRDKIKS 151
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FA + A+ DGK CPPFKIVILDEADSMT AAQ ALRR MEKE+ STRFCL+CNY+S
Sbjct: 152 FALRRANPNGPDGKKCPPFKIVILDEADSMTGAAQTALRRIMEKESHSTRFCLVCNYLSR 211
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+P+ SRC+KFRFKPL + + RL+YIC +E++ D LE +V+ SGGD+R+A+ CL
Sbjct: 212 IIKPIASRCTKFRFKPLTDEKSIARLEYICNEENLKADRSVLEKIVQASGGDLRQAVMCL 271
Query: 240 QSCARLKGGE-GIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEAYSAT 295
QS RLKG + I D L+V G++P I KL K ++ ++K +E+L+LE Y +
Sbjct: 272 QSITRLKGKDYEITVNDALDVIGLVPHDQINKLWEACKKGNYNNVQKLLENLLLEGYPGS 331
Query: 296 QLFDQFHDIVMLASSL 311
Q+ +Q ++ ++ SL
Sbjct: 332 QVIEQLNERIIFPMSL 347
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 63/101 (62%), Gaps = 4/101 (3%)
Query: 316 KALFKALETLVETSGGDMRRAITCLQSCARLKGGE-GIVNEDVLEVTGVIPNPWIEKLL- 373
KA LE +V+ SGGD+R+A+ CLQS RLKG + I D L+V G++P+ I KL
Sbjct: 247 KADRSVLEKIVQASGGDLRQAVMCLQSITRLKGKDYEITVNDALDVIGLVPHDQINKLWE 306
Query: 374 --KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL 412
K ++ ++K +E+L+LE Y +Q+ +Q ++ ++ SL
Sbjct: 307 ACKKGNYNNVQKLLENLLLEGYPGSQVIEQLNERIIFPMSL 347
>gi|410930528|ref|XP_003978650.1| PREDICTED: replication factor C subunit 4-like [Takifugu rubripes]
Length = 357
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 177/321 (55%), Positives = 228/321 (71%), Gaps = 5/321 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+ + K +S + K VPWVEKYRPK +D+V Q+EVV+VLKK
Sbjct: 1 MQAFLKGATVQAPKAQKEKALAGSSTEKTVKAVPWVEKYRPKCVDEVAFQEEVVAVLKKS 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKT 119
L GADLP+ LFYGPPGTGKTST++AA +L+G +YR+R+LELNASD+RGIQVIR+KVKT
Sbjct: 61 LEGADLPNLLFYGPPGTGKTSTILAAARELYGPVLYRQRVLELNASDERGIQVIREKVKT 120
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ T +G DGK CPPFKI+ILDEADSMT AQAALRRTMEKE+++TRFCLICNY+S
Sbjct: 121 FAQLTVAGTRPDGKLCPPFKIIILDEADSMTPPAQAALRRTMEKESRTTRFCLICNYISR 180
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+PLTSRCSKFRFKPL + TRL ICE+E++ + + LV S GD+R+AIT L
Sbjct: 181 IIEPLTSRCSKFRFKPLDNHIQETRLLDICEKENLKYSKEGISALVRVSEGDLRKAITFL 240
Query: 240 QSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
QS ARL + I + E+ GV+P I+ LL + +F+ LE + +L+ E Y+ATQ
Sbjct: 241 QSAARLSIAKEITEHTITEIAGVVPNKMIDNLLHICFRGTFEKLEVAVRNLVDEGYAATQ 300
Query: 297 LFDQFHDIVMLASSLSDKQKA 317
+ Q H+ + + DKQK+
Sbjct: 301 ILSQLHESI-IEKDFGDKQKS 320
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 82/134 (61%), Gaps = 4/134 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+ + LV S GD+R+AIT LQS ARL + I + E+ GV+PN I+ LL +
Sbjct: 220 EGISALVRVSEGDLRKAITFLQSAARLSIAKEITEHTITEIAGVVPNKMIDNLLHICFRG 279
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+F+ LE + +L+ E Y+ATQ+ Q H+ ++ DKQK+ I EK+A + + DGA
Sbjct: 280 TFEKLEVAVRNLVDEGYAATQILSQLHESIIE-KDFGDKQKSAIAEKMAVVSKCMLDGAD 338
Query: 437 EYIQILDLGSIVIK 450
E++Q+L L S++++
Sbjct: 339 EFLQMLSLCSVIMQ 352
>gi|307205986|gb|EFN84112.1| Replication factor C subunit 4 [Harpegnathos saltator]
Length = 360
Score = 354 bits (908), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 176/323 (54%), Positives = 233/323 (72%), Gaps = 5/323 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M AFL+TGKLG K S S S + + PWVEKYRPK++DD++EQ EVV+V+++
Sbjct: 1 MHAFLKTGKLGASV-EVKKPSTSRSKEDKKDLTPWVEKYRPKSVDDIVEQTEVVNVIRQA 59
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ D P+ LFYGPPGTGKTS + AA Q+FG +YR+RILELNASDDRGIQV+RDK+K+F
Sbjct: 60 MEHGDFPNMLFYGPPGTGKTSIIHAAARQMFGSIYRDRILELNASDDRGIQVVRDKIKSF 119
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
A + A+ DGK CPPFKI+ILDEADSMT AAQ ALRR MEKE STRFCL+CNY+S I
Sbjct: 120 ALRRANPTRPDGKKCPPFKIIILDEADSMTGAAQTALRRIMEKEAHSTRFCLVCNYLSRI 179
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I+P+TSRC+KFRFKPL++ + RL+YIC +E++M + LE +V SGGD+R+A+ CLQ
Sbjct: 180 IKPITSRCTKFRFKPLSDEKSIARLEYICNEENLMANRNVLEKIVAASGGDLRQAVMCLQ 239
Query: 241 SCARLKGGE-GIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQ 296
S RLKG E I +D L+V G++P I L K S+ +E +E+L+LE Y A+Q
Sbjct: 240 SITRLKGIEYEITVDDALDVIGLVPDEKINTLWETCKKGSYNDIETLLENLLLEGYPASQ 299
Query: 297 LFDQFHDIVMLASSLSDKQKALF 319
+ DQ ++ ++ L+DKQK +
Sbjct: 300 VIDQLNERIIFCEDLNDKQKTMI 322
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/114 (41%), Positives = 71/114 (62%), Gaps = 4/114 (3%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGE-GIVNEDVLEVTGVIPNPWIEKLL---KVDS 377
LE +V SGGD+R+A+ CLQS RLKG E I +D L+V G++P+ I L K S
Sbjct: 220 LEKIVAASGGDLRQAVMCLQSITRLKGIEYEITVDDALDVIGLVPDEKINTLWETCKKGS 279
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 431
+ +E +E+L+LE Y A+Q+ DQ ++ ++ L+DKQK +I + L + A L
Sbjct: 280 YNDIETLLENLLLEGYPASQVIDQLNERIIFCEDLNDKQKTMIGDMLGDQQAFL 333
>gi|114052583|ref|NP_001039359.1| replication factor C subunit 4 [Bos taurus]
gi|88954368|gb|AAI14042.1| Replication factor C (activator 1) 4, 37kDa [Bos taurus]
gi|296491286|tpg|DAA33349.1| TPA: replication factor C 4 [Bos taurus]
Length = 337
Score = 354 bits (908), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 177/325 (54%), Positives = 227/325 (69%), Gaps = 30/325 (9%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ + ++ + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGASISTKPPPTKDRGVTATARSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I ++E V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVQVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKVDSFQVLEKYIEDLILEAYSA 294
AIT LQS RL GG+ + + + ++ G DLI E ++A
Sbjct: 241 AITFLQSATRLTGGKEVTEKVITDIAG------------------------DLINEGHAA 276
Query: 295 TQLFDQFHDIVMLASSLSDKQKALF 319
TQL +Q HD+V+ +LSDKQK++
Sbjct: 277 TQLVNQLHDVVVENDNLSDKQKSII 301
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 74/126 (58%), Gaps = 24/126 (19%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKY 384
LV+ S GD+R+AIT LQS RL GG+ + + + ++ G
Sbjct: 230 LVQVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAG---------------------- 267
Query: 385 IEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 444
DLI E ++ATQL +Q HD+V+ +LSDKQK++I EKLAE + L DGA E++Q++ L
Sbjct: 268 --DLINEGHAATQLVNQLHDVVVENDNLSDKQKSIITEKLAEVDKCLADGADEHLQLISL 325
Query: 445 GSIVIK 450
+ V++
Sbjct: 326 CATVMQ 331
>gi|426217728|ref|XP_004003104.1| PREDICTED: replication factor C subunit 4 isoform 2 [Ovis aries]
Length = 337
Score = 354 bits (908), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 177/325 (54%), Positives = 227/325 (69%), Gaps = 30/325 (9%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ + ++ + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGASISTKPPPTKDRGVTATARSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I ++E V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKVDSFQVLEKYIEDLILEAYSA 294
AIT LQS RL GG+ + + + ++ G DLI E ++A
Sbjct: 241 AITFLQSATRLTGGKEVTEKVITDIAG------------------------DLINEGHAA 276
Query: 295 TQLFDQFHDIVMLASSLSDKQKALF 319
TQL +Q HD+V+ +LSDKQK++
Sbjct: 277 TQLVNQLHDVVVENDNLSDKQKSII 301
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 74/126 (58%), Gaps = 24/126 (19%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKY 384
LV+ S GD+R+AIT LQS RL GG+ + + + ++ G
Sbjct: 230 LVKVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAG---------------------- 267
Query: 385 IEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 444
DLI E ++ATQL +Q HD+V+ +LSDKQK++I EKLAE + L DGA E++Q++ L
Sbjct: 268 --DLINEGHAATQLVNQLHDVVVENDNLSDKQKSIITEKLAEVDKCLADGADEHLQLISL 325
Query: 445 GSIVIK 450
+ V++
Sbjct: 326 CATVMQ 331
>gi|432099509|gb|ELK28652.1| Replication factor C subunit 4 [Myotis davidii]
Length = 427
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 186/361 (51%), Positives = 242/361 (67%), Gaps = 42/361 (11%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVS----TSGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ +SG+ + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 31 MQAFLKGTSISTKPPLTKDRGVAATAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 90
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 91 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGHELFRLRVLELNASDERGIQVVR 150
Query: 115 DKVKTFAQQTASGFNQD---------------------------------GKPCPPFKIV 141
+KVK FAQ T SG + GKPCPPFKIV
Sbjct: 151 EKVKNFAQLTVSGSRSECIIQEPQLPSHCNLAAPTLSFCPLVIIVRQSYGGKPCPPFKIV 210
Query: 142 ILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTM 201
ILDEADSMT AAQAALRRTMEKE+K+TRFCLICNYVS II+PLTSRCSKFRFKPL++
Sbjct: 211 ILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQ 270
Query: 202 LTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
RL I ++E V + L LV+ S GD+R+AIT LQS RL GG+ + ++ + ++ G
Sbjct: 271 QQRLLDIADKEHVKISNEGLSCLVQVSEGDLRKAITFLQSATRLTGGKEVTDKVITDIAG 330
Query: 262 VIPKPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKAL 318
VIP ++ + + SF LE ++DLI E ++ATQL +Q HD+V+ +LSDKQK++
Sbjct: 331 VIPVETVDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENDALSDKQKSI 390
Query: 319 F 319
Sbjct: 391 I 391
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 110/192 (57%), Gaps = 9/192 (4%)
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLF------DQFHDIVMLASSLSDKQKALFKA 321
+EK K F ++ Y+ +I S F D+ +L + + K +
Sbjct: 230 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEG 289
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSF 378
L LV+ S GD+R+AIT LQS RL GG+ + ++ + ++ GVIP ++ + + SF
Sbjct: 290 LSCLVQVSEGDLRKAITFLQSATRLTGGKEVTDKVITDIAGVIPVETVDGVFAACQSGSF 349
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
LE ++DLI E ++ATQL +Q HD+V+ +LSDKQK++I EKLA+ + L DGA E+
Sbjct: 350 DKLEAVVKDLIDEGHAATQLVNQLHDVVVENDALSDKQKSIITEKLADVDKCLADGADEH 409
Query: 439 IQILDLGSIVIK 450
+Q++ L + V++
Sbjct: 410 LQLISLCATVMQ 421
>gi|307178287|gb|EFN67059.1| Replication factor C subunit 4 [Camponotus floridanus]
Length = 357
Score = 350 bits (899), Expect = 7e-94, Method: Compositional matrix adjust.
Identities = 175/324 (54%), Positives = 234/324 (72%), Gaps = 7/324 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPV-PWVEKYRPKTIDDVIEQQEVVSVLKK 59
M AFL+TGKLG AP+ K ++ K K + PWVEKYRPK +DD++EQ EVV+V+++
Sbjct: 1 MHAFLKTGKLG--APTDVKKPSTSRAKDDKKDLTPWVEKYRPKNVDDIVEQTEVVNVIRQ 58
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119
+ D P+ LFYGPPGTGKTS + AA Q+FG MY++RILELNASDDRGIQV+R+K+K+
Sbjct: 59 AMKHGDFPNMLFYGPPGTGKTSIIHAAARQMFGSMYKDRILELNASDDRGIQVVREKIKS 118
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FA + A+ DGK CPPFKI+ILDEADSMT AAQ ALRR MEKE STRFCL+CNY+S
Sbjct: 119 FALRKANPIGPDGKKCPPFKIIILDEADSMTGAAQTALRRIMEKEAHSTRFCLVCNYLSR 178
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+P+ SRC+KFRFKPL++ ++RL+YIC +E++ D LE +VE SGGD+R+A+ CL
Sbjct: 179 IIKPIASRCTKFRFKPLSDEKSISRLEYICNEENLKADRSVLEKIVEASGGDLRQAVMCL 238
Query: 240 QSCARLKGGE-GIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEAYSAT 295
QS RLKG I +D L+V G+IP I L K ++ +E +E+L+LE Y +
Sbjct: 239 QSITRLKGKNYEITVDDALDVIGLIPDEKINALWEACKKGNYSNVETLLENLLLEGYPGS 298
Query: 296 QLFDQFHDIVMLASSLSDKQKALF 319
Q+ +Q ++ V+ + LSDKQK +
Sbjct: 299 QVIEQLNEKVIFSDELSDKQKVII 322
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 92/144 (63%), Gaps = 4/144 (2%)
Query: 316 KALFKALETLVETSGGDMRRAITCLQSCARLKGGE-GIVNEDVLEVTGVIPNPWIEKLL- 373
KA LE +VE SGGD+R+A+ CLQS RLKG I +D L+V G+IP+ I L
Sbjct: 214 KADRSVLEKIVEASGGDLRQAVMCLQSITRLKGKNYEITVDDALDVIGLIPDEKINALWE 273
Query: 374 --KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 431
K ++ +E +E+L+LE Y +Q+ +Q ++ V+ + LSDKQK +I + L EC+ +L
Sbjct: 274 ACKKGNYSNVETLLENLLLEGYPGSQVIEQLNEKVIFSDELSDKQKVIIGDMLGECDYKL 333
Query: 432 QDGASEYIQILDLGSIVIKANKTA 455
+G+ EY+Q+L + S ++ A K++
Sbjct: 334 TEGSDEYLQLLSIFSTILIAWKSS 357
>gi|198429463|ref|XP_002129985.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 356
Score = 347 bits (889), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 172/322 (53%), Positives = 229/322 (71%), Gaps = 5/322 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+ G S+SK + + PWVEKYRPK +DDV Q EVV+VL+K
Sbjct: 1 MQAFLKGGASSSKGASTSKAQLQKQEEALASK-PWVEKYRPKCVDDVAHQDEVVAVLRKS 59
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
L+GADLP+ LFYGPPGTGKTST++A +LFG + +ER+LELN+SD+RGI VIR+KVK
Sbjct: 60 LTGADLPNLLFYGPPGTGKTSTILALSRELFGFQLMKERVLELNSSDERGINVIREKVKN 119
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ TA+ +DGK CPP+KI+ILDEADSMT AAQ ALRRTMEK +K+TRFCLICNYV+
Sbjct: 120 FAQLTANSLREDGKKCPPYKIIILDEADSMTKAAQEALRRTMEKSSKTTRFCLICNYVTR 179
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II P+ SRCS+FRFK L+ RL +CE+E V A+ LV+ S GD+R+A+T L
Sbjct: 180 IIPPIISRCSQFRFKSLSTEDQKKRLWMVCEKEGVKISQDAMSCLVKCSEGDLRKAMTYL 239
Query: 240 QSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK---VDSFQVLEKYIEDLILEAYSATQ 296
Q+ RLKG EGI +DVLE+TGV+P I+ L++ +S +++ ++ +I E +SA +
Sbjct: 240 QTAHRLKGAEGIDEKDVLEITGVVPDDIIKSLIRSCASNSHDKVQESVDYIISEGHSAAK 299
Query: 297 LFDQFHDIVMLASSLSDKQKAL 318
+ Q HD V+ SSL+D QK++
Sbjct: 300 IISQLHDEVLTLSSLNDLQKSV 321
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 91/131 (69%), Gaps = 3/131 (2%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDS 377
A+ LV+ S GD+R+A+T LQ+ RLKG EGI +DVLE+TGV+P+ I+ L++ +S
Sbjct: 220 AMSCLVKCSEGDLRKAMTYLQTAHRLKGAEGIDEKDVLEITGVVPDDIIKSLIRSCASNS 279
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
+++ ++ +I E +SA ++ Q HD V++ SSL+D QK++++EK+A + L DGA E
Sbjct: 280 HDKVQESVDYIISEGHSAAKIISQLHDEVLTLSSLNDLQKSVVMEKIAIVDKCLSDGADE 339
Query: 438 YIQILDLGSIV 448
Y+Q++ L + +
Sbjct: 340 YLQLMALATTL 350
>gi|443723218|gb|ELU11749.1| hypothetical protein CAPTEDRAFT_223108 [Capitella teleta]
Length = 343
Score = 347 bits (889), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 177/326 (54%), Positives = 228/326 (69%), Gaps = 26/326 (7%)
Query: 1 MEAFLRTGKLG----KDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSV 56
M+AFL+ GK+ K PS SKT S + + PWVEKYRPK +D+V Q+EVV+V
Sbjct: 1 MDAFLKGGKINAPEKKSQPSDSKTKKSKALE------PWVEKYRPKNVDEVAYQEEVVAV 54
Query: 57 LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK 116
L+K + G DLP+ L YGPPGTGKTST++AA LFGDMYR RILELN+SD+RGI V+RDK
Sbjct: 55 LRKAIEGLDLPNMLLYGPPGTGKTSTILAAAKGLFGDMYRSRILELNSSDERGISVVRDK 114
Query: 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
VKTF+Q +A G DGKPCPPFKIVILDEADSMT+AAQ+ALRRTMEKE+K+TRFCLICNY
Sbjct: 115 VKTFSQLSAGGKRPDGKPCPPFKIVILDEADSMTNAAQSALRRTMEKESKTTRFCLICNY 174
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
VS II+P+ + + RL+ IC +E V C +ALE L+ TS GDMR+AI
Sbjct: 175 VSRIIEPIA-------------DILQRRLKEICAKEDVSCSDEALEALMYTSEGDMRKAI 221
Query: 237 TCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYS 293
T LQS +R K GE I D+ E++GVIP I+ ++ + S++ LE I+D+I E ++
Sbjct: 222 TTLQSASRFKAGEEITKNDIYEISGVIPNDIIDGIIVICHSGSYEQLESTIKDVIAEGHA 281
Query: 294 ATQLFDQFHDIVMLASSLSDKQKALF 319
ATQ+ Q H ++ LSD QK++
Sbjct: 282 ATQVILQLHRSLIDNDRLSDAQKSVI 307
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 91/133 (68%), Gaps = 3/133 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+ALE L+ TS GDMR+AIT LQS +R K GE I D+ E++GVIPN I+ ++ +
Sbjct: 204 EALEALMYTSEGDMRKAITTLQSASRFKAGEEITKNDIYEISGVIPNDIIDGIIVICHSG 263
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
S++ LE I+D+I E ++ATQ+ Q H ++ LSD QK++I EKLA + RL DGA
Sbjct: 264 SYEQLESTIKDVIAEGHAATQVILQLHRSLIDNDRLSDAQKSVIFEKLAIVDKRLMDGAD 323
Query: 437 EYIQILDLGSIVI 449
E++QI+DL S+++
Sbjct: 324 EFLQIMDLCSLIM 336
>gi|195345297|ref|XP_002039206.1| GM22851 [Drosophila sechellia]
gi|194134432|gb|EDW55948.1| GM22851 [Drosophila sechellia]
Length = 326
Score = 347 bits (889), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 169/321 (52%), Positives = 222/321 (69%), Gaps = 34/321 (10%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+TGK + S R P PWVEKYRP+ +DDV+EQ EVV+VL+KC
Sbjct: 1 MQAFLKTGK---STAGTGDKSQGAPAARRKLPAPWVEKYRPRNVDDVVEQSEVVAVLRKC 57
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ G DLP+ L YGPPGTGKTST++AA Q+FGDM+++RILELNASD+RGI V+R K+K F
Sbjct: 58 VEGGDLPNMLLYGPPGTGKTSTILAASRQIFGDMFKDRILELNASDERGINVVRTKIKNF 117
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
+Q +AS DGKPCPPFKI+ILDEADSMTHAAQ+ALRRTMEKE++STRFCLICNYVS I
Sbjct: 118 SQISASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRI 177
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I P+TSRCSKFRFK L E+ ++ RL+YICE E
Sbjct: 178 IVPITSRCSKFRFKALGEDKVIDRLKYICEMEG--------------------------- 210
Query: 241 SCARLKGGEGIVN-EDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
SC RLKG E ++N D+ E++GVIP+ ++E L++ ++Q LE+++ ++ AYS Q
Sbjct: 211 SCYRLKGPEHVINTADLFEMSGVIPEYYLEDYLEICRSGNYQRLEQFVREIGFSAYSVGQ 270
Query: 297 LFDQFHDIVMLASSLSDKQKA 317
+ +QF + ++ L+D QKA
Sbjct: 271 MMEQFVEFIVDHPGLNDPQKA 291
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 77/116 (66%), Gaps = 4/116 (3%)
Query: 342 SCARLKGGEGIVN-EDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 397
SC RLKG E ++N D+ E++GVIP ++E L++ ++Q LE+++ ++ AYS Q
Sbjct: 211 SCYRLKGPEHVINTADLFEMSGVIPEYYLEDYLEICRSGNYQRLEQFVREIGFSAYSVGQ 270
Query: 398 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANK 453
+ +QF + ++ L+D QKA I +KL EC RLQDG SEY+QI+DLG +I A K
Sbjct: 271 MMEQFVEFIVDHPGLNDPQKATICDKLGECCFRLQDGGSEYLQIMDLGCCIILALK 326
>gi|403270485|ref|XP_003927208.1| PREDICTED: uncharacterized protein LOC101046302 [Saimiri
boliviensis boliviensis]
Length = 766
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 172/284 (60%), Positives = 217/284 (76%), Gaps = 5/284 (1%)
Query: 40 RPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRER 98
RPK +D+V Q+EVV+VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R
Sbjct: 448 RPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLR 507
Query: 99 ILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALR 158
+LELNASD+RGIQV+R+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALR
Sbjct: 508 VLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALR 567
Query: 159 RTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDF 218
RTMEKE+K+TRFCLICNYVS II+PLTSRCSKFRFKPL++ RL I E+E+V
Sbjct: 568 RTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISD 627
Query: 219 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVD 275
+ + LV+ S GD+R+AIT LQS RL GG+ I + + ++ GVIP I + +
Sbjct: 628 EGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKINGVFAACQSG 687
Query: 276 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALF 319
SF LE ++DLI E ++ATQL +Q HD+V + ++LSDKQK++
Sbjct: 688 SFDKLEAVVKDLIDEGHAATQLVNQLHDVV-VENNLSDKQKSII 730
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 109/192 (56%), Gaps = 10/192 (5%)
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLF------DQFHDIVMLASSLSDKQKALFKA 321
+EK K F ++ Y+ +I S F D+ +L + + K +
Sbjct: 570 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISDEG 629
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSF 378
+ LV+ S GD+R+AIT LQS RL GG+ I + + ++ GVIP I + + SF
Sbjct: 630 IAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKINGVFAACQSGSF 689
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
LE ++DLI E ++ATQL +Q HD+V+ ++LSDKQK++I EKLAE + L DGA EY
Sbjct: 690 DKLEAVVKDLIDEGHAATQLVNQLHDVVVE-NNLSDKQKSIITEKLAEVDKCLADGADEY 748
Query: 439 IQILDLGSIVIK 450
+Q++ L + V++
Sbjct: 749 LQLISLCATVMQ 760
>gi|405961159|gb|EKC27004.1| Replication factor C subunit 4 [Crassostrea gigas]
Length = 343
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 163/265 (61%), Positives = 199/265 (75%), Gaps = 4/265 (1%)
Query: 1 MEAFLR---TGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVL 57
M F + G KD S GK++ K VPWVEK+RP+++DDV Q EVV+VL
Sbjct: 1 MHPFFKPREAGTTSKDPKSLEAAGSGKGGKSKQKHVPWVEKFRPRSVDDVAYQDEVVAVL 60
Query: 58 KKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDK 116
KK L G+DLP+ LFYGPPGTGKTST++AA LFG +M + R+LELNASD+RGI V+R+K
Sbjct: 61 KKSLEGSDLPNLLFYGPPGTGKTSTILAAARSLFGAEMMKLRVLELNASDERGINVVREK 120
Query: 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
VK FAQ TASG DGKPCPPFKI+ILDEADSMT AQAALRRTMEKE+KSTRFCLICNY
Sbjct: 121 VKKFAQTTASGTRPDGKPCPPFKIIILDEADSMTSPAQAALRRTMEKESKSTRFCLICNY 180
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
VS II+P+ SRC+KFRFKPLA+ + RLQ ICE E + D ++++ L+++S GDMR+AI
Sbjct: 181 VSRIIEPIASRCAKFRFKPLADQILTERLQGICEAEKISYDKESIKALIDSSEGDMRKAI 240
Query: 237 TCLQSCARLKGGEGIVNEDVLEVTG 261
T LQS ARLKG E + DV E+ G
Sbjct: 241 TYLQSVARLKGDEEVSKADVFEIAG 265
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 71/131 (54%), Gaps = 14/131 (10%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQ 379
++++ L+++S GDMR+AIT LQS ARLKG E + DV E+ G N +I ++ S +
Sbjct: 223 ESIKALIDSSEGDMRKAITYLQSVARLKGDEEVSKADVFEIAGA--NTYIYEI----SHR 276
Query: 380 VLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYI 439
+ E+ L + + D + S S ++K +++K L DGA EY+
Sbjct: 277 IHRN--ENRFLTEVISDETIDVLIKVCHSNSYEKLEKKVQVVDKC------LMDGADEYL 328
Query: 440 QILDLGSIVIK 450
Q++ L + +++
Sbjct: 329 QLMALFTTMMR 339
>gi|355716186|gb|AES05531.1| replication factor C 4, 37kDa [Mustela putorius furo]
Length = 272
Score = 337 bits (864), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 165/271 (60%), Positives = 205/271 (75%), Gaps = 2/271 (0%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTR-NKPVPWVEKYRPKTIDDVIEQQEVVSVLKK 59
M+AFL+ + P + +SG+ + KPVPWVEKYRPK +D+V Q+EVV+VLKK
Sbjct: 1 MQAFLKGTSVSTKPPLKDRGVAGSSGENKKTKPVPWVEKYRPKCVDEVAFQEEVVAVLKK 60
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVK 118
L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R+KVK
Sbjct: 61 SLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVK 120
Query: 119 TFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS 178
FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICNYVS
Sbjct: 121 NFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVS 180
Query: 179 CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITC 238
II+PLTSRCSKFRFKPL++ RL I ++E V + + LV+ S GD+R+AIT
Sbjct: 181 RIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRKAITF 240
Query: 239 LQSCARLKGGEGIVNEDVLEVTGVIPKPWIE 269
LQS RL GG+ I + + ++ GVIP I+
Sbjct: 241 LQSATRLTGGKEITEKVITDIAGVIPAETID 271
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIE 370
LV+ S GD+R+AIT LQS RL GG+ I + + ++ GVIP I+
Sbjct: 226 LVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAETID 271
>gi|402861875|ref|XP_003895301.1| PREDICTED: replication factor C subunit 4, partial [Papio anubis]
Length = 298
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 166/270 (61%), Positives = 203/270 (75%), Gaps = 6/270 (2%)
Query: 1 MEAFLR-----TGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ T L + T+ S+ + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKSLLTKDRGVAATAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I E+E+V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISDEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIP 264
AIT LQS RL GG+ I + ++ GVIP
Sbjct: 241 AITFLQSATRLTGGKEITERVITDIAGVIP 270
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP 365
LV+ S GD+R+AIT LQS RL GG+ I + ++ GVIP
Sbjct: 230 LVKVSEGDLRKAITFLQSATRLTGGKEITERVITDIAGVIP 270
>gi|442749365|gb|JAA66842.1| Putative replication factor c subunit rfc4 [Ixodes ricinus]
Length = 274
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 158/248 (63%), Positives = 189/248 (76%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M AFL++ PS + + R VPWVEK RPKT+DDV Q EVVSVLKK
Sbjct: 27 MHAFLKSANPNLAPPSKERGKDTKQKSKREVHVPWVEKSRPKTVDDVAHQDEVVSVLKKS 86
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
L GADLP+ LFYGPPGTGKTST++A +LFGDMY+ RILELNASD+RGIQV+R+K+K F
Sbjct: 87 LLGADLPNLLFYGPPGTGKTSTILALSRELFGDMYKSRILELNASDERGIQVVREKIKNF 146
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
+Q TA DG+PCPPFKIVILDEADSMT +AQAALRRTMEK+ K+TRFCLICNY+S I
Sbjct: 147 SQLTAHATRPDGRPCPPFKIVILDEADSMTPSAQAALRRTMEKQPKTTRFCLICNYISRI 206
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I+PLTSRCSKFRFKPL ++ +L RLQ IC E+V CD + + L+E GDMRRAIT +Q
Sbjct: 207 IEPLTSRCSKFRFKPLPKDILLERLQKICTSENVQCDDEVFDFLMEACEGDMRRAITLIQ 266
Query: 241 SCARLKGG 248
S ++LK G
Sbjct: 267 SVSKLKLG 274
>gi|349605347|gb|AEQ00618.1| Replication factor C subunit 4-like protein, partial [Equus
caballus]
Length = 266
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 164/266 (61%), Positives = 203/266 (76%), Gaps = 5/266 (1%)
Query: 25 SGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
SG+ + KPVPWVEKYRPK +D+V Q+EVV+VLKK L GADLP+ LFYGPPGTGKTST+
Sbjct: 1 SGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 60
Query: 84 IAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
+AA +LFG +++R R+LELNASD+RGIQV+R+KVK FAQ T SG DGKPCPPFKIVI
Sbjct: 61 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 120
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEADSMT AAQAALRRTMEKE+K+TRFCLICNY+S II+PLTSRCSKFRFKPL++
Sbjct: 121 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQ 180
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
RL I +E V + + LV+ S GD+R+AIT LQS RL GG+ + + + ++ GV
Sbjct: 181 QRLLDIAGKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAGV 240
Query: 263 IPKPWIEKLL---KVDSFQVLEKYIE 285
IP I+ LL + SF LE ++
Sbjct: 241 IPAETIDGLLAACQSGSFDKLEAAVK 266
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 9/128 (7%)
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLF------DQFHDIVMLASSLSDKQKALFKA 321
+EK K F ++ YI +I S F D+ +L + + K +
Sbjct: 139 MEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAGKEHVKISNEG 198
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSF 378
+ LV+ S GD+R+AIT LQS RL GG+ + + + ++ GVIP I+ LL + SF
Sbjct: 199 IAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAGVIPAETIDGLLAACQSGSF 258
Query: 379 QVLEKYIE 386
LE ++
Sbjct: 259 DKLEAAVK 266
>gi|119598577|gb|EAW78171.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_b [Homo
sapiens]
gi|194386378|dbj|BAG59753.1| unnamed protein product [Homo sapiens]
Length = 303
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 162/268 (60%), Positives = 202/268 (75%), Gaps = 6/268 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ S + + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I ++E+V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGV 262
AIT LQS RL GG+ I + + ++ GV
Sbjct: 241 AITFLQSATRLTGGKEITEKVITDIAGV 268
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 363
LV+ S GD+R+AIT LQS RL GG+ I + + ++ GV
Sbjct: 230 LVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGV 268
>gi|168030360|ref|XP_001767691.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681011|gb|EDQ67442.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 338
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 161/298 (54%), Positives = 205/298 (68%), Gaps = 8/298 (2%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
WVEKYRP+ + DV Q+EVV L L +LPH LFYGPPGTGKT+T +A CHQLFG +
Sbjct: 11 WVEKYRPRKVKDVAHQEEVVRTLTNTLETGNLPHLLFYGPPGTGKTTTALAICHQLFGPE 70
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+Y+ R+LELNASDDRGI V+R K+K FA A G G PCPPFK++ILDEADSMT A
Sbjct: 71 LYKTRVLELNASDDRGINVVRTKIKDFAG-VAVGAGVSGYPCPPFKVLILDEADSMTEDA 129
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTME +K TRFC ICNYVS II+PL SRC+KFRFKPL EN M R+QYIC++E
Sbjct: 130 QNALRRTMENYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLLENVMQNRIQYICQEEG 189
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK 273
+ D +AL TL S GD+RRAITCLQ RL G I +++++ V+G++P +E LLK
Sbjct: 190 LKLDQEALSTLSRVSEGDLRRAITCLQCAVRLYGS-NISSKEIISVSGIVPDSVLEGLLK 248
Query: 274 V---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVET 328
F + + + D+I E + +Q+ Q D V+ + ++SD QKA + E L ET
Sbjct: 249 ACQSGQFDLAHQEVRDIIAEGHPVSQILSQLFDFVVQSPNISDIQKA--RITERLAET 304
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 85/135 (62%), Gaps = 4/135 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+AL TL S GD+RRAITCLQ RL G I +++++ V+G++P+ +E LLK
Sbjct: 195 EALSTLSRVSEGDLRRAITCLQCAVRLYGS-NISSKEIISVSGIVPDSVLEGLLKACQSG 253
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F + + + D+I E + +Q+ Q D V+ + ++SD QKA I E+LAE + L DGA
Sbjct: 254 QFDLAHQEVRDIIAEGHPVSQILSQLFDFVVQSPNISDIQKARITERLAETDKCLIDGAD 313
Query: 437 EYIQILDLGSIVIKA 451
EY+Q++D+ S ++A
Sbjct: 314 EYLQLMDVASNTMRA 328
>gi|167523687|ref|XP_001746180.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775451|gb|EDQ89075.1| predicted protein [Monosiga brevicollis MX1]
Length = 323
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 155/290 (53%), Positives = 212/290 (73%), Gaps = 5/290 (1%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DM 94
+E RPKT DV Q EVV++L+KC++G D+PH LFYGPPGTGKTST++A + FG +
Sbjct: 1 MEHSRPKTTHDVAHQSEVVAMLQKCVAGGDMPHTLFYGPPGTGKTSTILAVAREFFGPQL 60
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+ER+LELNASD+RGI V+R+K+K FA TA+ G PCPPFKI++LDEAD+MT AAQ
Sbjct: 61 MKERVLELNASDERGIGVVREKIKNFAVMTANTRVSGGYPCPPFKIILLDEADAMTEAAQ 120
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRT+E+ + TRFC++CNYVS II+PL SRC+KFRFKPL++ T+L RLQ+I + E+V
Sbjct: 121 SALRRTIEQHSNVTRFCMVCNYVSRIIEPLASRCAKFRFKPLSDATVLARLQHIRDAENV 180
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL-- 272
C + L+T+V+ SGGDMR+AIT LQSC RL+G GI V +V+G++P+ I +LL
Sbjct: 181 KCADEVLQTIVKVSGGDMRQAITFLQSCHRLRGDLGIETSHVEDVSGLVPQSTINELLSR 240
Query: 273 -KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVM-LASSLSDKQKALFK 320
+SF+ L+ ++D IL +S +QL Q H+ +M + S K K L K
Sbjct: 241 CNENSFEALQASVDDAILSGFSGSQLLHQLHETLMEMEMDESKKAKILHK 290
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 105/186 (56%), Gaps = 10/186 (5%)
Query: 268 IEKLLKVDSFQVLEKYIEDLI--LEAYSATQLFDQFHDIVMLA--SSLSDKQ--KALFKA 321
IE+ V F ++ Y+ +I L + A F D +LA + D + K +
Sbjct: 127 IEQHSNVTRFCMVCNYVSRIIEPLASRCAKFRFKPLSDATVLARLQHIRDAENVKCADEV 186
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSF 378
L+T+V+ SGGDMR+AIT LQSC RL+G GI V +V+G++P I +LL +SF
Sbjct: 187 LQTIVKVSGGDMRQAITFLQSCHRLRGDLGIETSHVEDVSGLVPQSTINELLSRCNENSF 246
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
+ L+ ++D IL +S +QL Q H+ +M + + +KA IL K+A + RL DGA E
Sbjct: 247 EALQASVDDAILSGFSGSQLLHQLHETLMEM-EMDESKKAKILHKMAVADKRLIDGADEQ 305
Query: 439 IQILDL 444
+ +LD+
Sbjct: 306 LTLLDV 311
>gi|170094016|ref|XP_001878229.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646683|gb|EDR10928.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 359
Score = 324 bits (831), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 167/327 (51%), Positives = 216/327 (66%), Gaps = 21/327 (6%)
Query: 7 TGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADL 66
T K G A S K +V + PWVEKYRPKTID+V Q+ V+VL+K L+ +L
Sbjct: 5 TPKTGSSAESVPKHTVDPRLQ------PWVEKYRPKTIDEVSAQEHTVAVLRKTLTSTNL 58
Query: 67 PHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQT- 124
PH LFYGPPGTGKTST++A QLFG D +R R+LELNASD+RGI ++RDK+K FA+QT
Sbjct: 59 PHMLFYGPPGTGKTSTILALARQLFGPDNFRNRVLELNASDERGISIVRDKIKNFARQTP 118
Query: 125 -ASGFNQDGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCII 181
A DGK PCPP+KI+ILDEADSMT AQ ALRR ME + TRFCL+CNYV+ II
Sbjct: 119 RAQAVASDGKSYPCPPYKIIILDEADSMTQDAQGALRRIMETYARITRFCLVCNYVTRII 178
Query: 182 QPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
+PL SRCSKFRF PL + +RL YI E + + + L+ TS GD+RRAIT LQS
Sbjct: 179 EPLASRCSKFRFTPLDSKSSFSRLSYIATAEHIDTNPAVINALISTSSGDLRRAITYLQS 238
Query: 242 CARLKGG----EGIVNEDVLEVTGVIPKPWIEK---LLKVD---SFQVLEKYIEDLILEA 291
+RL I+ D+ E+ GV+P I K +L V+ SF+ + K ++ L+ E
Sbjct: 239 ASRLSSSTIPPTPILPSDIQEIAGVVPDAVINKFSGILGVEKKTSFESINKEVKSLMREG 298
Query: 292 YSATQLFDQFHDIVMLASSLSDKQKAL 318
YSATQ+ Q HD+V+L +L+ +QK+L
Sbjct: 299 YSATQILSQLHDVVILHPTLTGRQKSL 325
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 82/140 (58%), Gaps = 10/140 (7%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGE----GIVNEDVLEVTGVIPNPWIEK---LLK 374
+ L+ TS GD+RRAIT LQS +RL I+ D+ E+ GV+P+ I K +L
Sbjct: 218 INALISTSSGDLRRAITYLQSASRLSSSTIPPTPILPSDIQEIAGVVPDAVINKFSGILG 277
Query: 375 VD---SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 431
V+ SF+ + K ++ L+ E YSATQ+ Q HD+V+ +L+ +QK+L AE + L
Sbjct: 278 VEKKTSFESINKEVKSLMREGYSATQILSQLHDVVILHPTLTGRQKSLCALVFAEADKAL 337
Query: 432 QDGASEYIQILDLGSIVIKA 451
DGA E + IL+ G + KA
Sbjct: 338 CDGADEELWILEAGLRIHKA 357
>gi|302690912|ref|XP_003035135.1| hypothetical protein SCHCODRAFT_52161 [Schizophyllum commune H4-8]
gi|300108831|gb|EFJ00233.1| hypothetical protein SCHCODRAFT_52161 [Schizophyllum commune H4-8]
Length = 376
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 161/311 (51%), Positives = 208/311 (66%), Gaps = 27/311 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTIDDV Q+ VSVL+K L+ +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 30 PWVEKYRPKTIDDVSAQEHTVSVLQKALTSTNLPHMLFYGPPGTGKTSTILALSRQLFGP 89
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT--ASGFNQDGK--PCPPFKIVILDEADS 148
D +R R+LELNASD+RGI ++R+KVK FA+QT A DGK PCPP+KI+ILDEADS
Sbjct: 90 DNFRSRVLELNASDERGISIVREKVKNFARQTPRAQAVASDGKEYPCPPYKIIILDEADS 149
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR ME + TRFCL+CNYV+ II+PL SRCSKFRF PL ++ RL YI
Sbjct: 150 MTQDAQGALRRIMETHARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSSSAAARLSYI 209
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTGVIP 264
E+V ++TL+ TSGGD+RRAIT LQS +RL I D+ E+ GV+P
Sbjct: 210 ATNENVAVSPPVIDTLISTSGGDLRRAITYLQSASRLSSSTDPPTPITPVDIQEIAGVVP 269
Query: 265 KPWIEKL-----LKVD-------------SFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
I+ ++VD FQ+++ +++++ + YSATQ+ Q HD+V+
Sbjct: 270 DGVIDNFARAVGIEVDGSDAMDVDGLQRRGFQLVQSKVKEVMRDGYSATQILTQLHDLVI 329
Query: 307 LASSLSDKQKA 317
L +LS + KA
Sbjct: 330 LHPTLSARNKA 340
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 81/146 (55%), Gaps = 22/146 (15%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTGVIPNPWIEKL----- 372
++TL+ TSGGD+RRAIT LQS +RL I D+ E+ GV+P+ I+
Sbjct: 222 IDTLISTSGGDLRRAITYLQSASRLSSSTDPPTPITPVDIQEIAGVVPDGVIDNFARAVG 281
Query: 373 LKVDS-------------FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKAL 419
++VD FQ+++ +++++ + YSATQ+ Q HD+V+ +LS + KA
Sbjct: 282 IEVDGSDAMDVDGLQRRGFQLVQSKVKEVMRDGYSATQILTQLHDLVILHPTLSARNKAQ 341
Query: 420 ILEKLAECNARLQDGASEYIQILDLG 445
AE + L DGA E + IL++G
Sbjct: 342 SALVFAEADKALCDGADEELWILEVG 367
>gi|326429974|gb|EGD75544.1| replication factor C 4 [Salpingoeca sp. ATCC 50818]
Length = 345
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 152/288 (52%), Positives = 209/288 (72%), Gaps = 5/288 (1%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRP+T DV Q +V++ L+ +SGAD+PH LFYGPPGTGKTST++A +LFG
Sbjct: 24 PWVEKYRPRTTADVAHQSQVIATLRATISGADMPHLLFYGPPGTGKTSTILALSRELFGP 83
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ +ER+LELNASD+RGI V+R+K+KTFA + S DG PCPPFKI+ILDEAD+MT A
Sbjct: 84 QLMKERVLELNASDERGISVVREKIKTFASTSVSK-GVDGYPCPPFKIIILDEADAMTAA 142
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRRTMEK + TRFCLICNY+S II+PL SRC+KFRFKPL+ +T++ RLQ+I ++E
Sbjct: 143 AQSALRRTMEKYSNVTRFCLICNYISRIIEPLASRCAKFRFKPLSRDTLVGRLQHIRDKE 202
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
V C + L +++ GDMR+AIT LQS +RL G G+ V E+ G IP + LL
Sbjct: 203 DVQCSDEVLARIIDLVDGDMRQAITFLQSASRLCGSSGVEVHHVEEIAGAIPNAVMTDLL 262
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
+ SF+ L++ ++ ++L+ +SA + ++ +V+ A +SD QKA
Sbjct: 263 DKCRQGSFENLQETVQSILLDGFSADTIVEELLQLVVEADDISDTQKA 310
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 79/128 (61%), Gaps = 3/128 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
+ L +++ GDMR+AIT LQS +RL G G+ V E+ G IPN + LL +
Sbjct: 209 EVLARIIDLVDGDMRQAITFLQSASRLCGSSGVEVHHVEEIAGAIPNAVMTDLLDKCRQG 268
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
SF+ L++ ++ ++L+ +SA + ++ +V+ A +SD QKA I KLA+ + RL DGA
Sbjct: 269 SFENLQETVQSILLDGFSADTIVEELLQLVVEADDISDTQKADIAHKLAQVDKRLVDGAD 328
Query: 437 EYIQILDL 444
E +QI+DL
Sbjct: 329 EELQIMDL 336
>gi|444509952|gb|ELV09445.1| Replication factor C subunit 4 [Tupaia chinensis]
Length = 322
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 173/328 (52%), Positives = 215/328 (65%), Gaps = 51/328 (15%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVS-TSGKT----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + PS+ V+ T+G + + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGSSISTKPPSTKDRGVAGTAGGSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGK CPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKACPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I E+E+V
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVK------------------- 221
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEA 291
I NE VIP I+ + + SF LE ++DLI E
Sbjct: 222 ----------------ISNE-------VIPTETIDGIFAACQSGSFDKLEAVVKDLIDEG 258
Query: 292 YSATQLFDQFHDIVMLASSLSDKQKALF 319
++A+QL +Q HDIV+ LSDK K++
Sbjct: 259 HAASQLINQLHDIVVENDDLSDKHKSII 286
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 62/99 (62%), Gaps = 3/99 (3%)
Query: 355 EDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASS 411
E+V VIP I+ + + SF LE ++DLI E ++A+QL +Q HDIV+
Sbjct: 218 ENVKISNEVIPTETIDGIFAACQSGSFDKLEAVVKDLIDEGHAASQLINQLHDIVVENDD 277
Query: 412 LSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 450
LSDK K++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 278 LSDKHKSIITEKLAEVDKCLADGADEHLQLISLCATVMQ 316
>gi|297612760|ref|NP_001066296.2| Os12g0176500 [Oryza sativa Japonica Group]
gi|10798806|dbj|BAB16441.1| replication factor C 37 kDa subunit [Oryza sativa Japonica Group]
gi|77553810|gb|ABA96606.1| Activator 1 37 kDa subunit, putative, expressed [Oryza sativa
Japonica Group]
gi|125535960|gb|EAY82448.1| hypothetical protein OsI_37665 [Oryza sativa Indica Group]
gi|125578677|gb|EAZ19823.1| hypothetical protein OsJ_35406 [Oryza sativa Japonica Group]
gi|215737297|dbj|BAG96226.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255670097|dbj|BAF29315.2| Os12g0176500 [Oryza sativa Japonica Group]
Length = 339
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 155/288 (53%), Positives = 199/288 (69%), Gaps = 5/288 (1%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRP+ + DV Q+EVV VL L ADLPH LFYGPPGTGKT+T +A +QL+G
Sbjct: 10 PWVEKYRPRQVKDVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++Y+ R+LELNASDDRGI V+R K+K FA + G PCPP+KI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTED 129
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M R+ +IC +E
Sbjct: 130 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEE 189
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
+ D +AL TL S GD+RRAIT LQS ARL G I + D++ V+G IP+ ++ LL
Sbjct: 190 GLSLDAQALATLSTISNGDLRRAITYLQSAARL-FGSSISSTDLISVSGAIPEDVVKSLL 248
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
K F V K + ++I + Y +QL QF D+++ A + D+QKA
Sbjct: 249 ASCKSGEFDVANKEVNNIIADGYPVSQLISQFLDVIVNADDIPDEQKA 296
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 84/135 (62%), Gaps = 4/135 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
+AL TL S GD+RRAIT LQS ARL G I + D++ V+G IP ++ LL K
Sbjct: 196 QALATLSTISNGDLRRAITYLQSAARLFGS-SISSTDLISVSGAIPEDVVKSLLASCKSG 254
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F V K + ++I + Y +QL QF D++++A + D+QKA I +KL E + L DGA
Sbjct: 255 EFDVANKEVNNIIADGYPVSQLISQFLDVIVNADDIPDEQKARICKKLGEADKCLVDGAD 314
Query: 437 EYIQILDLGSIVIKA 451
EY+Q+LD+ S I+A
Sbjct: 315 EYLQLLDVASETIRA 329
>gi|356509379|ref|XP_003523427.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Glycine
max]
Length = 342
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 160/290 (55%), Positives = 201/290 (69%), Gaps = 8/290 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q EVV VL L PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ--DGKPCPPFKIVILDEADSMT 150
++Y+ R+LELNASDDRGI V+R K+K FA A G NQ G PCPPFKI++LDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAA-VAVGTNQRKSGYPCPPFKIIVLDEADSMT 128
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME +K TRF ICNYVS II+PL SRC+KFRFKPL+E M +R+ YI +
Sbjct: 129 EDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQ 188
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEK 270
+E + D +AL TL S GD+RRAIT LQS ARL G I +E+++ V+GV+P +E+
Sbjct: 189 EEGLCLDAEALSTLSSISHGDLRRAITYLQSAARL-FGSSISSENLISVSGVVPAKVVEE 247
Query: 271 LLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
LLK +F + K + + I E Y A+Q+ Q + ++ + LSD+QKA
Sbjct: 248 LLKACKSGNFDLANKEVNNFIAEGYPASQMLTQLFESIVEDNDLSDEQKA 297
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 86/135 (63%), Gaps = 4/135 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+AL TL S GD+RRAIT LQS ARL G I +E+++ V+GV+P +E+LLK
Sbjct: 197 EALSTLSSISHGDLRRAITYLQSAARLFGS-SISSENLISVSGVVPAKVVEELLKACKSG 255
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+F + K + + I E Y A+Q+ Q + ++ + LSD+QKA I +KL E + L DGA
Sbjct: 256 NFDLANKEVNNFIAEGYPASQMLTQLFESIVEDNDLSDEQKARISKKLGEADKCLVDGAD 315
Query: 437 EYIQILDLGSIVIKA 451
EY+Q+LD+ S +KA
Sbjct: 316 EYLQLLDVVSNTMKA 330
>gi|18395021|ref|NP_564148.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|15810343|gb|AAL07059.1| putative replication factor [Arabidopsis thaliana]
gi|17065122|gb|AAL32715.1| Similar replication factor C, 37-kDa subunit [Arabidopsis thaliana]
gi|21536935|gb|AAM61276.1| putative replication factor [Arabidopsis thaliana]
gi|34098857|gb|AAQ56811.1| At1g21690 [Arabidopsis thaliana]
gi|332192018|gb|AEE30139.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 339
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 164/301 (54%), Positives = 203/301 (67%), Gaps = 9/301 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q+EVV VL L AD PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y+ R+LELNASDDRGI V+R K+K FA S Q G PCP FKI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M R+ +IC +
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL 271
E + D +AL TL S GD+RRAIT LQS RL G I + D+L V+GV+P + KL
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGST-ITSTDLLNVSGVVPLEVVNKL 248
Query: 272 L---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLA-SSLSDKQKALFKALETLVE 327
K F + K +++++ E Y A+Q+ +Q DIV A S ++D QKA K + L E
Sbjct: 249 FTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKA--KICKCLAE 306
Query: 328 T 328
T
Sbjct: 307 T 307
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 84/136 (61%), Gaps = 5/136 (3%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
+AL TL S GD+RRAIT LQS RL G I + D+L V+GV+P + KL K
Sbjct: 197 EALSTLSSISQGDLRRAITYLQSATRLFGST-ITSTDLLNVSGVVPLEVVNKLFTACKSG 255
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASS-LSDKQKALILEKLAECNARLQDGA 435
F + K +++++ E Y A+Q+ +Q DIV A S ++D QKA I + LAE + RL DGA
Sbjct: 256 DFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDKRLVDGA 315
Query: 436 SEYIQILDLGSIVIKA 451
EY+Q+LD+ S I A
Sbjct: 316 DEYLQLLDVASSTICA 331
>gi|334182756|ref|NP_001185061.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192021|gb|AEE30142.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 341
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 164/301 (54%), Positives = 203/301 (67%), Gaps = 9/301 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q+EVV VL L AD PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y+ R+LELNASDDRGI V+R K+K FA S Q G PCP FKI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M R+ +IC +
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL 271
E + D +AL TL S GD+RRAIT LQS RL G I + D+L V+GV+P + KL
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGST-ITSTDLLNVSGVVPLEVVNKL 248
Query: 272 L---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLA-SSLSDKQKALFKALETLVE 327
K F + K +++++ E Y A+Q+ +Q DIV A S ++D QKA K + L E
Sbjct: 249 FTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKA--KICKCLAE 306
Query: 328 T 328
T
Sbjct: 307 T 307
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 77/131 (58%), Gaps = 9/131 (6%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
+AL TL S GD+RRAIT LQS RL G I + D+L V+GV+P + KL K
Sbjct: 197 EALSTLSSISQGDLRRAITYLQSATRLFGST-ITSTDLLNVSGVVPLEVVNKLFTACKSG 255
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSA-SSLSDKQKALILEKLAECNAR----L 431
F + K +++++ E Y A+Q+ +Q DIV A S ++D QKA I + LAE + L
Sbjct: 256 DFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDKYNLCPL 315
Query: 432 QDGASEYIQIL 442
++G+ +QIL
Sbjct: 316 RNGSRLLMQIL 326
>gi|393220481|gb|EJD05967.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 370
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 158/313 (50%), Positives = 212/313 (67%), Gaps = 29/313 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTIDDV Q+ +V+VL+K L+ +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 23 PWVEKYRPKTIDDVSSQEHIVAVLQKTLTSTNLPHMLFYGPPGTGKTSTILALSRQLFGP 82
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT--ASGFNQDGK--PCPPFKIVILDEADS 148
D ++ R+LELNASD+RGI ++R+K+K FA+QT A DGK PCPP+KI+ILDEADS
Sbjct: 83 DNFKNRVLELNASDERGITIVREKIKNFARQTPRAQAVASDGKTYPCPPYKIIILDEADS 142
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MTH AQ+ALRR ME + TRFCL+CNYV+ II+PL SRCSKFRF+PL ++ RLQ+I
Sbjct: 143 MTHDAQSALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFRPLDDSATKLRLQHI 202
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTGVIP 264
+ E V + + TL+ SGGD+RR+IT LQS +RL I ++D+ E+ GV+P
Sbjct: 203 ADAERVPVIPEVVSTLINVSGGDLRRSITYLQSASRLSSSTDPPTEITSQDIQEIAGVVP 262
Query: 265 KPWIE---KLLKVD-----------------SFQVLEKYIEDLILEAYSATQLFDQFHDI 304
+ ++L VD F+ ++ ++ LI E YSA QL Q HD+
Sbjct: 263 DRVVNSFGRVLGVDISDGDEMDVDDAKKRRKGFEAVKFKVKGLIREGYSAFQLLSQLHDL 322
Query: 305 VMLASSLSDKQKA 317
++L +L+ +QKA
Sbjct: 323 IILHPTLTARQKA 335
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 82/154 (53%), Gaps = 24/154 (15%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTGVIPNPWIE---KLLK 374
+ TL+ SGGD+RR+IT LQS +RL I ++D+ E+ GV+P+ + ++L
Sbjct: 215 VSTLINVSGGDLRRSITYLQSASRLSSSTDPPTEITSQDIQEIAGVVPDRVVNSFGRVLG 274
Query: 375 VD-----------------SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQK 417
VD F+ ++ ++ LI E YSA QL Q HD+++ +L+ +QK
Sbjct: 275 VDISDGDEMDVDDAKKRRKGFEAVKFKVKGLIREGYSAFQLLSQLHDLIILHPTLTARQK 334
Query: 418 ALILEKLAECNARLQDGASEYIQILDLGSIVIKA 451
A AE + L DGA E +Q+L++ V +A
Sbjct: 335 ARCAMVFAEADKALCDGADEELQVLEVALQVHQA 368
>gi|356515923|ref|XP_003526646.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Glycine
max]
Length = 342
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 160/290 (55%), Positives = 201/290 (69%), Gaps = 8/290 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q EVV VL L PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ--DGKPCPPFKIVILDEADSMT 150
++Y+ R+LELNASDDRGI V+R K+K FA A G NQ +G PCPPFKI++LDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAA-VAVGTNQCKNGYPCPPFKIIVLDEADSMT 128
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME +K TRF ICNYVS II+PL SRC+KFRFKPL+E M +R+ YI +
Sbjct: 129 EDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQ 188
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEK 270
+E + D +AL TL S GD+RRAIT LQS ARL G I +E+++ V+GV+P +E
Sbjct: 189 EEGLCLDAEALSTLSFISHGDLRRAITYLQSAARLFGS-SISSENLISVSGVVPAKVVEA 247
Query: 271 LLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
LLK +F + K + + I E Y A+Q+ Q + ++ + LSD+QKA
Sbjct: 248 LLKACKSGNFDLANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKA 297
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 85/135 (62%), Gaps = 4/135 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+AL TL S GD+RRAIT LQS ARL G I +E+++ V+GV+P +E LLK
Sbjct: 197 EALSTLSFISHGDLRRAITYLQSAARLFGS-SISSENLISVSGVVPAKVVEALLKACKSG 255
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+F + K + + I E Y A+Q+ Q + ++ + LSD+QKA I +KL E + L DGA
Sbjct: 256 NFDLANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARISKKLGEADKCLVDGAD 315
Query: 437 EYIQILDLGSIVIKA 451
EY+Q+LD+ S IKA
Sbjct: 316 EYLQLLDVVSNTIKA 330
>gi|390594192|gb|EIN03605.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 364
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 155/302 (51%), Positives = 209/302 (69%), Gaps = 18/302 (5%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTI+DV Q+ V+VL+K L+ +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 28 PWVEKYRPKTIEDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGP 87
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT--ASGFNQDGK--PCPPFKIVILDEADS 148
D +R R+LELNASD+RGI ++R+K+K FA+QT A + DGK PCPP+KI+ILDEADS
Sbjct: 88 DNFRSRVLELNASDERGISIVREKIKNFARQTPRAQAVSSDGKTYPCPPYKIIILDEADS 147
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQAALRR ME + TRFCL+CNYV+ II+PL SRCSKFRFKPL + +RLQ++
Sbjct: 148 MTQDAQAALRRIMENYARITRFCLVCNYVTRIIEPLASRCSKFRFKPLDPTSTSSRLQHV 207
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTGVIP 264
+ E V L+TLV S GD+RR+IT LQS +RL I D+ E+ GV+P
Sbjct: 208 ADAERVPVTPAVLDTLVSASQGDLRRSITYLQSASRLSASTDPPIPITPTDIQEIAGVVP 267
Query: 265 KPWIE---KLLKVDS------FQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQ 315
++ ++L VD+ F + + + +++ E YSA+QL Q HD+++L +L+ +
Sbjct: 268 DAVVKNFARVLGVDNRARKKGFDNIREKVREIMREGYSASQLLSQLHDLIILHPTLTARH 327
Query: 316 KA 317
K+
Sbjct: 328 KS 329
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 80/143 (55%), Gaps = 13/143 (9%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTGVIPNPWIE---KLLK 374
L+TLV S GD+RR+IT LQS +RL I D+ E+ GV+P+ ++ ++L
Sbjct: 220 LDTLVSASQGDLRRSITYLQSASRLSASTDPPIPITPTDIQEIAGVVPDAVVKNFARVLG 279
Query: 375 VDS------FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 428
VD+ F + + + +++ E YSA+QL Q HD+++ +L+ + K+ AE +
Sbjct: 280 VDNRARKKGFDNIREKVREIMREGYSASQLLSQLHDLIILHPTLTARHKSRCAMVFAEAD 339
Query: 429 ARLQDGASEYIQILDLGSIVIKA 451
L DGA E + IL++ V +A
Sbjct: 340 KALCDGADEELWILEVALKVHRA 362
>gi|297845144|ref|XP_002890453.1| EMB1968 [Arabidopsis lyrata subsp. lyrata]
gi|297336295|gb|EFH66712.1| EMB1968 [Arabidopsis lyrata subsp. lyrata]
Length = 339
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 163/301 (54%), Positives = 203/301 (67%), Gaps = 9/301 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q+EVV VL L AD PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y+ R+LELNASDDRGI V+R K+K FA S Q G PCP FKI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M R+ +IC +
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL 271
E + +AL TL S GD+RRAIT LQS RL G I + D+L+V+GV+P + KL
Sbjct: 190 EGLSLGGEALSTLSSISQGDLRRAITYLQSATRLFGST-ITSTDLLDVSGVVPLEVVNKL 248
Query: 272 L---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLA-SSLSDKQKALFKALETLVE 327
K F + K +++++ E Y A+Q+ +Q DIV A S ++D QKA K + L E
Sbjct: 249 FTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKA--KICKCLAE 306
Query: 328 T 328
T
Sbjct: 307 T 307
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 85/136 (62%), Gaps = 5/136 (3%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
+AL TL S GD+RRAIT LQS RL G I + D+L+V+GV+P + KL K
Sbjct: 197 EALSTLSSISQGDLRRAITYLQSATRLFGST-ITSTDLLDVSGVVPLEVVNKLFTACKSG 255
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASS-LSDKQKALILEKLAECNARLQDGA 435
F + K +++++ E Y A+Q+ +Q DIV A S ++D QKA I + LAE + RL DGA
Sbjct: 256 DFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDKRLVDGA 315
Query: 436 SEYIQILDLGSIVIKA 451
EY+Q+LD+ S I A
Sbjct: 316 DEYLQLLDVASNTILA 331
>gi|357463531|ref|XP_003602047.1| Replication factor C subunit [Medicago truncatula]
gi|357520353|ref|XP_003630465.1| Replication factor C subunit [Medicago truncatula]
gi|217073528|gb|ACJ85124.1| unknown [Medicago truncatula]
gi|355491095|gb|AES72298.1| Replication factor C subunit [Medicago truncatula]
gi|355524487|gb|AET04941.1| Replication factor C subunit [Medicago truncatula]
gi|388492316|gb|AFK34224.1| unknown [Medicago truncatula]
Length = 339
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 154/290 (53%), Positives = 200/290 (68%), Gaps = 8/290 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q+EVV VL L PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ--DGKPCPPFKIVILDEADSMT 150
++Y+ R+LELNASDDRGI V+R K+K FA A G N+ +G PCPP+KI++LDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAA-VAVGTNKPKNGYPCPPYKIIVLDEADSMT 128
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL E M +R+ YIC+
Sbjct: 129 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMSSRIVYICK 188
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEK 270
+E + D + L TL S GD+RRAIT LQS ARL G I ++D++ V+G++P +E
Sbjct: 189 EEGIYLDAEGLSTLSNISQGDLRRAITYLQSAARLFGS-SISSKDLISVSGIVPAEVVEA 247
Query: 271 LLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
LLK +F + K + + I E Y +Q+ Q + ++ + +SD+QKA
Sbjct: 248 LLKACRSGNFDLANKEVNNFIAEGYPVSQMLTQLFEAIVEENDISDEQKA 297
Score = 98.2 bits (243), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 83/135 (61%), Gaps = 4/135 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+ L TL S GD+RRAIT LQS ARL G I ++D++ V+G++P +E LLK
Sbjct: 197 EGLSTLSNISQGDLRRAITYLQSAARLFGS-SISSKDLISVSGIVPAEVVEALLKACRSG 255
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+F + K + + I E Y +Q+ Q + ++ + +SD+QKA I +KL E + L DGA
Sbjct: 256 NFDLANKEVNNFIAEGYPVSQMLTQLFEAIVEENDISDEQKARISKKLGEADKCLVDGAD 315
Query: 437 EYIQILDLGSIVIKA 451
EY+Q+LD+ S I+A
Sbjct: 316 EYLQLLDVVSNTIQA 330
>gi|357160682|ref|XP_003578842.1| PREDICTED: replication factor C subunit 4-like [Brachypodium
distachyon]
Length = 339
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 153/288 (53%), Positives = 198/288 (68%), Gaps = 5/288 (1%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRP+ + DV Q+EVV VL L ADLPH LFYGPPGTGKT+T +A +QL+G
Sbjct: 10 PWVEKYRPRQVKDVAHQEEVVRVLTNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++Y+ R+LELNASD+RGI V+R K+K FA + G PCPP+KI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDERGINVVRTKIKDFAAVAVGTARKGGYPCPPYKIIILDEADSMTED 129
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E+ M R+ +IC +E
Sbjct: 130 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMTNRILHICHEE 189
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
+ D +AL TL GD+RRAIT LQS ARL G I + D++ V+G IP+ ++ LL
Sbjct: 190 GLTLDAQALSTLSAICQGDLRRAITYLQSAARL-FGSSISSTDLISVSGAIPEDIVKSLL 248
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
K F V K + +I + Y +QL QF D+++ A + D+QKA
Sbjct: 249 GACKSGEFDVANKEVSSIIADGYPVSQLLSQFLDVIVNADDIPDEQKA 296
Score = 102 bits (253), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 82/135 (60%), Gaps = 4/135 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
+AL TL GD+RRAIT LQS ARL G I + D++ V+G IP ++ LL K
Sbjct: 196 QALSTLSAICQGDLRRAITYLQSAARL-FGSSISSTDLISVSGAIPEDIVKSLLGACKSG 254
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F V K + +I + Y +QL QF D++++A + D+QKA I +KL E + L DGA
Sbjct: 255 EFDVANKEVSSIIADGYPVSQLLSQFLDVIVNADDIPDEQKARICKKLGEADKCLVDGAD 314
Query: 437 EYIQILDLGSIVIKA 451
EY+Q+LD+ S I+A
Sbjct: 315 EYLQLLDMASETIRA 329
>gi|224158698|ref|XP_002192375.1| PREDICTED: replication factor C subunit 4-like, partial
[Taeniopygia guttata]
Length = 294
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 155/256 (60%), Positives = 197/256 (76%), Gaps = 4/256 (1%)
Query: 66 LPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQT 124
LP+ LFYGPPGTGKTST++AA +LFG D++R+R+LELNASD+RGIQVIR+KVK FAQ T
Sbjct: 1 LPNLLFYGPPGTGKTSTILAAATELFGPDLFRQRVLELNASDERGIQVIREKVKAFAQLT 60
Query: 125 ASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPL 184
ASG + DGK CPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICNY+S II+PL
Sbjct: 61 ASGSHSDGKMCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPL 120
Query: 185 TSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244
TSRCSKFRFKPL+++ RL + E+E V +A+ LV+ S GD+R+AIT LQS R
Sbjct: 121 TSRCSKFRFKPLSDSIQQQRLLDVSEKEHVKISNEAISYLVKVSEGDLRKAITFLQSATR 180
Query: 245 LKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQF 301
L GG+ I + + E+ GVIPK I++LL + SF+ LE ++LI E ++ QL +Q
Sbjct: 181 LMGGKEITEKIITEIAGVIPKETIDELLLGCQSGSFEKLETLAKNLINEGFAVAQLVNQL 240
Query: 302 HDIVMLASSLSDKQKA 317
HD ++ + SDKQK+
Sbjct: 241 HDTIVESEDYSDKQKS 256
Score = 108 bits (271), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 89/134 (66%), Gaps = 3/134 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
+A+ LV+ S GD+R+AIT LQS RL GG+ I + + E+ GVIP I++LL +
Sbjct: 155 EAISYLVKVSEGDLRKAITFLQSATRLMGGKEITEKIITEIAGVIPKETIDELLLGCQSG 214
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
SF+ LE ++LI E ++ QL +Q HD ++ + SDKQK+ I+EKLAE + L DGA
Sbjct: 215 SFEKLETLAKNLINEGFAVAQLVNQLHDTIVESEDYSDKQKSAIVEKLAEVDKCLADGAD 274
Query: 437 EYIQILDLGSIVIK 450
E++Q++ L ++V++
Sbjct: 275 EFLQLMSLCALVMQ 288
>gi|388505532|gb|AFK40832.1| unknown [Lotus japonicus]
Length = 342
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 158/290 (54%), Positives = 198/290 (68%), Gaps = 8/290 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q EVV VL L PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAYQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN--QDGKPCPPFKIVILDEADSMT 150
++Y+ R+LELNASDDRGI V+R K+K FA A G N + G PCPP+KI++LDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAA-VAVGTNPKKGGYPCPPYKIIVLDEADSMT 128
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M +R+ YIC
Sbjct: 129 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILYICN 188
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEK 270
+E + D + L TL S GD+RRAIT LQS ARL G I ++D++ V+GV+P+ +E
Sbjct: 189 EEGLHLDAEGLSTLSSISQGDLRRAITYLQSSARLFGSH-ISSKDLISVSGVVPENVVEA 247
Query: 271 LLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
+LK +F + K + + I E Y A+QL Q D ++ SDKQKA
Sbjct: 248 ILKACKSGNFDLANKEVNNFIAEGYPASQLLTQLFDAIVEEKGTSDKQKA 297
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 81/135 (60%), Gaps = 4/135 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+ L TL S GD+RRAIT LQS ARL G I ++D++ V+GV+P +E +LK
Sbjct: 197 EGLSTLSSISQGDLRRAITYLQSSARLFGSH-ISSKDLISVSGVVPENVVEAILKACKSG 255
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+F + K + + I E Y A+QL Q D ++ SDKQKA I +KL E + L DGA
Sbjct: 256 NFDLANKEVNNFIAEGYPASQLLTQLFDAIVEEKGTSDKQKARICKKLGEADKCLVDGAD 315
Query: 437 EYIQILDLGSIVIKA 451
EY+Q+LD+ S KA
Sbjct: 316 EYLQLLDVISNTTKA 330
>gi|116785245|gb|ABK23650.1| unknown [Picea sitchensis]
gi|224286688|gb|ACN41047.1| unknown [Picea sitchensis]
Length = 339
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 157/287 (54%), Positives = 198/287 (68%), Gaps = 5/287 (1%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRPK + DV Q+EVV L L +LPH LFYGPPGTGKT+T +A HQLFG
Sbjct: 11 WVEKYRPKQVKDVAHQEEVVRALTNTLETGNLPHLLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
Y+ R+LELNASDDRGI V+R K+K FA SG G CPPFKI+ILDEADSMT A
Sbjct: 71 YKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGNTNSGYLCPPFKIIILDEADSMTEDA 130
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTME +K TRFC ICNYVS II+PL SRC+KFRFKPL E+ M R+ +IC++E
Sbjct: 131 QNALRRTMETYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLVEDIMTGRILHICKEEG 190
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL- 272
V D AL L S GD+RRAIT LQS ARL G I + +++ V+G++PK ++ L
Sbjct: 191 VHLDSDALTMLSSISEGDLRRAITYLQSAARLY-GSSISSNNLISVSGIVPKEVVQSLYQ 249
Query: 273 --KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
K F + +K + D+I E + A+Q+F Q +D+V+ A+ +SD+ KA
Sbjct: 250 ACKTGQFDLAQKEVSDIIAEGHPASQIFSQLYDMVVQATDISDETKA 296
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 86/134 (64%), Gaps = 4/134 (2%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDS 377
AL L S GD+RRAIT LQS ARL G I + +++ V+G++P ++ L K
Sbjct: 197 ALTMLSSISEGDLRRAITYLQSAARLYGSS-ISSNNLISVSGIVPKEVVQSLYQACKTGQ 255
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
F + +K + D+I E + A+Q+F Q +D+V+ A+ +SD+ KA I ++LAE + L DGA E
Sbjct: 256 FDLAQKEVSDIIAEGHPASQIFSQLYDMVVQATDISDETKARISQRLAEADKCLIDGADE 315
Query: 438 YIQILDLGSIVIKA 451
Y+Q+LD+ S +++
Sbjct: 316 YLQLLDVASNAMRS 329
>gi|169854167|ref|XP_001833760.1| replication factor C [Coprinopsis cinerea okayama7#130]
gi|116505157|gb|EAU88052.1| replication factor C [Coprinopsis cinerea okayama7#130]
Length = 380
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 158/334 (47%), Positives = 214/334 (64%), Gaps = 30/334 (8%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
APS+ + + PWVEKYRPKTI+++ Q+ SVL + L+ A+LPH LFYG
Sbjct: 10 APSNKNNAAAAKHVVNPANQPWVEKYRPKTINEISAQEHTTSVLSRTLTSANLPHMLFYG 69
Query: 74 PPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTA---SGFN 129
PPGTGKTST++A +LFG D +R R+LELNASD+RGI ++RDK+K FA+QT +
Sbjct: 70 PPGTGKTSTILALARELFGPDNFRNRVLELNASDERGISIVRDKIKNFARQTPRAQQAVS 129
Query: 130 QDGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSR 187
DGK PCPP+KI+ILDEADSMT AQ ALRR ME K TRFCL+CNYV+ II+PL SR
Sbjct: 130 SDGKTYPCPPYKIIILDEADSMTQDAQGALRRIMETYAKITRFCLVCNYVTRIIEPLASR 189
Query: 188 CSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG 247
CSKFRF PL ++ RL YI + E++ ++ L+ TS GD+RRAIT LQS ARL G
Sbjct: 190 CSKFRFTPLDPDSASARLSYIAQAENIDISKPVIDALISTSHGDLRRAITYLQSAARLAG 249
Query: 248 GEG----IVNEDVLEVTGVIPK------------PWIEKLLKVD--------SFQVLEKY 283
I+ D+ E+ GV+P P ++ ++VD +F ++K
Sbjct: 250 SSDPPTPILPRDIQEIAGVVPDGVVNDFASTLGVPVEDEGMEVDGQTSRKATNFSGIQKK 309
Query: 284 IEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
+++L+ E YSATQ+ Q HD++ML L+ +K+
Sbjct: 310 VKELMREGYSATQILSQLHDLIMLHPELNGLKKS 343
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 84/154 (54%), Gaps = 24/154 (15%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTGVIPN----------- 366
++ L+ TS GD+RRAIT LQS ARL G I+ D+ E+ GV+P+
Sbjct: 223 IDALISTSHGDLRRAITYLQSAARLAGSSDPPTPILPRDIQEIAGVVPDGVVNDFASTLG 282
Query: 367 -PWIEKLLKVD--------SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQK 417
P ++ ++VD +F ++K +++L+ E YSATQ+ Q HD++M L+ +K
Sbjct: 283 VPVEDEGMEVDGQTSRKATNFSGIQKKVKELMREGYSATQILSQLHDLIMLHPELNGLKK 342
Query: 418 ALILEKLAECNARLQDGASEYIQILDLGSIVIKA 451
+ AE + L DGA E + +L++G + KA
Sbjct: 343 SKCALAFAEADKALCDGADEELWVLEVGLKIHKA 376
>gi|449449767|ref|XP_004142636.1| PREDICTED: replication factor C subunit 4-like [Cucumis sativus]
Length = 336
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 155/289 (53%), Positives = 198/289 (68%), Gaps = 6/289 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q EVV VL L A+ PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y+ R+LELNASDDRGI V+R K+K FA +SG Q G PCPPFKI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTE 129
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M R+ +I +
Sbjct: 130 DAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHIGNE 189
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL 271
E + D +AL TL S GD+RRAIT LQS ARL G I ++D++ V+G+IP+ ++ L
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSAARL-FGSSISSKDLVNVSGIIPQEVVDAL 248
Query: 272 L---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
K +F K + +++ E Y Q+ Q ++V+ + L D+QKA
Sbjct: 249 FVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKA 297
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 80/130 (61%), Gaps = 4/130 (3%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
+AL TL S GD+RRAIT LQS ARL G I ++D++ V+G+IP ++ L K
Sbjct: 197 EALSTLSSISQGDLRRAITYLQSAARL-FGSSISSKDLVNVSGIIPQEVVDALFVACKSG 255
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+F K + +++ E Y Q+ Q ++V+ + L D+QKA I +KLAE + L DGA
Sbjct: 256 NFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARICKKLAEADKCLVDGAD 315
Query: 437 EYIQILDLGS 446
EY+Q+LD+ S
Sbjct: 316 EYLQLLDVVS 325
>gi|389749254|gb|EIM90431.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 379
Score = 311 bits (796), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 160/338 (47%), Positives = 209/338 (61%), Gaps = 37/338 (10%)
Query: 15 PSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGP 74
PS T S T +P WVEKYRPKTI+DV Q+ +V+VL+K L+ +LPH LFYGP
Sbjct: 9 PSRKATKEQVSADTNLQP--WVEKYRPKTIEDVSAQEHIVAVLEKTLTSTNLPHMLFYGP 66
Query: 75 PGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQT--ASGFNQD 131
PGTGKTST++A QLFG D +R R+LELNASD+RGI ++R+K+K FA+QT A + D
Sbjct: 67 PGTGKTSTILALSRQLFGPDNFRSRVLELNASDERGIAIVREKIKNFARQTPRAQAVSSD 126
Query: 132 GK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189
GK PCPP+KI+ILDEADSMT AQAALRR ME TRFCL+CNYV+ II+PL SRCS
Sbjct: 127 GKAYPCPPYKIIILDEADSMTQDAQAALRRIMETYAHITRFCLVCNYVTRIIEPLASRCS 186
Query: 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249
KFRFKPL +++ RL++I E + L+ TSGGD+RRAIT LQS ARL
Sbjct: 187 KFRFKPLDDSSSTNRLEHIALSEQLRVKPDVFSALISTSGGDLRRAITYLQSAARLSAAS 246
Query: 250 ----GIVNEDVLEVTGVIPKPWIEKL--------------------------LKVDSFQV 279
I D+ E+ GV+P I K+ F +
Sbjct: 247 ETETTISPRDIQEIAGVVPDAVINNFARSLGIEVVNTEEGEEMDVDMDADQSTKLKGFDL 306
Query: 280 LEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
+ + ++ E YSA+Q+ Q HDI++L +L+ +QK+
Sbjct: 307 IRNKVRAMMREGYSASQVLTQLHDIIILHQNLTARQKS 344
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 33/174 (18%)
Query: 310 SLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGE----GIVNEDVLEVTGVIP 365
+LS++ + L+ TSGGD+RRAIT LQS ARL I D+ E+ GV+P
Sbjct: 206 ALSEQLRVKPDVFSALISTSGGDLRRAITYLQSAARLSAASETETTISPRDIQEIAGVVP 265
Query: 366 NPWIEKL--------------------------LKVDSFQVLEKYIEDLILEAYSATQLF 399
+ I K+ F ++ + ++ E YSA+Q+
Sbjct: 266 DAVINNFARSLGIEVVNTEEGEEMDVDMDADQSTKLKGFDLIRNKVRAMMREGYSASQVL 325
Query: 400 DQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANK 453
Q HDI++ +L+ +QK+ +AE + L DG+ E + +L+ + +K NK
Sbjct: 326 TQLHDIIILHQNLTARQKSKCALVMAEADKALCDGSDEELWVLE---VALKVNK 376
>gi|147858312|emb|CAN83520.1| hypothetical protein VITISV_019805 [Vitis vinifera]
Length = 341
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 156/289 (53%), Positives = 199/289 (68%), Gaps = 7/289 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q EVV VL L + PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y+ R+LELNASDDRGI V+R K+K FA SG Q G PCPP+KI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAXVAVGSGHRQGGYPCPPYKIIILDEADSMTE 129
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M +R+ +IC++
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKE 189
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL 271
E + D +AL TL S GD+RRAIT LQ ARL G I ++D++ V+GV+P+ ++ L
Sbjct: 190 EELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGS-IISSKDLISVSGVVPQHVVQAL 248
Query: 272 L---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
K F K + ++I E Y +Q+ Q D+V+ A +SD+QKA
Sbjct: 249 FAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEA-DISDEQKA 296
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 83/135 (61%), Gaps = 5/135 (3%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
+AL TL S GD+RRAIT LQ ARL G I ++D++ V+GV+P ++ L K
Sbjct: 197 EALSTLSSISQGDLRRAITYLQGAARLFGS-IISSKDLISVSGVVPQHVVQALFAACKSG 255
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F K + ++I E Y +Q+ Q D+V+ A +SD+QKA I ++LAE + L DGA
Sbjct: 256 DFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEAD-ISDEQKARICKRLAEADKCLVDGAD 314
Query: 437 EYIQILDLGSIVIKA 451
EY+Q+LD+ S ++A
Sbjct: 315 EYLQLLDVASNAMRA 329
>gi|225459625|ref|XP_002285874.1| PREDICTED: replication factor C subunit 4 isoform 1 [Vitis
vinifera]
gi|302141781|emb|CBI18984.3| unnamed protein product [Vitis vinifera]
Length = 341
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 156/289 (53%), Positives = 199/289 (68%), Gaps = 7/289 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q EVV VL L + PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y+ R+LELNASDDRGI V+R K+K FA SG Q G PCPP+KI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIIILDEADSMTE 129
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M +R+ +IC++
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKE 189
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL 271
E + D +AL TL S GD+RRAIT LQ ARL G I ++D++ V+GV+P+ ++ L
Sbjct: 190 EELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGS-IISSKDLISVSGVVPQHVVQAL 248
Query: 272 L---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
K F K + ++I E Y +Q+ Q D+V+ A +SD+QKA
Sbjct: 249 FAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEA-DISDEQKA 296
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 83/135 (61%), Gaps = 5/135 (3%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
+AL TL S GD+RRAIT LQ ARL G I ++D++ V+GV+P ++ L K
Sbjct: 197 EALSTLSSISQGDLRRAITYLQGAARLFGS-IISSKDLISVSGVVPQHVVQALFAACKSG 255
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F K + ++I E Y +Q+ Q D+V+ A +SD+QKA I ++LAE + L DGA
Sbjct: 256 DFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEAD-ISDEQKARICKRLAEADKCLVDGAD 314
Query: 437 EYIQILDLGSIVIKA 451
EY+Q+LD+ S ++A
Sbjct: 315 EYLQLLDVASNAMRA 329
>gi|255558610|ref|XP_002520330.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223540549|gb|EEF42116.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 342
Score = 309 bits (791), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 153/289 (52%), Positives = 199/289 (68%), Gaps = 6/289 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q+EVV VL L ++ PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y+ R+LELNASDDRGI V+R K+K FA SG G PCPP+KI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSGQRAGGYPCPPYKIIILDEADSMTE 129
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME +K TRF +CNY+S II+PL SRC+KFRFKPL+E M +R+ +IC +
Sbjct: 130 DAQNALRRTMETYSKVTRFFFLCNYISRIIEPLASRCAKFRFKPLSEEIMSSRVLHICRE 189
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL 271
E + D +AL TL S GD+RRAIT LQ ARL G I ++D++ V+GVIP+ + L
Sbjct: 190 EGLNLDAEALSTLSYVSQGDLRRAITYLQGAARLYGST-ISSKDLISVSGVIPQEAVGAL 248
Query: 272 L---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
+ F + K + ++I E Y +Q+ Q ++V+ A +SD+QKA
Sbjct: 249 YAACRSGDFDMANKEVNNIIAEGYPVSQMLVQLLEVVVEADDISDEQKA 297
Score = 92.0 bits (227), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 4/135 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
+AL TL S GD+RRAIT LQ ARL G I ++D++ V+GVIP + L +
Sbjct: 197 EALSTLSYVSQGDLRRAITYLQGAARLYGST-ISSKDLISVSGVIPQEAVGALYAACRSG 255
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F + K + ++I E Y +Q+ Q ++V+ A +SD+QKA I + L + L DGA
Sbjct: 256 DFDMANKEVNNIIAEGYPVSQMLVQLLEVVVEADDISDEQKAQICKSLGAADKCLVDGAD 315
Query: 437 EYIQILDLGSIVIKA 451
EY+Q+LD+ S ++A
Sbjct: 316 EYLQLLDVASNTMRA 330
>gi|391326181|ref|XP_003737599.1| PREDICTED: replication factor C subunit 4-like [Metaseiulus
occidentalis]
Length = 320
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 161/317 (50%), Positives = 209/317 (65%), Gaps = 12/317 (3%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K +PWVEKYRP+T+DDV Q EVVSVLKKCL DLPH LF+GPPGTGKTST++A L
Sbjct: 6 KDLPWVEKYRPRTVDDVASQDEVVSVLKKCLQSGDLPHLLFFGPPGTGKTSTILALARDL 65
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+G+ +R+++LELNASD+RGI VIR+KVK F+Q TA NQ GK ++IVILDEADSMT
Sbjct: 66 YGNEFRQKVLELNASDERGISVIREKVKNFSQMTA---NQ-GK--IRYRIVILDEADSMT 119
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTMEK TK+TRFCLICNYV+ II PL SRCSKFRF+PL + ++ +L IC
Sbjct: 120 RDAQTALRRTMEKYTKTTRFCLICNYVTKIIPPLNSRCSKFRFRPLPTDVLVNKLDEICT 179
Query: 211 QESVMCDFKA---LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW 267
+E+V +F+ L+ L+E + GDMRRA+T LQS R+ E I ED+ + GVIP
Sbjct: 180 KENV--NFRGSDDLKFLIELAEGDMRRAVTLLQSAHRI-SAEKITREDIRNIAGVIPDNV 236
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVE 327
+E++ L K + D + E YS QL Q +++ + D ++A +VE
Sbjct: 237 VEQIYTEPVLDRLTKRMRDFVREGYSGDQLLTQLLQMIIADERIEDTKRAALLEKLAIVE 296
Query: 328 TSGGDMRRAITCLQSCA 344
D + LQ A
Sbjct: 297 HRMKDGASELISLQDLA 313
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 77/131 (58%), Gaps = 1/131 (0%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVL 381
L+ L+E + GDMRRA+T LQS R+ E I ED+ + GVIP+ +E++ L
Sbjct: 191 LKFLIELAEGDMRRAVTLLQSAHRI-SAEKITREDIRNIAGVIPDNVVEQIYTEPVLDRL 249
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
K + D + E YS QL Q ++++ + D ++A +LEKLA R++DGASE I +
Sbjct: 250 TKRMRDFVREGYSGDQLLTQLLQMIIADERIEDTKRAALLEKLAIVEHRMKDGASELISL 309
Query: 442 LDLGSIVIKAN 452
DL + ++ ++
Sbjct: 310 QDLAATIVSSH 320
>gi|426200510|gb|EKV50434.1| hypothetical protein AGABI2DRAFT_200125 [Agaricus bisporus var.
bisporus H97]
Length = 349
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 154/293 (52%), Positives = 202/293 (68%), Gaps = 14/293 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTI+DV Q+ ++VL+K L+ +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 26 PWVEKYRPKTIEDVSAQEHTIAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT--ASGFNQDGK--PCPPFKIVILDEADS 148
D ++ R+LELNASD+RGI ++R+K+K FA+QT A DGK PCPP+KI+ILDEADS
Sbjct: 86 DNFKNRVLELNASDERGISIVREKIKNFARQTPRAQAVASDGKTYPCPPYKIIILDEADS 145
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR ME + TRFCL+CNYV+ II+PL SRCSKFRF PL + +RL YI
Sbjct: 146 MTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSESATSRLTYI 205
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG----EGIVNEDVLEVTGVIP 264
++E + D ++ L+ S GD+RRAIT LQS +RL E + D+ E+ GV+P
Sbjct: 206 AKEEQIDVDTSVIDALITVSNGDLRRAITYLQSASRLSSSSESPENLRPYDIQEIAGVVP 265
Query: 265 KPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
+ K +F ++K ++ +I E YSATQ+ Q HDIV L L+ KQK+
Sbjct: 266 DTF-----KKSNFTAIQKNVKAIIREGYSATQILIQLHDIVALHPVLNSKQKS 313
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 76/134 (56%), Gaps = 9/134 (6%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGG----EGIVNEDVLEVTGVIPNPWIEKLLKVDS 377
++ L+ S GD+RRAIT LQS +RL E + D+ E+ GV+P+ + K +
Sbjct: 218 IDALITVSNGDLRRAITYLQSASRLSSSSESPENLRPYDIQEIAGVVPDTF-----KKSN 272
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
F ++K ++ +I E YSATQ+ Q HDIV L+ KQK+ AE + L DG+ E
Sbjct: 273 FTAIQKNVKAIIREGYSATQILIQLHDIVALHPVLNSKQKSECALVFAEADKALCDGSDE 332
Query: 438 YIQILDLGSIVIKA 451
+ +L++ + V KA
Sbjct: 333 ELWVLEIATRVNKA 346
>gi|358054157|dbj|GAA99693.1| hypothetical protein E5Q_06396 [Mixia osmundae IAM 14324]
Length = 446
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 170/371 (45%), Positives = 223/371 (60%), Gaps = 49/371 (13%)
Query: 23 STSGKTRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPG 76
S R +PV PWVEKYRPKTIDD+ Q+ V VL+K L A+LPH LFYGPPG
Sbjct: 77 SNGAVERKRPVLAAQAQPWVEKYRPKTIDDISAQENTVRVLRKSLENANLPHMLFYGPPG 136
Query: 77 TGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
TGKTST++A QLFG + +R R+LELNASD+RGI V+R+K+K FA+ S D PC
Sbjct: 137 TGKTSTILALAKQLFGPEAFRTRVLELNASDERGITVVREKIKNFAKIAISPAVGD-YPC 195
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
PP+KI+ILDEADSMT AQ+ALRR ME +K TRFCLICNYV+ II+P+TSRCSKFRFKP
Sbjct: 196 PPYKIIILDEADSMTQDAQSALRRIMENYSKITRFCLICNYVTRIIEPITSRCSKFRFKP 255
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE- 254
L RL+Y+C++E V C ++++ L+ S GD+RRAIT LQS +RL G + V+
Sbjct: 256 LDTTNTQKRLEYVCQKEEVQCGEESVQALIRCSEGDLRRAITYLQSASRLYGKDKPVDPV 315
Query: 255 DVLEVTGVIPKPWIEK-----------------------LLKVD--------SFQVLEKY 283
+ E+ GV+P P I L++VD F +
Sbjct: 316 SIQEIAGVVPDPVINSLARDLGVDVPESAAEAKAGEDNDLMQVDPKKPNKTGGFDAVNAA 375
Query: 284 IEDLILEAYSATQLFDQFHDIVMLASSLSDKQK-----ALFKALETLVETSGGDMRRAIT 338
+ ++ + YSATQL Q HD+ + LS + K AL +A + L T G D I
Sbjct: 376 VTRVVRQGYSATQLLSQLHDVCIFNVLLSKRAKSAIAMALGEADKCL--TDGADEHLQI- 432
Query: 339 CLQSCARLKGG 349
L +C R++
Sbjct: 433 -LNTCLRIRAA 442
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 77/156 (49%), Gaps = 32/156 (20%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE-DVLEVTGVIPNPWIEKL------ 372
++++ L+ S GD+RRAIT LQS +RL G + V+ + E+ GV+P+P I L
Sbjct: 279 ESVQALIRCSEGDLRRAITYLQSASRLYGKDKPVDPVSIQEIAGVVPDPVINSLARDLGV 338
Query: 373 -----------------LKVD--------SFQVLEKYIEDLILEAYSATQLFDQFHDIVM 407
++VD F + + ++ + YSATQL Q HD+ +
Sbjct: 339 DVPESAAEAKAGEDNDLMQVDPKKPNKTGGFDAVNAAVTRVVRQGYSATQLLSQLHDVCI 398
Query: 408 SASSLSDKQKALILEKLAECNARLQDGASEYIQILD 443
LS + K+ I L E + L DGA E++QIL+
Sbjct: 399 FNVLLSKRAKSAIAMALGEADKCLTDGADEHLQILN 434
>gi|334182754|ref|NP_001185060.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192020|gb|AEE30141.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 332
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 162/300 (54%), Positives = 198/300 (66%), Gaps = 14/300 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPK + DV Q+EVV VL L AD PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFG- 68
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+LELNASDDRGI V+R K+K FA S Q G PCP FKI+ILDEADSMT
Sbjct: 69 -----VLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTED 123
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M R+ +IC +E
Sbjct: 124 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEE 183
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
+ D +AL TL S GD+RRAIT LQS RL G I + D+L V+GV+P + KL
Sbjct: 184 GLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGST-ITSTDLLNVSGVVPLEVVNKLF 242
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLA-SSLSDKQKALFKALETLVET 328
K F + K +++++ E Y A+Q+ +Q DIV A S ++D QKA K + L ET
Sbjct: 243 TACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKA--KICKCLAET 300
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 84/136 (61%), Gaps = 5/136 (3%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
+AL TL S GD+RRAIT LQS RL G I + D+L V+GV+P + KL K
Sbjct: 190 EALSTLSSISQGDLRRAITYLQSATRLFGST-ITSTDLLNVSGVVPLEVVNKLFTACKSG 248
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASS-LSDKQKALILEKLAECNARLQDGA 435
F + K +++++ E Y A+Q+ +Q DIV A S ++D QKA I + LAE + RL DGA
Sbjct: 249 DFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDKRLVDGA 308
Query: 436 SEYIQILDLGSIVIKA 451
EY+Q+LD+ S I A
Sbjct: 309 DEYLQLLDVASSTICA 324
>gi|409046196|gb|EKM55676.1| hypothetical protein PHACADRAFT_144345 [Phanerochaete carnosa
HHB-10118-sp]
Length = 368
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 152/310 (49%), Positives = 205/310 (66%), Gaps = 26/310 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTIDDV Q+ V+VL++ L+ +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 23 PWVEKYRPKTIDDVSAQEHTVAVLRRTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGP 82
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT--ASGFNQDGK--PCPPFKIVILDEADS 148
D +R R+LELNASD+RGI ++R+K+K FA+QT A + D K PCPP+KI+ILDEADS
Sbjct: 83 DNFRSRVLELNASDERGISIVREKIKDFARQTPRAQAASSDDKTYPCPPYKIIILDEADS 142
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQAALRR ME + TRFCL+CNYV+ II+PL SRCSKFRFKPL + RL I
Sbjct: 143 MTQDAQAALRRIMENYVRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNASTSARLAAI 202
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTGVIP 264
E++ ++TL+ TS GD+RR+IT LQS +RL I + D+ E+ GV+P
Sbjct: 203 ASAENIHIPDSVIDTLINTSHGDLRRSITYLQSASRLANSTDPPAPITSADIQEIAGVVP 262
Query: 265 KPWIEKL----------LKVD-------SFQVLEKYIEDLILEAYSATQLFDQFHDIVML 307
++ + VD F +++ +++++ E YSA QL Q HD+++
Sbjct: 263 DEAVQNFAAALGIEGDTMDVDGTTDRRKGFDQIQRKVKEIVREGYSAAQLLTQLHDLIIE 322
Query: 308 ASSLSDKQKA 317
+L+ +QKA
Sbjct: 323 HPTLTARQKA 332
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 84/151 (55%), Gaps = 21/151 (13%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTGVIPNPWIEKL----- 372
++TL+ TS GD+RR+IT LQS +RL I + D+ E+ GV+P+ ++
Sbjct: 215 IDTLINTSHGDLRRSITYLQSASRLANSTDPPAPITSADIQEIAGVVPDEAVQNFAAALG 274
Query: 373 -----LKVDS-------FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALI 420
+ VD F +++ +++++ E YSA QL Q HD+++ +L+ +QKA
Sbjct: 275 IEGDTMDVDGTTDRRKGFDQIQRKVKEIVREGYSAAQLLTQLHDLIIEHPTLTARQKAQS 334
Query: 421 LEKLAECNARLQDGASEYIQILDLGSIVIKA 451
LAE + L DGA E +QIL++ +V KA
Sbjct: 335 ALALAEADKALCDGADEELQILEVALLVNKA 365
>gi|242042039|ref|XP_002468414.1| hypothetical protein SORBIDRAFT_01g045530 [Sorghum bicolor]
gi|241922268|gb|EER95412.1| hypothetical protein SORBIDRAFT_01g045530 [Sorghum bicolor]
Length = 339
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 154/288 (53%), Positives = 200/288 (69%), Gaps = 5/288 (1%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRP+ + DV Q+EV+ VL L ADLPH LFYGPPGTGKT+T +A +QL+G
Sbjct: 10 PWVEKYRPRQVKDVAHQEEVIRVLTNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++Y+ R+LELNASDDRGI V+R K+K FA + G PCPP+KI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTARKAGYPCPPYKIIILDEADSMTED 129
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M +R+ +IC +E
Sbjct: 130 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRIMHICNEE 189
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
+ D +AL TL S GD+RRAIT LQS ARL G + + D++ V+GVIP+ ++ LL
Sbjct: 190 GLNLDAQALSTLSAISQGDLRRAITYLQSAARL-FGSSLSSSDLISVSGVIPEDVVKSLL 248
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
K F V K + ++I + Y +QL QF D+++ A + D QKA
Sbjct: 249 AACKSGEFDVANKEVSNIIADGYPVSQLMAQFLDVIVSADDIQDDQKA 296
Score = 95.5 bits (236), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 84/135 (62%), Gaps = 4/135 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
+AL TL S GD+RRAIT LQS ARL G + + D++ V+GVIP ++ LL K
Sbjct: 196 QALSTLSAISQGDLRRAITYLQSAARL-FGSSLSSSDLISVSGVIPEDVVKSLLAACKSG 254
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F V K + ++I + Y +QL QF D+++SA + D QKA I +KL E + L DGA
Sbjct: 255 EFDVANKEVSNIIADGYPVSQLMAQFLDVIVSADDIQDDQKARICKKLGETDKCLVDGAD 314
Query: 437 EYIQILDLGSIVIKA 451
EY+Q+LD+ S I+A
Sbjct: 315 EYLQLLDVASETIRA 329
>gi|393245398|gb|EJD52908.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 376
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 153/316 (48%), Positives = 208/316 (65%), Gaps = 32/316 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTI+DV Q+ V+VL+K L+ +LPH LFYGPPGTGKTST++A QL+G
Sbjct: 24 PWVEKYRPKTIEDVTAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLYGP 83
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT--ASGFNQDGK--PCPPFKIVILDEADS 148
D +R R+LELNASD+RGI ++R+K+K FA+QT A+ + DG+ PCPP+KI+ILDEADS
Sbjct: 84 DNFRTRVLELNASDERGITIVREKIKDFARQTPRANVASSDGQTYPCPPYKIIILDEADS 143
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQAALRR ME + TRFCL+CNYV+ II+PL SRCSKFRFKPL ++ RL+YI
Sbjct: 144 MTQDAQAALRRIMENYARITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSSTHGRLEYI 203
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWI 268
+QE V +++L+ SGGD+RR+IT LQ+ +RL + I D+ E+ GV+P +
Sbjct: 204 AQQEGVNISQDTIKSLIACSGGDLRRSITYLQTASRLANAQPISPRDIQEIAGVVPDVVV 263
Query: 269 E---KLLKVDS------------------------FQVLEKYIEDLILEAYSATQLFDQF 301
+ L VD+ F + K + L+ E YS QL Q
Sbjct: 264 NDFARTLGVDTRYGPTAKADEDSMSVDASAVPDKGFMPVRKKVAALMREGYSGAQLLTQL 323
Query: 302 HDIVMLASSLSDKQKA 317
HD+++ +++ KQK+
Sbjct: 324 HDVIIENDNINSKQKS 339
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 27/151 (17%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIE---KLLKVDS- 377
+++L+ SGGD+RR+IT LQ+ +RL + I D+ E+ GV+P+ + + L VD+
Sbjct: 216 IKSLIACSGGDLRRSITYLQTASRLANAQPISPRDIQEIAGVVPDVVVNDFARTLGVDTR 275
Query: 378 -----------------------FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSD 414
F + K + L+ E YS QL Q HD+++ +++
Sbjct: 276 YGPTAKADEDSMSVDASAVPDKGFMPVRKKVAALMREGYSGAQLLTQLHDVIIENDNINS 335
Query: 415 KQKALILEKLAECNARLQDGASEYIQILDLG 445
KQK+ AE + L DGA E + IL++
Sbjct: 336 KQKSKCALVFAEADKALCDGADEELWILEVA 366
>gi|356515927|ref|XP_003526648.1| PREDICTED: replication factor C subunit 4-like isoform 3 [Glycine
max]
Length = 335
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 158/289 (54%), Positives = 196/289 (67%), Gaps = 13/289 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPK + DV Q EVV VL L PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFG- 68
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ--DGKPCPPFKIVILDEADSMTH 151
+LELNASDDRGI V+R K+K FA A G NQ +G PCPPFKI++LDEADSMT
Sbjct: 69 -----VLELNASDDRGINVVRTKIKDFAA-VAVGTNQCKNGYPCPPFKIIVLDEADSMTE 122
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME +K TRF ICNYVS II+PL SRC+KFRFKPL+E M +R+ YI ++
Sbjct: 123 DAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQE 182
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL 271
E + D +AL TL S GD+RRAIT LQS ARL G I +E+++ V+GV+P +E L
Sbjct: 183 EGLCLDAEALSTLSFISHGDLRRAITYLQSAARLFGS-SISSENLISVSGVVPAKVVEAL 241
Query: 272 LKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
LK +F + K + + I E Y A+Q+ Q + ++ + LSD+QKA
Sbjct: 242 LKACKSGNFDLANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKA 290
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 85/135 (62%), Gaps = 4/135 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+AL TL S GD+RRAIT LQS ARL G I +E+++ V+GV+P +E LLK
Sbjct: 190 EALSTLSFISHGDLRRAITYLQSAARLFGS-SISSENLISVSGVVPAKVVEALLKACKSG 248
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+F + K + + I E Y A+Q+ Q + ++ + LSD+QKA I +KL E + L DGA
Sbjct: 249 NFDLANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARISKKLGEADKCLVDGAD 308
Query: 437 EYIQILDLGSIVIKA 451
EY+Q+LD+ S IKA
Sbjct: 309 EYLQLLDVVSNTIKA 323
>gi|392573304|gb|EIW66444.1| hypothetical protein TREMEDRAFT_74703 [Tremella mesenterica DSM
1558]
Length = 490
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 152/307 (49%), Positives = 208/307 (67%), Gaps = 23/307 (7%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTIDDV Q+ V+VL+K L+ +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 148 PWVEKYRPKTIDDVSSQENTVAVLRKALASTNLPHMLFYGPPGTGKTSTILALARQLFGP 207
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTAS--GFNQDGK--PCPPFKIVILDEADS 148
D++R R+LELNASD+RGI V+R+K+KTFA++T + DGK PCPPFK++ILDEADS
Sbjct: 208 DLFRSRVLELNASDERGITVVREKIKTFARETPRHVSLSSDGKTYPCPPFKLIILDEADS 267
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MTH AQ+ALRR ME ++ TRFCL+CNYV+ II+PL SRCSKFRFKPLA+ + R++ I
Sbjct: 268 MTHDAQSALRRIMETYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLAQGSSQARMEMI 327
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTGVIP 264
+ E V + L+ ++E +GGD+R+AIT LQ+ RL G I + E++GV+P
Sbjct: 328 VKAEGVDIEDGVLDRILELAGGDLRKAITFLQTAQRLHGATSPPTPISAMSIHEISGVVP 387
Query: 265 KPWIEKLLK---VD-----------SFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASS 310
I LL+ VD +F + ++ + E +SA Q+ +Q HD ++ +
Sbjct: 388 DTTIHSLLRSMGVDPFSGIDLSIRSTFDTVRTAVKSISREGWSAGQVLEQLHDALIPIPT 447
Query: 311 LSDKQKA 317
+ QK+
Sbjct: 448 IPAMQKS 454
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 18/140 (12%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTGVIPNPWIEKLLK--- 374
L+ ++E +GGD+R+AIT LQ+ RL G I + E++GV+P+ I LL+
Sbjct: 340 LDRILELAGGDLRKAITFLQTAQRLHGATSPPTPISAMSIHEISGVVPDTTIHSLLRSMG 399
Query: 375 VD-----------SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 423
VD +F + ++ + E +SA Q+ +Q HD ++ ++ QK+
Sbjct: 400 VDPFSGIDLSIRSTFDTVRTAVKSISREGWSAGQVLEQLHDALIPIPTIPAMQKSQAALA 459
Query: 424 LAECNARLQDGASEYIQILD 443
+AEC+ L +G E +Q+LD
Sbjct: 460 IAECDKGLCEGGDEELQLLD 479
>gi|242082974|ref|XP_002441912.1| hypothetical protein SORBIDRAFT_08g004780 [Sorghum bicolor]
gi|241942605|gb|EES15750.1| hypothetical protein SORBIDRAFT_08g004780 [Sorghum bicolor]
Length = 339
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 154/288 (53%), Positives = 199/288 (69%), Gaps = 5/288 (1%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRP+ + DV Q+EV+ VL L ADLPH LFYGPPGTGKT+T +A +QL+G
Sbjct: 10 PWVEKYRPRQVKDVAHQEEVIRVLTNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++Y+ R+LELNASDDRGI V+R K+K FA + G PCPP+KI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTARKAGYPCPPYKIIILDEADSMTED 129
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M R+ +IC +E
Sbjct: 130 AQNALRRTMETYSKVTRFFFICNYISRIIEPLVSRCAKFRFKPLSEEVMSNRIMHICNEE 189
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
+ D +AL TL S GD+RRAIT LQS ARL G I + D++ V+GVIP+ ++ LL
Sbjct: 190 GLNLDAQALSTLSAISQGDLRRAITYLQSAARL-FGSSISSSDLISVSGVIPEDVVKSLL 248
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
+ F V K + ++I + Y +QL QF D+++ A + D QKA
Sbjct: 249 AACRSGEFDVANKEVSNIIADGYPVSQLMAQFLDVIVGADDIPDDQKA 296
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 83/135 (61%), Gaps = 4/135 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
+AL TL S GD+RRAIT LQS ARL G I + D++ V+GVIP ++ LL +
Sbjct: 196 QALSTLSAISQGDLRRAITYLQSAARL-FGSSISSSDLISVSGVIPEDVVKSLLAACRSG 254
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F V K + ++I + Y +QL QF D+++ A + D QKA I +KL E + L DGA
Sbjct: 255 EFDVANKEVSNIIADGYPVSQLMAQFLDVIVGADDIPDDQKARICKKLGETDKCLVDGAD 314
Query: 437 EYIQILDLGSIVIKA 451
EY+Q+LD+ S I+A
Sbjct: 315 EYLQLLDVASETIRA 329
>gi|224084964|ref|XP_002307456.1| predicted protein [Populus trichocarpa]
gi|222856905|gb|EEE94452.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 157/296 (53%), Positives = 198/296 (66%), Gaps = 7/296 (2%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
WVEKYRPK I DV Q EVV VL L A+ PH LFYGPPGTGKT+T +A HQL+G +
Sbjct: 11 WVEKYRPKQIKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLYGPE 70
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+Y+ R+LELNASDDRGI V+R K+K FA SG Q PCPP+KI+ILDEADSMT
Sbjct: 71 LYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGQRQGVYPCPPYKIIILDEADSMTED 130
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL E M R+ +IC +E
Sbjct: 131 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLPEEIMSNRILHICNEE 190
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
+ D +AL TL S GD+RRAIT LQ ARL G I ++D++ V+G IP+ E +
Sbjct: 191 GLTLDTEALSTLSSVSQGDLRRAITYLQGAARLFGS-SISSKDLISVSGAIPREVTEAIY 249
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA-LFKALET 324
K F + K + D+I E Y +Q+ Q ++V+ +SD+QKA + K+L T
Sbjct: 250 AACKNGDFDLANKEVNDVIAEGYPVSQMLAQLFEVVVEVDDISDEQKARICKSLAT 305
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 79/135 (58%), Gaps = 4/135 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
+AL TL S GD+RRAIT LQ ARL G I ++D++ V+G IP E + K
Sbjct: 197 EALSTLSSVSQGDLRRAITYLQGAARLFGS-SISSKDLISVSGAIPREVTEAIYAACKNG 255
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F + K + D+I E Y +Q+ Q ++V+ +SD+QKA I + LA + L DGA
Sbjct: 256 DFDLANKEVNDVIAEGYPVSQMLAQLFEVVVEVDDISDEQKARICKSLATADKCLVDGAD 315
Query: 437 EYIQILDLGSIVIKA 451
EY+Q+LD+ S +++
Sbjct: 316 EYLQLLDVVSNTMRS 330
>gi|409082644|gb|EKM83002.1| hypothetical protein AGABI1DRAFT_69120 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 372
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 153/311 (49%), Positives = 201/311 (64%), Gaps = 27/311 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTI+DV Q+ V+VL+K L+ +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 26 PWVEKYRPKTIEDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT--ASGFNQDGK--PCPPFKIVILDEADS 148
D ++ R+LELNASD+RGI ++R+K+K FA+QT A DGK PCPP+KI+ILDEADS
Sbjct: 86 DNFKNRVLELNASDERGISIVREKIKNFARQTPRAQAVASDGKTYPCPPYKIIILDEADS 145
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR ME + TRFCL+CNYV+ II+PL SRCSKFRF PL + +RL YI
Sbjct: 146 MTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSESATSRLTYI 205
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQ----SCARLKGGEGIVNEDVLEVTGVIP 264
++E + D ++ L+ S GD+RRAIT LQ + + E + D+ E+ GV+P
Sbjct: 206 AKEEQIDVDTSVIDALITVSNGDLRRAITYLQSASRLSSSSESTENLRPYDIQEIAGVVP 265
Query: 265 KPWIEKL------------------LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
I + K +F ++K ++ +I E YSATQ+ Q HDIV
Sbjct: 266 DTVINQFARTIGIEIDDGDMNVDEEFKKSNFTAIQKNVKAIIREGYSATQILIQLHDIVA 325
Query: 307 LASSLSDKQKA 317
L L+ KQK+
Sbjct: 326 LHPVLNSKQKS 336
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 22/152 (14%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKG----GEGIVNEDVLEVTGVIPNPWIEKL----- 372
++ L+ S GD+RRAIT LQS +RL E + D+ E+ GV+P+ I +
Sbjct: 218 IDALITVSNGDLRRAITYLQSASRLSSSSESTENLRPYDIQEIAGVVPDTVINQFARTIG 277
Query: 373 -------------LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKAL 419
K +F ++K ++ +I E YSATQ+ Q HDIV L+ KQK+
Sbjct: 278 IEIDDGDMNVDEEFKKSNFTAIQKNVKAIIREGYSATQILIQLHDIVALHPVLNSKQKSE 337
Query: 420 ILEKLAECNARLQDGASEYIQILDLGSIVIKA 451
AE + L DG+ E + +L++ + V KA
Sbjct: 338 CALVFAEADKALCDGSDEELWVLEIATRVNKA 369
>gi|320169797|gb|EFW46696.1| replication factor C subunit 4 [Capsaspora owczarzaki ATCC 30864]
Length = 347
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 155/313 (49%), Positives = 206/313 (65%), Gaps = 14/313 (4%)
Query: 9 KLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH 68
+L + A +T+ ST+ PWVEKYRP+T+D+V Q EVV+VLKK L+ D PH
Sbjct: 6 QLNQGASRKRETATSTT-------TPWVEKYRPRTVDEVAFQDEVVAVLKKSLTSNDFPH 58
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG 127
LFYGPPGTGKTST++A Q+FG ++ + RILELNASD+RGI V+R+KVKT Q
Sbjct: 59 LLFYGPPGTGKTSTILAIARQMFGPELMKTRILELNASDERGISVVREKVKTLHQSLRLK 118
Query: 128 FNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSR 187
+ G PCPPFKI+ILDEADSMT AQ+ALRR ME +K+TRFCLICNYVS II+PL SR
Sbjct: 119 W---GYPCPPFKIIILDEADSMTADAQSALRRMMETYSKTTRFCLICNYVSRIIEPLASR 175
Query: 188 CSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG 247
C+KFRFKPL + +L I ++E + D A+ L SGGDMRRAIT +Q C RL G
Sbjct: 176 CAKFRFKPLDAGILTEKLTAIGDKEGLQIDASAINQLTAASGGDMRRAITLMQCCFRLNG 235
Query: 248 GEGIVNEDVLEVTGVIPKPWIEKLLK---VDSFQVLEKYIEDLILEAYSATQLFDQFHDI 304
+ I +DV+ GV+P I KL K SF+ ++ ++++ +SA Q+ Q +
Sbjct: 236 SDPITADDVVAAAGVVPDDMIRKLWKECASGSFEKVQAAVKEIEASGFSAEQVLSQAFEQ 295
Query: 305 VMLASSLSDKQKA 317
+ ++D QK+
Sbjct: 296 FLARPDMTDAQKS 308
Score = 85.1 bits (209), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDS 377
A+ L SGGDMRRAIT +Q C RL G + I +DV+ GV+P+ I KL K S
Sbjct: 208 AINQLTAASGGDMRRAITLMQCCFRLNGSDPITADDVVAAAGVVPDDMIRKLWKECASGS 267
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
F+ ++ ++++ +SA Q+ Q + ++ ++D QK+ I A + +L DGA E
Sbjct: 268 FEKVQAAVKEIEASGFSAEQVLSQAFEQFLARPDMTDAQKSAIALAFANSDRQLVDGADE 327
Query: 438 YIQILDLGS 446
+Q+L + S
Sbjct: 328 SLQLLSVFS 336
>gi|403416153|emb|CCM02853.1| predicted protein [Fibroporia radiculosa]
Length = 371
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 154/314 (49%), Positives = 205/314 (65%), Gaps = 30/314 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTIDD+ Q+ V+VL++ L+ +LPH LFYGPPG+GKTST++A QLFG
Sbjct: 23 PWVEKYRPKTIDDISAQEHTVAVLRRTLTSTNLPHMLFYGPPGSGKTSTILALSRQLFGP 82
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT--ASGFNQDGK--PCPPFKIVILDEADS 148
D +R R+LELNASD+RGI ++RDK+K FA+QT A + DGK PCPP+KI+ILDEADS
Sbjct: 83 DNFRSRVLELNASDERGIAIVRDKIKNFARQTPRAQAVSSDGKTYPCPPYKIIILDEADS 142
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR ME + TRFCL+CNYV+ II+PL SRCSKFRFKPL + +RL I
Sbjct: 143 MTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFKPLDSTSTSSRLSQI 202
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTGVIP 264
+E + + + TL+ TS GD+RR+IT LQS +RL I D+ E+ GV+P
Sbjct: 203 ALEEHISVTDEVVSTLINTSHGDLRRSITYLQSASRLAMSTNPPTEITPSDIQEIAGVVP 262
Query: 265 KPWIEKL-------------LKVD--------SFQVLEKYIEDLILEAYSATQLFDQFHD 303
I + VD F ++K ++++I + YSATQ+ Q HD
Sbjct: 263 DTVINDFAATLGVEVLVPNAMDVDIPATSRAKDFDGVKKKVKEIIRQGYSATQILSQLHD 322
Query: 304 IVMLASSLSDKQKA 317
+V+ +LS +QK+
Sbjct: 323 LVIEHPTLSARQKS 336
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 81/157 (51%), Gaps = 25/157 (15%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTGVIPNPWIEKL--- 372
+ + TL+ TS GD+RR+IT LQS +RL I D+ E+ GV+P+ I
Sbjct: 213 EVVSTLINTSHGDLRRSITYLQSASRLAMSTNPPTEITPSDIQEIAGVVPDTVINDFAAT 272
Query: 373 ----------LKVD--------SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSD 414
+ VD F ++K ++++I + YSATQ+ Q HD+V+ +LS
Sbjct: 273 LGVEVLVPNAMDVDIPATSRAKDFDGVKKKVKEIIRQGYSATQILSQLHDLVIEHPTLSA 332
Query: 415 KQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 451
+QK+ AE + L DGA E + IL++G V KA
Sbjct: 333 RQKSRCALVFAEADKALCDGADEELWILEVGLCVHKA 369
>gi|392595637|gb|EIW84960.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 369
Score = 304 bits (779), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 156/313 (49%), Positives = 204/313 (65%), Gaps = 29/313 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTID+V Q+ V+VL+K L +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 21 PWVEKYRPKTIDEVSAQEHAVAVLRKTLFSTNLPHMLFYGPPGTGKTSTILALARQLFGP 80
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT--ASGFNQDGK--PCPPFKIVILDEADS 148
D +R R+LELNASDDRGI ++R+K+K FA+QT A DGK PCPP+KI+ILDEADS
Sbjct: 81 DNFRNRVLELNASDDRGISIVREKIKNFARQTPRAQAVASDGKTYPCPPYKIIILDEADS 140
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR ME + TRFCL+CNYV+ II+PL SRCSKFRF PL ++ RL +I
Sbjct: 141 MTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSSSTSNRLSHI 200
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE----GIVNEDVLEVTGVIP 264
QE V + ++ L++TS GD+RR+IT LQS +RL I D+ E+ GV+P
Sbjct: 201 AAQEHVDVSPEVIQALIDTSSGDLRRSITYLQSASRLSASSEPPTPITARDIQEIAGVVP 260
Query: 265 KPWIEKL-----------LKVDS---------FQVLEKYIEDLILEAYSATQLFDQFHDI 304
+ + VDS F + K ++++I + YSA+Q+ Q HD+
Sbjct: 261 NGVMLDFACALGIEFSGDMDVDSDTDRGRKRDFDGIRKKVKEVIRQGYSASQILLQLHDL 320
Query: 305 VMLASSLSDKQKA 317
V+L +L +QKA
Sbjct: 321 VILHPTLPARQKA 333
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 24/148 (16%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGE----GIVNEDVLEVTGVIPNPWIEKL----- 372
++ L++TS GD+RR+IT LQS +RL I D+ E+ GV+PN +
Sbjct: 213 IQALIDTSSGDLRRSITYLQSASRLSASSEPPTPITARDIQEIAGVVPNGVMLDFACALG 272
Query: 373 ------LKVDS---------FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQK 417
+ VDS F + K ++++I + YSA+Q+ Q HD+V+ +L +QK
Sbjct: 273 IEFSGDMDVDSDTDRGRKRDFDGIRKKVKEVIRQGYSASQILLQLHDLVILHPTLPARQK 332
Query: 418 ALILEKLAECNARLQDGASEYIQILDLG 445
A +E + L DGA E + +L++G
Sbjct: 333 ARCALIFSEADKALCDGADEELWVLEIG 360
>gi|402225443|gb|EJU05504.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 370
Score = 303 bits (777), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 153/309 (49%), Positives = 199/309 (64%), Gaps = 25/309 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PW+EKYRPKT++++ Q+ V VLKK L A+LPH LFYGPPGTGKTST++A QLFG
Sbjct: 27 PWIEKYRPKTMEEISAQEHTVQVLKKTLGSANLPHMLFYGPPGTGKTSTILALARQLFGP 86
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD---GKPCPPFKIVILDEADSM 149
+++R R+LELNASD+RGI V+R+K+K FA+QT + + G PCPP+KI+ILDEADSM
Sbjct: 87 ELFRSRVLELNASDERGITVVREKIKNFARQTPRAADDEASKGYPCPPYKIIILDEADSM 146
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQAALRR ME K TRFCL+CNYV+ II+PL SRCSKFRF L ++ RL+YI
Sbjct: 147 TQDAQAALRRVMETYAKITRFCLVCNYVTRIIEPLASRCSKFRFHTLDASSNRARLEYIA 206
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE----DVLEVTGVIPK 265
E V + TL+ TS GD+RR+IT LQS RL E D+ E+ GVIP
Sbjct: 207 TAEHVSVTPAVISTLISTSEGDLRRSITYLQSAHRLSASTSPPTEIQPRDIQEIAGVIPN 266
Query: 266 PWIEKLLK-----VD------------SFQVLEKYIEDLILEAYSATQLFDQFHDIVMLA 308
+ + K VD F + +++L++ YSATQ+ Q HDI++L
Sbjct: 267 AVVNRFAKALGVEVDGDVDMDIDARKQGFDGVRNAVQELVMGGYSATQVLSQLHDIIILH 326
Query: 309 SSLSDKQKA 317
LS QK+
Sbjct: 327 PLLSGPQKS 335
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 77/150 (51%), Gaps = 21/150 (14%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNE----DVLEVTGVIPNPWIEKLLK--- 374
+ TL+ TS GD+RR+IT LQS RL E D+ E+ GVIPN + + K
Sbjct: 218 ISTLISTSEGDLRRSITYLQSAHRLSASTSPPTEIQPRDIQEIAGVIPNAVVNRFAKALG 277
Query: 375 ------VD--------SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALI 420
VD F + +++L++ YSATQ+ Q HDI++ LS QK+
Sbjct: 278 VEVDGDVDMDIDARKQGFDGVRNAVQELVMGGYSATQVLSQLHDIIILHPLLSGPQKSKC 337
Query: 421 LEKLAECNARLQDGASEYIQILDLGSIVIK 450
AE + +L DGA E +Q++D+G V K
Sbjct: 338 ALVFAEIDKKLSDGADEELQLVDMGLRVWK 367
>gi|339257864|ref|XP_003369118.1| replication factor C subunit 4 [Trichinella spiralis]
gi|316966678|gb|EFV51223.1| replication factor C subunit 4 [Trichinella spiralis]
Length = 357
Score = 303 bits (776), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 156/310 (50%), Positives = 203/310 (65%), Gaps = 30/310 (9%)
Query: 40 RPKTIDDVIEQQEVVSVLKKCLSGAD--------------------------LPHFLFYG 73
RPK +DD+ Q EVV+VLKK L+ D +P+ LFYG
Sbjct: 14 RPKIVDDIAYQDEVVAVLKKSLTSNDKLRLCLMILYFVEHLIRFANILDNYFIPNLLFYG 73
Query: 74 PPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
PPGTGKTS ++A C Q+FG ++YR+R+LELNASD+RGI VIRDKVK F+Q AS + G
Sbjct: 74 PPGTGKTSAILALCRQIFGSEIYRDRVLELNASDERGIDVIRDKVKLFSQFAASEITEGG 133
Query: 133 KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
K CPP K+VILDEADSMT AQAALRRTME+E+K+TRFCLICNY+SCII+P+TSRC+KFR
Sbjct: 134 KKCPPLKMVILDEADSMTKQAQAALRRTMERESKTTRFCLICNYISCIIEPITSRCAKFR 193
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
FKPL + RL+ ICE ESV D AL +L+ GD+RRAI LQS A K + IV
Sbjct: 194 FKPLTLEIQIERLRKICENESVSIDDAALSSLISFCDGDLRRAINTLQSAASFKDKKEIV 253
Query: 253 NEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLAS 309
D+ E+ ++P+ ++E+ + + S + +EK + L EAYSA Q Q HD ++
Sbjct: 254 QTDIEEICQIVPEEFVEQFIAICRKGSHENMEKLVLQLQREAYSAYQFIIQLHDKLIDDL 313
Query: 310 SLSDKQKALF 319
+SD +A F
Sbjct: 314 MVSDLARAKF 323
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 3/129 (2%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
AL +L+ GD+RRAI LQS A K + IV D+ E+ ++P ++E+ + + S
Sbjct: 221 ALSSLISFCDGDLRRAINTLQSAASFKDKKEIVQTDIEEICQIVPEEFVEQFIAICRKGS 280
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
+ +EK + L EAYSA Q Q HD ++ +SD +A L KLA C R+ GA E
Sbjct: 281 HENMEKLVLQLQREAYSAYQFIIQLHDKLIDDLMVSDLARAKFLSKLAVCENRILAGADE 340
Query: 438 YIQILDLGS 446
+Q++DLG+
Sbjct: 341 TLQLMDLGT 349
>gi|356509381|ref|XP_003523428.1| PREDICTED: replication factor C subunit 4-like isoform 2 [Glycine
max]
Length = 330
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 156/290 (53%), Positives = 197/290 (67%), Gaps = 20/290 (6%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q EV PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVC------------PHMLFYGPPGTGKTTTALAIAHQLFGP 57
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ--DGKPCPPFKIVILDEADSMT 150
++Y+ R+LELNASDDRGI V+R K+K FA A G NQ G PCPPFKI++LDEADSMT
Sbjct: 58 ELYKSRVLELNASDDRGINVVRTKIKDFAA-VAVGTNQRKSGYPCPPFKIIVLDEADSMT 116
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME +K TRF ICNYVS II+PL SRC+KFRFKPL+E M +R+ YI +
Sbjct: 117 EDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQ 176
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEK 270
+E + D +AL TL S GD+RRAIT LQS ARL G I +E+++ V+GV+P +E+
Sbjct: 177 EEGLCLDAEALSTLSSISHGDLRRAITYLQSAARL-FGSSISSENLISVSGVVPAKVVEE 235
Query: 271 LLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
LLK +F + K + + I E Y A+Q+ Q + ++ + LSD+QKA
Sbjct: 236 LLKACKSGNFDLANKEVNNFIAEGYPASQMLTQLFESIVEDNDLSDEQKA 285
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 86/135 (63%), Gaps = 4/135 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+AL TL S GD+RRAIT LQS ARL G I +E+++ V+GV+P +E+LLK
Sbjct: 185 EALSTLSSISHGDLRRAITYLQSAARLFGS-SISSENLISVSGVVPAKVVEELLKACKSG 243
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+F + K + + I E Y A+Q+ Q + ++ + LSD+QKA I +KL E + L DGA
Sbjct: 244 NFDLANKEVNNFIAEGYPASQMLTQLFESIVEDNDLSDEQKARISKKLGEADKCLVDGAD 303
Query: 437 EYIQILDLGSIVIKA 451
EY+Q+LD+ S +KA
Sbjct: 304 EYLQLLDVVSNTMKA 318
>gi|356515925|ref|XP_003526647.1| PREDICTED: replication factor C subunit 4-like isoform 2 [Glycine
max]
Length = 330
Score = 302 bits (774), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 156/290 (53%), Positives = 197/290 (67%), Gaps = 20/290 (6%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q EV PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVC------------PHMLFYGPPGTGKTTTALAIAHQLFGP 57
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ--DGKPCPPFKIVILDEADSMT 150
++Y+ R+LELNASDDRGI V+R K+K FA A G NQ +G PCPPFKI++LDEADSMT
Sbjct: 58 ELYKSRVLELNASDDRGINVVRTKIKDFAA-VAVGTNQCKNGYPCPPFKIIVLDEADSMT 116
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME +K TRF ICNYVS II+PL SRC+KFRFKPL+E M +R+ YI +
Sbjct: 117 EDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQ 176
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEK 270
+E + D +AL TL S GD+RRAIT LQS ARL G I +E+++ V+GV+P +E
Sbjct: 177 EEGLCLDAEALSTLSFISHGDLRRAITYLQSAARLFGS-SISSENLISVSGVVPAKVVEA 235
Query: 271 LLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
LLK +F + K + + I E Y A+Q+ Q + ++ + LSD+QKA
Sbjct: 236 LLKACKSGNFDLANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKA 285
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 85/135 (62%), Gaps = 4/135 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+AL TL S GD+RRAIT LQS ARL G I +E+++ V+GV+P +E LLK
Sbjct: 185 EALSTLSFISHGDLRRAITYLQSAARLFGS-SISSENLISVSGVVPAKVVEALLKACKSG 243
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+F + K + + I E Y A+Q+ Q + ++ + LSD+QKA I +KL E + L DGA
Sbjct: 244 NFDLANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARISKKLGEADKCLVDGAD 303
Query: 437 EYIQILDLGSIVIKA 451
EY+Q+LD+ S IKA
Sbjct: 304 EYLQLLDVVSNTIKA 318
>gi|281209849|gb|EFA84017.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 357
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 150/306 (49%), Positives = 207/306 (67%), Gaps = 8/306 (2%)
Query: 21 SVSTSGKTRNKPV-PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGK 79
S ST+ T +PV PWV KYRPKT+D+V Q EVV LK+ L +LPH LFYGPPGTGK
Sbjct: 2 SKSTNQNTPYRPVEPWVNKYRPKTVDEVSHQDEVVKALKRSLETGNLPHLLFYGPPGTGK 61
Query: 80 TSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ--DGKPCP 136
TST++A LFG ++Y++R+LELNASD+RGI+V+R K+K FA + S N +GKP
Sbjct: 62 TSTILAVAMDLFGPELYKDRVLELNASDERGIEVVRTKIKNFASFSVSQNNTLTNGKPAA 121
Query: 137 PFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPL 196
FK+++LDEADSMTH AQAALRR +E +K+TRFCL+CNY++ II+PL+SRC+KFRFK L
Sbjct: 122 AFKLIVLDEADSMTHDAQAALRRIIEYTSKTTRFCLLCNYITRIIEPLSSRCAKFRFKSL 181
Query: 197 AENTMLTRLQYICEQESV-MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255
+ M+ RL+YI ES+ + + + S GD+R+AIT LQS R G + ++
Sbjct: 182 NDTAMIERLRYIASSESMPPVKDEVYQAIHAVSDGDLRKAITYLQSSYRFYGSRELTPDN 241
Query: 256 VLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLS 312
+ ++G +P IE L+ K +S+ L+ ++ L+ + Y A+Q+ Q D V S S
Sbjct: 242 IYNISGTVPPKLIETLINTCKSNSYDKLQSNLQQLVTKGYPASQILVQIFDQVTNHKSFS 301
Query: 313 DKQKAL 318
DKQKAL
Sbjct: 302 DKQKAL 307
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 102/196 (52%), Gaps = 16/196 (8%)
Query: 268 IEKLLKVDSFQVLEKYIEDLI--LEAYSATQLFDQFHDIVML--------ASSLSDKQKA 317
IE K F +L YI +I L + A F +D M+ + S+ +
Sbjct: 146 IEYTSKTTRFCLLCNYITRIIEPLSSRCAKFRFKSLNDTAMIERLRYIASSESMPPVKDE 205
Query: 318 LFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---K 374
+++A+ + S GD+R+AIT LQS R G + +++ ++G +P IE L+ K
Sbjct: 206 VYQAIHAV---SDGDLRKAITYLQSSYRFYGSRELTPDNIYNISGTVPPKLIETLINTCK 262
Query: 375 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
+S+ L+ ++ L+ + Y A+Q+ Q D V + S SDKQKALI K+ + + L DG
Sbjct: 263 SNSYDKLQSNLQQLVTKGYPASQILVQIFDQVTNHKSFSDKQKALIAMKIGDVDRNLVDG 322
Query: 435 ASEYIQILDLGSIVIK 450
+ E++Q+ D S ++K
Sbjct: 323 SEEFLQLFDTVSFIMK 338
>gi|226492916|ref|NP_001148581.1| replication factor C subunit 2 [Zea mays]
gi|195620566|gb|ACG32113.1| replication factor C subunit 2 [Zea mays]
Length = 339
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 151/288 (52%), Positives = 198/288 (68%), Gaps = 5/288 (1%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRP+ + DV Q+EV+ VL L ADLPH LFYGPPGTGKT+T +A +QL+G
Sbjct: 10 PWVEKYRPRQVKDVAHQEEVIRVLNNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++Y+ R+LELNASDDRGI V+R K+K FA + G PCPP+KI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGTARKAGYPCPPYKIIILDEADSMTED 129
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRT E +K TRF ICNY+S II+PL SRC+KFRFKPL+E M +R+ +IC +E
Sbjct: 130 AQNALRRTTETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRIMHICNEE 189
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
+ + +A+ TL S GD+RRAIT LQS ARL G I + D++ V+GVIP+ ++ LL
Sbjct: 190 GLNLNAQAMSTLSVISQGDLRRAITYLQSAARL-FGSSISSSDLISVSGVIPEDVVKSLL 248
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
+ F V K + +I + Y +QL QF D+++ A + D QKA
Sbjct: 249 AACRSGEFDVANKEVSSIIADGYPVSQLMAQFLDVIVSADDIPDDQKA 296
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 83/135 (61%), Gaps = 4/135 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
+A+ TL S GD+RRAIT LQS ARL G I + D++ V+GVIP ++ LL +
Sbjct: 196 QAMSTLSVISQGDLRRAITYLQSAARL-FGSSISSSDLISVSGVIPEDVVKSLLAACRSG 254
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F V K + +I + Y +QL QF D+++SA + D QKA I +KL E + L DGA
Sbjct: 255 EFDVANKEVSSIIADGYPVSQLMAQFLDVIVSADDIPDDQKARICKKLGETDKCLVDGAD 314
Query: 437 EYIQILDLGSIVIKA 451
EY+Q+LD+ S I+A
Sbjct: 315 EYLQLLDVASETIRA 329
>gi|194700788|gb|ACF84478.1| unknown [Zea mays]
gi|194706416|gb|ACF87292.1| unknown [Zea mays]
gi|413916289|gb|AFW56221.1| replication factor C subunit 2 [Zea mays]
Length = 339
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 151/288 (52%), Positives = 198/288 (68%), Gaps = 5/288 (1%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRP+ + DV Q+EV+ VL L ADLPH LFYGPPGTGKT+T +A +QL+G
Sbjct: 10 PWVEKYRPRQVKDVAHQEEVIRVLNNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++Y+ R+LELNASDDRGI V+R K+K FA + G PCPP+KI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGTARKAGYPCPPYKIIILDEADSMTED 129
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRT E +K TRF ICNY+S II+PL SRC+KFRFKPL+E M +R+ +IC +E
Sbjct: 130 AQNALRRTTETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRIMHICNEE 189
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
+ + +A+ TL S GD+RRAIT LQS ARL G I + D++ V+GVIP+ ++ LL
Sbjct: 190 GLNLNAQAMSTLSVISQGDLRRAITYLQSAARL-FGSSISSSDLISVSGVIPEDVVKSLL 248
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
+ F V K + +I + Y +QL QF D+++ A + D QKA
Sbjct: 249 AACRSGEFDVANKEVSSIIADGYPVSQLMAQFLDVIVSADDIPDDQKA 296
Score = 91.3 bits (225), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 83/135 (61%), Gaps = 4/135 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
+A+ TL S GD+RRAIT LQS ARL G I + D++ V+GVIP ++ LL +
Sbjct: 196 QAMSTLSVISQGDLRRAITYLQSAARL-FGSSISSSDLISVSGVIPEDVVKSLLAACRSG 254
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F V K + +I + Y +QL QF D+++SA + D QKA I +KL E + L DGA
Sbjct: 255 EFDVANKEVSSIIADGYPVSQLMAQFLDVIVSADDIPDDQKARICKKLGETDKCLVDGAD 314
Query: 437 EYIQILDLGSIVIKA 451
EY+Q+LD+ S I++
Sbjct: 315 EYLQLLDVASETIRS 329
>gi|359492415|ref|XP_003634411.1| PREDICTED: replication factor C subunit 4 [Vitis vinifera]
Length = 334
Score = 300 bits (769), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 154/288 (53%), Positives = 194/288 (67%), Gaps = 12/288 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPK + DV Q EVV VL L + PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLFG- 68
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+LELNASDDRGI V+R K+K FA SG Q G PCPP+KI+ILDEADSMT
Sbjct: 69 -----VLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIIILDEADSMTED 123
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M +R+ +IC++E
Sbjct: 124 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKEE 183
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
+ D +AL TL S GD+RRAIT LQ ARL G I ++D++ V+GV+P+ ++ L
Sbjct: 184 ELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSI-ISSKDLISVSGVVPQHVVQALF 242
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
K F K + ++I E Y +Q+ Q D+V+ A +SD+QKA
Sbjct: 243 AACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEA-DISDEQKA 289
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 83/135 (61%), Gaps = 5/135 (3%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
+AL TL S GD+RRAIT LQ ARL G I ++D++ V+GV+P ++ L K
Sbjct: 190 EALSTLSSISQGDLRRAITYLQGAARLFGSI-ISSKDLISVSGVVPQHVVQALFAACKSG 248
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F K + ++I E Y +Q+ Q D+V+ A +SD+QKA I ++LAE + L DGA
Sbjct: 249 DFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEAD-ISDEQKARICKRLAEADKCLVDGAD 307
Query: 437 EYIQILDLGSIVIKA 451
EY+Q+LD+ S ++A
Sbjct: 308 EYLQLLDVASNAMRA 322
>gi|296421403|ref|XP_002840254.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636469|emb|CAZ84445.1| unnamed protein product [Tuber melanosporum]
Length = 372
Score = 300 bits (768), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 149/311 (47%), Positives = 208/311 (66%), Gaps = 17/311 (5%)
Query: 23 STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
ST K N+PVPWVEKYRPK ++DV Q +SVLK+ L ++LPH LFYGPPGTGKTST
Sbjct: 24 STKAKDPNRPVPWVEKYRPKNLNDVSAQDHTISVLKRTLQSSNLPHMLFYGPPGTGKTST 83
Query: 83 MIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ---QTASGFNQDGKPCPPF 138
++A +L+G ++ + R+LELNASD+RGI ++R+KVK FA+ TAS PCPP+
Sbjct: 84 VLALAKELYGPELMKSRVLELNASDERGISIVREKVKNFARITVSTASSTQSSNYPCPPY 143
Query: 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAE 198
KI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFKPL E
Sbjct: 144 KIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKPLDE 203
Query: 199 NTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG------GEGIV 252
RL+ I + E+V + ++ L++ S GD+R+AIT LQS ARL + I
Sbjct: 204 ENAKLRLEEIAKMENVEYEDGVIDALIKVSEGDLRKAITYLQSAARLHNPIIRPKPKKIT 263
Query: 253 NEDVLEVTGVIPKPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305
+ + E+ GVIP I+KLL+ ++ + + ++D++ + +SA Q+ Q ++ +
Sbjct: 264 VKSIQEIAGVIPDQTIDKLLEACELEKGKSAYSEISRLVQDIVADGWSAGQVVFQLYNKL 323
Query: 306 MLASSLSDKQK 316
+ ++ +QK
Sbjct: 324 VFNDEVTAEQK 334
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 80/137 (58%), Gaps = 13/137 (9%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGG------EGIVNEDVLEVTGVIPNPWIEKLLKV 375
++ L++ S GD+R+AIT LQS ARL + I + + E+ GVIP+ I+KLL+
Sbjct: 226 IDALIKVSEGDLRKAITYLQSAARLHNPIIRPKPKKITVKSIQEIAGVIPDQTIDKLLEA 285
Query: 376 -------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 428
++ + + ++D++ + +SA Q+ Q ++ ++ ++ +QK I+ +E +
Sbjct: 286 CELEKGKSAYSEISRLVQDIVADGWSAGQVVFQLYNKLVFNDEVTAEQKNDIVLIFSEVD 345
Query: 429 ARLQDGASEYIQILDLG 445
RL DG+ E++QILDL
Sbjct: 346 KRLVDGSDEHLQILDLA 362
>gi|290981375|ref|XP_002673406.1| predicted protein [Naegleria gruberi]
gi|284086989|gb|EFC40662.1| predicted protein [Naegleria gruberi]
Length = 345
Score = 300 bits (768), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 154/276 (55%), Positives = 193/276 (69%), Gaps = 10/276 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PW EKYRPKT+DDV+ Q+EVVS LKK L +LPH LFYGPPG GKTST A QLFG
Sbjct: 8 PWTEKYRPKTVDDVVHQEEVVSALKKSLEVGNLPHLLFYGPPGNGKTSTATAIAKQLFGP 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK---PCPPFKIVILDEADSM 149
++Y+ R+LELNASD+RGI VIR KVKTFAQ TA N GK PCPPFKI+ILDEADSM
Sbjct: 68 ELYKTRVLELNASDERGINVIRTKVKTFAQ-TAVSENPTGKGKYPCPPFKIIILDEADSM 126
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYVS II P+TSRC+KFRFKPL + + RLQYI
Sbjct: 127 TVDAQSALRRTMETYSNVTRFCLICNYVSRIIDPITSRCAKFRFKPLEYSLLKERLQYIA 186
Query: 210 EQESV-MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWI 268
QE + + D K L+T+V S GD+R+AIT LQS +R+ G I + E++G++P I
Sbjct: 187 NQEGITLKDEKVLDTIVGHSEGDLRKAITTLQSASRM-FGNAISQNHIAEISGLVPDEII 245
Query: 269 EKLLKVDS---FQVLEKYIEDLILEAYSATQLFDQF 301
E++L + V+ + +I + ++A Q+ Q
Sbjct: 246 EEILTLSQQTDLGVIRSGVNKIIKQGFAAYQIITQL 281
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 83/141 (58%), Gaps = 7/141 (4%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDS-- 377
K L+T+V S GD+R+AIT LQS +R+ G I + E++G++P+ IE++L +
Sbjct: 197 KVLDTIVGHSEGDLRKAITTLQSASRM-FGNAISQNHIAEISGLVPDEIIEEILTLSQQT 255
Query: 378 -FQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS---SLSDKQKALILEKLAECNARLQD 433
V+ + +I + ++A Q+ Q ++S + + D Q++ IL K++EC+ L D
Sbjct: 256 DLGVIRSGVNKIIKQGFAAYQIITQLGRYLLSEACCVKMDDIQRSKILLKISECDKCLID 315
Query: 434 GASEYIQILDLGSIVIKANKT 454
GA E++Q+L L S + K +T
Sbjct: 316 GADEFLQLLSLASYISKTLQT 336
>gi|392567387|gb|EIW60562.1| replication factor C [Trametes versicolor FP-101664 SS1]
Length = 379
Score = 300 bits (768), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 153/318 (48%), Positives = 200/318 (62%), Gaps = 34/318 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTI+DV Q+ V+VL+K L+ +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 25 PWVEKYRPKTIEDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGP 84
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT--ASGFNQDGK--PCPPFKIVILDEADS 148
+ +R R+LELNASD+RGI ++R+K+K FA+QT A + DG PCPP+KI+ILDEADS
Sbjct: 85 ENFRSRVLELNASDERGISIVREKIKNFARQTPRAQAVSADGTVYPCPPYKIIILDEADS 144
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQAALRR ME + TRFCL+CNYV+ II+PL SRCSKFRFKPL + R+ +
Sbjct: 145 MTQDAQAALRRIMELYARITRFCLVCNYVTRIIEPLASRCSKFRFKPLDPASTSARIAQV 204
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE----GIVNEDVLEVTGVIP 264
E+V + ++ L+ TS GD+RRAIT LQS +RL I DV E+ GV+P
Sbjct: 205 ASAENVPVTPETVDALISTSQGDLRRAITYLQSASRLALASTPPTSITARDVQEIAGVVP 264
Query: 265 KPWIEKL-------------------------LKVDSFQVLEKYIEDLILEAYSATQLFD 299
IE K F + + ++I E YSA+Q+
Sbjct: 265 DAVIEGFAAALGVERMGGDGMDVDLEVDEKGEFKAKGFDGVRAKVREIIREGYSASQIIS 324
Query: 300 QFHDIVMLASSLSDKQKA 317
Q HD V++ +LS +QK+
Sbjct: 325 QLHDYVIMHPTLSARQKS 342
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 75/159 (47%), Gaps = 29/159 (18%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGE----GIVNEDVLEVTGVIPNPWIEKL----- 372
++ L+ TS GD+RRAIT LQS +RL I DV E+ GV+P+ IE
Sbjct: 217 VDALISTSQGDLRRAITYLQSASRLALASTPPTSITARDVQEIAGVVPDAVIEGFAAALG 276
Query: 373 --------------------LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL 412
K F + + ++I E YSA+Q+ Q HD V+ +L
Sbjct: 277 VERMGGDGMDVDLEVDEKGEFKAKGFDGVRAKVREIIREGYSASQIISQLHDYVIMHPTL 336
Query: 413 SDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 451
S +QK+ AE + L DGA E + IL++G + +A
Sbjct: 337 SARQKSRAALVFAEADKALCDGADEELWILEVGLRIHRA 375
>gi|344229660|gb|EGV61545.1| P-loop containing nucleoside triphosphate hydrolase protein
[Candida tenuis ATCC 10573]
Length = 359
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 153/313 (48%), Positives = 204/313 (65%), Gaps = 29/313 (9%)
Query: 28 TRNKP--------VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGK 79
TRNK PWVEKYRPK++DDV Q V VLK+ L A+LPH LFYGPPGTGK
Sbjct: 9 TRNKAYEQEKIEHTPWVEKYRPKSLDDVASQDHTVKVLKRTLVSANLPHMLFYGPPGTGK 68
Query: 80 TSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG---KPC 135
TST++A L+G +++ R+LELNASD+RGI ++R K+K FA+ T S + + PC
Sbjct: 69 TSTILALAKSLYGPILFKSRVLELNASDERGISIVRQKIKNFARLTISNPSPEDLEKYPC 128
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
PP+KI+ILDEADSMT+ AQ+ALRRTME + TRFCL+CNY++ II PL SRCSKFRFKP
Sbjct: 129 PPYKIIILDEADSMTNDAQSALRRTMETYSGVTRFCLVCNYITRIIDPLASRCSKFRFKP 188
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255
L + L RLQYI E + + LE +++ S GD+RRAIT LQS RL ++ ED
Sbjct: 189 LNNSDALGRLQYIAGHEGIEAEEGTLEEVLKISNGDLRRAITYLQSATRLHSSLKLLEED 248
Query: 256 ------------VLEVTGVIPKPWIEKLLKV----DSFQVLEKYIEDLILEAYSATQLFD 299
+LEV GV+ I+K+L DS +++E+ +++L+ YSA Q+ D
Sbjct: 249 ISIGTNKITVDSILEVGGVVSDEIIDKILSTIESKDSKEIIEE-TRNVVLQGYSAQQVID 307
Query: 300 QFHDIVMLASSLS 312
Q HD +++ S S
Sbjct: 308 QLHDKLIMDDSRS 320
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 17/140 (12%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDV------------LEVTGVIPNPW 368
LE +++ S GD+RRAIT LQS RL ++ ED+ LEV GV+ +
Sbjct: 213 TLEEVLKISNGDLRRAITYLQSATRLHSSLKLLEEDISIGTNKITVDSILEVGGVVSDEI 272
Query: 369 IEKLLKV----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKL 424
I+K+L DS +++E+ +++L+ YSA Q+ DQ HD ++ S S K + + L
Sbjct: 273 IDKILSTIESKDSKEIIEE-TRNVVLQGYSAQQVIDQLHDKLIMDDSRSSIVKNHVSQLL 331
Query: 425 AECNARLQDGASEYIQILDL 444
+ RL G E+IQ+L+L
Sbjct: 332 FTTDKRLNSGTDEHIQLLNL 351
>gi|321264422|ref|XP_003196928.1| DNA replication factor (activator 1 subunit) [Cryptococcus gattii
WM276]
gi|317463406|gb|ADV25141.1| DNA replication factor (activator 1 subunit), putative
[Cryptococcus gattii WM276]
Length = 363
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 154/312 (49%), Positives = 204/312 (65%), Gaps = 30/312 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTIDDV Q V+VL+K L+ +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 19 PWVEKYRPKTIDDVSSQDNTVAVLRKALASTNLPHMLFYGPPGTGKTSTILALARQLFGP 78
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT---ASGFNQDGK--PCPPFKIVILDEAD 147
D++R R+LELNASD+RGI V+R+K+K+FA++T ASG + DGK PCPPFK++ILDEAD
Sbjct: 79 DLFRARVLELNASDERGISVVREKIKSFARETPRHASGVSSDGKEYPCPPFKLIILDEAD 138
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
SMT AQ+ALRR ME +K TRFCL+CNYV+ II+PL SRCSKFRFKPL + + R++
Sbjct: 139 SMTQDAQSALRRIMETYSKITRFCLVCNYVTRIIEPLASRCSKFRFKPLEQESTRARMEM 198
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG----EGIVNEDVLEVTGVI 263
I E E V D L ++E +GGD+R+AIT LQ+ RL + + E++GV+
Sbjct: 199 IAENEGVQTDPGVLSLILELAGGDLRKAITYLQTAQRLHSSIEPPTPVSALSIHEISGVV 258
Query: 264 PKPWIEKLLKV-----------------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
P+ I LL D ++ K +E E +S Q+ +Q HD ++
Sbjct: 259 PEDLITDLLAAMGADRQTGIDPSLARGFDGVKIAVKRVER---EGWSVGQVLEQIHDALI 315
Query: 307 LASSLSDKQKAL 318
S+ QK+L
Sbjct: 316 PIPSIPAVQKSL 327
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 24/143 (16%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGG----EGIVNEDVLEVTGVIPNPWIEKLLKV-- 375
L ++E +GGD+R+AIT LQ+ RL + + E++GV+P I LL
Sbjct: 212 LSLILELAGGDLRKAITYLQTAQRLHSSIEPPTPVSALSIHEISGVVPEDLITDLLAAMG 271
Query: 376 ---------------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALI 420
D ++ K +E E +S Q+ +Q HD ++ S+ QK+L
Sbjct: 272 ADRQTGIDPSLARGFDGVKIAVKRVER---EGWSVGQVLEQIHDALIPIPSIPAVQKSLA 328
Query: 421 LEKLAECNARLQDGASEYIQILD 443
+AEC+ L +G E +Q+LD
Sbjct: 329 GIAIAECDKGLCEGGDEELQLLD 351
>gi|388583076|gb|EIM23379.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 331
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 149/311 (47%), Positives = 209/311 (67%), Gaps = 16/311 (5%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRP+TI+DV Q + VLKK L A+LPH LFYGPPGTGKTST++A QLFG
Sbjct: 8 PWVEKYRPRTIEDVAAQDHTIRVLKKQLGNANLPHMLFYGPPGTGKTSTILALSRQLFGQ 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D+ + R+LELNASD+RGI V+R+K+K FA+Q P +KI+ILDEADSMT
Sbjct: 68 DLVKSRVLELNASDERGINVVREKIKNFAKQAPKA--STSASVPAYKIIILDEADSMTQD 125
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRRTME +KSTRFCL+CNYV+ II+P+ SRCSKFRFKPL E+ RL+YI ++E
Sbjct: 126 AQSALRRTMETYSKSTRFCLVCNYVTRIIEPVASRCSKFRFKPLDESDSKARLEYIAQEE 185
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVNEDVLEVTGVIPKPWIEK 270
++ + ++ L++ + GD+R+AIT LQS ARL I + + E+ G IP+ I+
Sbjct: 186 NIPLNEGVIDALIDNTHGDLRQAITYLQSAARLHQASNSAITVDTITEIAGTIPENIIDN 245
Query: 271 LLKV----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLV 326
+++V +F+ ++ I+ + L Y++ Q+ Q HD + +S+SD K+ KA+ ++
Sbjct: 246 IIQVCSNKKNFKEIQSTIKQIHLFGYASAQVLLQLHDKFIENTSISDTSKS--KAILSIA 303
Query: 327 E-----TSGGD 332
E T G D
Sbjct: 304 EADKALTDGAD 314
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 75/130 (57%), Gaps = 6/130 (4%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLK--GGEGIVNEDVLEVTGVIPNPWIEKLLKV---- 375
++ L++ + GD+R+AIT LQS ARL I + + E+ G IP I+ +++V
Sbjct: 194 IDALIDNTHGDLRQAITYLQSAARLHQASNSAITVDTITEIAGTIPENIIDNIIQVCSNK 253
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
+F+ ++ I+ + L Y++ Q+ Q HD + +S+SD K+ + +AE + L DGA
Sbjct: 254 KNFKEIQSTIKQIHLFGYASAQVLLQLHDKFIENTSISDTSKSKAILSIAEADKALTDGA 313
Query: 436 SEYIQILDLG 445
+ +Q+L+L
Sbjct: 314 DDELQLLNLA 323
>gi|30687479|ref|NP_849695.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192019|gb|AEE30140.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 327
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 158/301 (52%), Positives = 197/301 (65%), Gaps = 21/301 (6%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q+EV PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVC------------PHMLFYGPPGTGKTTTALAIAHQLFGP 57
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y+ R+LELNASDDRGI V+R K+K FA S Q G PCP FKI+ILDEADSMT
Sbjct: 58 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 117
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M R+ +IC +
Sbjct: 118 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 177
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL 271
E + D +AL TL S GD+RRAIT LQS RL G I + D+L V+GV+P + KL
Sbjct: 178 EGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGST-ITSTDLLNVSGVVPLEVVNKL 236
Query: 272 L---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLA-SSLSDKQKALFKALETLVE 327
K F + K +++++ E Y A+Q+ +Q DIV A S ++D QKA K + L E
Sbjct: 237 FTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKA--KICKCLAE 294
Query: 328 T 328
T
Sbjct: 295 T 295
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 84/136 (61%), Gaps = 5/136 (3%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
+AL TL S GD+RRAIT LQS RL G I + D+L V+GV+P + KL K
Sbjct: 185 EALSTLSSISQGDLRRAITYLQSATRLFGST-ITSTDLLNVSGVVPLEVVNKLFTACKSG 243
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASS-LSDKQKALILEKLAECNARLQDGA 435
F + K +++++ E Y A+Q+ +Q DIV A S ++D QKA I + LAE + RL DGA
Sbjct: 244 DFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDKRLVDGA 303
Query: 436 SEYIQILDLGSIVIKA 451
EY+Q+LD+ S I A
Sbjct: 304 DEYLQLLDVASSTICA 319
>gi|50424927|ref|XP_461055.1| DEHA2F16016p [Debaryomyces hansenii CBS767]
gi|49656724|emb|CAG89431.1| DEHA2F16016p [Debaryomyces hansenii CBS767]
Length = 368
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 160/347 (46%), Positives = 217/347 (62%), Gaps = 38/347 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +DDV Q V +LKK L A+LPH LFYGPPGTGKTST++A QL+G
Sbjct: 24 PWVEKYRPKNLDDVASQDHAVKILKKTLESANLPHMLFYGPPGTGKTSTILALAKQLYGP 83
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD---GKPCPPFKIVILDEADSM 149
+Y+ R+LELNASD+RGI ++R K+K FA+ T S +++ PCPP+KI+ILDEADSM
Sbjct: 84 HLYKSRVLELNASDERGISIVRQKIKNFARLTISNPSKEDLENYPCPPYKIIILDEADSM 143
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+ AQ+ALRRTME + TRFCLICNY++ II PL SRCSKFRF+ L + L RL+YI
Sbjct: 144 TNDAQSALRRTMENYSGVTRFCLICNYITRIIDPLASRCSKFRFRLLNNSNALNRLKYIV 203
Query: 210 EQESVMCDFK-ALETLVETSGGDMRRAITCLQSCARLKGG-------------------E 249
QE + D + LE ++ S GD+R+AIT LQS ARL
Sbjct: 204 GQEEIALDNEDVLEEVLNISNGDLRKAITYLQSAARLHASFNNRIDANGDIEMVDADTKS 263
Query: 250 GIVNEDVLEVTGVIPKPWIEKLL----KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305
I + V E+ GV+P+ +++++ +D+ +L+K IE+++L+ +SA Q+ DQ HD
Sbjct: 264 KITQDSVQEIAGVLPEASLDQIISAIESLDTRTILQK-IEEIVLQGWSAQQVVDQLHDKF 322
Query: 306 MLASSLSDKQKALFKALETLVET-----SGGDMRRAITCLQSCARLK 347
+L SL K K + L ET +G D I L C ++K
Sbjct: 323 ILNDSLESSTKN--KIAKILFETDRKLNNGTD--EHIQLLNLCLQIK 365
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 77/146 (52%), Gaps = 24/146 (16%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGG-------------------EGIVNEDVLEVTG 362
LE ++ S GD+R+AIT LQS ARL I + V E+ G
Sbjct: 216 LEEVLNISNGDLRKAITYLQSAARLHASFNNRIDANGDIEMVDADTKSKITQDSVQEIAG 275
Query: 363 VIPNPWIEKLLK----VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKA 418
V+P +++++ +D+ +L+K IE+++L+ +SA Q+ DQ HD + SL K
Sbjct: 276 VLPEASLDQIISAIESLDTRTILQK-IEEIVLQGWSAQQVVDQLHDKFILNDSLESSTKN 334
Query: 419 LILEKLAECNARLQDGASEYIQILDL 444
I + L E + +L +G E+IQ+L+L
Sbjct: 335 KIAKILFETDRKLNNGTDEHIQLLNL 360
>gi|430814613|emb|CCJ28174.1| unnamed protein product [Pneumocystis jirovecii]
Length = 967
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 159/373 (42%), Positives = 229/373 (61%), Gaps = 23/373 (6%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
+S K ++ + K K +PWVEKYRP+T+D V Q +SVLKK L +LPH LFYG P
Sbjct: 3 TSKKKQINLNNKDNEKMIPWVEKYRPQTLDQVAFQDHAISVLKKSLQSMNLPHLLFYGSP 62
Query: 76 GTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134
GTGKTST++A ++LFG ++ + R+LELNASD+RGI +IR+KVK FA+ S N
Sbjct: 63 GTGKTSTILALANELFGMELMKSRVLELNASDERGISIIREKVKNFARIAVS--NSSEHS 120
Query: 135 CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
CPP+KI+ILDEADSMT AQ+ALRRTME +K TRFCLICNY++ II PL SRCSKF+FK
Sbjct: 121 CPPYKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYITRIIGPLASRCSKFQFK 180
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE----- 249
PL+ + +L+YI E+V D +E L+E S GD+R+AIT LQS ARL E
Sbjct: 181 PLSFQHSMEKLKYIASCENVKYDKGVIEMLIEQSNGDLRKAITFLQSAARLVDSEPNKSS 240
Query: 250 -----GIVNEDVLEVTGVIPKPWIEKLLKV--------DSFQVLEKYIEDLILEAYSATQ 296
I E + E++G +P I+ LL + + ++++Y+ +++ E YSA Q
Sbjct: 241 LENTRSISVELISEISGTVPDHIIQHLLSICFSSKSTPSQYHLIDQYVSEIVAEGYSANQ 300
Query: 297 LFDQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 356
+ Q HD + +++ L ++ L +A E E + ++ +T L+ +G + ED
Sbjct: 301 VISQLHDSI-VSNELISAEQLLREAFER-QEPALQAPKQRLTDLEELHEFQGRKRKEFED 358
Query: 357 VLEVTGVIPNPWI 369
+ + W+
Sbjct: 359 AIRRNRLAVGQWV 371
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 62/113 (54%), Gaps = 18/113 (15%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGE----------GIVNEDVLEVTGVIPNPWIEK 371
+E L+E S GD+R+AIT LQS ARL E I E + E++G +P+ I+
Sbjct: 207 IEMLIEQSNGDLRKAITFLQSAARLVDSEPNKSSLENTRSISVELISEISGTVPDHIIQH 266
Query: 372 LLKV--------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQ 416
LL + + ++++Y+ +++ E YSA Q+ Q HD ++S +S +Q
Sbjct: 267 LLSICFSSKSTPSQYHLIDQYVSEIVAEGYSANQVISQLHDSIVSNELISAEQ 319
>gi|336367142|gb|EGN95487.1| hypothetical protein SERLA73DRAFT_60040 [Serpula lacrymans var.
lacrymans S7.3]
gi|336379860|gb|EGO21014.1| hypothetical protein SERLADRAFT_372826 [Serpula lacrymans var.
lacrymans S7.9]
Length = 372
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 154/313 (49%), Positives = 204/313 (65%), Gaps = 28/313 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTIDDV Q+ V+VL+K L+ +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 23 PWVEKYRPKTIDDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALSRQLFGP 82
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT--ASGFNQDGK--PCPPFKIVILDEADS 148
D +R R+LELNASD+RGI ++R+K+K FA+QT A DGK PCPP+KI+ILDEADS
Sbjct: 83 DNFRNRVLELNASDERGISIVREKIKNFARQTPRAQMVASDGKTYPCPPYKIIILDEADS 142
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR ME + TRFCL+CNYV+ II+PL SRCSKFRF PL ++ +RL I
Sbjct: 143 MTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSSSTSSRLSQI 202
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTGVIP 264
E V+ + + L+ TS GD+RR+IT LQS +RL I D+ E+ GV+P
Sbjct: 203 ATAEHVVLEPDVISALINTSSGDLRRSITYLQSASRLSASTNPPTPITAGDIQEIAGVVP 262
Query: 265 KPWIEKLLK-----------VDS--------FQVLEKYIEDLILEAYSATQLFDQFHDIV 305
+ K VD+ F ++ +++L+ + YSA+Q+ Q HDIV
Sbjct: 263 DAVVHDFAKTLGVEIVGDMDVDNDGRKKTRGFDAVQAKVKELMRQGYSASQIVSQLHDIV 322
Query: 306 MLASSLSDKQKAL 318
+L +L +QK++
Sbjct: 323 ILHPTLHARQKSI 335
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 23/153 (15%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTGVIPNPWIEKLLK--- 374
+ L+ TS GD+RR+IT LQS +RL I D+ E+ GV+P+ + K
Sbjct: 215 ISALINTSSGDLRRSITYLQSASRLSASTNPPTPITAGDIQEIAGVVPDAVVHDFAKTLG 274
Query: 375 --------VDS--------FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKA 418
VD+ F ++ +++L+ + YSA+Q+ Q HDIV+ +L +QK+
Sbjct: 275 VEIVGDMDVDNDGRKKTRGFDAVQAKVKELMRQGYSASQIVSQLHDIVILHPTLHARQKS 334
Query: 419 LILEKLAECNARLQDGASEYIQILDLGSIVIKA 451
+ AE + + DGA E + IL++G + KA
Sbjct: 335 ICALAFAEADKAICDGADEELWILEVGLRIHKA 367
>gi|260939858|ref|XP_002614229.1| hypothetical protein CLUG_05714 [Clavispora lusitaniae ATCC 42720]
gi|238852123|gb|EEQ41587.1| hypothetical protein CLUG_05714 [Clavispora lusitaniae ATCC 42720]
Length = 339
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 146/303 (48%), Positives = 203/303 (66%), Gaps = 8/303 (2%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTS 81
+S+ + R PWVEKYRPK +DDV Q V VL+K L A+LPH LFYGPPGTGKTS
Sbjct: 1 MSSYDQERLDHTPWVEKYRPKKLDDVASQDHAVRVLQKTLQSANLPHMLFYGPPGTGKTS 60
Query: 82 TMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG---KPCPP 137
T++A QL+G +YR R+LELNASD+RGI ++R K+K FA+ T S + + PCPP
Sbjct: 61 TVLALAKQLYGPRLYRSRVLELNASDERGISIVRQKIKNFARLTVSNPSPEDLREYPCPP 120
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
+KI+ILDEADSMT+ AQ+ALRRTME + TRFCLICNY++ II PL SRCSKFRF+ L
Sbjct: 121 YKIIILDEADSMTNDAQSALRRTMENYSGVTRFCLICNYITRIIDPLASRCSKFRFRSLD 180
Query: 198 ENTMLTRLQYICEQESV-MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDV 256
L+RL+Y+ EQE + + L ++ SGGD+R+AIT LQS R G+ + +
Sbjct: 181 GENALSRLRYVVEQEHIPLASDSVLNDILAVSGGDLRKAITYLQSATRSGDAGGVSSAKI 240
Query: 257 LEVTGVIPKPWIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSD 313
E++GV+ +E L ++ + + + + ++D +LE +SA Q Q HD+ +L +LS
Sbjct: 241 KEISGVVDDASMETLVGAIRAKNPKQIAQVVKDTVLEGWSAQQTAAQLHDVFLLDDALSS 300
Query: 314 KQK 316
++K
Sbjct: 301 QEK 303
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 73/126 (57%), Gaps = 3/126 (2%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL---LKVDSF 378
L ++ SGGD+R+AIT LQS R G+ + + E++GV+ + +E L ++ +
Sbjct: 205 LNDILAVSGGDLRKAITYLQSATRSGDAGGVSSAKIKEISGVVDDASMETLVGAIRAKNP 264
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
+ + + ++D +LE +SA Q Q HD+ + +LS ++K I L E + RL G E+
Sbjct: 265 KQIAQVVKDTVLEGWSAQQTAAQLHDVFLLDDALSSQEKNDIARLLFETDKRLNSGTDEH 324
Query: 439 IQILDL 444
IQ+L+L
Sbjct: 325 IQLLNL 330
>gi|19115452|ref|NP_594540.1| DNA replication factor C complex subunit Rfc2 [Schizosaccharomyces
pombe 972h-]
gi|1350581|sp|Q09843.1|RFC2_SCHPO RecName: Full=Replication factor C subunit 2; Short=Replication
factor C2; AltName: Full=Activator 1 41 kDa subunit
gi|1039340|emb|CAA91237.1| DNA replication factor C complex subunit Rfc2 [Schizosaccharomyces
pombe]
Length = 340
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 154/307 (50%), Positives = 196/307 (63%), Gaps = 10/307 (3%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
AP + KT + K +PWVE YRPKT+D V Q+ V VLKK L +LPH LFYG
Sbjct: 5 APRNKKTE-----QEAKKSIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYG 59
Query: 74 PPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
PGTGKTST++A +LFG + + R+LELNASD+RGI +IR+KVK+FA+ T + DG
Sbjct: 60 SPGTGKTSTILALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTN-KVDG 118
Query: 133 KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
PCPPFKI+ILDEADSMT AQAALRRTME + TRFCLICNY++ II PL+SRCSK+R
Sbjct: 119 YPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYR 178
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
FKPL M+ RL++I ++V + + LVE SGGDMR+AIT LQS A L G I
Sbjct: 179 FKPLDNENMVKRLEFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPIT 238
Query: 253 NEDVLEVTGVIPKPWIEKLLK---VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLAS 309
V E+ G +P I LL + +E D+ E YS + Q HD+++
Sbjct: 239 ISSVEELAGAVPYNIIRSLLDTAYTKNVSNIETLSRDVAAEGYSTGIILSQLHDVLLKEE 298
Query: 310 SLSDKQK 316
+LS K
Sbjct: 299 TLSSPVK 305
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSF 378
+ LVE SGGDMR+AIT LQS A L G I V E+ G +P I LL +
Sbjct: 207 VNALVECSGGDMRKAITFLQSAANLHQGTPITISSVEELAGAVPYNIIRSLLDTAYTKNV 266
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
+E D+ E YS + Q HD+++ +LS K I KL+E + RL DGA E
Sbjct: 267 SNIETLSRDVAAEGYSTGIILSQLHDVLLKEETLSSPVKYKIFMKLSEVDKRLNDGADET 326
Query: 439 IQILDLGSIV 448
+Q+LDL S +
Sbjct: 327 LQLLDLLSSI 336
>gi|402078075|gb|EJT73424.1| replication factor C subunit 2 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 384
Score = 298 bits (763), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 150/311 (48%), Positives = 205/311 (65%), Gaps = 28/311 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+ DV Q V+VL++ L ++LPH LFYGPPGTGKTST++A +LFG
Sbjct: 35 PWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTVLALAKELFGP 94
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ----QTASGFNQDGKPCPPFKIVILDEADS 148
++ R R+LELNASD+RGI ++R+KVK FA+ G+++ PCPPFKI+ILDEADS
Sbjct: 95 ELMRSRVLELNASDERGISIVREKVKDFARMQLTNPPPGYDRSKYPCPPFKIIILDEADS 154
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK L + RL++I
Sbjct: 155 MTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKARLEHI 214
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG-----GEG-----------IV 252
E+E V + A++ L+++S GD+R+AIT LQS ARL G GEG +
Sbjct: 215 AEKECVALEPGAVDALIKSSEGDLRKAITFLQSAARLVGAGRASGEGEQDTMDVDSKAVT 274
Query: 253 NEDVLEVTGVIPKPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305
+ V ++ GVIP I+ L++ ++Q + K +E+++ + +SATQ+ Q +
Sbjct: 275 AQIVEDIAGVIPTATIDGLVEAMRPRGSGQTYQSVAKVVENMVADGWSATQVVSQLFQAI 334
Query: 306 MLASSLSDKQK 316
M + D QK
Sbjct: 335 MYDEEIPDVQK 345
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 81/148 (54%), Gaps = 23/148 (15%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKG-----GEG-----------IVNEDVLEVTGVI 364
A++ L+++S GD+R+AIT LQS ARL G GEG + + V ++ GVI
Sbjct: 226 AVDALIKSSEGDLRKAITFLQSAARLVGAGRASGEGEQDTMDVDSKAVTAQIVEDIAGVI 285
Query: 365 PNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQK 417
P I+ L++ ++Q + K +E+++ + +SATQ+ Q +M + D QK
Sbjct: 286 PTATIDGLVEAMRPRGSGQTYQSVAKVVENMVADGWSATQVVSQLFQAIMYDEEIPDVQK 345
Query: 418 ALILEKLAECNARLQDGASEYIQILDLG 445
I +E + RL DGA E++ ILDLG
Sbjct: 346 NAISIVFSEIDKRLVDGADEHLSILDLG 373
>gi|323507744|emb|CBQ67615.1| probable RFC2-DNA replication factor C, 41 KD subunit [Sporisorium
reilianum SRZ2]
Length = 385
Score = 298 bits (762), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 156/315 (49%), Positives = 201/315 (63%), Gaps = 32/315 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTIDDV Q+ V+VLKK L +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 30 PWVEKYRPKTIDDVAAQEHTVAVLKKTLMSNNLPHMLFYGPPGTGKTSTILALARQLFGP 89
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ + R+LELNASD+RGI V+R+K+K FA+ + ++G PCPPFKI+ILDEADSMT
Sbjct: 90 ELMKTRVLELNASDERGISVVREKIKNFAKLAVTN-PKEGFPCPPFKIIILDEADSMTQD 148
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRR ME+ ++ TRFCL+CNYV+ II+PL SRCSKFRF+ L ++ TRL+ I E
Sbjct: 149 AQSALRRIMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFRSLDTSSTKTRLEMIASAE 208
Query: 213 SV-MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG-----IVNEDVLEVTGVIPKP 266
SV D L+TL+ TS GD+RRAIT LQS +RL G + +E ++E+ GV+P
Sbjct: 209 SVSFQDSTVLDTLISTSDGDLRRAITYLQSASRLHSIAGDEKSSVTSESIVEIAGVVPTR 268
Query: 267 WIEKLL------------------------KVDSFQVLEKYIEDLILEAYSATQLFDQFH 302
I L K D+F + + + E YS TQL Q H
Sbjct: 269 VITSLADAVGIEAYNADDDVEMEAVGAPAKKRDAFDRIRDEVRIITREGYSITQLLVQLH 328
Query: 303 DIVMLASSLSDKQKA 317
D V+ +L K KA
Sbjct: 329 DYVIAHPTLLAKIKA 343
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 68/145 (46%), Gaps = 29/145 (20%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEG-----IVNEDVLEVTGVIPNPWIEKLL--- 373
L+TL+ TS GD+RRAIT LQS +RL G + +E ++E+ GV+P I L
Sbjct: 218 LDTLISTSDGDLRRAITYLQSASRLHSIAGDEKSSVTSESIVEIAGVVPTRVITSLADAV 277
Query: 374 ---------------------KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL 412
K D+F + + + E YS TQL Q HD V++ +L
Sbjct: 278 GIEAYNADDDVEMEAVGAPAKKRDAFDRIRDEVRIITREGYSITQLLVQLHDYVIAHPTL 337
Query: 413 SDKQKALILEKLAECNARLQDGASE 437
K KA +AE + L DGA E
Sbjct: 338 LAKIKAKAALLMAEMDKCLIDGADE 362
>gi|403216588|emb|CCK71084.1| hypothetical protein KNAG_0G00260 [Kazachstania naganishii CBS
8797]
Length = 350
Score = 298 bits (762), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 148/300 (49%), Positives = 202/300 (67%), Gaps = 14/300 (4%)
Query: 23 STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
+T K NKP WVEKYRPK +D+V Q V+VLKK L ADLPH LFYGPPGTGKTST
Sbjct: 15 NTESKEENKP--WVEKYRPKNLDEVTAQDHAVNVLKKTLKSADLPHMLFYGPPGTGKTST 72
Query: 83 MIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG---KPCPPF 138
++A +LFG ++ + R+LELNASD+RGI ++R+KVK FA+ T S +++ PCPPF
Sbjct: 73 ILALTKELFGPELTKSRVLELNASDERGISIVREKVKNFARLTVSKPSKNDLEKYPCPPF 132
Query: 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAE 198
KI+ILDEADSMT AQ+ALRRTME + TRFCLICNY++ II PL SRCSKFRFK L E
Sbjct: 133 KIIILDEADSMTADAQSALRRTMETYSSVTRFCLICNYITRIIDPLASRCSKFRFKSLDE 192
Query: 199 NTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK---GGEGIVNED 255
+ + RLQY+ +QESV+C+ ALE ++ S GD+R+AIT LQS ++L+ G + + ++
Sbjct: 193 SNAMDRLQYVAKQESVICEDGALEKILIVSSGDLRKAITLLQSSSKLRNYTGTDKVTSKQ 252
Query: 256 VLEVTGVIPK----PWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSL 311
V E+ G +P +EK+ D + Y+ + +S + Q HD +++ +
Sbjct: 253 VEELAGRVPNDILGELVEKIASKD-LDAIIAYVNNFAKSGWSGVSVISQLHDYYIMSDNF 311
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 70/131 (53%), Gaps = 8/131 (6%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLK---GGEGIVNEDVLEVTGVIPN----PWIEKLL 373
ALE ++ S GD+R+AIT LQS ++L+ G + + ++ V E+ G +PN +EK+
Sbjct: 214 ALEKILIVSSGDLRKAITLLQSSSKLRNYTGTDKVTSKQVEELAGRVPNDILGELVEKIA 273
Query: 374 KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQD 433
D + Y+ + +S + Q HD + + + K I L + +A+L +
Sbjct: 274 SKD-LDAIIAYVNNFAKSGWSGVSVISQLHDYYIMSDNFDTAFKNRISLILFDTDAKLTN 332
Query: 434 GASEYIQILDL 444
G +E++Q+L+L
Sbjct: 333 GTNEHLQLLNL 343
>gi|405124075|gb|AFR98837.1| activator 1 41 kda subunit [Cryptococcus neoformans var. grubii
H99]
Length = 363
Score = 297 bits (760), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 153/312 (49%), Positives = 202/312 (64%), Gaps = 30/312 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTIDDV Q V+VL+K L+ +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 19 PWVEKYRPKTIDDVSSQDNTVAVLRKALASTNLPHMLFYGPPGTGKTSTILALARQLFGP 78
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT---ASGFNQDGK--PCPPFKIVILDEAD 147
D++R R+LELNASD+RGI V+R+K+K+FA++T A G + DGK PCPPFK++ILDEAD
Sbjct: 79 DLFRARVLELNASDERGISVVREKIKSFARETPRHAPGISSDGKEYPCPPFKLIILDEAD 138
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
SMT AQ+ALRR ME +K TRFCL+CNYV+ II+PL SRCSKFRFKPL + + R++
Sbjct: 139 SMTQDAQSALRRIMETYSKITRFCLVCNYVTRIIEPLASRCSKFRFKPLEQGSTRARMEM 198
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG----EGIVNEDVLEVTGVI 263
I E E V D + ++E +GGD+R+AIT LQ+ RL + + E++GV+
Sbjct: 199 IAENEGVQTDPGVISLILELAGGDLRKAITYLQTAQRLHSSIEPPTPVSALSIHEISGVV 258
Query: 264 PKPWIEKLLKV-----------------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
P+ I LL D V K +E E +S Q+ +Q HD ++
Sbjct: 259 PEDLITDLLAAMGVDRQIGIDRSLARGFDGVMVAVKRVER---EGWSVGQVLEQIHDALI 315
Query: 307 LASSLSDKQKAL 318
S+ QK+L
Sbjct: 316 PIPSIPAVQKSL 327
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 24/140 (17%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGG----EGIVNEDVLEVTGVIPNPWIEKLLKV----- 375
++E +GGD+R+AIT LQ+ RL + + E++GV+P I LL
Sbjct: 215 ILELAGGDLRKAITYLQTAQRLHSSIEPPTPVSALSIHEISGVVPEDLITDLLAAMGVDR 274
Query: 376 ------------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 423
D V K +E E +S Q+ +Q HD ++ S+ QK+L
Sbjct: 275 QIGIDRSLARGFDGVMVAVKRVER---EGWSVGQVLEQIHDALIPIPSIPAVQKSLAGIA 331
Query: 424 LAECNARLQDGASEYIQILD 443
+AEC+ L +G E +Q+LD
Sbjct: 332 IAECDKGLCEGGDEELQLLD 351
>gi|190409543|gb|EDV12808.1| replication factor C subunit 2 [Saccharomyces cerevisiae RM11-1a]
Length = 353
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/281 (53%), Positives = 195/281 (69%), Gaps = 11/281 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +D+V Q V+VLKK L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADSM 149
D+ + RILELNASD+RGI ++R+KVK FA+ T S + + PCPP+KI+ILDEADSM
Sbjct: 86 DLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L + + RL++I
Sbjct: 146 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFIS 205
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPK 265
EQE+V CD LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P
Sbjct: 206 EQENVKCDDGVLERILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAGVVPH 265
Query: 266 P-WIEKLLKVDS--FQVLEKYIEDLILEAYSATQLFDQFHD 303
IE + KV S F ++KY+ + +SAT + +Q H+
Sbjct: 266 DILIEIVEKVKSGDFDEIKKYVNTFMKSGWSATSVVNQLHE 306
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 74/130 (56%), Gaps = 7/130 (5%)
Query: 322 LETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPNP-WIEKLLKVD 376
LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P+ IE + KV
Sbjct: 217 LERILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVK 276
Query: 377 S--FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
S F ++KY+ + +SAT + +Q H+ ++ + K I L ++RL +G
Sbjct: 277 SGDFDEIKKYVNTFMKSGWSATSVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNG 336
Query: 435 ASEYIQILDL 444
+E+IQ+L+L
Sbjct: 337 TNEHIQLLNL 346
>gi|366988801|ref|XP_003674168.1| hypothetical protein NCAS_0A12300 [Naumovozyma castellii CBS 4309]
gi|342300031|emb|CCC67788.1| hypothetical protein NCAS_0A12300 [Naumovozyma castellii CBS 4309]
Length = 350
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 145/281 (51%), Positives = 194/281 (69%), Gaps = 12/281 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +DD+ Q V+VLKK L A+LPH LFYGPPGTGKTST++A +LFG
Sbjct: 24 PWVEKYRPKQLDDIAAQGHAVTVLKKTLQSANLPHMLFYGPPGTGKTSTILALAKELFGP 83
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD---GKPCPPFKIVILDEADSM 149
++ + RILELNASD+RGI ++R+KVK FA+ T S +++ PCPP+KI+ILDEADSM
Sbjct: 84 ELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKNDLENYPCPPYKIIILDEADSM 143
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFKPL + RL+Y+
Sbjct: 144 TSDAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKPLDATNAIDRLRYVA 203
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR---LKGGEGIVNEDVLEVTGVIP-- 264
+ESV + L+T+++ S GD+RRAIT LQS A+ G E + +++V E+ GV+P
Sbjct: 204 TEESVSYEDDVLKTILDISAGDLRRAITLLQSAAKRIQYTGAENVTSQNVKELAGVVPDD 263
Query: 265 --KPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHD 303
K +EK+ + ++E Y+ + +S + DQ HD
Sbjct: 264 ILKMIVEKVSNKNVNDIIE-YVNEFTKSGWSGAAVIDQLHD 303
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 73/130 (56%), Gaps = 8/130 (6%)
Query: 322 LETLVETSGGDMRRAITCLQSCAR---LKGGEGIVNEDVLEVTGVIPNPW----IEKLLK 374
L+T+++ S GD+RRAIT LQS A+ G E + +++V E+ GV+P+ +EK+
Sbjct: 215 LKTILDISAGDLRRAITLLQSAAKRIQYTGAENVTSQNVKELAGVVPDDILKMIVEKVSN 274
Query: 375 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
+ ++E Y+ + +S + DQ HD +S K + L + +A+L +G
Sbjct: 275 KNVNDIIE-YVNEFTKSGWSGAAVIDQLHDYYISNDEYDTAFKNNVSMILFDTDAKLSNG 333
Query: 435 ASEYIQILDL 444
+E++Q+L+L
Sbjct: 334 TNEHLQLLNL 343
>gi|299117347|emb|CBN75303.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 354
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 143/289 (49%), Positives = 192/289 (66%), Gaps = 5/289 (1%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+DDV Q EV + LK ++ LPH LFYGPPGTGKTST +A LFG
Sbjct: 29 PWVEKYRPKTVDDVAHQDEVTNTLKGAIATGVLPHLLFYGPPGTGKTSTALALARTLFGP 88
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTH 151
D YR+RILELNASD+RGI+V+R+K+KTFAQ +Q G PCPPFK++ILDEAD+MT
Sbjct: 89 DTYRDRILELNASDERGIKVVREKIKTFAQVAVGRATHQAGYPCPPFKVIILDEADTMTP 148
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ+ALRRTME + TRFCLICNYV+ II+PL SRC+KFRF L + ML RL YI +
Sbjct: 149 DAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISRE 208
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL 271
E V L+ +V+ SGGDMR+A+T +QS ++ G + E ++++ G IP E L
Sbjct: 209 EDVKIAADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKEAL 268
Query: 272 ---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
+K S+ + ++D + Y + L + + + +++ D +KA
Sbjct: 269 WSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKA 317
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 76/134 (56%), Gaps = 3/134 (2%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL---LKVDS 377
L+ +V+ SGGDMR+A+T +QS ++ G + E ++++ G IP E L +K S
Sbjct: 217 GLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKEALWSAIKSGS 276
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
+ + ++D + Y + L + + ++ +++ D +KA I ++AE + L DG +E
Sbjct: 277 YNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADRCLIDGCNE 336
Query: 438 YIQILDLGSIVIKA 451
+Q+LDL S+ ++
Sbjct: 337 ELQLLDLASVAARS 350
>gi|388852328|emb|CCF53943.1| probable RFC2-DNA replication factor C, 41 KD subunit [Ustilago
hordei]
Length = 383
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 155/313 (49%), Positives = 203/313 (64%), Gaps = 30/313 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTIDDV Q+ V+VLKK L +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 30 PWVEKYRPKTIDDVAAQEHTVAVLKKTLMSNNLPHMLFYGPPGTGKTSTILALARQLFGP 89
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ + R+LELNASD+RGI V+R+K+K FA+ + ++G PCPPFKI+ILDEADSMT
Sbjct: 90 ELVKTRVLELNASDERGITVVREKIKNFAKLAVTN-PKEGFPCPPFKIIILDEADSMTQD 148
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRR ME+ ++ TRFCL+CNYV+ II+PL SRCSKFRF+ L + TRL+ I E
Sbjct: 149 AQSALRRIMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFRSLDTCSTKTRLEMIAGAE 208
Query: 213 SV-MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG-----IVNEDVLEVTGVIPKP 266
SV D L+TL+ TS GD+RRAIT LQS +RL G + +E ++E+ GV+P
Sbjct: 209 SVSFQDSSVLDTLITTSDGDLRRAITYLQSASRLHSIAGDDKTSVTSESIVEIAGVVPTR 268
Query: 267 WIEKLL----------------------KVDSFQVLEKYIEDLILEAYSATQLFDQFHDI 304
I L K D+F+ + + ++ + E YS TQL Q HD
Sbjct: 269 VITSLADAVAIEPYTSDGDEDMDPVSKKKRDAFERIREQVKIITREGYSITQLLVQLHDY 328
Query: 305 VMLASSLSDKQKA 317
++ +L K KA
Sbjct: 329 IISHPTLLAKIKA 341
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 72/143 (50%), Gaps = 27/143 (18%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEG-----IVNEDVLEVTGVIPNPWIEKLL--- 373
L+TL+ TS GD+RRAIT LQS +RL G + +E ++E+ GV+P I L
Sbjct: 218 LDTLITTSDGDLRRAITYLQSASRLHSIAGDDKTSVTSESIVEIAGVVPTRVITSLADAV 277
Query: 374 -------------------KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSD 414
K D+F+ + + ++ + E YS TQL Q HD ++S +L
Sbjct: 278 AIEPYTSDGDEDMDPVSKKKRDAFERIREQVKIITREGYSITQLLVQLHDYIISHPTLLA 337
Query: 415 KQKALILEKLAECNARLQDGASE 437
K KA + +AE + L DGA E
Sbjct: 338 KIKAKVALLMAEMDKCLTDGADE 360
>gi|190347750|gb|EDK40085.2| hypothetical protein PGUG_04183 [Meyerozyma guilliermondii ATCC
6260]
Length = 347
Score = 296 bits (758), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 148/294 (50%), Positives = 197/294 (67%), Gaps = 11/294 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +DDV Q V+VLKK L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 21 PWVEKYRPKNLDDVASQDHAVNVLKKSLVSANLPHMLFYGPPGTGKTSTVLALARELYGP 80
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT---ASGFNQDGKPCPPFKIVILDEADSM 149
D+ + R+LELNASD+RGI ++R KVK FA+ T AS + + PCPP+K++ILDEADSM
Sbjct: 81 DLIKSRVLELNASDERGIAIVRQKVKNFARLTVSNASPEDLEKYPCPPYKLIILDEADSM 140
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+ AQAALRRTME + TRFCLICNY++ II PL SRCSKFRFKPLA + + RL+YI
Sbjct: 141 TYDAQAALRRTMETYSGVTRFCLICNYITRIIDPLASRCSKFRFKPLANDNAVQRLRYIV 200
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG----GEGIVNEDVLEVTGVIPK 265
+QE + D L+ S GD+RRAIT LQS ARL I + E+ GV+P+
Sbjct: 201 QQEELNVDEDVFSYLLTISNGDLRRAITYLQSAARLASTTTEETTISAATLREIAGVVPE 260
Query: 266 PWIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
++ L L+ + + DL+ + + A Q+ DQ H++ + + S+S + K
Sbjct: 261 EQLKILHNTLEDKDVSAITSVVGDLVSQGWGAQQVLDQLHELYVHSDSISTETK 314
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 7/122 (5%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTGVIPNPWIEKL---LKVDS 377
L+ S GD+RRAIT LQS ARL I + E+ GV+P ++ L L+
Sbjct: 215 LLTISNGDLRRAITYLQSAARLASTTTEETTISAATLREIAGVVPEEQLKILHNTLEDKD 274
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
+ + DL+ + + A Q+ DQ H++ + + S+S + K + E + RL +GA E
Sbjct: 275 VSAITSVVGDLVSQGWGAQQVLDQLHELYVHSDSISTETKNRAARLMFETDRRLNNGADE 334
Query: 438 YI 439
++
Sbjct: 335 HL 336
>gi|150865911|ref|XP_001385318.2| Replication factor C, subunit RFC4 [Scheffersomyces stipitis CBS
6054]
gi|149387167|gb|ABN67289.2| Replication factor C, subunit RFC4 [Scheffersomyces stipitis CBS
6054]
Length = 369
Score = 295 bits (756), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 151/316 (47%), Positives = 201/316 (63%), Gaps = 28/316 (8%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
R + PWVEKYRP+ +DDV Q V VLKK + A+LPH LFYGPPGTGKTST++A
Sbjct: 19 RLEHTPWVEKYRPRNLDDVASQDHAVKVLKKTMESANLPHMLFYGPPGTGKTSTILALSK 78
Query: 89 QLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG---KPCPPFKIVILD 144
QL+G ++Y+ R+LELNASD+RGI ++R K+K FA+ T S +++ PCPP+KI+ILD
Sbjct: 79 QLYGPNLYKSRVLELNASDERGISIVRQKIKNFARLTVSNPSKEDLEKYPCPPYKIIILD 138
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EADSMT+ AQAALRRT+E + TRFCLICNYV+ II PL SRCSKFRF+ L L R
Sbjct: 139 EADSMTNDAQAALRRTIENYSNITRFCLICNYVTRIIDPLASRCSKFRFRLLNNENALNR 198
Query: 205 LQYICEQESVMCDFK--ALETLVETSGGDMRRAITCLQSCARLKG--------------- 247
L+YI EQE + D L+ ++ SGGD+R+AIT LQS +L
Sbjct: 199 LKYIAEQEHISLDSNQLVLQEVLRISGGDLRKAITFLQSATKLHKSLAAPTEEDGDIQML 258
Query: 248 ----GEGIVNEDVLEVTGVIPKPWIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQ 300
GE I E + E+ GVIP+ I ++ +K + + + + D+I + +SA Q+ DQ
Sbjct: 259 DEIPGEAITVESIQEIAGVIPENVILEVVSTIKSKNSKSIITQVNDIISQGFSAQQVLDQ 318
Query: 301 FHDIVMLASSLSDKQK 316
HD +L SL K
Sbjct: 319 LHDKFILDDSLDSATK 334
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 72/145 (49%), Gaps = 22/145 (15%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKG-------------------GEGIVNEDVLEVTG 362
L+ ++ SGGD+R+AIT LQS +L GE I E + E+ G
Sbjct: 217 LQEVLRISGGDLRKAITFLQSATKLHKSLAAPTEEDGDIQMLDEIPGEAITVESIQEIAG 276
Query: 363 VIPNPWIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKAL 419
VIP I ++ +K + + + + D+I + +SA Q+ DQ HD + SL K
Sbjct: 277 VIPENVILEVVSTIKSKNSKSIITQVNDIISQGFSAQQVLDQLHDKFILDDSLDSATKNK 336
Query: 420 ILEKLAECNARLQDGASEYIQILDL 444
I + L + RL +G E+IQ+LDL
Sbjct: 337 IAKTLFLIDKRLNNGTDEHIQLLDL 361
>gi|302808211|ref|XP_002985800.1| hypothetical protein SELMODRAFT_123078 [Selaginella moellendorffii]
gi|300146307|gb|EFJ12977.1| hypothetical protein SELMODRAFT_123078 [Selaginella moellendorffii]
Length = 345
Score = 295 bits (756), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 155/297 (52%), Positives = 195/297 (65%), Gaps = 16/297 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
WVEKYRPK + DV Q EVV L L +LPH LFYGPPGTGKTST +A +LFG
Sbjct: 7 WVEKYRPKQVKDVAHQDEVVRTLANALETGNLPHLLFYGPPGTGKTSTALAVTRELFGPQ 66
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+Y+ R+LELNASDDRGI V+R K+K FA A G PCPPFK++ILDEADSMT A
Sbjct: 67 LYKTRVLELNASDDRGINVVRTKIKDFA-AVAVGRGVSDYPCPPFKVIILDEADSMTEDA 125
Query: 154 QAALRRTMEKETKSTRFCLICNYVS--C--------IIQPLTSRCSKFRFKPLAENTMLT 203
Q ALRRTME +K TRFC ICNY+S C II+PL SRC+KFRFK L ++ M
Sbjct: 126 QNALRRTMETYSKVTRFCFICNYISRLCKTIILCFRIIEPLASRCAKFRFKSLNQDVMHG 185
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
R+ +IC +E V +AL TL S GD+RRAIT LQS RL G I ++D+L V+GVI
Sbjct: 186 RILHICSEEGVQMGSEALATLSRVSEGDLRRAITYLQSATRLYGS-SITSKDILSVSGVI 244
Query: 264 PKPWIEKLLKVDS---FQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
P I+ LL+ + F +K + ++I E Y +Q+F Q +D V+ + +SD+QKA
Sbjct: 245 PDNVIQSLLQACTSGVFDQAQKEVTNIIAEGYPVSQIFSQVYDHVVESPEISDEQKA 301
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 87/135 (64%), Gaps = 4/135 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDS-- 377
+AL TL S GD+RRAIT LQS RL G I ++D+L V+GVIP+ I+ LL+ +
Sbjct: 201 EALATLSRVSEGDLRRAITYLQSATRLYGS-SITSKDILSVSGVIPDNVIQSLLQACTSG 259
Query: 378 -FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F +K + ++I E Y +Q+F Q +D V+ + +SD+QKA I ++LAE + L DGA
Sbjct: 260 VFDQAQKEVTNIIAEGYPVSQIFSQVYDHVVESPEISDEQKAKICQRLAEADKCLLDGAD 319
Query: 437 EYIQILDLGSIVIKA 451
E +Q++D+ S ++A
Sbjct: 320 ESLQLMDVCSNTMRA 334
>gi|159476624|ref|XP_001696411.1| DNA replication factor C complex subunit 4 [Chlamydomonas
reinhardtii]
gi|158282636|gb|EDP08388.1| DNA replication factor C complex subunit 4 [Chlamydomonas
reinhardtii]
gi|294845967|gb|ADF43126.1| RFC4p [Chlamydomonas reinhardtii]
Length = 332
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 154/301 (51%), Positives = 199/301 (66%), Gaps = 13/301 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + +V Q+EVV+ L + L A+LPH LFYGPPGTGKTST +A QL+G
Sbjct: 5 PWVEKYRPKNVSEVAYQEEVVNTLTRALETANLPHLLFYGPPGTGKTSTALAIARQLYGP 64
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ + R+LELNASD+RGI V+R+KVK FA TA G G PCPP+K++ILDEADSMT
Sbjct: 65 ELMKSRVLELNASDERGIHVVREKVKAFAA-TAVGAPVPGYPCPPYKLLILDEADSMTQD 123
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME ++ TRF ICNYVS II+PL SRC+KFRFKPL M R+++ICE+E
Sbjct: 124 AQNALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQPAIMAGRIEHICERE 183
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL- 271
SV AL+TL SGGD+RRAI LQS ARL GG + +L+V+G + + L
Sbjct: 184 SVTLGPGALDTLSAVSGGDLRRAINTLQSAARLGGGH-VDRATLLDVSGQVAPEVVSSLA 242
Query: 272 ------LKVDSFQVLEKYIEDLILEAYSATQLFDQFH-DIVMLASSLSDKQKALFKALET 324
F L+K ++++I E Y+A Q+ Q +++ A SD + L ALE
Sbjct: 243 AACRATGAAGRFGALQKQVQNIIAEGYAAQQVLLQLQAELLSGADGGSDLR--LCGALEA 300
Query: 325 L 325
L
Sbjct: 301 L 301
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 70/132 (53%), Gaps = 9/132 (6%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL-------L 373
AL+TL SGGD+RRAI LQS ARL GG + +L+V+G + + L
Sbjct: 191 ALDTLSAVSGGDLRRAINTLQSAARLGGGH-VDRATLLDVSGQVAPEVVSSLAAACRATG 249
Query: 374 KVDSFQVLEKYIEDLILEAYSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECNARLQ 432
F L+K ++++I E Y+A Q+ Q +++ A SD + LE LA + L
Sbjct: 250 AAGRFGALQKQVQNIIAEGYAAQQVLLQLQAELLSGADGGSDLRLCGALEALAGADYSLV 309
Query: 433 DGASEYIQILDL 444
GA E +Q+L++
Sbjct: 310 VGADEALQLLNV 321
>gi|351707100|gb|EHB10019.1| Replication factor C subunit 4 [Heterocephalus glaber]
Length = 361
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 163/325 (50%), Positives = 212/325 (65%), Gaps = 39/325 (12%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVS----TSGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + S+ V+ SG+ + KPVPWVEKY PK +D+V Q EVV+
Sbjct: 34 MQAFLKGTSISTKPLSTKDQGVAATAENSGENKKVKPVPWVEKYHPKCVDEVAFQ-EVVA 92
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELN S +RGIQV+R
Sbjct: 93 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAAQELFGPELFRSRVLELNGSGERGIQVVR 152
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ G DGKPCPPFK+VILDEADSMT AAQAALR TME E+K+ RF C
Sbjct: 153 EKVKNFAQLAVPGSRSDGKPCPPFKVVILDEADSMTSAAQAALRYTME-ESKTIRF---C 208
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYV+ II+PLTSRCSKFRFKPL++ RL I ++E+V + + LV+ S GD+R+
Sbjct: 209 NYVNRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISNEGIAYLVKVSEGDLRK 268
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKVDSFQVLEKYIEDLILEAYSA 294
AIT LQS ++ G SF LE +++LI E ++A
Sbjct: 269 AIT-LQSATQVTSG---------------------------SFDKLEAVVKNLINEGHAA 300
Query: 295 TQLFDQFHDIVMLASSLSDKQKALF 319
TQL +Q D ++ +LSDKQK++
Sbjct: 301 TQLVNQVRDAIVENDNLSDKQKSIM 325
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 28/126 (22%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKY 384
LV+ S GD+R+AIT LQS ++ G SF LE
Sbjct: 258 LVKVSEGDLRKAIT-LQSATQVTSG---------------------------SFDKLEAV 289
Query: 385 IEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 444
+++LI E ++ATQL +Q D ++ +LSDKQK+++ EKLAE L DGA E++Q++ L
Sbjct: 290 VKNLINEGHAATQLVNQVRDAIVENDNLSDKQKSIMTEKLAEDGKCLADGADEHLQLISL 349
Query: 445 GSIVIK 450
+ V++
Sbjct: 350 CATVMQ 355
>gi|151945136|gb|EDN63387.1| replication factor C subunit 2 [Saccharomyces cerevisiae YJM789]
gi|256273083|gb|EEU08038.1| Rfc2p [Saccharomyces cerevisiae JAY291]
gi|259147531|emb|CAY80782.1| Rfc2p [Saccharomyces cerevisiae EC1118]
gi|323336956|gb|EGA78213.1| Rfc2p [Saccharomyces cerevisiae Vin13]
gi|323347871|gb|EGA82132.1| Rfc2p [Saccharomyces cerevisiae Lalvin QA23]
gi|349579253|dbj|GAA24416.1| K7_Rfc2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365764724|gb|EHN06245.1| Rfc2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 353
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 148/281 (52%), Positives = 194/281 (69%), Gaps = 11/281 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +D+V Q V+VLKK L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADSM 149
D+ + RILELNASD+RGI ++R+KVK FA+ T S + + PCPP+KI+ILDEADSM
Sbjct: 86 DLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L + + RL++I
Sbjct: 146 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFIS 205
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPK 265
EQE+V CD LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P
Sbjct: 206 EQENVKCDDGVLERILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAGVVPH 265
Query: 266 P-WIEKLLKVDS--FQVLEKYIEDLILEAYSATQLFDQFHD 303
IE + KV S F ++KY+ + +SA + +Q H+
Sbjct: 266 DILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHE 306
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 73/130 (56%), Gaps = 7/130 (5%)
Query: 322 LETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPNP-WIEKLLKVD 376
LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P+ IE + KV
Sbjct: 217 LERILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVK 276
Query: 377 S--FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
S F ++KY+ + +SA + +Q H+ ++ + K I L ++RL +G
Sbjct: 277 SGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNG 336
Query: 435 ASEYIQILDL 444
+E+IQ+L+L
Sbjct: 337 TNEHIQLLNL 346
>gi|345566715|gb|EGX49657.1| hypothetical protein AOL_s00078g146 [Arthrobotrys oligospora ATCC
24927]
Length = 387
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 149/317 (47%), Positives = 204/317 (64%), Gaps = 31/317 (9%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
++PVPWVEKYRPKT+ DV Q VSVL++ L ++LPH LFYGPPGTGKTST++A +
Sbjct: 32 DRPVPWVEKYRPKTLSDVTAQDHTVSVLRRTLQSSNLPHMLFYGPPGTGKTSTILALAKE 91
Query: 90 LFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ---QTASGFNQDGKPCPPFKIVILDE 145
L+G ++ + R+LELNASD+RGI ++R+KVK FA+ T + N PCPP+KI+ILDE
Sbjct: 92 LYGPELMKTRVLELNASDERGISIVREKVKNFAKIAVSTTTAANASKYPCPPYKIIILDE 151
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
ADSMTH AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFKPL E RL
Sbjct: 152 ADSMTHDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKPLDEGNTRLRL 211
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL------------------KG 247
I E E V ++TL++ + GD+R+AIT LQS A+L KG
Sbjct: 212 SSIAEAEGVKYQEGVVDTLIKVADGDLRKAITFLQSAAKLHGAVKERTGDDMEVDSGAKG 271
Query: 248 GEGIVNEDVLEVTGVIPKPWIEKLLKV--------DSFQVLEKYIEDLILEAYSATQLFD 299
GE I + E+ GVIP+ I+ L++ + + ++D++ + +SA Q+
Sbjct: 272 GE-ITVRSIEEIAGVIPEKTIDDLMQSMEPRPHGQAVYTPVATIVQDIVADGWSAAQVLL 330
Query: 300 QFHDIVMLASSLSDKQK 316
Q ++ ++ + L+ QK
Sbjct: 331 QLYNRLVFSDMLTGNQK 347
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 78/149 (52%), Gaps = 27/149 (18%)
Query: 322 LETLVETSGGDMRRAITCLQSCARL------------------KGGEGIVNEDVLEVTGV 363
++TL++ + GD+R+AIT LQS A+L KGGE I + E+ GV
Sbjct: 227 VDTLIKVADGDLRKAITFLQSAAKLHGAVKERTGDDMEVDSGAKGGE-ITVRSIEEIAGV 285
Query: 364 IPNPWIEKLLKV--------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDK 415
IP I+ L++ + + ++D++ + +SA Q+ Q ++ ++ + L+
Sbjct: 286 IPEKTIDDLMQSMEPRPHGQAVYTPVATIVQDIVADGWSAAQVLLQLYNRLVFSDMLTGN 345
Query: 416 QKALILEKLAECNARLQDGASEYIQILDL 444
QK I+ +E + RL DGA E++ ILD+
Sbjct: 346 QKNQIVAIFSEIDKRLVDGADEHLVILDM 374
>gi|225459627|ref|XP_002285875.1| PREDICTED: replication factor C subunit 4 isoform 2 [Vitis
vinifera]
Length = 329
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 152/289 (52%), Positives = 194/289 (67%), Gaps = 19/289 (6%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q EV PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVC------------PHMLFYGPPGTGKTTTALAIAHQLFGP 57
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y+ R+LELNASDDRGI V+R K+K FA SG Q G PCPP+KI+ILDEADSMT
Sbjct: 58 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIIILDEADSMTE 117
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M +R+ +IC++
Sbjct: 118 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKE 177
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL 271
E + D +AL TL S GD+RRAIT LQ ARL G I ++D++ V+GV+P+ ++ L
Sbjct: 178 EELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGSI-ISSKDLISVSGVVPQHVVQAL 236
Query: 272 L---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
K F K + ++I E Y +Q+ Q D+V+ A +SD+QKA
Sbjct: 237 FAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEA-DISDEQKA 284
Score = 94.7 bits (234), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 83/135 (61%), Gaps = 5/135 (3%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
+AL TL S GD+RRAIT LQ ARL G I ++D++ V+GV+P ++ L K
Sbjct: 185 EALSTLSSISQGDLRRAITYLQGAARLFGSI-ISSKDLISVSGVVPQHVVQALFAACKSG 243
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F K + ++I E Y +Q+ Q D+V+ A +SD+QKA I ++LAE + L DGA
Sbjct: 244 DFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEAD-ISDEQKARICKRLAEADKCLVDGAD 302
Query: 437 EYIQILDLGSIVIKA 451
EY+Q+LD+ S ++A
Sbjct: 303 EYLQLLDVASNAMRA 317
>gi|401625031|gb|EJS43057.1| rfc2p [Saccharomyces arboricola H-6]
Length = 353
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 143/281 (50%), Positives = 192/281 (68%), Gaps = 11/281 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVE+YRPK +D+V Q V+VLKK L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 26 PWVERYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADSM 149
++ + RILELNASD+RGI ++R+KVK FA+ T S + + PCPP+KI+ILDEADSM
Sbjct: 86 ELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L N + RL+YI
Sbjct: 146 TADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKALDANNAIDRLRYIS 205
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPK 265
EQE+V CD LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+PK
Sbjct: 206 EQENVKCDAGVLERILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAGVVPK 265
Query: 266 PWIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHD 303
+ ++ +K F + K++ + +S + +Q H+
Sbjct: 266 EVLMEIVDKVKSGDFDEINKHVNTFMKSGWSGASVVNQLHE 306
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 69/130 (53%), Gaps = 7/130 (5%)
Query: 322 LETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPNPWIEKLL---K 374
LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P + +++ K
Sbjct: 217 LERILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAGVVPKEVLMEIVDKVK 276
Query: 375 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
F + K++ + +S + +Q H+ ++ + K I L +++L +G
Sbjct: 277 SGDFDEINKHVNTFMKSGWSGASVVNQLHEYYITNDAFDTNFKNQISWLLFTTDSKLNNG 336
Query: 435 ASEYIQILDL 444
+E+IQ+L+L
Sbjct: 337 TNEHIQLLNL 346
>gi|213403013|ref|XP_002172279.1| replication factor C subunit 2 [Schizosaccharomyces japonicus
yFS275]
gi|212000326|gb|EEB05986.1| replication factor C subunit 2 [Schizosaccharomyces japonicus
yFS275]
Length = 340
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 155/316 (49%), Positives = 198/316 (62%), Gaps = 11/316 (3%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
AP S+K + K VPWVE YRPK++D+V Q + VLKK + +LPH LFYG
Sbjct: 5 APQSAKVQAHLTKKA----VPWVEHYRPKSLDEVSSQDMTIQVLKKTMMSNNLPHMLFYG 60
Query: 74 PPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
PGTGKTST++A +LFG + + R+LELNASD+RGI +IR+KVK FA+ A +G
Sbjct: 61 SPGTGKTSTILALARELFGPQLVKSRVLELNASDERGISIIREKVKNFAR-IAVNNTVNG 119
Query: 133 KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
PCPPFKIVILDEADSMT AQAALRRTME + TRFCL+CNYV+ II PL SRCSK+R
Sbjct: 120 YPCPPFKIVILDEADSMTQDAQAALRRTMEATARITRFCLVCNYVTRIIDPLASRCSKYR 179
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
FKPL + RL++I ++V + ++ LV SGGDMR+AIT LQS A L G +
Sbjct: 180 FKPLDAQDIAKRLEFIAADQTVALEPGVIDALVSVSGGDMRKAITFLQSAATLHQGTPVT 239
Query: 253 NEDVLEVTGVIPKPWIEKLLKVD---SFQVLEKYIEDLILEAYSATQLFDQFHDIVMLAS 309
V+E++G IP I++LL V +E E + +S L Q HD VM
Sbjct: 240 VNTVIEISGRIPDDVIQELLDVSKSKDISKIESVAETVTANGFSTGLLLSQLHDKVMADE 299
Query: 310 SL--SDKQKALFKALE 323
S+ + K K L K E
Sbjct: 300 SIPSNSKHKILLKMSE 315
Score = 89.4 bits (220), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVD---SF 378
++ LV SGGDMR+AIT LQS A L G + V+E++G IP+ I++LL V
Sbjct: 208 IDALVSVSGGDMRKAITFLQSAATLHQGTPVTVNTVIEISGRIPDDVIQELLDVSKSKDI 267
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
+E E + +S L Q HD VM+ S+ K IL K++E + L DGA EY
Sbjct: 268 SKIESVAETVTANGFSTGLLLSQLHDKVMADESIPSNSKHKILLKMSEVDKCLTDGADEY 327
Query: 439 IQILDL 444
+Q+LD+
Sbjct: 328 LQLLDM 333
>gi|398365131|ref|NP_012602.3| Rfc2p [Saccharomyces cerevisiae S288c]
gi|730502|sp|P40348.1|RFC2_YEAST RecName: Full=Replication factor C subunit 2; Short=Replication
factor C2; AltName: Full=Activator 1 41 kDa subunit
gi|498463|dbj|BAA05858.1| Rfc2 protein [Saccharomyces cerevisiae]
gi|841464|gb|AAC49061.1| Rfc2p [Saccharomyces cerevisiae]
gi|1015747|emb|CAA89596.1| RFC2 [Saccharomyces cerevisiae]
gi|1019690|gb|AAB39294.1| ORF YJR068w [Saccharomyces cerevisiae]
gi|285812957|tpg|DAA08855.1| TPA: Rfc2p [Saccharomyces cerevisiae S288c]
gi|392298494|gb|EIW09591.1| Rfc2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 353
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 148/281 (52%), Positives = 194/281 (69%), Gaps = 11/281 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +D+V Q V+VLKK L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADSM 149
D+ + RILELNASD+RGI ++R+KVK FA+ T S + + PCPP+KI+ILDEADSM
Sbjct: 86 DLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L + + RL++I
Sbjct: 146 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFIS 205
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPK 265
EQE+V CD LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P
Sbjct: 206 EQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPH 265
Query: 266 P-WIEKLLKVDS--FQVLEKYIEDLILEAYSATQLFDQFHD 303
IE + KV S F ++KY+ + +SA + +Q H+
Sbjct: 266 DILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHE 306
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 73/130 (56%), Gaps = 7/130 (5%)
Query: 322 LETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPNP-WIEKLLKVD 376
LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P+ IE + KV
Sbjct: 217 LERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVK 276
Query: 377 S--FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
S F ++KY+ + +SA + +Q H+ ++ + K I L ++RL +G
Sbjct: 277 SGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNG 336
Query: 435 ASEYIQILDL 444
+E+IQ+L+L
Sbjct: 337 TNEHIQLLNL 346
>gi|323308474|gb|EGA61719.1| Rfc2p [Saccharomyces cerevisiae FostersO]
Length = 353
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 148/281 (52%), Positives = 194/281 (69%), Gaps = 11/281 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +D+V Q V+VLKK L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADSM 149
D+ + RILELNASD+RGI ++R+KVK FA+ T S + + PCPP+KI+ILDEADSM
Sbjct: 86 DLMKSRILELNASDERGISIVREKVKIFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L + + RL++I
Sbjct: 146 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFIS 205
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPK 265
EQE+V CD LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P
Sbjct: 206 EQENVKCDDGVLEXILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAGVVPH 265
Query: 266 P-WIEKLLKVDS--FQVLEKYIEDLILEAYSATQLFDQFHD 303
IE + KV S F ++KY+ + +SA + +Q H+
Sbjct: 266 DILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHE 306
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 73/130 (56%), Gaps = 7/130 (5%)
Query: 322 LETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPNP-WIEKLLKVD 376
LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P+ IE + KV
Sbjct: 217 LEXILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVK 276
Query: 377 S--FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
S F ++KY+ + +SA + +Q H+ ++ + K I L ++RL +G
Sbjct: 277 SGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNG 336
Query: 435 ASEYIQILDL 444
+E+IQ+L+L
Sbjct: 337 TNEHIQLLNL 346
>gi|45269731|gb|AAS56246.1| YJR068W [Saccharomyces cerevisiae]
Length = 353
Score = 294 bits (753), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 148/281 (52%), Positives = 194/281 (69%), Gaps = 11/281 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +D+V Q V+VLKK L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADSM 149
D+ + RILELNASD+RGI ++R+KVK FA+ T S + + PCPP+KI+ILDEADSM
Sbjct: 86 DLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L + + RL++I
Sbjct: 146 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFIS 205
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPK 265
EQE+V CD LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P
Sbjct: 206 EQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPH 265
Query: 266 P-WIEKLLKVDS--FQVLEKYIEDLILEAYSATQLFDQFHD 303
IE + KV S F ++KY+ + +SA + +Q H+
Sbjct: 266 DILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHE 306
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 73/130 (56%), Gaps = 7/130 (5%)
Query: 322 LETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPNP-WIEKLLKVD 376
LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P+ IE + KV
Sbjct: 217 LERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVK 276
Query: 377 S--FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
S F ++KY+ + +SA + +Q H+ ++ + K I L ++RL +G
Sbjct: 277 SGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNG 336
Query: 435 ASEYIQILDL 444
+E+IQ+L+L
Sbjct: 337 TNEHIQLLNL 346
>gi|50287127|ref|XP_445993.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525300|emb|CAG58917.1| unnamed protein product [Candida glabrata]
Length = 352
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 147/286 (51%), Positives = 195/286 (68%), Gaps = 10/286 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +DDV Q VV+VLKK LS A+LPH LFYGPPGTGKTST++A +LFG
Sbjct: 26 PWVEKYRPKKLDDVAAQDHVVNVLKKTLSSANLPHMLFYGPPGTGKTSTILALTKELFGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADSM 149
++ + R+LELNASD+RGI ++R+KVK FA+ T S + + CPP+KI+ILDEADSM
Sbjct: 86 ELMKTRVLELNASDERGISIVREKVKNFARLTVSKPSKHDLENYLCPPYKIIILDEADSM 145
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L + L RL+Y+
Sbjct: 146 TADAQSALRRTMETYSTVTRFCLICNYVTRIIDPLASRCSKFRFKSLDSSNALQRLKYVA 205
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG---IVNEDVLEVTGVIPKP 266
E+E V +LET+++ S GD+RRAIT LQS ++ G G + E V E+ V+P+
Sbjct: 206 EEEGVKVKAGSLETILDISAGDLRRAITLLQSASKNIGYSGEDEVSKELVEELAAVVPES 265
Query: 267 WIEK---LLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLAS 309
I++ L+ F + +YI++ +SA + Q HD + +S
Sbjct: 266 SIKQIVELVATRDFNKISEYIQEFTRNGWSAASVVSQLHDYYIKSS 311
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 72/130 (55%), Gaps = 6/130 (4%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEG---IVNEDVLEVTGVIPNPWIEK---LLK 374
+LET+++ S GD+RRAIT LQS ++ G G + E V E+ V+P I++ L+
Sbjct: 216 SLETILDISAGDLRRAITLLQSASKNIGYSGEDEVSKELVEELAAVVPESSIKQIVELVA 275
Query: 375 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
F + +YI++ +SA + Q HD + +S K + L + +++L +G
Sbjct: 276 TRDFNKISEYIQEFTRNGWSAASVVSQLHDYYIKSSEYDTAFKNKVSIILFDTDSKLTNG 335
Query: 435 ASEYIQILDL 444
+E+IQ+L++
Sbjct: 336 TNEHIQLLNM 345
>gi|328860731|gb|EGG09836.1| hypothetical protein MELLADRAFT_47409 [Melampsora larici-populina
98AG31]
Length = 382
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 151/319 (47%), Positives = 200/319 (62%), Gaps = 33/319 (10%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK I+ V Q VL K L ADLPH LFYGPPGTGKTST++A +LFG
Sbjct: 30 LPWVEKYRPKNIESVEGQDATTRVLAKTLHRADLPHMLFYGPPGTGKTSTILALARELFG 89
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++ + R+LELNASD+RGI V+RDK+K+FA+ + S + PCPPFKI+ILDEADSMT
Sbjct: 90 PELMKSRVLELNASDERGISVVRDKIKSFAKVSISPAT-NAYPCPPFKIIILDEADSMTQ 148
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ+ALRR ME +K TRFCLICNYV+ II+P+ SRCSKFRF PL+ L+RL IC
Sbjct: 149 DAQSALRRIMENYSKITRFCLICNYVTRIIEPIVSRCSKFRFTPLSSTDTLSRLNEICRL 208
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG-------IVNEDVLEVTGVIP 264
E+V L +L++ S GD+RR+IT LQS ++L+ G I EDV E+ GVIP
Sbjct: 209 ENVKVAEPVLASLIKVSDGDLRRSITFLQSASKLRNGSSADDEAGEITQEDVEEIGGVIP 268
Query: 265 KPWIEKLLKV------------------------DSFQVLEKYIEDLILEAYSATQLFDQ 300
I KL+K F+ + + +E L+ + YS+ QL Q
Sbjct: 269 DTEIRKLMKTMGIDVEADGDVTMADGNTRGKTRQTPFEKIAEAVELLMRQGYSSVQLISQ 328
Query: 301 FHDIVMLASSLSDKQKALF 319
HD+++L + + + K +
Sbjct: 329 LHDLILLDTLIPPRCKTMI 347
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 94/194 (48%), Gaps = 36/194 (18%)
Query: 293 SATQLFDQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEG- 351
S+T + ++I L + K L +L++ S GD+RR+IT LQS ++L+ G
Sbjct: 194 SSTDTLSRLNEICRL-----ENVKVAEPVLASLIKVSDGDLRRSITFLQSASKLRNGSSA 248
Query: 352 ------IVNEDVLEVTGVIPNPWIEKLLKV------------------------DSFQVL 381
I EDV E+ GVIP+ I KL+K F+ +
Sbjct: 249 DDEAGEITQEDVEEIGGVIPDTEIRKLMKTMGIDVEADGDVTMADGNTRGKTRQTPFEKI 308
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
+ +E L+ + YS+ QL Q HD+++ + + + K +I L E + RL DGA E +Q+
Sbjct: 309 AEAVELLMRQGYSSVQLISQLHDLILLDTLIPPRCKTMISIALGETDKRLNDGAEEELQV 368
Query: 442 LDLGSIVIKANKTA 455
L L + KA +++
Sbjct: 369 LSLCLKIWKAMQSS 382
>gi|323304258|gb|EGA58032.1| Rfc2p [Saccharomyces cerevisiae FostersB]
Length = 348
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 148/281 (52%), Positives = 194/281 (69%), Gaps = 11/281 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +D+V Q V+VLKK L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADSM 149
D+ + RILELNASD+RGI ++R+KVK FA+ T S + + PCPP+KI+ILDEADSM
Sbjct: 86 DLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L + + RL++I
Sbjct: 146 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFIS 205
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPK 265
EQE+V CD LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P
Sbjct: 206 EQENVKCDDGVLERILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAGVVPH 265
Query: 266 P-WIEKLLKVDS--FQVLEKYIEDLILEAYSATQLFDQFHD 303
IE + KV S F ++KY+ + +SA + +Q H+
Sbjct: 266 DILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHE 306
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 7/98 (7%)
Query: 322 LETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPNP-WIEKLLKVD 376
LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P+ IE + KV
Sbjct: 217 LERILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVK 276
Query: 377 S--FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL 412
S F ++KY+ + +SA + +Q H+ ++ +
Sbjct: 277 SGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNF 314
>gi|365981921|ref|XP_003667794.1| hypothetical protein NDAI_0A03940 [Naumovozyma dairenensis CBS 421]
gi|343766560|emb|CCD22551.1| hypothetical protein NDAI_0A03940 [Naumovozyma dairenensis CBS 421]
Length = 354
Score = 294 bits (752), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 153/314 (48%), Positives = 206/314 (65%), Gaps = 19/314 (6%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
E F +T K D SS +++ S PWVEKYRPK +DD+ Q VSVLKK
Sbjct: 2 FEGFNKTKKRKLDNTESSSSALHQSK-------PWVEKYRPKQLDDITAQGHAVSVLKKT 54
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
L A+LPH LFYGPPGTGKTST++A +L+G ++ + RILELNASD+RGI ++R+KVK
Sbjct: 55 LQSANLPHMLFYGPPGTGKTSTILALAKELYGPELMKSRILELNASDERGISIVREKVKN 114
Query: 120 FAQQTASGFNQD---GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
FA+ T S +++ PCPP+KI+ILDEADSMT AQ+ALRRTME + TRFCLICNY
Sbjct: 115 FARLTVSKPSKNDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNY 174
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
V+ II PL SRCSKFRFKPL + RL+Y+ +ESV D ++ +++ S GD+RRAI
Sbjct: 175 VTRIIDPLASRCSKFRFKPLDATNSIGRLEYVAREESVQYDDDVMKCILDISEGDLRRAI 234
Query: 237 TCLQSCAR---LKGGEGIVNEDVLEVTGVIP----KPWIEKLLKVDSFQVLEKYIEDLIL 289
T LQS ++ G + + + V E+ GVIP + I+K+ K D + +E Y+ + I
Sbjct: 235 TLLQSASKRILYTGEKQVTSASVKELAGVIPDDVFQVVIDKVSKNDVNETIE-YVNEFIK 293
Query: 290 EAYSATQLFDQFHD 303
+SA + +Q HD
Sbjct: 294 SGWSAASVINQLHD 307
Score = 66.2 bits (160), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 74/130 (56%), Gaps = 8/130 (6%)
Query: 322 LETLVETSGGDMRRAITCLQSCAR---LKGGEGIVNEDVLEVTGVIPNPW----IEKLLK 374
++ +++ S GD+RRAIT LQS ++ G + + + V E+ GVIP+ I+K+ K
Sbjct: 219 MKCILDISEGDLRRAITLLQSASKRILYTGEKQVTSASVKELAGVIPDDVFQVVIDKVSK 278
Query: 375 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
D + +E Y+ + I +SA + +Q HD ++ + K + L E +++L +G
Sbjct: 279 NDVNETIE-YVNEFIKSGWSAASVINQLHDYYITNDEFNSDFKNKVSLILFEMDSKLANG 337
Query: 435 ASEYIQILDL 444
+E+IQ+L+L
Sbjct: 338 TNEHIQLLNL 347
>gi|401837599|gb|EJT41507.1| RFC2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 353
Score = 294 bits (752), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 145/289 (50%), Positives = 191/289 (66%), Gaps = 11/289 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +D+V Q V VLKK L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVKVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADSM 149
++ + RILELNASD+RGI ++R+KVK FA+ T S + + PCPP+KI+ILDEADSM
Sbjct: 86 ELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L N + RL+YI
Sbjct: 146 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSNNAIDRLRYIS 205
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPK 265
EQE+V CD LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P
Sbjct: 206 EQENVKCDSGVLERILDISAGDLRRGITLLQSASKKAQYLGDGKNITSTQVEELAGVVPH 265
Query: 266 PWIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSL 311
+ K+ ++ F + Y+ + +SA + +Q H + S
Sbjct: 266 DVLMKITDKVRGGDFDEINTYVNTFMKNGWSAASVVNQLHQYYITNDSF 314
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 7/130 (5%)
Query: 322 LETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPNPWIEKL---LK 374
LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P+ + K+ ++
Sbjct: 217 LERILDISAGDLRRGITLLQSASKKAQYLGDGKNITSTQVEELAGVVPHDVLMKITDKVR 276
Query: 375 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
F + Y+ + +SA + +Q H ++ S K I L +++L +G
Sbjct: 277 GGDFDEINTYVNTFMKNGWSAASVVNQLHQYYITNDSFDTNFKNQISWLLFTTDSKLNNG 336
Query: 435 ASEYIQILDL 444
+E+IQ+L+L
Sbjct: 337 TNEHIQLLNL 346
>gi|365759876|gb|EHN01638.1| Rfc2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 353
Score = 293 bits (751), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 145/289 (50%), Positives = 191/289 (66%), Gaps = 11/289 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +D+V Q V VLKK L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVKVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADSM 149
++ + RILELNASD+RGI ++R+KVK FA+ T S + + PCPP+KI+ILDEADSM
Sbjct: 86 ELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L N + RL+YI
Sbjct: 146 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSNNAIDRLRYIS 205
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPK 265
EQE+V CD LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P
Sbjct: 206 EQENVKCDSGVLERILDISAGDLRRGITLLQSASKKAQYLGDGKNITSTQVEELAGVVPH 265
Query: 266 PWIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSL 311
+ K+ ++ F + Y+ + +SA + +Q H + S
Sbjct: 266 DVLMKITDKVRGGDFDEINTYVNTFMKSGWSAASVVNQLHQYYITNDSF 314
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 69/130 (53%), Gaps = 7/130 (5%)
Query: 322 LETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPNPWIEKL---LK 374
LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P+ + K+ ++
Sbjct: 217 LERILDISAGDLRRGITLLQSASKKAQYLGDGKNITSTQVEELAGVVPHDVLMKITDKVR 276
Query: 375 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
F + Y+ + +SA + +Q H ++ S K I L +++L +G
Sbjct: 277 GGDFDEINTYVNTFMKSGWSAASVVNQLHQYYITNDSFDTNFKNQISWLLFTTDSKLNNG 336
Query: 435 ASEYIQILDL 444
+E+IQ+L+L
Sbjct: 337 TNEHIQLLNL 346
>gi|146414968|ref|XP_001483454.1| hypothetical protein PGUG_04183 [Meyerozyma guilliermondii ATCC
6260]
Length = 347
Score = 293 bits (751), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 147/294 (50%), Positives = 196/294 (66%), Gaps = 11/294 (3%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
R + PWVEKYRPK +DDV Q V+VLKK L A+LPH LFYGPPGTGKTST++A
Sbjct: 16 RLEHTPWVEKYRPKNLDDVASQDHAVNVLKKSLVSANLPHMLFYGPPGTGKTSTVLALAR 75
Query: 89 QLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQT---ASGFNQDGKPCPPFKIVILD 144
+L+G D+ + R+LELNASD+RGI ++R KVK FA+ T AS + + PCPP+K++ILD
Sbjct: 76 ELYGPDLIKSRVLELNASDERGIAIVRQKVKNFARLTVSNASPEDLEKYPCPPYKLIILD 135
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EADSMT+ AQAALRRTME + TRFCLICNY++ II PL RCSKFRFKPLA + + R
Sbjct: 136 EADSMTYDAQAALRRTMETYSGVTRFCLICNYITRIIDPLALRCSKFRFKPLANDNAVQR 195
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG----GEGIVNEDVLEVT 260
L+YI +QE + D L+ S GD+RRAIT LQS ARL I + E+
Sbjct: 196 LRYIVQQEELNVDEDVFSYLLTISNGDLRRAITYLQSAARLASTTTEETTISAATLREIA 255
Query: 261 GVIPKPWIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSL 311
GV+P+ ++ L L+ + + DL+L+ + A Q+ DQ H++ + + S+
Sbjct: 256 GVVPEEQLKILHNTLEDKDVSAITSVVGDLVLQGWGAQQVLDQLHELYVHSDSI 309
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 63/122 (51%), Gaps = 7/122 (5%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTGVIPNPWIEKL---LKVDS 377
L+ S GD+RRAIT LQS ARL I + E+ GV+P ++ L L+
Sbjct: 215 LLTISNGDLRRAITYLQSAARLASTTTEETTISAATLREIAGVVPEEQLKILHNTLEDKD 274
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
+ + DL+L+ + A Q+ DQ H++ + + S+ + K + E + RL +GA E
Sbjct: 275 VSAITSVVGDLVLQGWGAQQVLDQLHELYVHSDSILTETKNRAARLMFETDRRLNNGADE 334
Query: 438 YI 439
++
Sbjct: 335 HL 336
>gi|164658640|ref|XP_001730445.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966]
gi|159104341|gb|EDP43231.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966]
Length = 353
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 149/308 (48%), Positives = 201/308 (65%), Gaps = 26/308 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVE+YRPK+ID+V QQ V+VL+K L+ A+LPH LFYGPPGTGKTST++A QL+G
Sbjct: 8 PWVERYRPKSIDEVASQQHAVNVLRKALTSANLPHMLFYGPPGTGKTSTILALARQLYGP 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ R R+LELNASD+RGI V+RDK+K+FA+ S N D P PP+KIVILDEADSMT
Sbjct: 68 ELMRSRVLELNASDERGISVVRDKIKSFARAAVSAPNPD-YPSPPYKIVILDEADSMTQD 126
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR ME+ ++ TRFCL+CNYV+ II+P+ SRCSKFRF+PL + RL +I + E
Sbjct: 127 AQGALRRIMEQYSRITRFCLVCNYVTRIIEPVASRCSKFRFRPLDVASTEARLLHIAQME 186
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-----VLEVTGVIPKPW 267
+ + + L+ +S GDMRR+IT LQS ARL G D V E+ G +P
Sbjct: 187 GLRLNPDLVPVLIRSSEGDMRRSITYLQSIARLASARGGDVRDMSPTTVSELAGAVPTYV 246
Query: 268 IEKLLK---VDS----------------FQVLEKYIEDLILEAYSATQLFDQFHDIVMLA 308
I+ L++ +DS F V+E+ + ++ E YS+ Q+ Q HD ++
Sbjct: 247 IQSLVRAIGIDSDDINDELPPRATGSTDFDVIERAVRHVVREGYSSLQVVLQLHDYIISH 306
Query: 309 SSLSDKQK 316
LS K+K
Sbjct: 307 PLLSAKRK 314
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 66/140 (47%), Gaps = 24/140 (17%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-----VLEVTGVIPNPWIEKLLK-- 374
+ L+ +S GDMRR+IT LQS ARL G D V E+ G +P I+ L++
Sbjct: 195 VPVLIRSSEGDMRRSITYLQSIARLASARGGDVRDMSPTTVSELAGAVPTYVIQSLVRAI 254
Query: 375 -VDS----------------FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQK 417
+DS F V+E+ + ++ E YS+ Q+ Q HD ++S LS K+K
Sbjct: 255 GIDSDDINDELPPRATGSTDFDVIERAVRHVVREGYSSLQVVLQLHDYIISHPLLSAKRK 314
Query: 418 ALILEKLAECNARLQDGASE 437
L + L DG E
Sbjct: 315 TKCALHLGATDKSLMDGGEE 334
>gi|303274701|ref|XP_003056666.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461018|gb|EEH58311.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 331
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 146/289 (50%), Positives = 194/289 (67%), Gaps = 5/289 (1%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPWVEKYRP+ I DV Q+EVV L+K L A++PH LFYGPPGTGKT+ +A C QL+G
Sbjct: 7 VPWVEKYRPRKIGDVSHQEEVVRTLQKALETANMPHMLFYGPPGTGKTTCALAICRQLYG 66
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
D+++ R+LELNASD+RGI V+R+K+K FA TA G G PCPP+KI+ILDEADSMT
Sbjct: 67 PDLFKSRVLELNASDERGISVVRNKIKGFAS-TAVGQAVPGYPCPPYKILILDEADSMTT 125
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ+ALRRTME +K TRF ++CNYVS II+P+ SRC+KFRFKPL M RL++I E+
Sbjct: 126 DAQSALRRTMETHSKVTRFFILCNYVSRIIEPIASRCAKFRFKPLGSEVMSDRLKHIAER 185
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL 271
E + + + SGGDMR+AIT LQS ARL G + + ED++ V G I + + +L
Sbjct: 186 EGLTLGEGVYDAAAKHSGGDMRKAITLLQSSARLFGAKELTGEDIIAVAGAIAEDDVAEL 245
Query: 272 LKVDSFQVLEKYIEDL---ILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
L + ++ I L + + + Q+ QF D V + + SD KA
Sbjct: 246 LDLCGKNAFDRAIGKLDVMLRDGFPGLQILTQFADAVTNSENCSDGVKA 294
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 6/123 (4%)
Query: 329 SGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDL 388
SGGDMR+AIT LQS ARL G + + ED++ V G I + +LL + ++ I L
Sbjct: 202 SGGDMRKAITLLQSSARLFGAKELTGEDIIAVAGAIAEDDVAELLDLCGKNAFDRAIGKL 261
Query: 389 ---ILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 445
+ + + Q+ QF D V ++ + SD KA I AE + L DG+ + +Q LG
Sbjct: 262 DVMLRDGFPGLQILTQFADAVTNSENCSDGVKARICLAAAEADKALIDGSDDSLQ---LG 318
Query: 446 SIV 448
++V
Sbjct: 319 AVV 321
>gi|156849229|ref|XP_001647495.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM
70294]
gi|156118181|gb|EDO19637.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM
70294]
Length = 350
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 144/281 (51%), Positives = 197/281 (70%), Gaps = 12/281 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +DDV Q+ V+VLK+ L A+LPH LFYGPPGTGKTST++A +LFG
Sbjct: 23 PWVEKYRPKKLDDVAAQEHAVTVLKRTLGSANLPHMLFYGPPGTGKTSTILALTKELFGP 82
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG---KPCPPFKIVILDEADSM 149
++ + R+LELNASD+RGI ++R+KVK FA+ T S +++ PCPP+KI+ILDEADSM
Sbjct: 83 NLIKSRVLELNASDERGISIVREKVKNFARLTVSKPSKEDLEKYPCPPYKIIILDEADSM 142
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L E L RL+++
Sbjct: 143 TADAQSALRRTMETYSNITRFCLICNYVTRIIDPLASRCSKFRFKALDETNALDRLKFVA 202
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPK 265
++E+V LE ++E S GD+RRAIT LQS ++ + E VN V E+ GV+P
Sbjct: 203 QEENVNYKENVLEKILEISSGDLRRAITLLQSASKTSTYTENSEITVNL-VEELAGVVPS 261
Query: 266 PWIEKLLKVDSFQVLE---KYIEDLILEAYSATQLFDQFHD 303
P + ++++V S + ++ KY++ I +S T + +Q H+
Sbjct: 262 PALNEIIEVVSSKNIDAVTKYLDKFIRNGWSGTSVVNQLHN 302
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 78/130 (60%), Gaps = 8/130 (6%)
Query: 322 LETLVETSGGDMRRAITCLQSCARL----KGGEGIVNEDVLEVTGVIPNPWIEKLLKVDS 377
LE ++E S GD+RRAIT LQS ++ + E VN V E+ GV+P+P + ++++V S
Sbjct: 214 LEKILEISSGDLRRAITLLQSASKTSTYTENSEITVNL-VEELAGVVPSPALNEIIEVVS 272
Query: 378 FQVLE---KYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
+ ++ KY++ I +S T + +Q H+ +++ S K + L E +++L +G
Sbjct: 273 SKNIDAVTKYLDKFIRNGWSGTSVVNQLHNHYITSEDYSADFKNKVSWILFETDSKLNNG 332
Query: 435 ASEYIQILDL 444
+E+IQ+L+L
Sbjct: 333 TNEHIQLLNL 342
>gi|324508707|gb|ADY43673.1| Replication factor C subunit 4 [Ascaris suum]
Length = 354
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 146/291 (50%), Positives = 197/291 (67%), Gaps = 7/291 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPWVEKYRP+ +DD++ Q EVVSVLKK L GADLP+ LFYGPPGTGKTS +A C +LF
Sbjct: 29 VPWVEKYRPRKVDDIVFQDEVVSVLKKVLKGADLPNLLFYGPPGTGKTSAAVALCRELFK 88
Query: 93 --DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
D+Y +R+LE+NASD+RGI ++R ++K FA++ S DG K++ILDEAD+MT
Sbjct: 89 NPDVYSDRVLEMNASDERGINIVRTRIKEFARRAVSSRLPDGSHVLGLKVIILDEADAMT 148
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AAQAALRRTMEKE++STRF LICNY+S II PLTSRC+KFRFKPL+ + RL+YICE
Sbjct: 149 DAAQAALRRTMEKESRSTRFFLICNYISRIIPPLTSRCAKFRFKPLSLESQKERLEYICE 208
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEK 270
QE V + AL L+E GGD+RR++T LQ+ + + +V ++G +P + +
Sbjct: 209 QEDVEVEQAALIELIELCGGDLRRSVTHLQTMSSCHT--KLTPSEVRHLSGAVPDSVVRE 266
Query: 271 LLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKAL 318
LL V +F + Y+E + E Y QL Q +++ L D K++
Sbjct: 267 LLAVCERVNFDEMFAYVESIRREGYGVYQLMTQLFSLILHNKELLDTHKSV 317
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 80/139 (57%), Gaps = 5/139 (3%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
AL L+E GGD+RR++T LQ+ + + +V ++G +P+ + +LL V +
Sbjct: 218 ALIELIELCGGDLRRSVTHLQTMSSCHTK--LTPSEVRHLSGAVPDSVVRELLAVCERVN 275
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
F + Y+E + E Y QL Q +++ L D K++I EK+AEC RL DGA E
Sbjct: 276 FDEMFAYVESIRREGYGVYQLMTQLFSLILHNKELLDTHKSVIFEKMAECEVRLLDGADE 335
Query: 438 YIQILDLGSIVIKANKTAV 456
++Q+LDL +++++ KT V
Sbjct: 336 FLQLLDLSAVILEQYKTVV 354
>gi|346321024|gb|EGX90624.1| activator 1 41 kDa subunit [Cordyceps militaris CM01]
Length = 382
Score = 293 bits (750), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 149/312 (47%), Positives = 203/312 (65%), Gaps = 30/312 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK++DD+ Q+ V+VL++ L A+LPH LFYGPPGTGKTST++A QL+G
Sbjct: 34 PWVEKYRPKSLDDIAAQEHTVTVLQRTLQAANLPHMLFYGPPGTGKTSTILALAKQLYGP 93
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ----QTASGFNQDGKPCPPFKIVILDEADS 148
+M + R+LELNASD+RGI ++RDKVK FA+ +G+ +D PCPPFKI+ILDEADS
Sbjct: 94 EMMKSRVLELNASDERGISIVRDKVKNFARMQLTNPPAGY-RDKYPCPPFKIIILDEADS 152
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK L + + RL+ I
Sbjct: 153 MTQDAQSALRRTMEIYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGSAKKRLEEI 212
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG-----------------EGI 251
ESV D A++ L+ S GD+R+A+T LQS ARL G + I
Sbjct: 213 ATAESVPVDDGAIDALIRCSEGDLRKAVTFLQSAARLVGAGAQPKDSDGDDDMEVDKKAI 272
Query: 252 VNEDVLEVTGVIPKPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDI 304
+ + ++ GVIP I++L+ S+ + K +ED++ + +SA Q+ Q + +
Sbjct: 273 TVKIIEDIAGVIPSKTIDELVAALRPRGSNGSYAGVSKVVEDMVADGWSAGQVVSQLYQV 332
Query: 305 VMLASSLSDKQK 316
V ++ D QK
Sbjct: 333 VTFDETIPDVQK 344
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 24/148 (16%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGG-----------------EGIVNEDVLEVTGV 363
A++ L+ S GD+R+A+T LQS ARL G + I + + ++ GV
Sbjct: 224 AIDALIRCSEGDLRKAVTFLQSAARLVGAGAQPKDSDGDDDMEVDKKAITVKIIEDIAGV 283
Query: 364 IPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQ 416
IP+ I++L+ S+ + K +ED++ + +SA Q+ Q + +V ++ D Q
Sbjct: 284 IPSKTIDELVAALRPRGSNGSYAGVSKVVEDMVADGWSAGQVVSQLYQVVTFDETIPDVQ 343
Query: 417 KALILEKLAECNARLQDGASEYIQILDL 444
K I+ +E + RL DGA E++ ILDL
Sbjct: 344 KNKIVMVFSEVDKRLLDGADEHLSILDL 371
>gi|348688417|gb|EGZ28231.1| hypothetical protein PHYSODRAFT_551952 [Phytophthora sojae]
Length = 339
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 149/307 (48%), Positives = 204/307 (66%), Gaps = 16/307 (5%)
Query: 20 TSVSTSGKTRNKPV-PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTG 78
++ STS PV PWVEKYRPK +D++ Q+ VV+ LK ++ LPH LFYGPPGTG
Sbjct: 3 STASTSKTNLPAPVLPWVEKYRPKNVDEISHQEHVVATLKTSIANGQLPHLLFYGPPGTG 62
Query: 79 KTSTMIAACHQLFGDMYRE--RILELNASDDRGIQVIRDKVKTFAQ---QTASGFNQDGK 133
KTST++A QLFG +R+ R LELNASDDRGI+V+R+KVK+FAQ +ASG
Sbjct: 63 KTSTIVAVGRQLFGPDFRKNGRFLELNASDDRGIKVVREKVKSFAQGAISSASGL----- 117
Query: 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
PPFKI++LDEADSMT AQ+ALRR ME +K TRFCLICNYVS II+P+ SRC+KFRF
Sbjct: 118 --PPFKIIVLDEADSMTGDAQSALRRMMENYSKVTRFCLICNYVSRIIEPVASRCAKFRF 175
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253
PL +M +R+++I +E V LE+L+E S GD+R+AI LQS +L G + +
Sbjct: 176 APLERGSMASRVRFIASEEHVNVPDPVLESLLECSNGDLRKAINYLQSAKQLCGDDELSQ 235
Query: 254 EDVLEVTGVIPKPWIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASS 310
+DV+ V G+ P +++ + +SF+ ++ IE ++L Y + Q +D V+
Sbjct: 236 DDVIAVAGLAPPELLKQFWVSVASNSFEKMKTDIESILLAGYPVLTILRQLNDDVLALDK 295
Query: 311 LSDKQKA 317
L+D QKA
Sbjct: 296 LNDVQKA 302
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 83/137 (60%), Gaps = 3/137 (2%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL---LKVDSF 378
LE+L+E S GD+R+AI LQS +L G + + +DV+ V G+ P +++ + +SF
Sbjct: 203 LESLLECSNGDLRKAINYLQSAKQLCGDDELSQDDVIAVAGLAPPELLKQFWVSVASNSF 262
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
+ ++ IE ++L Y + Q +D V++ L+D QKA I ++AE + RL DGASE+
Sbjct: 263 EKMKTDIESILLAGYPVLTILRQLNDDVLALDKLNDVQKAKISLRIAEADKRLVDGASEH 322
Query: 439 IQILDLGSIVIKANKTA 455
Q+LD+ S ++ +A
Sbjct: 323 FQLLDVASYAMRVYHSA 339
>gi|58270226|ref|XP_572269.1| activator 1 41 kda subunit [Cryptococcus neoformans var. neoformans
JEC21]
gi|134117646|ref|XP_772457.1| hypothetical protein CNBL0720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255071|gb|EAL17810.1| hypothetical protein CNBL0720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228527|gb|AAW44962.1| activator 1 41 kda subunit, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 363
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 151/309 (48%), Positives = 203/309 (65%), Gaps = 24/309 (7%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTIDDV Q V+VL+K L+ +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 19 PWVEKYRPKTIDDVSSQDNTVAVLRKALASTNLPHMLFYGPPGTGKTSTILALARQLFGP 78
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT---ASGFNQDGK--PCPPFKIVILDEAD 147
D++R R+LELNASD+RGI V+R+K+K+FA++T A + DGK PCPPFK++ILDEAD
Sbjct: 79 DLFRARVLELNASDERGISVVREKIKSFARETPRHAPAVSSDGKEYPCPPFKLIILDEAD 138
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
SMT AQ+ALRR ME +K TRFCL+CNYV+ II+PL SRCSKFRFKPL + + R++
Sbjct: 139 SMTQDAQSALRRIMETYSKITRFCLVCNYVTRIIEPLASRCSKFRFKPLEQGSTRARMEM 198
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG----EGIVNEDVLEVTGVI 263
I E E V D + ++E +GGD+R+AIT LQ+ RL + + E++GV+
Sbjct: 199 IAENEGVQTDPGVISLILELAGGDLRKAITYLQTAQRLHSSIEPPMPVSALSIHEISGVV 258
Query: 264 PKPWIEKLLK---VD-----------SFQVLEKYIEDLILEAYSATQLFDQFHDIVMLAS 309
P+ I LL VD F ++ + + E +S Q+ +Q HD ++
Sbjct: 259 PEDLITDLLAAMGVDRQTGIDHSLARGFDGVKIAVTRVEREGWSVGQVLEQIHDTLIPIP 318
Query: 310 SLSDKQKAL 318
S+ QK+L
Sbjct: 319 SIPAIQKSL 327
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 68/137 (49%), Gaps = 18/137 (13%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGG----EGIVNEDVLEVTGVIPNPWIEKLLK---VD- 376
++E +GGD+R+AIT LQ+ RL + + E++GV+P I LL VD
Sbjct: 215 ILELAGGDLRKAITYLQTAQRLHSSIEPPMPVSALSIHEISGVVPEDLITDLLAAMGVDR 274
Query: 377 ----------SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 426
F ++ + + E +S Q+ +Q HD ++ S+ QK+L +AE
Sbjct: 275 QTGIDHSLARGFDGVKIAVTRVEREGWSVGQVLEQIHDTLIPIPSIPAIQKSLAGIAIAE 334
Query: 427 CNARLQDGASEYIQILD 443
C+ L +G E +Q+LD
Sbjct: 335 CDKGLCEGGDEELQLLD 351
>gi|294846008|gb|ADF43166.1| RFC4m [Chlamydomonas reinhardtii]
Length = 332
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 145/277 (52%), Positives = 186/277 (67%), Gaps = 10/277 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + +V Q+EVV+ L + L A+LPH LFYGPPGTGKTST +A QL+G
Sbjct: 5 PWVEKYRPKNVSEVAYQEEVVNTLTRALETANLPHLLFYGPPGTGKTSTALAIARQLYGP 64
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ + R+LELNASD+RGI V+R+KVK FA TA G G PCPP+K++ILDEADSMT
Sbjct: 65 ELMKSRVLELNASDERGIHVVREKVKAFAA-TAVGAPVPGYPCPPYKLLILDEADSMTQD 123
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME ++ TRF ICNYVS II+PL SRC+KFRFKPL M R+++ICE+E
Sbjct: 124 AQNALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQPAIMAGRIEHICERE 183
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL- 271
SV AL+TL SGGD+RRAI LQS ARL G + +L+V+G + + L
Sbjct: 184 SVTLGPGALDTLSAVSGGDLRRAINTLQSAARLGAGH-VDRATLLDVSGQVAPEVVSSLA 242
Query: 272 ------LKVDSFQVLEKYIEDLILEAYSATQLFDQFH 302
F L+K ++++I E Y+A Q+ Q
Sbjct: 243 AACRATGAAGRFGALQKQVQNIIAEGYAAQQVLLQLQ 279
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 9/132 (6%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL-------L 373
AL+TL SGGD+RRAI LQS ARL G + +L+V+G + + L
Sbjct: 191 ALDTLSAVSGGDLRRAINTLQSAARLGAGH-VDRATLLDVSGQVAPEVVSSLAAACRATG 249
Query: 374 KVDSFQVLEKYIEDLILEAYSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECNARLQ 432
F L+K ++++I E Y+A Q+ Q +++ A SD + LE LA + L
Sbjct: 250 AAGRFGALQKQVQNIIAEGYAAQQVLLQLQAELLSGADGGSDLRLCGALEALAGADYSLV 309
Query: 433 DGASEYIQILDL 444
GA E +Q+L++
Sbjct: 310 VGADEALQLLNV 321
>gi|50513624|pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 147/281 (52%), Positives = 194/281 (69%), Gaps = 11/281 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +D+V Q V+VLKK L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADSM 149
D+ + RILELNASD+RGI ++R+KVK FA+ T S + + PCPP+KI+ILDEADSM
Sbjct: 86 DLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL S+CSKFRFK L + + RL++I
Sbjct: 146 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFIS 205
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPK 265
EQE+V CD LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P
Sbjct: 206 EQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPH 265
Query: 266 P-WIEKLLKVDS--FQVLEKYIEDLILEAYSATQLFDQFHD 303
IE + KV S F ++KY+ + +SA + +Q H+
Sbjct: 266 DILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHE 306
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 73/130 (56%), Gaps = 7/130 (5%)
Query: 322 LETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPNP-WIEKLLKVD 376
LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P+ IE + KV
Sbjct: 217 LERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVK 276
Query: 377 S--FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
S F ++KY+ + +SA + +Q H+ ++ + K I L ++RL +G
Sbjct: 277 SGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNG 336
Query: 435 ASEYIQILDL 444
+E+IQ+L+L
Sbjct: 337 TNEHIQLLNL 346
>gi|310790808|gb|EFQ26341.1| replication factor C [Glomerella graminicola M1.001]
Length = 383
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 156/334 (46%), Positives = 216/334 (64%), Gaps = 28/334 (8%)
Query: 11 GKDAPSSSKTSVSTSGKTRNKPV--PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH 68
+ A +++ TS K+ P PWVEKYRPKT+ DV Q V+VL++ L ++LPH
Sbjct: 9 ARKAAAANGTSAQKQEKSAQPPRAQPWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPH 68
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTAS 126
LFYGPPGTGKTST++A +L+G +M + R+LELNASD+RGI ++R+KVK FA+ Q +
Sbjct: 69 MLFYGPPGTGKTSTVLALAKELYGPEMIKSRVLELNASDERGISIVREKVKDFARMQLTN 128
Query: 127 GFNQDGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPL 184
N+ K PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL
Sbjct: 129 PTNEYKKRYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPL 188
Query: 185 TSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244
SRCSKFRFK L + RL I E E V + A++ L++ S GD+R+AIT LQS AR
Sbjct: 189 ASRCSKFRFKSLDQGNAKKRLGDIAENEGVQLEDGAVDALIKCSEGDLRKAITYLQSAAR 248
Query: 245 LKG-------GEGIVNED--------VLEVTGVIPKPWIEKLLK-------VDSFQVLEK 282
L G G+ ++ D V ++ GVIP+ I++L+ VD++Q + K
Sbjct: 249 LVGAGDKDTSGDDAMDVDKRPVTVKIVEDIAGVIPENTIDELVSAIRPQGTVDTYQTVAK 308
Query: 283 YIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ED++ + +SA Q+ Q + ++ ++ D QK
Sbjct: 309 VVEDMVADGWSAGQVVTQLYQSIVFDETIPDVQK 342
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 22/147 (14%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKG-------GEGIVNED--------VLEVTGVIP 365
A++ L++ S GD+R+AIT LQS ARL G G+ ++ D V ++ GVIP
Sbjct: 224 AVDALIKCSEGDLRKAITYLQSAARLVGAGDKDTSGDDAMDVDKRPVTVKIVEDIAGVIP 283
Query: 366 NPWIEKLLK-------VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKA 418
I++L+ VD++Q + K +ED++ + +SA Q+ Q + ++ ++ D QK
Sbjct: 284 ENTIDELVSAIRPQGTVDTYQTVAKVVEDMVADGWSAGQVVTQLYQSIVFDETIPDVQKN 343
Query: 419 LILEKLAECNARLQDGASEYIQILDLG 445
I+ +E + RL DGA E++ ILDL
Sbjct: 344 KIVLIFSEVDKRLVDGADEHLTILDLA 370
>gi|384252312|gb|EIE25788.1| putative replication factor C 37 kDa subunit [Coccomyxa
subellipsoidea C-169]
Length = 329
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 144/288 (50%), Positives = 198/288 (68%), Gaps = 6/288 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWV+KYRPK++++V Q+EVV L+K L A+LPH LFYGPPGTGKTST +A QL+G
Sbjct: 7 PWVDKYRPKSVNEVAHQEEVVHTLQKALESANLPHLLFYGPPGTGKTSTALAMARQLYGP 66
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ + R+ ELNASD+RGI V+R+K+K+FA T+ G G PCPPFK++ILDEAD+MT
Sbjct: 67 ELAKARVKELNASDERGINVVREKIKSFAA-TSVGQPVPGYPCPPFKLLILDEADAMTQD 125
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME +K TRF ICNYVS II+PL SRC+KFRF+PL M R+ +IC +E
Sbjct: 126 AQNALRRTMEAHSKVTRFIFICNYVSRIIEPLASRCAKFRFRPLHGGIMSARISHICNEE 185
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
V A+ETL + SGGD+R+AIT LQS RLKG + + + +L+V+G +P+ + LL
Sbjct: 186 GVQLQEGAMETLGKVSGGDLRKAITTLQSAVRLKGLQ-VEPQTLLDVSGAVPESVTQSLL 244
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
+ + ++ I D I + + A QL +F ++ +L D Q+A
Sbjct: 245 QACRTRTVSSVQAAITDAIADGWGAQQLLLEFQAGLLKDQTLKDPQRA 292
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 103/193 (53%), Gaps = 10/193 (5%)
Query: 268 IEKLLKVDSFQVLEKYIEDLI--LEAYSATQLFDQFHDIVMLA--SSLSDKQKALFK--A 321
+E KV F + Y+ +I L + A F H +M A S + +++ + A
Sbjct: 134 MEAHSKVTRFIFICNYVSRIIEPLASRCAKFRFRPLHGGIMSARISHICNEEGVQLQEGA 193
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSF 378
+ETL + SGGD+R+AIT LQS RLKG + + + +L+V+G +P + LL + +
Sbjct: 194 METLGKVSGGDLRKAITTLQSAVRLKGLQ-VEPQTLLDVSGAVPESVTQSLLQACRTRTV 252
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
++ I D I + + A QL +F ++ +L D Q+A I LAE + L DGA E+
Sbjct: 253 SSVQAAITDAIADGWGAQQLLLEFQAGLLKDQTLKDPQRARICTVLAEADKCLVDGADEF 312
Query: 439 IQILDLGSIVIKA 451
+Q+L + S+ +A
Sbjct: 313 LQLLHVASVAQQA 325
>gi|291244804|ref|XP_002742285.1| PREDICTED: replication factor C 4-like [Saccoglossus kowalevskii]
Length = 288
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 145/219 (66%), Positives = 176/219 (80%), Gaps = 3/219 (1%)
Query: 1 MEAFLRTG--KLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLK 58
M AFL+ G KL + K+ S SG ++ + PWVEKYRPK++D+V Q EVV+VLK
Sbjct: 1 MHAFLKGGGSKLKEKVDKEGKSGPSGSGGSKRQITPWVEKYRPKSVDEVAFQDEVVAVLK 60
Query: 59 KCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKV 117
K + G+DLP+ LFYGPPGTGKTST++A +LFG+ M+R R+LELNASD+RGI V+R+KV
Sbjct: 61 KSIEGSDLPNLLFYGPPGTGKTSTILAVARELFGNEMFRTRVLELNASDERGINVVREKV 120
Query: 118 KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYV 177
K FAQ +AS DGKPCPP+KI+ILDEADSMT AAQAALRRTMEKETK+TRFCLICNYV
Sbjct: 121 KRFAQLSASATRSDGKPCPPYKIIILDEADSMTGAAQAALRRTMEKETKTTRFCLICNYV 180
Query: 178 SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMC 216
S II PLTSRC+KFRFKPLA + +LTRL+ ICEQE+V C
Sbjct: 181 SRIIGPLTSRCAKFRFKPLATSILLTRLKGICEQENVNC 219
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 36/49 (73%)
Query: 402 FHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 450
HDI++ + +S KQK++I E+L + RL DGA EY+Q++DL +++++
Sbjct: 234 IHDIIVQKADISGKQKSIICERLGMVDKRLSDGADEYLQMMDLCTVIMQ 282
>gi|71003365|ref|XP_756363.1| hypothetical protein UM00216.1 [Ustilago maydis 521]
gi|46095800|gb|EAK81033.1| hypothetical protein UM00216.1 [Ustilago maydis 521]
Length = 384
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 151/303 (49%), Positives = 196/303 (64%), Gaps = 31/303 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTID+V Q+ V+VLKK L +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 30 PWVEKYRPKTIDEVAAQEHTVAVLKKTLLSNNLPHMLFYGPPGTGKTSTILALARQLFGP 89
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ + R+LELNASD+RGI V+R+K+K FA+ + ++G PCPPFKI+ILDEADSMT
Sbjct: 90 ELMKTRVLELNASDERGITVVREKIKNFAKLAVTN-PKEGFPCPPFKIIILDEADSMTQD 148
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRR ME+ ++ TRFCL+CNYV+ II+PL SRCSKFRF+ L ++ RL+ I E
Sbjct: 149 AQSALRRIMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFRSLDTSSTKARLEMIASAE 208
Query: 213 SV-MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG-----IVNEDVLEVTGVIPKP 266
SV D L+TL+ TS GD+RRAIT LQS +RL G I +E ++E+ GV+P
Sbjct: 209 SVAFRDSGVLDTLISTSDGDLRRAITYLQSASRLHSLTGEDKSAITSESIVEIAGVVPNR 268
Query: 267 WIEKLL-----------------------KVDSFQVLEKYIEDLILEAYSATQLFDQFHD 303
I L K D+F+ + + + E YS TQL Q HD
Sbjct: 269 VIASLADAIGIEAYSPDDDVEMQPTGGAKKRDTFERIRDEVRIITREGYSITQLLLQLHD 328
Query: 304 IVM 306
V+
Sbjct: 329 HVI 331
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 68/144 (47%), Gaps = 28/144 (19%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEG-----IVNEDVLEVTGVIPNPWIEKLL--- 373
L+TL+ TS GD+RRAIT LQS +RL G I +E ++E+ GV+PN I L
Sbjct: 218 LDTLISTSDGDLRRAITYLQSASRLHSLTGEDKSAITSESIVEIAGVVPNRVIASLADAI 277
Query: 374 --------------------KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLS 413
K D+F+ + + + E YS TQL Q HD V+ +
Sbjct: 278 GIEAYSPDDDVEMQPTGGAKKRDTFERIRDEVRIITREGYSITQLLLQLHDHVIGHPTSQ 337
Query: 414 DKQKALILEKLAECNARLQDGASE 437
K KA +AE + L DGA E
Sbjct: 338 AKIKAKAALLMAEMDKSLTDGADE 361
>gi|5263320|gb|AAD41422.1|AC007727_11 Similar to gb|M87339 replication factor C, 37-kDa subunit from Homo
sapiens and is a member of PF|00004 ATPases associated
with various cellular activities [Arabidopsis thaliana]
Length = 319
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 155/301 (51%), Positives = 191/301 (63%), Gaps = 29/301 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q+EVV VL L AD PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y+ R+LELNASDDRGI V+R K+K FA S Q G PCP FKI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M R+ +IC +
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL 271
E + D +AL TL S GD+RRAIT LQ V+P + KL
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQ---------------------VVPLEVVNKL 228
Query: 272 L---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLA-SSLSDKQKALFKALETLVE 327
K F + K +++++ E Y A+Q+ +Q DIV A S ++D QKA K + L E
Sbjct: 229 FTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKA--KICKCLAE 286
Query: 328 T 328
T
Sbjct: 287 T 287
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 72/136 (52%), Gaps = 25/136 (18%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
+AL TL S GD+RRAIT LQ V+P + KL K
Sbjct: 197 EALSTLSSISQGDLRRAITYLQ---------------------VVPLEVVNKLFTACKSG 235
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASS-LSDKQKALILEKLAECNARLQDGA 435
F + K +++++ E Y A+Q+ +Q DIV A S ++D QKA I + LAE + RL DGA
Sbjct: 236 DFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDKRLVDGA 295
Query: 436 SEYIQILDLGSIVIKA 451
EY+Q+LD+ S I A
Sbjct: 296 DEYLQLLDVASSTICA 311
>gi|342876153|gb|EGU77811.1| hypothetical protein FOXB_11675 [Fusarium oxysporum Fo5176]
Length = 382
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 156/334 (46%), Positives = 213/334 (63%), Gaps = 42/334 (12%)
Query: 12 KDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLF 71
+D PS+++T PWVEKYRPKT+ DV Q V VL++ L ++LPH LF
Sbjct: 24 QDKPSNARTQ------------PWVEKYRPKTLSDVTAQDHTVDVLQRTLQSSNLPHMLF 71
Query: 72 YGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ----QTAS 126
YGPPGTGKTST++A +L+G DM + R+LELNASD+RGI ++R+KVK FA+ A
Sbjct: 72 YGPPGTGKTSTVLALAKELYGPDMIKSRVLELNASDERGISIVREKVKNFARMQLTNPAP 131
Query: 127 GFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186
G+ +D PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL S
Sbjct: 132 GY-KDKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLAS 190
Query: 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL- 245
RCSKFRFK L ++ RL+ I E+E V + A++ L++ S GD+R+AIT LQS ARL
Sbjct: 191 RCSKFRFKSLDQSNAKRRLEEIAEKEGVALEDGAVDALIKCSEGDLRKAITFLQSAARLV 250
Query: 246 ------KGGEG--IVNED--------VLEVTGVIPKPWIEKLLKV-------DSFQVLEK 282
K EG +++ D V ++ GVIP I+ L+K S+Q++
Sbjct: 251 SANAPDKEAEGDEVMDVDKKAVTVKIVEDIAGVIPDTTIDDLVKAIRPKRSGSSYQIISD 310
Query: 283 YIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+E L+ + +SA Q+ +Q + + ++ D QK
Sbjct: 311 VVEKLVADGWSAGQVVNQLYQALTYDETIPDAQK 344
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 82/149 (55%), Gaps = 24/149 (16%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARL-------KGGEG--IVNED--------VLEVTGV 363
A++ L++ S GD+R+AIT LQS ARL K EG +++ D V ++ GV
Sbjct: 224 AVDALIKCSEGDLRKAITFLQSAARLVSANAPDKEAEGDEVMDVDKKAVTVKIVEDIAGV 283
Query: 364 IPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQ 416
IP+ I+ L+K S+Q++ +E L+ + +SA Q+ +Q + + ++ D Q
Sbjct: 284 IPDTTIDDLVKAIRPKRSGSSYQIISDVVEKLVADGWSAGQVVNQLYQALTYDETIPDAQ 343
Query: 417 KALILEKLAECNARLQDGASEYIQILDLG 445
K I+ +E + RL DGA E++ ILDL
Sbjct: 344 KNKIVLVFSEVDKRLVDGADEHLSILDLS 372
>gi|301117462|ref|XP_002906459.1| replication factor C subunit 4 [Phytophthora infestans T30-4]
gi|262107808|gb|EEY65860.1| replication factor C subunit 4 [Phytophthora infestans T30-4]
Length = 339
Score = 291 bits (745), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 153/324 (47%), Positives = 211/324 (65%), Gaps = 21/324 (6%)
Query: 20 TSVSTSGKTRNKPV-PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTG 78
+S STS PV PWVEKYRPK +D++ Q+ VV+ LK ++ LPH LFYGPPGTG
Sbjct: 3 SSTSTSKTNVPAPVLPWVEKYRPKNVDEISHQEHVVATLKTSIANGQLPHLLFYGPPGTG 62
Query: 79 KTSTMIAACHQLFGDMYRE--RILELNASDDRGIQVIRDKVKTFAQ---QTASGFNQDGK 133
KTST++A QLFG +R+ R LELNASDDRGI+V+R+KVK+FAQ +ASG
Sbjct: 63 KTSTIVAVGRQLFGPDFRKNGRFLELNASDDRGIKVVREKVKSFAQGAISSASGL----- 117
Query: 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
PPFKI++LDEADSMT AQ+ALRR ME +K TRFCLICNYVS II+P+ SRC+KFRF
Sbjct: 118 --PPFKIIVLDEADSMTGDAQSALRRMMENYSKVTRFCLICNYVSRIIEPVASRCAKFRF 175
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253
PL + +M +R+++I +E V LE+L+E S GD+R+AI LQS +L G + +
Sbjct: 176 APLEKISMASRVRFIASEERVDVSDSVLESLLECSTGDLRKAINYLQSAKQLCGDDELSQ 235
Query: 254 EDVLEVTGVIPKPWIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASS 310
+DV+ V G+ P +++ + +SF+ ++ IE ++L Y + Q +D V+
Sbjct: 236 DDVIAVAGLAPPELLQQFWVSVTSNSFEKMKTDIESILLAGYPVLTILRQLNDDVLALDK 295
Query: 311 LSDKQKALFKALETLVETSGGDMR 334
L+D QKA + + +G D R
Sbjct: 296 LNDVQKA-----QICLRIAGADKR 314
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 82/137 (59%), Gaps = 3/137 (2%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL---LKVDSF 378
LE+L+E S GD+R+AI LQS +L G + + +DV+ V G+ P +++ + +SF
Sbjct: 203 LESLLECSTGDLRKAINYLQSAKQLCGDDELSQDDVIAVAGLAPPELLQQFWVSVTSNSF 262
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
+ ++ IE ++L Y + Q +D V++ L+D QKA I ++A + RL DGASE+
Sbjct: 263 EKMKTDIESILLAGYPVLTILRQLNDDVLALDKLNDVQKAQICLRIAGADKRLVDGASEH 322
Query: 439 IQILDLGSIVIKANKTA 455
Q+LD+ S ++ T+
Sbjct: 323 FQLLDVASYAMRVYHTS 339
>gi|254585047|ref|XP_002498091.1| ZYRO0G02002p [Zygosaccharomyces rouxii]
gi|238940985|emb|CAR29158.1| ZYRO0G02002p [Zygosaccharomyces rouxii]
Length = 352
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 148/286 (51%), Positives = 201/286 (70%), Gaps = 10/286 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +DDV Q +SVLKK L+ A+LPH LFYGPPGTGKTST+ A +L+G
Sbjct: 24 PWVEKYRPKKLDDVSAQDHTISVLKKTLTSANLPHMLFYGPPGTGKTSTIFALTRELYGP 83
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG---KPCPPFKIVILDEADSM 149
++ + R+LELNASD+RGI ++R+KVK FA+ T S +++ PCPP+KI+ILDEADSM
Sbjct: 84 ELSKTRVLELNASDERGIAIVREKVKNFARLTVSKPSKEALEKYPCPPYKIIILDEADSM 143
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L E+ + RL+ I
Sbjct: 144 TADAQSALRRTMENHSNVTRFCLICNYVTRIIDPLASRCSKFRFKSLDESNAIGRLKEIS 203
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCA-RLKGGE--GIVNEDVLEVTGVIPKP 266
+ E+V + AL+ ++E S GDMRRAIT LQS A RL GE I +++V E+ G++P
Sbjct: 204 QLENVPHEEGALQRILEISNGDMRRAITLLQSAAKRLGFGELDKITSQEVEELAGLVPTH 263
Query: 267 WIEKLL-KVDSFQVLE--KYIEDLILEAYSATQLFDQFHDIVMLAS 309
++++L KV V E +Y+ + + +SA + +Q HD + ++
Sbjct: 264 ILQEMLNKVSQGNVNEIIEYVNEFVKNGWSAVSVVNQLHDYYITSN 309
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 79/130 (60%), Gaps = 6/130 (4%)
Query: 321 ALETLVETSGGDMRRAITCLQSCA-RLKGGE--GIVNEDVLEVTGVIPNPWIEKLL-KVD 376
AL+ ++E S GDMRRAIT LQS A RL GE I +++V E+ G++P ++++L KV
Sbjct: 214 ALQRILEISNGDMRRAITLLQSAAKRLGFGELDKITSQEVEELAGLVPTHILQEMLNKVS 273
Query: 377 SFQVLE--KYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
V E +Y+ + + +SA + +Q HD ++++ K I L + +A+L +G
Sbjct: 274 QGNVNEIIEYVNEFVKNGWSAVSVVNQLHDYYITSNDYGTDFKNKISLLLFDADAKLANG 333
Query: 435 ASEYIQILDL 444
+E++Q+L+L
Sbjct: 334 TNEHLQLLNL 343
>gi|344299747|gb|EGW30100.1| replication factor C, subunit RFC4 [Spathaspora passalidarum NRRL
Y-27907]
Length = 346
Score = 291 bits (744), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 144/292 (49%), Positives = 200/292 (68%), Gaps = 13/292 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
PWVEKYRPK +DDV Q+ V++LK+ L+ A+LPH LFYGPPGTGKTST++A QLFG
Sbjct: 15 TPWVEKYRPKNLDDVASQEHAVAILKRTLATANLPHMLFYGPPGTGKTSTILALSKQLFG 74
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD---GKPCPPFKIVILDEADS 148
++ + R+LELNASD+RGI ++R K+K FA+ T S + PCPP+KI+ILDEADS
Sbjct: 75 PNLSKSRVLELNASDERGINIVRSKIKNFARLTISNPTPEDLANYPCPPYKIIILDEADS 134
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT+ AQ+ALRRTME + TRFCLICNY++ II PL SRCSKFRFK L + L RL+YI
Sbjct: 135 MTNDAQSALRRTMETYSGMTRFCLICNYITRIIDPLASRCSKFRFKLLNNDDGLNRLKYI 194
Query: 209 CEQESVMCDFK--ALETLVETSGGDMRRAITCLQSCARLKGG----EGIVNEDVLEVTGV 262
EQE + D + L+ +++ SGGD+R+AIT LQS ++L + I + + E GV
Sbjct: 195 AEQEDLTLDQEEPVLQQVLDISGGDLRKAITYLQSASKLSNSYDEHQEISGKLIRETAGV 254
Query: 263 IPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSL 311
+ + I++L+ V + + Y+ ++IL+ +S QL Q HD ++L S+
Sbjct: 255 LYEEIIDELVNVIKGKNHTQISNYVNEIILQGWSIQQLISQLHDKLILDDSI 306
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 73/131 (55%), Gaps = 7/131 (5%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGG----EGIVNEDVLEVTGVIPNPWIEKLLKV-- 375
L+ +++ SGGD+R+AIT LQS ++L + I + + E GV+ I++L+ V
Sbjct: 209 LQQVLDISGGDLRKAITYLQSASKLSNSYDEHQEISGKLIRETAGVLYEEIIDELVNVIK 268
Query: 376 -DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
+ + Y+ ++IL+ +S QL Q HD ++ S+ K I L E + RL +G
Sbjct: 269 GKNHTQISNYVNEIILQGWSIQQLISQLHDKLILDDSIDSLTKNQIAINLFETDKRLNNG 328
Query: 435 ASEYIQILDLG 445
+ E+IQ+L+L
Sbjct: 329 SDEHIQLLNLS 339
>gi|400601260|gb|EJP68903.1| replication factor C [Beauveria bassiana ARSEF 2860]
Length = 382
Score = 291 bits (744), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 150/312 (48%), Positives = 204/312 (65%), Gaps = 30/312 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK++DDV Q+ V+VL++ L A+LPH LFYGPPGTGKTST++A QL+G
Sbjct: 34 PWVEKYRPKSLDDVAAQEHTVTVLQRTLQAANLPHMLFYGPPGTGKTSTILALAKQLYGP 93
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ----QTASGFNQDGKPCPPFKIVILDEADS 148
+M + R+LELNASD+RGI ++R+KVK FA+ +G+ + PCPPFKI+ILDEADS
Sbjct: 94 EMMKSRVLELNASDERGISIVREKVKNFARMQLTNPPAGYREK-YPCPPFKIIILDEADS 152
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK L + + + RL+ I
Sbjct: 153 MTQDAQSALRRTMEIYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGSAMKRLEEI 212
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG-------GEGIVNEDV----- 256
ESV A++ LV S GD+R+A+T LQS ARL G G+G + DV
Sbjct: 213 AAAESVPLGDGAIDALVRCSEGDLRKAVTFLQSAARLIGAGAQVKDGDGDEDMDVDKKAV 272
Query: 257 -----LEVTGVIPKPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDI 304
++ GVIP I++L+ S+ + K +ED++ + +SA Q+ Q + +
Sbjct: 273 TVKIIEDIAGVIPGATIDELVAALRPRGSNGSYSSVSKVVEDMVADGWSAGQIVSQLYQV 332
Query: 305 VMLASSLSDKQK 316
+ ++ D QK
Sbjct: 333 ITFDETIPDVQK 344
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 79/148 (53%), Gaps = 24/148 (16%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKG-------GEGIVNEDV----------LEVTGV 363
A++ LV S GD+R+A+T LQS ARL G G+G + DV ++ GV
Sbjct: 224 AIDALVRCSEGDLRKAVTFLQSAARLIGAGAQVKDGDGDEDMDVDKKAVTVKIIEDIAGV 283
Query: 364 IPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQ 416
IP I++L+ S+ + K +ED++ + +SA Q+ Q + ++ ++ D Q
Sbjct: 284 IPGATIDELVAALRPRGSNGSYSSVSKVVEDMVADGWSAGQIVSQLYQVITFDETIPDVQ 343
Query: 417 KALILEKLAECNARLQDGASEYIQILDL 444
K I+ +E + RL DGA E++ ILDL
Sbjct: 344 KNKIVMVFSEVDKRLLDGADEHLSILDL 371
>gi|340501071|gb|EGR27891.1| replication factor C, activator 1, putative [Ichthyophthirius
multifiliis]
Length = 357
Score = 290 bits (743), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 149/335 (44%), Positives = 216/335 (64%), Gaps = 24/335 (7%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+N +PWVEKYRP ID+V Q+EVV L+ L +LPH +F+GPPGTGKTS+++A
Sbjct: 6 TQNNRMPWVEKYRPNKIDEVSYQEEVVKSLEGVLQTGNLPHIIFHGPPGTGKTSSILAFA 65
Query: 88 HQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG-------FNQDGKP----- 134
QL+G + YR+RILELNASDDRGIQV+R+K+K FAQQ F Q+ K
Sbjct: 66 KQLYGPNFYRDRILELNASDDRGIQVVREKIKKFAQQVVVKNPDKQFFFYQNQKSYQLFQ 125
Query: 135 -----CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189
CP +KI+ILDEADSMT AQ+ALRR +E + +TRFC+ICNY++ II+PL SRC
Sbjct: 126 IRNYKCPNYKIIILDEADSMTTEAQSALRRIIEDNSSTTRFCIICNYITKIIEPLASRCV 185
Query: 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249
KFRFKP+ E L +L+ IC++E + + +ALE L+ S GD+R+++ +QS + L +
Sbjct: 186 KFRFKPIVEEAQLCKLKEICDKEYIQYEDQALEKLIHISNGDLRKSVNLIQSASTL-FNK 244
Query: 250 GIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
I + VLE++G IP + L +V + L K ++ I + +SA QL +QF DI++
Sbjct: 245 SINLQTVLEISGSIPDEHVINLYEVLLQKNLNELRKSVQQFIYQGFSADQLINQFSDIIL 304
Query: 307 LASSLSDKQKALFKALETLVETSGGDMRRAITCLQ 341
++ +++ +KA + E + + G RA + LQ
Sbjct: 305 YSNDINEIKKA--RIFEKIAQADQGLNERADSELQ 337
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 81/133 (60%), Gaps = 4/133 (3%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+ALE L+ S GD+R+++ +QS + L + I + VLE++G IP+ + L +V
Sbjct: 215 QALEKLIHISNGDLRKSVNLIQSASTL-FNKSINLQTVLEISGSIPDEHVINLYEVLLQK 273
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+ L K ++ I + +SA QL +QF DI++ ++ +++ +KA I EK+A+ + L + A
Sbjct: 274 NLNELRKSVQQFIYQGFSADQLINQFSDIILYSNDINEIKKARIFEKIAQADQGLNERAD 333
Query: 437 EYIQILDLGSIVI 449
+QIL++ S ++
Sbjct: 334 SELQILNMFSCIL 346
>gi|331215451|ref|XP_003320406.1| replication factor C subunit 2/4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309299396|gb|EFP75987.1| replication factor C subunit 2/4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 382
Score = 290 bits (743), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 149/348 (42%), Positives = 216/348 (62%), Gaps = 38/348 (10%)
Query: 4 FLRTGKLGK-DAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLS 62
F+R G K +AP++ +S +PW+EKYRPK+I+ V Q+ +L K L+
Sbjct: 6 FMRAGAAAKKNAPTADSSSSQPPAA-----LPWIEKYRPKSIESVQGQEGTTKILSKALN 60
Query: 63 GADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFA 121
ADLPH LFYGPPGTGKTST++A LFG ++ + R+LELNASD+RGI V+R+K+K FA
Sbjct: 61 RADLPHMLFYGPPGTGKTSTILALARDLFGPELMKSRVLELNASDERGISVVREKIKNFA 120
Query: 122 QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCII 181
+ + S G PCP +KI+ILDEADSMT AQ+ALRR ME +K TRFCLICNYV+ II
Sbjct: 121 KVSISPATS-GYPCPAYKIIILDEADSMTQDAQSALRRIMENYSKITRFCLICNYVTRII 179
Query: 182 QPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
+P+ SRCSKFRFKPL+ + ++L I ES+ L++L+ S GD+RR+IT LQS
Sbjct: 180 EPIVSRCSKFRFKPLSVSGTRSKLTEISTLESIKISDNVLDSLISISAGDLRRSITFLQS 239
Query: 242 CARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK----------------------VDS--- 276
++L + I+ +D+ E+ G++P+ + +LL+ VD
Sbjct: 240 ASKLATSDEILAQDIEEIGGIVPQKLMGRLLEAVGIEVRGQVGAGGDEDVEMSDVDQKKG 299
Query: 277 -----FQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALF 319
F+ ++ + ++ E YSA Q+ +Q HD+++L + + K KAL
Sbjct: 300 RQKTPFEKIQDVVTSVLREGYSAVQIINQLHDLILLDTLIPSKPKALI 347
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 30/151 (19%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK------- 374
L++L+ S GD+RR+IT LQS ++L + I+ +D+ E+ G++P + +LL+
Sbjct: 219 LDSLISISAGDLRRSITFLQSASKLATSDEILAQDIEEIGGIVPQKLMGRLLEAVGIEVR 278
Query: 375 ---------------VDS--------FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASS 411
VD F+ ++ + ++ E YSA Q+ +Q HD+++ +
Sbjct: 279 GQVGAGGDEDVEMSDVDQKKGRQKTPFEKIQDVVTSVLREGYSAVQIINQLHDLILLDTL 338
Query: 412 LSDKQKALILEKLAECNARLQDGASEYIQIL 442
+ K KALI L E + L DGA E +QIL
Sbjct: 339 IPSKPKALISVALGEADKYLNDGADEGLQIL 369
>gi|328870657|gb|EGG19030.1| replication factor C subunit [Dictyostelium fasciculatum]
Length = 358
Score = 290 bits (743), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 145/304 (47%), Positives = 200/304 (65%), Gaps = 7/304 (2%)
Query: 11 GKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFL 70
GK+ S+S S+ SG + P PWV KYRP+T+DDV Q EVV LKK L G LPH L
Sbjct: 8 GKNT-SNSAPSIG-SGGIQKAPEPWVSKYRPRTVDDVAHQDEVVRALKKSLDGGALPHLL 65
Query: 71 FYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN 129
FYGPPGTGKTST++A L+G D+ ++R+LELNASD+RGI+++R K+K FA T +
Sbjct: 66 FYGPPGTGKTSTILAIAMDLYGPDLIKDRVLELNASDERGIEIVRTKIKNFASFTVNNTT 125
Query: 130 QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189
GK P FK++ILDEADSMT AQAALRRT+E +K+TRFCL+CNY++ II+PL+SRC+
Sbjct: 126 VAGKQVPSFKLIILDEADSMTQDAQAALRRTIENTSKTTRFCLLCNYITRIIEPLSSRCA 185
Query: 190 KFRFKPLAENTMLTRLQYICEQESV-MCDFKALETLVETSGGDMRRAITCLQSCARLKGG 248
KFRFKPL M RL+YI +QE V + + L+ + S GDMR+AIT +QS R
Sbjct: 186 KFRFKPLKSEAMGERLKYIADQEGVNLANESTLDAIHTVSQGDMRKAITFMQSAHRFYAS 245
Query: 249 EGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305
+ I + ++ +++G + +E + K F + +E ++ Y A+Q+ Q DIV
Sbjct: 246 KSITDANIYDISGSVEPKTLELFINSCKSGDFYKVRHLVERVMALGYPASQIISQLFDIV 305
Query: 306 MLAS 309
+ S
Sbjct: 306 VQPS 309
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 72/133 (54%), Gaps = 4/133 (3%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSF 378
L+ + S GDMR+AIT +QS R + I + ++ +++G + +E + K F
Sbjct: 218 LDAIHTVSQGDMRKAITFMQSAHRFYASKSITDANIYDISGSVEPKTLELFINSCKSGDF 277
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNARLQDGASE 437
+ +E ++ Y A+Q+ Q DIV+ S ++ Q+ I K+ + + L DG+ E
Sbjct: 278 YKVRHLVERVMALGYPASQIISQLFDIVVQPSIHFNNIQRTKIAIKIGQIDRNLVDGSDE 337
Query: 438 YIQILDLGSIVIK 450
++Q+ DLG+ ++K
Sbjct: 338 FLQLFDLGAYMMK 350
>gi|308807567|ref|XP_003081094.1| replication factor C 37 kDa subunit (ISS) [Ostreococcus tauri]
gi|116059556|emb|CAL55263.1| replication factor C 37 kDa subunit (ISS) [Ostreococcus tauri]
Length = 342
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 147/279 (52%), Positives = 193/279 (69%), Gaps = 6/279 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+ DV Q++VV VL++ L ++PH LFYGPPGTGKT+ +A QL+G
Sbjct: 17 PWVEKYRPKTVRDVASQEQVVRVLEQALETGNMPHCLFYGPPGTGKTTCALAIAKQLYGP 76
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++Y++R+ ELNASD+RGI V+RDKVKTFA A G G P PP+KI+ILDEAD+MT
Sbjct: 77 ELYKQRVKELNASDERGISVVRDKVKTFAS-LAVGAPAPGYPSPPYKILILDEADAMTTD 135
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+A+RR ME +K TRF L+CNYV+ II P+TSRC+KFRF+PLA TM TRL+YI EQE
Sbjct: 136 AQSAMRRMMETYSKVTRFFLLCNYVTKIIDPITSRCAKFRFQPLALETMTTRLKYIAEQE 195
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
S+ + SGGDMR+AIT LQS ARL G+ + ++EV G IP + LL
Sbjct: 196 SLELSDDVFPACSKHSGGDMRKAITLLQSAARLFSGK-VDAAGIVEVAGYIPDVKLTTLL 254
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLA 308
K F + ++ED++ + YS ++ DQ DIV+ A
Sbjct: 255 DLCKSGDFDKAQAHMEDILRDGYSGIKIMDQLSDIVLEA 293
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 72/126 (57%), Gaps = 5/126 (3%)
Query: 329 SGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYI 385
SGGDMR+AIT LQS ARL G+ + ++EV G IP+ + LL K F + ++
Sbjct: 211 SGGDMRKAITLLQSAARLFSGK-VDAAGIVEVAGYIPDVKLTTLLDLCKSGDFDKAQAHM 269
Query: 386 EDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 445
ED++ + YS ++ DQ DIV+ A SD+ K I K+ E + L GA E +Q+ +
Sbjct: 270 EDILRDGYSGIKIMDQLSDIVLEADC-SDEIKGDIFMKMGEVDRALAQGADEGLQLATVV 328
Query: 446 SIVIKA 451
S IK+
Sbjct: 329 SSAIKS 334
>gi|367007401|ref|XP_003688430.1| hypothetical protein TPHA_0O00240 [Tetrapisispora phaffii CBS 4417]
gi|357526739|emb|CCE65996.1| hypothetical protein TPHA_0O00240 [Tetrapisispora phaffii CBS 4417]
Length = 352
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 144/293 (49%), Positives = 192/293 (65%), Gaps = 10/293 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRP+ +DDV Q V+VLK+ L A+LPH LFYGPPGTGKTST++A +LFG
Sbjct: 25 PWVEKYRPRNLDDVAAQDHAVAVLKRTLGSANLPHMLFYGPPGTGKTSTILALTKELFGP 84
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD---GKPCPPFKIVILDEADSM 149
+ + R+LELNASD+RGI ++R+KVK FA+ T S ++D PCPP+KI+ILDEADSM
Sbjct: 85 QLVKSRVLELNASDERGISIVREKVKNFARLTVSKPSKDDLENYPCPPYKIIILDEADSM 144
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L E L RL+Y+
Sbjct: 145 TADAQSALRRTMETYSTVTRFCLICNYVTRIIDPLASRCSKFRFKALDETNALDRLKYVA 204
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR---LKGGEGIVNEDVLEVTGVIPKP 266
QES + LE +++ S GD+RRAIT LQS ++ + I + V E+ GV+P+
Sbjct: 205 TQESTKYEEGTLEKILQISAGDLRRAITLLQSVSKSSTFNKSDMITIKKVEELAGVVPES 264
Query: 267 WIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
I ++LK+ + + I +S + DQ HD + + + S + K
Sbjct: 265 IINQILKIIESKDVDAITAFTRTFIKNGWSGAAVVDQLHDHYITSDNYSTQFK 317
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 69/129 (53%), Gaps = 6/129 (4%)
Query: 322 LETLVETSGGDMRRAITCLQSCAR---LKGGEGIVNEDVLEVTGVIPNPWIEKLLKV--- 375
LE +++ S GD+RRAIT LQS ++ + I + V E+ GV+P I ++LK+
Sbjct: 216 LEKILQISAGDLRRAITLLQSVSKSSTFNKSDMITIKKVEELAGVVPESIINQILKIIES 275
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
+ + I +S + DQ HD +++ + S + K + L +++L +G
Sbjct: 276 KDVDAITAFTRTFIKNGWSGAAVVDQLHDHYITSDNYSTQFKNSVSWILFNADSKLLNGT 335
Query: 436 SEYIQILDL 444
+E+IQ+L++
Sbjct: 336 NEHIQLLNV 344
>gi|443896109|dbj|GAC73453.1| replication factor C, subunit RFC4 [Pseudozyma antarctica T-34]
Length = 383
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 148/302 (49%), Positives = 195/302 (64%), Gaps = 30/302 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTID+V Q+ V+VLKK L +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 30 PWVEKYRPKTIDEVTAQEHTVAVLKKTLMSNNLPHMLFYGPPGTGKTSTILALARQLFGP 89
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ + R+LELNASD+RGI V+R+K+K FA+ + ++G PCPPFKI+ILDEADSMT
Sbjct: 90 ELMKTRVLELNASDERGITVVREKIKNFAKLAVTN-PKEGFPCPPFKIIILDEADSMTQD 148
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRR ME+ ++ TRFCL+CNYV+ II+PL SRCSKFRF+ L ++ RL+ I E
Sbjct: 149 AQSALRRIMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFRSLDTSSTKARLEMIANTE 208
Query: 213 SVMC-DFKALETLVETSGGDMRRAITCLQSCARLKGGEG-----IVNEDVLEVTGVIPKP 266
+V D + L+TL+ TS GD+RRAIT LQS +RL G + + ++E+ GV+P
Sbjct: 209 AVTFEDGEVLDTLIGTSDGDLRRAITYLQSASRLHSVAGDDKSAVTSASIVEIAGVVPSR 268
Query: 267 WIEKLL----------------------KVDSFQVLEKYIEDLILEAYSATQLFDQFHDI 304
I L K D+F + + + E YS TQL Q HD
Sbjct: 269 VISSLADAVGIEAYAGSDGDVDMDAGAKKRDAFDHIRHEVRVITREGYSITQLLVQLHDY 328
Query: 305 VM 306
V+
Sbjct: 329 VI 330
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 66/143 (46%), Gaps = 27/143 (18%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEG-----IVNEDVLEVTGVIPNPWIEKLL--- 373
L+TL+ TS GD+RRAIT LQS +RL G + + ++E+ GV+P+ I L
Sbjct: 218 LDTLIGTSDGDLRRAITYLQSASRLHSVAGDDKSAVTSASIVEIAGVVPSRVISSLADAV 277
Query: 374 -------------------KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSD 414
K D+F + + + E YS TQL Q HD V+ +L
Sbjct: 278 GIEAYAGSDGDVDMDAGAKKRDAFDHIRHEVRVITREGYSITQLLVQLHDYVIGHPTLLA 337
Query: 415 KQKALILEKLAECNARLQDGASE 437
KA +AE + L DGA E
Sbjct: 338 MIKAKAALLMAEMDKCLTDGADE 360
>gi|367020560|ref|XP_003659565.1| hypothetical protein MYCTH_2296782 [Myceliophthora thermophila ATCC
42464]
gi|347006832|gb|AEO54320.1| hypothetical protein MYCTH_2296782 [Myceliophthora thermophila ATCC
42464]
Length = 384
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 153/340 (45%), Positives = 213/340 (62%), Gaps = 33/340 (9%)
Query: 9 KLGKDAPSSSKTSVSTSGKTRN--KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADL 66
K K A ++ S ST +T + PWVEKYRPK + DV Q ++VL++ L ++L
Sbjct: 8 KARKAAAANGTASTSTEKQTNENARAQPWVEKYRPKKLSDVTAQDHTITVLERTLQASNL 67
Query: 67 PHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ--- 122
PH LFYGPPGTGKTST++A +L+G ++ + R+LELNASD+RGI ++R+KVK FA+
Sbjct: 68 PHMLFYGPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVREKVKDFARTQL 127
Query: 123 -QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCII 181
G+ + PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II
Sbjct: 128 TNPPPGY-KSRYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRII 186
Query: 182 QPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
PL SRCSKFRFK L + RL+ I + E V D A++ L++ S GD+R+AIT LQS
Sbjct: 187 DPLASRCSKFRFKSLDQGNARRRLEDIAKLEGVPIDDGAVDALIKCSDGDLRKAITFLQS 246
Query: 242 CARLKGG---------EG---------IVNEDVLEVTGVIPKPWIEKLLKV-------DS 276
ARL G EG + + V ++ GVIP I+KL++ ++
Sbjct: 247 AARLVGASAATAGGRDEGDKMDVDKKTVTAKVVEDIAGVIPDDTIQKLVQAMRPRTAGET 306
Query: 277 FQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+Q + K +ED++ + +SA Q Q H ++ +++D QK
Sbjct: 307 YQAIAKVVEDMVADGWSAGQTLSQLHQAIVYDETITDAQK 346
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 83/150 (55%), Gaps = 25/150 (16%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGG---------EG---------IVNEDVLEVTG 362
A++ L++ S GD+R+AIT LQS ARL G EG + + V ++ G
Sbjct: 225 AVDALIKCSDGDLRKAITFLQSAARLVGASAATAGGRDEGDKMDVDKKTVTAKVVEDIAG 284
Query: 363 VIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDK 415
VIP+ I+KL++ +++Q + K +ED++ + +SA Q Q H ++ +++D
Sbjct: 285 VIPDDTIQKLVQAMRPRTAGETYQAIAKVVEDMVADGWSAGQTLSQLHQAIVYDETITDA 344
Query: 416 QKALILEKLAECNARLQDGASEYIQILDLG 445
QK I+ +E + RL DGA E++ ILDL
Sbjct: 345 QKNKIVLVFSEIDKRLVDGADEHLSILDLA 374
>gi|239611536|gb|EEQ88523.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
ER-3]
Length = 389
Score = 288 bits (738), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 147/317 (46%), Positives = 203/317 (64%), Gaps = 34/317 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+DDV Q+ V+VL++ L ++LPH LFYGPPGTGKTST++A LFG
Sbjct: 34 PWVEKYRPKTLDDVASQEHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGP 93
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTAS------GFNQDGKPCPPFKIVILDEA 146
+YR RILELNASD+RGI ++R+K+K FA+ S ++ PCPPFKI+ILDEA
Sbjct: 94 QLYRSRILELNASDERGISIVREKIKDFARMQLSHPPASDSAYRETYPCPPFKIIILDEA 153
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
DSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II PL SRCSKFRFK L + +RL+
Sbjct: 154 DSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGSRLE 213
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK-------------------G 247
I E + +ETL+ S GD+RRAIT LQS ARL G
Sbjct: 214 KIARVEKLKLADGCVETLIRCSEGDLRRAITYLQSAARLVGSVGGKDGGGDEEMTDVGAG 273
Query: 248 GEGIVNEDVL-EVTGVIPKPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFD 299
+G++ ++ E+ GV+P I++L+K S++ + + D++ + +SA+Q+
Sbjct: 274 EDGVITARIIEEIAGVVPDDIIDRLIKALQPKKGRSSYEDVANVVTDIVADGWSASQILT 333
Query: 300 QFHDIVMLASSLSDKQK 316
Q + I++ S+ D QK
Sbjct: 334 QLYQIIVFDDSIPDIQK 350
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 82/151 (54%), Gaps = 27/151 (17%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLK-------------------GGEGIVNEDVLE-VT 361
+ETL+ S GD+RRAIT LQS ARL G +G++ ++E +
Sbjct: 228 VETLIRCSEGDLRRAITYLQSAARLVGSVGGKDGGGDEEMTDVGAGEDGVITARIIEEIA 287
Query: 362 GVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSD 414
GV+P+ I++L+K S++ + + D++ + +SA+Q+ Q + I++ S+ D
Sbjct: 288 GVVPDDIIDRLIKALQPKKGRSSYEDVANVVTDIVADGWSASQILTQLYQIIVFDDSIPD 347
Query: 415 KQKALILEKLAECNARLQDGASEYIQILDLG 445
QK ++ +E + RL DGA E++ ILDL
Sbjct: 348 IQKNSLVLVFSEFDKRLIDGADEHLAILDLA 378
>gi|261205028|ref|XP_002627251.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
SLH14081]
gi|239592310|gb|EEQ74891.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
SLH14081]
gi|327348452|gb|EGE77309.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
ATCC 18188]
Length = 389
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 147/317 (46%), Positives = 203/317 (64%), Gaps = 34/317 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+DDV Q+ V+VL++ L ++LPH LFYGPPGTGKTST++A LFG
Sbjct: 34 PWVEKYRPKTLDDVASQEHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGP 93
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTAS------GFNQDGKPCPPFKIVILDEA 146
+YR RILELNASD+RGI ++R+K+K FA+ S ++ PCPPFKI+ILDEA
Sbjct: 94 QLYRSRILELNASDERGISIVREKIKDFARMQLSHPPASDSAYRETYPCPPFKIIILDEA 153
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
DSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II PL SRCSKFRFK L + +RL+
Sbjct: 154 DSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGSRLE 213
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK-------------------G 247
I E + +ETL+ S GD+RRAIT LQS ARL G
Sbjct: 214 KIARVEKLKLADGCVETLIRCSEGDLRRAITYLQSAARLVGSVGGKDGGGDEEMTDVGAG 273
Query: 248 GEGIVNEDVL-EVTGVIPKPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFD 299
+G++ ++ E+ GV+P I++L+K S++ + + D++ + +SA+Q+
Sbjct: 274 EDGVITARIIEEIAGVVPDDIIDRLIKALQPKKGRSSYEDVASVVTDIVADGWSASQILT 333
Query: 300 QFHDIVMLASSLSDKQK 316
Q + I++ S+ D QK
Sbjct: 334 QLYQIIVFDDSIPDIQK 350
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 82/151 (54%), Gaps = 27/151 (17%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLK-------------------GGEGIVNEDVLE-VT 361
+ETL+ S GD+RRAIT LQS ARL G +G++ ++E +
Sbjct: 228 VETLIRCSEGDLRRAITYLQSAARLVGSVGGKDGGGDEEMTDVGAGEDGVITARIIEEIA 287
Query: 362 GVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSD 414
GV+P+ I++L+K S++ + + D++ + +SA+Q+ Q + I++ S+ D
Sbjct: 288 GVVPDDIIDRLIKALQPKKGRSSYEDVASVVTDIVADGWSASQILTQLYQIIVFDDSIPD 347
Query: 415 KQKALILEKLAECNARLQDGASEYIQILDLG 445
QK ++ +E + RL DGA E++ ILDL
Sbjct: 348 IQKNSLVLVFSEFDKRLIDGADEHLAILDLA 378
>gi|256053212|ref|XP_002570095.1| replication factor C / DNA polymerase III gamma-tau subunit
[Schistosoma mansoni]
gi|350645477|emb|CCD59829.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Schistosoma mansoni]
Length = 362
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 157/333 (47%), Positives = 211/333 (63%), Gaps = 24/333 (7%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
MEAFL TG K P SK + + K +PWVEKYRPKT+ +V Q EVVSVL++C
Sbjct: 1 MEAFL-TG--FKQKPQDSKRRIKS-----QKHIPWVEKYRPKTVGEVAYQTEVVSVLQRC 52
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ G+DLP+ LFYGPPGTGKTS ++A QLFG +Y ER+LELNASD+RGI VIR+KVK F
Sbjct: 53 IEGSDLPNLLFYGPPGTGKTSLILALARQLFGPLYSERVLELNASDERGISVIREKVKAF 112
Query: 121 AQ----QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
A + + PP+K++ILDEADSMT AQAALRRTME E ++TRFCL CNY
Sbjct: 113 AHIAVSSSTNSSGSSSTNIPPYKLIILDEADSMTAPAQAALRRTMETEMRTTRFCLTCNY 172
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
V+ II+P+TSRC+KFRF+PL +RL++I + E++ + L+ L+ GD+R+ I
Sbjct: 173 VTRIIEPITSRCAKFRFRPLDNEIARSRLRHIADAENLSITNETLDHLLSLCHGDLRQGI 232
Query: 237 TCLQSCARL---------KGGEGIVNEDVLEVTGVIPKPWIEKLLKVD---SFQVLEKYI 284
T LQ +L I ++++ E V+P I+ L+K SF L+ I
Sbjct: 233 TMLQCVHQLILSVDDSDVGCRSSITSKELDEAAAVVPSDLIKSLIKTSENGSFDDLQIII 292
Query: 285 EDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
++L+LE YSA Q Q H+ ++ LS QKA
Sbjct: 293 KNLLLEGYSAHQTTYQLHEYIINDEKLSCSQKA 325
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 12/143 (8%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARL---------KGGEGIVNEDVLEVTGVIPNPWIE 370
+ L+ L+ GD+R+ IT LQ +L I ++++ E V+P+ I+
Sbjct: 215 ETLDHLLSLCHGDLRQGITMLQCVHQLILSVDDSDVGCRSSITSKELDEAAAVVPSDLIK 274
Query: 371 KLLKVD---SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 427
L+K SF L+ I++L+LE YSA Q Q H+ +++ LS QKA ILE +A
Sbjct: 275 SLIKTSENGSFDDLQIIIKNLLLEGYSAHQTTYQLHEYIINDEKLSCSQKASILESIAVA 334
Query: 428 NARLQDGASEYIQILDLGSIVIK 450
++RL DGA EY+Q+L +G ++K
Sbjct: 335 DSRLIDGADEYLQLLAVGGTLLK 357
>gi|212546601|ref|XP_002153454.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
marneffei ATCC 18224]
gi|210064974|gb|EEA19069.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
marneffei ATCC 18224]
Length = 394
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 148/335 (44%), Positives = 209/335 (62%), Gaps = 35/335 (10%)
Query: 17 SSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPG 76
+SK S + + + + PWVEKYRPK++DDV Q +VL++ L ++LPH LFYGPPG
Sbjct: 23 NSKQKTSENAEEKARLQPWVEKYRPKSLDDVAAQDHTTTVLQRTLQASNLPHMLFYGPPG 82
Query: 77 TGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ---QTASGFN--- 129
TGKTST++A LFG +YR RILELNASD+RGI ++R+K+K FA+ SG +
Sbjct: 83 TGKTSTILALAKSLFGPTLYRTRILELNASDERGINIVREKIKDFARTQLSQPSGLDAAY 142
Query: 130 QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189
++ PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II+PL SRCS
Sbjct: 143 REKYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCS 202
Query: 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249
KFRFK L + R+ I E + D +ETL+ S GD+RRAIT LQS ARL G
Sbjct: 203 KFRFKALDGVSAGDRISEIAAAEGLTLDEGVVETLIRCSEGDLRRAITYLQSAARLVGAT 262
Query: 250 GIVNED---------------------VLEVTGVIPKPWIEKLLKV-------DSFQVLE 281
V +D V E+ GV+P+ ++KL++ +++ +
Sbjct: 263 QPVKKDSQDDTEMTDADSAPALITVRTVEEIAGVVPESVLDKLMQAMQPKKMGSAYEAVA 322
Query: 282 KYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ D++ + +SATQ+ Q + ++ ++ D QK
Sbjct: 323 AVVSDIVADGWSATQILTQLYRRIVFNDAIPDIQK 357
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 78/151 (51%), Gaps = 28/151 (18%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNED---------------------VLEV 360
+ETL+ S GD+RRAIT LQS ARL G V +D V E+
Sbjct: 234 VETLIRCSEGDLRRAITYLQSAARLVGATQPVKKDSQDDTEMTDADSAPALITVRTVEEI 293
Query: 361 TGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLS 413
GV+P ++KL++ +++ + + D++ + +SATQ+ Q + ++ ++
Sbjct: 294 AGVVPESVLDKLMQAMQPKKMGSAYEAVAAVVSDIVADGWSATQILTQLYRRIVFNDAIP 353
Query: 414 DKQKALILEKLAECNARLQDGASEYIQILDL 444
D QK I+ +E + RL DG+ E++ ILD+
Sbjct: 354 DIQKNKIVMVFSEMDKRLLDGSDEHLSILDM 384
>gi|363750506|ref|XP_003645470.1| hypothetical protein Ecym_3150 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889104|gb|AET38653.1| Hypothetical protein Ecym_3150 [Eremothecium cymbalariae
DBVPG#7215]
Length = 350
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 146/281 (51%), Positives = 192/281 (68%), Gaps = 12/281 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK ++DV Q V VLKK L A+LPH LFYGPPGTGKTST++A +LFG
Sbjct: 24 PWVEKYRPKKLEDVTAQSHTVKVLKKTLESANLPHMLFYGPPGTGKTSTILALTKELFGP 83
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG---KPCPPFKIVILDEADSM 149
++ + R+LELNASD+RGI ++R+KVK FA+ T + +++ PCPP+KI+ILDEADSM
Sbjct: 84 ELMKTRVLELNASDERGISIVREKVKNFARLTVTTPSKEDLERHPCPPYKIIILDEADSM 143
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFKPL + LTRLQYI
Sbjct: 144 TADAQSALRRTMETYSNVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNSNALTRLQYIA 203
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPK 265
+ES+ AL+ +++ S GD+R+ IT LQS A+ L E I V E+ GV+P+
Sbjct: 204 SEESLTLADGALDKILDISEGDLRKGITLLQSVAKAVAYLDNAE-ITTSQVEELAGVVPE 262
Query: 266 PWIEKLL-KVDSFQVLE--KYIEDLILEAYSATQLFDQFHD 303
P + +L+ K++S + E Y+ I + A + Q HD
Sbjct: 263 PVLLELVNKIESKDLKEIINYVNSFIKSGWCAASVISQLHD 303
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 8/132 (6%)
Query: 321 ALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPNPWIEKLL-KV 375
AL+ +++ S GD+R+ IT LQS A+ L E I V E+ GV+P P + +L+ K+
Sbjct: 214 ALDKILDISEGDLRKGITLLQSVAKAVAYLDNAE-ITTSQVEELAGVVPEPVLLELVNKI 272
Query: 376 DSFQVLE--KYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQD 433
+S + E Y+ I + A + Q HD + L + K + L E ++RL +
Sbjct: 273 ESKDLKEIINYVNSFIKSGWCAASVISQLHDYYVKNDELDTEFKNKLFLLLFETDSRLAN 332
Query: 434 GASEYIQILDLG 445
G +E++Q+L+L
Sbjct: 333 GTNEHLQLLNLA 344
>gi|347829788|emb|CCD45485.1| similar to replication factor C subunit [Botryotinia fuckeliana]
Length = 379
Score = 288 bits (737), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 153/348 (43%), Positives = 214/348 (61%), Gaps = 29/348 (8%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M +F +A S+ + K N+ PWVEKYRPK + DV Q ++VL++
Sbjct: 1 MASFFDIKARKAEAASNGTVNAKEEAKKNNRMQPWVEKYRPKGLGDVTAQDHTITVLQRT 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
L ++LPH LFYGPPGTGKTST++A +L+G ++ + R+LELNASD+RGI ++R+KVK
Sbjct: 61 LQSSNLPHMLFYGPPGTGKTSTVLALAKELYGPELMKSRVLELNASDERGISIVREKVKD 120
Query: 120 FAQQTASGFN---QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
FA+ S + + PCPP+KI+ILDEADSMT AQ+ALRRTME ++ TRFCLICNY
Sbjct: 121 FARMQLSNPSPAYRQKYPCPPYKIIILDEADSMTQDAQSALRRTMETYSRITRFCLICNY 180
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
V+ II PL SRCSKFRFK L + + R++ I ++E V + A+E L++ S GD+R+AI
Sbjct: 181 VTRIIDPLASRCSKFRFKSLDKGNAVVRVREIADKEGVRLEEGAVEALIKCSEGDLRKAI 240
Query: 237 TCLQSCARLKG-----GEGIVNEDVLEV-------------TGVIPKPWIEKLLKVDS-- 276
T LQS ARL G GE N D ++V GVIP IEKL+K
Sbjct: 241 TYLQSAARLVGAVSQEGEERDNADKMDVDEKMVTVSSVEDIAGVIPDNTIEKLVKAMQPR 300
Query: 277 -----FQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALF 319
++ + K + D++ + +S TQL+ + ++A S +K ALF
Sbjct: 301 SRGVVYEAVSKVVVDMVADGWSGTQLYQTIINSELIADSHKNKIVALF 348
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 89/169 (52%), Gaps = 31/169 (18%)
Query: 303 DIVMLASSLSDKQKALFK--ALETLVETSGGDMRRAITCLQSCARLKG-----GEGIVNE 355
+ V+ ++DK+ + A+E L++ S GD+R+AIT LQS ARL G GE N
Sbjct: 204 NAVVRVREIADKEGVRLEEGAVEALIKCSEGDLRKAITYLQSAARLVGAVSQEGEERDNA 263
Query: 356 DVLEV-------------TGVIPNPWIEKLLKVDS-------FQVLEKYIEDLILEAYSA 395
D ++V GVIP+ IEKL+K ++ + K + D++ + +S
Sbjct: 264 DKMDVDEKMVTVSSVEDIAGVIPDNTIEKLVKAMQPRSRGVVYEAVSKVVVDMVADGWSG 323
Query: 396 TQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 444
TQL+ ++++ ++D K I+ +E + RL DGA E++ ILDL
Sbjct: 324 TQLY----QTIINSELIADSHKNKIVALFSEADKRLVDGADEHLTILDL 368
>gi|358395863|gb|EHK45250.1| hypothetical protein TRIATDRAFT_151487 [Trichoderma atroviride IMI
206040]
Length = 381
Score = 288 bits (736), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 152/325 (46%), Positives = 207/325 (63%), Gaps = 33/325 (10%)
Query: 25 SGKTRNKPV-----PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGK 79
S + +KP PWVEKYRPK++DDV Q V+VL++ L ++LPH LFYGPPGTGK
Sbjct: 19 SSQKHDKPADVRAQPWVEKYRPKSLDDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGK 78
Query: 80 TSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPC 135
TST++A +L+G +M + R+LELNASD+RGI ++R KVK FA+ + +D PC
Sbjct: 79 TSTILALAKELYGPEMIKSRVLELNASDERGISIVRQKVKDFARMQLTNPPPSYKDKYPC 138
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
PPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK
Sbjct: 139 PPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKS 198
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG-------G 248
L + RL+ I E E V + A++ L++ S GD+R+AIT LQS ARL G G
Sbjct: 199 LDQGNAKRRLESIAEAEGVTLEDGAIDALIKCSEGDLRKAITFLQSAARLVGAKPLEKDG 258
Query: 249 EG----------IVNEDVLEVTGVIPKPWIEKLLK-------VDSFQVLEKYIEDLILEA 291
EG + + V ++ GVIP I L+K ++++ + K +EDL+ +
Sbjct: 259 EGDEAMDVDKRPVTVKIVEDIAGVIPGSTINDLVKAMRPSTSAEAYRSISKVVEDLVADG 318
Query: 292 YSATQLFDQFHDIVMLASSLSDKQK 316
+SA Q+ +Q + ++ + D QK
Sbjct: 319 WSAGQVVNQLYQEIVFDEIVPDVQK 343
Score = 78.2 bits (191), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 81/149 (54%), Gaps = 24/149 (16%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKG-------GEG----------IVNEDVLEVTGV 363
A++ L++ S GD+R+AIT LQS ARL G GEG + + V ++ GV
Sbjct: 223 AIDALIKCSEGDLRKAITFLQSAARLVGAKPLEKDGEGDEAMDVDKRPVTVKIVEDIAGV 282
Query: 364 IPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQ 416
IP I L+K ++++ + K +EDL+ + +SA Q+ +Q + ++ + D Q
Sbjct: 283 IPGSTINDLVKAMRPSTSAEAYRSISKVVEDLVADGWSAGQVVNQLYQEIVFDEIVPDVQ 342
Query: 417 KALILEKLAECNARLQDGASEYIQILDLG 445
K I+ +E + RL DGA E++ ILDL
Sbjct: 343 KNKIVLVFSEVDKRLVDGADEHLSILDLA 371
>gi|340517381|gb|EGR47625.1| predicted protein [Trichoderma reesei QM6a]
Length = 351
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 149/291 (51%), Positives = 195/291 (67%), Gaps = 25/291 (8%)
Query: 24 TSGKTRNKPV-----PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTG 78
TS + +KP PWVEKYRPK++DDV Q V+VL++ L ++LPH LFYGPPGTG
Sbjct: 18 TSSQKHDKPADVRVQPWVEKYRPKSLDDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTG 77
Query: 79 KTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKP 134
KTST++A +L+G +M + R+LELNASD+RGI ++R KVK FA+ + +D P
Sbjct: 78 KTSTILALAKELYGPEMIKSRVLELNASDERGISIVRQKVKDFARMQLTNPPPHYKDKYP 137
Query: 135 CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
CPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK
Sbjct: 138 CPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFK 197
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 254
L + RL+ I E E V + A++TL++ S GD+R+AIT LQS ARL + E
Sbjct: 198 SLDQGNAKKRLESIAEAEGVALEDGAVDTLIKCSEGDLRKAITYLQSAARL------IVE 251
Query: 255 DVLEVTGVIPKPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLF 298
D + GVIP I L+K ++Q + K +EDL+ + +SA QL+
Sbjct: 252 D---IAGVIPDATIGDLVKAMRPRTSGQTYQSISKVVEDLVADGWSAGQLY 299
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 77/132 (58%), Gaps = 20/132 (15%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV----- 375
A++TL++ S GD+R+AIT LQS ARL + ED + GVIP+ I L+K
Sbjct: 223 AVDTLIKCSEGDLRKAITYLQSAARL------IVED---IAGVIPDATIGDLVKAMRPRT 273
Query: 376 --DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQD 433
++Q + K +EDL+ + +SA QL + D+V ++ D QK I+ +E + RL D
Sbjct: 274 SGQTYQSISKVVEDLVADGWSAGQL---YQDLVFD-ETIPDIQKNKIVLVFSEIDKRLVD 329
Query: 434 GASEYIQILDLG 445
GA E++ ILDL
Sbjct: 330 GADEHLSILDLA 341
>gi|50552766|ref|XP_503793.1| YALI0E10747p [Yarrowia lipolytica]
gi|49649662|emb|CAG79384.1| YALI0E10747p [Yarrowia lipolytica CLIB122]
Length = 378
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 147/321 (45%), Positives = 204/321 (63%), Gaps = 31/321 (9%)
Query: 28 TRNK-PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
++NK P PWVEKYRPK++DDV Q V+VLK+ L A+LPH LFYGPPGTGKTST++A
Sbjct: 20 SKNKAPPPWVEKYRPKSLDDVSSQDHAVTVLKRTLGSANLPHMLFYGPPGTGKTSTVLAL 79
Query: 87 CHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ---DGKPCPPFKIVI 142
+L+G ++ ++R+LELNASD+RGI ++RD +K FA Q + PCPPFKI+I
Sbjct: 80 AKELYGPELMKDRVLELNASDERGIAIVRDSIKNFAAQKVVAPKDHIAEKYPCPPFKIII 139
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEADSMT AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRF+ L N L
Sbjct: 140 LDEADSMTTDAQSALRRTMETYSAQTRFCLICNYVTRIIDPLASRCSKFRFRLLDGNDAL 199
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG----------GEGIV 252
RL+++ + E + + LE ++E + GD+RRAIT LQSC+RL G G+ +
Sbjct: 200 ARLRHVSDAEQLSVEDGVLEKILEVANGDLRRAITILQSCSRLSGESSAAQNDEDGDATM 259
Query: 253 NE-------DVLEVTGVIPKPWIEKLLKV---------DSFQVLEKYIEDLILEAYSATQ 296
E DV E GVIP ++ ++K D+ + +++L +S+ Q
Sbjct: 260 AETRPITIADVNETAGVIPTETLKAIIKACKDSKGPIGDTVPDILVAVKELTYSGWSSAQ 319
Query: 297 LFDQFHDIVMLASSLSDKQKA 317
+ Q HD+++ + K+K+
Sbjct: 320 ITSQMHDLIITDVLIEGKEKS 340
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 26/149 (17%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKG----------GEGIVNE-------DVLEVTGVI 364
LE ++E + GD+RRAIT LQSC+RL G G+ + E DV E GVI
Sbjct: 218 LEKILEVANGDLRRAITILQSCSRLSGESSAAQNDEDGDATMAETRPITIADVNETAGVI 277
Query: 365 PNPWIEKLLKV---------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDK 415
P ++ ++K D+ + +++L +S+ Q+ Q HD++++ + K
Sbjct: 278 PTETLKAIIKACKDSKGPIGDTVPDILVAVKELTYSGWSSAQITSQMHDLIITDVLIEGK 337
Query: 416 QKALILEKLAECNARLQDGASEYIQILDL 444
+K+ I E L+ + RL DGA E + +L+L
Sbjct: 338 EKSKIAELLSVTDKRLADGADESLAMLNL 366
>gi|358367795|dbj|GAA84413.1| DNA replication factor C subunit Rfc2 [Aspergillus kawachii IFO
4308]
Length = 389
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 150/334 (44%), Positives = 211/334 (63%), Gaps = 33/334 (9%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
+ SK + S + + K PWVEKYRPKT+DDV Q VL++ L ++LPH LFYGPP
Sbjct: 18 NPSKPKPTDSKEEQAKQQPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPP 77
Query: 76 GTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQT---ASGFNQD 131
GTGKTST++A LFG +YR RILELNASD+RGI ++RDK+K FA+ ++G +++
Sbjct: 78 GTGKTSTILALAKSLFGPSLYRSRILELNASDERGIGIVRDKIKNFARAQLTHSTGLSEE 137
Query: 132 ---GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRC 188
PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II+PL SRC
Sbjct: 138 YLAQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRC 197
Query: 189 SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG 248
SKFRFK L + RL++I + E++ + ++ L+ S GDMRRAIT +QS A+L G
Sbjct: 198 SKFRFKALDNSAAGERLEHIAKVENLRLEDGVVDKLIACSEGDMRRAITYMQSAAKLVGA 257
Query: 249 -------------------EGIVNEDVLEVTGVIPKPWIEKLLKV-------DSFQVLEK 282
E I + E+ GV+P+ ++ L++ S++ + K
Sbjct: 258 GRAGKKDEDEDEEMTDQESEVITIRTIEEIAGVVPEGVLDALVQAMQPKKIGSSYEAVAK 317
Query: 283 YIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ D+I + +SATQL Q + V+ ++ D QK
Sbjct: 318 VVTDIIADGWSATQLLLQLYRRVVFNDAIPDIQK 351
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 26/150 (17%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGG-------------------EGIVNEDVLEVTG 362
++ L+ S GDMRRAIT +QS A+L G E I + E+ G
Sbjct: 230 VDKLIACSEGDMRRAITYMQSAAKLVGAGRAGKKDEDEDEEMTDQESEVITIRTIEEIAG 289
Query: 363 VIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDK 415
V+P ++ L++ S++ + K + D+I + +SATQL Q + V+ ++ D
Sbjct: 290 VVPEGVLDALVQAMQPKKIGSSYEAVAKVVTDIIADGWSATQLLLQLYRRVVFNDAIPDI 349
Query: 416 QKALILEKLAECNARLQDGASEYIQILDLG 445
QK I+ ++ + RL DGA E++ ILD+
Sbjct: 350 QKNKIVMAFSDMDRRLVDGADEHLSILDIA 379
>gi|448102295|ref|XP_004199768.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
gi|359381190|emb|CCE81649.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
Length = 360
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 144/303 (47%), Positives = 199/303 (65%), Gaps = 26/303 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPK +D+V Q+ V +LKK L A+LPH LFYGPPGTGKTST++A QL+G
Sbjct: 19 PWVEKYRPKNLDEVASQEHTVKILKKTLESANLPHMLFYGPPGTGKTSTILALARQLYGP 78
Query: 94 -MYRERILELNASDDRGIQVIRDKVKTFAQ---QTASGFNQDGKPCPPFKIVILDEADSM 149
+++ R+LELNASDDRGI ++R KVK FA+ AS + + PCPP+K++ILDEADSM
Sbjct: 79 RLFKSRVLELNASDDRGISIVRQKVKNFARLAVSNASKEDLENYPCPPYKLIILDEADSM 138
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+ AQ+ALRRT+E + TRFCLICNY++ II PL+SRCSKFRF L + L R++YI
Sbjct: 139 TNDAQSALRRTIENYSGVTRFCLICNYITRIIDPLSSRCSKFRFGLLNNDNALQRIRYIV 198
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARL-----------------KGGEGIV 252
E+E++ D ETL+ S GD+R+AIT LQS +RL +G I
Sbjct: 199 EKENLNVDEDVPETLLSMSNGDLRKAITFLQSASRLSFALANPDDNEDRMHVDEGNGKIT 258
Query: 253 NEDVLEVTGVIPKPWIEKLL----KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLA 308
V E+ G+IP +++L+ K ++ ++ +++ IL +SA Q+ DQ HD ++
Sbjct: 259 KPAVQEIAGIIPDDVLKRLVTTIEKGNTREIFNT-VQEFILGGWSAQQVLDQLHDSYVMN 317
Query: 309 SSL 311
SL
Sbjct: 318 HSL 320
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 22/150 (14%)
Query: 323 ETLVETSGGDMRRAITCLQSCARL-----------------KGGEGIVNEDVLEVTGVIP 365
ETL+ S GD+R+AIT LQS +RL +G I V E+ G+IP
Sbjct: 211 ETLLSMSNGDLRKAITFLQSASRLSFALANPDDNEDRMHVDEGNGKITKPAVQEIAGIIP 270
Query: 366 NPWIEKLL----KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALIL 421
+ +++L+ K ++ ++ +++ IL +SA Q+ DQ HD + SL + K I
Sbjct: 271 DDVLKRLVTTIEKGNTREIFNT-VQEFILGGWSAQQVLDQLHDSYVMNHSLKPELKNKIA 329
Query: 422 EKLAECNARLQDGASEYIQILDLGSIVIKA 451
L + +L G E+IQ+L+ V KA
Sbjct: 330 LILFSSDCKLNSGTDEHIQLLNFCLQVAKA 359
>gi|340992727|gb|EGS23282.1| replication factor C subunit 2-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 384
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 153/339 (45%), Positives = 208/339 (61%), Gaps = 31/339 (9%)
Query: 9 KLGKDAPSSSKTSVSTSGKT--RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADL 66
K + A S+ S ST +T + PWVEKYRPKT++DV Q VSVL++ L ++L
Sbjct: 8 KARRAAQSNGTASTSTEKQTAEHTRAQPWVEKYRPKTLNDVTAQDHTVSVLQRTLQASNL 67
Query: 67 PHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTA 125
PH LFYGPPGTGKTST++A +L+G ++ + R+LELNASD+RGI +IR+KVK FA+
Sbjct: 68 PHMLFYGPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIIREKVKDFARTQL 127
Query: 126 SGFNQDGK---PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQ 182
+ K PCPPFK++ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II
Sbjct: 128 TNPPPGYKTKYPCPPFKLIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIID 187
Query: 183 PLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
PL SRCSKFRFK L + RL+ I + E+V A++ L+ S GD+R+AIT LQS
Sbjct: 188 PLASRCSKFRFKSLDQGNARKRLEEIAQLENVGLADGAVDALIRCSEGDLRKAITFLQSA 247
Query: 243 ARLKGGEGIVNED------------------VLEVTGVIPKPWIEKLLKV-------DSF 277
ARL G D V ++ GVIP I+KL+K +++
Sbjct: 248 ARLVGASQAAQGDSEDGDKMDVDKTLVTAKIVEDIAGVIPDDTIQKLVKAMRPRATGETY 307
Query: 278 QVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ K +E+++ + +SA Q Q H ++ ++ D QK
Sbjct: 308 SAIAKVVEEMVADGWSAGQTLAQLHKAIVYDETIPDTQK 346
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 25/150 (16%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED------------------VLEVTG 362
A++ L+ S GD+R+AIT LQS ARL G D V ++ G
Sbjct: 225 AVDALIRCSEGDLRKAITFLQSAARLVGASQAAQGDSEDGDKMDVDKTLVTAKIVEDIAG 284
Query: 363 VIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDK 415
VIP+ I+KL+K +++ + K +E+++ + +SA Q Q H ++ ++ D
Sbjct: 285 VIPDDTIQKLVKAMRPRATGETYSAIAKVVEEMVADGWSAGQTLAQLHKAIVYDETIPDT 344
Query: 416 QKALILEKLAECNARLQDGASEYIQILDLG 445
QK I+ +E + RL DGA E++ +LDL
Sbjct: 345 QKNKIVMVFSEIDKRLVDGADEHLSMLDLA 374
>gi|367015134|ref|XP_003682066.1| hypothetical protein TDEL_0F00440 [Torulaspora delbrueckii]
gi|359749728|emb|CCE92855.1| hypothetical protein TDEL_0F00440 [Torulaspora delbrueckii]
Length = 354
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 143/303 (47%), Positives = 204/303 (67%), Gaps = 11/303 (3%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
S+ + V+ G++ + PWVEKYRPK +D+V Q V+VLKK L ++LPH LFYGPP
Sbjct: 7 SNKRRKVAPEGESESSK-PWVEKYRPKKLDEVAAQDHAVNVLKKTLGSSNLPHMLFYGPP 65
Query: 76 GTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTAS---GFNQD 131
GTGKTST++A +LFG ++ + R+LELNASD+RGI ++R+KVK FA+ T S +++
Sbjct: 66 GTGKTSTILALTKELFGPELTKTRVLELNASDERGISIVREKVKNFARLTVSKPSAKDRE 125
Query: 132 GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
PCPP+KI+ILDEADSMT AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKF
Sbjct: 126 NHPCPPYKIIILDEADSMTADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKF 185
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG- 250
RFK L L RL+YI ++ESV + L+ +++ S GDMRRAIT LQS + KG EG
Sbjct: 186 RFKSLDAANALDRLKYIAKEESVDYEEGVLDDILKISSGDMRRAITLLQSAHKRKGLEGS 245
Query: 251 --IVNEDVLEVTGVIPKPWIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305
I +++ E++G++P I +L + + + +Y+ + +S + +Q H+
Sbjct: 246 KKITPQEIEEISGLVPNSTIHELAAKIAESNIDEIAEYVNTFMKSGWSVAAVTEQLHNYY 305
Query: 306 MLA 308
+++
Sbjct: 306 LVS 308
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 71/129 (55%), Gaps = 6/129 (4%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEG---IVNEDVLEVTGVIPNPWIEKL---LKV 375
L+ +++ S GDMRRAIT LQS + KG EG I +++ E++G++PN I +L +
Sbjct: 215 LDDILKISSGDMRRAITLLQSAHKRKGLEGSKKITPQEIEEISGLVPNSTIHELAAKIAE 274
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
+ + +Y+ + +S + +Q H+ + + K + L +++L +G
Sbjct: 275 SNIDEIAEYVNTFMKSGWSVAAVTEQLHNYYLVSDDYGTDFKNKVSWILFNTDSKLTNGT 334
Query: 436 SEYIQILDL 444
+E+IQ+L+L
Sbjct: 335 NEHIQLLNL 343
>gi|29841325|gb|AAP06357.1| similar to GenBank Accession Number BC003335 activator 1; 37 kDa
subunit; replication factor C subunit)(RFC37)in Mus
musculus [Schistosoma japonicum]
Length = 364
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 148/305 (48%), Positives = 197/305 (64%), Gaps = 18/305 (5%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K +PWVEKYRPKTID+V Q EVVSVL++C+ G+DLP+ LFYGPPGTGKTS ++A QL
Sbjct: 23 KHIPWVEKYRPKTIDEVAYQTEVVSVLRRCIGGSDLPNLLFYGPPGTGKTSLILALARQL 82
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQ-------QTASGFNQDGKPCPPFKIVIL 143
FG +Y ER+LELNASD+RGI VIR+KVK FA + PP+K++IL
Sbjct: 83 FGPLYSERVLELNASDERGIVVIREKVKAFAHVAVSSSGSNTNSSGSSSTNIPPYKLIIL 142
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEADSMT AQAALRRTME E ++TRFCL CNYV+ II+P+TSRC+KFRF+PL
Sbjct: 143 DEADSMTAPAQAALRRTMETEMRTTRFCLTCNYVTRIIEPITSRCAKFRFRPLDNEIARA 202
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL--------KGGEGIVNED 255
RL+YI + E++ + L+ L+ GD+R+ IT LQ +L I + +
Sbjct: 203 RLRYIADAENLSVTDETLDHLLSLCRGDLRQGITMLQCVHQLIMSVDDSNSNSLSITSSE 262
Query: 256 VLEVTGVIPKPWIEKLLKVD---SFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLS 312
+ E V+P I+ L+K +F L+ I++L+LE YSA Q Q H+ ++ +LS
Sbjct: 263 LDEAAAVVPTDVIKSLVKTSENGNFDDLQVIIKNLLLEGYSAHQTIYQLHEYIINDETLS 322
Query: 313 DKQKA 317
QKA
Sbjct: 323 CIQKA 327
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 79/142 (55%), Gaps = 11/142 (7%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARL--------KGGEGIVNEDVLEVTGVIPNPWIEK 371
+ L+ L+ GD+R+ IT LQ +L I + ++ E V+P I+
Sbjct: 218 ETLDHLLSLCRGDLRQGITMLQCVHQLIMSVDDSNSNSLSITSSELDEAAAVVPTDVIKS 277
Query: 372 LLKVD---SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 428
L+K +F L+ I++L+LE YSA Q Q H+ +++ +LS QKA ILE LA +
Sbjct: 278 LVKTSENGNFDDLQVIIKNLLLEGYSAHQTIYQLHEYIINDETLSCIQKASILESLALAD 337
Query: 429 ARLQDGASEYIQILDLGSIVIK 450
+RL DGA EY+Q+L +G ++K
Sbjct: 338 SRLIDGADEYLQLLAIGGTLLK 359
>gi|330845966|ref|XP_003294831.1| replication factor C subunit [Dictyostelium purpureum]
gi|325074630|gb|EGC28646.1| replication factor C subunit [Dictyostelium purpureum]
Length = 344
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 143/303 (47%), Positives = 198/303 (65%), Gaps = 12/303 (3%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
T+ + + PWV KYRPKT+DDV Q +VVS LKK LS +LPH LFYGPPGTGKTST+
Sbjct: 2 TTASKKERSEPWVSKYRPKTMDDVSYQDDVVSALKKSLSTGNLPHLLFYGPPGTGKTSTI 61
Query: 84 IAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFA----QQTASGFNQDGKPCPPF 138
+A ++G ++ ++R+LELNASD+RGI+++R K+K FA +T S N G F
Sbjct: 62 LAIAMDIYGPELIKQRVLELNASDERGIEIVRTKIKNFAGFTVNKTVSNGNNAG---ATF 118
Query: 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAE 198
K++ILDEADSMT AQAALRRT+E +K+TRFCL+CNY+S II PL SRC+KFRFKPL
Sbjct: 119 KLIILDEADSMTSDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDS 178
Query: 199 NTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE 258
+ RL+YI QE + C + + S GDMR+AIT LQS R G + + + +
Sbjct: 179 EATIERLKYISIQEGIKCTDSVYQAIQTVSDGDMRKAITYLQSAFRFYGNK-LTEDTIYN 237
Query: 259 VTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQ 315
++G + I L+ K +SF+ L+ ++ +I + Y +Q+ Q D V+ S +DKQ
Sbjct: 238 ISGTLSPLIITSLIKSCKSNSFKDLQSTVQSIISQGYPVSQVVSQLFDFVLSDSKFNDKQ 297
Query: 316 KAL 318
K+L
Sbjct: 298 KSL 300
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 83/137 (60%), Gaps = 7/137 (5%)
Query: 317 ALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL--- 373
++++A++T+ S GDMR+AIT LQS R G + + + + ++G + I L+
Sbjct: 199 SVYQAIQTV---SDGDMRKAITYLQSAFRFYGNK-LTEDTIYNISGTLSPLIITSLIKSC 254
Query: 374 KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQD 433
K +SF+ L+ ++ +I + Y +Q+ Q D V+S S +DKQK+LI K+ + L D
Sbjct: 255 KSNSFKDLQSTVQSIISQGYPVSQVVSQLFDFVLSDSKFNDKQKSLISMKIGNVDRNLID 314
Query: 434 GASEYIQILDLGSIVIK 450
G+ E++Q+LDL S ++K
Sbjct: 315 GSEEFLQLLDLSSYIMK 331
>gi|169767788|ref|XP_001818365.1| replication factor C subunit 2 [Aspergillus oryzae RIB40]
gi|83766220|dbj|BAE56363.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391870557|gb|EIT79737.1| replication factor C, subunit RFC4 [Aspergillus oryzae 3.042]
Length = 391
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 154/336 (45%), Positives = 209/336 (62%), Gaps = 35/336 (10%)
Query: 16 SSSKTSVSTSGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGP 74
SS T GK + + PWVEKYRPKT+DDV Q +VL++ L ++LPH LFYGP
Sbjct: 18 SSGSKQKPTDGKEEHAQQQPWVEKYRPKTLDDVAAQDHTTNVLQRTLQASNLPHMLFYGP 77
Query: 75 PGTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQ---QTASGFNQ 130
PGTGKTST++A LFG +YR RILELNASD+RGI ++R+KVK FA+ +G ++
Sbjct: 78 PGTGKTSTILALAKSLFGPALYRSRILELNASDERGIAIVREKVKDFARVQLSHPTGVDK 137
Query: 131 ---DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSR 187
+ PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCL+CNYV+ II+PL SR
Sbjct: 138 SYFEKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIEPLASR 197
Query: 188 CSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG 247
CSKFRFKPL + RL I + E++ + ++ L++ S GD+RRAIT +QS ARL G
Sbjct: 198 CSKFRFKPLDNSAAGDRLAQIAKLENLELEDGVVDKLIQCSDGDLRRAITYMQSGARLVG 257
Query: 248 GEG--------------------IVNEDVLEVTGVIPKPWIEKLLKV-------DSFQVL 280
G I V E+ GVIP+ +++L++ S++ +
Sbjct: 258 ATGNSGRQDGGEDAEMTDASSQVITVRMVEEIAGVIPESVLDQLVQAMQPKKIGSSYEAV 317
Query: 281 EKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
K D++ + +SATQL Q + V+ ++ D QK
Sbjct: 318 SKVTTDIVADGWSATQLLAQLYRRVVYNDAIPDIQK 353
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 77/151 (50%), Gaps = 27/151 (17%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEG--------------------IVNEDVLEVT 361
++ L++ S GD+RRAIT +QS ARL G G I V E+
Sbjct: 231 VDKLIQCSDGDLRRAITYMQSGARLVGATGNSGRQDGGEDAEMTDASSQVITVRMVEEIA 290
Query: 362 GVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSD 414
GVIP +++L++ S++ + K D++ + +SATQL Q + V+ ++ D
Sbjct: 291 GVIPESVLDQLVQAMQPKKIGSSYEAVSKVTTDIVADGWSATQLLAQLYRRVVYNDAIPD 350
Query: 415 KQKALILEKLAECNARLQDGASEYIQILDLG 445
QK I+ +E + RL DGA E++ ILD+
Sbjct: 351 IQKNKIVMVFSEMDKRLVDGADEHLSILDVA 381
>gi|350635059|gb|EHA23421.1| hypothetical protein ASPNIDRAFT_47138 [Aspergillus niger ATCC 1015]
Length = 758
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 148/332 (44%), Positives = 208/332 (62%), Gaps = 33/332 (9%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
SK + + + + K PWVEKYRPKT+DDV Q VL++ L ++LPH LFYGPPGT
Sbjct: 389 SKPKPTDNKEEQAKQQPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGT 448
Query: 78 GKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQT---ASGFNQD-- 131
GKTST++A LFG +YR RILELNASD+RGI ++R+K+K FA+ ++G ++
Sbjct: 449 GKTSTILALAKSLFGPSLYRSRILELNASDERGIGIVREKIKNFARAQLTHSTGLGEEYL 508
Query: 132 -GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190
PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II+PL SRCSK
Sbjct: 509 AQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSK 568
Query: 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG-- 248
FRFK L RL++I + E++ + ++ L+ S GDMRRAIT +QS A+L G
Sbjct: 569 FRFKALDNTAAGERLEHIAKVENLRLEDGVVDKLIACSEGDMRRAITYMQSAAKLVGAGR 628
Query: 249 -----------------EGIVNEDVLEVTGVIPKPWIEKLLKV-------DSFQVLEKYI 284
E I + E+ GV+P+ ++ L++ S++ + K +
Sbjct: 629 AGKKDEDEDEEMTDQESEVITVRTIEEIAGVVPESVLDALVQAMQPKKIGSSYEAVAKVV 688
Query: 285 EDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
D+I + +SATQL Q + V+ ++ D QK
Sbjct: 689 TDIIADGWSATQLLLQLYRRVVFNDAIPDIQK 720
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 26/150 (17%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGG-------------------EGIVNEDVLEVTG 362
++ L+ S GDMRRAIT +QS A+L G E I + E+ G
Sbjct: 599 VDKLIACSEGDMRRAITYMQSAAKLVGAGRAGKKDEDEDEEMTDQESEVITVRTIEEIAG 658
Query: 363 VIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDK 415
V+P ++ L++ S++ + K + D+I + +SATQL Q + V+ ++ D
Sbjct: 659 VVPESVLDALVQAMQPKKIGSSYEAVAKVVTDIIADGWSATQLLLQLYRRVVFNDAIPDI 718
Query: 416 QKALILEKLAECNARLQDGASEYIQILDLG 445
QK I+ ++ + RL DGA E++ ILD+
Sbjct: 719 QKNKIVMVFSDMDRRLVDGADEHLSILDVA 748
>gi|406695817|gb|EKC99116.1| DNA replication factor (activator 1 subunit) [Trichosporon asahii
var. asahii CBS 8904]
Length = 389
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 157/369 (42%), Positives = 220/369 (59%), Gaps = 59/369 (15%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTIDDV Q V+VL+K L +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 19 PWVEKYRPKTIDDVSSQDNTVAVLRKALMSTNLPHMLFYGPPGTGKTSTILALARQLFGP 78
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTA---SGFNQDGK--PCPPFKIVILDEAD 147
D+++ R+LELNASD+RGI V+R+K+KTFA++T G DGK PCPP+K++ILDEAD
Sbjct: 79 DLFKSRVLELNASDERGISVVREKIKTFARETPRHNPGVASDGKEYPCPPYKLIILDEAD 138
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
SMT AQ+ALRR ME ++ TRFCL+CNYV+ II+P+ SRCSKFRF+PL +++ R++
Sbjct: 139 SMTQDAQSALRRIMETYSRITRFCLVCNYVTRIIEPVASRCSKFRFRPLEQSSSQARMEM 198
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK-------------GGEGIVNE 254
I E E V D LE +++ +GGD+R+AIT LQ+ RL G E
Sbjct: 199 IAENEGVQADPGVLELILQLAGGDLRKAITYLQTAQRLHQASDPPTPITAMSGKSSSAPE 258
Query: 255 -----------------DVLEVTGVIPKPWIEKLLK--------------VDSFQVLEKY 283
V E++GV+P I+ LL+ + F+ + K
Sbjct: 259 LPTAFFPLSYLKPSELTAVHEISGVVPSSVIDNLLRSMGIEPGSGLNPTLANGFEGVRKA 318
Query: 284 IEDLILEAYSATQLFDQFHDIVMLASSL-----SDKQKALFKALETLVETSGGDMRRAIT 338
+ + E +S Q+ +Q HD ++ +++ S+ A+ + + L E GGD +
Sbjct: 319 VRSVGREGWSTGQVLEQVHDALIPLAAIPTIAKSNAALAIAECDKALCE--GGD--EELQ 374
Query: 339 CLQSCARLK 347
L+ C R+K
Sbjct: 375 LLECCLRIK 383
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 44/166 (26%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLK-------------GGEGIVNE------------- 355
LE +++ +GGD+R+AIT LQ+ RL G E
Sbjct: 212 LELILQLAGGDLRKAITYLQTAQRLHQASDPPTPITAMSGKSSSAPELPTAFFPLSYLKP 271
Query: 356 ----DVLEVTGVIPNPWIEKLLK--------------VDSFQVLEKYIEDLILEAYSATQ 397
V E++GV+P+ I+ LL+ + F+ + K + + E +S Q
Sbjct: 272 SELTAVHEISGVVPSSVIDNLLRSMGIEPGSGLNPTLANGFEGVRKAVRSVGREGWSTGQ 331
Query: 398 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILD 443
+ +Q HD ++ +++ K+ +AEC+ L +G E +Q+L+
Sbjct: 332 VLEQVHDALIPLAAIPTIAKSNAALAIAECDKALCEGGDEELQLLE 377
>gi|145477489|ref|XP_001424767.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391833|emb|CAK57369.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 217/337 (64%), Gaps = 20/337 (5%)
Query: 31 KP-VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
KP +PWVEKYRP I+D+ Q+EVV L+ L +LPH L +GPPGTGKTST+IA Q
Sbjct: 24 KPMLPWVEKYRPNKIEDLAYQEEVVQSLQGVLKTGNLPHLLLHGPPGTGKTSTIIALAKQ 83
Query: 90 LFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADS 148
LFG D +R+R+LELNASDDRGI V+R+KVK FA+Q + G CP +KI+ILDEADS
Sbjct: 84 LFGPDFWRQRVLELNASDDRGINVVRNKVKKFAEQIVAKNPNPGFLCPSYKIIILDEADS 143
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT+ AQ+ALRR +E +TRFC+ICNY++ II+PL SRC K+RFK + EN + RL+++
Sbjct: 144 MTNDAQSALRRIIEDYATTTRFCIICNYITKIIEPLVSRCVKYRFKSIPENEQIERLKFV 203
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL-EVTGVIPKPW 267
+ ESV + AL+ LV SGGD+R+++ LQS + L E +N+ + E++G IP
Sbjct: 204 ADSESVTYNLDALKQLVVVSGGDLRKSVNMLQSSSTLY--EKSINKKAINEISGFIPDEQ 261
Query: 268 IEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKAL-- 322
IE L+ V S + +++ +I + Y+ QL QF D+V+ ++ +KQKA +
Sbjct: 262 IEDLVSVIQTKSIRSVQEECTRVIQQGYNIEQLILQFLDVVLATDTIKEKQKAKMMEIAA 321
Query: 323 ---ETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 356
+ L+E S D+ + + C R I+NE+
Sbjct: 322 YTEKCLIEGSAEDL-QIFNLMAQCQR------IINEN 351
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 77/128 (60%), Gaps = 6/128 (4%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL-EVTGVIPNPWIEKLLKV---D 376
AL+ LV SGGD+R+++ LQS + L E +N+ + E++G IP+ IE L+ V
Sbjct: 215 ALKQLVVVSGGDLRKSVNMLQSSSTLY--EKSINKKAINEISGFIPDEQIEDLVSVIQTK 272
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
S + +++ +I + Y+ QL QF D+V++ ++ +KQKA ++E A L +G++
Sbjct: 273 SIRSVQEECTRVIQQGYNIEQLILQFLDVVLATDTIKEKQKAKMMEIAAYTEKCLIEGSA 332
Query: 437 EYIQILDL 444
E +QI +L
Sbjct: 333 EDLQIFNL 340
>gi|71000134|ref|XP_754784.1| DNA replication factor C subunit Rfc2 [Aspergillus fumigatus Af293]
gi|66852421|gb|EAL92746.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
fumigatus Af293]
gi|159127792|gb|EDP52907.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
fumigatus A1163]
Length = 394
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 149/337 (44%), Positives = 208/337 (61%), Gaps = 38/337 (11%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
+SSK + + + + PWVEKYRPKT+DDV Q VL++ L ++LPH LFYGPP
Sbjct: 22 TSSKQKPTDGKEEQTRLQPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPP 81
Query: 76 GTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQT--------AS 126
GTGKTST++A LFG +YR RILELNASD+RGI ++R+KVK FA+ +S
Sbjct: 82 GTGKTSTILALAKSLFGPALYRSRILELNASDERGIGIVREKVKGFARTQLSQPTGLDSS 141
Query: 127 GFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186
F Q PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II+PL S
Sbjct: 142 YFEQ--YPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLAS 199
Query: 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246
RCSKFRFKPL + RL +I E++ D ++ L+ S GD+RRAIT +QS ARL
Sbjct: 200 RCSKFRFKPLDNSAAAERLAHIARLENLKLDEGVIDKLISCSEGDLRRAITYMQSAARLV 259
Query: 247 GG--------------------EGIVNEDVLEVTGVIPKPWIEKLLKV-------DSFQV 279
G E + + + E+ GV+P+ I++L++ S++
Sbjct: 260 GAGRPTSQKDGDEDSEMTDASSEPVTMQMIEEIAGVVPESVIDRLIQAMQPKKLGSSYEA 319
Query: 280 LEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ + D++ + +SA QL Q + ++ ++ D QK
Sbjct: 320 ISTVVTDIVADGWSAGQLVLQLYRRIVYNDAIPDIQK 356
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 27/151 (17%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGG--------------------EGIVNEDVLEVT 361
++ L+ S GD+RRAIT +QS ARL G E + + + E+
Sbjct: 234 IDKLISCSEGDLRRAITYMQSAARLVGAGRPTSQKDGDEDSEMTDASSEPVTMQMIEEIA 293
Query: 362 GVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSD 414
GV+P I++L++ S++ + + D++ + +SA QL Q + ++ ++ D
Sbjct: 294 GVVPESVIDRLIQAMQPKKLGSSYEAISTVVTDIVADGWSAGQLVLQLYRRIVYNDAIPD 353
Query: 415 KQKALILEKLAECNARLQDGASEYIQILDLG 445
QK I+ +E + RL DGA E++ ILDL
Sbjct: 354 IQKNKIVTAFSEMDKRLVDGADEHLSILDLA 384
>gi|367042572|ref|XP_003651666.1| hypothetical protein THITE_2112208 [Thielavia terrestris NRRL 8126]
gi|346998928|gb|AEO65330.1| hypothetical protein THITE_2112208 [Thielavia terrestris NRRL 8126]
Length = 383
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 151/311 (48%), Positives = 199/311 (63%), Gaps = 28/311 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+ DV Q VSVL++ L ++LPH LFYGPPGTGKTST++A +L+G
Sbjct: 35 PWVEKYRPKTLSDVTAQDHTVSVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGP 94
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK---PCPPFKIVILDEADSM 149
++ + R+LELNASD+RGI ++R+KVK FA+ + K PCPPFKI+ILDEADSM
Sbjct: 95 ELMKSRVLELNASDERGISIVREKVKDFARTQLTNPPPGYKARYPCPPFKIIILDEADSM 154
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK L + RL+ I
Sbjct: 155 TQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNARRRLEEIA 214
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG----GEGIVNED---------- 255
E V + A++ L++ S GD+R+AIT LQS ARL G G +ED
Sbjct: 215 RLEGVGMEDGAVDALIKCSDGDLRKAITFLQSAARLVGASSAGSDGKDEDRMGVDKKLVT 274
Query: 256 ---VLEVTGVIPKPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305
V ++ GVIP I+KL+ +++Q + K +EDL+ + +SA Q Q H V
Sbjct: 275 AKVVEDIAGVIPDDTIQKLVAAMRPRAAGETYQAIAKVVEDLVADGWSAGQTMAQLHQAV 334
Query: 306 MLASSLSDKQK 316
+ ++ D QK
Sbjct: 335 VYDETIPDIQK 345
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 24/149 (16%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKG----GEGIVNED-------------VLEVTGV 363
A++ L++ S GD+R+AIT LQS ARL G G +ED V ++ GV
Sbjct: 225 AVDALIKCSDGDLRKAITFLQSAARLVGASSAGSDGKDEDRMGVDKKLVTAKVVEDIAGV 284
Query: 364 IPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQ 416
IP+ I+KL+ +++Q + K +EDL+ + +SA Q Q H V+ ++ D Q
Sbjct: 285 IPDDTIQKLVAAMRPRAAGETYQAIAKVVEDLVADGWSAGQTMAQLHQAVVYDETIPDIQ 344
Query: 417 KALILEKLAECNARLQDGASEYIQILDLG 445
K I+ +E + RL DGA E++ ILDL
Sbjct: 345 KNRIVMVFSEIDKRLVDGADEHLSILDLA 373
>gi|226479998|emb|CAX73295.1| hypothetical protein [Schistosoma japonicum]
Length = 364
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 148/305 (48%), Positives = 197/305 (64%), Gaps = 18/305 (5%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K +PWVEKYRPKTID+V Q EVVSVL++C+ G+DLP+ LFYGPPGTGKTS ++A QL
Sbjct: 23 KHIPWVEKYRPKTIDEVAYQTEVVSVLRRCIGGSDLPNLLFYGPPGTGKTSLILALARQL 82
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQ-------QTASGFNQDGKPCPPFKIVIL 143
FG +Y ER+LELNASD+RGI VIR+KVK FA + PP+K++IL
Sbjct: 83 FGPLYSERVLELNASDERGIVVIREKVKAFAHVAVSSSGSNTNSSGSSSTNIPPYKLIIL 142
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEADSMT AQAALRRTME E ++TRFCL CNYV+ II+P+TSRC+KFRF+PL
Sbjct: 143 DEADSMTAPAQAALRRTMETEMRTTRFCLTCNYVTRIIEPITSRCAKFRFRPLDNEIARA 202
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL--------KGGEGIVNED 255
RL+YI + E++ + L+ L+ GD+R+ IT LQ +L I + +
Sbjct: 203 RLRYIADAENLSVTDETLDHLLSLCRGDLRQGITMLQCVHQLIMSVDDSNSNSLSITSSE 262
Query: 256 VLEVTGVIPKPWIEKLLKVD---SFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLS 312
+ E V+P I+ L+K +F L+ I++L+LE YSA Q Q H+ ++ +LS
Sbjct: 263 LDEAAAVVPTDVIKSLVKTSENGNFDDLQVIIKNLLLEGYSAHQTIYQLHECIINDETLS 322
Query: 313 DKQKA 317
QKA
Sbjct: 323 CIQKA 327
Score = 79.3 bits (194), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 79/142 (55%), Gaps = 11/142 (7%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARL--------KGGEGIVNEDVLEVTGVIPNPWIEK 371
+ L+ L+ GD+R+ IT LQ +L I + ++ E V+P I+
Sbjct: 218 ETLDHLLSLCRGDLRQGITMLQCVHQLIMSVDDSNSNSLSITSSELDEAAAVVPTDVIKS 277
Query: 372 LLKVD---SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 428
L+K +F L+ I++L+LE YSA Q Q H+ +++ +LS QKA ILE LA +
Sbjct: 278 LVKTSENGNFDDLQVIIKNLLLEGYSAHQTIYQLHECIINDETLSCIQKASILESLALAD 337
Query: 429 ARLQDGASEYIQILDLGSIVIK 450
+RL DGA EY+Q+L +G ++K
Sbjct: 338 SRLIDGADEYLQLLAIGGTLLK 359
>gi|121705176|ref|XP_001270851.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
clavatus NRRL 1]
gi|119398997|gb|EAW09425.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
clavatus NRRL 1]
Length = 391
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 148/337 (43%), Positives = 208/337 (61%), Gaps = 38/337 (11%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
S SK + + + + + PWVEKYRPKT+DDV Q VL++ L ++LPH LFYGPP
Sbjct: 19 SGSKQKPTDAKEEQTRLQPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPP 78
Query: 76 GTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQT--------AS 126
GTGKTST++A LFG +YR RILELNASD+RGI ++R+K+K FA+ +S
Sbjct: 79 GTGKTSTILALAKSLFGPALYRSRILELNASDERGIGIVREKIKGFARTQLSQPTGLDSS 138
Query: 127 GFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186
F Q PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II+PL S
Sbjct: 139 YFEQ--YPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLAS 196
Query: 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL- 245
RCSKFRFKPL + RL+ I EQE++ + +E L+ GD+RRAIT +QS ARL
Sbjct: 197 RCSKFRFKPLDNSAAGERLKSIAEQENLNLEDGVIEKLISCGEGDLRRAITYMQSAARLV 256
Query: 246 -------------------KGGEGIVNEDVLEVTGVIPKPWIEKLLKV-------DSFQV 279
G + I + E+ GV+P+ +++L++ S++
Sbjct: 257 GVGRAAAPKDGDEDSEMADAGSQAITVRTIEEIAGVVPESVLDRLVQAMQPKKLGSSYEA 316
Query: 280 LEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ + D++ + +SA QL Q + ++ ++ D QK
Sbjct: 317 VSAVVTDIVADGWSAGQLVLQLYRRIVYNDAIPDIQK 353
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 27/151 (17%)
Query: 322 LETLVETSGGDMRRAITCLQSCARL--------------------KGGEGIVNEDVLEVT 361
+E L+ GD+RRAIT +QS ARL G + I + E+
Sbjct: 231 IEKLISCGEGDLRRAITYMQSAARLVGVGRAAAPKDGDEDSEMADAGSQAITVRTIEEIA 290
Query: 362 GVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSD 414
GV+P +++L++ S++ + + D++ + +SA QL Q + ++ ++ D
Sbjct: 291 GVVPESVLDRLVQAMQPKKLGSSYEAVSAVVTDIVADGWSAGQLVLQLYRRIVYNDAIPD 350
Query: 415 KQKALILEKLAECNARLQDGASEYIQILDLG 445
QK I+ +E + RL DGA E++ ILDL
Sbjct: 351 IQKNRIVTAFSEMDKRLVDGADEHLSILDLA 381
>gi|116207062|ref|XP_001229340.1| hypothetical protein CHGG_02824 [Chaetomium globosum CBS 148.51]
gi|88183421|gb|EAQ90889.1| hypothetical protein CHGG_02824 [Chaetomium globosum CBS 148.51]
Length = 382
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 152/329 (46%), Positives = 208/329 (63%), Gaps = 31/329 (9%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
+SS T S TR +P WVEKYRPKT+ DV Q ++VL++ L ++LPH LFYGPP
Sbjct: 19 TSSSTEKQKSETTRVQP--WVEKYRPKTLSDVTAQDHTITVLERTLQASNLPHMLFYGPP 76
Query: 76 GTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ----QTASGFNQ 130
GTGKTST++A +L+G ++ + R+LELNASD+RGI ++R+KVK FA+ +G+ +
Sbjct: 77 GTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVREKVKDFARTQLTNPPAGY-K 135
Query: 131 DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190
PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSK
Sbjct: 136 TRYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSK 195
Query: 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG 250
FRFK L + RL+ I E V + A++ L++ S GD+R+AIT LQS ARL G
Sbjct: 196 FRFKSLDQGNARRRLEEIARLEGVPIEDAAVDALIKCSDGDLRKAITFLQSAARLVGASA 255
Query: 251 IV--NED--------------VLEVTGVIPKPWIEKLLKV-------DSFQVLEKYIEDL 287
V ED V ++ GVIP I+ L++ +++Q + K +E++
Sbjct: 256 SVAGGEDGEAMDVDKMVTAKVVEDIAGVIPDSTIQALVQAMRPRAAGETYQAIAKVVEEM 315
Query: 288 ILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ + +SA Q Q H V+ ++ D QK
Sbjct: 316 VADGWSAGQTMTQLHSAVVYDETIPDIQK 344
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 80/148 (54%), Gaps = 23/148 (15%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIV--NED--------------VLEVTGVI 364
A++ L++ S GD+R+AIT LQS ARL G V ED V ++ GVI
Sbjct: 225 AVDALIKCSDGDLRKAITFLQSAARLVGASASVAGGEDGEAMDVDKMVTAKVVEDIAGVI 284
Query: 365 PNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQK 417
P+ I+ L++ +++Q + K +E+++ + +SA Q Q H V+ ++ D QK
Sbjct: 285 PDSTIQALVQAMRPRAAGETYQAIAKVVEEMVADGWSAGQTMTQLHSAVVYDETIPDIQK 344
Query: 418 ALILEKLAECNARLQDGASEYIQILDLG 445
I+ +E + RL DGA E++ ILDL
Sbjct: 345 NKIVMVFSETDKRLVDGADEHLSILDLA 372
>gi|408398889|gb|EKJ78015.1| hypothetical protein FPSE_01803 [Fusarium pseudograminearum CS3096]
Length = 382
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 153/318 (48%), Positives = 202/318 (63%), Gaps = 32/318 (10%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
TRN+P WVEKYRPKT+ DV Q V VL++ L ++LPH LFYGPPGTGKTST++A
Sbjct: 30 TRNQP--WVEKYRPKTLSDVTAQDHTVDVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALA 87
Query: 88 HQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ----QTASGFNQDGKPCPPFKIVI 142
+L+G DM + R+LELNASD+RGI ++R+KVK FA+ G+ +D PCPPFKI+I
Sbjct: 88 KELYGPDMIKSRVLELNASDERGISIVREKVKNFARMQLTNPPPGY-KDKYPCPPFKIII 146
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK L ++
Sbjct: 147 LDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQSNAK 206
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG-------GEG----- 250
RL+ I E+E V + A++ L++ S GD+R+AIT LQS ARL G GEG
Sbjct: 207 KRLEEIAEKEGVPLEDGAVDALIKCSEGDLRKAITFLQSAARLVGASASDKDGEGDEAMD 266
Query: 251 -----IVNEDVLEVTGVIPKPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLF 298
+ + V ++ GVIP I L+ S+Q + +E L+ + +SA Q+
Sbjct: 267 VDKKAVTVKIVEDIAGVIPDSTIGDLVSAIRPKSSGSSYQAISDVVEKLVADGWSAGQVV 326
Query: 299 DQFHDIVMLASSLSDKQK 316
Q + + + D QK
Sbjct: 327 GQLYQALTYDEIIPDAQK 344
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 25/155 (16%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKG-------GEG----------IVNEDVLEVTGV 363
A++ L++ S GD+R+AIT LQS ARL G GEG + + V ++ GV
Sbjct: 224 AVDALIKCSEGDLRKAITFLQSAARLVGASASDKDGEGDEAMDVDKKAVTVKIVEDIAGV 283
Query: 364 IPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQ 416
IP+ I L+ S+Q + +E L+ + +SA Q+ Q + + + D Q
Sbjct: 284 IPDSTIGDLVSAIRPKSSGSSYQAISDVVEKLVADGWSAGQVVGQLYQALTYDEIIPDAQ 343
Query: 417 KALILEKLAECNARLQDGASEYIQILDLGSIVIKA 451
K I+ +E + RL DGA E++ +LDL S+ I A
Sbjct: 344 KNKIVMVFSEVDKRLVDGADEHLSVLDL-SVRISA 377
>gi|429856209|gb|ELA31133.1| activator 1 41 kda subunit [Colletotrichum gloeosporioides Nara
gc5]
Length = 381
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 145/309 (46%), Positives = 201/309 (65%), Gaps = 26/309 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+ DV Q V+VL++ L ++LPH LFYGPPGTGKTST++A +L+G
Sbjct: 33 PWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTVLALAKELYGP 92
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK---PCPPFKIVILDEADSM 149
+M + R+LELNASD+RGI ++R+KVK FA+ + + K P PPFKI+ILDEADSM
Sbjct: 93 EMMKSRVLELNASDERGISIVREKVKDFARMQLTNPTAEYKKRYPVPPFKIIILDEADSM 152
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK L + RL+ I
Sbjct: 153 TQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKRRLEDIA 212
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG---------------EGIVNE 254
+ E V + A++ L++ S GD+R+AIT LQS ARL G + + +
Sbjct: 213 QNEGVQLEDGAVDALIKCSEGDLRKAITFLQSAARLVGAGNEEKSADDAMDVDKKPVTVK 272
Query: 255 DVLEVTGVIPKPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVML 307
V ++ GVIP+ I+KL+ D++Q + K +ED++ + +SA Q+ Q + ++
Sbjct: 273 TVEDIAGVIPENTIDKLVSAIRPQRAGDTYQNVAKVVEDMVADGWSAGQVVSQLYQAIVF 332
Query: 308 ASSLSDKQK 316
++ D QK
Sbjct: 333 DETIPDVQK 341
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 80/146 (54%), Gaps = 22/146 (15%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGG---------------EGIVNEDVLEVTGVIP 365
A++ L++ S GD+R+AIT LQS ARL G + + + V ++ GVIP
Sbjct: 223 AVDALIKCSEGDLRKAITFLQSAARLVGAGNEEKSADDAMDVDKKPVTVKTVEDIAGVIP 282
Query: 366 NPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKA 418
I+KL+ D++Q + K +ED++ + +SA Q+ Q + ++ ++ D QK
Sbjct: 283 ENTIDKLVSAIRPQRAGDTYQNVAKVVEDMVADGWSAGQVVSQLYQAIVFDETIPDVQKN 342
Query: 419 LILEKLAECNARLQDGASEYIQILDL 444
I+ +E + RL DGA E++ ILDL
Sbjct: 343 KIVLIFSEVDKRLVDGADEHLSILDL 368
>gi|242822833|ref|XP_002487968.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
stipitatus ATCC 10500]
gi|218712889|gb|EED12314.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
stipitatus ATCC 10500]
Length = 393
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 148/334 (44%), Positives = 206/334 (61%), Gaps = 34/334 (10%)
Query: 17 SSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPG 76
SSK S + + + + PWVEKYRPK++DDV Q +VL++ L ++LPH LFYGPPG
Sbjct: 23 SSKQKTSENAEEQARLQPWVEKYRPKSLDDVAAQDHTTAVLQRTLQASNLPHMLFYGPPG 82
Query: 77 TGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQ---QTASGFNQDG 132
TGKTST++A LFG +YR RILELNASD+RGI ++R+K+K FA+ SG +
Sbjct: 83 TGKTSTILALSKSLFGPALYRTRILELNASDERGINIVREKIKDFARTQLSHPSGLDAAY 142
Query: 133 K---PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189
K PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II+PL SRCS
Sbjct: 143 KAKYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCS 202
Query: 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249
KFRFK L + R+ I + E + D ++TL+ S GD+RRAIT LQS ARL G
Sbjct: 203 KFRFKALDGVSAGDRINEIAQAEGLTLDDGVVDTLIRCSEGDLRRAITYLQSAARLVGAT 262
Query: 250 G--------------------IVNEDVLEVTGVIPKPWIEKLLKV-------DSFQVLEK 282
I + V E+ GV+P+ ++KL + +++ +
Sbjct: 263 STQKGKKDQEDTEMTDAGSSLITVQTVEEIAGVVPESVLDKLTQAMQPKKMGSAYEAVAS 322
Query: 283 YIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ D++ + +SATQ+ Q + + ++ D QK
Sbjct: 323 VVSDIVADGWSATQILTQLYRRTVFNDAIPDTQK 356
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 27/150 (18%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEG--------------------IVNEDVLEVT 361
++TL+ S GD+RRAIT LQS ARL G I + V E+
Sbjct: 234 VDTLIRCSEGDLRRAITYLQSAARLVGATSTQKGKKDQEDTEMTDAGSSLITVQTVEEIA 293
Query: 362 GVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSD 414
GV+P ++KL + +++ + + D++ + +SATQ+ Q + + ++ D
Sbjct: 294 GVVPESVLDKLTQAMQPKKMGSAYEAVASVVSDIVADGWSATQILTQLYRRTVFNDAIPD 353
Query: 415 KQKALILEKLAECNARLQDGASEYIQILDL 444
QK I+ +E + RL DG+ E++ ILD+
Sbjct: 354 TQKNKIVMVFSEMDKRLLDGSDEHLSILDM 383
>gi|448537421|ref|XP_003871334.1| Rfc2 heteropentameric replication factor C subunit [Candida
orthopsilosis Co 90-125]
gi|380355691|emb|CCG25209.1| Rfc2 heteropentameric replication factor C subunit [Candida
orthopsilosis]
Length = 355
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 142/302 (47%), Positives = 196/302 (64%), Gaps = 23/302 (7%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK ++D+ Q+ V VL+K +S +LPH LFYGPPGTGKTST++A QL+G
Sbjct: 15 PWVEKYRPKNLNDIASQEHAVKVLEKQVSTGNLPHMLFYGPPGTGKTSTILALAKQLYGP 74
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD---GKPCPPFKIVILDEADSM 149
++Y+ R+LELNASD+RGI ++R K+K FA+ T S + PCPP+KI+ILDEADSM
Sbjct: 75 NLYKSRVLELNASDERGISIVRQKIKNFAKLTVSNPTPEDLKNYPCPPYKIIILDEADSM 134
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+ AQ+ALRRTME TRF L+CNY++ II PL SRCSKFRFK L L RL+YI
Sbjct: 135 TNDAQSALRRTMETYANITRFALVCNYITRIIDPLASRCSKFRFKLLNNENSLNRLKYIA 194
Query: 210 EQESVMCDFK-----ALETLVETSGGDMRRAITCLQSCARLK----------GGEGIVN- 253
+E + D L +++ S GD+R+AIT LQS ++L G G++
Sbjct: 195 NEEQLNLDKSQGEDGVLNEVLKISNGDLRKAITYLQSASKLSTSLQLEDDQDGNAGLITK 254
Query: 254 EDVLEVTGVIPKPWIEKLLKVDSFQVLEKYI---EDLILEAYSATQLFDQFHDIVMLASS 310
+ + E GV+P I+ L+K + EK I D+IL +SA QL DQ H+++++ S
Sbjct: 255 QSIRETAGVLPDELIDSLIKTIRSKNEEKLISLVNDIILSGWSAQQLIDQLHEVLVIDDS 314
Query: 311 LS 312
++
Sbjct: 315 IN 316
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 81/149 (54%), Gaps = 20/149 (13%)
Query: 313 DKQKALFKALETLVETSGGDMRRAITCLQSCARLK----------GGEGIVN-EDVLEVT 361
DK + L +++ S GD+R+AIT LQS ++L G G++ + + E
Sbjct: 202 DKSQGEDGVLNEVLKISNGDLRKAITYLQSASKLSTSLQLEDDQDGNAGLITKQSIRETA 261
Query: 362 GVIPNPWIEKLLKVDSFQVLEKYI---EDLILEAYSATQLFDQFHDIVM---SASSLSDK 415
GV+P+ I+ L+K + EK I D+IL +SA QL DQ H++++ S +SL
Sbjct: 262 GVLPDELIDSLIKTIRSKNEEKLISLVNDIILSGWSAQQLIDQLHEVLVIDDSINSLVKN 321
Query: 416 QKALILEKLAECNARLQDGASEYIQILDL 444
Q ALI L + + +L G E+IQ+L+L
Sbjct: 322 QIALI---LFDTDKKLNFGTDEHIQLLNL 347
>gi|156057403|ref|XP_001594625.1| hypothetical protein SS1G_04432 [Sclerotinia sclerotiorum 1980]
gi|154702218|gb|EDO01957.1| hypothetical protein SS1G_04432 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 412
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 153/352 (43%), Positives = 215/352 (61%), Gaps = 31/352 (8%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M +F +A S+ ++ K N+ PWVEKYRPK + DV Q ++VL++
Sbjct: 1 MASFFDIKARKAEAASNGTANIKEKPKGNNRMQPWVEKYRPKGLGDVTAQDHTITVLQRT 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
L ++LPH LFYGPPGTGKTST++A +L+G ++ + R+LELNASD+RGI ++R+KVK
Sbjct: 61 LQSSNLPHMLFYGPPGTGKTSTVLALAKELYGPELIKSRVLELNASDERGISIVREKVKD 120
Query: 120 FAQQTASGFN---QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
FA+ S + + PCPP+KI+ILDEADSMT AQ+ALRRTME ++ TRFCLICNY
Sbjct: 121 FARMQLSNPSPAYRQKYPCPPYKIIILDEADSMTQDAQSALRRTMETYSRITRFCLICNY 180
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
V+ II PL SRCSKFRFK L + + R++ I ++E V + A+E L+ S GD+R+AI
Sbjct: 181 VTRIIDPLASRCSKFRFKSLDKGNAVVRVKEIADKEGVKLEEGAVEALIRCSEGDLRKAI 240
Query: 237 TCLQSCARLKG------GEGIVNEDVLEV-------------TGVIPKPWIEKLLKVDS- 276
T LQS ARL G GEG NED ++V GVIP IEKL+K
Sbjct: 241 TYLQSAARLVGAISLKDGEGD-NEDKMDVDAKMVTVSSVEDIAGVIPDNTIEKLVKAMQP 299
Query: 277 ------FQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKAL 322
+ + K + D++ + +S TQ+ Q + ++ + ++D K AL
Sbjct: 300 KSRGVVYDAVSKVVVDMVADGWSGTQVVSQLYQTIVNSEFIADTHKNKIVAL 351
Score = 82.8 bits (203), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 81/150 (54%), Gaps = 27/150 (18%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKG------GEGIVNEDVLEV-------------T 361
A+E L+ S GD+R+AIT LQS ARL G GEG NED ++V
Sbjct: 224 AVEALIRCSEGDLRKAITYLQSAARLVGAISLKDGEGD-NEDKMDVDAKMVTVSSVEDIA 282
Query: 362 GVIPNPWIEKLLKVDS-------FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSD 414
GVIP+ IEKL+K + + K + D++ + +S TQ+ Q + ++++ ++D
Sbjct: 283 GVIPDNTIEKLVKAMQPKSRGVVYDAVSKVVVDMVADGWSGTQVVSQLYQTIVNSEFIAD 342
Query: 415 KQKALILEKLAECNARLQDGASEYIQILDL 444
K I+ +E + RL DGA E++ ILDL
Sbjct: 343 THKNKIVALFSEADKRLVDGADEHLTILDL 372
>gi|358388819|gb|EHK26412.1| hypothetical protein TRIVIDRAFT_63722 [Trichoderma virens Gv29-8]
Length = 378
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 149/310 (48%), Positives = 203/310 (65%), Gaps = 33/310 (10%)
Query: 24 TSGKTRNKPV-----PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTG 78
TS + ++KP PWVEKYRPK++DDV Q V+VL++ L ++LPH LFYGPPGTG
Sbjct: 18 TSSQKQDKPADVRAQPWVEKYRPKSLDDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTG 77
Query: 79 KTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKP 134
KTST++A +L+G +M + R+LELNASD+RGI ++R KVK FA+ + +D P
Sbjct: 78 KTSTILALAKELYGPEMIKSRVLELNASDERGISIVRQKVKDFARMQLTNPPPSYKDKYP 137
Query: 135 CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
CPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK
Sbjct: 138 CPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFK 197
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG------- 247
L ++ RL+ I E E V + A++ L++ S GD+R+AIT LQS ARL G
Sbjct: 198 SLDQSNAKKRLESIAEAEGVTLEDGAVDALIKCSEGDLRKAITFLQSAARLVGAKLSEKD 257
Query: 248 --GEGIVNED--------VLEVTGVIPKPWIEKLLKV-------DSFQVLEKYIEDLILE 290
G+ ++ D V ++ GVIP ++ L+K +++Q + K +EDL+ +
Sbjct: 258 SDGDDSMDVDKRPVTVKIVEDIAGVIPGATVDDLVKAMRPKSSGETYQSISKVVEDLVAD 317
Query: 291 AYSATQLFDQ 300
+SA Q+ Q
Sbjct: 318 GWSAGQVLYQ 327
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 82/149 (55%), Gaps = 27/149 (18%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKG---------GEGIVNED--------VLEVTGV 363
A++ L++ S GD+R+AIT LQS ARL G G+ ++ D V ++ GV
Sbjct: 223 AVDALIKCSEGDLRKAITFLQSAARLVGAKLSEKDSDGDDSMDVDKRPVTVKIVEDIAGV 282
Query: 364 IPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQ 416
IP ++ L+K +++Q + K +EDL+ + +SA Q+ + ++V ++ D Q
Sbjct: 283 IPGATVDDLVKAMRPKSSGETYQSISKVVEDLVADGWSAGQVL--YQELVFD-ETIPDIQ 339
Query: 417 KALILEKLAECNARLQDGASEYIQILDLG 445
K I+ +E + RL DGA E++ +LDL
Sbjct: 340 KNKIVLVFSEVDKRLVDGADEHLSVLDLS 368
>gi|145350673|ref|XP_001419724.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579956|gb|ABO98017.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 342
Score = 285 bits (729), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 143/289 (49%), Positives = 197/289 (68%), Gaps = 7/289 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
PWVEKYRP+ + DV Q+++V VL+ L ++PH LFYGPPGTGKT+T +A +L+G
Sbjct: 16 APWVEKYRPRVVKDVASQEQIVGVLENALKTGNMPHCLFYGPPGTGKTTTALAIAKELYG 75
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y++R+ ELNASD+RGI V+R+K+KTFA Q A G G P PP+KI+ILDEAD+MT
Sbjct: 76 PELYKQRVKELNASDERGISVVRNKIKTFASQ-AVGAPAPGYPSPPYKILILDEADAMTG 134
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ+ALRR ME +K TRF L+CNYV+ II P+ SRC+KFRF PLA+ TM RL++I EQ
Sbjct: 135 DAQSALRRMMETYSKVTRFFLLCNYVTKIIDPIASRCAKFRFSPLAQETMGARLKFIGEQ 194
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEK- 270
E + + SGGDMR+AIT LQS ARL G+ I ++EV G IP I+K
Sbjct: 195 EGLEMSDDVFAMCSKHSGGDMRKAITLLQSAARLFAGK-ISGASIVEVAGHIPDEKIKKM 253
Query: 271 --LLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
L + F+ + ++ED++ + +S ++ DQ+ D V L + SD+ KA
Sbjct: 254 YDLCREGKFEEAQAHMEDILRDGFSGLKILDQYSDYV-LEADCSDEVKA 301
Score = 82.0 bits (201), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 75/126 (59%), Gaps = 5/126 (3%)
Query: 329 SGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK---LLKVDSFQVLEKYI 385
SGGDMR+AIT LQS ARL G+ I ++EV G IP+ I+K L + F+ + ++
Sbjct: 211 SGGDMRKAITLLQSAARLFAGK-ISGASIVEVAGHIPDEKIKKMYDLCREGKFEEAQAHM 269
Query: 386 EDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 445
ED++ + +S ++ DQ+ D V+ A SD+ KA I KL E + L GA E +Q+ L
Sbjct: 270 EDILRDGFSGLKILDQYSDYVLEADC-SDEVKAEIFIKLGEVDRFLAQGADEGMQLATLV 328
Query: 446 SIVIKA 451
S IKA
Sbjct: 329 STSIKA 334
>gi|313229768|emb|CBY18583.1| unnamed protein product [Oikopleura dioica]
Length = 350
Score = 285 bits (728), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 151/322 (46%), Positives = 209/322 (64%), Gaps = 15/322 (4%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKP--VPWVEKYRPKTIDDVIEQQEVVSVLK 58
ME FL G S +K S + GK + P +PW+EKYRPK ++DV Q+EVV++LK
Sbjct: 1 MEQFLIGG-------SGAKAS-TGGGKKKAAPRVLPWIEKYRPKGVNDVCAQEEVVAMLK 52
Query: 59 KCL-SGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKV 117
L G +LP+ LFYGPPGTGKTST++A +FG++ ER+ ELNASD+RGI V+R+KV
Sbjct: 53 AVLIEGKELPNMLFYGPPGTGKTSTILAMARDMFGNLASERVCELNASDERGIAVVREKV 112
Query: 118 KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYV 177
K FA TA+ DGK CP FK++ILDEADSMT +AQ ALRRTME +KSTRFCL+CNYV
Sbjct: 113 KNFAMTTANSQRADGKKCPNFKLIILDEADSMTKSAQEALRRTMEVYSKSTRFCLLCNYV 172
Query: 178 SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAIT 237
S II P+TSR +KFRF+ L + ++++I E E+V A+E L+ + GDMRRA+
Sbjct: 173 SRIIDPITSRTAKFRFRLLPKEIQYNQIRHIREAENVQISENAVEELISVAAGDMRRAVN 232
Query: 238 CLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEAYSA 294
LQS RL E I +DV +V + P I++++ + S++ + ++ L+ + Y A
Sbjct: 233 FLQSLHRLHEDE-ITPDDVRDVAILCPAEKIDEVIREARSKSYENMLTKVQALLQDGYPA 291
Query: 295 TQLFDQFHDIVMLASSLSDKQK 316
Q Q D V+ ++ D QK
Sbjct: 292 GQFMHQLQDAVIADDAIEDFQK 313
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 74/131 (56%), Gaps = 4/131 (3%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDS 377
A+E L+ + GDMRRA+ LQS RL E I +DV +V + P I+++++ S
Sbjct: 215 AVEELISVAAGDMRRAVNFLQSLHRLHEDE-ITPDDVRDVAILCPAEKIDEVIREARSKS 273
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
++ + ++ L+ + Y A Q Q D V++ ++ D QK I+ ++ + + L DGA E
Sbjct: 274 YENMLTKVQALLQDGYPAGQFMHQLQDAVIADDAIEDFQKVNIINQIGKADHALTDGADE 333
Query: 438 YIQILDLGSIV 448
+QIL + S++
Sbjct: 334 KVQILAIVSVL 344
>gi|317027180|ref|XP_001400326.2| replication factor C subunit 2 [Aspergillus niger CBS 513.88]
Length = 389
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 148/334 (44%), Positives = 209/334 (62%), Gaps = 33/334 (9%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
+ SK + + + + K PWVEKYRPKT+DDV Q VL++ L ++LPH LFYGPP
Sbjct: 18 NPSKPKPTDNKEEQAKQQPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPP 77
Query: 76 GTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQT---ASGFNQD 131
GTGKTST++A LFG +YR RILELNASD+RGI ++R+K+K FA+ ++G ++
Sbjct: 78 GTGKTSTILALAKSLFGPSLYRSRILELNASDERGIGIVREKIKNFARAQLTHSTGLGEE 137
Query: 132 ---GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRC 188
PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II+PL SRC
Sbjct: 138 YLAQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRC 197
Query: 189 SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG 248
SKFRFK L RL++I + E++ + ++ L+ S GDMRRAIT +QS A+L G
Sbjct: 198 SKFRFKALDNTAAGERLEHIAKVENLRLEDGVVDKLIACSEGDMRRAITYMQSAAKLVGA 257
Query: 249 -------------------EGIVNEDVLEVTGVIPKPWIEKLLKV-------DSFQVLEK 282
E I + E+ GV+P+ ++ L++ S++ + K
Sbjct: 258 GRAGKKDEDEDEEMTDQESEVITVRTIEEIAGVVPESVLDALVQAMQPKKIGSSYEAVAK 317
Query: 283 YIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ D+I + +SATQL Q + V+ ++ D QK
Sbjct: 318 VVTDIIADGWSATQLLLQLYRRVVFNDAIPDIQK 351
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 26/150 (17%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGG-------------------EGIVNEDVLEVTG 362
++ L+ S GDMRRAIT +QS A+L G E I + E+ G
Sbjct: 230 VDKLIACSEGDMRRAITYMQSAAKLVGAGRAGKKDEDEDEEMTDQESEVITVRTIEEIAG 289
Query: 363 VIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDK 415
V+P ++ L++ S++ + K + D+I + +SATQL Q + V+ ++ D
Sbjct: 290 VVPESVLDALVQAMQPKKIGSSYEAVAKVVTDIIADGWSATQLLLQLYRRVVFNDAIPDI 349
Query: 416 QKALILEKLAECNARLQDGASEYIQILDLG 445
QK I+ ++ + RL DGA E++ ILD+
Sbjct: 350 QKNKIVMVFSDMDRRLVDGADEHLSILDVA 379
>gi|320032378|gb|EFW14331.1| DNA replication factor C subunit Rfc2 [Coccidioides posadasii str.
Silveira]
Length = 393
Score = 284 bits (726), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 147/335 (43%), Positives = 207/335 (61%), Gaps = 36/335 (10%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
SK+ + ++K PWVEKYRPKT+DDV Q V+VL++ L ++LPH LFYGPPGT
Sbjct: 21 SKSKSTADEADKSKLQPWVEKYRPKTLDDVAAQDHTVTVLQRTLQASNLPHMLFYGPPGT 80
Query: 78 GKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGK-- 133
GKTST++A LFG +YR RILELNASD+RGI ++R+K+K FA+ Q + D +
Sbjct: 81 GKTSTILALAKSLFGPKLYRSRILELNASDERGINIVREKIKDFARIQLSHPPAHDSEYR 140
Query: 134 ---PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190
PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II PL SRCSK
Sbjct: 141 KQYPCPPFKIIILDEADSMTQDAQSALRRTMERFSRITRFCLVCNYVTRIIDPLASRCSK 200
Query: 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG-- 248
FRFK L + TRL+ I + E + D ++ L+ S GD+RRAIT +QS ARL G
Sbjct: 201 FRFKSLDGSAAGTRLEEIAKTEKLRLDNGVVDALIRCSEGDLRRAITYMQSAARLVGSGL 260
Query: 249 -------------------EGIVN-EDVLEVTGVIPKPWIEKLLKV-------DSFQVLE 281
G++ + V E+ GV+P + +L+ ++ +
Sbjct: 261 SGKSGKDESGDEVMTDADQSGVITVQTVEEIAGVVPDKVVNRLIDAMQPKKGGSVYEGVA 320
Query: 282 KYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ + D++ + +SA Q+ Q + ++ S++D QK
Sbjct: 321 RVVTDIVADGWSAGQMLSQMYQAIVFNESIADIQK 355
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 29/153 (18%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGG---------------------EGIVN-EDVLE 359
++ L+ S GD+RRAIT +QS ARL G G++ + V E
Sbjct: 231 VDALIRCSEGDLRRAITYMQSAARLVGSGLSGKSGKDESGDEVMTDADQSGVITVQTVEE 290
Query: 360 VTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL 412
+ GV+P+ + +L+ ++ + + + D++ + +SA Q+ Q + ++ S+
Sbjct: 291 IAGVVPDKVVNRLIDAMQPKKGGSVYEGVARVVTDIVADGWSAGQMLSQMYQAIVFNESI 350
Query: 413 SDKQKALILEKLAECNARLQDGASEYIQILDLG 445
+D QK I+ +E + RL DGA E + ILDL
Sbjct: 351 ADIQKNDIVLVFSEYDKRLIDGADEQLSILDLA 383
>gi|258564276|ref|XP_002582883.1| activator 1 37 kDa subunit [Uncinocarpus reesii 1704]
gi|237908390|gb|EEP82791.1| activator 1 37 kDa subunit [Uncinocarpus reesii 1704]
Length = 395
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 211/337 (62%), Gaps = 38/337 (11%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKY--RPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
SK+ +T + +++ PWVEKY RPKT+DDV Q V+VL++ L ++LPH LFYGPP
Sbjct: 21 SKSKSTTGEEDKSRLQPWVEKYFSRPKTLDDVAAQDHTVTVLQRTLQASNLPHMLFYGPP 80
Query: 76 GTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGK 133
GTGKTST++A LFG +YR RILELNASD+RGI ++RDKVK FA+ Q + QD +
Sbjct: 81 GTGKTSTILALSKSLFGPKLYRSRILELNASDERGINIVRDKVKNFARTQLSHPPPQDSE 140
Query: 134 -----PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRC 188
PCPPFKI+ILDEADSMT AQAALRRTME+ +K TRFCL+CNYV+ II PL SRC
Sbjct: 141 YRKQYPCPPFKIIILDEADSMTQDAQAALRRTMERFSKITRFCLVCNYVTRIIDPLASRC 200
Query: 189 SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL--- 245
SKFRFK L + RL+ I + E + D ++ L+ S GD+RRA+T +QS ARL
Sbjct: 201 SKFRFKTLDGSAAGGRLEEIVKAEKLRVDDGVIDALIRCSEGDLRRAVTYMQSAARLVGS 260
Query: 246 ---------KGGE---------GIVN-EDVLEVTGVIPKPWIEKLLKV-------DSFQV 279
+GG+ G++ ++V E+ GV+P + +L+ ++
Sbjct: 261 GLAGKSGKDEGGDEEMPDADSSGVITVQNVEEIAGVVPDNVVNRLIDAMQPKKGGSVYEG 320
Query: 280 LEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ K + D++ + +SA Q+ Q + + S+ D QK
Sbjct: 321 VAKVVTDIVADGWSAGQILSQMYQATVFNESIPDIQK 357
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 78/152 (51%), Gaps = 29/152 (19%)
Query: 322 LETLVETSGGDMRRAITCLQSCARL------------KGGE---------GIVN-EDVLE 359
++ L+ S GD+RRA+T +QS ARL +GG+ G++ ++V E
Sbjct: 233 IDALIRCSEGDLRRAVTYMQSAARLVGSGLAGKSGKDEGGDEEMPDADSSGVITVQNVEE 292
Query: 360 VTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL 412
+ GV+P+ + +L+ ++ + K + D++ + +SA Q+ Q + + S+
Sbjct: 293 IAGVVPDNVVNRLIDAMQPKKGGSVYEGVAKVVTDIVADGWSAGQILSQMYQATVFNESI 352
Query: 413 SDKQKALILEKLAECNARLQDGASEYIQILDL 444
D QK I+ +E + RL DGA E + ILDL
Sbjct: 353 PDIQKNDIVMIFSEFDKRLIDGADEQLSILDL 384
>gi|336272567|ref|XP_003351040.1| hypothetical protein SMAC_04344 [Sordaria macrospora k-hell]
gi|380090807|emb|CCC04977.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 387
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 153/342 (44%), Positives = 210/342 (61%), Gaps = 34/342 (9%)
Query: 9 KLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH 68
K K A ++ ++ K + PWVEKYRPKT+ DV Q ++VL++ L +LPH
Sbjct: 8 KARKAAAANGTSNPEKQTKETPRAQPWVEKYRPKTLSDVTAQDHTITVLQRTLQATNLPH 67
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQ---T 124
LFYGPPGTGKTST++A +L+G ++ + R+LELNASD+RGI ++R+KVK FA+
Sbjct: 68 MLFYGPPGTGKTSTILALAKELYGPELIKSRVLELNASDERGISIVREKVKDFARMQLTN 127
Query: 125 ASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPL 184
S + PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL
Sbjct: 128 PSAAYKARYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPL 187
Query: 185 TSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244
SRCSKFRFK L + RL+ I + E V + A++ L++ S GD+R+AIT LQS AR
Sbjct: 188 ASRCSKFRFKSLDQGNAKKRLEEIAQLEGVGLEEGAVDALIKCSEGDLRKAITYLQSAAR 247
Query: 245 LKG-------------GEG---------IVNEDVLE-VTGVIPKPWIEKLLK-------V 274
L G GEG +V V+E + GVIP I++LLK
Sbjct: 248 LVGAVAATAKDGEQKEGEGGDEMEVDAKLVTVKVVEDIAGVIPDDTIQRLLKAMRPRAGA 307
Query: 275 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
D+++ + K +E+++ + +SA Q Q + V+ + D QK
Sbjct: 308 DTYRAVAKVVEEMVADGWSAGQTMTQLYQAVVYDEMIPDVQK 349
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 30/154 (19%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKG-------------GEG---------IVNEDVL 358
A++ L++ S GD+R+AIT LQS ARL G GEG +V V+
Sbjct: 223 AVDALIKCSEGDLRKAITYLQSAARLVGAVAATAKDGEQKEGEGGDEMEVDAKLVTVKVV 282
Query: 359 E-VTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS 410
E + GVIP+ I++LLK D+++ + K +E+++ + +SA Q Q + V+
Sbjct: 283 EDIAGVIPDDTIQRLLKAMRPRAGADTYRAVAKVVEEMVADGWSAGQTMTQLYQAVVYDE 342
Query: 411 SLSDKQKALILEKLAECNARLQDGASEYIQILDL 444
+ D QK I+ +E + RL DGA E++ ILDL
Sbjct: 343 MIPDVQKNKIVMVFSEVDKRLVDGADEHLSILDL 376
>gi|410079477|ref|XP_003957319.1| hypothetical protein KAFR_0E00300 [Kazachstania africana CBS 2517]
gi|372463905|emb|CCF58184.1| hypothetical protein KAFR_0E00300 [Kazachstania africana CBS 2517]
Length = 350
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 145/299 (48%), Positives = 198/299 (66%), Gaps = 13/299 (4%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
++ K + T G+ PWVEKYRPK +++V Q V+VLKK L A+LPH LFYGPP
Sbjct: 7 NAKKRRIDTEGENEQSK-PWVEKYRPKKLEEVTAQDHAVTVLKKTLESANLPHMLFYGPP 65
Query: 76 GTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG-- 132
GTGKTST++A +LFG ++ + R+LELNASD+RGI ++R+KVK FA+ T S +++
Sbjct: 66 GTGKTSTILALTKELFGPELAKTRVLELNASDERGISIVREKVKNFARLTVSKSSKEDLE 125
Query: 133 -KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
PCPP+KI+ILDEADSMT AQ+ALRRTME + TRFCLICNY++ II PL SRCSKF
Sbjct: 126 KYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYITRIIDPLASRCSKF 185
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKG 247
RFK L L RL+YI E+ESV + LE ++E S GD+RRAIT LQS ++ LK
Sbjct: 186 RFKSLEATNALDRLKYISEKESVQYEEGTLEKILEISQGDLRRAITLLQSASKRISYLK- 244
Query: 248 GEGIVNEDVLEVTGVIPKPWIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHD 303
E I V E+ GV+P + ++ + +++ Y++ I+ +S + +Q HD
Sbjct: 245 VEKIRILQVEELAGVVPTKILHEIAEKVATKDIKIIADYVDTFIISGWSGVSVLNQLHD 303
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 77/143 (53%), Gaps = 10/143 (6%)
Query: 311 LSDKQKALFK--ALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVI 364
+S+K+ ++ LE ++E S GD+RRAIT LQS ++ LK E I V E+ GV+
Sbjct: 202 ISEKESVQYEEGTLEKILEISQGDLRRAITLLQSASKRISYLKV-EKIRILQVEELAGVV 260
Query: 365 PNPWIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALIL 421
P + ++ + +++ Y++ I+ +S + +Q HD ++ K +
Sbjct: 261 PTKILHEIAEKVATKDIKIIADYVDTFIISGWSGVSVLNQLHDYYITNDDYDTDFKNKVS 320
Query: 422 EKLAECNARLQDGASEYIQILDL 444
L + +A+L +G +E+IQ+L+L
Sbjct: 321 WILFDTDAKLTNGTNEHIQLLNL 343
>gi|425784288|gb|EKV22076.1| Protein transport membrane glycoprotein Sec20, putative
[Penicillium digitatum Pd1]
Length = 780
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 149/319 (46%), Positives = 198/319 (62%), Gaps = 36/319 (11%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPKT+DDV Q VL++ L ++LPH LFYGPPGTGKTST++A LFG
Sbjct: 424 PWVEKYRPKTLDDVAAQDHTTKVLRRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGP 483
Query: 94 -MYRERILELNASDDRGIQVIRDKVKTFAQQTAS---GFNQDGK---PCPPFKIVILDEA 146
+YR RILELNASD+RGI ++RDKVK FA+ S G + + PCPPFKI+ILDEA
Sbjct: 484 ALYRSRILELNASDERGIGIVRDKVKNFARAQLSQPTGLDAAYRAQYPCPPFKIIILDEA 543
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
DSMT AQ+ALRRTME ++ TRFCL+CNYV+ II+PL SRCSKFRFK L N R+
Sbjct: 544 DSMTQDAQSALRRTMETYSRITRFCLVCNYVTRIIEPLASRCSKFRFKMLDNNAAGDRIS 603
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG------GEGIVNEDVL--- 257
I QE + + ++TL+ GD+RRAIT LQS ARL G G+ ++ V+
Sbjct: 604 NIAAQEGLRLEDGVVDTLIRCGEGDLRRAITYLQSAARLVGATKPPTGKDADDDAVMTDA 663
Query: 258 -------------EVTGVIPKPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQL 297
E+ GV+P+ ++ L++ ++ + I DL+ + +SATQL
Sbjct: 664 GSNSSVITVRTIEEIAGVLPEEILDSLVEAMQPKSGGSVYEAISGVITDLVADGWSATQL 723
Query: 298 FDQFHDIVMLASSLSDKQK 316
Q + V+ ++ D QK
Sbjct: 724 VGQLYRRVVFNEAIPDIQK 742
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 29/152 (19%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKG------GEGIVNEDVL----------------E 359
++TL+ GD+RRAIT LQS ARL G G+ ++ V+ E
Sbjct: 618 VDTLIRCGEGDLRRAITYLQSAARLVGATKPPTGKDADDDAVMTDAGSNSSVITVRTIEE 677
Query: 360 VTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL 412
+ GV+P ++ L++ ++ + I DL+ + +SATQL Q + V+ ++
Sbjct: 678 IAGVLPEEILDSLVEAMQPKSGGSVYEAISGVITDLVADGWSATQLVGQLYRRVVFNEAI 737
Query: 413 SDKQKALILEKLAECNARLQDGASEYIQILDL 444
D QK I+ +E + RL DG+ E++ +LDL
Sbjct: 738 PDIQKNKIVMLFSEMDKRLVDGSDEHLSMLDL 769
>gi|403350390|gb|EJY74655.1| ATPase, AAA family protein [Oxytricha trifallax]
Length = 374
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 151/358 (42%), Positives = 220/358 (61%), Gaps = 29/358 (8%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVST---------------SGKTRNKPVPWVEKYRPKTID 45
M+ FL+ K+ SSS ++T S +R K PWVEKYRP ++
Sbjct: 1 MDKFLKGSNPTKNLGSSSGIQINTRTNQTQDHEMKDQTQSAPSRPKFTPWVEKYRPSKVE 60
Query: 46 DVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNA 104
+V Q EVVS L++ + +PH +FYGPPGTGKTST++A +LFG + +++R+LELNA
Sbjct: 61 EVSHQTEVVSALRQSILTGQVPHLMFYGPPGTGKTSTILALSKELFGHEFFKQRVLELNA 120
Query: 105 SDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE 164
SD+RGI ++R+K+K FAQ+ S CPP +I+ILDEADSMT AQAALRR +E+
Sbjct: 121 SDERGIAIVREKIKKFAQRKISKHPDSSFQCPPIQIIILDEADSMTIDAQAALRRIIEQY 180
Query: 165 TKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV-MCDFKALET 223
+ +TRFC+ICNY+S II PL SRC KFRF P+A+ + RL+ ICE+E+V +
Sbjct: 181 STNTRFCIICNYISKIIDPLASRCVKFRFSPIAKEAQIERLKMICERENVNVASDNVFNA 240
Query: 224 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV----DSFQV 279
LV+ S GD+RR+I LQ+ + K + V +D+ ++GV+P+ I K+ +V D F
Sbjct: 241 LVDISAGDLRRSINTLQTASSFKLQQLNV-KDIESISGVVPEDVIRKIERVVTQTDGFSE 299
Query: 280 LEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVET-----SGGD 332
+++ ++LIL+ + QL Q D ++ LSD +KA + E + ET GGD
Sbjct: 300 VQQLTQELILDGFDVQQLMIQMLDYFLINDKLSDLKKA--RISEIVAETDVKVIQGGD 355
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 5/125 (4%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV----DS 377
LV+ S GD+RR+I LQ+ + K + V +D+ ++GV+P I K+ +V D
Sbjct: 238 FNALVDISAGDLRRSINTLQTASSFKLQQLNV-KDIESISGVVPEDVIRKIERVVTQTDG 296
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
F +++ ++LIL+ + QL Q D + LSD +KA I E +AE + ++ G E
Sbjct: 297 FSEVQQLTQELILDGFDVQQLMIQMLDYFLINDKLSDLKKARISEIVAETDVKVIQGGDE 356
Query: 438 YIQIL 442
+ +L
Sbjct: 357 ELNLL 361
>gi|425778430|gb|EKV16557.1| Protein transport membrane glycoprotein Sec20, putative
[Penicillium digitatum PHI26]
Length = 780
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 149/319 (46%), Positives = 198/319 (62%), Gaps = 36/319 (11%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPKT+DDV Q VL++ L ++LPH LFYGPPGTGKTST++A LFG
Sbjct: 424 PWVEKYRPKTLDDVAAQDHTTKVLRRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGP 483
Query: 94 -MYRERILELNASDDRGIQVIRDKVKTFAQQTAS---GFNQDGK---PCPPFKIVILDEA 146
+YR RILELNASD+RGI ++RDKVK FA+ S G + + PCPPFKI+ILDEA
Sbjct: 484 ALYRSRILELNASDERGIGIVRDKVKNFARAQLSQPTGLDAAYRAQYPCPPFKIIILDEA 543
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
DSMT AQ+ALRRTME ++ TRFCL+CNYV+ II+PL SRCSKFRFK L N R+
Sbjct: 544 DSMTQDAQSALRRTMETYSRITRFCLVCNYVTRIIEPLASRCSKFRFKMLDNNAAGDRIS 603
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG------GEGIVNEDVL--- 257
I QE + + ++TL+ GD+RRAIT LQS ARL G G+ ++ V+
Sbjct: 604 NIAAQEGLRLEDGVVDTLIRCGEGDLRRAITYLQSAARLVGATKPPTGKDADDDAVMTDA 663
Query: 258 -------------EVTGVIPKPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQL 297
E+ GV+P+ ++ L++ ++ + I DL+ + +SATQL
Sbjct: 664 GSNSSVITVRTIEEIAGVLPEEILDSLVEAMQPKSGGSVYEAISGVITDLVADGWSATQL 723
Query: 298 FDQFHDIVMLASSLSDKQK 316
Q + V+ ++ D QK
Sbjct: 724 VGQLYRRVVFNEAIPDIQK 742
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 29/152 (19%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKG------GEGIVNEDVL----------------E 359
++TL+ GD+RRAIT LQS ARL G G+ ++ V+ E
Sbjct: 618 VDTLIRCGEGDLRRAITYLQSAARLVGATKPPTGKDADDDAVMTDAGSNSSVITVRTIEE 677
Query: 360 VTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL 412
+ GV+P ++ L++ ++ + I DL+ + +SATQL Q + V+ ++
Sbjct: 678 IAGVLPEEILDSLVEAMQPKSGGSVYEAISGVITDLVADGWSATQLVGQLYRRVVFNEAI 737
Query: 413 SDKQKALILEKLAECNARLQDGASEYIQILDL 444
D QK I+ +E + RL DG+ E++ +LDL
Sbjct: 738 PDIQKNKIVMLFSEMDKRLVDGSDEHLSMLDL 769
>gi|225562412|gb|EEH10691.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 394
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 144/320 (45%), Positives = 201/320 (62%), Gaps = 37/320 (11%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+DDV Q+ V+VL++ L ++LPH LFYGPPGTGKTST++A L+G
Sbjct: 36 PWVEKYRPKTLDDVASQEHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLYGP 95
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTAS------GFNQDGKPCPPFKIVILDEA 146
+YR RILELNASD+RGI ++R+K+K FA+ S ++ PCPPFKI+ILDEA
Sbjct: 96 QLYRSRILELNASDERGISIVREKIKDFARMQLSHPPLSDSAYREKYPCPPFKIIILDEA 155
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
DSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II PL SRCSKFRFK L + RL+
Sbjct: 156 DSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGCRLE 215
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG------------------ 248
I E + + TL+ S GD+RRAIT LQS ARL G
Sbjct: 216 EIARMEKLRLADGCIRTLIRCSEGDLRRAITYLQSAARLVGSTEGTKQGGKDESGDTEMA 275
Query: 249 ----EGIVN-EDVLEVTGVIPKPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQ 296
+GI+ + + E+ GV+P +++L+K S++ + + + D++ + +SA+Q
Sbjct: 276 DAGEDGIITVKTIEEIAGVVPDDVVDRLIKALQPKKGRSSYEAVSQVVTDIVADGWSASQ 335
Query: 297 LFDQFHDIVMLASSLSDKQK 316
+ Q + I++ S+ D K
Sbjct: 336 MLTQLYQIIVFDDSIPDIHK 355
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 81/153 (52%), Gaps = 30/153 (19%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGG----------------------EGIVN-EDVL 358
+ TL+ S GD+RRAIT LQS ARL G +GI+ + +
Sbjct: 230 IRTLIRCSEGDLRRAITYLQSAARLVGSTEGTKQGGKDESGDTEMADAGEDGIITVKTIE 289
Query: 359 EVTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASS 411
E+ GV+P+ +++L+K S++ + + + D++ + +SA+Q+ Q + I++ S
Sbjct: 290 EIAGVVPDDVVDRLIKALQPKKGRSSYEAVSQVVTDIVADGWSASQMLTQLYQIIVFDDS 349
Query: 412 LSDKQKALILEKLAECNARLQDGASEYIQILDL 444
+ D K I+ +E + RL DGA E++ +LDL
Sbjct: 350 IPDIHKNSIVMVFSEFDKRLIDGADEHLTLLDL 382
>gi|119177342|ref|XP_001240460.1| hypothetical protein CIMG_07623 [Coccidioides immitis RS]
gi|303316031|ref|XP_003068020.1| Activator 1 41 kDa subunit , putative [Coccidioides posadasii C735
delta SOWgp]
gi|240107696|gb|EER25875.1| Activator 1 41 kDa subunit , putative [Coccidioides posadasii C735
delta SOWgp]
Length = 393
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 147/335 (43%), Positives = 206/335 (61%), Gaps = 36/335 (10%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
SK+ + ++K PWVEKYRPKT+DDV Q V+VL++ L ++LPH LFYGPPGT
Sbjct: 21 SKSKSTADEADKSKLQPWVEKYRPKTLDDVAAQDHTVTVLQRTLQASNLPHMLFYGPPGT 80
Query: 78 GKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGK-- 133
GKTST++A LFG +YR RILELNASD+RGI ++R+K+K FA+ Q + D +
Sbjct: 81 GKTSTILALAKSLFGPKLYRSRILELNASDERGINIVREKIKDFARIQLSHPPAHDSEYR 140
Query: 134 ---PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190
PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II PL SRCSK
Sbjct: 141 KQYPCPPFKIIILDEADSMTQDAQSALRRTMERFSRITRFCLVCNYVTRIIDPLASRCSK 200
Query: 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG-- 248
FRFK L + TRL+ I + E + D ++ L+ S GD+RRAIT +QS ARL G
Sbjct: 201 FRFKSLDGSAAGTRLEEIAKTEKLRLDNGVVDALIRCSEGDLRRAITYMQSAARLVGSGL 260
Query: 249 -------------------EGIVN-EDVLEVTGVIPKPWIEKLLKV-------DSFQVLE 281
G++ + V E+ GV+P + +L+ ++ +
Sbjct: 261 SGKSGKDESGDEVMTDADQSGVITVQTVEEIAGVVPDKVVNRLIDAMQPKKGGSVYEGVA 320
Query: 282 KYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ + D++ + +SA Q+ Q + ++ S+ D QK
Sbjct: 321 RVVTDIVADGWSAGQMLSQMYQAIVFNESIPDIQK 355
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 75/153 (49%), Gaps = 29/153 (18%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGG---------------------EGIVN-EDVLE 359
++ L+ S GD+RRAIT +QS ARL G G++ + V E
Sbjct: 231 VDALIRCSEGDLRRAITYMQSAARLVGSGLSGKSGKDESGDEVMTDADQSGVITVQTVEE 290
Query: 360 VTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL 412
+ GV+P+ + +L+ ++ + + + D++ + +SA Q+ Q + ++ S+
Sbjct: 291 IAGVVPDKVVNRLIDAMQPKKGGSVYEGVARVVTDIVADGWSAGQMLSQMYQAIVFNESI 350
Query: 413 SDKQKALILEKLAECNARLQDGASEYIQILDLG 445
D QK I+ +E + RL DGA E + ILDL
Sbjct: 351 PDIQKNDIVLVFSEYDKRLIDGADEQLSILDLA 383
>gi|448098395|ref|XP_004198917.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
gi|359380339|emb|CCE82580.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
Length = 360
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 141/307 (45%), Positives = 198/307 (64%), Gaps = 24/307 (7%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
R + PWVEKYRPK +D+V Q+ V +LKK L A+LPH LFYGPPGTGKTST++A
Sbjct: 14 RIEHTPWVEKYRPKNLDEVASQEHTVKILKKTLESANLPHMLFYGPPGTGKTSTILALAK 73
Query: 89 QLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQ---QTASGFNQDGKPCPPFKIVILD 144
QL+G +++ R+LELNASD+RGI ++R KVK FA+ AS + + PCPP+K++ILD
Sbjct: 74 QLYGPRLFKSRVLELNASDERGISIVRQKVKNFARLAVSNASKEDLENYPCPPYKLIILD 133
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EADSMT+ AQ+ALRRT+E + TRFCLICNY++ II PL+SRCSKFRF L L+R
Sbjct: 134 EADSMTNDAQSALRRTIENYSGVTRFCLICNYITRIIDPLSSRCSKFRFGLLNNENALSR 193
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG-------------- 250
++YI E+E++ D ETL+ S GD+R+AIT LQS +RL
Sbjct: 194 IKYIVEKENLNVDEDVPETLLSISNGDLRKAITFLQSASRLSFALANPDDSEDRMHVDEE 253
Query: 251 ---IVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDI 304
I + E+ G+IP +++L+ + + + + +++ IL +SA Q+ DQ HD
Sbjct: 254 HGKITKSAIQEIAGIIPDDILKRLVTIIEKGNTREIFNTVQEFILGGWSAQQVLDQLHDS 313
Query: 305 VMLASSL 311
++ SL
Sbjct: 314 YVMNHSL 320
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 323 ETLVETSGGDMRRAITCLQSCARLKGGEG-----------------IVNEDVLEVTGVIP 365
ETL+ S GD+R+AIT LQS +RL I + E+ G+IP
Sbjct: 211 ETLLSISNGDLRKAITFLQSASRLSFALANPDDSEDRMHVDEEHGKITKSAIQEIAGIIP 270
Query: 366 NPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILE 422
+ +++L+ + + + + +++ IL +SA Q+ DQ HD + SL + K I
Sbjct: 271 DDILKRLVTIIEKGNTREIFNTVQEFILGGWSAQQVLDQLHDSYVMNHSLRPELKNKIAL 330
Query: 423 KLAECNARLQDGASEYIQILDLGSIVIKA 451
L + +L G E+IQ+L+ V KA
Sbjct: 331 VLFSSDCKLNSGTDEHIQLLNFCLQVAKA 359
>gi|240281117|gb|EER44620.1| DNA replication factor C subunit Rfc2 [Ajellomyces capsulatus H143]
gi|325092385|gb|EGC45695.1| activator 1 41 kDa subunit [Ajellomyces capsulatus H88]
Length = 394
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 144/320 (45%), Positives = 200/320 (62%), Gaps = 37/320 (11%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+DDV Q+ V+VL++ L ++LPH LFYGPPGTGKTST++A L+G
Sbjct: 36 PWVEKYRPKTLDDVASQEHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLYGP 95
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTAS------GFNQDGKPCPPFKIVILDEA 146
+YR RILELNASD+RGI ++R+K+K FA+ S ++ PCPPFKI+ILDEA
Sbjct: 96 QLYRSRILELNASDERGISIVREKIKDFARMQLSHPPLSDSAYREKYPCPPFKIIILDEA 155
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
DSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II PL SRCSKFRFK L + RL+
Sbjct: 156 DSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGCRLE 215
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG------------------ 248
I E + + TL+ S GD+RRAIT LQS ARL G
Sbjct: 216 EIARMEKLRLADGCIRTLIRCSEGDLRRAITYLQSAARLVGSTEGTKQGGKDESGDTEMA 275
Query: 249 ----EGIVN-EDVLEVTGVIPKPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQ 296
+GI+ + + E+ GV+P +++L+K S++ + + D++ + +SA+Q
Sbjct: 276 DAGEDGIITVKTIEEIAGVVPDDVVDRLIKALQPKKGRSSYEAVSHVVTDIVADGWSASQ 335
Query: 297 LFDQFHDIVMLASSLSDKQK 316
+ Q + I++ S+ D K
Sbjct: 336 MLTQLYQIIVFDDSIPDIHK 355
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 80/153 (52%), Gaps = 30/153 (19%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGG----------------------EGIVN-EDVL 358
+ TL+ S GD+RRAIT LQS ARL G +GI+ + +
Sbjct: 230 IRTLIRCSEGDLRRAITYLQSAARLVGSTEGTKQGGKDESGDTEMADAGEDGIITVKTIE 289
Query: 359 EVTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASS 411
E+ GV+P+ +++L+K S++ + + D++ + +SA+Q+ Q + I++ S
Sbjct: 290 EIAGVVPDDVVDRLIKALQPKKGRSSYEAVSHVVTDIVADGWSASQMLTQLYQIIVFDDS 349
Query: 412 LSDKQKALILEKLAECNARLQDGASEYIQILDL 444
+ D K I+ +E + RL DGA E++ +LDL
Sbjct: 350 IPDIHKNSIVMVFSEFDKRLIDGADEHLTLLDL 382
>gi|38567232|emb|CAE76524.1| probable replication factor protein [Neurospora crassa]
Length = 366
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 144/296 (48%), Positives = 199/296 (67%), Gaps = 13/296 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+ DV Q ++VL++ L ++LPH LFYGPPGTGKTST++A +L+G
Sbjct: 33 PWVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGP 92
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQ---TASGFNQDGKPCPPFKIVILDEADSM 149
++ + R+LELNASD+RGI ++R+KVK FA+ S + PCPPFK++ILDEADSM
Sbjct: 93 ELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSAAYKARYPCPPFKLIILDEADSM 152
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK L + RL+ I
Sbjct: 153 TQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLEEIA 212
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG-IVNEDVLE-VTGVIPKPW 267
+ E V + A++ L++ S GD+R+AIT LQS ARL + +V V+E + GVIP
Sbjct: 213 QLEGVGLEEGAVDALIKCSEGDLRKAITYLQSAARLMEVDAKLVTVKVVEDIAGVIPDDT 272
Query: 268 IEKLLK-------VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
I++LL+ VD++ + K +E+++ + +SA Q Q + V+ + D QK
Sbjct: 273 IQRLLEAMRPRAGVDTYPAVAKVVEEMVADGWSAGQTMTQLYQAVVFDEMIPDVQK 328
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 80/134 (59%), Gaps = 9/134 (6%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEG-IVNEDVLE-VTGVIPNPWIEKLLK---- 374
A++ L++ S GD+R+AIT LQS ARL + +V V+E + GVIP+ I++LL+
Sbjct: 223 AVDALIKCSEGDLRKAITYLQSAARLMEVDAKLVTVKVVEDIAGVIPDDTIQRLLEAMRP 282
Query: 375 ---VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 431
VD++ + K +E+++ + +SA Q Q + V+ + D QK I+ +E + RL
Sbjct: 283 RAGVDTYPAVAKVVEEMVADGWSAGQTMTQLYQAVVFDEMIPDVQKNKIVMVFSEVDKRL 342
Query: 432 QDGASEYIQILDLG 445
DGA E++ +LDL
Sbjct: 343 VDGADEHLSVLDLA 356
>gi|325181066|emb|CCA15478.1| replication factor C subunit 4 putative [Albugo laibachii Nc14]
Length = 333
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 142/290 (48%), Positives = 196/290 (67%), Gaps = 10/290 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PW+EKYRPK I+D+ Q+ VV+ L++ ++ LPH LFYGPPGTGKTST++A +L+G
Sbjct: 10 LPWIEKYRPKVINDISHQEHVVATLRQSIASGQLPHLLFYGPPGTGKTSTIVAVARELYG 69
Query: 93 DMYRE--RILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+ +R+ R LELNASDDRGI+V+R+KVK FAQ G + P FKI++LDEADSMT
Sbjct: 70 NDFRKNGRYLELNASDDRGIKVVREKVKLFAQ----GAINSSESMPAFKIIVLDEADSMT 125
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
+ AQ+ALRR ME +K TRFCLICNYVS II P+ SRC KFRF PL + +M RL YI
Sbjct: 126 NDAQSALRRMMEDYSKVTRFCLICNYVSRIIDPIASRCVKFRFSPLTKESMAARLSYIGS 185
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEK 270
QE++ D ++TL++ + GD+R+AI +QS AR GG+ + N++++ V G+ PK +E
Sbjct: 186 QENLRLDDDIIDTLLDCANGDLRKAINLMQS-ARQTGGKELTNDEIVAVAGLAPKELLEN 244
Query: 271 LLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
K +SF + IE ++L Y + Q + +M S LSD QKA
Sbjct: 245 FWKAIAGNSFDSMRTEIESILLSGYPTLTILHQLSEDIMKRSELSDIQKA 294
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 74/125 (59%), Gaps = 4/125 (3%)
Query: 329 SGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYI 385
+ GD+R+AI +QS AR GG+ + N++++ V G+ P +E K +SF + I
Sbjct: 203 ANGDLRKAINLMQS-ARQTGGKELTNDEIVAVAGLAPKELLENFWKAIAGNSFDSMRTEI 261
Query: 386 EDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 445
E ++L Y + Q + +M S LSD QKA ++AE +++L DGASEY Q+ D+G
Sbjct: 262 ESILLSGYPTLTILHQLSEDIMKRSELSDIQKARSCLRIAEADSKLIDGASEYFQLFDVG 321
Query: 446 SIVIK 450
S +++
Sbjct: 322 SYIMR 326
>gi|401884137|gb|EJT48309.1| DNA replication factor (activator 1 subunit) [Trichosporon asahii
var. asahii CBS 2479]
Length = 389
Score = 282 bits (721), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 154/369 (41%), Positives = 217/369 (58%), Gaps = 59/369 (15%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTIDDV Q V+VL+K L +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 19 PWVEKYRPKTIDDVSSQDNTVAVLRKALMSTNLPHMLFYGPPGTGKTSTILALARQLFGP 78
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTA---SGFNQDGK--PCPPFKIVILDEAD 147
D+++ R+LELNASD+RGI V+R+K+KTFA++T G DGK PCPP+K++ILDEAD
Sbjct: 79 DLFKSRVLELNASDERGISVVREKIKTFARETPRHNPGVASDGKEYPCPPYKLIILDEAD 138
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
SMT AQ+ALRR ME ++ TRFCL+CNYV+ II+P+ SRCSKFRF+PL +++ R++
Sbjct: 139 SMTQDAQSALRRIMETYSRITRFCLVCNYVTRIIEPVASRCSKFRFRPLEQSSSQARMEM 198
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE------------- 254
I E E V D LE +++ +GGD+R+AIT LQ+ RL
Sbjct: 199 IAENEGVQADPGVLELILQLAGGDLRKAITYLQTAQRLHQASDPPTPITAMSGKSSSAPA 258
Query: 255 -----------------DVLEVTGVIPKPWIEKLLK--------------VDSFQVLEKY 283
V E++GV+ I+ LL+ + F+ + K
Sbjct: 259 LPTAFFPLSYLKPSELTAVHEISGVVSSSVIDNLLRSMGIEPGSGLNPTLANGFEGVRKA 318
Query: 284 IEDLILEAYSATQLFDQFHDIVMLASSL-----SDKQKALFKALETLVETSGGDMRRAIT 338
+ + E +S Q+ +Q HD ++ +++ S+ A+ + + L E GGD +
Sbjct: 319 VRSVGREGWSTGQVLEQVHDALIPLAAIPTIAKSNAALAIAECDKALCE--GGD--EELQ 374
Query: 339 CLQSCARLK 347
L+ C R+K
Sbjct: 375 LLECCLRIK 383
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 44/166 (26%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNE-------------------------- 355
LE +++ +GGD+R+AIT LQ+ RL
Sbjct: 212 LELILQLAGGDLRKAITYLQTAQRLHQASDPPTPITAMSGKSSSAPALPTAFFPLSYLKP 271
Query: 356 ----DVLEVTGVIPNPWIEKLLK--------------VDSFQVLEKYIEDLILEAYSATQ 397
V E++GV+ + I+ LL+ + F+ + K + + E +S Q
Sbjct: 272 SELTAVHEISGVVSSSVIDNLLRSMGIEPGSGLNPTLANGFEGVRKAVRSVGREGWSTGQ 331
Query: 398 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILD 443
+ +Q HD ++ +++ K+ +AEC+ L +G E +Q+L+
Sbjct: 332 VLEQVHDALIPLAAIPTIAKSNAALAIAECDKALCEGGDEELQLLE 377
>gi|395528003|ref|XP_003766124.1| PREDICTED: replication factor C subunit 4 [Sarcophilus harrisii]
Length = 302
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 142/261 (54%), Positives = 182/261 (69%), Gaps = 6/261 (2%)
Query: 65 DLPHFLFYGPPGTGK---TSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFA 121
D P L +GPP + + H +++R+R+LELNASD+RGIQVIR+KVKTFA
Sbjct: 5 DTPISLAFGPPISDHWLPLPSQATKMHSYGPELFRQRVLELNASDERGIQVIREKVKTFA 64
Query: 122 QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCII 181
Q T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICNYVS II
Sbjct: 65 QLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRII 124
Query: 182 QPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
+PLTSRCSKFRFKPL++ RL I E+E+V + + LV+ S GD+R+AIT LQS
Sbjct: 125 EPLTSRCSKFRFKPLSDKIQYQRLLDISEKENVKISNEGISYLVKVSEGDLRKAITFLQS 184
Query: 242 CARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLF 298
RL GG+ + + + E+ GV+P I + SF+ LE ++DLI E ++ATQL
Sbjct: 185 ATRLTGGQEVTEKVITEIAGVVPTETINGIFSACQSGSFEKLEAIVKDLIDEGHAATQLI 244
Query: 299 DQFHDIVMLASSLSDKQKALF 319
+Q HD+V+ L+DKQK++
Sbjct: 245 NQLHDVVVEKEDLTDKQKSVI 265
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 87/134 (64%), Gaps = 3/134 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+ + LV+ S GD+R+AIT LQS RL GG+ + + + E+ GV+P I +
Sbjct: 162 EGISYLVKVSEGDLRKAITFLQSATRLTGGQEVTEKVITEIAGVVPTETINGIFSACQSG 221
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
SF+ LE ++DLI E ++ATQL +Q HD+V+ L+DKQK++I EKLAE + L DGA
Sbjct: 222 SFEKLEAIVKDLIDEGHAATQLINQLHDVVVEKEDLTDKQKSVIAEKLAEMDKCLADGAD 281
Query: 437 EYIQILDLGSIVIK 450
E++Q++ L + V++
Sbjct: 282 EHLQLISLCATVMQ 295
>gi|354544379|emb|CCE41102.1| hypothetical protein CPAR2_300910 [Candida parapsilosis]
Length = 357
Score = 281 bits (719), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 141/304 (46%), Positives = 195/304 (64%), Gaps = 25/304 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK ++D+ Q+ V VL+K +S +LPH LFYGPPGTGKTST++A QL+G
Sbjct: 15 PWVEKYRPKNLNDIASQEHAVKVLEKQVSTGNLPHMLFYGPPGTGKTSTILALAKQLYGP 74
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD---GKPCPPFKIVILDEADSM 149
++Y+ R+LELNASD+RGI ++R K+K FA+ T S + PCPP+KI+ILDEADSM
Sbjct: 75 NLYKSRVLELNASDERGISIVRQKIKNFARLTVSNPTPEDLKNYPCPPYKIIILDEADSM 134
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+ AQ+ALRRTME TRF L+CNY++ II PL SRCSKFRFK L L RL+YI
Sbjct: 135 TNDAQSALRRTMETYANITRFALVCNYITRIIDPLASRCSKFRFKLLNSENSLNRLKYIA 194
Query: 210 EQESVMCDFK-----ALETLVETSGGDMRRAITCLQSCARL---------KGGEG----I 251
+E + D L ++ S GD+R+AIT LQS ++L + G+G I
Sbjct: 195 NEEHLNLDKSQGEDAVLNEVLRISNGDLRKAITYLQSASKLSTSLQLEDDEDGDGKAGLI 254
Query: 252 VNEDVLEVTGVIPKPWIEKLLKVDSFQVLEKY---IEDLILEAYSATQLFDQFHDIVMLA 308
+ + E GV+P I+ L+K + EK + D+I +SA QL DQ H+++++
Sbjct: 255 TKQSIRETAGVLPDDLIDNLVKTIRSKNEEKLVAVVNDVISSGWSAQQLIDQLHEVLVMD 314
Query: 309 SSLS 312
S++
Sbjct: 315 DSIN 318
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 80/151 (52%), Gaps = 22/151 (14%)
Query: 313 DKQKALFKALETLVETSGGDMRRAITCLQSCARL---------KGGEG----IVNEDVLE 359
DK + L ++ S GD+R+AIT LQS ++L + G+G I + + E
Sbjct: 202 DKSQGEDAVLNEVLRISNGDLRKAITYLQSASKLSTSLQLEDDEDGDGKAGLITKQSIRE 261
Query: 360 VTGVIPNPWIEKLLKVDSFQVLEKYI---EDLILEAYSATQLFDQFHDIVM---SASSLS 413
GV+P+ I+ L+K + EK + D+I +SA QL DQ H++++ S +SL
Sbjct: 262 TAGVLPDDLIDNLVKTIRSKNEEKLVAVVNDVISSGWSAQQLIDQLHEVLVMDDSINSLV 321
Query: 414 DKQKALILEKLAECNARLQDGASEYIQILDL 444
Q ALI L + + +L G E+IQ+L+L
Sbjct: 322 KNQIALI---LFDTDKKLNFGTDEHIQLLNL 349
>gi|374109199|gb|AEY98105.1| FAFR422Wp [Ashbya gossypii FDAG1]
Length = 349
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 140/293 (47%), Positives = 195/293 (66%), Gaps = 10/293 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRP+ +DDV Q ++VLK+ L A+LPH LFYGPPGTGKTST++A +LFG
Sbjct: 23 PWVEKYRPRKLDDVASQAHAITVLKRTLESANLPHMLFYGPPGTGKTSTILALTKELFGP 82
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG---KPCPPFKIVILDEADSM 149
+ + R+LELNASD+RGI ++R+KVK FA+ T + ++ PCPP+KI+ILDEADSM
Sbjct: 83 SLMKSRVLELNASDERGISIVREKVKNFARLTVTNPTKEDLEQYPCPPYKIIILDEADSM 142
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFKPL L RL+ I
Sbjct: 143 TADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNVNALGRLEQIA 202
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK---GGEGIVNEDVLEVTGVIPKP 266
+QE++ + ALE ++ + GD+R+AIT LQ+ A++ E I V E+ GV+P
Sbjct: 203 QQEALSYEAGALEKVLHIAEGDLRKAITLLQTAAKMTSYMAAEKITTAQVEELAGVVPDD 262
Query: 267 WIEKLL-KVDSFQVLE--KYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
I+ L+ K++S + E K++ ++ + + + Q HD + L ++K
Sbjct: 263 IIKGLVEKIESKDLTEITKFVNKVVKSGWCGSSIISQLHDYYAENNELDAEKK 315
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 73/131 (55%), Gaps = 6/131 (4%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLK---GGEGIVNEDVLEVTGVIPNPWIEKLL-KVD 376
ALE ++ + GD+R+AIT LQ+ A++ E I V E+ GV+P+ I+ L+ K++
Sbjct: 213 ALEKVLHIAEGDLRKAITLLQTAAKMTSYMAAEKITTAQVEELAGVVPDDIIKGLVEKIE 272
Query: 377 SFQVLE--KYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
S + E K++ ++ + + + Q HD + L ++K I L + ++RL +G
Sbjct: 273 SKDLTEITKFVNKVVKSGWCGSSIISQLHDYYAENNELDAEKKTKIFLLLFKTDSRLSNG 332
Query: 435 ASEYIQILDLG 445
E+IQ+LDL
Sbjct: 333 TDEHIQLLDLA 343
>gi|346979302|gb|EGY22754.1| replication factor C subunit 2 [Verticillium dahliae VdLs.17]
Length = 380
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 142/308 (46%), Positives = 198/308 (64%), Gaps = 25/308 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+ DV Q V++L++ L ++LPH LFYGPPGTGKTST++A +L+G
Sbjct: 34 PWVEKYRPKTLSDVTAQDHTVTILQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGP 93
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK---PCPPFKIVILDEADSM 149
++ + R+LELNASD+RGI ++R+KVK FA+ + + K PCPPFKI+ILDEADSM
Sbjct: 94 ELIKTRVLELNASDERGISIVREKVKNFARMQLTNPTAEYKKRYPCPPFKIIILDEADSM 153
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK L + RL+ I
Sbjct: 154 TQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKRRLEEIA 213
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-------------- 255
+ E V + A++ L++ S GD+R+AIT LQS ARL G + D
Sbjct: 214 KNEGVELEEGAVDALIKCSEGDLRKAITFLQSAARLVGATENADGDQSMDVDKKPITVKI 273
Query: 256 VLEVTGVIPKPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLA 308
+ ++ GVIP+ I KL D++Q + +E+++ + +SA Q+ Q + ++
Sbjct: 274 IEDIAGVIPESTINKLTTAIRPQKSGDTYQNVAGVVEEMVADGWSAGQVVSQLYQHIVYD 333
Query: 309 SSLSDKQK 316
++ D QK
Sbjct: 334 EAIPDVQK 341
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 21/145 (14%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED--------------VLEVTGVIPN 366
A++ L++ S GD+R+AIT LQS ARL G + D + ++ GVIP
Sbjct: 224 AVDALIKCSEGDLRKAITFLQSAARLVGATENADGDQSMDVDKKPITVKIIEDIAGVIPE 283
Query: 367 PWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKAL 419
I KL D++Q + +E+++ + +SA Q+ Q + ++ ++ D QK
Sbjct: 284 STINKLTTAIRPQKSGDTYQNVAGVVEEMVADGWSAGQVVSQLYQHIVYDEAIPDVQKNK 343
Query: 420 ILEKLAECNARLQDGASEYIQILDL 444
I+ +E + RL DGA E++ ILDL
Sbjct: 344 IVLIFSEVDKRLVDGADEHLSILDL 368
>gi|350296832|gb|EGZ77809.1| activator 1 41 kDa subunit [Neurospora tetrasperma FGSC 2509]
Length = 387
Score = 280 bits (717), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 149/342 (43%), Positives = 206/342 (60%), Gaps = 34/342 (9%)
Query: 9 KLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH 68
K K A +S + K + PWVEKYRPKT+ DV Q ++VL++ L ++LPH
Sbjct: 8 KARKAAAASGTPNPEKQTKETPRAQPWVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPH 67
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQ---T 124
LFYGPPGTGKTST++A +L+G ++ + R+LELNASD+RGI ++R+KVK FA+
Sbjct: 68 MLFYGPPGTGKTSTILALAKELYGPELIKARVLELNASDERGISIVREKVKDFARMQLTN 127
Query: 125 ASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPL 184
S + PCPPFK++ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL
Sbjct: 128 PSAAYKARYPCPPFKLIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPL 187
Query: 185 TSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244
SRCSKFRFK L + RL+ I + E V + A++ L++ S GD+R+AIT LQS AR
Sbjct: 188 ASRCSKFRFKSLDQGNAKKRLEEIAQLEGVGLEEGAIDALIKCSEGDLRKAITYLQSAAR 247
Query: 245 LKGGEGIVNED-----------------------VLEVTGVIPKPWIEKLLK-------V 274
L G +D V ++ GVIP I++LL+ V
Sbjct: 248 LVGAVAATAKDGEQKETEGDDEMEVDAKLVTVKVVEDIAGVIPDDTIQRLLEAMRPRAGV 307
Query: 275 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
D++ + K +E+++ + +SA Q Q + V+ + D QK
Sbjct: 308 DTYPAVAKVVEEMVADGWSAGQTMTQLYQAVVFDEMIPDVQK 349
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 30/155 (19%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-----------------------V 357
A++ L++ S GD+R+AIT LQS ARL G +D V
Sbjct: 223 AIDALIKCSEGDLRKAITYLQSAARLVGAVAATAKDGEQKETEGDDEMEVDAKLVTVKVV 282
Query: 358 LEVTGVIPNPWIEKLLK-------VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS 410
++ GVIP+ I++LL+ VD++ + K +E+++ + +SA Q Q + V+
Sbjct: 283 EDIAGVIPDDTIQRLLEAMRPRAGVDTYPAVAKVVEEMVADGWSAGQTMTQLYQAVVFDE 342
Query: 411 SLSDKQKALILEKLAECNARLQDGASEYIQILDLG 445
+ D QK I+ +E + RL DGA E++ +LDL
Sbjct: 343 MIPDVQKNKIVMVFSEVDKRLVDGADEHLSVLDLA 377
>gi|66808355|ref|XP_637900.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74853593|sp|Q54MD4.1|RFC4_DICDI RecName: Full=Probable replication factor C subunit 4; AltName:
Full=Activator 1 subunit 4
gi|60466332|gb|EAL64392.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 347
Score = 280 bits (717), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 139/293 (47%), Positives = 197/293 (67%), Gaps = 14/293 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWV KYRPKT+DDV Q++V+S LKK L+ +LPH LFYGPPGTGKTST++A ++G
Sbjct: 11 PWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMDIYGP 70
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFA----QQTASGFNQDGKPCPPFKIVILDEADS 148
++ ++R+LELNASD+RGI+V+R K+K FA +T +G P FK++ILDEADS
Sbjct: 71 ELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTG---TSNPGATFKLIILDEADS 127
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQAALRRT+E +K+TRFCL+CNY+S II PL SRC+KFRFKPL + RL++I
Sbjct: 128 MTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKFI 187
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL-EVTGVIPKPW 267
+QE + C+ + + S GDMR+AIT LQS R + ++EDV+ + G +P
Sbjct: 188 SQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANK--ISEDVIYNIAGSLPPQL 245
Query: 268 IEKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
I++L+ K +SF L+ ++ +I + Y +Q+ Q D V+ L+ QK+
Sbjct: 246 IKQLVDCCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQKS 298
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 83/140 (59%), Gaps = 9/140 (6%)
Query: 315 QKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL-EVTGVIPNPWIEKLL 373
++++++A++ + S GDMR+AIT LQS R + ++EDV+ + G +P I++L+
Sbjct: 196 EESVYQAIQVV---SNGDMRKAITYLQSAFRFFANK--ISEDVIYNIAGSLPPQLIKQLV 250
Query: 374 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 430
K +SF L+ ++ +I + Y +Q+ Q D V++ L+ QK+ I K+ +
Sbjct: 251 DCCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQKSHITMKIGNVDRN 310
Query: 431 LQDGASEYIQILDLGSIVIK 450
L DG+ E++Q+ DL S ++K
Sbjct: 311 LIDGSEEFLQLFDLSSYIMK 330
>gi|226292668|gb|EEH48088.1| replication factor C subunit 2 [Paracoccidioides brasiliensis Pb18]
Length = 395
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 149/339 (43%), Positives = 206/339 (60%), Gaps = 40/339 (11%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
S K S + TR +P WVEKYRPKT+DDV Q+ ++VL++ L ++LPH LFYGPP
Sbjct: 20 SKPKASEKEADNTRLQP--WVEKYRPKTLDDVASQEHTITVLQRTLQASNLPHMLFYGPP 77
Query: 76 GTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ---- 130
GTGKTST++A LFG +YR RILELNASD+RGI ++R+K+K FA+ S
Sbjct: 78 GTGKTSTILALSKSLFGPQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPVSDTA 137
Query: 131 --DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRC 188
+ PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II PL SRC
Sbjct: 138 YCEKYPCPPFKIIILDEADSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRC 197
Query: 189 SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL--- 245
SKFRFK L + +RL+ I E + +ETL+ S GD+RRAIT +QS ARL
Sbjct: 198 SKFRFKALDGSAAGSRLEEIARVEKLRLADGCIETLIRCSEGDLRRAITFMQSAARLVGS 257
Query: 246 --------------------KGGEGIVN-EDVLEVTGVIPKPWIEKLLKVDS-------F 277
G EG++ + E+ GV+P + +L+K +
Sbjct: 258 GLVSKPPPGKDEGGDEDMADAGDEGVITVRTIEEIAGVVPDDIVNRLVKALQPKKARLPY 317
Query: 278 QVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ + K + D++ + +SA+Q+ Q + I++ S+ D K
Sbjct: 318 EEVSKVVTDIVADGWSASQMLTQLYQIIVFDDSIEDIHK 356
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 31/155 (20%)
Query: 322 LETLVETSGGDMRRAITCLQSCARL-----------------------KGGEGIVN-EDV 357
+ETL+ S GD+RRAIT +QS ARL G EG++ +
Sbjct: 230 IETLIRCSEGDLRRAITFMQSAARLVGSGLVSKPPPGKDEGGDEDMADAGDEGVITVRTI 289
Query: 358 LEVTGVIPNPWIEKLLKVDS-------FQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS 410
E+ GV+P+ + +L+K ++ + K + D++ + +SA+Q+ Q + I++
Sbjct: 290 EEIAGVVPDDIVNRLVKALQPKKARLPYEEVSKVVTDIVADGWSASQMLTQLYQIIVFDD 349
Query: 411 SLSDKQKALILEKLAECNARLQDGASEYIQILDLG 445
S+ D K I+ +E + RL DGA E++ ILDL
Sbjct: 350 SIEDIHKNSIVMVFSEFDKRLIDGADEHLTILDLA 384
>gi|440640436|gb|ELR10355.1| hypothetical protein GMDG_04737 [Geomyces destructans 20631-21]
Length = 389
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 145/324 (44%), Positives = 203/324 (62%), Gaps = 32/324 (9%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
+GK + PWVEKYRPK++ DV Q ++VL++ L ++LPH L+YGPPGTGKTST++
Sbjct: 27 NGKDNTRLQPWVEKYRPKSLADVTAQDHTITVLQRTLQSSNLPHMLYYGPPGTGKTSTIL 86
Query: 85 AACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTAS----GFNQDGKPCPPFK 139
A L+G ++ R+LELNASD+RGI ++R KVK FA+ S G Q+ CPP+K
Sbjct: 87 ALSRSLYGPALFHSRVLELNASDERGISIVRKKVKDFARMQLSRPPGGNYQEQYLCPPYK 146
Query: 140 IVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAEN 199
I+ILDEADSMT AQ+ALRRTME +K TRFCL+CNYV+ II PL SRCSKFRFK + E
Sbjct: 147 IIILDEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIDPLASRCSKFRFKRMGEG 206
Query: 200 TMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI-----VNE 254
TRL+ I E+E V + +E L++ S GD+R+AIT LQS ARL G G V E
Sbjct: 207 QAGTRLREIAEKEKVPMEEGVVEALIKHSEGDLRKAITFLQSAARLVGAAGADGGEEVEE 266
Query: 255 DVLEV---------------TGVIPKPWIEKLLKVD-------SFQVLEKYIEDLILEAY 292
D ++V GVIP I+ L+K +++ + K + +++ + +
Sbjct: 267 DAMDVDGVQKVVTVKSIEDIAGVIPDRTIDSLVKAMQPSSSGLTYENISKVVTEMVADGW 326
Query: 293 SATQLFDQFHDIVMLASSLSDKQK 316
SA+Q+ Q + ++ S++D K
Sbjct: 327 SASQVVTQLYQTIIYNESIADIHK 350
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 80/151 (52%), Gaps = 27/151 (17%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGI-----VNEDVLEV---------------T 361
+E L++ S GD+R+AIT LQS ARL G G V ED ++V
Sbjct: 228 VEALIKHSEGDLRKAITFLQSAARLVGAAGADGGEEVEEDAMDVDGVQKVVTVKSIEDIA 287
Query: 362 GVIPNPWIEKLLKVD-------SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSD 414
GVIP+ I+ L+K +++ + K + +++ + +SA+Q+ Q + ++ S++D
Sbjct: 288 GVIPDRTIDSLVKAMQPSSSGLTYENISKVVTEMVADGWSASQVVTQLYQTIIYNESIAD 347
Query: 415 KQKALILEKLAECNARLQDGASEYIQILDLG 445
K I+ +E + RL DGA E++ ILD+
Sbjct: 348 IHKNKIVMIFSEIDKRLADGADEHLSILDMA 378
>gi|336464731|gb|EGO52971.1| activator 1 41 kDa subunit [Neurospora tetrasperma FGSC 2508]
Length = 387
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 144/317 (45%), Positives = 198/317 (62%), Gaps = 34/317 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+ DV Q ++VL++ L ++LPH LFYGPPGTGKTST++A +L+G
Sbjct: 33 PWVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGP 92
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQ---TASGFNQDGKPCPPFKIVILDEADSM 149
++ + R+LELNASD+RGI ++R+KVK FA+ S + PCPPFK++ILDEADSM
Sbjct: 93 ELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSAAYKARYPCPPFKLIILDEADSM 152
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK L + RL+ I
Sbjct: 153 TQDAQSALRRTMEMYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLEEIA 212
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-------------- 255
+ E V + A++ L++ S GD+R+AIT LQS ARL G +D
Sbjct: 213 QLEGVGLEEGAVDALIKCSEGDLRKAITYLQSAARLVGAVAATGKDGEQKETEGDDEMEV 272
Query: 256 ---------VLEVTGVIPKPWIEKLLK-------VDSFQVLEKYIEDLILEAYSATQLFD 299
V ++ GVIP I++LL+ VD++ + K +E+++ + +SA Q
Sbjct: 273 DAKLVTVKVVEDIAGVIPDDTIQRLLEAMRPRAGVDTYPAVAKVVEEMVADGWSAGQTMT 332
Query: 300 QFHDIVMLASSLSDKQK 316
Q + V+ + D QK
Sbjct: 333 QLYQAVVFDEMIPDVQK 349
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 30/155 (19%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-----------------------V 357
A++ L++ S GD+R+AIT LQS ARL G +D V
Sbjct: 223 AVDALIKCSEGDLRKAITYLQSAARLVGAVAATGKDGEQKETEGDDEMEVDAKLVTVKVV 282
Query: 358 LEVTGVIPNPWIEKLLK-------VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS 410
++ GVIP+ I++LL+ VD++ + K +E+++ + +SA Q Q + V+
Sbjct: 283 EDIAGVIPDDTIQRLLEAMRPRAGVDTYPAVAKVVEEMVADGWSAGQTMTQLYQAVVFDE 342
Query: 411 SLSDKQKALILEKLAECNARLQDGASEYIQILDLG 445
+ D QK I+ +E + RL DGA E++ +LDL
Sbjct: 343 MIPDVQKNKIVMVFSEVDKRLVDGADEHLSVLDLA 377
>gi|302308854|ref|NP_985969.2| AFR422Wp [Ashbya gossypii ATCC 10895]
gi|299790827|gb|AAS53793.2| AFR422Wp [Ashbya gossypii ATCC 10895]
Length = 349
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 140/293 (47%), Positives = 195/293 (66%), Gaps = 10/293 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRP+ +DDV Q ++VLK+ L A+LPH LFYGPPGTGKTST++A +LFG
Sbjct: 23 PWVEKYRPRKLDDVASQAHAITVLKRTLESANLPHMLFYGPPGTGKTSTILALTKELFGP 82
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG---KPCPPFKIVILDEADSM 149
+ + R+LELNASD+RGI ++R+KVK FA+ T + ++ PCPP+KI+ILDEADSM
Sbjct: 83 SLMKSRVLELNASDERGISIVREKVKNFARLTVTNPTKEDLEQYPCPPYKIIILDEADSM 142
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFKPL L RL+ I
Sbjct: 143 TADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNVNALGRLEQIA 202
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK---GGEGIVNEDVLEVTGVIPKP 266
+QE++ + ALE ++ + GD+R+AIT LQ+ A++ E I V E+ GV+P
Sbjct: 203 QQEALSYEAGALEKVLHIAEGDLRKAITLLQTAAKMTSYMAAEKITIAQVEELAGVVPDD 262
Query: 267 WIEKLL-KVDSFQVLE--KYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
I+ L+ K++S + E K++ ++ + + + Q HD + L ++K
Sbjct: 263 IIKGLVEKIESKDLTEITKFVNKVVKSGWCGSSIISQLHDYYAENNELDAEKK 315
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 73/131 (55%), Gaps = 6/131 (4%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLK---GGEGIVNEDVLEVTGVIPNPWIEKLL-KVD 376
ALE ++ + GD+R+AIT LQ+ A++ E I V E+ GV+P+ I+ L+ K++
Sbjct: 213 ALEKVLHIAEGDLRKAITLLQTAAKMTSYMAAEKITIAQVEELAGVVPDDIIKGLVEKIE 272
Query: 377 SFQVLE--KYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
S + E K++ ++ + + + Q HD + L ++K I L + ++RL +G
Sbjct: 273 SKDLTEITKFVNKVVKSGWCGSSIISQLHDYYAENNELDAEKKTKIFLLLFKTDSRLSNG 332
Query: 435 ASEYIQILDLG 445
E+IQ+LDL
Sbjct: 333 TDEHIQLLDLA 343
>gi|85118512|ref|XP_965460.1| activator 1 41 kDa subunit [Neurospora crassa OR74A]
gi|28927269|gb|EAA36224.1| activator 1 41 kDa subunit [Neurospora crassa OR74A]
Length = 387
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 144/317 (45%), Positives = 198/317 (62%), Gaps = 34/317 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+ DV Q ++VL++ L ++LPH LFYGPPGTGKTST++A +L+G
Sbjct: 33 PWVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGP 92
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQ---TASGFNQDGKPCPPFKIVILDEADSM 149
++ + R+LELNASD+RGI ++R+KVK FA+ S + PCPPFK++ILDEADSM
Sbjct: 93 ELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSAAYKARYPCPPFKLIILDEADSM 152
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK L + RL+ I
Sbjct: 153 TQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLEEIA 212
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-------------- 255
+ E V + A++ L++ S GD+R+AIT LQS ARL G +D
Sbjct: 213 QLEGVGLEEGAVDALIKCSEGDLRKAITYLQSAARLVGAVAATAKDGEQKETEGDDEMEV 272
Query: 256 ---------VLEVTGVIPKPWIEKLLK-------VDSFQVLEKYIEDLILEAYSATQLFD 299
V ++ GVIP I++LL+ VD++ + K +E+++ + +SA Q
Sbjct: 273 DAKLVTVKVVEDIAGVIPDDTIQRLLEAMRPRAGVDTYPAVAKVVEEMVADGWSAGQTMT 332
Query: 300 QFHDIVMLASSLSDKQK 316
Q + V+ + D QK
Sbjct: 333 QLYQAVVFDEMIPDVQK 349
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 30/155 (19%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-----------------------V 357
A++ L++ S GD+R+AIT LQS ARL G +D V
Sbjct: 223 AVDALIKCSEGDLRKAITYLQSAARLVGAVAATAKDGEQKETEGDDEMEVDAKLVTVKVV 282
Query: 358 LEVTGVIPNPWIEKLLK-------VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS 410
++ GVIP+ I++LL+ VD++ + K +E+++ + +SA Q Q + V+
Sbjct: 283 EDIAGVIPDDTIQRLLEAMRPRAGVDTYPAVAKVVEEMVADGWSAGQTMTQLYQAVVFDE 342
Query: 411 SLSDKQKALILEKLAECNARLQDGASEYIQILDLG 445
+ D QK I+ +E + RL DGA E++ +LDL
Sbjct: 343 MIPDVQKNKIVMVFSEVDKRLVDGADEHLSVLDLA 377
>gi|255712103|ref|XP_002552334.1| KLTH0C02442p [Lachancea thermotolerans]
gi|238933713|emb|CAR21896.1| KLTH0C02442p [Lachancea thermotolerans CBS 6340]
Length = 356
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 135/279 (48%), Positives = 189/279 (67%), Gaps = 10/279 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPK ++DV Q V+VLKK L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 25 PWVEKYRPKKLEDVTAQDHAVNVLKKTLQSANLPHMLFYGPPGTGKTSTILALTKELYGP 84
Query: 94 -MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK---PCPPFKIVILDEADSM 149
+ + R+LELNASD+RGI ++RDK+K+FA+ T S +Q+ + PCPP+KI+ILDEADSM
Sbjct: 85 ALMKSRVLELNASDERGIAIVRDKIKSFARLTVSKPSQNDREKYPCPPYKIIILDEADSM 144
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFKPL + L+R+QY+
Sbjct: 145 TADAQSALRRTMENYSNVTRFCLICNYVTRIIDPLASRCSKFRFKPLDSSNALSRVQYVA 204
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG---EGIVNEDVLEVTGVIPKP 266
++E + D LE +++ S GD+RRAI LQS +++ I V E+ G +P
Sbjct: 205 KEERLQYDEHVLEKILDVSQGDLRRAIMLLQSTSKIVKHLDPPQITALTVDELAGTVPTE 264
Query: 267 WIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFH 302
+ +L + + + ++ + ++I +S + +Q H
Sbjct: 265 LLNELVAKIATANLETIKINVREMIKSGWSGASVVNQLH 303
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 70/132 (53%), Gaps = 10/132 (7%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGG---EGIVNEDVLEVTGVIPNPWIEKL---LKV 375
LE +++ S GD+RRAI LQS +++ I V E+ G +P + +L +
Sbjct: 216 LEKILDVSQGDLRRAIMLLQSTSKIVKHLDPPQITALTVDELAGTVPTELLNELVAKIAT 275
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSD--KQKALILEKLAECNARLQD 433
+ + ++ + ++I +S + +Q H +++ S K KA L + + +++L +
Sbjct: 276 ANLETIKINVREMIKSGWSGASVVNQLHHYYINSDQYSTAFKNKASWL--IFDADSKLTN 333
Query: 434 GASEYIQILDLG 445
G++E+IQ+L+L
Sbjct: 334 GSNEHIQLLNLA 345
>gi|327292807|ref|XP_003231101.1| DNA replication factor C subunit Rfc2 [Trichophyton rubrum CBS
118892]
gi|326466731|gb|EGD92184.1| DNA replication factor C subunit Rfc2 [Trichophyton rubrum CBS
118892]
Length = 386
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 144/327 (44%), Positives = 206/327 (62%), Gaps = 32/327 (9%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTS 81
V+ + ++ + PWVEKYRPKT+DDV Q +S+L++ L+ ++LPH LFYG PGTGKTS
Sbjct: 22 VTNNQESDQQAQPWVEKYRPKTLDDVTAQDHTISILQRNLNASNLPHMLFYGSPGTGKTS 81
Query: 82 TMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFA-----QQTASGFNQDGKPC 135
T++A LFG + R R+LELNASD+RGI ++R+K+K FA Q A + PC
Sbjct: 82 TILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPADPVYRSQYPC 141
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
PPFKI+ILDEADSMTH AQ+ALRRTMEK ++ TRFCL+CNYV+ II P+ SRCSKFRFK
Sbjct: 142 PPFKIIILDEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIIDPVASRCSKFRFKV 201
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL-KGGEG---- 250
L + +RL I E + + +ETL+ S GD+R+AIT +QS ARL + G G
Sbjct: 202 LDGSAAQSRLVEIARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSSARLARYGSGKKKD 261
Query: 251 --------------IVNEDVLEVTGVIPKPWIEKLL-------KVDSFQVLEKYIEDLIL 289
I + EV+G++P+ +E+++ + ++ + + DL+
Sbjct: 262 SSDKEMELDDVKPRITVRSIEEVSGLVPETVMERVVAALRPSKRTSKYEEISSLVADLVA 321
Query: 290 EAYSATQLFDQFHDIVMLASSLSDKQK 316
+ +SA+Q+ Q + V+ S+SD QK
Sbjct: 322 DGWSASQVLSQTYQAVLQDESISDAQK 348
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 26/149 (17%)
Query: 322 LETLVETSGGDMRRAITCLQSCARL-KGGEG------------------IVNEDVLEVTG 362
+ETL+ S GD+R+AIT +QS ARL + G G I + EV+G
Sbjct: 227 VETLLRCSDGDLRKAITFMQSSARLARYGSGKKKDSSDKEMELDDVKPRITVRSIEEVSG 286
Query: 363 VIPNPWIEKLL-------KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDK 415
++P +E+++ + ++ + + DL+ + +SA+Q+ Q + V+ S+SD
Sbjct: 287 LVPETVMERVVAALRPSKRTSKYEEISSLVADLVADGWSASQVLSQTYQAVLQDESISDA 346
Query: 416 QKALILEKLAECNARLQDGASEYIQILDL 444
QK IL+ +E + RL DGA E++ LD
Sbjct: 347 QKNQILKVCSEFDKRLVDGADEHLSTLDF 375
>gi|406866228|gb|EKD19268.1| activator 1 41 kDa subunit [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 385
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 147/340 (43%), Positives = 206/340 (60%), Gaps = 32/340 (9%)
Query: 9 KLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH 68
K K+A +++ S K + PWVEKYRPK ++DV Q ++VL++ L ++LPH
Sbjct: 8 KARKEAAATNGASAKAPTKENTRLQPWVEKYRPKNLNDVTAQDHTITVLQRTLQSSNLPH 67
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG 127
LFYGPPGTGKTST++A +L+G ++ + R+LELNASD+RGI ++R+KVK FA+ S
Sbjct: 68 MLFYGPPGTGKTSTVLALAKELYGPELMKSRVLELNASDERGISIVREKVKDFARMQLSN 127
Query: 128 FNQDGK---PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPL 184
+ + PCPP+KI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL
Sbjct: 128 PSPAYRALYPCPPYKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPL 187
Query: 185 TSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244
SRCSKFRFK L R++ I E+E V + A ETL+ S GD+R+AIT LQS AR
Sbjct: 188 ASRCSKFRFKSLDVGNAKRRVEEIAEKEGVSLEDGAAETLIRCSEGDLRKAITFLQSAAR 247
Query: 245 LKGG---------------------EGIVNEDVLEVTGVIPKPWIEKLL-------KVDS 276
L G + + + V ++ GVIP I +L+ K
Sbjct: 248 LVGAVALRDDKEDKDEDSMDVDREKKAVTVKSVEDIAGVIPDATISRLVTAMQPKSKGLV 307
Query: 277 FQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
++ + K + D++ + +SATQ+ Q ++ + D QK
Sbjct: 308 YEAVSKVVTDMVADGWSATQVVTQLFQAIIYNETTPDIQK 347
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 28/153 (18%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGG---------------------EGIVNEDVLE 359
A ETL+ S GD+R+AIT LQS ARL G + + + V +
Sbjct: 223 AAETLIRCSEGDLRKAITFLQSAARLVGAVALRDDKEDKDEDSMDVDREKKAVTVKSVED 282
Query: 360 VTGVIPNPWIEKLL-------KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL 412
+ GVIP+ I +L+ K ++ + K + D++ + +SATQ+ Q ++ +
Sbjct: 283 IAGVIPDATISRLVTAMQPKSKGLVYEAVSKVVTDMVADGWSATQVVTQLFQAIIYNETT 342
Query: 413 SDKQKALILEKLAECNARLQDGASEYIQILDLG 445
D QK I +E + RL DG+ E++ +LDL
Sbjct: 343 PDIQKNKITLVFSEADKRLVDGSDEHLIVLDLA 375
>gi|119492485|ref|XP_001263608.1| DNA replication factor C subunit Rfc2, putative [Neosartorya
fischeri NRRL 181]
gi|119411768|gb|EAW21711.1| DNA replication factor C subunit Rfc2, putative [Neosartorya
fischeri NRRL 181]
Length = 420
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 146/327 (44%), Positives = 204/327 (62%), Gaps = 38/327 (11%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
+SSK + + + + PWVEKYRPKT+DDV Q VL++ L ++LPH LFYGPP
Sbjct: 20 TSSKQKPTDGKEEQTRLQPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPP 79
Query: 76 GTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQT--------AS 126
GTGKTST++A LFG +YR RILELNASD+RGI ++R+KVK FA+ +S
Sbjct: 80 GTGKTSTILALAKSLFGPALYRSRILELNASDERGIGIVREKVKGFARTQLSQPTGLDSS 139
Query: 127 GFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186
F Q PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ +I+PL S
Sbjct: 140 YFEQ--YPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRVIEPLAS 197
Query: 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246
RCSKFRFKPL + RL +I E++ D ++ L+ GD+RRAIT +QS ARL
Sbjct: 198 RCSKFRFKPLDNSAAAERLAHIARLENLKLDEGVIDKLISCGEGDLRRAITYMQSAARLV 257
Query: 247 G-----GEGIVNED---------------VLEVTGVIPKPWIEKLLKV-------DSFQV 279
G G+ +ED + E+ GV+P+ I++L++ S++
Sbjct: 258 GAGRPTGQKDGDEDSEMTDASSEPITVRMIEEIAGVVPESVIDRLVQAMQPKKLGSSYEA 317
Query: 280 LEKYIEDLILEAYSATQLFDQFHDIVM 306
+ + D++ + +SA QL Q +++
Sbjct: 318 VSVVVTDIVADGWSAGQLVLQVSSVLI 344
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 55/179 (30%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKG-----GEGIVNED---------------VLEVT 361
++ L+ GD+RRAIT +QS ARL G G+ +ED + E+
Sbjct: 232 IDKLISCGEGDLRRAITYMQSAARLVGAGRPTGQKDGDEDSEMTDASSEPITVRMIEEIA 291
Query: 362 GVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLF--------------- 399
GV+P I++L++ S++ + + D++ + +SA QL
Sbjct: 292 GVVPESVIDRLVQAMQPKKLGSSYEAVSVVVTDIVADGWSAGQLVLQVSSVLIPLKGSVQ 351
Query: 400 -------------DQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 445
Q + ++ ++ D QK I+ +E + RL DGA E++ ILDL
Sbjct: 352 LRDSILVVKDANNPQLYRRIVYNDAIPDIQKNKIVTAFSEMDKRLVDGADEHLSILDLA 410
>gi|302830262|ref|XP_002946697.1| DNA replication factor C complex subunit 4 [Volvox carteri f.
nagariensis]
gi|300267741|gb|EFJ51923.1| DNA replication factor C complex subunit 4 [Volvox carteri f.
nagariensis]
Length = 328
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 138/266 (51%), Positives = 182/266 (68%), Gaps = 7/266 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +++V Q+EVV+ L + L A+LPH LFYGPPGTGKTST +A QL+G
Sbjct: 5 PWVEKYRPKNVNEVAYQEEVVNTLTRALETANLPHLLFYGPPGTGKTSTALAIARQLYGP 64
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ + R++ELNASD+RGI V+R+KVK+FA PCPP+K++ILDEADSMT
Sbjct: 65 ELMKSRVMELNASDERGIHVVREKVKSFAAAAVGAPVPG-YPCPPYKLLILDEADSMTQD 123
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRRTME ++ TRF ICNYVS II+PL SRC+KFRFKPL M R+++ICE+E
Sbjct: 124 AQSALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQPTVMAGRIEHICERE 183
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
V ALE L SGGD+RRAIT LQS ARL GG + +L+V+G +P I L
Sbjct: 184 GVTLAPGALEALSSVSGGDLRRAITTLQSAARLGGGT-VDKATLLDVSGRVPADVITGLC 242
Query: 273 KV----DSFQVLEKYIEDLILEAYSA 294
+F L++ + ++ E ++A
Sbjct: 243 NSCKAPGAFAGLQRQVAGVVSEGFAA 268
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 71/135 (52%), Gaps = 5/135 (3%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV----D 376
ALE L SGGD+RRAIT LQS ARL GG + +L+V+G +P I L
Sbjct: 191 ALEALSSVSGGDLRRAITTLQSAARLGGGT-VDKATLLDVSGRVPADVITGLCNSCKAPG 249
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+F L++ + ++ E ++A Q+ Q ++S + A LE LA + L GA
Sbjct: 250 AFAGLQRQVAGVVSEGFAAQQVLQQLQLELLSDRGTPGLKLADALEALAAADFSLTVGAD 309
Query: 437 EYIQILDLGSIVIKA 451
E IQ+L++ V KA
Sbjct: 310 ETIQLLNVVGQVHKA 324
>gi|154324182|ref|XP_001561405.1| hypothetical protein BC1G_00490 [Botryotinia fuckeliana B05.10]
Length = 344
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 147/329 (44%), Positives = 204/329 (62%), Gaps = 29/329 (8%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M +F +A S+ + K N+ PWVEKYRPK + DV Q ++VL++
Sbjct: 1 MASFFDIKARKAEAASNGTVNAKEEAKKNNRMQPWVEKYRPKGLGDVTAQDHTITVLQRT 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
L ++LPH LFYGPPGTGKTST++A +L+G ++ + R+LELNASD+RGI ++R+KVK
Sbjct: 61 LQSSNLPHMLFYGPPGTGKTSTVLALAKELYGPELMKSRVLELNASDERGISIVREKVKD 120
Query: 120 FAQQTASGFN---QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
FA+ S + + PCPP+KI+ILDEADSMT AQ+ALRRTME ++ TRFCLICNY
Sbjct: 121 FARMQLSNPSPAYRQKYPCPPYKIIILDEADSMTQDAQSALRRTMETYSRITRFCLICNY 180
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
V+ II PL SRCSKFRFK L + + R++ I ++E V + A+E L++ S GD+R+AI
Sbjct: 181 VTRIIDPLASRCSKFRFKSLDKGNAVVRVREIADKEGVRLEEGAVEALIKCSEGDLRKAI 240
Query: 237 TCLQSCARLKG-----GEGIVNEDVLEV-------------TGVIPKPWIEKLLKVDS-- 276
T LQS ARL G GE N D ++V GVIP IEKL+K
Sbjct: 241 TYLQSAARLVGAVSQEGEERDNADKMDVDEKMVTVSSVEDIAGVIPDNTIEKLVKAMQPR 300
Query: 277 -----FQVLEKYIEDLILEAYSATQLFDQ 300
++ + K + D++ + +S TQ+ Q
Sbjct: 301 SRGVVYEAVSKVVVDMVADGWSGTQVVSQ 329
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 27/126 (21%)
Query: 303 DIVMLASSLSDKQKALFK--ALETLVETSGGDMRRAITCLQSCARLKG-----GEGIVNE 355
+ V+ ++DK+ + A+E L++ S GD+R+AIT LQS ARL G GE N
Sbjct: 204 NAVVRVREIADKEGVRLEEGAVEALIKCSEGDLRKAITYLQSAARLVGAVSQEGEERDNA 263
Query: 356 DVLEV-------------TGVIPNPWIEKLLKVDS-------FQVLEKYIEDLILEAYSA 395
D ++V GVIP+ IEKL+K ++ + K + D++ + +S
Sbjct: 264 DKMDVDEKMVTVSSVEDIAGVIPDNTIEKLVKAMQPRSRGVVYEAVSKVVVDMVADGWSG 323
Query: 396 TQLFDQ 401
TQ+ Q
Sbjct: 324 TQVVSQ 329
>gi|259486085|tpe|CBF83646.1| TPA: subunit of heteropentameric Replication factor C (RF-C)
(Eurofung) [Aspergillus nidulans FGSC A4]
Length = 387
Score = 278 bits (710), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 143/315 (45%), Positives = 199/315 (63%), Gaps = 32/315 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPKT+DDV Q VL++ L ++LPH LFYGPPGTGKTST++A LFG
Sbjct: 35 PWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGP 94
Query: 94 -MYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGK-----PCPPFKIVILDEA 146
+YR RILELNASD+RGI ++R+KVK FA+ Q + D + PCPPFKI+ILDEA
Sbjct: 95 ALYRSRILELNASDERGIGIVREKVKGFARVQLSHPTGLDAEYFEKYPCPPFKIIILDEA 154
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
DSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II+PL SRCSKFRFKPL + RL
Sbjct: 155 DSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGDRLA 214
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL------------------KGG 248
I + E + + ++ L+ S GD+RRAIT LQS ARL +G
Sbjct: 215 QIAQLEKLSLENGVVDKLISCSDGDLRRAITYLQSAARLVGAAKAAKDGDEDEEMKDQGS 274
Query: 249 EGIVNEDVLEVTGVIPKPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQF 301
+ I + E+ GV+P+ ++ L++ ++ + K + +++ + +SATQ+ Q
Sbjct: 275 DMITVSTIEEIAGVVPESVLDGLIQSLQPKRMGSPYEAVSKVVTEIVADGWSATQILLQL 334
Query: 302 HDIVMLASSLSDKQK 316
+ ++ ++ D QK
Sbjct: 335 YRRMVYNDAIPDIQK 349
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 76/149 (51%), Gaps = 25/149 (16%)
Query: 322 LETLVETSGGDMRRAITCLQSCARL------------------KGGEGIVNEDVLEVTGV 363
++ L+ S GD+RRAIT LQS ARL +G + I + E+ GV
Sbjct: 229 VDKLISCSDGDLRRAITYLQSAARLVGAAKAAKDGDEDEEMKDQGSDMITVSTIEEIAGV 288
Query: 364 IPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQ 416
+P ++ L++ ++ + K + +++ + +SATQ+ Q + ++ ++ D Q
Sbjct: 289 VPESVLDGLIQSLQPKRMGSPYEAVSKVVTEIVADGWSATQILLQLYRRMVYNDAIPDIQ 348
Query: 417 KALILEKLAECNARLQDGASEYIQILDLG 445
K I+ +E + RL DGA E++ ILD+
Sbjct: 349 KNKIVLVFSEMDKRLVDGADEHLSILDVA 377
>gi|398402105|ref|XP_003853207.1| replication factor C subunit 2 [Zymoseptoria tritici IPO323]
gi|339473089|gb|EGP88183.1| hypothetical protein MYCGRDRAFT_100072 [Zymoseptoria tritici
IPO323]
Length = 408
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 165/383 (43%), Positives = 223/383 (58%), Gaps = 67/383 (17%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N+ PWVEKYRPK++DDV Q V+VL++ L A+LPH LFYGPPGTGKTST++A Q
Sbjct: 29 NRQQPWVEKYRPKSLDDVTAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQ 88
Query: 90 LFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP----------CPPF 138
L+G ++ + R+LELNASD+RGI ++R+KVK FA+ S N P CPP+
Sbjct: 89 LYGPELIKTRVLELNASDERGISIVREKVKNFARMQLS--NPPSGPAGEEYRKKYSCPPY 146
Query: 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAE 198
KI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK L E
Sbjct: 147 KIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDE 206
Query: 199 NTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG---------- 248
R++ I E+V + +ETL+ S GD+R+AIT LQS ARL G
Sbjct: 207 GNAGKRIEDIARLEAVTLEDGVVETLLRCSEGDLRKAITFLQSAARLVGAIQGPPTTTKR 266
Query: 249 --EGIVNED-----------------------VLEVTGVIPKPWIEKLL---------KV 274
+ V +D + E+ GVIP P I++L+ +
Sbjct: 267 KRKTAVEDDEEDGDAMDIDTSSTTSPPITVAIISEIAGVIPDPTIDRLVASLTPKSSSQP 326
Query: 275 DSFQVLEKYIEDLILEAYSATQLFDQFHD-IVMLASSLSDKQK----ALF-KALETLVET 328
+ + + +EDL+ E +SA Q+ Q +D IV+ ++ D+ K A+F +A + LV+
Sbjct: 327 APYAPIAQAVEDLVAEGWSAGQIVSQLYDKIVIWNETVGDRAKGKIMAVFSEADKRLVD- 385
Query: 329 SGGDMRRAITCLQSCARLKGGEG 351
G D +T L C R+ G G
Sbjct: 386 -GSD--EHLTVLDLCLRVAGELG 405
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 45/168 (26%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGG------------EGIVNED------------- 356
+ETL+ S GD+R+AIT LQS ARL G + V +D
Sbjct: 229 VETLLRCSEGDLRKAITFLQSAARLVGAIQGPPTTTKRKRKTAVEDDEEDGDAMDIDTSS 288
Query: 357 ----------VLEVTGVIPNPWIEKLL---------KVDSFQVLEKYIEDLILEAYSATQ 397
+ E+ GVIP+P I++L+ + + + + +EDL+ E +SA Q
Sbjct: 289 TTSPPITVAIISEIAGVIPDPTIDRLVASLTPKSSSQPAPYAPIAQAVEDLVAEGWSAGQ 348
Query: 398 LFDQFHD-IVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 444
+ Q +D IV+ ++ D+ K I+ +E + RL DG+ E++ +LDL
Sbjct: 349 IVSQLYDKIVIWNETVGDRAKGKIMAVFSEADKRLVDGSDEHLTVLDL 396
>gi|255088619|ref|XP_002506232.1| predicted protein [Micromonas sp. RCC299]
gi|226521503|gb|ACO67490.1| predicted protein [Micromonas sp. RCC299]
Length = 329
Score = 277 bits (709), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 138/288 (47%), Positives = 187/288 (64%), Gaps = 5/288 (1%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRP+ I+DV Q+EVV L+K L A++PH LFYGPPGTGKT+ +A C QL+G
Sbjct: 7 PWVEKYRPRNINDVAHQEEVVRTLEKALETANMPHMLFYGPPGTGKTTCALAICRQLYGP 66
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ + R+LELNASD+RGI V+R+K+K FA TA G G P PP+KI+ILDEADSMT+
Sbjct: 67 ELIKSRVLELNASDERGISVVRNKIKGFAS-TAVGQGAPGYPSPPYKILILDEADSMTND 125
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRRTME +K TRF ++CNY+S II+P+ SRC+KFRFKPL M RL++I E
Sbjct: 126 AQSALRRTMETYSKVTRFFILCNYISRIIEPIASRCAKFRFKPLGHEVMGDRLKFIATAE 185
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEK-- 270
+ E SGGDMR+AIT LQS ARL G I +++ V G + + + +
Sbjct: 186 GLTLGEGCYEACSTHSGGDMRKAITLLQSAARLFGTATITGKEITAVAGAVDEDQVAQVV 245
Query: 271 -LLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
L K + + IE ++ + + Q+ QF + V+ +SD K
Sbjct: 246 ALCKTNQVDGANRIIESILKDGFPGLQIITQFAERVVDDEGVSDAVKG 293
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 3/128 (2%)
Query: 329 SGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK---LLKVDSFQVLEKYI 385
SGGDMR+AIT LQS ARL G I +++ V G + + + L K + + I
Sbjct: 201 SGGDMRKAITLLQSAARLFGTATITGKEITAVAGAVDEDQVAQVVALCKTNQVDGANRII 260
Query: 386 EDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 445
E ++ + + Q+ QF + V+ +SD K I ++AE + L DGA E +Q++ +
Sbjct: 261 ESILKDGFPGLQIITQFAERVVDDEGVSDAVKGKICARIAEADKALVDGADESLQLMAIV 320
Query: 446 SIVIKANK 453
S A K
Sbjct: 321 STACVAMK 328
>gi|453082922|gb|EMF10969.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 406
Score = 277 bits (709), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 159/376 (42%), Positives = 216/376 (57%), Gaps = 58/376 (15%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
K N+ PWVEKYRP+++DD+ Q V+VL++ L A+LPH LFYGPPGTGKTST++A
Sbjct: 29 KDDNRLQPWVEKYRPRSLDDIAAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLAL 88
Query: 87 CHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK-----PCPPFKI 140
QL+G ++ + R+LELNASD+RGI ++R+KVK FA+ S + PCPP+KI
Sbjct: 89 AKQLYGPELVKSRVLELNASDERGISIVREKVKDFARMQLSNPPHAEEYRKKYPCPPYKI 148
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
+ILDEADSMT AQ+ALRRTME +K TRFCL+CNYV+ II PL SRCSKFRFK L E
Sbjct: 149 IILDEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIDPLASRCSKFRFKSLDEGN 208
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED----- 255
R++ I E+V D +ETL+ S GD+R+AIT LQS ARL G D
Sbjct: 209 AGKRIEDIARLENVKLDEGVVETLLRCSEGDLRKAITFLQSAARLVGATSTAATDTKVGK 268
Query: 256 -----------------------------VLEVTGVIPKPWIEKLLK--------VDSFQ 278
+ E+ GVIP I++L+ +
Sbjct: 269 RKRKTVEEDEEEDAMDVDAAPAQPVTVASIEEIAGVIPHSTIDRLITAVTPTGRGTPPYG 328
Query: 279 VLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSD---KQKALFKALET---LVETSGGD 332
+ K +EDL+ E +SA+Q+ Q ++ V+L + ++ K K + ET LV+ G D
Sbjct: 329 PIAKAVEDLVAEGWSASQVVTQLYERVVLTNEVTGDAAKNKIMLVFSETDKRLVD--GSD 386
Query: 333 MRRAITCLQSCARLKG 348
+T L C R+ G
Sbjct: 387 --EHLTVLDLCLRIAG 400
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 43/166 (25%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNED------------------------- 356
+ETL+ S GD+R+AIT LQS ARL G D
Sbjct: 229 VETLLRCSEGDLRKAITFLQSAARLVGATSTAATDTKVGKRKRKTVEEDEEEDAMDVDAA 288
Query: 357 ---------VLEVTGVIPNPWIEKLLK--------VDSFQVLEKYIEDLILEAYSATQLF 399
+ E+ GVIP+ I++L+ + + K +EDL+ E +SA+Q+
Sbjct: 289 PAQPVTVASIEEIAGVIPHSTIDRLITAVTPTGRGTPPYGPIAKAVEDLVAEGWSASQVV 348
Query: 400 DQFHD-IVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 444
Q ++ +V++ D K I+ +E + RL DG+ E++ +LDL
Sbjct: 349 TQLYERVVLTNEVTGDAAKNKIMLVFSETDKRLVDGSDEHLTVLDL 394
>gi|444315800|ref|XP_004178557.1| hypothetical protein TBLA_0B01950 [Tetrapisispora blattae CBS 6284]
gi|387511597|emb|CCH59038.1| hypothetical protein TBLA_0B01950 [Tetrapisispora blattae CBS 6284]
Length = 350
Score = 277 bits (708), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 150/337 (44%), Positives = 209/337 (62%), Gaps = 23/337 (6%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N PWVEKYRPK++DDV Q VSVLKK L ++LPH LFYGPPGTGKTST++A +
Sbjct: 16 NNTQPWVEKYRPKSLDDVYSQDHTVSVLKKNLQTSNLPHMLFYGPPGTGKTSTILAMTKE 75
Query: 90 LFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG---KPCPPFKIVILDE 145
L+G ++ RILELNASD+RGI ++R K+K FA+ S ++D PCPP+KI+ILDE
Sbjct: 76 LYGPNLINSRILELNASDERGINIVRKKIKNFAKLIISKPSKDDLEKYPCPPYKIIILDE 135
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
ADSMT AQ+ALRRTMEK + TRFCLICNYV+ II PL SRC+KFRFK L + + RL
Sbjct: 136 ADSMTSDAQSALRRTMEKYSNITRFCLICNYVTRIIDPLASRCTKFRFKSLNNDNAIERL 195
Query: 206 QYICEQES-------VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE 258
++I + E+ + DF + L++ + GD+RR+IT LQS + I + + E
Sbjct: 196 KFISKNENLNVENDEINNDF--YKNLLQIANGDLRRSITLLQSASNFSLDGPITSARIDE 253
Query: 259 VTGVIPKPWIEKLLKVDSFQVLEKYIE----DLILEAYSATQLFDQFHDIVMLASSLSDK 314
+ G++P I L+ S + L + IE +++ YSA+ + Q HD ++ S+ K
Sbjct: 254 LAGIVPDVVITNLVDKISNKNLNEIIEFTNNNIVKLGYSASAVILQLHDYYIINSNSDTK 313
Query: 315 QKA-----LFKALETLVETSGGDMRRAITCLQSCARL 346
K LF L S ++ + IT L + ++L
Sbjct: 314 FKNNVSYLLFDIDSKLTNGSNENI-QLITLLLNISQL 349
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 69/126 (54%), Gaps = 4/126 (3%)
Query: 323 ETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLE 382
+ L++ + GD+RR+IT LQS + I + + E+ G++P+ I L+ S + L
Sbjct: 217 KNLLQIANGDLRRSITLLQSASNFSLDGPITSARIDELAGIVPDVVITNLVDKISNKNLN 276
Query: 383 KYIE----DLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
+ IE +++ YSA+ + Q HD + S+ K K + L + +++L +G++E
Sbjct: 277 EIIEFTNNNIVKLGYSASAVILQLHDYYIINSNSDTKFKNNVSYLLFDIDSKLTNGSNEN 336
Query: 439 IQILDL 444
IQ++ L
Sbjct: 337 IQLITL 342
>gi|238576141|ref|XP_002387929.1| hypothetical protein MPER_13118 [Moniliophthora perniciosa FA553]
gi|215448797|gb|EEB88859.1| hypothetical protein MPER_13118 [Moniliophthora perniciosa FA553]
Length = 360
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 144/315 (45%), Positives = 193/315 (61%), Gaps = 33/315 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVE +RPKTIDDV QQ V+VL+K L+ +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 12 PWVETHRPKTIDDVSAQQHTVAVLQKALTSTNLPHMLFYGPPGTGKTSTILALARQLFGP 71
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT--ASGFNQDGK--PCPPFKIVILDEADS 148
D +R R+LELNASD+RGI ++R+K+K FA+QT A + DGK PCPP+KI+ILDEADS
Sbjct: 72 DNFRSRVLELNASDERGISIVREKIKNFARQTPRAKTVSSDGKEYPCPPYKIIILDEADS 131
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRL 205
MT AQ ALRR ME + TRFCL+CNYV+ Q ++ C +FRF PL + + RL
Sbjct: 132 MTQDAQGALRRIMETYARITRFCLVCNYVTR--QNHSTSCFAMLQFRFTPLDQTSSFNRL 189
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTG 261
I E + D + + +L+ S GD+RRAIT LQ+ RL I+ D+ E+ G
Sbjct: 190 SQIAAAEHISIDDEVVNSLIVNSSGDLRRAITYLQTAHRLSASTDPPTPIIPRDIQEIAG 249
Query: 262 VIPKPWIEKLLKV-------------------DSFQVLEKYIEDLILEAYSATQLFDQFH 302
V+P I L+V +F + + ++ E YSATQ+ Q H
Sbjct: 250 VVPDAVINDFLRVLGIDVPESMEVDTTSQTKGANFDAIRNKVREICREGYSATQVLSQVH 309
Query: 303 DIVMLASSLSDKQKA 317
D+V+L +L + K+
Sbjct: 310 DVVVLHPTLQAQHKS 324
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 23/147 (15%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTGVIPNPWIEKLLKV 375
+ + +L+ S GD+RRAIT LQ+ RL I+ D+ E+ GV+P+ I L+V
Sbjct: 203 EVVNSLIVNSSGDLRRAITYLQTAHRLSASTDPPTPIIPRDIQEIAGVVPDAVINDFLRV 262
Query: 376 -------------------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQ 416
+F + + ++ E YSATQ+ Q HD+V+ +L +
Sbjct: 263 LGIDVPESMEVDTTSQTKGANFDAIRNKVREICREGYSATQVLSQVHDVVVLHPTLQAQH 322
Query: 417 KALILEKLAECNARLQDGASEYIQILD 443
K+ AE + L DGA E + IL+
Sbjct: 323 KSQCALIFAEADKALCDGADEELWILE 349
>gi|389631703|ref|XP_003713504.1| replication factor C subunit 2 [Magnaporthe oryzae 70-15]
gi|351645837|gb|EHA53697.1| replication factor C subunit 2 [Magnaporthe oryzae 70-15]
Length = 384
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 152/338 (44%), Positives = 209/338 (61%), Gaps = 41/338 (12%)
Query: 7 TGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADL 66
T K K P +++T PWVEKYRPKT+ DV Q V+VL++ L ++L
Sbjct: 20 TAKQEKQNPENTRTQ------------PWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNL 67
Query: 67 PHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ--- 122
PH LFYGPPGTGKTST++A +LFG ++ + R+LELNASD+RGI ++R+KVK FA+
Sbjct: 68 PHMLFYGPPGTGKTSTVLALAKELFGPELMKSRVLELNASDERGISIVREKVKDFARMQL 127
Query: 123 -QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCII 181
G+ + PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II
Sbjct: 128 TNPPPGY-KSKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRII 186
Query: 182 QPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
PL SRCSKFRFK L + +RL+ I +E V + A++ L++ S GD+R+AIT LQS
Sbjct: 187 DPLASRCSKFRFKSLDQENARSRLEDIAAKEGVALEDGAVDALIKCSEGDLRKAITFLQS 246
Query: 242 CARL---KGGEGIVNEDVLEV-------------TGVIPKPWIEKLLKVD-------SFQ 278
ARL G G ED ++V GVIP I+ L++ ++Q
Sbjct: 247 AARLVGAVGAAGAGQEDKMDVDSRPVTVRIIEDIAGVIPGKTIDALVEAIRPRGAALTYQ 306
Query: 279 VLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ K +ED++ + +SATQ+ Q + ++ + + QK
Sbjct: 307 AVSKVVEDMVADGWSATQVVGQLYQAIVYDEGIPNIQK 344
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 23/147 (15%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIV---NEDVLEV-------------TGVI 364
A++ L++ S GD+R+AIT LQS ARL G G ED ++V GVI
Sbjct: 225 AVDALIKCSEGDLRKAITFLQSAARLVGAVGAAGAGQEDKMDVDSRPVTVRIIEDIAGVI 284
Query: 365 PNPWIEKLLKVD-------SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQK 417
P I+ L++ ++Q + K +ED++ + +SATQ+ Q + ++ + + QK
Sbjct: 285 PGKTIDALVEAIRPRGAALTYQAVSKVVEDMVADGWSATQVVGQLYQAIVYDEGIPNIQK 344
Query: 418 ALILEKLAECNARLQDGASEYIQILDL 444
I+ +E + RL DG+ E++ ILDL
Sbjct: 345 NEIVMVFSEVDKRLVDGSDEHLSILDL 371
>gi|312075109|ref|XP_003140271.1| replication factor C [Loa loa]
gi|307764567|gb|EFO23801.1| replication factor C [Loa loa]
Length = 308
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 138/289 (47%), Positives = 194/289 (67%), Gaps = 7/289 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF- 91
+PWVEKYRP+ +++V Q EVVSVLKK L GADLP+ LFYGPPGTGKTS IA C QLF
Sbjct: 21 IPWVEKYRPRKVEEVAFQNEVVSVLKKVLEGADLPNLLFYGPPGTGKTSAAIALCRQLFR 80
Query: 92 -GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+ Y +R++E+NASD+RGI ++R+K+K FA++ S DG P K++ILDEAD+MT
Sbjct: 81 NTETYHDRVMEMNASDERGINIVRNKIKEFARRAVSSHLPDGSPVVGLKVIILDEADAMT 140
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQAALRRTMEKE+++TRF LICNY++ II PLTSRC+KFRFK ++ + RL++IC+
Sbjct: 141 TPAQAALRRTMEKESRTTRFFLICNYITRIIDPLTSRCAKFRFKSISSESQGKRLEWICQ 200
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEK 270
E++ D A++ L+E GDMR+++T LQ+ + + ++ DV + G IP +E+
Sbjct: 201 NENIEFDPLAIDELIELCDGDMRKSVTALQTISSCH--KKLLPSDVRQFLGAIPDDVVER 258
Query: 271 LL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
L + + L +E + E Y QL QF I + L+D +K
Sbjct: 259 FLTACRSCNHDQLYACVESIRREGYGVYQLLKQFFYICLHLEDLTDLKK 307
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDS 377
A++ L+E GDMR+++T LQ+ + + ++ DV + G IP+ +E+ L + +
Sbjct: 210 AIDELIELCDGDMRKSVTALQTISSCH--KKLLPSDVRQFLGAIPDDVVERFLTACRSCN 267
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQK 417
L +E + E Y QL QF I + L+D +K
Sbjct: 268 HDQLYACVESIRREGYGVYQLLKQFFYICLHLEDLTDLKK 307
>gi|385304250|gb|EIF48275.1| activator 1 41 kda subunit [Dekkera bruxellensis AWRI1499]
Length = 380
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 148/317 (46%), Positives = 202/317 (63%), Gaps = 32/317 (10%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +D+V Q+ V +LKK L A+LPH LFYGPPGTGKTST++A QL+G
Sbjct: 21 MPWVEKYRPKNLDEVSSQKTTVQILKKNLETANLPHMLFYGPPGTGKTSTILAMAKQLYG 80
Query: 93 D-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK---PCPPFKIVILDEADS 148
+++ R+LELNASD+RGI ++R+++K FA+ T S Q+ K PCPP+K++ILDEADS
Sbjct: 81 PRLFKTRVLELNASDERGISIVRERIKGFARLTVSRPXQEDKANYPCPPYKMIILDEADS 140
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L E + LTRL+YI
Sbjct: 141 MTGDAQSALRRTMETYSGITRFCLICNYVTRIIDPLASRCSKFRFKSLDEGSALTRLEYI 200
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL----------KGGEGIV------ 252
C +ES+ D L+ ++ S GD+RRAI LQS +RL K + V
Sbjct: 201 CGKESIDVDTNILKEILRISEGDLRRAINYLQSVSRLLSTDSDEHSAKDADNDVEMLDAG 260
Query: 253 -------NEDVLEVTGVIP----KPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQF 301
E V E+ G +P ++ L K + ++ E + + E Y+ + L +
Sbjct: 261 PDSRQSKREQVREMFGFMPLGTLSEFVGLLEKKNLNKIFEFIFDKISKEGYNGSILIESL 320
Query: 302 HDIVMLASSLSDKQKAL 318
HD ++L S+ SD++ L
Sbjct: 321 HDKLLLGST-SDEETDL 336
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 37/159 (23%)
Query: 322 LETLVETSGGDMRRAITCLQSCARL----------KGGEGIV-------------NEDVL 358
L+ ++ S GD+RRAI LQS +RL K + V E V
Sbjct: 213 LKEILRISEGDLRRAINYLQSVSRLLSTDSDEHSAKDADNDVEMLDAGPDSRQSKREQVR 272
Query: 359 EVTGVIP----NPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASS--- 411
E+ G +P + ++ L K + ++ E + + E Y+ + L + HD ++ S+
Sbjct: 273 EMFGFMPLGTLSEFVGLLEKKNLNKIFEFIFDKISKEGYNGSILIESLHDKLLLGSTSDE 332
Query: 412 -------LSDKQKALILEKLAECNARLQDGASEYIQILD 443
LS+ QK I + L + + RL +G E IQIL+
Sbjct: 333 ETDLSLRLSNNQKNAISKVLFDTDCRLTEGCDEGIQILN 371
>gi|241957153|ref|XP_002421296.1| replication factor C subunit, putative [Candida dubliniensis CD36]
gi|223644640|emb|CAX40630.1| replication factor C subunit, putative [Candida dubliniensis CD36]
Length = 364
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 143/300 (47%), Positives = 198/300 (66%), Gaps = 21/300 (7%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK++ DV Q+ + VL + + +LPH LFYGPPGTGKTST++A +L+G
Sbjct: 26 PWVEKYRPKSLSDVSSQEHTIKVLTQTIKSGNLPHMLFYGPPGTGKTSTILALAKELYGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD---GKPCPPFKIVILDEADSM 149
++Y+ R+LELNASD+RGI ++R+K+K FA+ T S ++ PCPP+KI+ILDEADSM
Sbjct: 86 NLYKSRVLELNASDERGISIVREKIKNFARLTISNPTKEDLANYPCPPYKIIILDEADSM 145
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+ AQ+ALRRTME TRF LICNY++ II P+TSRCSKFRFK L RL+YI
Sbjct: 146 TYDAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCSKFRFKLLNNENAQLRLKYIG 205
Query: 210 EQESVMCDF----KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL-------E 258
+QE++ D + ++ L++ SGGD+R+AIT LQS A+L I + L E
Sbjct: 206 QQENLRFDKGQEDQVIQELLKISGGDLRKAITYLQSAAKLSETFDINDHQSLITIQSIRE 265
Query: 259 VTGVIPKPWIE---KLLKVDSFQV--LEKYI-EDLILEAYSATQLFDQFHDIVMLASSLS 312
G++P + +L+K S Q L KYI + +IL +SA L DQ HD ++L S++
Sbjct: 266 TAGILPDDILLELIQLMKQKSIQQTKLIKYIDQSIILSGWSAQILLDQLHDKLILDESIN 325
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 76/138 (55%), Gaps = 13/138 (9%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL-------EVTGVIPNPWIE-- 370
+ ++ L++ SGGD+R+AIT LQS A+L I + L E G++P+ +
Sbjct: 219 QVIQELLKISGGDLRKAITYLQSAAKLSETFDINDHQSLITIQSIRETAGILPDDILLEL 278
Query: 371 -KLLKVDSFQV--LEKYI-EDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 426
+L+K S Q L KYI + +IL +SA L DQ HD ++ S++ K I + +
Sbjct: 279 IQLMKQKSIQQTKLIKYIDQSIILSGWSAQILLDQLHDKLILDESINSLSKNKISQIFFQ 338
Query: 427 CNARLQDGASEYIQILDL 444
+ +L +G E+IQ+L++
Sbjct: 339 SDRKLNNGTDEHIQLLNV 356
>gi|326482375|gb|EGE06385.1| DNA replication factor C subunit Rfc2 [Trichophyton equinum CBS
127.97]
Length = 386
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 143/327 (43%), Positives = 205/327 (62%), Gaps = 32/327 (9%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTS 81
V+ + ++ + PWVEKYRPKT+DDV Q +SVL++ L ++LPH LFYG PGTGKTS
Sbjct: 22 VTNNQESDQQAQPWVEKYRPKTLDDVTAQDHTISVLQRNLHASNLPHMLFYGSPGTGKTS 81
Query: 82 TMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK-----PC 135
T++A LFG + R R+LELNASD+RGI ++R+K+K FA+ S D PC
Sbjct: 82 TILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPTDPAYRSQYPC 141
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
PPFKI+ILDEADSMTH AQ+ALRRTMEK ++ TRFCL+CNYV+ II P+ SRCSKFRFK
Sbjct: 142 PPFKIIILDEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIIDPVASRCSKFRFKV 201
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL-KGGEG---- 250
L + +RL I E + + +ETL+ S GD+R+AIT +QS ARL + G G
Sbjct: 202 LDGSAAQSRLIEIARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSSARLARYGSGKKKD 261
Query: 251 --------------IVNEDVLEVTGVIPKPWIEKLL-------KVDSFQVLEKYIEDLIL 289
I + EV+G++P+ +++++ + ++ + + DL+
Sbjct: 262 SSDKEMELDDVKPTITVRSIEEVSGLVPETVMQRVVAALRPSKRASKYEEISSLVADLVA 321
Query: 290 EAYSATQLFDQFHDIVMLASSLSDKQK 316
+ +SA+Q+ Q + V+ S++D QK
Sbjct: 322 DGWSASQVLSQTYQAVLQDESIADVQK 348
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 78/149 (52%), Gaps = 26/149 (17%)
Query: 322 LETLVETSGGDMRRAITCLQSCARL-KGGEG------------------IVNEDVLEVTG 362
+ETL+ S GD+R+AIT +QS ARL + G G I + EV+G
Sbjct: 227 VETLLRCSDGDLRKAITFMQSSARLARYGSGKKKDSSDKEMELDDVKPTITVRSIEEVSG 286
Query: 363 VIPNPWIEKLL-------KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDK 415
++P +++++ + ++ + + DL+ + +SA+Q+ Q + V+ S++D
Sbjct: 287 LVPETVMQRVVAALRPSKRASKYEEISSLVADLVADGWSASQVLSQTYQAVLQDESIADV 346
Query: 416 QKALILEKLAECNARLQDGASEYIQILDL 444
QK IL+ +E + RL DGA E++ LD
Sbjct: 347 QKNQILKVCSEFDKRLVDGADEHLSTLDF 375
>gi|68471103|ref|XP_720328.1| hypothetical protein CaO19.7035 [Candida albicans SC5314]
gi|77022536|ref|XP_888712.1| hypothetical protein CaO19_7035 [Candida albicans SC5314]
gi|46442191|gb|EAL01482.1| hypothetical protein CaO19.7035 [Candida albicans SC5314]
gi|76573525|dbj|BAE44609.1| hypothetical protein [Candida albicans]
gi|238883252|gb|EEQ46890.1| activator 1 41 kDa subunit [Candida albicans WO-1]
Length = 363
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 139/301 (46%), Positives = 198/301 (65%), Gaps = 21/301 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
PWVEKYRPK+++DV Q+ + VL + + +LPH LFYGPPGTGKTST++A +L+G
Sbjct: 24 TPWVEKYRPKSLNDVSSQEHTIKVLTQTIKSGNLPHMLFYGPPGTGKTSTILALAKELYG 83
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD---GKPCPPFKIVILDEADS 148
++Y+ R+LELNASD+RGI ++R+K+K FA+ T S ++ PCPP+KI+ILDEADS
Sbjct: 84 PNLYKSRVLELNASDERGISIVREKIKNFARLTISNPTKEDLQNYPCPPYKIIILDEADS 143
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT+ AQ+ALRRTME TRF LICNY++ II P+TSRCSKFRFK L RL+YI
Sbjct: 144 MTNDAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCSKFRFKLLNNENAQLRLKYI 203
Query: 209 CEQESVM-----CDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL------ 257
+QE++ + + ++ L++ SGGD+R+AIT LQS A+L I + L
Sbjct: 204 GQQENLRFESENNEHQVIQELLKISGGDLRKAITYLQSAAKLSETFDINHHQSLITIQSI 263
Query: 258 -EVTGVIPKPWIEKLLKVDSFQV----LEKYI-EDLILEAYSATQLFDQFHDIVMLASSL 311
E G++P + +L++ + L KYI + +IL +SA L DQ HD ++L S+
Sbjct: 264 RETAGILPDDILAELIQFIKSKTQQSRLIKYIDQSIILSGWSAQILLDQLHDKLILDESI 323
Query: 312 S 312
+
Sbjct: 324 N 324
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 75/137 (54%), Gaps = 12/137 (8%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL-------EVTGVIPNPWIEKL 372
+ ++ L++ SGGD+R+AIT LQS A+L I + L E G++P+ + +L
Sbjct: 219 QVIQELLKISGGDLRKAITYLQSAAKLSETFDINHHQSLITIQSIRETAGILPDDILAEL 278
Query: 373 LKVDSFQV----LEKYI-EDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 427
++ + L KYI + +IL +SA L DQ HD ++ S++ K I + +
Sbjct: 279 IQFIKSKTQQSRLIKYIDQSIILSGWSAQILLDQLHDKLILDESINSLSKNKISQIFFQS 338
Query: 428 NARLQDGASEYIQILDL 444
+ +L +G E+IQ+L++
Sbjct: 339 DRKLNNGTDEHIQLLNV 355
>gi|149234968|ref|XP_001523363.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146453152|gb|EDK47408.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 402
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 143/319 (44%), Positives = 189/319 (59%), Gaps = 49/319 (15%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +DDV Q V VLKK +S +LPH LFYGPPGTGKTST++A QL+G
Sbjct: 36 PWVEKYRPKNLDDVASQDHAVKVLKKQISTGNLPHMLFYGPPGTGKTSTILALAKQLYGP 95
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD---GKPCPPFKIVILDEADSM 149
++Y+ R+LELNASD+RGI ++R K+K FA+ T S +D PCPP+KI+ILDEADSM
Sbjct: 96 NLYKSRVLELNASDERGISIVRQKIKNFAKLTVSNPTEDDLRNYPCPPYKIIILDEADSM 155
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+ AQ+ALRRTME TRF L+CNY++ II PL SRCSKFRFK L L RL+YI
Sbjct: 156 TNDAQSALRRTMETYANITRFALVCNYITRIIDPLASRCSKFRFKLLNNENSLNRLKYIA 215
Query: 210 EQESVMCDFKA-----LETLVETSGGDMRRAITCLQSCARLKGG------EGIVNED--- 255
++E++ D K L ++ S GDMR+AIT LQS ++L + +NED
Sbjct: 216 KEENLHLDEKGAPDEVLNEVLRISNGDMRKAITYLQSASKLSSSLQLENCKNDMNEDNKG 275
Query: 256 ----------------------------VLEVTGVIPKPWIEKL---LKVDSFQVLEKYI 284
+ E G++P I ++ +K + +L +
Sbjct: 276 ESTPSSRKGDEKDDEEEEKDKGLITKASIRETAGILPDTLILQMVESIKQKNEGILINLV 335
Query: 285 EDLILEAYSATQLFDQFHD 303
D+I +S QL DQ HD
Sbjct: 336 NDIISSGWSVQQLIDQLHD 354
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 40/172 (23%)
Query: 313 DKQKALFKALETLVETSGGDMRRAITCLQSCARLKGG------EGIVNED---------- 356
D++ A + L ++ S GDMR+AIT LQS ++L + +NED
Sbjct: 223 DEKGAPDEVLNEVLRISNGDMRKAITYLQSASKLSSSLQLENCKNDMNEDNKGESTPSSR 282
Query: 357 ---------------------VLEVTGVIPNPWIEKL---LKVDSFQVLEKYIEDLILEA 392
+ E G++P+ I ++ +K + +L + D+I
Sbjct: 283 KGDEKDDEEEEKDKGLITKASIRETAGILPDTLILQMVESIKQKNEGILINLVNDIISSG 342
Query: 393 YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 444
+S QL DQ HD ++ ++ +K I L + + +L G E+IQ+L+L
Sbjct: 343 WSVQQLIDQLHDQLVWDDTIDSLKKNQIALTLFDTDKKLNLGTDEHIQLLNL 394
>gi|428170599|gb|EKX39523.1| replication factor C, subunit RFC4 [Guillardia theta CCMP2712]
Length = 324
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 148/319 (46%), Positives = 201/319 (63%), Gaps = 14/319 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPWVE++RP +I V Q+ VV+ L + +LPH LFYGPPGTGKTST++A L+G
Sbjct: 2 VPWVEQHRPSSIAQVAHQRHVVATLSSAVESGNLPHLLFYGPPGTGKTSTILALAKDLYG 61
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y+ R+LELNASD+RGI V+R+K+K FA S PCPPFK+VILDEAD MT
Sbjct: 62 PELYKSRVLELNASDERGIDVVRNKIKHFASLAVSSSKSSSYPCPPFKLVILDEADCMTT 121
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ+ALRRTME T+ TRFC+ICNYVS II P+ SRC+KFRF+P++ ML RL I ++
Sbjct: 122 DAQSALRRTMETCTRVTRFCIICNYVSRIISPIASRCAKFRFQPVSTEVMLERLNMIADK 181
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL 271
E + LV SGGD+RRAIT +Q+ L G + +D++E IP I L
Sbjct: 182 EGFQLPSDVTDALVNISGGDLRRAITMMQNTYILH-GNSMKGQDIIENAATIPDSVILDL 240
Query: 272 L---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVML--ASSLSDKQKALF-KALET- 324
+ K +SF+ ++ + D+I + Y A +Q HD VM A +S K K++ KAL T
Sbjct: 241 VNSCKYNSFEKIQSKVNDIIADGYPA----NQIHDWVMSKEAFGISAKSKSIICKALGTT 296
Query: 325 -LVETSGGDMRRAITCLQS 342
+ T G D+ ++ L S
Sbjct: 297 DMRLTDGSDVTLSLLHLVS 315
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 105/199 (52%), Gaps = 16/199 (8%)
Query: 268 IEKLLKVDSFQVLEKYIEDLI--LEAYSATQLFDQFHDIVMLA--SSLSDKQKALFKA-- 321
+E +V F ++ Y+ +I + + A F VML + ++DK+ +
Sbjct: 131 METCTRVTRFCIICNYVSRIISPIASRCAKFRFQPVSTEVMLERLNMIADKEGFQLPSDV 190
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSF 378
+ LV SGGD+RRAIT +Q+ L G + +D++E IP+ I L+ K +SF
Sbjct: 191 TDALVNISGGDLRRAITMMQNTYILH-GNSMKGQDIIENAATIPDSVILDLVNSCKYNSF 249
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMS--ASSLSDKQKALILEKLAECNARLQDGAS 436
+ ++ + D+I + Y A +Q HD VMS A +S K K++I + L + RL DG+
Sbjct: 250 EKIQSKVNDIIADGYPA----NQIHDWVMSKEAFGISAKSKSIICKALGTTDMRLTDGSD 305
Query: 437 EYIQILDLGSIVIKANKTA 455
+ +L L S++++A +T+
Sbjct: 306 VTLSLLHLVSVIMQALQTS 324
>gi|315042534|ref|XP_003170643.1| replication factor C subunit 2 [Arthroderma gypseum CBS 118893]
gi|311344432|gb|EFR03635.1| replication factor C subunit 2 [Arthroderma gypseum CBS 118893]
Length = 386
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 143/327 (43%), Positives = 203/327 (62%), Gaps = 32/327 (9%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTS 81
V+ + + + PWVEKYRPKT+DDV Q +SVL++ L ++LPH LFYG PGTGKTS
Sbjct: 22 VTNNQDSDQQAQPWVEKYRPKTLDDVTAQDHTISVLQRNLHASNLPHMLFYGSPGTGKTS 81
Query: 82 TMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK-----PC 135
T++A LFG + R R+LELNASD+RGI ++R+K+K FA+ S D PC
Sbjct: 82 TILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPPDPAYRSQYPC 141
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
PPFKI+ILDEADSMTH AQ+ALRRTMEK ++ TRFCL+CNYV+ II P+ SRCSKFRFK
Sbjct: 142 PPFKIIILDEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIIDPVASRCSKFRFKV 201
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL-KGGEG---- 250
L + RL I E + + +ETL+ S GD+R+AIT +QS ARL + G G
Sbjct: 202 LDGSAAQNRLVEIARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSSARLARYGSGKKKD 261
Query: 251 --------------IVNEDVLEVTGVIPKPWIEKLL-------KVDSFQVLEKYIEDLIL 289
I + EV+G++P+ +++++ + +++ + + DL+
Sbjct: 262 TSDKEMELDDTKPRITVRSIEEVSGLVPETVMQQVIAALRPNKRTSNYEQISNLVADLVA 321
Query: 290 EAYSATQLFDQFHDIVMLASSLSDKQK 316
+ +SA+Q+ Q + V+ S+SD K
Sbjct: 322 DGWSASQVLSQTYQAVLQDESISDAHK 348
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 78/149 (52%), Gaps = 26/149 (17%)
Query: 322 LETLVETSGGDMRRAITCLQSCARL-KGGEG------------------IVNEDVLEVTG 362
+ETL+ S GD+R+AIT +QS ARL + G G I + EV+G
Sbjct: 227 VETLLRCSDGDLRKAITFMQSSARLARYGSGKKKDTSDKEMELDDTKPRITVRSIEEVSG 286
Query: 363 VIPNPWIEKLL-------KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDK 415
++P +++++ + +++ + + DL+ + +SA+Q+ Q + V+ S+SD
Sbjct: 287 LVPETVMQQVIAALRPNKRTSNYEQISNLVADLVADGWSASQVLSQTYQAVLQDESISDA 346
Query: 416 QKALILEKLAECNARLQDGASEYIQILDL 444
K IL+ +E + RL DGA E++ LD
Sbjct: 347 HKNQILKVCSEFDKRLVDGADEHLSTLDF 375
>gi|320588439|gb|EFX00908.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
Length = 395
Score = 274 bits (700), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 152/361 (42%), Positives = 212/361 (58%), Gaps = 48/361 (13%)
Query: 1 MEAF--LRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLK 58
M +F L+ KL ++SK T+ +R +P WVEKYRPKT+ DV Q V+VL+
Sbjct: 1 MASFFDLKARKLAAANGTASKNDKQTNETSRAQP--WVEKYRPKTLSDVTAQDHTVTVLQ 58
Query: 59 KCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKV 117
+ L ++LPH LFYGPPGTGKTST++A +L+G + + R+LELNASD+RGI ++R+KV
Sbjct: 59 RTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPEFVKSRVLELNASDERGISIVREKV 118
Query: 118 KTFAQ----QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLI 173
K FA+ G+ +D PCPPFK+++LDEADSMT AQ+ALRRTME +K TRFCLI
Sbjct: 119 KDFARMQLTNPPPGY-RDRYPCPPFKLIVLDEADSMTQDAQSALRRTMETYSKITRFCLI 177
Query: 174 CNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMR 233
CNYV+ II PL SRCSKFRFK L + R++ I +E V A++ L+ S GD+R
Sbjct: 178 CNYVTRIIDPLASRCSKFRFKSLDQGNARARVEDIATREHVSLAPGAVDALIRCSEGDLR 237
Query: 234 RAITCLQSCARLKGGE------------------------------GIVNEDVLEVTGVI 263
+AIT LQS ARL G E I + V E+ GVI
Sbjct: 238 KAITFLQSAARLVGQEEEDKKEQKEQKEQKDQDKEEDSMDVDDSRPAITVQIVEEIAGVI 297
Query: 264 PKPWIEKLLKV--------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQ 315
P I +L++ ++ + +ED++ + +SA Q+ Q + V+ ++ D Q
Sbjct: 298 PDDVISQLVQAIRPAAKGGSTYAAIASVVEDMVADGWSAGQVVTQLYQTVVYDETVPDAQ 357
Query: 316 K 316
K
Sbjct: 358 K 358
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 38/163 (23%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGE------------------------------ 350
A++ L+ S GD+R+AIT LQS ARL G E
Sbjct: 224 AVDALIRCSEGDLRKAITFLQSAARLVGQEEEDKKEQKEQKEQKDQDKEEDSMDVDDSRP 283
Query: 351 GIVNEDVLEVTGVIPNPWIEKLLKV--------DSFQVLEKYIEDLILEAYSATQLFDQF 402
I + V E+ GVIP+ I +L++ ++ + +ED++ + +SA Q+ Q
Sbjct: 284 AITVQIVEEIAGVIPDDVISQLVQAIRPAAKGGSTYAAIASVVEDMVADGWSAGQVVTQL 343
Query: 403 HDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 445
+ V+ ++ D QK I+ +E + RL DGA E++ ILDL
Sbjct: 344 YQTVVYDETVPDAQKNKIVLVFSEVDKRLVDGADEHLSILDLA 386
>gi|452836376|gb|EME38320.1| hypothetical protein DOTSEDRAFT_161207 [Dothistroma septosporum
NZE10]
Length = 410
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 152/341 (44%), Positives = 205/341 (60%), Gaps = 54/341 (15%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N+ PWVEKYRPK++DDV Q V+VL++ L A+LPH LFYGPPGTGKTST++A Q
Sbjct: 31 NRLQPWVEKYRPKSLDDVTAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQ 90
Query: 90 LFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTAS-------GFNQDGK-PCPPFKI 140
L+G ++ + R+LELNASD+RGI ++R+KVK FA+ S G K PCPP+KI
Sbjct: 91 LYGPELMKTRVLELNASDERGISIVREKVKDFARMQLSNPPSGPAGEEYKKKYPCPPYKI 150
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
++LDEADSMT AQ+ALRRTME +K TRFCL+CNYV+ II PL SRCSKFRFK L E
Sbjct: 151 IVLDEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIDPLASRCSKFRFKSLDEGN 210
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG------------ 248
R++ I + E V + ETL+ S GD+R+AIT LQS ARL G
Sbjct: 211 AGRRIEDIAKLEGVKMEEGVTETLLRCSEGDLRKAITFLQSAARLVGAVQLGAPSGDKKR 270
Query: 249 --EGIVNED----------------------VLEVTGVIPKPWIEKLL--------KVDS 276
+ +V +D + E+ GVIP+ I++L +
Sbjct: 271 KRKAVVEDDDAMDIDSESTPTTSSIPITISSIEEIAGVIPEDTIDRLRTAITPKSGRSAP 330
Query: 277 FQVLEKYIEDLILEAYSATQLFDQFHD-IVMLASSLSDKQK 316
+ + + +EDL+ E +SATQ+ Q +D IV+L ++ D K
Sbjct: 331 YGPIAQAVEDLVAEGWSATQIVTQLYDKIVLLDETVDDAAK 371
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 79/167 (47%), Gaps = 45/167 (26%)
Query: 323 ETLVETSGGDMRRAITCLQSCARLKGG--------------EGIVNED------------ 356
ETL+ S GD+R+AIT LQS ARL G + +V +D
Sbjct: 232 ETLLRCSEGDLRKAITFLQSAARLVGAVQLGAPSGDKKRKRKAVVEDDDAMDIDSESTPT 291
Query: 357 ----------VLEVTGVIPNPWIEKLL--------KVDSFQVLEKYIEDLILEAYSATQL 398
+ E+ GVIP I++L + + + + +EDL+ E +SATQ+
Sbjct: 292 TSSIPITISSIEEIAGVIPEDTIDRLRTAITPKSGRSAPYGPIAQAVEDLVAEGWSATQI 351
Query: 399 FDQFHD-IVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 444
Q +D IV+ ++ D K I+ ++ + RL DG+ E++ ILDL
Sbjct: 352 VTQLYDKIVLLDETVDDAAKNKIMLFFSQTDKRLVDGSDEHLTILDL 398
>gi|146181988|ref|XP_001023745.2| ATPase, AAA family protein [Tetrahymena thermophila]
gi|146143985|gb|EAS03500.2| ATPase, AAA family protein [Tetrahymena thermophila SB210]
Length = 373
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 142/316 (44%), Positives = 204/316 (64%), Gaps = 7/316 (2%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N +PWVEKYRP I++V Q+EV+ L+ L +LPH + +GPPGTGKTS+++A Q
Sbjct: 39 NNLLPWVEKYRPNKIEEVSYQEEVIKSLQGVLLSGNLPHLILHGPPGTGKTSSILAFAKQ 98
Query: 90 LFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADS 148
L+G Y+ERILELNASDDRGIQ++RDK+K FAQQ S CP FKI+ILDEADS
Sbjct: 99 LYGPTFYKERILELNASDDRGIQIVRDKIKKFAQQVVSKNPDKSFKCPNFKIIILDEADS 158
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRR +E + +TRFC+ICNY++ II+PL SRC KFRFKP+ +T+L+ I
Sbjct: 159 MTTEAQSALRRIIEDTSSTTRFCIICNYITKIIEPLGSRCVKFRFKPIPLEAQITKLEEI 218
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWI 268
C+ E + + +ALE L++ S GD+R+++ LQS + L + I E + E++GV I
Sbjct: 219 CKTEDIEYEKEALEKLIKISNGDLRKSVNLLQSASTLYEKD-IKVEVIEEISGVNYLLCI 277
Query: 269 EKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETL 325
KL K+ F L++ ++ + + YS QL QF + ++ + ++ +KA + LE +
Sbjct: 278 NKLYKLLIGKDFDKLKEGVKQFLYQGYSPDQLLYQFSEYIISSKDFNEVKKA--RILEKI 335
Query: 326 VETSGGDMRRAITCLQ 341
G RA + LQ
Sbjct: 336 ALADKGLNERADSELQ 351
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 75/130 (57%), Gaps = 4/130 (3%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+ALE L++ S GD+R+++ LQS + L + I E + E++GV I KL K+
Sbjct: 229 EALEKLIKISNGDLRKSVNLLQSASTLYEKD-IKVEVIEEISGVNYLLCINKLYKLLIGK 287
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F L++ ++ + + YS QL QF + ++S+ ++ +KA ILEK+A + L + A
Sbjct: 288 DFDKLKEGVKQFLYQGYSPDQLLYQFSEYIISSKDFNEVKKARILEKIALADKGLNERAD 347
Query: 437 EYIQILDLGS 446
+QIL++ S
Sbjct: 348 SELQILNMFS 357
>gi|224000545|ref|XP_002289945.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
gi|220975153|gb|EED93482.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
Length = 346
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 139/296 (46%), Positives = 187/296 (63%), Gaps = 14/296 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF-G 92
PWVE+YRPK++ DV Q E++S LK + LPH LFYGPPGTGKTS +A C QLF
Sbjct: 16 PWVERYRPKSLQDVSHQGEIISTLKNAVETNRLPHLLFYGPPGTGKTSVALALCRQLFEP 75
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
R R+LELNASD+RGI V+RDK+K FA P PPFKI+ILDEAD++T
Sbjct: 76 SQLRRRVLELNASDERGISVVRDKIKHFASLAIDTETTKKYPNPPFKIIILDEADTVTRD 135
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQAALRR +E +K TRF LICNYV+ II+PL SRC+KFRF+PL +M R++YI +E
Sbjct: 136 AQAALRRVIEAYSKVTRFILICNYVTRIIEPLASRCAKFRFQPLPVESMKARIKYIAHEE 195
Query: 213 SVMCDF------KALETLVETSGGDMRRAITCLQSCARLKGGEG--IVNEDVLEVTGVIP 264
C F + ++ ++ S GDMRRA+T LQS L GG G I + + E+ G+ P
Sbjct: 196 H--CQFEEGKEEEVVDEILTLSQGDMRRAVTTLQSAHSLSGGAGEVIKKDSIAEMAGLPP 253
Query: 265 KPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
I+ L++V F ++KY+ D++L+ YSA L +++ + D+ KA
Sbjct: 254 PALIDGLIEVLRTGKFDDMKKYVMDIVLDGYSAEYLLSALMAKIIVLDGVEDEAKA 309
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 78/140 (55%), Gaps = 5/140 (3%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEG--IVNEDVLEVTGVIPNPWIEKLLKV-- 375
+ ++ ++ S GDMRRA+T LQS L GG G I + + E+ G+ P I+ L++V
Sbjct: 206 EVVDEILTLSQGDMRRAVTTLQSAHSLSGGAGEVIKKDSIAEMAGLPPPALIDGLIEVLR 265
Query: 376 -DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
F ++KY+ D++L+ YSA L ++ + D+ KA I ++A + L DG
Sbjct: 266 TGKFDDMKKYVMDIVLDGYSAEYLLSALMAKIIVLDGVEDEAKAKIAIQVATSDKNLIDG 325
Query: 435 ASEYIQILDLGSIVIKANKT 454
+ E +Q+L + S+ ++ KT
Sbjct: 326 SDETLQLLTVCSLALQCMKT 345
>gi|295672510|ref|XP_002796801.1| replication factor C subunit 2 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226282173|gb|EEH37739.1| replication factor C subunit 2 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 404
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 149/348 (42%), Positives = 206/348 (59%), Gaps = 49/348 (14%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKY---------RPKTIDDVIEQQEVVSVLKKCLSGADL 66
S K S + TR +P WVEKY RPKT+DDV Q+ ++VL++ L ++L
Sbjct: 20 SKPKASEKEADNTRLQP--WVEKYGIANPGIPSRPKTLDDVASQEHTITVLQRTLQASNL 77
Query: 67 PHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTA 125
PH LFYGPPGTGKTST++A LFG +YR RILELNASD+RGI ++R+K+K FA+
Sbjct: 78 PHMLFYGPPGTGKTSTILALSKSLFGPQLYRSRILELNASDERGISIVREKIKDFARMQL 137
Query: 126 SGFNQ------DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
S + PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+
Sbjct: 138 SHPPVSDTAYCEKYPCPPFKIIILDEADSMTQDAQSALRRTMERYSRITRFCLVCNYVTR 197
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II PL SRCSKFRFK L + +RL+ I E + +ETL+ S GD+RRAIT +
Sbjct: 198 IIDPLASRCSKFRFKALDGSAAGSRLEEIARVEKLRLADGCIETLIRCSEGDLRRAITFM 257
Query: 240 QSCARL-----------------------KGGEGIVN-EDVLEVTGVIPKPWIEKLLKVD 275
QS ARL G EG++ + E+ GV+P + +L+K
Sbjct: 258 QSAARLVGSGLVSKPPPGKDEGGDEDMTDAGDEGVITVRTIEEIAGVVPDDIVNRLVKAL 317
Query: 276 S-------FQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
++ + K + D++ + +SA+Q+ Q + I++ S+ D K
Sbjct: 318 QPKKGRLPYEEVSKVVTDIVADGWSASQMLTQLYQIIVFDDSIEDIHK 365
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 79/155 (50%), Gaps = 31/155 (20%)
Query: 322 LETLVETSGGDMRRAITCLQSCARL-----------------------KGGEGIVN-EDV 357
+ETL+ S GD+RRAIT +QS ARL G EG++ +
Sbjct: 239 IETLIRCSEGDLRRAITFMQSAARLVGSGLVSKPPPGKDEGGDEDMTDAGDEGVITVRTI 298
Query: 358 LEVTGVIPNPWIEKLLKVDS-------FQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS 410
E+ GV+P+ + +L+K ++ + K + D++ + +SA+Q+ Q + I++
Sbjct: 299 EEIAGVVPDDIVNRLVKALQPKKGRLPYEEVSKVVTDIVADGWSASQMLTQLYQIIVFDD 358
Query: 411 SLSDKQKALILEKLAECNARLQDGASEYIQILDLG 445
S+ D K I+ +E + RL DGA E++ ILDL
Sbjct: 359 SIEDIHKNSIVMVFSEFDKRLIDGADEHLTILDLA 393
>gi|452979410|gb|EME79172.1| hypothetical protein MYCFIDRAFT_79709 [Pseudocercospora fijiensis
CIRAD86]
Length = 405
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 159/378 (42%), Positives = 213/378 (56%), Gaps = 60/378 (15%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
NK PWVEKYRPK++DDV Q V+VL++ L A+LPH LFYGPPGTGKTST++A Q
Sbjct: 31 NKLQPWVEKYRPKSLDDVAAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQ 90
Query: 90 LFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN--------QDGKPCPPFKI 140
L+G ++ + R+LELNASD+RGI ++R+KVK FA+ S + PCPP+KI
Sbjct: 91 LYGPELIKSRVLELNASDERGISIVREKVKDFARMQLSNPPAGPAGEEYRKKYPCPPYKI 150
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
++LDEADSMT AQ+ALRRTME +K TRFCL+CNYV+ II PL SRCSKFRFK L E
Sbjct: 151 IVLDEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIDPLASRCSKFRFKLLDEGN 210
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG------------ 248
R++ I E+V + TL+ S GD+R+AIT LQS ARL G
Sbjct: 211 AGRRIEDIARLENVTLEEGVTNTLLRCSDGDLRKAITFLQSAARLVGAVQASTQPDKKRK 270
Query: 249 ---------------------EGIVNEDVLEVTGVIPKPWIEKLLKVDS--------FQV 279
I + + E+ GVIP IE+L + +
Sbjct: 271 RTKVEEDDDDADAMDIDAAPSPPITVQSIEEIAGVIPNNTIERLTTAMTPKPKSRAPYGP 330
Query: 280 LEKYIEDLILEAYSATQLFDQFHDIVMLAS-SLSDKQKALFKALETLVET-----SGGDM 333
+ + +EDL+ E +SATQ+ Q +D ++L ++ D K K + T ET G D
Sbjct: 331 IAQAVEDLVAEGWSATQIVSQLYDKIVLGDETVGDGAKN--KIMLTFSETDKRLVDGSD- 387
Query: 334 RRAITCLQSCARLKGGEG 351
+T L C ++ G G
Sbjct: 388 -EHLTILDLCLQISGMMG 404
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 42/163 (25%)
Query: 324 TLVETSGGDMRRAITCLQSCARLKGG---------------------------------E 350
TL+ S GD+R+AIT LQS ARL G
Sbjct: 233 TLLRCSDGDLRKAITFLQSAARLVGAVQASTQPDKKRKRTKVEEDDDDADAMDIDAAPSP 292
Query: 351 GIVNEDVLEVTGVIPNPWIEKLLKVDS--------FQVLEKYIEDLILEAYSATQLFDQF 402
I + + E+ GVIPN IE+L + + + + +EDL+ E +SATQ+ Q
Sbjct: 293 PITVQSIEEIAGVIPNNTIERLTTAMTPKPKSRAPYGPIAQAVEDLVAEGWSATQIVSQL 352
Query: 403 HD-IVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 444
+D IV+ ++ D K I+ +E + RL DG+ E++ ILDL
Sbjct: 353 YDKIVLGDETVGDGAKNKIMLTFSETDKRLVDGSDEHLTILDL 395
>gi|50304409|ref|XP_452154.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641286|emb|CAH02547.1| KLLA0B13992p [Kluyveromyces lactis]
Length = 352
Score = 272 bits (695), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 139/292 (47%), Positives = 195/292 (66%), Gaps = 15/292 (5%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
+ GK + KP WVEKYRP+ +DDV Q V+VLK+ L A+LPH LFYGPPGTGKTST+
Sbjct: 15 SDGKGQAKP--WVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTI 72
Query: 84 IAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD---GKPCPPFK 139
+A +L+G + R+LELNASD+RGI ++R+KVK FA+ T S ++ PCPP+K
Sbjct: 73 LALTKELYGPHLSNSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLANYPCPPYK 132
Query: 140 IVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAEN 199
I+ILDEADSMT AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L +
Sbjct: 133 IIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSS 192
Query: 200 TMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL----KGGEGIVNED 255
L+RLQ+I +ES+ + LE +++ S GD+R+AIT LQS A++ I +
Sbjct: 193 NALSRLQFIANEESLKYEDGVLERILDISQGDLRKAITLLQSAAKIVLQNDDANTITLKH 252
Query: 256 VLEVTGVIPKPWIEKLLKV----DSFQVLEKYIEDLILEAYSATQLFDQFHD 303
E++G I + ++ L+ V D ++++K +++ + + +SA Q H+
Sbjct: 253 ANELSGTIHEEILQDLINVIKGKDLNKIIDK-VQEFVNQGWSAASALTQLHE 303
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 72/132 (54%), Gaps = 9/132 (6%)
Query: 322 LETLVETSGGDMRRAITCLQSCARL----KGGEGIVNEDVLEVTGVIPNPWIEKLLKV-- 375
LE +++ S GD+R+AIT LQS A++ I + E++G I ++ L+ V
Sbjct: 214 LERILDISQGDLRKAITLLQSAAKIVLQNDDANTITLKHANELSGTIHEEILQDLINVIK 273
Query: 376 --DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQD 433
D ++++K +++ + + +SA Q H+ + S + K + L + +++L +
Sbjct: 274 GKDLNKIIDK-VQEFVNQGWSAASALTQLHEYYIKNESYDTEFKNKVSWLLFDSDSKLTN 332
Query: 434 GASEYIQILDLG 445
GASE++Q+L+L
Sbjct: 333 GASEHLQMLNLA 344
>gi|412990864|emb|CCO18236.1| predicted protein [Bathycoccus prasinos]
Length = 350
Score = 271 bits (694), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 144/293 (49%), Positives = 195/293 (66%), Gaps = 8/293 (2%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
K PWV+KYRPK + DV Q EVVS L+K + +LPH LFYGPPGTGKT+ +A C Q
Sbjct: 21 KKKEPWVDKYRPKKVSDVAYQTEVVSALEKAMETHNLPHMLFYGPPGTGKTTCALAICKQ 80
Query: 90 LFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADS 148
L+G ++ ++R+LELNASD+RGI V+R K+K+FA T G G PCPP+KI+ILDEADS
Sbjct: 81 LYGPELGKKRVLELNASDERGISVVRGKIKSFASTTV-GEGVPGYPCPPYKILILDEADS 139
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT+ AQ+ALRR ME ++ TRF ++CNYVS II P++SRC+KFRFK L TM R+ +I
Sbjct: 140 MTNDAQSALRRMMETYSRVTRFFILCNYVSKIIDPISSRCAKFRFKSLDGGTMHERINFI 199
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWI 268
+ E++ L+ L S GDMR+AIT LQS A L G E + + + EV GVIP I
Sbjct: 200 AKGENLQLAEGTLQALEHVSAGDMRKAITLLQSAASLFGPE-LTGDRIREVAGVIPDEKI 258
Query: 269 EKLLKV----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
E+LL++ DS Q + ED++ + + Q+ +QF + + L D+ KA
Sbjct: 259 EELLQLCVAGDS-QKSQALAEDILKDGFPCLQILEQFGYYLADSDLLEDEMKA 310
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 72/124 (58%), Gaps = 6/124 (4%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV----DS 377
L+ L S GDMR+AIT LQS A L G E + + + EV GVIP+ IE+LL++ DS
Sbjct: 212 LQALEHVSAGDMRKAITLLQSAASLFGPE-LTGDRIREVAGVIPDEKIEELLQLCVAGDS 270
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
Q + ED++ + + Q+ +QF + + L D+ KA I KL E +L DGA E
Sbjct: 271 -QKSQALAEDILKDGFPCLQILEQFGYYLADSDLLEDEMKAEICLKLGEVEKKLVDGADE 329
Query: 438 YIQI 441
++Q+
Sbjct: 330 WLQL 333
>gi|134057264|emb|CAK96427.1| unnamed protein product [Aspergillus niger]
Length = 388
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 144/335 (42%), Positives = 205/335 (61%), Gaps = 36/335 (10%)
Query: 15 PSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGP 74
PS K + + + + +P P RPKT+DDV Q VL++ L ++LPH LFYGP
Sbjct: 19 PSKPKPTDNKEEQAKQQPWP---HSRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGP 75
Query: 75 PGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQT---ASGFNQ 130
PGTGKTST++A LFG +YR RILELNASD+RGI ++R+K+K FA+ ++G +
Sbjct: 76 PGTGKTSTILALAKSLFGPSLYRSRILELNASDERGIGIVREKIKNFARAQLTHSTGLGE 135
Query: 131 D---GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSR 187
+ PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II+PL SR
Sbjct: 136 EYLAQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASR 195
Query: 188 CSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG 247
CSKFRFK L RL++I + E++ + ++ L+ S GDMRRAIT +QS A+L G
Sbjct: 196 CSKFRFKALDNTAAGERLEHIAKVENLRLEDGVVDKLIACSEGDMRRAITYMQSAAKLVG 255
Query: 248 G-------------------EGIVNEDVLEVTGVIPKPWIEKLLKV-------DSFQVLE 281
E I + E+ GV+P+ ++ L++ S++ +
Sbjct: 256 AGRAGKKDEDEDEEMTDQESEVITVRTIEEIAGVVPESVLDALVQAMQPKKIGSSYEAVA 315
Query: 282 KYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
K + D+I + +SATQL Q + V+ ++ D QK
Sbjct: 316 KVVTDIIADGWSATQLLLQLYRRVVFNDAIPDIQK 350
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 26/150 (17%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGG-------------------EGIVNEDVLEVTG 362
++ L+ S GDMRRAIT +QS A+L G E I + E+ G
Sbjct: 229 VDKLIACSEGDMRRAITYMQSAAKLVGAGRAGKKDEDEDEEMTDQESEVITVRTIEEIAG 288
Query: 363 VIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDK 415
V+P ++ L++ S++ + K + D+I + +SATQL Q + V+ ++ D
Sbjct: 289 VVPESVLDALVQAMQPKKIGSSYEAVAKVVTDIIADGWSATQLLLQLYRRVVFNDAIPDI 348
Query: 416 QKALILEKLAECNARLQDGASEYIQILDLG 445
QK I+ ++ + RL DGA E++ ILD+
Sbjct: 349 QKNKIVMVFSDMDRRLVDGADEHLSILDVA 378
>gi|449299144|gb|EMC95158.1| hypothetical protein BAUCODRAFT_35150 [Baudoinia compniacensis UAMH
10762]
Length = 411
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 157/378 (41%), Positives = 216/378 (57%), Gaps = 62/378 (16%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N+ PWVEKYRP+++DDV Q V+VL++ L ++LPH LFYGPPGTGKTST++A Q
Sbjct: 32 NRLQPWVEKYRPRSLDDVTAQDHTVTVLRRMLQSSNLPHMLFYGPPGTGKTSTVLALAKQ 91
Query: 90 LFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN--------QDGKPCPPFKI 140
L+G ++ + R+LELNASD+RGI ++R+KVK FA+ S + PCPP+KI
Sbjct: 92 LYGPELIKSRVLELNASDERGISIVREKVKDFARMQLSNPPAGPAGEEYRKKYPCPPYKI 151
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
V+LDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK L E
Sbjct: 152 VVLDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDEAN 211
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG------------ 248
RL+ I + E+V +ETL+ S GD+R+AIT LQS A+L G
Sbjct: 212 AGKRLEDIAKLENVRLQDGVIETLLRCSEGDLRKAITFLQSAAKLVGAVQAPAGTLPDKK 271
Query: 249 --------------------------EGIVNEDVLEVTGVIPKPWIEKLL-------KVD 275
+ + ++ GVIP I+ L K
Sbjct: 272 RKRAKIEDDEDEDAMDVDQQTTGAESPAVTVRSIEDIAGVIPDGTIDSLFTAMQPSSKGT 331
Query: 276 SFQVLEKYIEDLILEAYSATQLFDQFHD-IVMLASSLSDKQKA----LFKALETLVETSG 330
+ + K +EDLI E +SA+Q+ +Q +D +V+ + D+QKA +F A++ + G
Sbjct: 332 IYGRVAKVVEDLIAEGWSASQIVNQLYDRVVVHDEATGDRQKARIVCIFSAVDKRL-VDG 390
Query: 331 GDMRRAITCLQSCARLKG 348
D +T L C ++ G
Sbjct: 391 SD--EHLTILDLCLQIAG 406
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 46/169 (27%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGG-------------------------------- 349
+ETL+ S GD+R+AIT LQS A+L G
Sbjct: 232 IETLLRCSEGDLRKAITFLQSAAKLVGAVQAPAGTLPDKKRKRAKIEDDEDEDAMDVDQQ 291
Query: 350 ------EGIVNEDVLEVTGVIPNPWIEKLL-------KVDSFQVLEKYIEDLILEAYSAT 396
+ + ++ GVIP+ I+ L K + + K +EDLI E +SA+
Sbjct: 292 TTGAESPAVTVRSIEDIAGVIPDGTIDSLFTAMQPSSKGTIYGRVAKVVEDLIAEGWSAS 351
Query: 397 QLFDQFHD-IVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 444
Q+ +Q +D +V+ + D+QKA I+ + + RL DG+ E++ ILDL
Sbjct: 352 QIVNQLYDRVVVHDEATGDRQKARIVCIFSAVDKRLVDGSDEHLTILDL 400
>gi|296807688|ref|XP_002844229.1| activator 1 41 kDa subunit [Arthroderma otae CBS 113480]
gi|238843712|gb|EEQ33374.1| activator 1 41 kDa subunit [Arthroderma otae CBS 113480]
Length = 390
Score = 270 bits (691), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 144/318 (45%), Positives = 200/318 (62%), Gaps = 35/318 (11%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPKT+DDV Q +SVL++ L ++LPH LFYG PGTGKTST++A LFG
Sbjct: 35 PWVEKYRPKTLDDVAAQDHTISVLQRNLHASNLPHMLFYGSPGTGKTSTILAMSKSLFGP 94
Query: 94 -MYRERILELNASDDRGIQVIRDKVKTFA-----QQTASGFNQDGKPCPPFKIVILDEAD 147
+ R R+LELNASD+RGI ++R+K+K FA Q A + PCPPFKIVILDEAD
Sbjct: 95 ALVRSRVLELNASDERGISIVREKIKDFARMHLSQPPADPAYRSQYPCPPFKIVILDEAD 154
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
SMTH AQ+ALRRTMEK ++ TRFCL+CNYV+ II P+ SRCSKFRFK L + +RL
Sbjct: 155 SMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIIDPVASRCSKFRFKVLDGSAARSRLVE 214
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL-KGGEG---------------- 250
I E + + +ETL+ S GD+R+AIT +QS ARL + G G
Sbjct: 215 IARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSSARLARFGSGKKKEVSDETAEAKDTK 274
Query: 251 --IVNEDVLEVTGVIPKPWIEKLL-------KVDSFQVLEKYIEDLILEAYSATQLFDQ- 300
I + + EV+G++P+ +++++ +V + + + DL+ + +SA+Q+ Q
Sbjct: 275 SKITVKSIEEVSGLVPETVMDRVMAALRPNKRVSKYDEISNLVTDLVADGWSASQVLSQC 334
Query: 301 --FHDIVMLASSLSDKQK 316
+ V+ ++SD QK
Sbjct: 335 FKTYQAVLQDEAVSDVQK 352
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 29/152 (19%)
Query: 322 LETLVETSGGDMRRAITCLQSCARL-KGGEG------------------IVNEDVLEVTG 362
+ETL+ S GD+R+AIT +QS ARL + G G I + + EV+G
Sbjct: 228 VETLLRCSDGDLRKAITFMQSSARLARFGSGKKKEVSDETAEAKDTKSKITVKSIEEVSG 287
Query: 363 VIPNPWIEKLL-------KVDSFQVLEKYIEDLILEAYSATQLFDQ---FHDIVMSASSL 412
++P +++++ +V + + + DL+ + +SA+Q+ Q + V+ ++
Sbjct: 288 LVPETVMDRVMAALRPNKRVSKYDEISNLVTDLVADGWSASQVLSQCFKTYQAVLQDEAV 347
Query: 413 SDKQKALILEKLAECNARLQDGASEYIQILDL 444
SD QK IL+ +E + RL DGA E++ LD
Sbjct: 348 SDVQKNQILKVCSEFDKRLVDGADEHLSTLDF 379
>gi|171680165|ref|XP_001905028.1| hypothetical protein [Podospora anserina S mat+]
gi|170939709|emb|CAP64935.1| unnamed protein product [Podospora anserina S mat+]
Length = 405
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/333 (44%), Positives = 199/333 (59%), Gaps = 50/333 (15%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGAD--------------------LPHFLFYG 73
PWVEKYRPKT+ DV Q ++VL++ L ++ LPH LFYG
Sbjct: 35 PWVEKYRPKTLSDVTAQDHTITVLQRTLQASNVCSPPSPPSSFPTNMTLSPQLPHMLFYG 94
Query: 74 PPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ----QTASGF 128
PPGTGKTST++A +L+G ++ + R+LELNASD+RGI ++R+KVK FA+ +S
Sbjct: 95 PPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVREKVKDFARMQLTNVSSAA 154
Query: 129 NQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRC 188
+ PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL SRC
Sbjct: 155 YKARYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRC 214
Query: 189 SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG 248
SKFRFK L + RL+ I E+E V D A+E L+ + GD+R+AIT LQS ARL G
Sbjct: 215 SKFRFKSLDQGNAKKRLEEIAEKEKVGLDEGAVEGLINCAEGDLRKAITYLQSAARLVGA 274
Query: 249 -----------------EGIVNEDVLE-VTGVIPKPWIEKLLKV-------DSFQVLEKY 283
+ V+ +L+ + GVIP I LLK ++ + K
Sbjct: 275 VQQPGGGDDGEDGMDVDKKTVSVKILQDIAGVIPDETIHTLLKAMRPTTFGGNYTPIAKE 334
Query: 284 IEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ED++ + +SA Q+ Q + V+ ++ D QK
Sbjct: 335 VEDMVADGWSAGQVVTQLYQAVVYDETIEDAQK 367
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 25/150 (16%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGG-----------------EGIVNEDVLE-VTG 362
A+E L+ + GD+R+AIT LQS ARL G + V+ +L+ + G
Sbjct: 246 AVEGLINCAEGDLRKAITYLQSAARLVGAVQQPGGGDDGEDGMDVDKKTVSVKILQDIAG 305
Query: 363 VIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDK 415
VIP+ I LLK ++ + K +ED++ + +SA Q+ Q + V+ ++ D
Sbjct: 306 VIPDETIHTLLKAMRPTTFGGNYTPIAKEVEDMVADGWSAGQVVTQLYQAVVYDETIEDA 365
Query: 416 QKALILEKLAECNARLQDGASEYIQILDLG 445
QK IL +E + RL DGA E++ ILDL
Sbjct: 366 QKNKILLVFSEIDKRLVDGADEHLSILDLA 395
>gi|449523838|ref|XP_004168930.1| PREDICTED: replication factor C subunit 4-like [Cucumis sativus]
Length = 219
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 130/209 (62%), Positives = 153/209 (73%), Gaps = 2/209 (0%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q EVV VL L A+ PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y+ R+LELNASDDRGI V+R K+K FA +SG Q G PCPPFKI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTE 129
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M R+ +I +
Sbjct: 130 DAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHIGNE 189
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQ 240
E + D +AL TL S GD+RRAIT LQ
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQ 218
>gi|170577995|ref|XP_001894218.1| replication factor C, 37kDa subunit [Brugia malayi]
gi|158599258|gb|EDP36928.1| replication factor C, 37kDa subunit, putative [Brugia malayi]
Length = 315
Score = 268 bits (686), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 129/270 (47%), Positives = 186/270 (68%), Gaps = 7/270 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF- 91
+PWVEKYRP+ +++V Q EVVSVLKK L GADLP+ LFYGPPGTGKTS IA C QLF
Sbjct: 21 IPWVEKYRPRKVEEVAFQNEVVSVLKKVLQGADLPNLLFYGPPGTGKTSAAIALCRQLFR 80
Query: 92 -GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
D YR+R++E+NASD+RGI ++R+K+K FA++ S DG P K++ILDEAD+MT
Sbjct: 81 NTDTYRDRVMEMNASDERGINIVRNKIKEFARRAVSSHLPDGSPVVGLKVIILDEADAMT 140
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQAALRRTME+E+++TRF LICNY++ II PLTSRC+KFRFK ++ + RL++IC+
Sbjct: 141 TPAQAALRRTMERESRTTRFFLICNYITRIIDPLTSRCAKFRFKSISSESQEKRLKWICQ 200
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEK 270
E++ D A+ L+E GDMR+++T LQ+ + + ++ DV + G +P +++
Sbjct: 201 NENIEFDPLAISELIELCDGDMRKSVTALQTISSCH--KKLIPADVRQFLGAVPDDVVQQ 258
Query: 271 LL---KVDSFQVLEKYIEDLILEAYSATQL 297
+ + + L IE++ E Y ++
Sbjct: 259 FVASCRSRNHNQLYACIENIRREGYGECEM 288
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 36/139 (25%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDS 377
A+ L+E GDMR+++T LQ+ + + ++ DV + G +P+ +++ + + +
Sbjct: 210 AISELIELCDGDMRKSVTALQTISSCH--KKLIPADVRQFLGAVPDDVVQQFVASCRSRN 267
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
L IE++ E Y EC R+ DGA+E
Sbjct: 268 HNQLYACIENIRREGY-------------------------------GECEMRILDGANE 296
Query: 438 YIQILDLGSIVIKANKTAV 456
++Q+LD G++V++ KT++
Sbjct: 297 FLQLLDFGTVVMEQFKTSL 315
>gi|190360157|sp|P0C7N7.1|RFC2_PHANO RecName: Full=Replication factor C subunit 2; Short=Replication
factor C2
Length = 411
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 150/374 (40%), Positives = 204/374 (54%), Gaps = 60/374 (16%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
TS + N+ PWVEKYRPKT+ +V Q + +L + L ++LPH LFYGPPGTGKTST+
Sbjct: 24 TSKQESNRLQPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTI 83
Query: 84 IAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQ---TASGFN---------- 129
+A QL+G ++ + R+LELNASD+RGI ++R KVK FA+Q A +N
Sbjct: 84 LALAKQLYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGE 143
Query: 130 ------QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183
+D CPPFKI++LDEADSMT AQ+ALRRTME ++ TRFCL+CNYV+ II P
Sbjct: 144 AKMVRYRDKYSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDP 203
Query: 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
L SRCSKFRFK L + + R+ I + E V D E LV + GD+R+AIT LQS A
Sbjct: 204 LASRCSKFRFKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQSAA 263
Query: 244 RLKGG----------------------------EGIVNEDVLEVTGVIPKPWIEKL---- 271
RL G I E + E+ GVIP P +
Sbjct: 264 RLVGATQTAGRKKKVVVDDEDEMDIDPPSAPSKTTISLEQIAEIAGVIPAPTLASFSDAL 323
Query: 272 -----LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLV 326
K + + K +E++I E +SA+Q Q ++ VM + D +K + +
Sbjct: 324 FPKSAAKSIRYNEIAKVVENMIAEGWSASQTVSQLYEQVMFDERVEDIKKVRLAGVFSET 383
Query: 327 E---TSGGDMRRAI 337
+ GGD A+
Sbjct: 384 DKRLVDGGDEHLAV 397
Score = 68.2 bits (165), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 37/160 (23%)
Query: 323 ETLVETSGGDMRRAITCLQSCARLKGG----------------------------EGIVN 354
E LV + GD+R+AIT LQS ARL G I
Sbjct: 242 EELVRVADGDLRKAITFLQSAARLVGATQTAGRKKKVVVDDEDEMDIDPPSAPSKTTISL 301
Query: 355 EDVLEVTGVIPNPWIEKL---------LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDI 405
E + E+ GVIP P + K + + K +E++I E +SA+Q Q ++
Sbjct: 302 EQIAEIAGVIPAPTLASFSDALFPKSAAKSIRYNEIAKVVENMIAEGWSASQTVSQLYEQ 361
Query: 406 VMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 445
VM + D +K + +E + RL DG E++ +LDLG
Sbjct: 362 VMFDERVEDIKKVRLAGVFSETDKRLVDGGDEHLAVLDLG 401
>gi|67525023|ref|XP_660573.1| hypothetical protein AN2969.2 [Aspergillus nidulans FGSC A4]
gi|40744364|gb|EAA63540.1| hypothetical protein AN2969.2 [Aspergillus nidulans FGSC A4]
Length = 754
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 141/316 (44%), Positives = 194/316 (61%), Gaps = 33/316 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGA-DLPHFLFYGPPGTGKTSTMIAACHQLFG 92
PWVEKYRPKT+DDV Q + A LPH LFYGPPGTGKTST++A LFG
Sbjct: 401 PWVEKYRPKTLDDVAAQDHTTKTWARTNQAALQLPHMLFYGPPGTGKTSTILALAKSLFG 460
Query: 93 D-MYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGK-----PCPPFKIVILDE 145
+YR RILELNASD+RGI ++R+KVK FA+ Q + D + PCPPFKI+ILDE
Sbjct: 461 PALYRSRILELNASDERGIGIVREKVKGFARVQLSHPTGLDAEYFEKYPCPPFKIIILDE 520
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
ADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II+PL SRCSKFRFKPL + RL
Sbjct: 521 ADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGDRL 580
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL------------------KG 247
I + E + + ++ L+ S GD+RRAIT LQS ARL +G
Sbjct: 581 AQIAQLEKLSLENGVVDKLISCSDGDLRRAITYLQSAARLVGAAKAAKDGDEDEEMKDQG 640
Query: 248 GEGIVNEDVLEVTGVIPKPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQ 300
+ I + E+ GV+P+ ++ L++ ++ + K + +++ + +SATQ+ Q
Sbjct: 641 SDMITVSTIEEIAGVVPESVLDGLIQSLQPKRMGSPYEAVSKVVTEIVADGWSATQILLQ 700
Query: 301 FHDIVMLASSLSDKQK 316
+ ++ ++ D QK
Sbjct: 701 LYRRMVYNDAIPDIQK 716
Score = 67.4 bits (163), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 76/149 (51%), Gaps = 25/149 (16%)
Query: 322 LETLVETSGGDMRRAITCLQSCARL------------------KGGEGIVNEDVLEVTGV 363
++ L+ S GD+RRAIT LQS ARL +G + I + E+ GV
Sbjct: 596 VDKLISCSDGDLRRAITYLQSAARLVGAAKAAKDGDEDEEMKDQGSDMITVSTIEEIAGV 655
Query: 364 IPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQ 416
+P ++ L++ ++ + K + +++ + +SATQ+ Q + ++ ++ D Q
Sbjct: 656 VPESVLDGLIQSLQPKRMGSPYEAVSKVVTEIVADGWSATQILLQLYRRMVYNDAIPDIQ 715
Query: 417 KALILEKLAECNARLQDGASEYIQILDLG 445
K I+ +E + RL DGA E++ ILD+
Sbjct: 716 KNKIVLVFSEMDKRLVDGADEHLSILDVA 744
>gi|255731300|ref|XP_002550574.1| activator 1 41 kDa subunit [Candida tropicalis MYA-3404]
gi|240131583|gb|EER31142.1| activator 1 41 kDa subunit [Candida tropicalis MYA-3404]
Length = 354
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 134/293 (45%), Positives = 194/293 (66%), Gaps = 15/293 (5%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK++ D+ Q+ V VL + ++ +LPH LFYGPPGTGKTST++A L+G
Sbjct: 22 PWVEKYRPKSLSDISSQEHTVKVLTQTITSGNLPHMLFYGPPGTGKTSTILALAKTLYGP 81
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG---KPCPPFKIVILDEADSM 149
++Y+ R+LELNASD+RGI ++R+K+K FA+ T S +++ PCPP+KI+ILDEADSM
Sbjct: 82 NLYKSRVLELNASDERGISIVREKIKNFARLTISNPSKEDLEKYPCPPYKIIILDEADSM 141
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+ AQ+ALRRTME TRF LICNY++ II PLTSRCSKFRFK L L RL++I
Sbjct: 142 TNDAQSALRRTMETYAGITRFVLICNYITRIIDPLTSRCSKFRFKLLNNENALLRLRFIA 201
Query: 210 EQESV-MCDFKALETLVETSGGDMRRAITCLQSCARLKG------GEGIVN-EDVLEVTG 261
+E++ L +++ S GD+R+ IT LQS A+L +GI+ + + E G
Sbjct: 202 NEENLRYTGDDVLNEVLKISAGDLRKGITYLQSAAKLSSTFDDNDDKGIITVKTIRETAG 261
Query: 262 VIPKPWIEKLLKVDSFQVLEKYIE---DLILEAYSATQLFDQFHDIVMLASSL 311
++ + +L+ + + ++K I+ ++ L +SA L DQ HDI++L L
Sbjct: 262 ILHDDVLNELIDIMKSKNVQKIIQAVNEIELNGWSAQILLDQLHDILILDDRL 314
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 72/134 (53%), Gaps = 10/134 (7%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKG------GEGIVN-EDVLEVTGVIPNPWIEKLL 373
L +++ S GD+R+ IT LQS A+L +GI+ + + E G++ + + +L+
Sbjct: 213 VLNEVLKISAGDLRKGITYLQSAAKLSSTFDDNDDKGIITVKTIRETAGILHDDVLNELI 272
Query: 374 KVDSFQVLEKYIE---DLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 430
+ + ++K I+ ++ L +SA L DQ HDI++ L K I + E + +
Sbjct: 273 DIMKSKNVQKIIQAVNEIELNGWSAQILLDQLHDILILDDRLDSLAKNKIAKFFFESDRK 332
Query: 431 LQDGASEYIQILDL 444
L +G E+IQ+L++
Sbjct: 333 LNNGTDEHIQLLNI 346
>gi|326475381|gb|EGD99390.1| DNA replication factor C subunit Rfc2 [Trichophyton tonsurans CBS
112818]
Length = 396
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 143/337 (42%), Positives = 205/337 (60%), Gaps = 42/337 (12%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGAD----------LPHFLF 71
V+ + ++ + PWVEKYRPKT+DDV Q +SVL++ L ++ LPH LF
Sbjct: 22 VTNNQESDQQAQPWVEKYRPKTLDDVTAQDHTISVLQRNLHASNVKLQYCLFKPLPHMLF 81
Query: 72 YGPPGTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ 130
YG PGTGKTST++A LFG + R R+LELNASD+RGI ++R+K+K FA+ S
Sbjct: 82 YGSPGTGKTSTILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPT 141
Query: 131 DGK-----PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLT 185
D PCPPFKI+ILDEADSMTH AQ+ALRRTMEK ++ TRFCL+CNYV+ II P+
Sbjct: 142 DPAYRSQYPCPPFKIIILDEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIIDPVA 201
Query: 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245
SRCSKFRFK L + +RL I E + + +ETL+ S GD+R+AIT +QS ARL
Sbjct: 202 SRCSKFRFKVLDGSAAQSRLIEIARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSSARL 261
Query: 246 -KGGEG------------------IVNEDVLEVTGVIPKPWIEKLL-------KVDSFQV 279
+ G G I + EV+G++P+ +++++ + ++
Sbjct: 262 ARYGSGKKKDSSDKEMELDDVKPKITVRSIEEVSGLVPETVMQRVVAALRPSKRASKYEE 321
Query: 280 LEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ + DL+ + +SA+Q+ Q + V+ S++D QK
Sbjct: 322 ISSLVADLVADGWSASQVLSQTYKAVLQDESIADVQK 358
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 78/149 (52%), Gaps = 26/149 (17%)
Query: 322 LETLVETSGGDMRRAITCLQSCARL-KGGEG------------------IVNEDVLEVTG 362
+ETL+ S GD+R+AIT +QS ARL + G G I + EV+G
Sbjct: 237 VETLLRCSDGDLRKAITFMQSSARLARYGSGKKKDSSDKEMELDDVKPKITVRSIEEVSG 296
Query: 363 VIPNPWIEKLL-------KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDK 415
++P +++++ + ++ + + DL+ + +SA+Q+ Q + V+ S++D
Sbjct: 297 LVPETVMQRVVAALRPSKRASKYEEISSLVADLVADGWSASQVLSQTYKAVLQDESIADV 356
Query: 416 QKALILEKLAECNARLQDGASEYIQILDL 444
QK IL+ +E + RL DGA E++ LD
Sbjct: 357 QKNQILKVCSEFDKRLVDGADEHLSTLDF 385
>gi|401425841|ref|XP_003877405.1| putative replication factor C, subunit 2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493650|emb|CBZ28940.1| putative replication factor C, subunit 2 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 354
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 139/316 (43%), Positives = 195/316 (61%), Gaps = 14/316 (4%)
Query: 15 PSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLS-GADLPHFLFYG 73
P+ + + T PWVEKYRP+T+ +V Q E V L+ CL GA++PHFLF+G
Sbjct: 7 PAQKRAKTEGASDTAGAAAPWVEKYRPRTLAEVEAQDEAVGALRACLKEGANMPHFLFHG 66
Query: 74 PPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ-- 130
PPGTGKT++++A H+LFG D R R+ ELNASDDRGI V+R+KVK FAQ S
Sbjct: 67 PPGTGKTTSILAVAHELFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGAVSSSGSSV 126
Query: 131 ---DGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLT 185
DGK P PPFK++ILDEAD++ AQAALRR ME + TRFC++CNYVS II P+
Sbjct: 127 TQSDGKVYPVPPFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIA 186
Query: 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245
SRC+K+RFKPL ++ + R++Y+ + E + +L L SGGD+R AI LQS +
Sbjct: 187 SRCAKYRFKPLVKSALYHRIEYVAQAEGITLSPASLHALDTVSGGDLRLAIMHLQSAQKA 246
Query: 246 KGGEGIVNEDVLEVTGVIPKPWIEKLLKVDSFQVLEKYIE---DLILEAYSATQLFDQF- 301
K G+ + ED + V+G +P +++ L LE+ I+ L+ E ++A Q+ Q
Sbjct: 247 K-GDDLSKEDFVSVSGSVPADVMQRYLSALFSHRLEEVIQASRRLVAEGFAAAQVLLQIQ 305
Query: 302 HDIVMLASSLSDKQKA 317
H +V L+ Q+
Sbjct: 306 HYLVSAGCPLNSAQRG 321
Score = 75.1 bits (183), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 5/135 (3%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQV 380
+L L SGGD+R AI LQS + KG + + ED + V+G +P +++ L
Sbjct: 221 SLHALDTVSGGDLRLAIMHLQSAQKAKGDD-LSKEDFVSVSGSVPADVMQRYLSALFSHR 279
Query: 381 LEKYIE---DLILEAYSATQLFDQF-HDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
LE+ I+ L+ E ++A Q+ Q H +V + L+ Q+ I+ KL + RL DG
Sbjct: 280 LEEVIQASRRLVAEGFAAAQVLLQIQHYLVSAGCPLNSAQRGKIMLKLCQTERRLADGGD 339
Query: 437 EYIQILDLGSIVIKA 451
+Y+Q+LD+GS V A
Sbjct: 340 DYLQLLDIGSAVCSA 354
>gi|452825574|gb|EME32570.1| replication factor C [Galdieria sulphuraria]
Length = 354
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 136/298 (45%), Positives = 190/298 (63%), Gaps = 12/298 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP I D++ QQE +L CL+ +LPH LFYGPPGTGKTS +A C +LF
Sbjct: 9 LPWVEKYRPNKIKDLVYQQEAAQLLHNCLTSGNLPHCLFYGPPGTGKTSAALAFCKELFP 68
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y++R+LELNASD+RGI+V+R+K+K FAQ + S +G PCPPFKI+ILDEAD++T
Sbjct: 69 PEIYKDRVLELNASDERGIKVVREKIKRFAQGSVSSAQFEGFPCPPFKIIILDEADAITP 128
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME+ +K TRF L+CNYV+ +I PL SRC+KFRF+ L + RL+YI +Q
Sbjct: 129 DAQTALRRTMEQFSKITRFFLLCNYVTRVIDPLASRCAKFRFRSLPMQLQVDRLRYIVDQ 188
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL 271
E +M L+TL GD+RRAI L+S L G I +E + VT +P I ++
Sbjct: 189 EGIMVSDDILQTLTSCCNGDLRRAIMTLESAYCLARGSNITDEIINSVTWRVPDHVISQI 248
Query: 272 ----LKVDS-------FQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKAL 318
LK+ S F L + I Y +++ Q + ++ + L+ QK++
Sbjct: 249 DSNCLKICSSGENTLQFSELRNMAIEFINNGYPVSEIIYQLCEALIPVNHLNKLQKSV 306
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL----LKVDS 377
L+TL GD+RRAI L+S L G I +E + VT +P+ I ++ LK+ S
Sbjct: 198 LQTLTSCCNGDLRRAIMTLESAYCLARGSNITDEIINSVTWRVPDHVISQIDSNCLKICS 257
Query: 378 -------FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 430
F L + I Y +++ Q + ++ + L+ QK++I+ K A+
Sbjct: 258 SGENTLQFSELRNMAIEFINNGYPVSEIIYQLCEALIPVNHLNKLQKSVIMIKFAQAEKM 317
Query: 431 LQDGASEYIQILDLGSIVIKA 451
L DG+ E + ++D+ ++ +
Sbjct: 318 LIDGSDELLVLMDIFGVLFQV 338
>gi|72390425|ref|XP_845507.1| replication factor C, subunit 2 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62360360|gb|AAX80776.1| replication factor C, subunit 2, putative [Trypanosoma brucei]
gi|70802042|gb|AAZ11948.1| replication factor C, subunit 2, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261328911|emb|CBH11889.1| replication factor C, subunit 2, putative [Trypanosoma brucei
gambiense DAL972]
Length = 347
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 136/296 (45%), Positives = 189/296 (63%), Gaps = 13/296 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCL-SGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
PW+EKYRPK++D+V Q+EVV L+ L GA +PHFLF+GPPGTGKT+ ++A H+LFG
Sbjct: 20 PWIEKYRPKSLDEVKSQEEVVQALRSTLRQGASMPHFLFHGPPGTGKTTAILAVAHELFG 79
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ----DGK--PCPPFKIVILDE 145
D + R+ ELNASDDRGIQVIR+KVK+FAQ Q DGK P PPFK++ILDE
Sbjct: 80 PDYIKSRVRELNASDDRGIQVIREKVKSFAQTAVGNVVQKVQSDGKIYPVPPFKVIILDE 139
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD++ AQAALRR ME + TRFC++CNYV+ II P+ SRC+K+RFKPL + + R+
Sbjct: 140 ADALLPDAQAALRRMMEDFSDVTRFCILCNYVTRIIDPIASRCAKYRFKPLIKEALYERI 199
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPK 265
+ +E++ +++ L SGGD+R AI LQ R G + + ED +EV+G +P
Sbjct: 200 SEVASRENIQISRSSIDALDHVSGGDLRLAIMYLQYAQRANGND-LQKEDFVEVSGSVPA 258
Query: 266 PWIEKLLK---VDSFQVLEKYIEDLILEAYSATQLFDQFHD-IVMLASSLSDKQKA 317
++ L + SF + + L+ + Y A Q+ Q D IV A L+ Q+
Sbjct: 259 SMMQTYLAALMMKSFDEVRSVTKRLVQQGYPACQILAQLQDYIVSAACPLNSAQRG 314
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 5/132 (3%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDS 377
+++ L SGGD+R AI LQ R G + + ED +EV+G +P ++ L + S
Sbjct: 214 SIDALDHVSGGDLRLAIMYLQYAQRANGND-LQKEDFVEVSGSVPASMMQTYLAALMMKS 272
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNARLQDGAS 436
F + + L+ + Y A Q+ Q D ++SA+ L+ Q+ I KL + RL DG
Sbjct: 273 FDEVRSVTKRLVQQGYPACQILAQLQDYIVSAACPLNSAQRGSIALKLCDIEKRLSDGCD 332
Query: 437 EYIQILDLGSIV 448
+++Q+L+LGS +
Sbjct: 333 DFVQLLELGSFI 344
>gi|340054249|emb|CCC48545.1| putative replication factor C, subunit 2 [Trypanosoma vivax Y486]
Length = 347
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 140/303 (46%), Positives = 188/303 (62%), Gaps = 24/303 (7%)
Query: 15 PSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCL-SGADLPHFLFYG 73
P + K V S P PWVEKYRPK++D+V Q+EVV L+ L GA +PHFLF+G
Sbjct: 5 PPTKKARVEPS----MDPRPWVEKYRPKSLDEVKSQEEVVQALRSTLRQGASMPHFLFHG 60
Query: 74 PPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ-- 130
PPGTGKT+ ++A +LFG D R R+ ELNASDDRGIQVIR+KVK FAQ G Q
Sbjct: 61 PPGTGKTTAILAVAQELFGPDYIRSRVRELNASDDRGIQVIREKVKAFAQSAVGGVGQKV 120
Query: 131 --DGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186
DG P PPFK++ILDEAD++ AQAALRR ME + TRFC++CNYVS II P+ S
Sbjct: 121 QSDGNVYPVPPFKLIILDEADALLPDAQAALRRMMEDYSDVTRFCILCNYVSRIIDPIAS 180
Query: 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246
RC+K+RFKPL + + R+ + +E + +++ L TSGGDMR AI LQ A+
Sbjct: 181 RCAKYRFKPLVRHALRERILEVATREGLRMSDASIDALDRTSGGDMRLAIMYLQH-AQKA 239
Query: 247 GGEGIVNEDVLEVTGVIPKPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFD 299
G+ + NED +EV+G +P ++ + D F V ++ I+ + Y A+Q+
Sbjct: 240 HGDDLTNEDFVEVSGKVPAGLLDNYVAALLSKKFDDVFMVTKQIIQ----QGYPASQVLA 295
Query: 300 QFH 302
Q
Sbjct: 296 QLQ 298
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 75/135 (55%), Gaps = 11/135 (8%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP----NPWIEKLL--K 374
+++ L TSGGDMR AI LQ A+ G+ + NED +EV+G +P + ++ LL K
Sbjct: 214 SIDALDRTSGGDMRLAIMYLQH-AQKAHGDDLTNEDFVEVSGKVPAGLLDNYVAALLSKK 272
Query: 375 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS-ASSLSDKQKALILEKLAECNARLQD 433
D ++ K I I + Y A+Q+ Q +S A L+ Q+ I K+ + R+ D
Sbjct: 273 FDDVFMVTKQI---IQQGYPASQVLAQLQQYFVSPACPLNSAQRGAISLKICDVEKRIMD 329
Query: 434 GASEYIQILDLGSIV 448
G + +Q+LDLG+++
Sbjct: 330 GGDDLVQLLDLGTVI 344
>gi|396471841|ref|XP_003838965.1| hypothetical protein LEMA_P026380.1 [Leptosphaeria maculans JN3]
gi|312215534|emb|CBX95486.1| hypothetical protein LEMA_P026380.1 [Leptosphaeria maculans JN3]
Length = 434
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 147/373 (39%), Positives = 198/373 (53%), Gaps = 80/373 (21%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
TS + N+ PWVEKYRPKT+ +V Q + +L + L ++LPH LFYGPPGTGKTST+
Sbjct: 24 TSKQESNRLQPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTI 83
Query: 84 IAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQ---------------TASG 127
+A QL+G D+ + R+LELNASD+RGI ++R KVK FA+Q A+G
Sbjct: 84 LALAKQLYGPDLLKSRVLELNASDERGISIVRQKVKDFARQQLSLAPSYSVMVEDKAAAG 143
Query: 128 FNQDGK---------------PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172
+D PCPPFKI++LDEADSMT AQ+ALRRTME ++ TRFCL
Sbjct: 144 RGEDEAAGTGEKKMARYRDVYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRVTRFCL 203
Query: 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDM 232
+CNYV+ II PL SRCSKFRFK L + + R+ I E V D E LV + GD+
Sbjct: 204 VCNYVTRIIDPLASRCSKFRFKSLDQGNAVRRVADIARLEGVALDPGVAEELVRVAEGDL 263
Query: 233 RRAITCLQSCARLKG----------------------------------------GEGIV 252
R+AIT LQS ARL G G +
Sbjct: 264 RKAITFLQSGARLVGAVQANVAAGTGRKKRVVEEGEGEGDEMDIDAPAAAAPSTAGTTVS 323
Query: 253 NEDVLEVTGVIPKPWIEKLL---------KVDSFQVLEKYIEDLILEAYSATQLFDQFHD 303
+ + E+ GVIP + L+ K + + K +ED++ E +SATQ Q ++
Sbjct: 324 LQAIAEIAGVIPPETLAGLMDALFPKSKAKAIRYNEIAKVVEDMVAEGWSATQTVSQLYE 383
Query: 304 IVMLASSLSDKQK 316
+M + D +K
Sbjct: 384 KIMYDERVEDVKK 396
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 49/172 (28%)
Query: 323 ETLVETSGGDMRRAITCLQSCARLKG---------------------------------- 348
E LV + GD+R+AIT LQS ARL G
Sbjct: 253 EELVRVAEGDLRKAITFLQSGARLVGAVQANVAAGTGRKKRVVEEGEGEGDEMDIDAPAA 312
Query: 349 ------GEGIVNEDVLEVTGVIPNPWIEKLL---------KVDSFQVLEKYIEDLILEAY 393
G + + + E+ GVIP + L+ K + + K +ED++ E +
Sbjct: 313 AAPSTAGTTVSLQAIAEIAGVIPPETLAGLMDALFPKSKAKAIRYNEIAKVVEDMVAEGW 372
Query: 394 SATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 445
SATQ Q ++ +M + D +K + +E + RL DG E++ +LDLG
Sbjct: 373 SATQTVSQLYEKIMYDERVEDVKKVRLAGVFSETDKRLVDGGDEHLAVLDLG 424
>gi|146093994|ref|XP_001467108.1| putative replication factor C, subunit 2 [Leishmania infantum
JPCM5]
gi|134071472|emb|CAM70161.1| putative replication factor C, subunit 2 [Leishmania infantum
JPCM5]
Length = 354
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 139/316 (43%), Positives = 195/316 (61%), Gaps = 14/316 (4%)
Query: 15 PSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLS-GADLPHFLFYG 73
P+ + + T PWVEKYRP+T+ +V Q E V L+ CL GA++PHFLF+G
Sbjct: 7 PAQKRAKTEGASDTAGAAAPWVEKYRPRTLAEVEAQDEAVGALRACLKEGANMPHFLFHG 66
Query: 74 PPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ-- 130
PPGTGKT++++A H+LFG D R R+ ELNASDDRGI V+R+KVK FAQ S
Sbjct: 67 PPGTGKTTSILAVAHELFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGAVSSSGSSV 126
Query: 131 ---DGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLT 185
DGK P PPFK++ILDEAD++ AQAALRR ME + TRFC++CNYVS II P+
Sbjct: 127 TQSDGKVYPVPPFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIA 186
Query: 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245
SRC+K+RFKPL ++ + R++Y+ + E + +L L SGGD+R AI LQS +
Sbjct: 187 SRCAKYRFKPLVKSALYHRIEYVAQAEGITLSPASLHALDTVSGGDLRLAIMHLQSAQKA 246
Query: 246 KGGEGIVNEDVLEVTGVIPKPWIEKLLKVDSFQVLEKYIE---DLILEAYSATQLFDQF- 301
K G+ + ED + V+G +P +++ L LE+ I+ L+ E ++A Q+ Q
Sbjct: 247 K-GDDLSKEDFVSVSGSVPADVMQRYLSALFSHRLEEVIQASRRLVAEGFAAAQVLLQMQ 305
Query: 302 HDIVMLASSLSDKQKA 317
H +V L+ Q+
Sbjct: 306 HYLVSAECPLNSAQRG 321
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 5/135 (3%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQV 380
+L L SGGD+R AI LQS + KG + + ED + V+G +P +++ L
Sbjct: 221 SLHALDTVSGGDLRLAIMHLQSAQKAKGDD-LSKEDFVSVSGSVPADVMQRYLSALFSHR 279
Query: 381 LEKYIE---DLILEAYSATQLFDQF-HDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
LE+ I+ L+ E ++A Q+ Q H +V + L+ Q+ I+ KL + RL DG
Sbjct: 280 LEEVIQASRRLVAEGFAAAQVLLQMQHYLVSAECPLNSAQRGKIMLKLCQTERRLADGGD 339
Query: 437 EYIQILDLGSIVIKA 451
+Y+Q+LD+GS V A
Sbjct: 340 DYLQLLDIGSAVCSA 354
>gi|254568858|ref|XP_002491539.1| Subunit of heteropentameric Replication factor C (RF-C)
[Komagataella pastoris GS115]
gi|238031336|emb|CAY69259.1| Subunit of heteropentameric Replication factor C (RF-C)
[Komagataella pastoris GS115]
gi|328351952|emb|CCA38351.1| Replication factor C subunit 2 [Komagataella pastoris CBS 7435]
Length = 324
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 130/291 (44%), Positives = 191/291 (65%), Gaps = 13/291 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +D+V Q V+ VL L A++PH LFYGPPGTGKTST++A +LFG
Sbjct: 4 PWVEKYRPKKLDEVSAQSNVIRVLSNQLKSANMPHLLFYGPPGTGKTSTILAMARELFGP 63
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK---PCPPFKIVILDEADSM 149
+ + R+LELNASD+RGI ++RDKVK FA+ + + + K PCPP+K++ILDEADSM
Sbjct: 64 QLMKSRVLELNASDERGISIVRDKVKNFARLSVTNPTPEDKENYPCPPYKLIILDEADSM 123
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRR ME + TRFC+ICNY++ II P+TSRCSKFRF PL L L+ I
Sbjct: 124 TFDAQSALRRIMENYSHITRFCIICNYITRIIDPITSRCSKFRFSPLNSANSLATLKMIS 183
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIE 269
+ E + D +L +++ S GD+R++I LQ+ +L G + I N + G+IP+ ++
Sbjct: 184 QSEELDIDDDSLTQILDISNGDLRKSINFLQTGHKLFGEDSIEN-----IAGLIPQNLVQ 238
Query: 270 KLLKVDSFQVLEK---YIEDLILEAYSATQLFDQFHDIVMLAS-SLSDKQK 316
L++ + L K ++ L+L++Y++ + H ++L + L+ +QK
Sbjct: 239 SLIETLQSKNLNKIYEFLYMLVLKSYNSATILTSLHSCLLLKNIYLNSEQK 289
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 72/128 (56%), Gaps = 9/128 (7%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQV 380
+L +++ S GD+R++I LQ+ +L G + I N + G+IP ++ L++ +
Sbjct: 194 SLTQILDISNGDLRKSINFLQTGHKLFGEDSIEN-----IAGLIPQNLVQSLIETLQSKN 248
Query: 381 LEK---YIEDLILEAYSATQLFDQFHD-IVMSASSLSDKQKALILEKLAECNARLQDGAS 436
L K ++ L+L++Y++ + H +++ L+ +QK + L E +++L G+
Sbjct: 249 LNKIYEFLYMLVLKSYNSATILTSLHSCLLLKNIYLNSEQKIEVSRILYETDSKLSSGSD 308
Query: 437 EYIQILDL 444
E+IQ+L+L
Sbjct: 309 EFIQMLNL 316
>gi|157872662|ref|XP_001684866.1| putative replication factor C, subunit 2 [Leishmania major strain
Friedlin]
gi|68127936|emb|CAJ06571.1| putative replication factor C, subunit 2 [Leishmania major strain
Friedlin]
Length = 354
Score = 264 bits (674), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 139/316 (43%), Positives = 195/316 (61%), Gaps = 14/316 (4%)
Query: 15 PSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCL-SGADLPHFLFYG 73
P+ + + T PWVEKYRP+T+ +V Q E V L+ CL GA++PHFLF+G
Sbjct: 7 PAQKRAKTEGASDTAGAAAPWVEKYRPRTLAEVEAQDEAVGALRACLKEGANMPHFLFHG 66
Query: 74 PPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ-- 130
PPGTGKT++++A H+LFG D R R+ ELNASDDRGI V+R+KVK FAQ S
Sbjct: 67 PPGTGKTTSILAVAHELFGPDYIRSRVRELNASDDRGISVVREKVKIFAQGAVSSSGSSV 126
Query: 131 ---DGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLT 185
DGK P PPFK++ILDEAD++ AQAALRR ME + TRFC++CNYVS II P+
Sbjct: 127 TQSDGKVYPVPPFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIA 186
Query: 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245
SRC+K+RFKPL ++ + R++Y+ + E + +L L SGGD+R AI LQS +
Sbjct: 187 SRCAKYRFKPLVKSALYHRIEYVAQAEGITLSPASLHALDTVSGGDLRLAIMHLQSAQKA 246
Query: 246 KGGEGIVNEDVLEVTGVIPKPWIEKLLKVDSFQVLEKYIE---DLILEAYSATQLFDQF- 301
K G+ + ED + V+G +P +++ L LE+ I+ L+ E ++A Q+ Q
Sbjct: 247 K-GDDLSKEDFVSVSGSVPADVMQQYLSALFSHRLEEVIQASRRLVAEGFAAAQVLLQMQ 305
Query: 302 HDIVMLASSLSDKQKA 317
H +V L+ Q+
Sbjct: 306 HYLVSAECPLNSAQRG 321
Score = 73.9 bits (180), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 5/135 (3%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQV 380
+L L SGGD+R AI LQS + KG + + ED + V+G +P +++ L
Sbjct: 221 SLHALDTVSGGDLRLAIMHLQSAQKAKGDD-LSKEDFVSVSGSVPADVMQQYLSALFSHR 279
Query: 381 LEKYIE---DLILEAYSATQLFDQF-HDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
LE+ I+ L+ E ++A Q+ Q H +V + L+ Q+ I+ KL + RL DG
Sbjct: 280 LEEVIQASRRLVAEGFAAAQVLLQMQHYLVSAECPLNSAQRGKIMLKLCQTERRLADGGD 339
Query: 437 EYIQILDLGSIVIKA 451
+Y+Q+LD+GS V A
Sbjct: 340 DYLQLLDIGSAVCSA 354
>gi|398019618|ref|XP_003862973.1| replication factor C, subunit 2, putative [Leishmania donovani]
gi|322501204|emb|CBZ36283.1| replication factor C, subunit 2, putative [Leishmania donovani]
Length = 354
Score = 264 bits (674), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 139/316 (43%), Positives = 195/316 (61%), Gaps = 14/316 (4%)
Query: 15 PSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLS-GADLPHFLFYG 73
P+ + + T PWVEKYRP+T+ +V Q E V L+ CL GA++PHFLF+G
Sbjct: 7 PAQKRAKTEGAPDTAGAAAPWVEKYRPRTLAEVEAQDEAVGALRACLKEGANMPHFLFHG 66
Query: 74 PPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ-- 130
PPGTGKT++++A H+LFG D R R+ ELNASDDRGI V+R+KVK FAQ S
Sbjct: 67 PPGTGKTTSILAVAHELFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGAVSSSGSSV 126
Query: 131 ---DGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLT 185
DGK P PPFK++ILDEAD++ AQAALRR ME + TRFC++CNYVS II P+
Sbjct: 127 TQSDGKVYPVPPFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIA 186
Query: 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245
SRC+K+RFKPL ++ + R++Y+ + E + +L L SGGD+R AI LQS +
Sbjct: 187 SRCAKYRFKPLVKSALYHRIEYVAQAEGITLSPASLHALDTVSGGDLRLAIMHLQSAQKA 246
Query: 246 KGGEGIVNEDVLEVTGVIPKPWIEKLLKVDSFQVLEKYIE---DLILEAYSATQLFDQF- 301
K G+ + ED + V+G +P +++ L LE+ I+ L+ E ++A Q+ Q
Sbjct: 247 K-GDDLSKEDFVSVSGSVPADVMQRYLSALFSHRLEEVIQASRRLVAEGFAAAQVLLQMQ 305
Query: 302 HDIVMLASSLSDKQKA 317
H +V L+ Q+
Sbjct: 306 HYLVSAECPLNSAQRG 321
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 5/135 (3%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQV 380
+L L SGGD+R AI LQS + KG + + ED + V+G +P +++ L
Sbjct: 221 SLHALDTVSGGDLRLAIMHLQSAQKAKGDD-LSKEDFVSVSGSVPADVMQRYLSALFSHR 279
Query: 381 LEKYIE---DLILEAYSATQLFDQF-HDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
LE+ I+ L+ E ++A Q+ Q H +V + L+ Q+ I+ KL + RL DG
Sbjct: 280 LEEVIQASRRLVAEGFAAAQVLLQMQHYLVSAECPLNSAQRGKIMLKLCQTERRLADGGD 339
Query: 437 EYIQILDLGSIVIKA 451
+Y+Q+LD+GS V A
Sbjct: 340 DYLQLLDIGSAVCSA 354
>gi|255944955|ref|XP_002563245.1| Pc20g07200 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587980|emb|CAP86049.1| Pc20g07200 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 388
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 141/314 (44%), Positives = 189/314 (60%), Gaps = 37/314 (11%)
Query: 40 RPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD-MYRER 98
RPK++DDV Q +VL++ L ++LPH LFYGPPGTGKTST++A LFG +YR R
Sbjct: 37 RPKSLDDVAAQDHTTNVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPALYRSR 96
Query: 99 ILELNASDDRGIQVIRDKVKTFAQQTAS---GFNQDGK---PCPPFKIVILDEADSMTHA 152
ILELNASD+RGI ++RDKVK FA+ S G + + PCPPFKI+ILDEADSMT
Sbjct: 97 ILELNASDERGIGIVRDKVKNFARAQLSQPTGLDAAYRAQYPCPPFKIIILDEADSMTQD 156
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRRTME ++ TRFCL+CNYV+ II+PL SRCSKFRFK L + R+ I EQE
Sbjct: 157 AQSALRRTMETYSRITRFCLVCNYVTRIIEPLASRCSKFRFKMLDNSAAGERIGNIAEQE 216
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG---------------------- 250
+ + ++TL+ GD+RRAIT LQS ARL G
Sbjct: 217 GLQLEDGVIDTLIRCGDGDLRRAITYLQSAARLVGATKPPAAKDADDDDTEMTDVGSKSS 276
Query: 251 -IVNEDVLEVTGVIPKPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFH 302
I + E+ GV+P ++ L++ ++ + I DL+ + +SATQL Q +
Sbjct: 277 VITVRSIEEIAGVLPDNILDSLVEAMQPKSGGSVYEAVAGVITDLVADGWSATQLVGQLY 336
Query: 303 DIVMLASSLSDKQK 316
V+ ++ D QK
Sbjct: 337 RRVVSNEAIPDIQK 350
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 30/153 (19%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEG-----------------------IVNEDVL 358
++TL+ GD+RRAIT LQS ARL G I +
Sbjct: 225 IDTLIRCGDGDLRRAITYLQSAARLVGATKPPAAKDADDDDTEMTDVGSKSSVITVRSIE 284
Query: 359 EVTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASS 411
E+ GV+P+ ++ L++ ++ + I DL+ + +SATQL Q + V+S +
Sbjct: 285 EIAGVLPDNILDSLVEAMQPKSGGSVYEAVAGVITDLVADGWSATQLVGQLYRRVVSNEA 344
Query: 412 LSDKQKALILEKLAECNARLQDGASEYIQILDL 444
+ D QK I+ +E + RL DG+ E++ +LDL
Sbjct: 345 IPDIQKNKIVMIFSEMDKRLVDGSDEHLSMLDL 377
>gi|407851932|gb|EKG05623.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
Length = 347
Score = 260 bits (665), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 140/304 (46%), Positives = 190/304 (62%), Gaps = 16/304 (5%)
Query: 20 TSVSTSGKTRNKP--VPWVEKYRPKTIDDVIEQQEVVSVLKKCL-SGADLPHFLFYGPPG 76
TSVS + KP PWVEKYRP T+ +V Q+E V L+ L S A +PHFLF+GPPG
Sbjct: 4 TSVSKKPRIEPKPNATPWVEKYRPMTLSEVKSQEEAVCALRASLQSSASMPHFLFHGPPG 63
Query: 77 TGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG-----FNQ 130
TGKT+ ++A +LFG D R+ E+NASDDRGIQVIR+KVK FAQ TA G
Sbjct: 64 TGKTTAILAVARELFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQ-TAVGNVGHKVQS 122
Query: 131 DGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRC 188
DG+ P P FK++ILDEAD++ AQAALRR ME + TRFC++CNYVS II P+ SRC
Sbjct: 123 DGQVYPVPQFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRC 182
Query: 189 SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG 248
+K+RFKPL T+ R++ I + E + +LE L SGGD+R AI LQ + G
Sbjct: 183 AKYRFKPLVRETLYDRIREIAKMEEITVSDASLEALDRVSGGDLRSAIMYLQYAQKAHGS 242
Query: 249 EGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305
+ + E+ LEV+G +P +EK LK F + ++++ + + A+QL Q H +
Sbjct: 243 D-LTKENFLEVSGSVPMELLEKYLKALVSKEFDGMYSLTKEIVGQGFPASQLLSQLHQYI 301
Query: 306 MLAS 309
+ +S
Sbjct: 302 IGSS 305
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 12/157 (7%)
Query: 297 LFDQFHDIVMLAS-SLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 355
L+D+ +I + ++SD +LE L SGGD+R AI LQ + G + + E
Sbjct: 195 LYDRIREIAKMEEITVSDA------SLEALDRVSGGDLRSAIMYLQYAQKAHGSD-LTKE 247
Query: 356 DVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHD-IVMSASS 411
+ LEV+G +P +EK LK F + ++++ + + A+QL Q H I+ S+
Sbjct: 248 NFLEVSGSVPMELLEKYLKALVSKEFDGMYSLTKEIVGQGFPASQLLSQLHQYIIGSSCP 307
Query: 412 LSDKQKALILEKLAECNARLQDGASEYIQILDLGSIV 448
L+ ++ I KL + RL DG E++Q+LDLG+ +
Sbjct: 308 LNSLVRSRIALKLCDVERRLSDGGDEFLQLLDLGTTI 344
>gi|451849989|gb|EMD63292.1| hypothetical protein COCSADRAFT_38154 [Cochliobolus sativus ND90Pr]
Length = 416
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 144/362 (39%), Positives = 200/362 (55%), Gaps = 63/362 (17%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
T+ + N+ PWVEKYRPKT+ +V Q + VL + + ++LPH LFYGPPGTGKTST+
Sbjct: 24 TTKQEPNRLQPWVEKYRPKTLSEVTAQDNTIQVLSRTMQSSNLPHMLFYGPPGTGKTSTI 83
Query: 84 IAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQ---TASGFN---------- 129
+A +L+G ++ + R+LELNASD+RGI ++R KVK FA+Q A +N
Sbjct: 84 LALAKELYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMVEDKSGTG 143
Query: 130 -------QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQ 182
+D PCPPFKI++LDEADSMT AQ+ALRRTME ++ TRFCL+CNYV+ II
Sbjct: 144 EGGMVRYRDKYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIID 203
Query: 183 PLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
PL SRCSKFRFK L + + R+ I E+V D E LV + GD+R+AIT LQS
Sbjct: 204 PLASRCSKFRFKSLDQGNAVKRVSDIAALENVRLDDGVAEELVRVADGDLRKAITFLQSA 263
Query: 243 ARL------KGGEG-------IVNED-------------------VLEVTGVIPKPWIEK 270
ARL +GG V ED + E+ GV+P +
Sbjct: 264 ARLVGALQSQGGSNKKGKKRTAVPEDDEMDIDSSNTATPSVSLPTIAEIAGVLPPDTLST 323
Query: 271 LL----------KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFK 320
K + + K +E+++ E +SA Q Q ++ +M + D +K
Sbjct: 324 FTSALFPKSSAQKSIRYNEIAKVVENMVAEGWSAAQTVGQLYEQIMFDERVEDVKKVRLA 383
Query: 321 AL 322
A+
Sbjct: 384 AV 385
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 42/165 (25%)
Query: 323 ETLVETSGGDMRRAITCLQSCARL------KGGEG-------IVNED------------- 356
E LV + GD+R+AIT LQS ARL +GG V ED
Sbjct: 243 EELVRVADGDLRKAITFLQSAARLVGALQSQGGSNKKGKKRTAVPEDDEMDIDSSNTATP 302
Query: 357 ------VLEVTGVIP----NPWIEKLLKVDS------FQVLEKYIEDLILEAYSATQLFD 400
+ E+ GV+P + + L S + + K +E+++ E +SA Q
Sbjct: 303 SVSLPTIAEIAGVLPPDTLSTFTSALFPKSSAQKSIRYNEIAKVVENMVAEGWSAAQTVG 362
Query: 401 QFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 445
Q ++ +M + D +K + +E + RL DG+ E++ +LDLG
Sbjct: 363 QLYEQIMFDERVEDVKKVRLAAVFSETDKRLVDGSDEHLAVLDLG 407
>gi|189203731|ref|XP_001938201.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985300|gb|EDU50788.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 417
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 146/381 (38%), Positives = 206/381 (54%), Gaps = 67/381 (17%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
T+ + N+ PWVEKYRPKT+ +V Q + +L + + ++LPH LFYGPPGTGKTST+
Sbjct: 24 TTKQEPNRLQPWVEKYRPKTLSEVTAQDNTIQILSRTMQSSNLPHMLFYGPPGTGKTSTI 83
Query: 84 IAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQ---TASGFN---------- 129
+A +L+G ++ + R+LELNASD+RGI ++R KVK FA+Q A +N
Sbjct: 84 LALAKELYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPNYNIMVEDKSSGE 143
Query: 130 ------QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183
+D PCPPFKI++LDEADSMT AQ+ALRRTME ++ TRFCL+CNYV+ II P
Sbjct: 144 TKTVRYRDKYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDP 203
Query: 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
L SRCSKFRFK L + + R+ I + E+V + E LV + GD+R+AIT LQS A
Sbjct: 204 LASRCSKFRFKSLDQGNAIKRVSDIAKLENVSLEDGVAEELVRVADGDLRKAITFLQSAA 263
Query: 244 RLKGGEGIVN----------------ED------------------VLEVTGVIPKPWIE 269
RL G VN ED + E+ GV+P +
Sbjct: 264 RLVGAVQAVNGGGAGASKKGKKKVVEEDEMDVDAPPTSTPAISLPIIAEIAGVLPPATLS 323
Query: 270 KL----------LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALF 319
K + + K +E++I E +SA Q Q ++ +M + D +K
Sbjct: 324 TFSDSLFPKSAAAKQIRYNEIAKIVENMIAEGWSAQQTVGQLYEQIMFDERVEDVKKVRL 383
Query: 320 KALETLVE---TSGGDMRRAI 337
+ + + GGD A+
Sbjct: 384 AGVFSETDKRLVDGGDEHLAV 404
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 44/167 (26%)
Query: 323 ETLVETSGGDMRRAITCLQSCARLKGGEGIVN----------------ED---------- 356
E LV + GD+R+AIT LQS ARL G VN ED
Sbjct: 242 EELVRVADGDLRKAITFLQSAARLVGAVQAVNGGGAGASKKGKKKVVEEDEMDVDAPPTS 301
Query: 357 --------VLEVTGVIPNPWIEKL----------LKVDSFQVLEKYIEDLILEAYSATQL 398
+ E+ GV+P + K + + K +E++I E +SA Q
Sbjct: 302 TPAISLPIIAEIAGVLPPATLSTFSDSLFPKSAAAKQIRYNEIAKIVENMIAEGWSAQQT 361
Query: 399 FDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 445
Q ++ +M + D +K + +E + RL DG E++ +LDLG
Sbjct: 362 VGQLYEQIMFDERVEDVKKVRLAGVFSETDKRLVDGGDEHLAVLDLG 408
>gi|209877196|ref|XP_002140040.1| replication factor C, subunit 4 [Cryptosporidium muris RN66]
gi|209555646|gb|EEA05691.1| replication factor C, subunit 4, putative [Cryptosporidium muris
RN66]
Length = 335
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 131/291 (45%), Positives = 186/291 (63%), Gaps = 8/291 (2%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
WVEKYRP+ I D+ Q EVV +LK L ++PH LFYGPPGTGKTS ++A C +LFG D
Sbjct: 10 WVEKYRPRQIADIYHQTEVVKMLKNVLEFGNMPHLLFYGPPGTGKTSAILALCRELFGND 69
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD---GKPCPPFKIVILDEADSMT 150
+R R LELNASD+RGI V+R+K+KT+ +Q + G+ PP+K+VILDEA+ MT
Sbjct: 70 EFRNRTLELNASDERGINVVREKIKTWTRQVVYSNKINPITGRKIPPWKVVILDEAEMMT 129
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ+ALRR +E K+TRF +ICNY++ II+PL SRC+KFRF+P++ RL +IC+
Sbjct: 130 SDAQSALRRIIETSAKNTRFVIICNYINKIIEPLASRCAKFRFQPISFKAQRERLNFICQ 189
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE-DVLEVTGVIPKPWIE 269
QE+++C+ + + LV+ S GD+RRAIT LQS L E IV V+EV G+ P E
Sbjct: 190 QENIICEPEVFDILVDLSQGDLRRAITILQSTCELYSEEEIVKATSVIEVAGIPPLSVAE 249
Query: 270 KLLKVDSFQVLEKYIE---DLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
++ + ++ ++ D I E + + Q ++ L D +KA
Sbjct: 250 GIMNFCFTKDIDSIVQKTTDTINEGWDVATIIRQLVLLITENKDLDDAKKA 300
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 4/131 (3%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE-DVLEVTGVIPNPWIEKLLKVDSF 378
+ + LV+ S GD+RRAIT LQS L E IV V+EV G+ P E ++
Sbjct: 198 EVFDILVDLSQGDLRRAITILQSTCELYSEEEIVKATSVIEVAGIPPLSVAEGIMNFCFT 257
Query: 379 QVLEKYIE---DLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
+ ++ ++ D I E + + Q ++ L D +KA + +LAE +A + DG+
Sbjct: 258 KDIDSIVQKTTDTINEGWDVATIIRQLVLLITENKDLDDAKKAYLALRLAEADACITDGS 317
Query: 436 SEYIQILDLGS 446
+E++ +L++ S
Sbjct: 318 NEFLILLNICS 328
>gi|294920987|ref|XP_002778643.1| Replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239887323|gb|EER10438.1| Replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 277
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 129/238 (54%), Positives = 166/238 (69%), Gaps = 7/238 (2%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
+ + VPWVEKYRP ++++ Q EVV LK+ + +LPH LFYGPPG GKTS ++A
Sbjct: 19 QERAVPWVEKYRPARVEELAHQPEVVGALKEAVGTGNLPHLLFYGPPGNGKTSAILALAR 78
Query: 89 QLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ-DGKPCPPFKIVILDEA 146
+LFG +++R+R+LELNASD+RGI VIRDKVK FAQ + GK PPFKI++LDEA
Sbjct: 79 ELFGPELWRDRVLELNASDERGIDVIRDKVKKFAQISVRAVAPGSGKSAPPFKIIVLDEA 138
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
DSMT AQAALRR +E T+ TRFC+ICNYVS II+PL SRC+KFRF+PL++ + RL+
Sbjct: 139 DSMTKDAQAALRRIIENYTQVTRFCIICNYVSRIIEPLQSRCAKFRFEPLSDESQRGRLE 198
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQ---SCARLKGGEGIVNEDVLEVTG 261
YI E V A+E L+ TS GD+R AI LQ SC L E I E++LE +G
Sbjct: 199 YIANCEGVKMANGAMEALLGTSNGDLRSAINTLQMVSSC--LSDDEAITVEEILEASG 254
>gi|342181603|emb|CCC91083.1| putative replication factor C, subunit 2 [Trypanosoma congolense
IL3000]
Length = 347
Score = 259 bits (661), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 135/303 (44%), Positives = 190/303 (62%), Gaps = 16/303 (5%)
Query: 15 PSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCL-SGADLPHFLFYG 73
P K V +G R PWVEKYRPK++D+V Q+EVV L+ L GA +PHFLF+G
Sbjct: 5 PPLKKQRVEPNGDAR----PWVEKYRPKSLDEVKSQEEVVQALRSTLLQGASMPHFLFHG 60
Query: 74 PPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ-- 130
PPGTGKT+ ++A H++FG D + R+ ELNASDDRGIQVIR+KVK+FAQ Q
Sbjct: 61 PPGTGKTTAILAVAHEMFGPDYIKSRVRELNASDDRGIQVIREKVKSFAQAAVGTVQQKV 120
Query: 131 --DGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186
DGK P PPFK++ILDEAD++ AQ ALRR ME + TRFC++CNYV+ II P+ S
Sbjct: 121 QSDGKVYPVPPFKLIILDEADALLPDAQGALRRMMEDFSDVTRFCILCNYVTRIIDPIAS 180
Query: 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246
RC+K+RFKPL + + R+ + +E++ ++ L SGGD+R AI LQ A+
Sbjct: 181 RCAKYRFKPLIKQALHERISEVASRENIKISTASMNALDHVSGGDLRLAIMYLQY-AQKA 239
Query: 247 GGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHD 303
G + +ED +EV+G + + + + + V ++F + + LI + Y A Q+ Q D
Sbjct: 240 HGNNLESEDFVEVSGCVQEERMREYIAVLMSNNFDGMYSMTKLLIQQGYPAHQVLAQLQD 299
Query: 304 IVM 306
V+
Sbjct: 300 FVV 302
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 69/132 (52%), Gaps = 5/132 (3%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
++ L SGGD+R AI LQ A+ G + +ED +EV+G + + + + V ++
Sbjct: 214 SMNALDHVSGGDLRLAIMYLQY-AQKAHGNNLESEDFVEVSGCVQEERMREYIAVLMSNN 272
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSA-SSLSDKQKALILEKLAECNARLQDGAS 436
F + + LI + Y A Q+ Q D V+ +L ++ I KL E RL DG+
Sbjct: 273 FDGMYSMTKLLIQQGYPAHQVLAQLQDFVVGPLCTLDSAKRGAIALKLCEVEKRLSDGSD 332
Query: 437 EYIQILDLGSIV 448
+ +Q+LDLG+ +
Sbjct: 333 DLLQLLDLGAFI 344
>gi|407416746|gb|EKF37786.1| replication factor C, subunit 2, putative [Trypanosoma cruzi
marinkellei]
Length = 445
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 139/303 (45%), Positives = 189/303 (62%), Gaps = 16/303 (5%)
Query: 18 SKTSVSTSGKTRNKP--VPWVEKYRPKTIDDVIEQQEVVSVLKKCL-SGADLPHFLFYGP 74
+ TSVS + KP PWVEKYRP T+++V Q+E VS L+ L S A +PHFLF+GP
Sbjct: 100 ASTSVSKKPRIEPKPNATPWVEKYRPMTLNEVKSQEEAVSALRASLQSSASMPHFLFHGP 159
Query: 75 PGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG-----F 128
PGTGKT+ ++A +LFG D R+ E+NASDDRGIQVIR+KVK FA QTA G
Sbjct: 160 PGTGKTTAILAVARELFGPDYVHSRVREMNASDDRGIQVIREKVKVFA-QTAVGNVGHKV 218
Query: 129 NQDGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186
DG+ P P FK++ILDEAD++ AQAALRR ME + TRFC++CNYVS II P+ S
Sbjct: 219 QSDGQVYPVPQFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIAS 278
Query: 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246
RC+K+RFKPL + R++ I + E + +LE L SGGD+R AI LQ +
Sbjct: 279 RCAKYRFKPLVREALYDRIREIAKMEKLTVSDASLEALDRVSGGDLRSAIMYLQYAQKAH 338
Query: 247 GGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHD 303
G + + E+ LEV+G +P +EK LK F + ++L+ + + A+QL Q
Sbjct: 339 GSD-LTKENFLEVSGSVPMELLEKYLKALVTKDFDGMYSLTKELVGQGFPASQLLSQLQQ 397
Query: 304 IVM 306
++
Sbjct: 398 YII 400
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 12/157 (7%)
Query: 297 LFDQFHDIV-MLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 355
L+D+ +I M ++SD +LE L SGGD+R AI LQ + G + + E
Sbjct: 293 LYDRIREIAKMEKLTVSDA------SLEALDRVSGGDLRSAIMYLQYAQKAHGSD-LTKE 345
Query: 356 DVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-S 411
+ LEV+G +P +EK LK F + ++L+ + + A+QL Q ++S S
Sbjct: 346 NFLEVSGSVPMELLEKYLKALVTKDFDGMYSLTKELVGQGFPASQLLSQLQQYIISLSCP 405
Query: 412 LSDKQKALILEKLAECNARLQDGASEYIQILDLGSIV 448
L+ +++ I KL + RL DG E++Q+LDLG+ +
Sbjct: 406 LNSLERSRIALKLCDVERRLSDGGDEFLQLLDLGTTI 442
>gi|71654128|ref|XP_815689.1| replication factor C, subunit 2 [Trypanosoma cruzi strain CL
Brener]
gi|70880763|gb|EAN93838.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
Length = 347
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 138/303 (45%), Positives = 190/303 (62%), Gaps = 16/303 (5%)
Query: 21 SVSTSGKTRNKP--VPWVEKYRPKTIDDVIEQQEVVSVLKKCL-SGADLPHFLFYGPPGT 77
SV+ + +KP PWVEKYRP T+ +V Q+E V L+ L S A +PHFLF+GPPGT
Sbjct: 5 SVAKKPRIESKPNATPWVEKYRPMTLSEVKSQEEAVCALRASLQSSASMPHFLFHGPPGT 64
Query: 78 GKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG-----FNQD 131
GKT+ ++A +LFG D R+ E+NASDDRGIQVIR+KVK FAQ TA G D
Sbjct: 65 GKTTAILAVARELFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQ-TAVGNVGHKVQSD 123
Query: 132 GK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189
G+ P P FK++ILDEAD++ AQAALRR ME + TRFC++CNYVS II P+ SRC+
Sbjct: 124 GQVYPVPQFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCA 183
Query: 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249
K+RFKPL T+ R++ I + E + +LE L SGGD+R AI LQ + G +
Sbjct: 184 KYRFKPLVRETLYDRIREIAKMEEITVSDASLEALDRVSGGDLRSAIMYLQYAQKAHGSD 243
Query: 250 GIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
+ E+ LEV+G +P +EK LK F + ++++ + + A+QL Q H ++
Sbjct: 244 -LTKENFLEVSGSVPMELLEKYLKALVTKDFDGMYSLTKEIVGQGFPASQLLSQLHQYIV 302
Query: 307 LAS 309
+S
Sbjct: 303 GSS 305
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 84/157 (53%), Gaps = 12/157 (7%)
Query: 297 LFDQFHDIVMLAS-SLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 355
L+D+ +I + ++SD +LE L SGGD+R AI LQ + G + + E
Sbjct: 195 LYDRIREIAKMEEITVSDA------SLEALDRVSGGDLRSAIMYLQYAQKAHGSD-LTKE 247
Query: 356 DVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHD-IVMSASS 411
+ LEV+G +P +EK LK F + ++++ + + A+QL Q H IV S+
Sbjct: 248 NFLEVSGSVPMELLEKYLKALVTKDFDGMYSLTKEIVGQGFPASQLLSQLHQYIVGSSCP 307
Query: 412 LSDKQKALILEKLAECNARLQDGASEYIQILDLGSIV 448
L+ ++ I KL + RL DG E++Q+LDLG+ +
Sbjct: 308 LNSLVRSRIALKLCDVERRLSDGGDEFLQLLDLGTTI 344
>gi|66360032|ref|XP_627194.1| replication factor C like AAA ATpase [Cryptosporidium parvum Iowa
II]
gi|46228833|gb|EAK89703.1| replication factor C like AAA ATpase [Cryptosporidium parvum Iowa
II]
Length = 335
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 130/293 (44%), Positives = 187/293 (63%), Gaps = 8/293 (2%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
WVEKYRP + D+ ++VVS+L L ++PH LF+GPPGTGKTS ++A +LFG +
Sbjct: 9 WVEKYRPGNVLDISHHKDVVSMLSHVLKNGNMPHLLFHGPPGTGKTSAVLALSRELFGPN 68
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTAS---GFNQDGKPCPPFKIVILDEADSMT 150
Y+ RILELNASD+RGI V+RDK+K++ +Q G P +KIVILDEA+ MT
Sbjct: 69 EYKNRILELNASDERGISVVRDKIKSWTRQVVQCNKTHEITGNLLPSWKIVILDEAEMMT 128
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ+ALRR +E +K+TRF +ICNY+S II+PL SRC+KFRF+P++ N+ + RL+YIC
Sbjct: 129 ADAQSALRRIIEVSSKNTRFVIICNYISKIIEPLASRCAKFRFQPISANSQIERLKYICS 188
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG-IVNEDVLEVTGVIPKPWIE 269
QE V + LET+V S GD+RR I LQS + L G + I +L+V+GV P IE
Sbjct: 189 QEDVSYEDGVLETIVNLSQGDLRRGINILQSASELFGKDKRISMSSILDVSGVPPIKIIE 248
Query: 270 KLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALF 319
+++ K+ + + LI E +S +F + +++ + D +KA
Sbjct: 249 RIINSCKILGVESILIETAKLINEGWSVELIFKGLAEFIIMCDKIDDSKKAFL 301
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 74/132 (56%), Gaps = 4/132 (3%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEG-IVNEDVLEVTGVIPNPWIEKLL---KVD 376
LET+V S GD+RR I LQS + L G + I +L+V+GV P IE+++ K+
Sbjct: 198 VLETIVNLSQGDLRRGINILQSASELFGKDKRISMSSILDVSGVPPIKIIERIINSCKIL 257
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+ + LI E +S +F + ++ + D +KA ++ +++E +A + DG++
Sbjct: 258 GVESILIETAKLINEGWSVELIFKGLAEFIIMCDKIDDSKKAFLMLRISEADASVIDGSN 317
Query: 437 EYIQILDLGSIV 448
EY+ +L++ S V
Sbjct: 318 EYLTLLNVCSSV 329
>gi|320580296|gb|EFW94519.1| replication factor C subunit 2 [Ogataea parapolymorpha DL-1]
Length = 334
Score = 257 bits (657), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 134/304 (44%), Positives = 191/304 (62%), Gaps = 32/304 (10%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKY V VLK+ L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 8 MPWVEKY------------HAVQVLKRNLQTANLPHMLFYGPPGTGKTSTILAMAKELYG 55
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG---KPCPPFKIVILDEADS 148
++R R+LELNASD+RGI ++RDK+K FA+ + S +++ PCPP+K++ILDEADS
Sbjct: 56 PHLFRSRVLELNASDERGISIVRDKIKNFARLSISNPSKEDLEKYPCPPYKLLILDEADS 115
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRRTME + TRFCLICNY++ II PL SRCSKFRFK L E + RLQYI
Sbjct: 116 MTSDAQSALRRTMETYSGITRFCLICNYITRIIDPLASRCSKFRFKMLDEENSIKRLQYI 175
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL------KGGEGIVNEDVLEVTGV 262
C +E+V L+ ++ S GD+R+AI LQS ++ + + + + + +V G
Sbjct: 176 CNEENVTASTPVLKEILRISDGDLRKAINFLQSVHKMLMPAEDEMADDVTEDQIRDVFGY 235
Query: 263 IPKPWIEKLLKV----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLAS------SLS 312
+PK + +L+++ D ++ E + + E Y+AT + HD+++L SL
Sbjct: 236 LPKDQLMELIRLAEKKDMDRIFEFVTDYISKEGYNATLIISSLHDVLLLGDDSGISLSLD 295
Query: 313 DKQK 316
KQK
Sbjct: 296 GKQK 299
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 16/139 (11%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARL------KGGEGIVNEDVLEVTGVIPNPWIEKLLK 374
L+ ++ S GD+R+AI LQS ++ + + + + + +V G +P + +L++
Sbjct: 187 VLKEILRISDGDLRKAINFLQSVHKMLMPAEDEMADDVTEDQIRDVFGYLPKDQLMELIR 246
Query: 375 V----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS------SLSDKQKALILEKL 424
+ D ++ E + + E Y+AT + HD+++ SL KQK I L
Sbjct: 247 LAEKKDMDRIFEFVTDYISKEGYNATLIISSLHDVLLLGDDSGISLSLDGKQKNSISRIL 306
Query: 425 AECNARLQDGASEYIQILD 443
E +ARL G E IQILD
Sbjct: 307 FETDARLSHGCDETIQILD 325
>gi|71408237|ref|XP_806535.1| replication factor C, subunit 2 [Trypanosoma cruzi strain CL
Brener]
gi|70870309|gb|EAN84684.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
Length = 347
Score = 257 bits (657), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 138/304 (45%), Positives = 189/304 (62%), Gaps = 16/304 (5%)
Query: 20 TSVSTSGKTRNKP--VPWVEKYRPKTIDDVIEQQEVVSVLKKCLS-GADLPHFLFYGPPG 76
TSV+ + KP PWVEKYRP T+ +V Q+E V L+ L A +PHFLF+GPPG
Sbjct: 4 TSVAKKPRIEPKPNATPWVEKYRPMTLSEVKSQEEAVCALRASLQPSASMPHFLFHGPPG 63
Query: 77 TGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG-----FNQ 130
TGKT+ ++A +LFG D R+ E+NASDDRGIQVIR+KVK FAQ TA G
Sbjct: 64 TGKTTAILAVARELFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQ-TAVGSVGHKVQS 122
Query: 131 DGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRC 188
DG+ P P FK++ILDEAD++ AQAALRR ME + TRFC++CNYVS II P+ SRC
Sbjct: 123 DGQVYPVPQFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRC 182
Query: 189 SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG 248
+K+RFKPL T+ R++ I + E + +LE L SGGD+R AI LQ + G
Sbjct: 183 AKYRFKPLVRETLYDRIREIAKMEEITVSDASLEALDRVSGGDLRSAIMYLQYAQKAHGS 242
Query: 249 EGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305
+ + E+ LEV+G +P +EK LK F + ++++ + + A+QL Q H +
Sbjct: 243 D-LTKENFLEVSGSVPMELLEKYLKALVTKDFDGMYSLTKEIVGQGFPASQLLSQLHQYI 301
Query: 306 MLAS 309
+ +S
Sbjct: 302 IGSS 305
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 12/157 (7%)
Query: 297 LFDQFHDIVMLAS-SLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 355
L+D+ +I + ++SD +LE L SGGD+R AI LQ + G + + E
Sbjct: 195 LYDRIREIAKMEEITVSDA------SLEALDRVSGGDLRSAIMYLQYAQKAHGSD-LTKE 247
Query: 356 DVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHD-IVMSASS 411
+ LEV+G +P +EK LK F + ++++ + + A+QL Q H I+ S+
Sbjct: 248 NFLEVSGSVPMELLEKYLKALVTKDFDGMYSLTKEIVGQGFPASQLLSQLHQYIIGSSCP 307
Query: 412 LSDKQKALILEKLAECNARLQDGASEYIQILDLGSIV 448
L+ ++ I KL + RL DG E++Q+LDLG+ +
Sbjct: 308 LNSLVRSRIALKLCDVERRLSDGGDEFLQLLDLGTTI 344
>gi|299472904|emb|CBN80473.1| EsV-1-182 , RFC small subunit [Ectocarpus siliculosus]
Length = 326
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 133/297 (44%), Positives = 186/297 (62%), Gaps = 16/297 (5%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ + DV+ + VLK DLPH LF+GPPGTGKTST++A L G+
Sbjct: 3 PWVEKYRPRRVKDVVHHDHLKRVLKGAEKTGDLPHLLFHGPPGTGKTSTILALARTLLGE 62
Query: 94 -MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
RER+LELNASD+RG+ V+RDK+KTF + + S F Q G CPPFK+VILDEAD+MT
Sbjct: 63 ENMRERVLELNASDERGLDVVRDKIKTFCKMSISSF-QPG--CPPFKLVILDEADTMTAD 119
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRRTME + TRFCL+CNYVS II PL SRC+KFRF L +M RL YICE+E
Sbjct: 120 AQSALRRTMETQAVVTRFCLVCNYVSKIIAPLASRCAKFRFSTLTPESMKGRLLYICERE 179
Query: 213 SVM---CDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIE 269
+++ C L+ +V++S GDMR A+ LQ+ ++ + + E V+EV G +P+ +
Sbjct: 180 NIIFENCSRGVLDAIVKSSRGDMRSAVNLLQTVSQQQ--HRVTPESVVEVAGEVPERAFD 237
Query: 270 KLL-------KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALF 319
L ++ F+ + + + E Y ++ + V+ + L + KA+
Sbjct: 238 TLWSAVTSPSHLEHFEDVVDAVSTFVGEGYPVGKVLSEIQSRVVQSGELENADKAVI 294
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 69/137 (50%), Gaps = 9/137 (6%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL-------K 374
L+ +V++S GDMR A+ LQ+ ++ + + E V+EV G +P + L
Sbjct: 191 LDAIVKSSRGDMRSAVNLLQTVSQQQ--HRVTPESVVEVAGEVPERAFDTLWSAVTSPSH 248
Query: 375 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
++ F+ + + + E Y ++ + V+ + L + KA+I +L E + L DG
Sbjct: 249 LEHFEDVVDAVSTFVGEGYPVGKVLSEIQSRVVQSGELENADKAVICLELMETDRCLNDG 308
Query: 435 ASEYIQILDLGSIVIKA 451
A E +Q+L++ +V A
Sbjct: 309 ADEELQLLNICLVVQSA 325
>gi|452001809|gb|EMD94268.1| hypothetical protein COCHEDRAFT_1028190 [Cochliobolus heterostrophus
C5]
Length = 1071
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 144/363 (39%), Positives = 200/363 (55%), Gaps = 64/363 (17%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
T+ + N+ PWVEKYRPKT+ +V Q + VL + + ++LPH LFYGPPGTGKTST+
Sbjct: 678 TTKQEPNRLQPWVEKYRPKTLSEVTAQDNTIQVLSRTMQSSNLPHMLFYGPPGTGKTSTI 737
Query: 84 IAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQ---TASGFN---------- 129
+A +L+G ++ + R+LELNASD+RGI ++R KVK FA+Q A +N
Sbjct: 738 LALAKELYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMVEDKSGTG 797
Query: 130 -------QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQ 182
+D PCPPFKI++LDEADSMT AQ+ALRRTME ++ TRFCL+CNYV+ II
Sbjct: 798 EGGMVRYRDKYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIID 857
Query: 183 PLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
PL SRCSKFRFK L + + R+ I E+V D E LV + GD+R+AIT LQS
Sbjct: 858 PLASRCSKFRFKSLDQGNAVKRVSDIAALENVRLDDGVAEELVRVADGDLRKAITFLQSA 917
Query: 243 ARL------KGGEG-------IVNED--------------------VLEVTGVIPKPWIE 269
ARL +GG V ED + E+ GV+P +
Sbjct: 918 ARLVGAIQSQGGSNKKGKKRTAVPEDDEMDIDSSNTATTPSVSLPTIAEIAGVLPPDTLS 977
Query: 270 KLL----------KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALF 319
K + + K +E+++ E +SA Q Q ++ +M + D +K
Sbjct: 978 TFTSALFPKSSAQKSIRYHEIAKVVENMVAEGWSAAQTVGQLYEQLMFDERVEDVKKVRL 1037
Query: 320 KAL 322
A+
Sbjct: 1038 AAV 1040
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 74/166 (44%), Gaps = 43/166 (25%)
Query: 323 ETLVETSGGDMRRAITCLQSCARL------KGGEG-------IVNED------------- 356
E LV + GD+R+AIT LQS ARL +GG V ED
Sbjct: 897 EELVRVADGDLRKAITFLQSAARLVGAIQSQGGSNKKGKKRTAVPEDDEMDIDSSNTATT 956
Query: 357 -------VLEVTGVIP----NPWIEKLLKVDS------FQVLEKYIEDLILEAYSATQLF 399
+ E+ GV+P + + L S + + K +E+++ E +SA Q
Sbjct: 957 PSVSLPTIAEIAGVLPPDTLSTFTSALFPKSSAQKSIRYHEIAKVVENMVAEGWSAAQTV 1016
Query: 400 DQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 445
Q ++ +M + D +K + +E + RL DG+ E++ +LDLG
Sbjct: 1017 GQLYEQLMFDERVEDVKKVRLAAVFSETDKRLVDGSDEHLAVLDLG 1062
>gi|330921788|ref|XP_003299563.1| hypothetical protein PTT_10587 [Pyrenophora teres f. teres 0-1]
gi|311326698|gb|EFQ92339.1| hypothetical protein PTT_10587 [Pyrenophora teres f. teres 0-1]
Length = 418
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 144/382 (37%), Positives = 206/382 (53%), Gaps = 68/382 (17%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
T+ + N+ PWVEKYRPKT+ +V Q + +L + + ++LPH LFYGPPGTGKTST+
Sbjct: 24 TTKQEPNRLQPWVEKYRPKTLSEVTAQDNTIQILSRTMQSSNLPHMLFYGPPGTGKTSTI 83
Query: 84 IAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQ---TASGFN---------- 129
+A +L+G ++ + R+LELNASD+RGI ++R KVK FA+Q A +N
Sbjct: 84 LALAKELYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPNYNIMVEDKSSGE 143
Query: 130 ------QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183
+D PCPPFKI++LDEADSMT AQ+ALRRTME ++ TRFCL+CNYV+ II P
Sbjct: 144 AKTVRYRDKYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDP 203
Query: 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
L SRCSKFRFK L + + R+ I + E+V + E LV + GD+R+AIT LQS A
Sbjct: 204 LASRCSKFRFKSLDQGNAVKRVSDIAKLENVSLEDDVAEELVRVADGDLRKAITFLQSAA 263
Query: 244 RL-----------------KGGEGIVNED------------------VLEVTGVIPKPWI 268
RL + +V ED + E+ GV+P +
Sbjct: 264 RLVGAVQAANGGGAGASKKGKKKVVVEEDEMDVDAPPTSTPAISLPIIAEIAGVLPPATL 323
Query: 269 EKL----------LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKAL 318
K + + K +E++I E +SA Q Q ++ +M + D +K
Sbjct: 324 STFSDSLFPKSASAKQIRYNEIAKIVENMIAEGWSAQQTVGQLYEQIMFDERIEDVKKVR 383
Query: 319 FKALETLVE---TSGGDMRRAI 337
+ + + GGD A+
Sbjct: 384 LAGVFSETDKRLVDGGDEHLAV 405
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 45/168 (26%)
Query: 323 ETLVETSGGDMRRAITCLQSCARL-----------------KGGEGIVNED--------- 356
E LV + GD+R+AIT LQS ARL + +V ED
Sbjct: 242 EELVRVADGDLRKAITFLQSAARLVGAVQAANGGGAGASKKGKKKVVVEEDEMDVDAPPT 301
Query: 357 ---------VLEVTGVIPNPWIEKL----------LKVDSFQVLEKYIEDLILEAYSATQ 397
+ E+ GV+P + K + + K +E++I E +SA Q
Sbjct: 302 STPAISLPIIAEIAGVLPPATLSTFSDSLFPKSASAKQIRYNEIAKIVENMIAEGWSAQQ 361
Query: 398 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 445
Q ++ +M + D +K + +E + RL DG E++ +LDLG
Sbjct: 362 TVGQLYEQIMFDERIEDVKKVRLAGVFSETDKRLVDGGDEHLAVLDLG 409
>gi|328767253|gb|EGF77303.1| hypothetical protein BATDEDRAFT_91654 [Batrachochytrium
dendrobatidis JAM81]
Length = 326
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 127/288 (44%), Positives = 182/288 (63%), Gaps = 7/288 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PW E+YRPKT+ ++ Q EVV+VL + +LPH L YGPPGTGKTS ++A QL+G
Sbjct: 9 PWTERYRPKTLSEISGQNEVVAVLSNTIQTQNLPHLLLYGPPGTGKTSIILALARQLYGA 68
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ + R+LELNASD+RGI VIR+KVK FA+ T S + + PP+KI++LDEADS+T
Sbjct: 69 NGLKGRLLELNASDERGIDVIREKVKNFAKITVSAAHSNA---PPYKIIVLDEADSLTTD 125
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRR ME +K TRFCLICNYVS II PL SRC+K RFKP+ ++ RL+ IC E
Sbjct: 126 AQSALRRIMENYSKITRFCLICNYVSRIIDPLASRCAKLRFKPIPMPIVIERLELICSNE 185
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
+ AL+ L + GD+R+AIT LQS ++ G + V +++G+IP + ++
Sbjct: 186 KLSFAPGALDFLATSCAGDLRKAITLLQSIKKVSIGSTVTKSLVADISGIIPDSVMAGII 245
Query: 273 KVDS---FQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
+ S + +E ++ I YS T Q +++ L ++ K+
Sbjct: 246 QAWSSGKVENVEAELKQTIRMGYSGTAFIQQLSNLIAEDPHLKERHKS 293
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 66/125 (52%), Gaps = 3/125 (2%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDS--- 377
AL+ L + GD+R+AIT LQS ++ G + V +++G+IP+ + +++ S
Sbjct: 193 ALDFLATSCAGDLRKAITLLQSIKKVSIGSTVTKSLVADISGIIPDSVMAGIIQAWSSGK 252
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
+ +E ++ I YS T Q +++ L ++ K+ + L + + L DGA E
Sbjct: 253 VENVEAELKQTIRMGYSGTAFIQQLSNLIAEDPHLKERHKSKVAVLLGQTDRALVDGADE 312
Query: 438 YIQIL 442
++QIL
Sbjct: 313 HLQIL 317
>gi|219109832|ref|XP_002176669.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411204|gb|EEC51132.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 350
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 137/312 (43%), Positives = 193/312 (61%), Gaps = 15/312 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVE+YRPK++ +V Q EVV+ L+ ++ LPH L YGPPG+GKTS +A C QL+
Sbjct: 17 PWVERYRPKSLQEVSHQTEVVATLQNAVTTGRLPHLLLYGPPGSGKTSVALALCRQLWHP 76
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD--GKPCPPFKIVILDEADSMT 150
+R R+LELNASD+RGI V+R+K+K FA T + N D P PPFKI+ILDEAD++T
Sbjct: 77 SQWRRRVLELNASDERGISVVRNKIKHFASLTVAKGNNDMENYPNPPFKIIILDEADTVT 136
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC- 209
AQAALRR +E +K TRF LICNYV+ +I+PL SRC+KFRF+ L ++M RL++I
Sbjct: 137 PDAQAALRRIIEAHSKITRFILICNYVTRVIEPLASRCAKFRFQSLPPSSMKARLEWIAN 196
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIE 269
EQ + L+ ++E + GDMR+A+T LQS L G V++ L +P P I
Sbjct: 197 EQNCSESEKDLLDDILEYADGDMRQAVTTLQSVHSLAAGGAKVDKAALAEIAGLPPPAIV 256
Query: 270 KLLKV----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA-----LFK 320
+L +SF +EK +E L E +SA L ++ L++ KA + +
Sbjct: 257 DMLWTALLSNSFDTMEKVVETLSAEGFSAQLLLSALVPKLVTDQDLNELSKAELAIRIAE 316
Query: 321 ALETLVETSGGD 332
A + ++E GGD
Sbjct: 317 AEKNMIE--GGD 326
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 4/132 (3%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV----DS 377
L+ ++E + GDMR+A+T LQS L G V++ L +P P I +L +S
Sbjct: 208 LDDILEYADGDMRQAVTTLQSVHSLAAGGAKVDKAALAEIAGLPPPAIVDMLWTALLSNS 267
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
F +EK +E L E +SA L +++ L++ KA + ++AE + +G E
Sbjct: 268 FDTMEKVVETLSAEGFSAQLLLSALVPKLVTDQDLNELSKAELAIRIAEAEKNMIEGGDE 327
Query: 438 YIQILDLGSIVI 449
+Q+L + S+ +
Sbjct: 328 QLQLLTVCSLAV 339
>gi|224106792|ref|XP_002333632.1| predicted protein [Populus trichocarpa]
gi|222837855|gb|EEE76220.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 136/266 (51%), Positives = 172/266 (64%), Gaps = 6/266 (2%)
Query: 49 EQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDD 107
Q EVV VL L A+ PH LFYGPPGTGKT+T +A HQL+G ++Y+ +LELNASDD
Sbjct: 18 HQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLYGPELYKSMVLELNASDD 77
Query: 108 RGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETK 166
RGI V+ K+K FA SG Q G PCPP+KI ILDEADSMT AQ ALR TME +K
Sbjct: 78 RGINVVWTKIKDFASVAVGSGQCQGGYPCPPYKITILDEADSMTEDAQNALRLTMETFSK 137
Query: 167 STRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVE 226
TRF ICNY+S II+PL SRC+KFRFKPL+E +R+ +IC +E + D +AL TL
Sbjct: 138 VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEITSSRILHICNEEGLTLDGEALSTLSS 197
Query: 227 TSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKY 283
S GD+ RAIT LQ ARL G I +ED++ V+G I + E L K F + K
Sbjct: 198 ISQGDLCRAITYLQGAARLF-GSSISSEDLISVSGAIRQEVTEALYEACKSGDFDLANKE 256
Query: 284 IEDLILEAYSATQLFDQFHDIVMLAS 309
+ ++I E Y +Q+ Q I+ LA+
Sbjct: 257 VNNIIAEGYPVSQILAQVPFILSLAN 282
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
+AL TL S GD+ RAIT LQ ARL G I +ED++ V+G I E L K
Sbjct: 190 EALSTLSSISQGDLCRAITYLQGAARLF-GSSISSEDLISVSGAIRQEVTEALYEACKSG 248
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQ 401
F + K + ++I E Y +Q+ Q
Sbjct: 249 DFDLANKEVNNIIAEGYPVSQILAQ 273
>gi|70951019|ref|XP_744784.1| replication factor C, subunit 2 [Plasmodium chabaudi chabaudi]
gi|56524878|emb|CAH75042.1| replication factor C, subunit 2, putative [Plasmodium chabaudi
chabaudi]
Length = 330
Score = 254 bits (648), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 128/309 (41%), Positives = 196/309 (63%), Gaps = 14/309 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD++ Q +S+LK+ + ++PH +F+GPPGTGKTS + A H+LFG
Sbjct: 4 LPWVEKYRPKKLDDIVHQTNAISMLKEVIKTKNMPHLIFHGPPGTGKTSAINALAHELFG 63
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF---NQDGKPCPPFKIVILDEADS 148
+ ER+LELNASDDRGI V+R+K+K + + + S N+ +P PP+K+V+LDEAD
Sbjct: 64 KENISERVLELNASDDRGITVVREKIKAYTRISISKNKINNETNEPLPPWKLVVLDEADM 123
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRR +E + TRF LICNY+ I P+ SRCS +RF+ + N +L YI
Sbjct: 124 MTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPLNIKKEKLLYI 183
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWI 268
C E++ AL ++ET+ GD+RRA++ LQ C+ + I E VL+++G+ I
Sbjct: 184 CNNENINISDDALTKIIETTQGDLRRAVSVLQLCSCIDS--KITVESVLDISGLPDNDII 241
Query: 269 EKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETL 325
K++ KV F++LEK I+D+I + + + +F ++ ++ ++D K + L
Sbjct: 242 LKIVDSCKVKDFKILEKTIQDIIEDGFDVSYIFKALNEYFVMCQDINDSIK-----YQIL 296
Query: 326 VETSGGDMR 334
+E S D R
Sbjct: 297 MELSRHDFR 305
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 79/131 (60%), Gaps = 5/131 (3%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDS 377
AL ++ET+ GD+RRA++ LQ C+ + I E VL+++G+ N I K++ KV
Sbjct: 195 ALTKIIETTQGDLRRAVSVLQLCSCIDSK--ITVESVLDISGLPDNDIILKIVDSCKVKD 252
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
F++LEK I+D+I + + + +F ++ + ++D K IL +L+ + RL +GA++
Sbjct: 253 FKILEKTIQDIIEDGFDVSYIFKALNEYFVMCQDINDSIKYQILMELSRHDFRLHNGATK 312
Query: 438 YIQILDLGSIV 448
YIQ++ S V
Sbjct: 313 YIQLMSFASSV 323
>gi|13242652|ref|NP_077667.1| EsV-1-182 [Ectocarpus siliculosus virus 1]
gi|13177452|gb|AAK14596.1|AF204951_181 EsV-1-182 [Ectocarpus siliculosus virus 1]
Length = 326
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 130/296 (43%), Positives = 183/296 (61%), Gaps = 18/296 (6%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ + DV+ + VL DLPH LF+GPPGTGKTST++A L G+
Sbjct: 3 PWVEKYRPRRVRDVVHHDHLKRVLNGAEKTGDLPHLLFHGPPGTGKTSTILALARTLLGE 62
Query: 94 -MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
RER+LELNASD+RG+ V+RDK+KTF++ + S F Q G CPPFK+VILDEAD+MT
Sbjct: 63 GNMRERVLELNASDERGLDVVRDKIKTFSKMSISSF-QPG--CPPFKLVILDEADTMTAD 119
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRRTME + TRFCL+CNYVS II PL SRC+KFRF LA +M RL +ICE+E
Sbjct: 120 AQSALRRTMETHSVVTRFCLVCNYVSKIIAPLASRCAKFRFSTLAPKSMKGRLLHICERE 179
Query: 213 SVM---CDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIE 269
+++ C L+ +V++S GDMR A+ LQ+ ++ + E ++E+ G +P+ +
Sbjct: 180 NIIFENCSRSVLDAIVKSSRGDMRSAVNLLQTVSQ---QPRVTPESIVEIAGEVPERVFD 236
Query: 270 KLLKV--------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
L F+ + + + E Y ++ + V+ + + D KA
Sbjct: 237 MLWSAVTSQPRQPGHFEAVTDAVSTFVGEGYPVGKVLSEIQGRVVHSGEIEDADKA 292
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 11/135 (8%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV------ 375
L+ +V++S GDMR A+ LQ+ ++ + E ++E+ G +P + L
Sbjct: 191 LDAIVKSSRGDMRSAVNLLQTVSQ---QPRVTPESIVEIAGEVPERVFDMLWSAVTSQPR 247
Query: 376 --DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQD 433
F+ + + + E Y ++ + V+ + + D KA I L E + L D
Sbjct: 248 QPGHFEAVTDAVSTFVGEGYPVGKVLSEIQGRVVHSGEIEDADKAAICLSLMETDRCLND 307
Query: 434 GASEYIQILDLGSIV 448
GA E +Q+L++ +V
Sbjct: 308 GADEELQLLNICFVV 322
>gi|82539183|ref|XP_724000.1| replication factor C, 40 kDa subunit [Plasmodium yoelii yoelii
17XNL]
gi|23478491|gb|EAA15565.1| replication factor C, 40 kDa subunit [Plasmodium yoelii yoelii]
Length = 330
Score = 251 bits (641), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 125/309 (40%), Positives = 198/309 (64%), Gaps = 14/309 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD++ Q +S+LK+ + ++PH +F+GPPGTGKTS + A H+LFG
Sbjct: 4 LPWVEKYRPKKLDDIVHQTNAISMLKEVIKTKNMPHLIFHGPPGTGKTSAINALAHELFG 63
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF---NQDGKPCPPFKIVILDEADS 148
+ ER+LELNASDDRGI V+R+K+K + + + S +++ +P PP+K+V+LDEAD
Sbjct: 64 KENISERVLELNASDDRGINVVREKIKAYTRISISKNKINSENNEPLPPWKLVVLDEADM 123
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRR +E + TRF LICNY+ I P+ SRCS +RF+ + N +L YI
Sbjct: 124 MTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPINIKKEKLLYI 183
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWI 268
C+ E++ AL ++ET+ GD+RRA++ LQ C+ + I + VL+V+G+ I
Sbjct: 184 CKNENIDISDNALSKIIETTQGDLRRAVSVLQLCSCIDS--KITVDSVLDVSGLPDNDVI 241
Query: 269 EKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETL 325
K++ K+ F++LEK ++D+I + + + +F ++ ++ ++D K + L
Sbjct: 242 LKIVDSCKMKDFKILEKTVQDIIEDGFDVSYIFKSLNEYFVMCQDINDSIK-----YQIL 296
Query: 326 VETSGGDMR 334
+E S D R
Sbjct: 297 MELSRHDFR 305
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 79/132 (59%), Gaps = 5/132 (3%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
AL ++ET+ GD+RRA++ LQ C+ + I + VL+V+G+ N I K++ K+
Sbjct: 194 NALSKIIETTQGDLRRAVSVLQLCSCIDSK--ITVDSVLDVSGLPDNDVILKIVDSCKMK 251
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F++LEK ++D+I + + + +F ++ + ++D K IL +L+ + RL +GA+
Sbjct: 252 DFKILEKTVQDIIEDGFDVSYIFKSLNEYFVMCQDINDSIKYQILMELSRHDFRLHNGAT 311
Query: 437 EYIQILDLGSIV 448
+YIQ++ S V
Sbjct: 312 KYIQLMSFASSV 323
>gi|353241984|emb|CCA73760.1| probable RFC2-DNA replication factor C, 41 KD subunit
[Piriformospora indica DSM 11827]
Length = 358
Score = 251 bits (640), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 142/322 (44%), Positives = 182/322 (56%), Gaps = 59/322 (18%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+D+V Q VSVLKK S CH +
Sbjct: 22 PWVEKYRPKTMDEVSSQDHAVSVLKKHYSRQ---------------------TCHICYSM 60
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ---DGK--PCPPFKIVILDEA 146
++R R+LELNASD+RGI ++R+K+K FA+QT DGK PCPP+K++ILDEA
Sbjct: 61 DPLFRHRVLELNASDERGIAIVREKIKDFARQTPKAVTSAASDGKVYPCPPYKLIILDEA 120
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
DSMT AQ ALRR ME K TRFCLICNYV+ II+PLTSRCSKFRFKPL ++ RL+
Sbjct: 121 DSMTQDAQGALRRIMETYAKITRFCLICNYVTRIIEPLTSRCSKFRFKPLDTSSTSIRLK 180
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL---------KGGEGIVNEDVL 257
I E+V + LV TSGGD+RRAIT LQSC+RL K + I EDV
Sbjct: 181 EIAAAENVEVSDDVVSALVTTSGGDLRRAITYLQSCSRLAHATVDEVNKAPQKIRPEDVQ 240
Query: 258 EVTGVIPKPWIEKL----------------------LKVDSFQVLEKYIEDLILEAYSAT 295
E+ GV+P IE ++ +F + K ++++ E YSA
Sbjct: 241 EIAGVVPDHVIESFAAVLGVEVDGASKNSMSIDNATVRAKTFDDVRKKVKEISREGYSAA 300
Query: 296 QLFDQFHDIVMLASSLSDKQKA 317
Q+ Q HD+V+L L ++KA
Sbjct: 301 QILSQLHDVVILHPRLDARRKA 322
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/222 (29%), Positives = 103/222 (46%), Gaps = 39/222 (17%)
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALE---- 323
+E K+ F ++ Y+ +I S F +F + ++S+ K+ A + +E
Sbjct: 135 METYAKITRFCLICNYVTRIIEPLTSRCSKF-RFKPLDTSSTSIRLKEIAAAENVEVSDD 193
Query: 324 ---TLVETSGGDMRRAITCLQSCARL---------KGGEGIVNEDVLEVTGVIPNPWIEK 371
LV TSGGD+RRAIT LQSC+RL K + I EDV E+ GV+P+ IE
Sbjct: 194 VVSALVTTSGGDLRRAITYLQSCSRLAHATVDEVNKAPQKIRPEDVQEIAGVVPDHVIES 253
Query: 372 L----------------------LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSA 409
++ +F + K ++++ E YSA Q+ Q HD+V+
Sbjct: 254 FAAVLGVEVDGASKNSMSIDNATVRAKTFDDVRKKVKEISREGYSAAQILSQLHDVVILH 313
Query: 410 SSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 451
L ++KA L E + L DGA E + L+ G + KA
Sbjct: 314 PRLDARRKAACALILGEADKALCDGADEELWTLETGLRIWKA 355
>gi|388513801|gb|AFK44962.1| unknown [Lotus japonicus]
Length = 231
Score = 250 bits (639), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 121/202 (59%), Positives = 147/202 (72%), Gaps = 5/202 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK ++DV Q EVV VL L PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVEDVAYQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN--QDGKPCPPFKIVILDEADSMT 150
++Y+ R+LELNASDDRGI V+R K+K FA A G N + G PCPP+KI++LDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAA-VAVGTNPKKGGYPCPPYKIIVLDEADSMT 128
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M +R+ YIC
Sbjct: 129 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILYICN 188
Query: 211 QESVMCDFKALETLVETSGGDM 232
+E ++ D + L TL S GD+
Sbjct: 189 EEGIL-DAEGLSTLSSISQGDL 209
>gi|399219086|emb|CCF75973.1| unnamed protein product [Babesia microti strain RI]
Length = 340
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 136/292 (46%), Positives = 184/292 (63%), Gaps = 9/292 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPKTI +V Q VS L + + ++PH +FYGPPGTGKTS +A QLFG
Sbjct: 15 LPWVEKYRPKTISEVSHQINPVSALNQIVKTLNMPHLIFYGPPGTGKTSAALALARQLFG 74
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN---QDGKPCPPFKIVILDEADS 148
D +ERILELNASDDRGI V+R+K+KT+A+ S + GKP PP+KIVILDEAD
Sbjct: 75 KDGLKERILELNASDDRGIDVVREKIKTYARLNISKNRINPETGKPMPPWKIVILDEADM 134
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQAALRR +E + TRF ICNY+ II PL SRCS RF+P+A+ ++RL +I
Sbjct: 135 MTSDAQAALRRAIENYSTITRFIFICNYIYKIIDPLCSRCSLQRFQPIAKQAQISRLVFI 194
Query: 209 CEQESVMC-DFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW 267
CEQE + +A+E LV S GD+RR+IT LQ+ L + I + V ++ G+ P+
Sbjct: 195 CEQEKISSFTNEAMEALVRVSQGDLRRSITLLQTIGSLY--KNITEDIVYDIAGIPPRVV 252
Query: 268 IEKLLKV--DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
+ LLK + ++ ++ +I + + + + Q DIV L D KA
Sbjct: 253 VIDLLKSCKGTMDDVDTAVKIIIDQGWDVSDIMSQICDIVANDVELDDISKA 304
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 4/127 (3%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV--DS 377
+A+E LV S GD+RR+IT LQ+ L + I + V ++ G+ P + LLK +
Sbjct: 206 EAMEALVRVSQGDLRRSITLLQTIGSLY--KNITEDIVYDIAGIPPRVVVIDLLKSCKGT 263
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
++ ++ +I + + + + Q DIV + L D KA I +L+ + L GAS+
Sbjct: 264 MDDVDTAVKIIIDQGWDVSDIMSQICDIVANDVELDDISKARISLELSNRDFALFQGASQ 323
Query: 438 YIQILDL 444
Y Q+L L
Sbjct: 324 YFQLLSL 330
>gi|68070283|ref|XP_677053.1| replication factor C, subunit 2 [Plasmodium berghei strain ANKA]
gi|56497014|emb|CAH96737.1| replication factor C, subunit 2, putative [Plasmodium berghei]
Length = 330
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 126/309 (40%), Positives = 197/309 (63%), Gaps = 14/309 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD++ Q +S+LK+ + ++PH +F+GPPGTGKTS + A H+LFG
Sbjct: 4 LPWVEKYRPKKLDDIVHQTNAISMLKEVIKTKNMPHLIFHGPPGTGKTSAINALAHELFG 63
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF---NQDGKPCPPFKIVILDEADS 148
+ ER+LELNASDDRGI V+R+K+K + + + S + + PP+K+V+LDEAD
Sbjct: 64 KENINERVLELNASDDRGINVVREKIKAYTRISISKNKINTETNEQLPPWKLVVLDEADM 123
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRR +E + TRF LICNY+ I P+ SRCS +RF+ + N +L YI
Sbjct: 124 MTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPINIKKEKLLYI 183
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWI 268
C+ E++ AL ++ET+ GD+RRA++ LQ CA + I + VL+V+G+ I
Sbjct: 184 CKNENIDISDNALSKIIETTQGDLRRAVSVLQLCACIDS--KITVDSVLDVSGLPGNDVI 241
Query: 269 EKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETL 325
K++ K+ +F++LEK I+D+I + + + +F ++ +++ ++D K + L
Sbjct: 242 LKIVNSCKMKNFKILEKTIQDIIEDGFDVSYIFKALNEYFVMSQDINDSIK-----YQIL 296
Query: 326 VETSGGDMR 334
+E S D R
Sbjct: 297 MELSRHDFR 305
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 81/132 (61%), Gaps = 5/132 (3%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 376
AL ++ET+ GD+RRA++ LQ CA + I + VL+V+G+ N I K++ K+
Sbjct: 194 NALSKIIETTQGDLRRAVSVLQLCACIDSK--ITVDSVLDVSGLPGNDVILKIVNSCKMK 251
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+F++LEK I+D+I + + + +F ++ + + ++D K IL +L+ + RL +GA+
Sbjct: 252 NFKILEKTIQDIIEDGFDVSYIFKALNEYFVMSQDINDSIKYQILMELSRHDFRLHNGAT 311
Query: 437 EYIQILDLGSIV 448
+YIQ++ S V
Sbjct: 312 KYIQLMSFASSV 323
>gi|156088043|ref|XP_001611428.1| hypothetical protein [Babesia bovis T2Bo]
gi|154798682|gb|EDO07860.1| conserved hypothetical protein [Babesia bovis]
Length = 336
Score = 249 bits (635), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 127/307 (41%), Positives = 192/307 (62%), Gaps = 13/307 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPWVEKYRP ++DD++ ++ ++ + D+PH +F+GPPGTGKTS +A Q++G
Sbjct: 5 VPWVEKYRPASLDDIVFHTNAMTTMRHIVESYDMPHMIFHGPPGTGKTSAALAIARQIYG 64
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF---NQDGKPCPPFKIVILDEADS 148
+ +ER+LELNASD+RGI V+R+++KT+ + S Q G+ P FK++ILDEAD
Sbjct: 65 PEGMKERVLELNASDERGINVVRERIKTYTRLNISSNRVNTQTGRVMPNFKMIILDEADM 124
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
+T AQAALRR +E + +RF LICNYV II P+ SRCS F FKP++++ + RL+YI
Sbjct: 125 ITPDAQAALRRIIENFSNISRFILICNYVHKIIGPIYSRCSAFHFKPISQDAQIERLRYI 184
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWI 268
C ES+ + AL+ L + S GDMRR++T LQS A L + E V V+G PK +
Sbjct: 185 CTAESLEYEDHALDFLTQVSQGDMRRSVTILQSTASLFN--KVTEEAVRNVSGYPPKEIV 242
Query: 269 EKLLKV--DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLV 326
++ + Q +E+ + +I + + LF Q + V+ ++SL+D QKA +
Sbjct: 243 NEIFATCKGTTQDVEELCKKIIYDGWEVATLFQQISEYVVNSASLTDVQKATIT-----I 297
Query: 327 ETSGGDM 333
E SG ++
Sbjct: 298 ELSGREL 304
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 86/190 (45%), Gaps = 20/190 (10%)
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDI-----------VMLASSLSDKQK 316
IE + F ++ Y+ +I YS F F I + A SL +
Sbjct: 137 IENFSNISRFILICNYVHKIIGPIYSRCSAF-HFKPISQDAQIERLRYICTAESLEYEDH 195
Query: 317 ALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV- 375
AL + L + S GDMRR++T LQS A L + E V V+G P + ++
Sbjct: 196 AL----DFLTQVSQGDMRRSVTILQSTASLFNK--VTEEAVRNVSGYPPKEIVNEIFATC 249
Query: 376 -DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
+ Q +E+ + +I + + LF Q + V++++SL+D QKA I +L+ L G
Sbjct: 250 KGTTQDVEELCKKIIYDGWEVATLFQQISEYVVNSASLTDVQKATITIELSGRELALIQG 309
Query: 435 ASEYIQILDL 444
+Y Q+ L
Sbjct: 310 GLQYFQLASL 319
>gi|225680958|gb|EEH19242.1| replication factor C subunit 4 [Paracoccidioides brasiliensis Pb03]
Length = 374
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 194/327 (59%), Gaps = 37/327 (11%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
S K S + TR +P WVEKYRPKT+DDV Q+ ++VL++ L ++LPH LFYGPP
Sbjct: 20 SKPKASEKEADNTRLQP--WVEKYRPKTLDDVASQEHTITVLQRTLQASNLPHMLFYGPP 77
Query: 76 GTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ---- 130
GTGKTST++A LFG +YR RILELNASD+RGI ++R+K+K FA+ S
Sbjct: 78 GTGKTSTILALSKSLFGPQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPVSDTA 137
Query: 131 --DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRC 188
+ PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II PL SRC
Sbjct: 138 YCEKYPCPPFKIIILDEADSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRC 197
Query: 189 SKFRFKPLAENTMLTRLQYICEQESV-MCD----------FKALETLVETSGGDMRRAIT 237
SKFRFK L + +RL+ I E + + D + + GGD A
Sbjct: 198 SKFRFKALDGSAAGSRLEEIARVEKLRLADGVRPGWWGSGLVSKPPPGKDEGGDEDMADA 257
Query: 238 CLQSCARLKGGEGIVN-EDVLEVTGVIPKPWIEKLLKVDS-------FQVLEKYIEDLIL 289
G EG++ + E+ GV+P + +L+K ++ + K + D++
Sbjct: 258 ---------GDEGVITVRTIEEIAGVVPDDIVNRLVKALQPKKARLPYEEVSKVVTDIVA 308
Query: 290 EAYSATQLFDQFHDIVMLASSLSDKQK 316
+ +SA+Q+ Q + I++ S+ D K
Sbjct: 309 DGWSASQMLTQLYQIIVFDDSIEDIHK 335
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 348 GGEGIVN-EDVLEVTGVIPNPWIEKLLKVDS-------FQVLEKYIEDLILEAYSATQLF 399
G EG++ + E+ GV+P+ + +L+K ++ + K + D++ + +SA+Q+
Sbjct: 258 GDEGVITVRTIEEIAGVVPDDIVNRLVKALQPKKARLPYEEVSKVVTDIVADGWSASQML 317
Query: 400 DQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 445
Q + I++ S+ D K I+ +E + RL DGA E++ ILDL
Sbjct: 318 TQLYQIIVFDDSIEDIHKNSIVMVFSEFDKRLIDGADEHLTILDLA 363
>gi|347524285|ref|YP_004781855.1| Replication factor C [Pyrolobus fumarii 1A]
gi|343461167|gb|AEM39603.1| Replication factor C [Pyrolobus fumarii 1A]
Length = 327
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 131/272 (48%), Positives = 172/272 (63%), Gaps = 14/272 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPKT+D+++ Q+E+V LKK + ++PH LF GPPGTGKT+ A H LFG+
Sbjct: 10 WAEKYRPKTLDEIVNQEEIVRRLKKFVEEKNMPHLLFVGPPGTGKTTAAHALAHDLFGEN 69
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
YR+ +LELNASD+RGI+ IR KVK FA+ P PFKIV+LDEAD+MT AQ
Sbjct: 70 YRQYMLELNASDERGIETIRTKVKEFARSRTP-------PGIPFKIVLLDEADNMTADAQ 122
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME T STRF LI NY S II+P+ SRC+ FRF PL + ++ RL++ICEQE
Sbjct: 123 QALRRLMEMYTASTRFILIANYPSKIIEPIQSRCAIFRFTPLKKEDVVARLKWICEQEGC 182
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
D +ALET+ E S GDMRRAI LQ+ A L + E V +V G+ I +++K+
Sbjct: 183 QYDEEALETIYEISEGDMRRAINILQAAAALG---KVTVEAVYKVVGLAHPKEIREIIKL 239
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFH 302
F K + +L++ S T + Q H
Sbjct: 240 ALDGRFTDARKKLRELMINYGLSGTDVIKQIH 271
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 8/127 (6%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+ALET+ E S GDMRRAI LQ+ A L + E V +V G+ I +++K+
Sbjct: 187 EALETIYEISEGDMRRAINILQAAAALG---KVTVEAVYKVVGLAHPKEIREIIKLALDG 243
Query: 377 SFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNARLQDG 434
F K + +L++ S T + Q H V L D+ + LI + E RL +G
Sbjct: 244 RFTDARKKLRELMINYGLSGTDVIKQIHKEVFGPELKLPDEVRVLIADYAGEIQFRLVEG 303
Query: 435 ASEYIQI 441
A + IQ+
Sbjct: 304 ADDEIQL 310
>gi|123482551|ref|XP_001323818.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
gi|121906690|gb|EAY11595.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
Length = 325
Score = 247 bits (630), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 132/291 (45%), Positives = 179/291 (61%), Gaps = 15/291 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD+++Q+E V LK L DLPH +F+GPPGTGKTS +A C LFG
Sbjct: 8 LPWVEKYRPKNLDDIVQQEEAVKALKTTLETGDLPHLIFHGPPGTGKTSLALALCRSLFG 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D +R R+ ELNASD+RGI +R +K FA +GK PFKIVILDEADSMT A
Sbjct: 68 DDFRLRVKELNASDERGIDAVRSSIKEFASLAVP----NGK--IPFKIVILDEADSMTSA 121
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +E + TRF +ICNYVS II P+ SRC+KFRFKPL ++ RL I E +
Sbjct: 122 AQNALRRIIETYSSVTRFIIICNYVSKIIDPILSRCAKFRFKPLDRPAIIERLHKIFEDQ 181
Query: 213 SVMCDFK-ALETLVETSGGDMRRAITCLQSCARL-KGGEGIVNEDVLEVTGVIPKP---- 266
++ D + ETLV SGGD+R+AIT QS A I +E + ++G P P
Sbjct: 182 NLSVDSEDTYETLVNISGGDLRKAITFAQSAASTCSLTRKITSEIITSISGA-PNPADVE 240
Query: 267 -WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ + L D + +E DL+ Y Q+F+ ++++ + + + +K
Sbjct: 241 NYFKTCLSAD-WDTIENATIDLVYAGYDIGQIFEILINLIVKTNEIPEAKK 290
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 8/125 (6%)
Query: 323 ETLVETSGGDMRRAITCLQSCARL-KGGEGIVNEDVLEVTGVIPNP-----WIEKLLKVD 376
ETLV SGGD+R+AIT QS A I +E + ++G PNP + + L D
Sbjct: 192 ETLVNISGGDLRKAITFAQSAASTCSLTRKITSEIITSISGA-PNPADVENYFKTCLSAD 250
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+ +E DL+ Y Q+F+ ++++ + + + +K ++ K+A+ + + + A
Sbjct: 251 -WDTIENATIDLVYAGYDIGQIFEILINLIVKTNEIPEAKKPELILKIAQADGAIINRAD 309
Query: 437 EYIQI 441
Q+
Sbjct: 310 PQFQL 314
>gi|339264352|ref|XP_003366698.1| hypothetical protein Tsp_15369 [Trichinella spiralis]
gi|316956812|gb|EFV46929.1| hypothetical protein Tsp_15369 [Trichinella spiralis]
Length = 235
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 118/184 (64%), Positives = 143/184 (77%), Gaps = 1/184 (0%)
Query: 70 LFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF 128
LFYGPPGTGKTS ++A C Q+FG ++YR+R+LELNASD+RGI VIRDKVK F+Q AS
Sbjct: 5 LFYGPPGTGKTSAILALCRQIFGSEIYRDRVLELNASDERGIDVIRDKVKLFSQFAASEI 64
Query: 129 NQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRC 188
+ GK CPP K+VILDEADSMT AQAALRRTME+E+K+TRFCLICNY+SCII+P+TSRC
Sbjct: 65 TEGGKKCPPLKMVILDEADSMTKQAQAALRRTMERESKTTRFCLICNYISCIIEPITSRC 124
Query: 189 SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG 248
+KFRFKPL + RL+ ICE ESV D AL +L+ GD+RRAI LQS A K
Sbjct: 125 AKFRFKPLTLEIQIERLRKICENESVSIDDAALSSLISFCDGDLRRAINTLQSAASFKDK 184
Query: 249 EGIV 252
+ I+
Sbjct: 185 KEII 188
>gi|115384904|ref|XP_001208999.1| activator 1 41 kDa subunit [Aspergillus terreus NIH2624]
gi|114196691|gb|EAU38391.1| activator 1 41 kDa subunit [Aspergillus terreus NIH2624]
Length = 319
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 131/281 (46%), Positives = 180/281 (64%), Gaps = 33/281 (11%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQT--- 124
LFYGPPGTGKTST++A LFG +YR RILELNASD+RGI ++RDK+K FA+
Sbjct: 1 MLFYGPPGTGKTSTILALAKSLFGPSLYRSRILELNASDERGIGIVRDKIKNFARSQLSH 60
Query: 125 ASGFNQD---GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCII 181
+SG +++ PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II
Sbjct: 61 SSGMSEEYLAQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRII 120
Query: 182 QPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
PL SRCSKFRFK L + RL++I + E++ + ++ L++ S GD+RRAIT +QS
Sbjct: 121 DPLASRCSKFRFKALDNSAAGERLEHIAKLENLTLESGVVDKLIQCSEGDLRRAITYMQS 180
Query: 242 CARLKGGEGIVNED-------------------VLEVTGVIPKPWIEKLLKV-------D 275
ARL G +G +D V E+ GVIP+ I++L K
Sbjct: 181 AARLVGAQGGNKKDGDEDSEMTDATPQPVTVRMVEEIAGVIPEEIIDRLAKAMQPVKIGS 240
Query: 276 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
S++ + K I D++ + +SATQL Q + V+ ++ D QK
Sbjct: 241 SYEAVSKVITDVVADGWSATQLLLQLYRRVVYNDAIPDIQK 281
Score = 81.3 bits (199), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 78/148 (52%), Gaps = 26/148 (17%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-------------------VLEVTG 362
++ L++ S GD+RRAIT +QS ARL G +G +D V E+ G
Sbjct: 160 VDKLIQCSEGDLRRAITYMQSAARLVGAQGGNKKDGDEDSEMTDATPQPVTVRMVEEIAG 219
Query: 363 VIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDK 415
VIP I++L K S++ + K I D++ + +SATQL Q + V+ ++ D
Sbjct: 220 VIPEEIIDRLAKAMQPVKIGSSYEAVSKVITDVVADGWSATQLLLQLYRRVVYNDAIPDI 279
Query: 416 QKALILEKLAECNARLQDGASEYIQILD 443
QK I+ +E + RL DGA E++ ILD
Sbjct: 280 QKNKIVMVFSEMDKRLSDGADEHLSILD 307
>gi|407929691|gb|EKG22503.1| ATPase AAA+ type core [Macrophomina phaseolina MS6]
Length = 342
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 132/299 (44%), Positives = 178/299 (59%), Gaps = 44/299 (14%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK++ DV Q V+VL + L ++LPH LFYGPPGTGKTST++A QL+G
Sbjct: 34 PWVEKYRPKSLSDVNGQDHTVTVLSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYGP 93
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTAS-------GFNQDGK-PCPPFKIVILD 144
++ R R+LELNASD+RGI ++R+KVK FA+Q S G + PCPPFKI+ILD
Sbjct: 94 ELLRTRVLELNASDERGIGIVREKVKNFARQQLSNPPAGPAGVEYKKRYPCPPFKIIILD 153
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EADSMT AQ+ALRRTME ++ TRFCL+CNYV+ II PL SRCSKFRFK L + R
Sbjct: 154 EADSMTQDAQSALRRTMETYSRITRFCLVCNYVTRIIDPLASRCSKFRFKSLDTGSAARR 213
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP 264
L+ I E V A+ LV V E+ GVIP
Sbjct: 214 LEEIAAAEGVRLGEGAVAALVRV----------------------------VEEIAGVIP 245
Query: 265 KPWIEKLL-------KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+E+L K + + + K +ED++ + +SA+Q+ Q +++V+ + D +K
Sbjct: 246 GGTMERLYEAMQPRTKGEVYNEVAKAVEDMVADGWSASQVVAQLYEMVLYDEKVEDLKK 304
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 16/136 (11%)
Query: 319 FKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN---EDVLEVTGVIPNPWIEKLL-- 373
FK+L+T G R + + + ++ GEG V V E+ GVIP +E+L
Sbjct: 202 FKSLDT------GSAARRLEEIAAAEGVRLGEGAVAALVRVVEEIAGVIPGGTMERLYEA 255
Query: 374 -----KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 428
K + + + K +ED++ + +SA+Q+ Q +++V+ + D +K I +E +
Sbjct: 256 MQPRTKGEVYNEVAKAVEDMVADGWSASQVVAQLYEMVLYDEKVEDLKKNKITLVFSEAD 315
Query: 429 ARLQDGASEYIQILDL 444
RL DGA E+++ILDL
Sbjct: 316 KRLVDGADEHLEILDL 331
>gi|378727800|gb|EHY54259.1| replication factor C subunit 2/4 [Exophiala dermatitidis
NIH/UT8656]
Length = 408
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 118/222 (53%), Positives = 154/222 (69%), Gaps = 6/222 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPWVEKYRPK++DDV Q+ L++ + A+LPH L +GPPGTGKTST++A C +LFG
Sbjct: 33 VPWVEKYRPKSLDDVKSQEHATETLRRMVHAANLPHLLLFGPPGTGKTSTILALCRELFG 92
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQ-----TASGFNQDGKPCPPFKIVILDEA 146
++ + R+ E+NASD+RG+ VIR+KVK FA Q S ++ PCPPFK+VILDEA
Sbjct: 93 PELMKTRVKEMNASDERGLTVIREKVKQFASQHLVSAPVSAEYREKYPCPPFKVVILDEA 152
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D++T AQ+ALRR +E +K+TRFCLI N+VS II P+ SRCSKFRFK L R+Q
Sbjct: 153 DALTTDAQSALRRIIENYSKTTRFCLIANFVSRIIAPIASRCSKFRFKSLEGPQASARIQ 212
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG 248
I E V + +E ++ S GD+RRAIT LQS ARL G
Sbjct: 213 DILNAEHVEYEDGVVERSLQVSDGDLRRAITLLQSAARLAGA 254
>gi|32451662|gb|AAH54598.1| Rfc4 protein [Danio rerio]
Length = 202
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 117/179 (65%), Positives = 144/179 (80%), Gaps = 1/179 (0%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+ +S S+ G+ + + VPWVEKYRPK +D+V Q+EVV+VLKK
Sbjct: 1 MQAFLKGSSSQSVKAQKPSSSSSSGGEKKQRAVPWVEKYRPKCVDEVAFQEEVVAVLKKS 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
L GADLP+ LFYGPPGTGKTST++AA +L+G D+YR+R+LELNASD+RGIQV+R+KVK
Sbjct: 61 LEGADLPNLLFYGPPGTGKTSTILAAARELYGPDLYRQRVLELNASDERGIQVVREKVKR 120
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS 178
FAQ T +G DGK CPPFKI+ILDEADSMT AAQAALRRTMEKE+++TRFCLICNYVS
Sbjct: 121 FAQLTVAGTRPDGKTCPPFKIIILDEADSMTSAAQAALRRTMEKESRTTRFCLICNYVS 179
>gi|71033715|ref|XP_766499.1| replication factor C subunit 2 [Theileria parva strain Muguga]
gi|68353456|gb|EAN34216.1| replication factor C subunit 2, putative [Theileria parva]
Length = 335
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 126/293 (43%), Positives = 186/293 (63%), Gaps = 8/293 (2%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K VPWVEKYRPK I DVI Q + VS++++ + ++PH +F+GPPGTGKTS +A Q+
Sbjct: 5 KDVPWVEKYRPKKISDVIFQTQAVSIMEQIVETFNMPHMIFHGPPGTGKTSAALAMARQI 64
Query: 91 FG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN---QDGKPCPPFKIVILDEA 146
+G + RER+LELNASD+RGI V+RD++KT+ + S + + P +K++ILDEA
Sbjct: 65 YGLEGMRERVLELNASDERGIDVVRDRIKTYTRINISNNRVNPETNRVMPNYKMIILDEA 124
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D +T AQAALRR +E + +RF LICNY+ II P+ SRCS F FKP+ N+ + RL+
Sbjct: 125 DMITADAQAALRRVIENYSSISRFVLICNYLHKIIGPIYSRCSVFHFKPIETNSQVDRLK 184
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP 266
YIC QE + D KALE L S GDMR++IT LQS A L I + V+G PK
Sbjct: 185 YICNQEGITFDQKALEFLTTVSSGDMRKSITILQSTACLYN--EITENAINSVSGKPPKE 242
Query: 267 WIEKLLKV--DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
+E++ +V + +E ++++ + + + +F Q + V+ + D +K+
Sbjct: 243 VVERIFEVCKNPEGDVESVCKEVVYDGWDISAIFQQISEYVVECDFIGDIEKS 295
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 16/185 (8%)
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALF-------- 319
IE + F ++ Y+ +I YS +F H + +S D+ K +
Sbjct: 139 IENYSSISRFVLICNYLHKIIGPIYSRCSVF---HFKPIETNSQVDRLKYICNQEGITFD 195
Query: 320 -KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV--D 376
KALE L S GDMR++IT LQS A L I + V+G P +E++ +V +
Sbjct: 196 QKALEFLTTVSSGDMRKSITILQSTACLYN--EITENAINSVSGKPPKEVVERIFEVCKN 253
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+E ++++ + + + +F Q + V+ + D +K+ I +LA + L G S
Sbjct: 254 PEGDVESVCKEVVYDGWDISAIFQQISEYVVECDFIGDIEKSKISLELANRDFALLQGGS 313
Query: 437 EYIQI 441
+Y Q+
Sbjct: 314 QYFQL 318
>gi|123493043|ref|XP_001326199.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
gi|121909110|gb|EAY13976.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
Length = 325
Score = 244 bits (623), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 128/289 (44%), Positives = 177/289 (61%), Gaps = 11/289 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD+++Q+E V LK L DLPH +F+GPPGTGKTS +A C LFG
Sbjct: 8 LPWVEKYRPKNLDDIVQQEEAVKALKTTLETGDLPHLIFHGPPGTGKTSLALALCRSLFG 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ +R R+ ELNASD+RGI +R VK FA +GK PFKIVILDEADSMT A
Sbjct: 68 EDFRLRVKELNASDERGIDAVRSSVKEFASLAVP----NGK--IPFKIVILDEADSMTSA 121
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +E + TRF +ICNYVS II P+ SRC+KFRFKPL ++ RL I + +
Sbjct: 122 AQNALRRIIETYSAVTRFIIICNYVSKIIDPILSRCAKFRFKPLDRPAIIQRLHKIFDDQ 181
Query: 213 SVMCDF-KALETLVETSGGDMRRAITCLQSCARL-KGGEGIVNEDVLEVTGVIPKPWIEK 270
++ D + ETLV+ SGGD+R+AIT QS A I +E + ++G +E
Sbjct: 182 NLSVDKEETFETLVDISGGDLRKAITFAQSAASTCIETRKITSEIITSISGAANPSDVEN 241
Query: 271 LLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ +E DL+ Y +Q+F+ +++ ++ + + +K
Sbjct: 242 YFHTCLSADWDTIENATTDLVYAGYDISQIFEILISLIVKSNEIPEAKK 290
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 72/140 (51%), Gaps = 9/140 (6%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARL-KGGEGIVNEDVLEVTGVIPNP-----WIEKLL 373
+ ETLV+ SGGD+R+AIT QS A I +E + ++G NP + L
Sbjct: 189 ETFETLVDISGGDLRKAITFAQSAASTCIETRKITSEIITSISGA-ANPSDVENYFHTCL 247
Query: 374 KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQD 433
D + +E DL+ Y +Q+F+ +++ ++ + + +K ++ K+A+ + + +
Sbjct: 248 SAD-WDTIENATTDLVYAGYDISQIFEILISLIVKSNEIPEAKKPQLILKIAQADGSIIN 306
Query: 434 GASEYIQILDLGSIVIKANK 453
A Q+L + S I+A+K
Sbjct: 307 RADPQFQLLGI-SASIRASK 325
>gi|302925691|ref|XP_003054145.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735086|gb|EEU48432.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 314
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 131/277 (47%), Positives = 180/277 (64%), Gaps = 30/277 (10%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ----Q 123
LFYGPPGTGKTST++A +L+G +M + R+LELNASD+RGI ++R+KVK FA+
Sbjct: 1 MLFYGPPGTGKTSTVLALAKELYGPEMIKSRVLELNASDERGISIVREKVKNFARMQLTN 60
Query: 124 TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183
+ G+ +D PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II P
Sbjct: 61 PSPGY-KDKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDP 119
Query: 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
L SRCSKFRFK L ++ RL+ I E+E V + A++TL++ S GD+R+AIT LQS A
Sbjct: 120 LASRCSKFRFKSLDQSNAKKRLEEIAEKEGVPLEDGAVDTLIKCSEGDLRKAITFLQSAA 179
Query: 244 RLKG---------GEGIVNED--------VLEVTGVIPKPWIEKLLKV-------DSFQV 279
RL G G ++ D V ++ GVIP+ IE L++ S+Q
Sbjct: 180 RLVGAGTPEKDADGADTMDVDKKAVTVKIVEDIAGVIPESTIEDLVQAIRPKSSGPSYQN 239
Query: 280 LEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ K +ED++ + +SA Q+ Q + + ++ D QK
Sbjct: 240 VSKVVEDMVADGWSAGQVVGQLYQALTFDETIPDPQK 276
Score = 79.0 bits (193), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 24/149 (16%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKG---------GEGIVNED--------VLEVTGV 363
A++TL++ S GD+R+AIT LQS ARL G G ++ D V ++ GV
Sbjct: 156 AVDTLIKCSEGDLRKAITFLQSAARLVGAGTPEKDADGADTMDVDKKAVTVKIVEDIAGV 215
Query: 364 IPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQ 416
IP IE L++ S+Q + K +ED++ + +SA Q+ Q + + ++ D Q
Sbjct: 216 IPESTIEDLVQAIRPKSSGPSYQNVSKVVEDMVADGWSAGQVVGQLYQALTFDETIPDPQ 275
Query: 417 KALILEKLAECNARLQDGASEYIQILDLG 445
K I+ +E + RL DGA E++ ILDL
Sbjct: 276 KNKIVLIFSEVDKRLVDGADEHLSILDLA 304
>gi|156093657|ref|XP_001612867.1| replication factor C subunit 2 [Plasmodium vivax Sal-1]
gi|148801741|gb|EDL43140.1| replication factor C subunit 2, putative [Plasmodium vivax]
Length = 330
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 126/309 (40%), Positives = 193/309 (62%), Gaps = 14/309 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD++ Q VS+LK+ + ++PH +F+GPPGTGKTS + A H+LFG
Sbjct: 4 LPWVEKYRPKKLDDIVHQTNAVSMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFG 63
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF---NQDGKPCPPFKIVILDEADS 148
D ER+LELNASDDRGI V+R+K+K + + + S ++ + PP+K+V+LDEAD
Sbjct: 64 RDNISERVLELNASDDRGINVVREKIKAYTRISISKNKINSETNETLPPWKLVVLDEADM 123
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRR +E + TRF LICNY+ I P+ SRCS +RF+ + N +L YI
Sbjct: 124 MTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPINIKKDKLLYI 183
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWI 268
C+ E + AL+ ++ET+ GD+RRA++ LQ C+ + I E VL+V+G+ I
Sbjct: 184 CKSEGINILDDALDKIIETTQGDLRRAVSILQLCSCI--DPMITLESVLDVSGLPADDII 241
Query: 269 EKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETL 325
K++ K+ + +EK ++D+I + Y +F ++ ++ + D K+ + L
Sbjct: 242 SKIIDACKMKDLKNVEKAVQDVIEDGYDVAYIFKSLNNYFVMNTEYQDSVKS-----QIL 296
Query: 326 VETSGGDMR 334
+E S D R
Sbjct: 297 LELSRHDYR 305
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 76/131 (58%), Gaps = 5/131 (3%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDS 377
AL+ ++ET+ GD+RRA++ LQ C+ + I E VL+V+G+ + I K++ K+
Sbjct: 195 ALDKIIETTQGDLRRAVSILQLCSCI--DPMITLESVLDVSGLPADDIISKIIDACKMKD 252
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
+ +EK ++D+I + Y +F ++ + + D K+ IL +L+ + RL GA++
Sbjct: 253 LKNVEKAVQDVIEDGYDVAYIFKSLNNYFVMNTEYQDSVKSQILLELSRHDYRLHSGATK 312
Query: 438 YIQILDLGSIV 448
YIQ++ S V
Sbjct: 313 YIQLMSFASSV 323
>gi|296241869|ref|YP_003649356.1| replication factor C small subunit [Thermosphaera aggregans DSM
11486]
gi|296094453|gb|ADG90404.1| replication factor C small subunit [Thermosphaera aggregans DSM
11486]
Length = 325
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 124/228 (54%), Positives = 153/228 (67%), Gaps = 10/228 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP+T+D+V+ Q E+V+ LKK +S ++PH LF GPPGTGKT+ H L+GD
Sbjct: 8 WTEKYRPRTLDEVVNQSEIVARLKKFVSDKNMPHMLFAGPPGTGKTTMAHCLAHDLYGDN 67
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
YR+ ILELNASD+RGI+VIR KVK FA+ G PFKI++LDEAD+MT AQ
Sbjct: 68 YRQYILELNASDERGIEVIRSKVKEFARTRVVG-------NVPFKIILLDEADNMTADAQ 120
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME T STRF LI NY S II+P+ SR + FRF PL ++ RL+YIC E V
Sbjct: 121 QALRRLMELYTASTRFILIANYPSKIIEPIQSRTAVFRFTPLKREDVVERLKYICSNEKV 180
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
C AL T+ E S GDMRRAI LQ+ A L GE V E+V +V G+
Sbjct: 181 KCHEDALNTIFELSEGDMRRAINILQASAAL--GEATV-ENVYKVVGL 225
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Query: 312 SDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK 371
++K K AL T+ E S GDMRRAI LQ+ A L GE V E+V +V G+ + +
Sbjct: 177 NEKVKCHEDALNTIFELSEGDMRRAINILQASAAL--GEATV-ENVYKVVGLAHPREVRE 233
Query: 372 LLKV----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAE 426
++++ + + K +I S + Q H + S+ + D+ K +I + + E
Sbjct: 234 MIQLALSGNFAEARNKLRTLMITYGLSGVDVVKQIHKEIFSSDIKIPDEIKIVIADLVGE 293
Query: 427 CNARLQDGASEYIQ 440
RL +GA + IQ
Sbjct: 294 IQFRLVEGADDEIQ 307
>gi|340056431|emb|CCC50763.1| putative replication factor C, subunit 3 [Trypanosoma vivax Y486]
Length = 374
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 125/285 (43%), Positives = 174/285 (61%), Gaps = 9/285 (3%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
+R +PWVEKYRP T+D+V+ +E++S ++ + +PHFLFYGPPGTGKT+T+ A
Sbjct: 33 SRTGSLPWVEKYRPSTLDEVVAHEEILSTTRRLIDSGSMPHFLFYGPPGTGKTTTVKACA 92
Query: 88 HQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
H LFG + R +LE+NASDDRGI V+R +V+ FA ++ P FK+VILDEA
Sbjct: 93 HYLFGKERVRANVLEMNASDDRGIDVVRQQVREFASTSSIFCTNSSNPVSSFKLVILDEA 152
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D M+ AQAALRR +EK TK+ RFC+ICN ++ II L SRC++FRF P+ + ML RL+
Sbjct: 153 DQMSGDAQAALRRIIEKYTKNVRFCIICNRINKIIPALQSRCTRFRFAPVKKGAMLPRLK 212
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP 266
++ ++E V + L GDMRR + +QS A + GE + E V TG P P
Sbjct: 213 FVVQEEGVRFTEEGLAAAFRLCNGDMRRCLNIMQSSA-MSAGE-VTEESVYRTTGN-PTP 269
Query: 267 W-----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
+E +L D EK + +I + SAT L + H IVM
Sbjct: 270 AEVRGIVEDMLAHDYALSWEKMQQAVIEKGVSATDLVREVHHIVM 314
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 330 GGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-----IEKLLKVDSFQVLEKY 384
GDMRR + +QS A + GE + E V TG P P +E +L D EK
Sbjct: 235 NGDMRRCLNIMQSSA-MSAGE-VTEESVYRTTGN-PTPAEVRGIVEDMLAHDYALSWEKM 291
Query: 385 IEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
+ +I + SAT L + H IVM A L K +L KLA+ G E I I
Sbjct: 292 QQAVIEKGVSATDLVREVHHIVM-AMDLPVDCKCFLLTKLADVEYYAASGTRESINI 347
>gi|403221343|dbj|BAM39476.1| replication factor C subunit [Theileria orientalis strain Shintoku]
Length = 336
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 128/296 (43%), Positives = 185/296 (62%), Gaps = 13/296 (4%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K VPWVEKYRPK + DVI Q + VS++++ + ++PH +F+GPPGTGKTS +A Q+
Sbjct: 5 KDVPWVEKYRPKKLSDVIFQTQAVSIMEQIIETFNMPHMIFHGPPGTGKTSAALAMARQI 64
Query: 91 FG-DMYRERILELNASDDRG-IQVIRDKVKTFAQQTASGFN---QDGKPCPPFKIVILDE 145
+G + RER+LELNASD+RG I V+RD++KT+ + S + + P +KI+ILDE
Sbjct: 65 YGLEGMRERVLELNASDERGRIDVVRDRIKTYTRINISNNKINPETNRVMPNYKIIILDE 124
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD +T AQAALRR +E + +RF LICNY+ II P+ SRCS F FKP+ ++ + RL
Sbjct: 125 ADMITADAQAALRRVIENYSGISRFILICNYLHKIIGPIYSRCSVFHFKPIDTSSQVKRL 184
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPK 265
+YIC +E + D KALE L + S GDMR+ IT LQS A L I V V+G P+
Sbjct: 185 EYICSKEGIKYDTKALEFLTKVSSGDMRKGITILQSTASLYN--EITENAVYSVSGQPPR 242
Query: 266 PWIEKLL----KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
+E++ K D +E D++ E + + +F Q D V+ + ++ D K+
Sbjct: 243 SLVERIFEECRKKDG--DVEAMCRDIVHEGWDVSAIFQQICDYVVNSDAIGDVDKS 296
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 85/185 (45%), Gaps = 16/185 (8%)
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDI-----VMLASSLSDKQKALF--K 320
IE + F ++ Y+ +I YS +F F I V + K+ + K
Sbjct: 140 IENYSGISRFILICNYLHKIIGPIYSRCSVF-HFKPIDTSSQVKRLEYICSKEGIKYDTK 198
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL----KVD 376
ALE L + S GDMR+ IT LQS A L I V V+G P +E++ K D
Sbjct: 199 ALEFLTKVSSGDMRKGITILQSTASLYNE--ITENAVYSVSGQPPRSLVERIFEECRKKD 256
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+E D++ E + + +F Q D V+++ ++ D K+ I +LA + L G S
Sbjct: 257 G--DVEAMCRDIVHEGWDVSAIFQQICDYVVNSDAIGDVDKSKISLELAHRDYALLQGGS 314
Query: 437 EYIQI 441
+Y Q+
Sbjct: 315 QYFQL 319
>gi|390371040|dbj|GAB64921.1| replication factor C subunit 2 [Plasmodium cynomolgi strain B]
Length = 342
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 126/309 (40%), Positives = 192/309 (62%), Gaps = 14/309 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD++ Q VS+LK+ + ++PH +F+GPPGTGKTS + A H+LFG
Sbjct: 16 LPWVEKYRPKKLDDIVHQTNAVSMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFG 75
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF---NQDGKPCPPFKIVILDEADS 148
D ER+LELNASDDRGI V+R+K+K + + + S ++ + PP+K+V+LDEAD
Sbjct: 76 RDNISERVLELNASDDRGINVVREKIKAYTRISISKNKINSETNETLPPWKLVVLDEADM 135
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRR +E + TRF LICNY+ I P+ SRCS +RF+ + N +L YI
Sbjct: 136 MTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPINIKKEKLLYI 195
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWI 268
C+ E + AL ++ET+ GD+RRA++ LQ C+ + I E VL+V+G+ I
Sbjct: 196 CKSEGINILDDALGKIIETTQGDLRRAVSILQLCSCI--DPMITLESVLDVSGLPADDII 253
Query: 269 EKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETL 325
K++ K+ + +EK ++D+I + Y +F ++ ++ + D K+ + L
Sbjct: 254 SKIIDACKMKDLKNVEKAVQDIIEDGYDVAYIFKSLNNYFVMNTEYQDSVKS-----QIL 308
Query: 326 VETSGGDMR 334
+E S D R
Sbjct: 309 LELSRHDYR 317
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 75/131 (57%), Gaps = 5/131 (3%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDS 377
AL ++ET+ GD+RRA++ LQ C+ + I E VL+V+G+ + I K++ K+
Sbjct: 207 ALGKIIETTQGDLRRAVSILQLCSCI--DPMITLESVLDVSGLPADDIISKIIDACKMKD 264
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
+ +EK ++D+I + Y +F ++ + + D K+ IL +L+ + RL GA++
Sbjct: 265 LKNVEKAVQDIIEDGYDVAYIFKSLNNYFVMNTEYQDSVKSQILLELSRHDYRLHSGATK 324
Query: 438 YIQILDLGSIV 448
YIQ++ S V
Sbjct: 325 YIQLMSFASSV 335
>gi|221052961|ref|XP_002257855.1| replication factor C, subunit 2 [Plasmodium knowlesi strain H]
gi|193807687|emb|CAQ38391.1| replication factor C, subunit 2, putative [Plasmodium knowlesi
strain H]
Length = 330
Score = 241 bits (616), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 125/309 (40%), Positives = 193/309 (62%), Gaps = 14/309 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD++ Q VS+LK+ + ++PH +F+GPPGTGKTS + A H+LFG
Sbjct: 4 LPWVEKYRPKKLDDIVHQTNAVSMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFG 63
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF---NQDGKPCPPFKIVILDEADS 148
D ER+LELNASDDRGI V+R+K+K + + + S ++ + PP+K+V+LDEAD
Sbjct: 64 RDNISERVLELNASDDRGINVVREKIKAYTRISISKNKINSETNETLPPWKLVVLDEADM 123
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRR +E + TRF LICNY+ I P+ SRCS +RF+ + + +L YI
Sbjct: 124 MTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPIDVKKEKLLYI 183
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWI 268
C+ E + AL+ ++ET+ GD+RRA++ LQ C+ + I E VL+V+G+ I
Sbjct: 184 CKSEGINILDDALDKIIETTQGDLRRAVSILQLCSCI--DPMITLESVLDVSGLPADDII 241
Query: 269 EKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETL 325
K++ K+ + +EK ++D+I + Y +F ++ ++ + D K+ + L
Sbjct: 242 SKIIDACKMKDLKNVEKAVQDIIEDGYDVAYIFKSLNNYFVMNTEYQDSVKS-----QIL 296
Query: 326 VETSGGDMR 334
+E S D R
Sbjct: 297 LELSRHDYR 305
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 76/131 (58%), Gaps = 5/131 (3%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDS 377
AL+ ++ET+ GD+RRA++ LQ C+ + I E VL+V+G+ + I K++ K+
Sbjct: 195 ALDKIIETTQGDLRRAVSILQLCSCI--DPMITLESVLDVSGLPADDIISKIIDACKMKD 252
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
+ +EK ++D+I + Y +F ++ + + D K+ IL +L+ + RL GA++
Sbjct: 253 LKNVEKAVQDIIEDGYDVAYIFKSLNNYFVMNTEYQDSVKSQILLELSRHDYRLHSGATK 312
Query: 438 YIQILDLGSIV 448
YIQ++ S V
Sbjct: 313 YIQLMSFASSV 323
>gi|322705612|gb|EFY97196.1| activator 1 41 kDa subunit [Metarhizium anisopliae ARSEF 23]
Length = 314
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 129/277 (46%), Positives = 176/277 (63%), Gaps = 30/277 (10%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ----Q 123
LFYGPPGTGKTST++A +LFG +M + R+LELNASD+RGI ++R+KVK FA+
Sbjct: 1 MLFYGPPGTGKTSTILALAKELFGPEMMKSRVLELNASDERGISIVREKVKNFARMQLTN 60
Query: 124 TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183
A G+++ PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II P
Sbjct: 61 PAPGYSKK-YPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDP 119
Query: 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
L SRCSKFRFK L + RL+ I E V + A++ L+ S GD+R+AIT LQS A
Sbjct: 120 LASRCSKFRFKSLDQGNARKRLEEIASAEGVPLEDGAIDALIRCSEGDLRKAITFLQSAA 179
Query: 244 RLKG-------GEGIVNED----------VLEVTGVIPKPWIEKLLKV-------DSFQV 279
RL G G+G D V ++ GVIP P I+ L++ +++
Sbjct: 180 RLVGASAPGKDGDGDEQMDVDSKPVTVKIVEDIAGVIPAPTIDGLVEALRPRDAGQTYRS 239
Query: 280 LEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ K +ED++ + +SATQ+ Q + + +++D K
Sbjct: 240 VSKIVEDMVADGWSATQVVSQLYQALTADETIADAHK 276
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 81/149 (54%), Gaps = 24/149 (16%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKG-------GEGIVNEDV----------LEVTGV 363
A++ L+ S GD+R+AIT LQS ARL G G+G DV ++ GV
Sbjct: 156 AIDALIRCSEGDLRKAITFLQSAARLVGASAPGKDGDGDEQMDVDSKPVTVKIVEDIAGV 215
Query: 364 IPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQ 416
IP P I+ L++ +++ + K +ED++ + +SATQ+ Q + + + +++D
Sbjct: 216 IPAPTIDGLVEALRPRDAGQTYRSVSKIVEDMVADGWSATQVVSQLYQALTADETIADAH 275
Query: 417 KALILEKLAECNARLQDGASEYIQILDLG 445
K I+ +E + RL DGA E++ ILDL
Sbjct: 276 KNKIVMVFSEVDKRLVDGADEHLSILDLA 304
>gi|380471924|emb|CCF47039.1| replication factor C subunit 2 [Colletotrichum higginsianum]
Length = 315
Score = 241 bits (614), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 128/274 (46%), Positives = 177/274 (64%), Gaps = 26/274 (9%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG 127
LFYGPPGTGKTST++A +L+G +M + R+LELNASD+RGI ++R+KVK FA+ +
Sbjct: 1 MLFYGPPGTGKTSTVLALAKELYGPEMMKSRVLELNASDERGISIVREKVKDFARMQLTN 60
Query: 128 FNQDGK---PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPL 184
D K PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL
Sbjct: 61 PTNDYKKRYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPL 120
Query: 185 TSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244
SRCSKFRFK L + RL+ I E E V + AL+ L++ S GD+R+AIT LQS AR
Sbjct: 121 ASRCSKFRFKSLDQGNAKKRLEDIAENEGVQLEDGALDALIKCSEGDLRKAITFLQSAAR 180
Query: 245 LKG-GEGIVNED--------------VLEVTGVIPKPWIEKLLKV-------DSFQVLEK 282
L G G+ + D + ++ GVIP+ I++L+ D++Q + K
Sbjct: 181 LVGAGDKDASRDDAMDIDKKPVTVKIIEDIAGVIPENTIDELVSSIRPQGPGDTYQNVAK 240
Query: 283 YIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+E+++ + +SA Q+ Q + ++ ++ D QK
Sbjct: 241 VVENMVADGWSAGQVVTQLYQAIVYDETVPDVQK 274
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 81/147 (55%), Gaps = 22/147 (14%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKG-GEGIVNED--------------VLEVTGVIP 365
AL+ L++ S GD+R+AIT LQS ARL G G+ + D + ++ GVIP
Sbjct: 156 ALDALIKCSEGDLRKAITFLQSAARLVGAGDKDASRDDAMDIDKKPVTVKIIEDIAGVIP 215
Query: 366 NPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKA 418
I++L+ D++Q + K +E+++ + +SA Q+ Q + ++ ++ D QK
Sbjct: 216 ENTIDELVSSIRPQGPGDTYQNVAKVVENMVADGWSAGQVVTQLYQAIVYDETVPDVQKN 275
Query: 419 LILEKLAECNARLQDGASEYIQILDLG 445
I+ +E + RL DGA E++ ILDL
Sbjct: 276 KIVLIFSEVDKRLVDGADEHLSILDLA 302
>gi|15920690|ref|NP_376359.1| replication factor C small subunit [Sulfolobus tokodaii str. 7]
gi|42559516|sp|Q975D3.1|RFCS_SULTO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|342306208|dbj|BAK54297.1| replication factor C small subunit [Sulfolobus tokodaii str. 7]
Length = 327
Score = 240 bits (613), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 126/274 (45%), Positives = 175/274 (63%), Gaps = 14/274 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+ W EKYRP+++DD++ Q+++V LK+ + ++PH LF GPPGTGKT+ +A H L+G
Sbjct: 7 ILWAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLYG 66
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D YR+ LELNASD+RGI VIR+KVK FA+ A G PFK+V+LDEAD+MT
Sbjct: 67 DNYRQYFLELNASDERGIDVIRNKVKEFARTVAGG-------NVPFKVVLLDEADNMTAD 119
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME T++TRF L CNY+S II+P+ SR + FRF PL + ++ RL YI + E
Sbjct: 120 AQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLAYIAKNE 179
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI-PKPWIEKL 271
V D KALET+ + + GDMR+AI LQ+ + + G + E V +V G+ PK E +
Sbjct: 180 KVEYDQKALETIYDITQGDMRKAINILQASS-VYG--KVTVEAVYKVLGLAQPKEIREMI 236
Query: 272 ---LKVDSFQVLEKYIEDLILEAYSATQLFDQFH 302
L+ + + EK E L+ S + Q H
Sbjct: 237 MLALQGNFLKAREKLRELLVNYGLSGEDIIKQIH 270
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 14/170 (8%)
Query: 283 YIEDLILEAYSATQLFDQF----HDIVMLASSLSDKQKALF--KALETLVETSGGDMRRA 336
Y+ +I S T LF + D+V + ++ +K + KALET+ + + GDMR+A
Sbjct: 143 YLSKIIEPIQSRTALFRFYPLKKEDVVARLAYIAKNEKVEYDQKALETIYDITQGDMRKA 202
Query: 337 ITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL----LKVDSFQVLEKYIEDLILEA 392
I LQ+ + + G + E V +V G+ I ++ L+ + + EK E L+
Sbjct: 203 INILQASS-VYG--KVTVEAVYKVLGLAQPKEIREMIMLALQGNFLKAREKLRELLVNYG 259
Query: 393 YSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
S + Q H ++ + ++ D K L+++ + E R+ +GA + IQ+
Sbjct: 260 LSGEDIIKQIHREVTGNEINIPDDLKVLLVDYIGEVEYRIMEGADDEIQL 309
>gi|305663891|ref|YP_003860179.1| replication factor C small subunit [Ignisphaera aggregans DSM
17230]
gi|304378460|gb|ADM28299.1| replication factor C small subunit [Ignisphaera aggregans DSM
17230]
Length = 323
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 120/228 (52%), Positives = 154/228 (67%), Gaps = 10/228 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPKT+ +++ Q+E+V+ L K + ++PH LF GPPGTGKT+ +A H L+GD
Sbjct: 5 WAEKYRPKTLREIVNQEEIVNRLMKFVEEKNMPHLLFAGPPGTGKTTAALALAHDLYGDE 64
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R +LELNASD+RGI VIR KVK FA+ G PFKIVILDEAD+MT AQ
Sbjct: 65 WRRYLLELNASDERGIAVIRSKVKEFARSKLPG-------DIPFKIVILDEADNMTADAQ 117
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF LI NY S II P+ SRC+ FRF PL + +RL++ICEQE V
Sbjct: 118 QALRRIMEMYVETTRFILIANYPSKIIDPIQSRCASFRFTPLKREDVTSRLRWICEQEKV 177
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
CD L+ + E SGGDMR+AI LQS + L GE V+ +V +V G+
Sbjct: 178 KCDEDGLDVIYELSGGDMRKAINILQSASAL--GEVTVS-NVYKVVGL 222
Score = 43.9 bits (102), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 68/129 (52%), Gaps = 14/129 (10%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQV 380
L+ + E SGGDMR+AI LQS + L GE V+ +V +V G + +P +++ ++ + +
Sbjct: 183 GLDVIYELSGGDMRKAINILQSASAL--GEVTVS-NVYKVVG-LAHP--KEVREIITLAL 236
Query: 381 LEKYIED-------LILEAYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNARLQ 432
K+IE +I+ S + Q H + SA + + + ++ + + E R+
Sbjct: 237 SGKFIEARDKLHNLMIVYGLSGVDIIKQMHREIFSADLKIPEDIRVILADYIGEIQFRIV 296
Query: 433 DGASEYIQI 441
+GA + IQ+
Sbjct: 297 EGADDEIQL 305
>gi|389860407|ref|YP_006362646.1| replication factor C small subunit [Thermogladius cellulolyticus
1633]
gi|388525310|gb|AFK50508.1| replication factor C small subunit [Thermogladius cellulolyticus
1633]
Length = 334
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 122/240 (50%), Positives = 164/240 (68%), Gaps = 10/240 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP+T+D+V+ Q+EVV+ LKK + ++PH LF GPPGTGKT+ H L+GD
Sbjct: 16 WAEKYRPRTLDEVVNQKEVVARLKKFVEEKNMPHLLFAGPPGTGKTTLAHCLAHDLYGDN 75
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
YR+ +LELNASD+RGI VIR KVK FA+ +G PFKI++LDEAD+MT AQ
Sbjct: 76 YRQYMLELNASDERGIDVIRSKVKEFARTRVAG-------EVPFKIILLDEADNMTADAQ 128
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME T +TRF LI NY S II+P+ SRC+ FRF PL+ ++ RL+YI E+E+V
Sbjct: 129 QALRRLMELYTATTRFILIANYPSKIIEPIQSRCAVFRFTPLSREDVVERLKYIAEKENV 188
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
+ +ALET+ E S GDMR+AI LQ+ + L GE V E V +V G+ + ++L++
Sbjct: 189 KYNTEALETIHELSEGDMRKAINILQAASAL--GEVTV-EAVYKVVGLAHPKEVRQMLQL 245
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 76/146 (52%), Gaps = 10/146 (6%)
Query: 303 DIVMLASSLSDKQKALF--KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 360
D+V +++K+ + +ALET+ E S GDMR+AI LQ+ + L GE V E V +V
Sbjct: 174 DVVERLKYIAEKENVKYNTEALETIHELSEGDMRKAINILQAASAL--GEVTV-EAVYKV 230
Query: 361 TGVIPNPWIEKLLKV---DSFQVLEKYIEDLILE-AYSATQLFDQFH-DIVMSASSLSDK 415
G+ + ++L++ +F + +L+L S + Q H +I S LSD+
Sbjct: 231 VGLAHPKEVRQMLQLALSGNFTEARSKLRELMLNYGLSGLDIIRQIHREIFSSDIKLSDE 290
Query: 416 QKALILEKLAECNARLQDGASEYIQI 441
+ +I + E RL +GA + IQ+
Sbjct: 291 ARIMIADYAGEIQFRLVEGADDEIQL 316
>gi|71662047|ref|XP_818036.1| replication factor C, subunit 3 [Trypanosoma cruzi strain CL
Brener]
gi|70883263|gb|EAN96185.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/294 (42%), Positives = 182/294 (61%), Gaps = 15/294 (5%)
Query: 23 STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
ST ++ +PWVEKYRP T+D+V+ ++++S ++ + +LPH LFYGPPGTGKT+T
Sbjct: 8 STGHAAKSSTLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTT 67
Query: 83 MIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP---- 137
+ A + LFG D R +LE+NASDDRGI V+R +V+ FA + S F P P
Sbjct: 68 IKACAYYLFGKDRIRANVLEMNASDDRGIDVVRQQVREFA--STSSFYFASAPAAPTIAA 125
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
FK+VILDEAD M+ AQAALRR +EK TK+ RFC++CN+++ II L SRC++FRF P+
Sbjct: 126 FKLVILDEADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVK 185
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
++ ML+RL+++ ++E V + L S GD+RR + LQ+ A + GE I E V
Sbjct: 186 KSAMLSRLKFVAQEEGVRFTDEGLVAAFRLSNGDLRRCLNTLQASA-MSAGE-ITEESVY 243
Query: 258 EVTGVIPKPW-----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
VTG P P +E ++ D EK + + + S+T L + H IVM
Sbjct: 244 RVTGN-PTPADVRGIVEDMIAHDFAASWEKVHQTVSEKGVSSTDLVREVHHIVM 296
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 329 SGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-----IEKLLKVDSFQVLEK 383
S GD+RR + LQ+ A + GE I E V VTG P P +E ++ D EK
Sbjct: 216 SNGDLRRCLNTLQASA-MSAGE-ITEESVYRVTGN-PTPADVRGIVEDMIAHDFAASWEK 272
Query: 384 YIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
+ + + S+T L + H IVM A L + K +L KLA+ GA E
Sbjct: 273 VHQTVSEKGVSSTDLVREVHHIVM-AMDLPQESKCFLLMKLADVEYYAAGGAKE 325
>gi|30913228|sp|O74111.1|RFC3_ARXAD RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3; AltName: Full=Activator 1 subunit 3
gi|3367626|emb|CAA07618.1| replication factor C subunit [Blastobotrys adeninivorans]
Length = 338
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 123/249 (49%), Positives = 164/249 (65%), Gaps = 16/249 (6%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTS 81
V T K N +PWVEKYRP T+D+V + V++ +KK + LPH LF+GPPGTGKT+
Sbjct: 7 VETVEKQENS-LPWVEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTT 65
Query: 82 TMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPCPPF 138
T+IA Q++G YR ILELNASD+RGI V+RD++KTFA Q +SG F
Sbjct: 66 TIIAVARQIYGKNYRNMILELNASDERGIDVVRDQIKTFASTRQIFSSG----------F 115
Query: 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAE 198
K+VILDEAD+MT+AAQ ALRR +EK + TRFC++ NY + L SRC++FRF PL E
Sbjct: 116 KLVILDEADAMTNAAQNALRRIIEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKE 175
Query: 199 NTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKGGEGIVNEDVL 257
+ + RL ++ EQESV +A ++L+ S GDMRRA+ LQ+C A + GE I E V
Sbjct: 176 DAIKHRLAHVIEQESVDLSPEAFQSLLHLSSGDMRRALNVLQACYASVDAGEQISEELVY 235
Query: 258 EVTGVIPKP 266
+ G P+P
Sbjct: 236 DCVGS-PRP 243
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 320 KALETLVETSGGDMRRAITCLQSC-ARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSF 378
+A ++L+ S GDMRRA+ LQ+C A + GE I E V + G P P D
Sbjct: 196 EAFQSLLHLSSGDMRRALNVLQACYASVDAGEQISEELVYDCVGS-PRP-------ADIR 247
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMS-----------ASSLSDKQKALILEKLAEC 427
VL+ ++ A Q + ++ L +K + +L+ L+E
Sbjct: 248 TVLQAVLDGSWESALHTFSYIKQSKGLALADMLTAFAVEFQKLDLQNKTRIALLDGLSEI 307
Query: 428 NARLQDGASEYIQ 440
RL G +E IQ
Sbjct: 308 EWRLSSGGNESIQ 320
>gi|169602695|ref|XP_001794769.1| hypothetical protein SNOG_04350 [Phaeosphaeria nodorum SN15]
gi|160706232|gb|EAT88110.2| hypothetical protein SNOG_04350 [Phaeosphaeria nodorum SN15]
Length = 1017
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 137/355 (38%), Positives = 189/355 (53%), Gaps = 60/355 (16%)
Query: 43 TIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILE 101
T+ +V Q + +L + L ++LPH LFYGPPGTGKTST++A QL+G ++ + R+LE
Sbjct: 649 TLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYGPELMKSRVLE 708
Query: 102 LNASDDRGIQVIRDKVKTFAQQ---TASGFN----------------QDGKPCPPFKIVI 142
LNASD+RGI ++R KVK FA+Q A +N +D CPPFKI++
Sbjct: 709 LNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGEAKMVRYRDKYSCPPFKIIV 768
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEADSMT AQ+ALRRTME ++ TRFCL+CNYV+ II PL SRCSKFRFK L + +
Sbjct: 769 LDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAV 828
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN--------- 253
R+ I + E V D E LV + GD+R+AIT LQS ARL G
Sbjct: 829 RRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQSAARLVGATQTAGRKKKVVVDD 888
Query: 254 -------------------EDVLEVTGVIPKPWIEKL---------LKVDSFQVLEKYIE 285
E + E+ GVIP P + K + + K +E
Sbjct: 889 EDEMDIDPPSAPSKTTISLEQIAEIAGVIPAPTLASFSDALFPKSAAKSIRYNEIAKVVE 948
Query: 286 DLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVE---TSGGDMRRAI 337
++I E +SA+Q Q ++ VM + D +K + + + GGD A+
Sbjct: 949 NMIAEGWSASQTVSQLYEQVMFDERVEDIKKVRLAGVFSETDKRLVDGGDEHLAV 1003
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 69/160 (43%), Gaps = 37/160 (23%)
Query: 323 ETLVETSGGDMRRAITCLQSCARLKGGEGIVN---------------------------- 354
E LV + GD+R+AIT LQS ARL G
Sbjct: 848 EELVRVADGDLRKAITFLQSAARLVGATQTAGRKKKVVVDDEDEMDIDPPSAPSKTTISL 907
Query: 355 EDVLEVTGVIPNPWIEKL---------LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDI 405
E + E+ GVIP P + K + + K +E++I E +SA+Q Q ++
Sbjct: 908 EQIAEIAGVIPAPTLASFSDALFPKSAAKSIRYNEIAKVVENMIAEGWSASQTVSQLYEQ 967
Query: 406 VMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 445
VM + D +K + +E + RL DG E++ +LDLG
Sbjct: 968 VMFDERVEDIKKVRLAGVFSETDKRLVDGGDEHLAVLDLG 1007
>gi|320581211|gb|EFW95432.1| DNA replication factor C [Ogataea parapolymorpha DL-1]
Length = 325
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 117/235 (49%), Positives = 159/235 (67%), Gaps = 9/235 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DDV Q++VV ++K +PH LFYGPPGTGKTST+IA +L+G
Sbjct: 6 LPWVEKYRPAKLDDVYGQKDVVQTVRKFAKEGRIPHLLFYGPPGTGKTSTIIALARELYG 65
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR +LELNASDDRGI V+RD++K FA T FN FK++ILDEAD+M++A
Sbjct: 66 KNYRNMVLELNASDDRGIDVVRDQIKNFA-STRQIFNSG------FKLIILDEADAMSNA 118
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK TK+TRFC++ NY + L SRC++FRF PLA++ + R+ Y+ + E
Sbjct: 119 AQNALRRVIEKYTKNTRFCILANYSHKLNPALLSRCTRFRFSPLADSALQDRVDYVIKAE 178
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCAR-LKGGEGIVNEDVLEVTGVIPKP 266
+ A ++L+E S GDMRRA+ LQ+CA ++ GE I + V E G P+P
Sbjct: 179 GLKIASDARQSLLELSEGDMRRALNVLQACATAVESGEEITQDMVYECVGA-PRP 232
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 79/196 (40%), Gaps = 36/196 (18%)
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKA------ 321
IEK K F +L Y L S F +F + S+L D+ + KA
Sbjct: 127 IEKYTKNTRFCILANYSHKLNPALLSRCTRF-RFSPLA--DSALQDRVDYVIKAEGLKIA 183
Query: 322 ---LETLVETSGGDMRRAITCLQSCAR-LKGGEGIVNEDVLEVTG-------------VI 364
++L+E S GDMRRA+ LQ+CA ++ GE I + V E G ++
Sbjct: 184 SDARQSLLELSEGDMRRALNVLQACATAVESGEEITQDMVYECVGAPRPQSVMTVLDAIM 243
Query: 365 PNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKL 424
N W D++ + K + E + L F V+ L + + +L+ L
Sbjct: 244 SNDW------TDAYATMTKIRK---TEGLALVDLMSGFVS-VLDKYELKPRTRMAVLQGL 293
Query: 425 AECNARLQDGASEYIQ 440
+ + G S+ IQ
Sbjct: 294 GDIEYSISKGGSDKIQ 309
>gi|407847432|gb|EKG03143.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 126/294 (42%), Positives = 182/294 (61%), Gaps = 15/294 (5%)
Query: 23 STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
ST ++ +PWVEKYRP T+D+V+ ++++S ++ + +LPH LFYGPPGTGKT+T
Sbjct: 8 STGHAAKSSTLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTT 67
Query: 83 MIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP---- 137
+ A + LFG D R +LE+NASDDRGI V+R +V+ FA + S F P P
Sbjct: 68 IKACAYYLFGKDRIRANVLEMNASDDRGIDVVRQQVREFA--STSSFYFASTPAAPTIAA 125
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
FK+VILDEAD M+ AQAALRR +EK TK+ RFC++CN+++ II L SRC++FRF P+
Sbjct: 126 FKLVILDEADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVK 185
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
++ ML+RL+++ ++E V + L S GD+RR + LQ+ A + GE I E V
Sbjct: 186 KSAMLSRLKFVAQEEGVRFTDEGLVAAFRLSNGDLRRCLNTLQASA-MSAGE-ITEESVY 243
Query: 258 EVTGVIPKPW-----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
VTG P P +E ++ D EK + + + S+T L + H IVM
Sbjct: 244 RVTGN-PTPADVRGIVEDMIAHDFAASWEKVHQIVSEKGVSSTDLVREVHHIVM 296
Score = 45.1 bits (105), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 329 SGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-----IEKLLKVDSFQVLEK 383
S GD+RR + LQ+ A + GE I E V VTG P P +E ++ D EK
Sbjct: 216 SNGDLRRCLNTLQASA-MSAGE-ITEESVYRVTGN-PTPADVRGIVEDMIAHDFAASWEK 272
Query: 384 YIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
+ + + S+T L + H IVM A L + K +L KLA+ GA E
Sbjct: 273 VHQIVSEKGVSSTDLVREVHHIVM-AMDLPQESKCFLLMKLADVEYYAAGGAKE 325
>gi|156938086|ref|YP_001435882.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
gi|156567070|gb|ABU82475.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
Length = 329
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 121/260 (46%), Positives = 171/260 (65%), Gaps = 15/260 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPK++D++++Q+++V LKK + ++PH LF GPPGTGKT+ +A H L+G+
Sbjct: 9 WAEKYRPKSLDEIVDQEDIVRRLKKFVEEKNVPHMLFAGPPGTGKTTAALALAHDLYGEK 68
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
YR+ ILELNASD+RGI VIR KVK FA+ P PFK+VILDEAD+MT AQ
Sbjct: 69 YRQYILELNASDERGIDVIRTKVKEFARSRTP-------PTVPFKLVILDEADNMTADAQ 121
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME + +TRF L+ N+ S II+P+ SRC FRF+PL ++ ++ RL+YIC++E V
Sbjct: 122 QALRRLMEMYSTTTRFILLANFPSKIIEPVQSRCVYFRFRPLPKDKVIERLKYICQKEGV 181
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPKPWIEKLLK 273
C+ ALE + S GDMR+AI LQ+ A L G V +D V + G + I+++L+
Sbjct: 182 QCEEDALEEIYNISEGDMRKAINILQAAAAL----GKVTKDAVYKAIGYVHPSKIKEILE 237
Query: 274 V---DSFQVLEKYIEDLILE 290
F K + D+++E
Sbjct: 238 YALNGDFTKSAKLLRDVMIE 257
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEKLLKV---D 376
ALE + S GDMR+AI LQ+ A L G V +D V + G + I+++L+
Sbjct: 187 ALEEIYNISEGDMRKAINILQAAAAL----GKVTKDAVYKAIGYVHPSKIKEILEYALNG 242
Query: 377 SFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNARLQDG 434
F K + D+++E S + F +M S L ++ K L+ + E RL +G
Sbjct: 243 DFTKSAKLLRDVMIEYGLSGLDVLKMFQRELMGGSFELPEELKVLLADYAGEVQFRLAEG 302
Query: 435 ASEYIQI 441
A + +Q+
Sbjct: 303 ADDEVQL 309
>gi|46108652|ref|XP_381384.1| hypothetical protein FG01208.1 [Gibberella zeae PH-1]
Length = 314
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 130/277 (46%), Positives = 173/277 (62%), Gaps = 30/277 (10%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ----Q 123
LFYGPPGTGKTST++A +L+G DM + R+LELNASD+RGI ++R+KVK FA+
Sbjct: 1 MLFYGPPGTGKTSTVLALAKELYGPDMIKSRVLELNASDERGISIVREKVKNFARMQLTN 60
Query: 124 TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183
G+ +D PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II P
Sbjct: 61 PPPGY-KDKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDP 119
Query: 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
L SRCSKFRFK L ++ RL+ I E+E V + A++ L++ S GD+R+AIT LQS A
Sbjct: 120 LASRCSKFRFKSLDQSNAKKRLEEIAEKEGVPLEDGAVDALIKCSEGDLRKAITYLQSAA 179
Query: 244 RLKG-------GEG----------IVNEDVLEVTGVIPKPWIEKLLKV-------DSFQV 279
RL G GEG + + V ++ GVIP I L+ S+Q
Sbjct: 180 RLVGASASDKDGEGDEAMDVDKKAVTVKIVEDIAGVIPDSTIGDLVSAIRPKSSGSSYQA 239
Query: 280 LEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ +E L+ + +SA Q+ Q + + + D QK
Sbjct: 240 ISDVVEKLVADGWSAGQVVGQLYQALTYDEIIPDAQK 276
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 24/148 (16%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKG-------GEG----------IVNEDVLEVTGV 363
A++ L++ S GD+R+AIT LQS ARL G GEG + + V ++ GV
Sbjct: 156 AVDALIKCSEGDLRKAITYLQSAARLVGASASDKDGEGDEAMDVDKKAVTVKIVEDIAGV 215
Query: 364 IPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQ 416
IP+ I L+ S+Q + +E L+ + +SA Q+ Q + + + D Q
Sbjct: 216 IPDSTIGDLVSAIRPKSSGSSYQAISDVVEKLVADGWSAGQVVGQLYQALTYDEIIPDAQ 275
Query: 417 KALILEKLAECNARLQDGASEYIQILDL 444
K I+ +E + RL DGA E++ +LDL
Sbjct: 276 KNKIVMVFSEVDKRLVDGADEHLSVLDL 303
>gi|124801405|ref|XP_001349685.1| replication factor C, subunit 2 [Plasmodium falciparum 3D7]
gi|3845290|gb|AAC71957.1| replication factor C, subunit 2 [Plasmodium falciparum 3D7]
Length = 330
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 191/309 (61%), Gaps = 14/309 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD++ Q V +LK+ + ++PH +F+GPPGTGKTS + A H+LFG
Sbjct: 4 IPWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFG 63
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADS 148
+ ER+LELNASDDRGI V+R+K+K + + + S ++ + P +K+V+LDEAD
Sbjct: 64 KENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEADM 123
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRR +E + TRF LICNY+ I P+ SRCS +RF+ + N +L YI
Sbjct: 124 MTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLYI 183
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWI 268
C+ E++ ALE ++ET+ GD+RRA++ LQ C+ + I VL+V+G+ +
Sbjct: 184 CQNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCI--NTKITLNSVLDVSGLPSDNIV 241
Query: 269 EKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETL 325
K++ K+ +++EK ++D+I + + +F F++ + + D K + L
Sbjct: 242 YKIIDACKMKDLKLVEKTVQDIIEDGFDVAYIFKSFNNYFVTNTEYEDSLK-----YQIL 296
Query: 326 VETSGGDMR 334
+E S D R
Sbjct: 297 LELSRHDYR 305
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 77/131 (58%), Gaps = 5/131 (3%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDS 377
ALE ++ET+ GD+RRA++ LQ C+ + I VL+V+G+ + + K++ K+
Sbjct: 195 ALEKIIETTEGDLRRAVSILQLCSCI--NTKITLNSVLDVSGLPSDNIVYKIIDACKMKD 252
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
+++EK ++D+I + + +F F++ ++ + D K IL +L+ + RL GA++
Sbjct: 253 LKLVEKTVQDIIEDGFDVAYIFKSFNNYFVTNTEYEDSLKYQILLELSRHDYRLHCGATQ 312
Query: 438 YIQILDLGSIV 448
YIQ+L S V
Sbjct: 313 YIQLLSFASSV 323
>gi|238484697|ref|XP_002373587.1| DNA replication factor C subunit Rfc2, putative [Aspergillus flavus
NRRL3357]
gi|220701637|gb|EED57975.1| DNA replication factor C subunit Rfc2, putative [Aspergillus flavus
NRRL3357]
Length = 320
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/282 (46%), Positives = 176/282 (62%), Gaps = 34/282 (12%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTAS- 126
LFYGPPGTGKTST++A LFG +YR RILELNASD+RGI ++R+KVK FA+ S
Sbjct: 1 MLFYGPPGTGKTSTILALAKSLFGPALYRSRILELNASDERGIAIVREKVKDFARVQLSH 60
Query: 127 --GFNQ---DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCII 181
G ++ + PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCL+CNYV+ II
Sbjct: 61 PTGVDKSYFEKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRII 120
Query: 182 QPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
+PL SRCSKFRFKPL + RL I + E++ + ++ L++ S GD+RRAIT +QS
Sbjct: 121 EPLASRCSKFRFKPLDNSAAGDRLAQIAKLENLELEDGVVDKLIQCSDGDLRRAITYMQS 180
Query: 242 CARLKGGEG--------------------IVNEDVLEVTGVIPKPWIEKLLKV------- 274
ARL G G I V E+ GVIP+ +++L++
Sbjct: 181 GARLVGATGNSGRQDGGEDAEMTDASSQVITVRMVEEIAGVIPESVLDQLVQAMQPKKIG 240
Query: 275 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
S++ + K D++ + +SATQL Q + V+ ++ D QK
Sbjct: 241 SSYEAVSKVTTDIVADGWSATQLLAQLYRRVVYNDAIPDIQK 282
Score = 75.5 bits (184), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 77/151 (50%), Gaps = 27/151 (17%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEG--------------------IVNEDVLEVT 361
++ L++ S GD+RRAIT +QS ARL G G I V E+
Sbjct: 160 VDKLIQCSDGDLRRAITYMQSGARLVGATGNSGRQDGGEDAEMTDASSQVITVRMVEEIA 219
Query: 362 GVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSD 414
GVIP +++L++ S++ + K D++ + +SATQL Q + V+ ++ D
Sbjct: 220 GVIPESVLDQLVQAMQPKKIGSSYEAVSKVTTDIVADGWSATQLLAQLYRRVVYNDAIPD 279
Query: 415 KQKALILEKLAECNARLQDGASEYIQILDLG 445
QK I+ +E + RL DGA E++ ILD+
Sbjct: 280 IQKNKIVMVFSEMDKRLVDGADEHLSILDVA 310
>gi|66812244|ref|XP_640301.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74855117|sp|Q54ST4.1|RFC5_DICDI RecName: Full=Probable replication factor C subunit 5; AltName:
Full=Activator 1 subunit 5
gi|60468315|gb|EAL66323.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 347
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 116/234 (49%), Positives = 154/234 (65%), Gaps = 6/234 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD+I +++ + K + LPH LFYGPPGTGKTST+ A +L+G
Sbjct: 24 LPWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLYG 83
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D Y +LELNASDDRGI V+R+++KTFA + FN P+K++ILDEADSMT+
Sbjct: 84 DNYSRMVLELNASDDRGIDVVREQIKTFAS-SMFFFNT----TVPYKLIILDEADSMTNI 138
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK TK+TRFC++CNYV II L SRC++FRF PL RL+ I E+E
Sbjct: 139 AQTALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEIIEKE 198
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP 266
+V D KA+ ++E GDMR+ + LQS + I E + + TG P P
Sbjct: 199 NVKVDSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGY-PMP 251
>gi|126466118|ref|YP_001041227.1| replication factor C small subunit [Staphylothermus marinus F1]
gi|158513390|sp|A3DNV9.1|RFCS_STAMF RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|126014941|gb|ABN70319.1| replication factor C small subunit [Staphylothermus marinus F1]
Length = 329
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 114/211 (54%), Positives = 148/211 (70%), Gaps = 7/211 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPKT+D++++Q+E+VS LK+ + ++PH LF GPPGTGKT+ H LFG+
Sbjct: 13 WAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFGEN 72
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
YR+ +LELNASD+RGI VIR KVK FA+ + PFKIV+LDEAD+MT AQ
Sbjct: 73 YRQYMLELNASDERGIDVIRSKVKEFARTRVAA-------NIPFKIVLLDEADNMTADAQ 125
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME T +TRF LI NY S II+P+ SRC+ FRF PL + +++RL++I EQE V
Sbjct: 126 QALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQEKV 185
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARL 245
D +ALE + + S GDMRRAI LQ+ A L
Sbjct: 186 EIDEEALEAIHDLSEGDMRRAINILQAAAAL 216
Score = 42.7 bits (99), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEKLLKV--- 375
+ALE + + S GDMRRAI LQ+ A L G V D V +V G+ I +++++
Sbjct: 190 EALEAIHDLSEGDMRRAINILQAAAAL----GKVTVDSVYKVVGLAHPREIRQMIQLALA 245
Query: 376 -DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNARLQD 433
+ EK E +I S + Q H + S + D+ K +I + E RL +
Sbjct: 246 GNFNDAREKLRELMINYGLSGVDVIKQVHREIFSTDIKIPDEFKIIIADLAGEIQFRLVE 305
Query: 434 GASEYIQI 441
GA + IQ+
Sbjct: 306 GADDEIQL 313
>gi|307110220|gb|EFN58456.1| hypothetical protein CHLNCDRAFT_48527 [Chlorella variabilis]
Length = 293
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 121/268 (45%), Positives = 161/268 (60%), Gaps = 41/268 (15%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRP++I +V Q+EVV L+ LS +LPH LFYGPPGTGKT++ +A QLFG
Sbjct: 5 PWVEKYRPRSIGEVAHQEEVVQTLQHALSSGNLPHLLFYGPPGTGKTTSALAIVRQLFGP 64
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ + R+LELNASD+RGI V+RDK+K FA + G G PCPPFK++ILDEADSMT
Sbjct: 65 ELCKARVLELNASDERGIGVVRDKIKNFAANSV-GQGVAGYPCPPFKVIILDEADSMTGD 123
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME ++ TRF ICNYVS II+PL SRC+KFRFKPL + + R+ +IC
Sbjct: 124 AQNALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQGDVINERINHIC--- 180
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
+GG R +L+V+G +P + LL
Sbjct: 181 ------------AGAAGGGCRH---------------------ILDVSGSVPPSAAQGLL 207
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQL 297
+ F ++ + DLI + Y A ++
Sbjct: 208 AAARSPQFARVQAAVTDLIADGYPAQEI 235
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 343 CARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQLF 399
CA GG +L+V+G +P + LL + F ++ + DLI + Y A ++
Sbjct: 180 CAGAAGGG---CRHILDVSGSVPPSAAQGLLAAARSPQFARVQAAVTDLIADGYPAQEIL 236
Query: 400 DQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGS 446
Q ++ + +D K IL +L+E + L DG+ E++Q+L S
Sbjct: 237 LQLQAALLQDAGAADSAKGKILVRLSEADKSLVDGSDEFLQLLGAAS 283
>gi|440465527|gb|ELQ34846.1| replication factor C subunit 2 [Magnaporthe oryzae Y34]
gi|440481017|gb|ELQ61644.1| replication factor C subunit 2 [Magnaporthe oryzae P131]
Length = 323
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/278 (46%), Positives = 177/278 (63%), Gaps = 27/278 (9%)
Query: 66 LPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQT 124
LPH LFYGPPGTGKTST++A +LFG ++ + R+LELNASD+RGI ++R+KVK FA+
Sbjct: 6 LPHMLFYGPPGTGKTSTVLALAKELFGPELMKSRVLELNASDERGISIVREKVKDFARMQ 65
Query: 125 ASGFNQDGK---PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCII 181
+ K PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II
Sbjct: 66 LTNPPPGYKSKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRII 125
Query: 182 QPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
PL SRCSKFRFK L + +RL+ I +E V + A++ L++ S GD+R+AIT LQS
Sbjct: 126 DPLASRCSKFRFKSLDQENARSRLEDIAAKEGVALEDGAVDALIKCSEGDLRKAITFLQS 185
Query: 242 CARL---KGGEGIVNEDVLEV-------------TGVIPKPWIEKLLKVD-------SFQ 278
ARL G G ED ++V GVIP I+ L++ ++Q
Sbjct: 186 AARLVGAVGAAGAGQEDKMDVDSRPVTVRIIEDIAGVIPGKTIDALVEAIRPRGAALTYQ 245
Query: 279 VLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ K +ED++ + +SATQ+ Q + ++ + + QK
Sbjct: 246 AVSKVVEDMVADGWSATQVVGQLYQAIVYDEGIPNIQK 283
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 23/147 (15%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIV---NEDVLEV-------------TGVI 364
A++ L++ S GD+R+AIT LQS ARL G G ED ++V GVI
Sbjct: 164 AVDALIKCSEGDLRKAITFLQSAARLVGAVGAAGAGQEDKMDVDSRPVTVRIIEDIAGVI 223
Query: 365 PNPWIEKLLKVD-------SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQK 417
P I+ L++ ++Q + K +ED++ + +SATQ+ Q + ++ + + QK
Sbjct: 224 PGKTIDALVEAIRPRGAALTYQAVSKVVEDMVADGWSATQVVGQLYQAIVYDEGIPNIQK 283
Query: 418 ALILEKLAECNARLQDGASEYIQILDL 444
I+ +E + RL DG+ E++ ILDL
Sbjct: 284 NEIVMVFSEVDKRLVDGSDEHLSILDL 310
>gi|15897670|ref|NP_342275.1| replication factor C small subunit [Sulfolobus solfataricus P2]
gi|284174995|ref|ZP_06388964.1| replication factor C small subunit [Sulfolobus solfataricus 98/2]
gi|384434284|ref|YP_005643642.1| replication factor C [Sulfolobus solfataricus 98/2]
gi|42559539|sp|Q9UXF5.1|RFCS_SULSO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=SsoRFC small subunit
gi|6015708|emb|CAB57535.1| activator 1, replication factor C, small subunit [Sulfolobus
solfataricus P2]
gi|13813941|gb|AAK41065.1| Activator 1, replication factor C, small subunit (rfc) [Sulfolobus
solfataricus P2]
gi|261602438|gb|ACX92041.1| Replication factor C [Sulfolobus solfataricus 98/2]
Length = 330
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 111/216 (51%), Positives = 149/216 (68%), Gaps = 7/216 (3%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + + W EKYRPKT+DD++ Q+E++ LKK + ++PH LF GPPGTGKT+ +A
Sbjct: 3 TKVEEILWAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALV 62
Query: 88 HQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
H L+GD Y E LELNASD+RGI VIR+KVK FA+ G PFK+V+LDEAD
Sbjct: 63 HDLYGDNYTEYFLELNASDERGIDVIRNKVKEFARTVIPG-------DIPFKVVLLDEAD 115
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRRTME T++TRF L CNY+S II+P+ SR + FRF PL + ++ RL Y
Sbjct: 116 NMTADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIY 175
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
I + E D KALET+ + + GDMR++I LQ+ +
Sbjct: 176 IAKNEKAEYDQKALETIYDITMGDMRKSINILQAAS 211
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 15/183 (8%)
Query: 283 YIEDLILEAYSATQLFDQF----HDIVMLASSLSDKQKALF--KALETLVETSGGDMRRA 336
Y+ +I S T LF + D+V ++ +KA + KALET+ + + GDMR++
Sbjct: 144 YLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAKNEKAEYDQKALETIYDITMGDMRKS 203
Query: 337 ITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSF-QVLEKYIEDLILEA 392
I LQ+ + I E V +V G+ + +++ + F Q +K LI
Sbjct: 204 INILQAAS---AYGKISVEAVFKVLGLAQPKEVREMINLALQGKFTQARDKLRTLLITYG 260
Query: 393 YSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILD-LGSIVIK 450
S + Q H +I S +S++ + L+L+ + E R+ +GA + IQ+ L + I
Sbjct: 261 LSGEDIVKQIHREITSSEIQISEELRVLLLDYIGETEFRIIEGADDEIQLSALLAKMAIY 320
Query: 451 ANK 453
NK
Sbjct: 321 GNK 323
>gi|71413122|ref|XP_808715.1| replication factor C, subunit 3 [Trypanosoma cruzi strain CL
Brener]
gi|70872975|gb|EAN86864.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 124/294 (42%), Positives = 181/294 (61%), Gaps = 15/294 (5%)
Query: 23 STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
ST ++ +PWVEKYRP T+D+V+ ++++S ++ + +LPH LFYGPPGTGKT+T
Sbjct: 8 STGHAAKSSTLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTT 67
Query: 83 MIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP---- 137
+ A + LFG D R +LE+NASDDRGI V+R +V+ F+ + S F P P
Sbjct: 68 IKACAYYLFGKDRIRANVLEMNASDDRGIDVVRQQVREFS--STSSFYFASAPAAPTIAA 125
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
FK+VILDEAD M+ AQAALRR +EK TK+ RFC++CN+++ II L SRC++FRF P+
Sbjct: 126 FKLVILDEADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVK 185
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
++ ML RL+++ ++E V + L S GD+RR + +Q+ A + GE I E V
Sbjct: 186 KSAMLPRLKFVAQEEGVRFTDEGLVAAFRLSNGDLRRCLNTMQASA-MSAGE-ITEESVY 243
Query: 258 EVTGVIPKPW-----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
VTG P P +E ++ D EK + + + S+T L + H IVM
Sbjct: 244 RVTGN-PTPADVRGIVEDMIAHDFAASWEKVQQTVSEKGVSSTDLVREVHHIVM 296
Score = 45.1 bits (105), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 329 SGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-----IEKLLKVDSFQVLEK 383
S GD+RR + +Q+ A + GE I E V VTG P P +E ++ D EK
Sbjct: 216 SNGDLRRCLNTMQASA-MSAGE-ITEESVYRVTGN-PTPADVRGIVEDMIAHDFAASWEK 272
Query: 384 YIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
+ + + S+T L + H IVM A L + K +L KLA+ GA E
Sbjct: 273 VQQTVSEKGVSSTDLVREVHHIVM-AMDLPQESKCFLLMKLADVEYYAAGGAKE 325
>gi|332796204|ref|YP_004457704.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
gi|332693939|gb|AEE93406.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
Length = 326
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 113/242 (46%), Positives = 161/242 (66%), Gaps = 10/242 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+ W EKYRP+++DD++ Q+++V LK+ + ++PH LF GPPGTGKT+ +A H L+G
Sbjct: 5 ILWAEKYRPRSLDDIVNQKDIVERLKRFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYG 64
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D Y + LELNASD+RGI VIR+KVK FA+ S PFK+++LDEAD+MT
Sbjct: 65 DSYEQFFLELNASDERGIDVIRNKVKEFARTMVSS-------SVPFKVILLDEADNMTAD 117
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME T+STRF L CNY+S II P+ SR + FRF PL + +++RL++I ++E
Sbjct: 118 AQQALRRTMELYTESTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVVSRLEFIAKEE 177
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
V D KALET+ + + GDMR+AI LQ+ + + E V +V G+ + +L
Sbjct: 178 KVEYDEKALETIYDVTMGDMRKAINTLQAAS---AYGKVTIETVFKVLGLAQPKEVRDML 234
Query: 273 KV 274
K+
Sbjct: 235 KL 236
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 15/183 (8%)
Query: 283 YIEDLILEAYSATQLFDQF----HDIVMLASSLSDKQKALF--KALETLVETSGGDMRRA 336
Y+ +I S T LF + D+V ++ ++K + KALET+ + + GDMR+A
Sbjct: 141 YLSKIIDPIQSRTALFRFYPLKKEDVVSRLEFIAKEEKVEYDEKALETIYDVTMGDMRKA 200
Query: 337 ITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV----DSFQVLEKYIEDLILEA 392
I LQ+ + + E V +V G+ + +LK+ + EK L+
Sbjct: 201 INTLQAAS---AYGKVTIETVFKVLGLAQPKEVRDMLKLALSGKFMEAREKLRSLLVTYG 257
Query: 393 YSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILD-LGSIVIK 450
S + Q H ++ + + ++ + L+++ + E R+ +GA + IQ+ L I I
Sbjct: 258 LSGEDIVKQLHRELTSNELQIPEELRVLLMDYIGEVEFRIIEGADDEIQLSALLAKIAIY 317
Query: 451 ANK 453
NK
Sbjct: 318 GNK 320
>gi|300121957|emb|CBK22531.2| unnamed protein product [Blastocystis hominis]
Length = 314
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 121/281 (43%), Positives = 178/281 (63%), Gaps = 8/281 (2%)
Query: 44 IDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELN 103
+DDV Q+E ++ L++ + +LPH LFYGPPGTGKTST++A H+LFG +R+LE+N
Sbjct: 1 MDDVSHQEEALNALRRSVKEGNLPHLLFYGPPGTGKTSTILALTHELFGPDLSDRVLEMN 60
Query: 104 ASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEK 163
ASD+RGI VIR+KV FA+Q+ + G P PP+KI+I+DEADS+T AQ+ALRR ME+
Sbjct: 61 ASDERGIDVIREKVILFARQSVRQ-SIPGYPSPPYKIIIMDEADSLTMDAQSALRRVMEQ 119
Query: 164 ETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALET 223
++ TRFC ICNY+S II L+SRC++F F L ++L RL +IC +E + + +AL+
Sbjct: 120 YSRVTRFCFICNYISKIIPALSSRCARFEFGALPRGSVLERLSFICGEEKIEIENEALDF 179
Query: 224 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP-----W--IEKLLKVDS 276
+ + S GD+R I LQ+ + G+ I +D+ +T IPK W +E K S
Sbjct: 180 IFDHSRGDLRAGIQLLQNAETVNRGKKITVKDLESITLNIPKTVLFRLWDTMEATKKASS 239
Query: 277 FQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
L + ++ + ++ Y + L D V+ LSD QKA
Sbjct: 240 IAKLRQVVDAICMDGYPVSALLSVISDRVVGDEKLSDAQKA 280
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----W--IEKL 372
+AL+ + + S GD+R I LQ+ + G+ I +D+ +T IP W +E
Sbjct: 175 EALDFIFDHSRGDLRAGIQLLQNAETVNRGKKITVKDLESITLNIPKTVLFRLWDTMEAT 234
Query: 373 LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQ 432
K S L + ++ + ++ Y + L D V+ LSD QKA I LA +
Sbjct: 235 KKASSIAKLRQVVDAICMDGYPVSALLSVISDRVVGDEKLSDAQKAEIALILANADKATV 294
Query: 433 DGASEYIQILDLGSIVIK 450
DG E + +LD+ ++K
Sbjct: 295 DGCDEELTLLDVCCSIVK 312
>gi|449018110|dbj|BAM81512.1| replication factor C subunit 5 [Cyanidioschyzon merolae strain 10D]
Length = 366
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 129/308 (41%), Positives = 182/308 (59%), Gaps = 13/308 (4%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
T+ ++ WVEKYRP+ +D+++ E+ L++ ++ LPH LFYGPPGTGKT+ +
Sbjct: 8 TATQSEQSETIWVEKYRPRELDEIVAHDEIRGTLRRLIAERTLPHLLFYGPPGTGKTTAI 67
Query: 84 IAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
+A ++FG ++ +LELNASDDRGI V+R+++KTFA + G K+VIL
Sbjct: 68 LACAREMFGAQFKTMVLELNASDDRGIDVVREQIKTFASTRHIYALKAG-----IKLVIL 122
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT AAQAALRR MEK T + RFCLICNY + II + SRC++FRF+P+ M+
Sbjct: 123 DEADAMTSAAQAALRRIMEKYTSNIRFCLICNYANKIIPAIQSRCTRFRFQPVPVAQMIQ 182
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
RL+YI ++E V D A + L + GDMRRAI +QS L V ED + +
Sbjct: 183 RLEYIADREGVPVDRAAFDALARIAQGDMRRAIYLMQSTF-LASASARVTEDGVYANAGM 241
Query: 264 PKP----WIEKLLKVDSF-QVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA- 317
P P I ++L D F Q K E + ++ + H+ VML LS K KA
Sbjct: 242 PSPADLHAIAQILLYDPFAQAFCKISEIKKGKGFALLDMIHGLHEAVMLM-ELSPKVKAF 300
Query: 318 LFKALETL 325
LF+ L +
Sbjct: 301 LFEQLANM 308
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 59/132 (44%), Gaps = 7/132 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP----WIEKLLKVD 376
A + L + GDMRRAI +QS L V ED + +P+P I ++L D
Sbjct: 199 AFDALARIAQGDMRRAIYLMQSTF-LASASARVTEDGVYANAGMPSPADLHAIAQILLYD 257
Query: 377 SF-QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
F Q K E + ++ + H+ VM LS K KA + E+LA RL
Sbjct: 258 PFAQAFCKISEIKKGKGFALLDMIHGLHEAVM-LMELSPKVKAFLFEQLANMEWRLVSAT 316
Query: 436 SEYIQILDLGSI 447
SE IQ+ L I
Sbjct: 317 SERIQLAALVGI 328
>gi|227827646|ref|YP_002829426.1| replication factor C small subunit [Sulfolobus islandicus M.14.25]
gi|229584850|ref|YP_002843352.1| replication factor C small subunit [Sulfolobus islandicus M.16.27]
gi|238619814|ref|YP_002914640.1| replication factor C small subunit [Sulfolobus islandicus M.16.4]
gi|385773316|ref|YP_005645882.1| replication factor C [Sulfolobus islandicus HVE10/4]
gi|385775948|ref|YP_005648516.1| replication factor C [Sulfolobus islandicus REY15A]
gi|227459442|gb|ACP38128.1| Replication factor C [Sulfolobus islandicus M.14.25]
gi|228019900|gb|ACP55307.1| Replication factor C [Sulfolobus islandicus M.16.27]
gi|238380884|gb|ACR41972.1| Replication factor C [Sulfolobus islandicus M.16.4]
gi|323474696|gb|ADX85302.1| Replication factor C [Sulfolobus islandicus REY15A]
gi|323477430|gb|ADX82668.1| Replication factor C [Sulfolobus islandicus HVE10/4]
Length = 330
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 109/211 (51%), Positives = 146/211 (69%), Gaps = 7/211 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+ W EKYRP+T+DD++ Q+E++ LKK + ++PH LF GPPGTGKT+ +A H L+G
Sbjct: 8 ILWAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYG 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D Y E LELNASD+RGI VIR+KVK FA+ G PFK+V+LDEAD+MT
Sbjct: 68 DNYVEYFLELNASDERGIDVIRNKVKEFARTVIPG-------NVPFKVVLLDEADNMTAD 120
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME T++TRF L CNY+S II+P+ SR + FRF PL + ++ RL YI + E
Sbjct: 121 AQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNE 180
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCA 243
D KALET+ + + GDMR++I LQ+ +
Sbjct: 181 KAEYDQKALETIYDITMGDMRKSINILQAAS 211
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 15/183 (8%)
Query: 283 YIEDLILEAYSATQLFDQF----HDIVMLASSLSDKQKALF--KALETLVETSGGDMRRA 336
Y+ +I S T LF + D+V ++ +KA + KALET+ + + GDMR++
Sbjct: 144 YLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNEKAEYDQKALETIYDITMGDMRKS 203
Query: 337 ITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSF-QVLEKYIEDLILEA 392
I LQ+ + I E V +V G+ + +++ + F Q EK L+
Sbjct: 204 INILQAAS---AYGKISVEAVFKVLGLAQPKEVREMISLALQGKFTQAREKLRTLLVTYG 260
Query: 393 YSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILD-LGSIVIK 450
S + Q H +I S +S++ + L+L+ + E R+ +GA + IQ+ L + I
Sbjct: 261 LSGEDIIKQIHREITSSELQISEELRVLLLDYIGETEFRIIEGADDEIQLSALLAKMAIY 320
Query: 451 ANK 453
NK
Sbjct: 321 GNK 323
>gi|407408177|gb|EKF31712.1| replication factor C, subunit 3, putative [Trypanosoma cruzi
marinkellei]
Length = 355
Score = 234 bits (598), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 123/292 (42%), Positives = 178/292 (60%), Gaps = 11/292 (3%)
Query: 23 STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
ST ++ +PWVEKYRP T+D+V+ ++++S ++ + +LPH LFYGPPGTGKT+T
Sbjct: 8 STVHTVKSSTLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTT 67
Query: 83 MIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD--GKPCPPFK 139
+ A + LFG D R +LE+NASDDRGI V+R +V+ FA ++ F FK
Sbjct: 68 IKACAYYLFGKDRIRANVLEMNASDDRGIDVVRQQVREFASTSSFYFASAPAASTIAAFK 127
Query: 140 IVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAEN 199
+VILDEAD M+ AQAALRR +EK TK+ RFC++CN+++ II L SRC++FRF P+ +N
Sbjct: 128 LVILDEADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKN 187
Query: 200 TMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 259
ML RL+++ ++E V L S GD+RR + +Q+ A + GE I E V V
Sbjct: 188 AMLPRLKFVAQEEGVRFTDGGLVAAFRLSNGDLRRCLNTMQASA-MSAGE-ITEESVYRV 245
Query: 260 TGVIPKPW-----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
TG P P +E ++ D EK + + + S+T L + H IVM
Sbjct: 246 TGN-PTPADVRGIVEDMIAHDFAASWEKVQQTVSEKGVSSTDLVREVHHIVM 296
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 329 SGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-----IEKLLKVDSFQVLEK 383
S GD+RR + +Q+ A + GE I E V VTG P P +E ++ D EK
Sbjct: 216 SNGDLRRCLNTMQASA-MSAGE-ITEESVYRVTGN-PTPADVRGIVEDMIAHDFAASWEK 272
Query: 384 YIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
+ + + S+T L + H IVM A L + K +L KLA+ GA E
Sbjct: 273 VQQTVSEKGVSSTDLVREVHHIVM-AMDLPQESKCFLLMKLADVEYYAAGGAKE 325
>gi|322697954|gb|EFY89728.1| activator 1 41 kDa subunit [Metarhizium acridum CQMa 102]
Length = 314
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 126/277 (45%), Positives = 174/277 (62%), Gaps = 30/277 (10%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ----Q 123
LFYGPPGTGKTST++A +LFG +M + R+LELNASD+RGI ++R+KVK FA+
Sbjct: 1 MLFYGPPGTGKTSTILALAKELFGPEMMKSRVLELNASDERGISIVREKVKNFARMQLTN 60
Query: 124 TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183
G+++ PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II P
Sbjct: 61 PTPGYSKR-YPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDP 119
Query: 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
L SRCSKFRFK L + RL+ I E V + A++ L+ S GD+R+AIT LQS A
Sbjct: 120 LASRCSKFRFKSLDQGNARKRLEEIASAEGVPLEDGAIDALIRCSEGDLRKAITFLQSAA 179
Query: 244 RLKG-------GEG----------IVNEDVLEVTGVIPKPWIEKLLKV-------DSFQV 279
RL G G+G + + V ++ GVIP I+ L+ +++
Sbjct: 180 RLVGASAPGKDGDGDEQMDVDSKPVTAKIVEDIAGVIPGQTIDGLVDALRPRDAGQTYRS 239
Query: 280 LEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ K +ED++ + +SATQ+ Q + + +++D K
Sbjct: 240 VSKIVEDMVADGWSATQVVSQLYQALTTDETIADAHK 276
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 80/149 (53%), Gaps = 24/149 (16%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKG-------GEG----------IVNEDVLEVTGV 363
A++ L+ S GD+R+AIT LQS ARL G G+G + + V ++ GV
Sbjct: 156 AIDALIRCSEGDLRKAITFLQSAARLVGASAPGKDGDGDEQMDVDSKPVTAKIVEDIAGV 215
Query: 364 IPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQ 416
IP I+ L+ +++ + K +ED++ + +SATQ+ Q + + + +++D
Sbjct: 216 IPGQTIDGLVDALRPRDAGQTYRSVSKIVEDMVADGWSATQVVSQLYQALTTDETIADAH 275
Query: 417 KALILEKLAECNARLQDGASEYIQILDLG 445
K I+ +E + RL DGA E++ ILDL
Sbjct: 276 KNKIVMVFSEVDKRLVDGADEHLSILDLA 304
>gi|11559504|gb|AAG37987.1|AF071409_1 replication factor C subunit 2 [Plasmodium falciparum]
Length = 330
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 117/291 (40%), Positives = 184/291 (63%), Gaps = 9/291 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD++ Q V +LK+ + ++PH +F+GPPGTGKTS + A H+LFG
Sbjct: 4 IPWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFG 63
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADS 148
+ ER+LELNASDDRGI V+R+K+K + + + S ++ + P +K+V+LDEAD
Sbjct: 64 KENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEADM 123
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRR +E + TRF LICNY+ I P+ SRCS +RF+ + N +L YI
Sbjct: 124 MTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLYI 183
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWI 268
C+ E++ ALE ++ET+ GD+RRA++ LQ C+ + I VL+V+G+ +
Sbjct: 184 CQNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCI--NTKITLNSVLDVSGLPSDNIV 241
Query: 269 EKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
K++ K+ +++EK ++D+I + + +F F++ + + D K
Sbjct: 242 YKIIDACKMKDLKLVEKTVQDIIEDGFDVAYIFKSFNNYFVTNTEYEDSLK 292
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 76/131 (58%), Gaps = 5/131 (3%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDS 377
ALE ++ET+ GD+RRA++ LQ C+ + I VL+V+G+ + + K++ K+
Sbjct: 195 ALEKIIETTEGDLRRAVSILQLCSCI--NTKITLNSVLDVSGLPSDNIVYKIIDACKMKD 252
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
+++EK ++D+I + + +F F++ ++ + D K IL +L + RL GA++
Sbjct: 253 LKLVEKTVQDIIEDGFDVAYIFKSFNNYFVTNTEYEDSLKYQILLELFRHDYRLHCGATQ 312
Query: 438 YIQILDLGSIV 448
YIQ+L S V
Sbjct: 313 YIQLLSFASSV 323
>gi|297527205|ref|YP_003669229.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
gi|297256121|gb|ADI32330.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
Length = 329
Score = 234 bits (597), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 113/211 (53%), Positives = 146/211 (69%), Gaps = 7/211 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPKT+D+++ Q+E+VS LK+ + ++PH LF GPPGTGKT+ H LFG+
Sbjct: 13 WAEKYRPKTLDEIVNQEEIVSRLKRFVQERNMPHLLFAGPPGTGKTTAAHCLAHDLFGEN 72
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
YR+ +LELNASD+RGI VIR KVK FA+ + PFKIV+LDEAD+MT AQ
Sbjct: 73 YRQYMLELNASDERGIDVIRSKVKEFARTRVTA-------NIPFKIVLLDEADNMTADAQ 125
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME T +TRF LI NY S II+P+ SRC+ FRF PL + +++RL++I QE V
Sbjct: 126 QALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIANQEKV 185
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARL 245
D +ALE + + S GDMRRAI LQ+ A L
Sbjct: 186 EVDEEALEAIHDLSEGDMRRAINILQAAAAL 216
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEKLLKV--- 375
+ALE + + S GDMRRAI LQ+ A L G V D V +V G+ I +++++
Sbjct: 190 EALEAIHDLSEGDMRRAINILQAAAAL----GRVTVDSVYKVVGLAHPREIRQMIQLALA 245
Query: 376 -DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNARLQD 433
+ EK + +I S + Q H + S + D+ K +I + E RL +
Sbjct: 246 GNFTDAREKLRKLMINYGLSGVDVIKQVHREIFSTDIKIPDEFKIIIADLAGEIQFRLVE 305
Query: 434 GASEYIQI 441
GA + IQ+
Sbjct: 306 GADDEIQL 313
>gi|63102390|gb|AAH95222.1| Rfc5 protein [Danio rerio]
gi|182889646|gb|AAI65456.1| Replication factor C (activator 1) 5 [Danio rerio]
Length = 334
Score = 234 bits (596), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 119/239 (49%), Positives = 163/239 (68%), Gaps = 12/239 (5%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
T ++RN +PWVEKYRP+T+DD+I Q+++S ++K +S LPH LFYGPPGTGKTST+
Sbjct: 7 TQPQSRN--LPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTI 64
Query: 84 IAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
+A QL+ D + +LELNASDDRGI V+R + +FA T + F + FK+VI
Sbjct: 65 LACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFAS-TRTIFKKG------FKLVI 117
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL++N M+
Sbjct: 118 LDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMI 177
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
RL+++ +QES+ ++ +V S GDMRR++ LQS G + E V TG
Sbjct: 178 PRLEHVIQQESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYG--KVTEETVYTCTG 234
>gi|268569884|ref|XP_002648361.1| C. briggsae CBR-RFC-4.2 protein [Caenorhabditis briggsae]
gi|268573696|ref|XP_002641825.1| C. briggsae CBR-RFC-4.1 protein [Caenorhabditis briggsae]
Length = 335
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 116/223 (52%), Positives = 155/223 (69%), Gaps = 4/223 (1%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
+ K + W EKYRPKT+DD+ Q+EVV++LK L G DLPH LFYGPPGTGKTST +A C
Sbjct: 12 KQKVLTWTEKYRPKTLDDIAHQEEVVTMLKGALQGKDLPHLLFYGPPGTGKTSTALAFCR 71
Query: 89 QLF-GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
QLF ++R+R+L+LNASD+RGI V+R K++ F++ T N++ KI+ILDE D
Sbjct: 72 QLFPSSIFRDRVLDLNASDERGISVVRQKIQAFSKTTLGSSNKED--VLRLKIIILDEVD 129
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQAA+RR +E +K+TRF LICNYVS +I P+ SRC+KFRFK L + RL+
Sbjct: 130 AMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEVQVQRLRT 189
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR-LKGGE 249
IC+ E L+ ++E S GD+RRA+ LQS A LK G+
Sbjct: 190 ICDAEGTPMSEDELKQVMEYSEGDLRRAVCTLQSLAPILKNGD 232
>gi|51467970|ref|NP_001003862.1| replication factor C subunit 5 [Danio rerio]
gi|49618977|gb|AAT68073.1| replication factor C subunit RFC5 [Danio rerio]
Length = 334
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 119/239 (49%), Positives = 162/239 (67%), Gaps = 12/239 (5%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
T + RN +PWVEKYRP+T+DD+I Q+++S ++K +S LPH LFYGPPGTGKTST+
Sbjct: 7 TQPQARN--LPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTI 64
Query: 84 IAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
+A QL+ D + +LELNASDDRGI V+R + +FA T + F + FK+VI
Sbjct: 65 LACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFAS-TRTIFKKG------FKLVI 117
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL++N M+
Sbjct: 118 LDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMI 177
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
RL+++ +QES+ ++ +V S GDMRR++ LQS G + E V TG
Sbjct: 178 PRLEHVIQQESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYG--KVTEETVYTCTG 234
>gi|397621040|gb|EJK66073.1| hypothetical protein THAOC_13022 [Thalassiosira oceanica]
Length = 363
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 129/322 (40%), Positives = 184/322 (57%), Gaps = 42/322 (13%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF-G 92
PWVEKYRP++++DV Q E++S L + LPH LFYGPPG ST C QL+
Sbjct: 9 PWVEKYRPRSLEDVSHQTEIISTLTNAVETNRLPHLLFYGPPGGRFHSTH--KCRQLYEP 66
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ-----------------QTASGFNQDGK-- 133
+ R+LELNASD+RGI V+RDK+K FA + G D +
Sbjct: 67 SQLKRRVLELNASDERGISVVRDKIKHFASLAIGSSSGGGSKKNFFAKKGDGEAMDAEEA 126
Query: 134 -----PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRC 188
P PPFKI+ILDEAD++T AQAALRR +E +K TRF LICNYV+ II+PL SRC
Sbjct: 127 PSKKYPNPPFKIIILDEADTVTRDAQAALRRVIEAYSKVTRFVLICNYVTRIIEPLASRC 186
Query: 189 SKFRFKPLAENTMLTRLQYICEQESVMCDF------KALETLVETSGGDMRRAITCLQSC 242
+KFRF PL E +M R+ YI +QE C F + ++ ++ S GDMRRA+T LQS
Sbjct: 187 AKFRFAPLPEASMKERIMYISKQEQ--CHFEDEKEAEVIDEILTLSQGDMRRAVTTLQSA 244
Query: 243 ARLKG---GEGIVNEDVLEVTGVIPKPWIEKL---LKVDSFQVLEKYI-EDLILEAYSAT 295
L G G+ I + E+ G+ P I+ L L+ F + ++ E++++E ++A
Sbjct: 245 HSLSGGKDGDPIKKASIAEMAGLPPPKLIDDLVAILQTKRFDAMRDFVRENIVMEGFAAE 304
Query: 296 QLFDQFHDIVMLASSLSDKQKA 317
+ +++ ++D+ K+
Sbjct: 305 YVLSALMAKIIIMDDVTDEAKS 326
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 76/139 (54%), Gaps = 7/139 (5%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGG---EGIVNEDVLEVTGVIPNPWIEKL---LKV 375
++ ++ S GDMRRA+T LQS L GG + I + E+ G+ P I+ L L+
Sbjct: 223 IDEILTLSQGDMRRAVTTLQSAHSLSGGKDGDPIKKASIAEMAGLPPPKLIDDLVAILQT 282
Query: 376 DSFQVLEKYI-EDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
F + ++ E++++E ++A + ++ ++D+ K+ I K+AE + L DG
Sbjct: 283 KRFDAMRDFVRENIVMEGFAAEYVLSALMAKIIIMDDVTDEAKSKIAIKVAESDKNLIDG 342
Query: 435 ASEYIQILDLGSIVIKANK 453
+ E +Q+LD+ S+ ++ K
Sbjct: 343 SDETLQLLDVCSLALQNMK 361
>gi|288931716|ref|YP_003435776.1| Replication factor C [Ferroglobus placidus DSM 10642]
gi|288893964|gb|ADC65501.1| Replication factor C [Ferroglobus placidus DSM 10642]
Length = 321
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 111/211 (52%), Positives = 144/211 (68%), Gaps = 7/211 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRPKT+D+V+ Q E++ LK + ++PH LF GPPGTGKT+T IA LFG++
Sbjct: 6 WVEKYRPKTLDEVVGQDEIIQRLKSYVKQKNIPHLLFAGPPGTGKTATAIALARDLFGEV 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE +E+NASD+RGI V+R K+K FA+ G PFKI+ LDEAD++T AQ
Sbjct: 66 WRENFIEMNASDERGIDVVRHKIKEFARTAPIG-------GAPFKIIFLDEADALTADAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTME +K RF L CNYVS II+P+ SRC+ F+FKP+ + M RL+ I E E +
Sbjct: 119 AALRRTMEMYSKVCRFILSCNYVSRIIEPIQSRCAVFKFKPVPKEAMKKRLKEIAENEGL 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARL 245
D +ALE L+ SGGD R+AI LQ A L
Sbjct: 179 EIDDEALEVLIYISGGDFRKAINALQGAAAL 209
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/127 (33%), Positives = 68/127 (53%), Gaps = 9/127 (7%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL----LKV 375
+ALE L+ SGGD R+AI LQ A L + I E + ++T + K+ LK
Sbjct: 183 EALEVLIYISGGDFRKAINALQGAAALD--KRITPEILYQITATARPEELRKIIDTALKG 240
Query: 376 DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
+ Q + +E+L+ E S + Q +M S+L +K K ++++KL E + RL +G
Sbjct: 241 NYLQA-KDMLENLMAEYGMSGEDVVSQLFREIMY-SNLDEKLKVVLIDKLGEIDFRLTEG 298
Query: 435 ASEYIQI 441
ASE IQ+
Sbjct: 299 ASELIQL 305
>gi|326429717|gb|EGD75287.1| replication factor C subunit 5 [Salpingoeca sp. ATCC 50818]
Length = 330
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/286 (44%), Positives = 180/286 (62%), Gaps = 16/286 (5%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTS 81
+++S T N +PWVEKYRP ++D ++ +E++ +++ + LPH LFYGPPGTGKTS
Sbjct: 1 MTSSAPTTN--LPWVEKYRPDSLDQLVSHKEIIDTIQRFVDEKRLPHLLFYGPPGTGKTS 58
Query: 82 TMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIV 141
T+ A QL+G Y+ +LELNASDDRGI V+R+++KTFA T + F+ FK++
Sbjct: 59 TIKACAKQLYGKAYKSMVLELNASDDRGIGVVREQIKTFAS-TKTVFSAG------FKLI 111
Query: 142 ILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTM 201
ILDEAD+MT+ AQAALRR +EK TK TRFCLICNYVS I L SRC++FRF PLA M
Sbjct: 112 ILDEADAMTNDAQAALRRVIEKYTKHTRFCLICNYVSKISPALQSRCTRFRFAPLATEHM 171
Query: 202 LTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
+ ++Q + + E + +E LV+ + GDMR+A+ LQS + +E V TG
Sbjct: 172 IQQVQRVIDAEHIETTPAGIEALVKLASGDMRKALNILQST--FMAFNKVNDEGVYLCTG 229
Query: 262 VIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDI 304
IE +++V +SF+ + I ++ E A Q D HD+
Sbjct: 230 TPLPADIEAIVEVMLNESFKTAFRKIMEIKTEQGLALQ--DILHDV 273
Score = 45.4 bits (106), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
+E LV+ + GDMR+A+ LQS + +E V TG IE +++V +S
Sbjct: 190 GIEALVKLASGDMRKALNILQST--FMAFNKVNDEGVYLCTGTPLPADIEAIVEVMLNES 247
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDI--VMSASSLSDKQKALILEKLAECNARLQDGA 435
F+ + I ++ E A Q D HD+ + + + L+L++LA+ RL GA
Sbjct: 248 FKTAFRKIMEIKTEQGLALQ--DILHDVHEFIHRLDIPTASRLLLLDRLAQIEERLAYGA 305
Query: 436 SEYIQILDL 444
+E Q+ DL
Sbjct: 306 NERAQLADL 314
>gi|449548327|gb|EMD39294.1| hypothetical protein CERSUDRAFT_152406 [Ceriporiopsis subvermispora
B]
Length = 357
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 113/231 (48%), Positives = 158/231 (68%), Gaps = 18/231 (7%)
Query: 23 STSGKTRNKPV-----------PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLF 71
+T GK ++K V PWVEKYRP T+DDV+ +++ S ++K + LPH LF
Sbjct: 18 TTKGKGKSKAVDANEHYDDDNLPWVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLF 77
Query: 72 YGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131
YGPPGTGKTST++A +++G YR++ILELNASDDRGI V+R+++K FA +T + F++
Sbjct: 78 YGPPGTGKTSTILAVARRIYGSEYRKQILELNASDDRGIDVVREQIKNFA-ETRTLFSKG 136
Query: 132 GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
FK++ILDEAD MT AAQAALRR +E+ TK+ RFC+ICNYV+ I+ + SRC++F
Sbjct: 137 ------FKLIILDEADMMTTAAQAALRRVIEQYTKNVRFCIICNYVNKIVPAIQSRCTRF 190
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
RF PL + + RLQ + E E V + L++ S GDMRRA+ LQ+C
Sbjct: 191 RFSPLPISEVEKRLQKVIESEGVKLTDDGKKALLKLSKGDMRRALNVLQAC 241
>gi|390938548|ref|YP_006402286.1| replication factor C [Desulfurococcus fermentans DSM 16532]
gi|390191655|gb|AFL66711.1| Replication factor C [Desulfurococcus fermentans DSM 16532]
Length = 326
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 121/228 (53%), Positives = 153/228 (67%), Gaps = 10/228 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP+T+D+V+ Q+EVV LKK + ++PH LF GPPGTGKT+ H L+GD
Sbjct: 9 WAEKYRPRTLDEVVNQKEVVVRLKKFVEEKNIPHMLFAGPPGTGKTTIAHCLAHDLYGDD 68
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
YR+ +LELNASD+R I+VIR KVK FA+ G PFKIV+LDEAD+MT AQ
Sbjct: 69 YRKYMLELNASDERKIEVIRGKVKEFARARVVG-------DVPFKIVLLDEADNMTADAQ 121
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME + +TRF L NY S II+P+ SR + FRF PL+ ++ RL+YIC E +
Sbjct: 122 QALRRLMELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLSREDVVGRLKYICNAEKI 181
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
C KALET+ E S GDMRRAI LQ+ A L GE +V E V +V G+
Sbjct: 182 ECAEKALETIYELSEGDMRRAINILQTAAAL--GE-VVEEAVYKVLGM 226
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 8/127 (6%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VD 376
KALET+ E S GDMRRAI LQ+ A L GE +V E V +V G+ + +++
Sbjct: 186 KALETIYELSEGDMRRAINILQTAAAL--GE-VVEEAVYKVLGMAHPREVREMINTALAG 242
Query: 377 SFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNARLQDG 434
+F + L++E S + Q H + S + D+ + LI + E RL +G
Sbjct: 243 NFTEARNKLRTLMIEYGLSGLDIVKQIHREIFSQDVKIPDEIRVLIADLAGEIQFRLVEG 302
Query: 435 ASEYIQI 441
A + IQ+
Sbjct: 303 ADDEIQL 309
>gi|218884000|ref|YP_002428382.1| replication factor C small subunit [Desulfurococcus kamchatkensis
1221n]
gi|218765616|gb|ACL11015.1| replication factor C small subunit [Desulfurococcus kamchatkensis
1221n]
Length = 326
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 121/228 (53%), Positives = 153/228 (67%), Gaps = 10/228 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP+T+D+V+ Q+EVV LKK + ++PH LF GPPGTGKT+ H L+GD
Sbjct: 9 WAEKYRPRTLDEVVNQKEVVVRLKKFVEEKNIPHMLFAGPPGTGKTTIAHCLAHDLYGDD 68
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
YR+ +LELNASD+R I+VIR KVK FA+ G PFKIV+LDEAD+MT AQ
Sbjct: 69 YRKYMLELNASDERKIEVIRGKVKEFARTRVVG-------DVPFKIVLLDEADNMTADAQ 121
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME + +TRF L NY S II+P+ SR + FRF PL+ ++ RL+YIC E +
Sbjct: 122 QALRRLMELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLSREDVVGRLKYICNAEKI 181
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
C KALET+ E S GDMRRAI LQ+ A L GE +V E V +V G+
Sbjct: 182 ECAEKALETIYELSEGDMRRAINILQTAAAL--GE-VVEEAVYKVLGM 226
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 8/127 (6%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VD 376
KALET+ E S GDMRRAI LQ+ A L GE +V E V +V G+ + +++
Sbjct: 186 KALETIYELSEGDMRRAINILQTAAAL--GE-VVEEAVYKVLGMAHPREVREMINTALAG 242
Query: 377 SFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNARLQDG 434
+F + L++E S + Q H + S + D+ + LI + E RL +G
Sbjct: 243 NFTEARNKLRTLMIEYGLSGLDIVKQIHREIFSQDVKIPDEIRVLIADLAGEIQFRLVEG 302
Query: 435 ASEYIQI 441
A + IQ+
Sbjct: 303 ADDEIQL 309
>gi|330834115|ref|YP_004408843.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
gi|329566254|gb|AEB94359.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
Length = 325
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 159/241 (65%), Gaps = 12/241 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP+T+DD++ Q+++V LK+ + ++PH LF GPPGTGKT++ +A H L+G+
Sbjct: 6 WAEKYRPRTLDDIVNQKDIVDRLKRFVKERNMPHLLFAGPPGTGKTTSALALVHDLYGEN 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
Y + LELNASD+ GI VIR KVK FA+ G PFK V+LDEAD+MT AQ
Sbjct: 66 YDQFFLELNASDENGINVIRTKVKDFARTVTPG-------NVPFKTVLLDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRRTME T+STRF L CNY+S II P+ SR + FRF PL + ++ RL+ I ++E V
Sbjct: 119 QALRRTMELYTESTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVILRLENILKEEKV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPKPWIEKLLK 273
D K+LE + + +GGDMR+AI LQ+ A G V D VL+V G+ I +++K
Sbjct: 179 QYDVKSLEVVYDVTGGDMRKAINVLQAAA----AYGKVTTDSVLKVLGLAQPKEIREMVK 234
Query: 274 V 274
+
Sbjct: 235 L 235
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 84/174 (48%), Gaps = 22/174 (12%)
Query: 283 YIEDLILEAYSATQLFDQF----HDIVMLASSLSDKQKALF--KALETLVETSGGDMRRA 336
Y+ +I S T LF + D+++ ++ ++K + K+LE + + +GGDMR+A
Sbjct: 140 YLSKIIDPIQSRTALFRFYPLKKEDVILRLENILKEEKVQYDVKSLEVVYDVTGGDMRKA 199
Query: 337 ITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEKLLK-------VDSFQVLEKYIEDL 388
I LQ+ A G V D VL+V G+ I +++K +DS L I D
Sbjct: 200 INVLQAAA----AYGKVTTDSVLKVLGLAQPKEIREMVKLALQGKFLDSRSKLMSLIIDY 255
Query: 389 ILEAYSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
L S + Q H DI + + ++ + L+ + L E R+ +GA + IQ+
Sbjct: 256 GL---SGEDIVKQVHRDIFSNEYQIPEELRVLMSDYLGEVEFRIIEGADDEIQL 306
>gi|353238813|emb|CCA70747.1| probable RFC3-DNA replication factor C, 40 kDa subunit
[Piriformospora indica DSM 11827]
Length = 346
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 113/237 (47%), Positives = 156/237 (65%), Gaps = 10/237 (4%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N +PWVEKYRP T+DDV+ +++ + +++ + LPH LFYGPPGTGKTST+IA +
Sbjct: 25 NNDLPWVEKYRPITLDDVVSHKDITTTIEQFIQKNRLPHLLFYGPPGTGKTSTIIAVARR 84
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
L+G Y+++ILELNASDDRGI V+RD++K FA+ G G FK++ILDEAD M
Sbjct: 85 LYGANYKKQILELNASDDRGIDVVRDQIKGFAE--TRGVFAKG-----FKLIILDEADMM 137
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AAQAALRR +E+ T++ RFC+ICNYV+ I + SRC++FRF PL + + RLQ +
Sbjct: 138 TQAAQAALRRVIEQYTRNVRFCIICNYVNKITPAIQSRCTRFRFSPLPVSEVEKRLQTVI 197
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP 266
E E V + E L++ S GDMRRA+ LQ+C I +E+ + P P
Sbjct: 198 ENEGVKVSPEGKEALLKLSRGDMRRALNVLQAC---HAAYDITDEEAIYTCTGNPHP 251
>gi|118431491|ref|NP_147997.2| replication factor C small subunit [Aeropyrum pernix K1]
gi|150421641|sp|Q9YBS7.3|RFCS_AERPE RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|116062816|dbj|BAA80521.2| replication factor C small subunit [Aeropyrum pernix K1]
Length = 325
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/211 (52%), Positives = 147/211 (69%), Gaps = 7/211 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+++DD+++Q+ VV LK+ + ++PH LF GPPGTGKT+ A H LFG+
Sbjct: 9 WVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFGEN 68
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
YR+ +LELNASD+RGI VIR+KVK FA+ P PFKIV+LDEAD+MT AQ
Sbjct: 69 YRQYMLELNASDERGINVIREKVKEFARSRTP-------PEIPFKIVLLDEADNMTSDAQ 121
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME + TRF LI NY S II P+ SRC+ FRF+PL++ ++ RL+YI E E V
Sbjct: 122 QALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENEGV 181
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARL 245
+ +AL+ + E S GDMR+AI LQ+ + L
Sbjct: 182 DYEEEALDAIYEISEGDMRKAINVLQAASYL 212
>gi|300122519|emb|CBK23089.2| unnamed protein product [Blastocystis hominis]
Length = 341
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/248 (46%), Positives = 162/248 (65%), Gaps = 10/248 (4%)
Query: 19 KTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTG 78
T+++ +N +PWVEKYRP ++D+++ Q ++V+ +K+ + G LPH LFYGPPGTG
Sbjct: 7 NTTITRGDFEQNDALPWVEKYRPTSLDNIVSQDDIVATIKRFIEGNRLPHLLFYGPPGTG 66
Query: 79 KTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPF 138
KT+T++A L+G + +LELNASDDRGI V+R+++K FA T F+
Sbjct: 67 KTTTIMAVAKMLYGSSHSSMVLELNASDDRGINVVREQIKVFA-GTKKLFHTG------V 119
Query: 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAE 198
K+VILDEAD+MT+AAQ ALRR +EK +++TRFCLICNYVS II + SRC++FRF+PL
Sbjct: 120 KLVILDEADNMTNAAQFALRRIIEKYSQNTRFCLICNYVSEIIPAVQSRCTRFRFQPLNP 179
Query: 199 NTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE 258
+ +RL YI QE+V D + L+ S GDMRR I LQ+ A G + E V
Sbjct: 180 QLIRSRLLYILRQENVEFDDDGVAALLALSRGDMRRVINVLQATAMAFG--KVTAEHVYR 237
Query: 259 VTGVIPKP 266
G +P P
Sbjct: 238 CAG-MPSP 244
>gi|374633940|ref|ZP_09706305.1| DNA polymerase III, gamma/tau subunit [Metallosphaera
yellowstonensis MK1]
gi|373523728|gb|EHP68648.1| DNA polymerase III, gamma/tau subunit [Metallosphaera
yellowstonensis MK1]
Length = 326
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 162/241 (67%), Gaps = 10/241 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
V W EKYRPK++DD++ Q+++V LKK + ++PH LF GPPGTGKT++ +A + L+G
Sbjct: 5 VLWAEKYRPKSLDDIVNQKDIVERLKKFVKEKNMPHLLFAGPPGTGKTTSALALVYDLYG 64
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ YR+ LELNASD+RGI VIR+KVK FA+ QD PFK V+LDEAD+MT
Sbjct: 65 ENYRQYFLELNASDERGIDVIRNKVKDFARTVTP---QD----VPFKTVLLDEADNMTAD 117
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME T++TRF L CNY+S II P+ SR + FRF PL + +++RL++I + E
Sbjct: 118 AQQALRRTMELYTETTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVISRLEFIAKNE 177
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
V D KAL+T+ E + GDMR+AI LQ+ + + E V +V G+ I +++
Sbjct: 178 KVEYDPKALDTIYEITSGDMRKAINILQASS---AYGKVTTEAVYKVLGMAQPKEIREMV 234
Query: 273 K 273
K
Sbjct: 235 K 235
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 14/170 (8%)
Query: 283 YIEDLILEAYSATQLFDQF----HDIVMLASSLSDKQKALF--KALETLVETSGGDMRRA 336
Y+ +I S T LF + D++ ++ +K + KAL+T+ E + GDMR+A
Sbjct: 141 YLSKIIDPIQSRTALFRFYPLKKEDVISRLEFIAKNEKVEYDPKALDTIYEITSGDMRKA 200
Query: 337 ITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSF-QVLEKYIEDLILEA 392
I LQ+ + + E V +V G+ I +++K F + K + +I
Sbjct: 201 INILQASS---AYGKVTTEAVYKVLGMAQPKEIREMVKSALQGRFTEARSKLLSLMINYG 257
Query: 393 YSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
S + Q H DI + + ++ + ++ + + E R+ +GA + IQ+
Sbjct: 258 LSGEDIVKQVHRDIFSNEFQIPEELRVIMADYVGEVEYRIIEGADDEIQL 307
>gi|403160320|ref|XP_003320851.2| replication factor C subunit 3/5 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169507|gb|EFP76432.2| replication factor C subunit 3/5 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 352
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 184/310 (59%), Gaps = 24/310 (7%)
Query: 11 GKDAPSSSKTSVSTSGKTR---NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLP 67
GK + ++ +G ++ + +PWVEKYRP T+DDV+ Q+++ ++K +S LP
Sbjct: 4 GKGKEIGKQPEIAANGASKPASKEHLPWVEKYRPSTLDDVVSHQDIIQTIQKFISANQLP 63
Query: 68 HFLFYGPPGTGKTSTMIAACHQLFGD--MYRERILELNASDDRGIQVIRDKVKTFAQQTA 125
H LFYGPPGTGKTST++A QLF ++ ILELNASDDRGI V+R+++K FA +A
Sbjct: 64 HLLFYGPPGTGKTSTILAVARQLFQTPMSFKNNILELNASDDRGIDVVREQIKNFA--SA 121
Query: 126 SGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLT 185
G FK++ILDEAD MT AAQ+ALRR +E+ TK+ RFC+ICNYV+ I +
Sbjct: 122 RMVFSSG-----FKLIILDEADQMTQAAQSALRRVIEQYTKNVRFCIICNYVNRINPAIQ 176
Query: 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245
SRC++FRF PL + R+ ++ + ESV + L+ GDMRR + +Q+C
Sbjct: 177 SRCTRFRFGPLDHPEIERRIAHVADAESVKISDDGRKALLNLCKGDMRRVLNVMQAC--- 233
Query: 246 KGGEGIVNED-VLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ----- 296
G G V+ED V E TG IEK+++ D FQ K I+D+ + A Q
Sbjct: 234 HSGYGKVDEDAVYECTGSPHPKQIEKIVESMMNDEFQTSFKRIQDIKINYGLALQDIISG 293
Query: 297 LFDQFHDIVM 306
++D IV
Sbjct: 294 IYDYLRTIVF 303
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 20/144 (13%)
Query: 323 ETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNP-WIEKLLKV---DS 377
+ L+ GDMRR + +Q+C G G V+ED V E TG P+P IEK+++ D
Sbjct: 213 KALLNLCKGDMRRVLNVMQAC---HSGYGKVDEDAVYECTGS-PHPKQIEKIVESMMNDE 268
Query: 378 FQVLEKYIEDLILEAYSATQ-----LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQ 432
FQ K I+D+ + A Q ++D IV ++ + IL++L++ RL
Sbjct: 269 FQTSFKRIQDIKINYGLALQDIISGIYDYLRTIVFEKNA-----QIYILDQLSQIEHRLS 323
Query: 433 DGASEYIQILD-LGSIVIKANKTA 455
GA+E IQ+ LGS I T+
Sbjct: 324 TGATEKIQLSSLLGSFRIAVEITS 347
>gi|227830342|ref|YP_002832122.1| replication factor C small subunit [Sulfolobus islandicus L.S.2.15]
gi|229579159|ref|YP_002837557.1| replication factor C small subunit [Sulfolobus islandicus
Y.G.57.14]
gi|284997767|ref|YP_003419534.1| replication factor C [Sulfolobus islandicus L.D.8.5]
gi|227456790|gb|ACP35477.1| Replication factor C [Sulfolobus islandicus L.S.2.15]
gi|228009873|gb|ACP45635.1| Replication factor C [Sulfolobus islandicus Y.G.57.14]
gi|284445662|gb|ADB87164.1| Replication factor C [Sulfolobus islandicus L.D.8.5]
Length = 330
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 108/211 (51%), Positives = 145/211 (68%), Gaps = 7/211 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+ W EKYRP+T+DD++ Q+E++ LKK + ++PH LF GPPGTGKT+ +A H L+G
Sbjct: 8 ILWAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYG 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D Y E LELNASD+RGI VIR+KVK FA+ PFK+V+LDEAD+MT
Sbjct: 68 DNYVEYFLELNASDERGIDVIRNKVKEFARTVIPS-------NVPFKVVLLDEADNMTAD 120
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME T++TRF L CNY+S II+P+ SR + FRF PL + ++ RL YI + E
Sbjct: 121 AQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNE 180
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCA 243
D KALET+ + + GDMR++I LQ+ +
Sbjct: 181 KAEYDQKALETIYDITMGDMRKSINILQAAS 211
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 15/183 (8%)
Query: 283 YIEDLILEAYSATQLFDQF----HDIVMLASSLSDKQKALF--KALETLVETSGGDMRRA 336
Y+ +I S T LF + D+V ++ +KA + KALET+ + + GDMR++
Sbjct: 144 YLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNEKAEYDQKALETIYDITMGDMRKS 203
Query: 337 ITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSF-QVLEKYIEDLILEA 392
I LQ+ + I E V +V G+ + +++ + F Q EK L+
Sbjct: 204 INILQAAS---AYGKISVEAVFKVLGLAQPKEVREMISLALQGKFTQAREKLRTLLVTYG 260
Query: 393 YSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILD-LGSIVIK 450
S + Q H +I S +S++ + L+L+ + E R+ +GA + IQ+ L + I
Sbjct: 261 LSGEDIIKQIHREITSSELQISEELRVLLLDYIGETEFRIIEGADDEIQLSALLAKMAIY 320
Query: 451 ANK 453
NK
Sbjct: 321 GNK 323
>gi|307596342|ref|YP_003902659.1| replication factor C [Vulcanisaeta distributa DSM 14429]
gi|307551543|gb|ADN51608.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
Length = 342
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 142/209 (67%), Gaps = 7/209 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP IDD+I+Q+EV +K+ L ++PH LFYGPPGTGKT+ +A +L+GD
Sbjct: 8 WVEKYRPSRIDDIIDQEEVKERIKQFLKTGNMPHMLFYGPPGTGKTTMALAIARELYGDA 67
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE +LELNASD+RGI IR++VK FA+ G P+K+VILDEAD+MT AQ
Sbjct: 68 WRENVLELNASDERGITTIRERVKEFARTAPMG-------KAPYKLVILDEADNMTSDAQ 120
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME TRF LI NYVS II P+ SRC+ FRF PL ++ +L RL+ I +E V
Sbjct: 121 QALRRMMEMYANVTRFILIANYVSRIIDPIQSRCAMFRFSPLPKDAVLGRLREIASKEGV 180
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCA 243
+ALE + + S GDMR+AI LQ+ A
Sbjct: 181 KVTNEALEAIWDVSQGDMRKAINTLQAAA 209
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 7/131 (5%)
Query: 316 KALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 375
K +ALE + + S GDMR+AI LQ+ A + I E + + G I I L+
Sbjct: 181 KVTNEALEAIWDVSQGDMRKAINTLQAAA--ATAKEITPEVIYKTVGYIEPKDIVDLVNT 238
Query: 376 ----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNAR 430
D + +K + S T++ +M + ++ D+ K I E A+ + R
Sbjct: 239 VFSGDFVKARDKLRTLMYEHGVSGTEILRAIQRQIMGGAINVPDEAKVEIAEAAADIDYR 298
Query: 431 LQDGASEYIQI 441
L +G+ E IQ+
Sbjct: 299 LTEGSDEEIQL 309
>gi|237839531|ref|XP_002369063.1| replication factor C small subunit, putative [Toxoplasma gondii
ME49]
gi|211966727|gb|EEB01923.1| replication factor C small subunit, putative [Toxoplasma gondii
ME49]
gi|221483291|gb|EEE21610.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Toxoplasma gondii GT1]
gi|221507780|gb|EEE33367.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Toxoplasma gondii VEG]
Length = 357
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/291 (41%), Positives = 183/291 (62%), Gaps = 7/291 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPWVEKYRP+ ++D+ Q E +L++ L ++PH LFYGPPGTGKTS +A +LFG
Sbjct: 31 VPWVEKYRPRRVEDMAHQVEPKKMLRRILETGNMPHLLFYGPPGTGKTSAALALVRELFG 90
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASG-FNQD-GKPCPPFKIVILDEADS 148
+ + R+LELNASDDRGI+V+R+++K + + A G N + G+ P +KIVILDEAD
Sbjct: 91 REEAKNRLLELNASDDRGIKVVRERIKQYTKTNIAKGKINPETGREMPTWKIVILDEADM 150
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRR ME +++TRF +ICNYV II P+ SRCS RF+P+A + R+++I
Sbjct: 151 MTQDAQSALRRIMEAFSRTTRFIIICNYVHRIIDPIFSRCSPHRFEPVARDAQEARIRHI 210
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWI 268
C+ E ++ A++ L+ S GD+RRA+T LQS A + + + + +LEV G P +
Sbjct: 211 CDSEGLVVTSGAVDALLRISQGDLRRAVTLLQSAASIY-DDNLHEDAILEVAGQPPARIV 269
Query: 269 EKLLKV--DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
L+ S ++++I + + L + V+++ L D QKA
Sbjct: 270 TDFLRACQASPSQASSEVDNVISQGWDVCLLLQEMIRQVVVSPHLKDLQKA 320
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 3/127 (2%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV--DSF 378
A++ L+ S GD+RRA+T LQS A + + + + +LEV G P + L+ S
Sbjct: 222 AVDALLRISQGDLRRAVTLLQSAASIYD-DNLHEDAILEVAGQPPARIVTDFLRACQASP 280
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
++++I + + L + V+ + L D QKA ++ +A+ + GAS Y
Sbjct: 281 SQASSEVDNVISQGWDVCLLLQEMIRQVVVSPHLKDLQKARVINDIAQKEFAVFQGASPY 340
Query: 439 IQILDLG 445
+Q+L L
Sbjct: 341 LQLLSLS 347
>gi|146304798|ref|YP_001192114.1| replication factor C small subunit [Metallosphaera sedula DSM 5348]
gi|145703048|gb|ABP96190.1| replication factor C small subunit [Metallosphaera sedula DSM 5348]
Length = 326
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 110/240 (45%), Positives = 159/240 (66%), Gaps = 10/240 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP+++DD++ Q+++V LK + ++PH LF GPPGTGKT++ +A H L+G+
Sbjct: 7 WAEKYRPRSLDDIVNQRDIVERLKHFVKEKNMPHLLFAGPPGTGKTTSALALVHDLYGEN 66
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
Y + +LELNASD+RGI VIR+KVK FA+ G PFK V+LDEAD+MT AQ
Sbjct: 67 YEQYLLELNASDERGIDVIRNKVKEFARTVTPG-------SVPFKTVLLDEADNMTADAQ 119
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRRTME T++TRF L CNY+S II P+ SR + FRF PL + +++RL++I +QE V
Sbjct: 120 QALRRTMELYTETTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVISRLEFIMKQEGV 179
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
D KAL+ + + + GDMR+AI LQ+ + + E V +V G+ + ++K+
Sbjct: 180 QYDPKALDVIYDVTNGDMRKAINVLQAAS---AYGKVTQEAVFKVLGLAQPKEVRDMVKL 236
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---- 375
KAL+ + + + GDMR+AI LQ+ + + E V +V G+ + ++K+
Sbjct: 184 KALDVIYDVTNGDMRKAINVLQAAS---AYGKVTQEAVFKVLGLAQPKEVRDMVKLALQG 240
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECNARLQDG 434
K + +I S + Q H DI + + ++ + L+ + + E R+ +G
Sbjct: 241 RFMDARSKLLSLIINYGLSGEDIVKQVHRDIFSNEYQIPEELRVLLTDYIGEVEFRIIEG 300
Query: 435 ASEYIQI 441
A + IQ+
Sbjct: 301 ADDEIQL 307
>gi|11499642|ref|NP_070884.1| replication factor C small subunit [Archaeoglobus fulgidus DSM
4304]
gi|42559325|sp|O28219.1|RFCS_ARCFU RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=afRFC small subunit; Short=afRFCsm
gi|110590966|pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
gi|110590967|pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
gi|110590968|pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
gi|110590969|pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
gi|110590970|pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
gi|110590971|pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
gi|110590972|pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
gi|110590973|pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
gi|110590974|pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
gi|2648471|gb|AAB89191.1| activator 1, replication factor C, 35 KD subunit [Archaeoglobus
fulgidus DSM 4304]
Length = 319
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 114/227 (50%), Positives = 150/227 (66%), Gaps = 9/227 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+T+D+V+ Q EV+ LK + ++PH LF GPPGTGKT+T IA LFG+
Sbjct: 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN 66
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R+ +E+NASD+RGI V+R K+K FA+ G PFKI+ LDEAD++T AQ
Sbjct: 67 WRDNFIEMNASDERGIDVVRHKIKEFARTAPIG-------GAPFKIIFLDEADALTADAQ 119
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTME +KS RF L CNYVS II+P+ SRC+ FRFKP+ + M RL ICE+E V
Sbjct: 120 AALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV 179
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
LE L+ SGGD R+AI LQ A + GE + + + ++T
Sbjct: 180 KITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQITA 224
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
LE L+ SGGD R+AI LQ A + GE + + + ++T + +L++ +
Sbjct: 185 GLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQITATARPEEMTELIQTALKGN 242
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQ-FHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
F + ++ L++E S + Q F +I+ + + D K +++KL E + RL +GA
Sbjct: 243 FMEARELLDRLMVEYGMSGEDIVAQLFREII--SMPIKDSLKVQLIDKLGEVDFRLTEGA 300
Query: 436 SEYIQI 441
+E IQ+
Sbjct: 301 NERIQL 306
>gi|343425514|emb|CBQ69049.1| probable RFC3-DNA replication factor C, 40 kDa subunit [Sporisorium
reilianum SRZ2]
Length = 342
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 127/317 (40%), Positives = 188/317 (59%), Gaps = 19/317 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DD++ +++ S ++ + LPH LFYGPPGTGKTST++A ++FG
Sbjct: 23 LPWVEKYRPATLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIFG 82
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+R +LELNASDDRGI+V+R+++K+FA T S F+ G FK+++LDEAD+MT A
Sbjct: 83 PQFRNSVLELNASDDRGIEVVREQIKSFA-STKSVFSSKGG----FKLIVLDEADAMTQA 137
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +E+ TK+ RFC+ICNYV+ II + SRC++FRF PL + + RL ++ + E
Sbjct: 138 AQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLELDQVEDRLNHVIDTE 197
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW-IEKL 271
E L++ S GDMRRA+ LQ+C + I V TG P P +E +
Sbjct: 198 GCKITQDGKEALLKLSRGDMRRALNVLQACH--AASDNIDETAVYNCTGN-PHPQDVEAV 254
Query: 272 LKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVET 328
LK D F + + + L+ L D + L +++ K+ L+ L +T
Sbjct: 255 LKSMMEDEFTTAFRTVSE--LKTAKGIALADMISGVYDLLATIKLPAKSRIYLLDHLADT 312
Query: 329 -----SGGDMRRAITCL 340
+GG + +T L
Sbjct: 313 EHRLSTGGSEKIQLTAL 329
>gi|307595017|ref|YP_003901334.1| replication factor C [Vulcanisaeta distributa DSM 14429]
gi|307550218|gb|ADN50283.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
Length = 327
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 113/225 (50%), Positives = 153/225 (68%), Gaps = 10/225 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
V WVEKYRP IDD+I+Q V + +K+ L+ ++PH LF+GPPGTGKT+ +A +L+G
Sbjct: 6 VLWVEKYRPSRIDDIIDQDHVKARVKEMLANGNIPHLLFFGPPGTGKTTMALAIARELYG 65
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D +RE +LELNASD+RGI +IR+KVK FA+ + PF+++ILDEAD+MT
Sbjct: 66 DAWRENVLELNASDERGIAMIREKVKEFAKTMPT-------VKAPFRLIILDEADNMTPD 118
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR ME T S RF L+ NY S II+P+ SRCS FRF PL ++ +L RL+ I +E
Sbjct: 119 AQQALRRIMEMYTTSVRFILLANYPSGIIEPIQSRCSLFRFSPLPKDAVLGRLREIASKE 178
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
V ALE + + S GDMR+AI LQ+ A L G+V+E+V+
Sbjct: 179 GVKVTDDALEAIWDVSQGDMRKAINTLQAAASLG---GVVDEEVV 220
>gi|71021079|ref|XP_760770.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
gi|46100247|gb|EAK85480.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
Length = 341
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 115/242 (47%), Positives = 159/242 (65%), Gaps = 9/242 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DD++ +++ S ++ + LPH LFYGPPGTGKTST++A ++FG
Sbjct: 22 LPWVEKYRPATLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIFG 81
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+R +LELNASDDRGI V+R+++K+FA T S F+ G FK+++LDEAD+MT A
Sbjct: 82 PQFRNSVLELNASDDRGIDVVREQIKSFA-STKSVFSSKGG----FKLIVLDEADAMTQA 136
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +E+ TK+ RFC+ICNYV+ II + SRC++FRF PL + + RL ++ E E
Sbjct: 137 AQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLELDQVEDRLNHVIESE 196
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW-IEKL 271
E L++ S GDMRRA+ LQ+C + I V TG P P IE +
Sbjct: 197 GCNITQDGKEALLKLSRGDMRRALNVLQACH--AASDHIDETAVYNCTGN-PHPHDIEAI 253
Query: 272 LK 273
LK
Sbjct: 254 LK 255
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 9/127 (7%)
Query: 323 ETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IEKLLKV---DSF 378
E L++ S GDMRRA+ LQ+C + I V TG P+P IE +LK D F
Sbjct: 206 EALLKLSRGDMRRALNVLQACH--AASDHIDETAVYNCTGN-PHPHDIEAILKSMMEDEF 262
Query: 379 QVLEKYIEDL-ILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
+ L + + + F+D+ ++ L K + +L+ LA+ RL G SE
Sbjct: 263 TTAFWTVSQLKTAKGIALADIITGFYDL-LTTIKLPAKSRIYLLDHLADTEHRLSTGGSE 321
Query: 438 YIQILDL 444
IQ+ L
Sbjct: 322 KIQLTAL 328
>gi|320100775|ref|YP_004176367.1| replication factor C small subunit [Desulfurococcus mucosus DSM
2162]
gi|319753127|gb|ADV64885.1| replication factor C small subunit [Desulfurococcus mucosus DSM
2162]
Length = 347
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 120/228 (52%), Positives = 153/228 (67%), Gaps = 10/228 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP+T+D+V+ Q+E+V LKK + +PH LF GPPGTGKT+ H L+GD
Sbjct: 30 WAEKYRPRTLDEVVNQKEIVVRLKKFVEEKSIPHMLFAGPPGTGKTTMAHCLAHDLYGDD 89
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
Y++ +LELNASD+R I+VIR KVK FA+ G PFKIV+LDEAD+MT AQ
Sbjct: 90 YKKYMLELNASDERKIEVIRGKVKEFARSRVVG-------EVPFKIVLLDEADNMTADAQ 142
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME + +TRF L NY S II+P+ SR + FRF PL + ++ RL+YIC E V
Sbjct: 143 QALRRLMELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLRKEDVVERLRYICNAEKV 202
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
CD +ALET+ E S GDMRRAI LQ+ A L GE +V E V +V G+
Sbjct: 203 KCDERALETIYELSEGDMRRAINILQTTAAL--GE-VVEEAVYKVIGL 247
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 8/135 (5%)
Query: 312 SDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK 371
++K K +ALET+ E S GDMRRAI LQ+ A L GE +V E V +V G+ + +
Sbjct: 199 AEKVKCDERALETIYELSEGDMRRAINILQTTAAL--GE-VVEEAVYKVIGLAHPREVRE 255
Query: 372 LLK---VDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAE 426
+L +F + L++E S + Q H + S + D+ + LI + E
Sbjct: 256 MLNEALSGNFTEARNKLRTLMIEYGLSGVDIIRQIHKEIFSQEVKIPDEMRVLIADLAGE 315
Query: 427 CNARLQDGASEYIQI 441
RL +GA + IQ+
Sbjct: 316 IQFRLVEGADDEIQL 330
>gi|344301880|gb|EGW32185.1| DNA replication factor C [Spathaspora passalidarum NRRL Y-27907]
Length = 323
Score = 231 bits (588), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 149/216 (68%), Gaps = 5/216 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PW+EKYRP+++DD+ QQE+++ + K + LPH LFYGPPGTGKTST+IA +++G
Sbjct: 5 LPWIEKYRPESLDDIYGQQEIITTVHKFIQTGKLPHLLFYGPPGTGKTSTIIAVAREIYG 64
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y+ +LELNASDDRGI V+R+++K FA T FNQ FK++ILDEAD+MT+A
Sbjct: 65 KNYKNMVLELNASDDRGIDVVRNQIKNFA-STRQIFNQGNS----FKLIILDEADAMTNA 119
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ +LRR +EK TK+ RFC++ NY + L SRC++FRF P+ + R++ + +E
Sbjct: 120 AQNSLRRIIEKFTKNCRFCILANYSHKLNPALISRCTRFRFHPIDTEAIRERIKVVITKE 179
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG 248
V D KA++ LV+ S GDMRRA+ LQ+C G
Sbjct: 180 QVDIDAKAVDALVQLSKGDMRRALNVLQACKAATAG 215
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 14/129 (10%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-----IEKLLK 374
KA++ LV+ S GDMRRA+ LQ+C G I + + E G P+P ++ +LK
Sbjct: 186 KAVDALVQLSKGDMRRALNVLQACKAATAGS-IDLDMIYECIGA-PHPQDIETVLDSILK 243
Query: 375 VD---SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 431
D ++ + K+ + + L F DI ++ L++K + IL+ L++ +
Sbjct: 244 DDWTTAYITINKF---KTTKGLALIDLIAGFVDI-LNNYKLNNKTRVGILKGLSDIEYGI 299
Query: 432 QDGASEYIQ 440
G ++ IQ
Sbjct: 300 SKGGNDKIQ 308
>gi|443900350|dbj|GAC77676.1| replication factor C, subunit RFC5 [Pseudozyma antarctica T-34]
Length = 342
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 192/336 (57%), Gaps = 19/336 (5%)
Query: 20 TSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGK 79
T ++S +PWVEKYRP T+DD++ +++ S ++ + LPH LFYGPPGTGK
Sbjct: 10 TDATSSAAPDQDLLPWVEKYRPVTLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGK 69
Query: 80 TSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFK 139
TST++A +++G +R +LELNASD+RGI V+R+++K+FA T S F FK
Sbjct: 70 TSTILAMARKIYGAQFRNSVLELNASDERGIDVVREQIKSFA-STKSVFGAKAG----FK 124
Query: 140 IVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAEN 199
+++LDEAD+MT AAQ ALRR +E+ TK+ RFC+ICNYV+ II + SRC++FRF PL +
Sbjct: 125 LIVLDEADAMTQAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLEPD 184
Query: 200 TMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 259
+ +RLQ++ E E E L++ S GDMRRA+ LQ+C + I V
Sbjct: 185 QVESRLQHVIESEHCNITPGGKEALLKLSRGDMRRALNVLQACH--AASDHIDETAVYNC 242
Query: 260 TGVIPKPW-IEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQ 315
TG P P IE +LK D F I + L+ L D + L +S+
Sbjct: 243 TGN-PHPEDIEAVLKSMMQDEFTTAFNTI--VALKTAKGIALADMISGVYDLLASIKLPP 299
Query: 316 KALFKALETLVET-----SGGDMRRAITCLQSCARL 346
K+ L+ L +T +GG + +T L ++
Sbjct: 300 KSRIYLLDHLADTEHRLSTGGSEKLQLTALLGAVKI 335
>gi|393222049|gb|EJD07533.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 348
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 110/215 (51%), Positives = 153/215 (71%), Gaps = 7/215 (3%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T++ +PWVEKYRP T+DDV+ +++ S ++K + LPH LFYGPPGTGKTST++A
Sbjct: 24 TQDDNLPWVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVA 83
Query: 88 HQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
+++G YR++ILELNASDDRGI V+R++VK FA +T + F++ FK++ILDEAD
Sbjct: 84 RRIYGPDYRKQILELNASDDRGIDVVREQVKQFA-ETRTLFSKG------FKLIILDEAD 136
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
MT AAQAALRR +E+ TK+ RFC+ICNYV+ I + SRC++FRF PL + RL+
Sbjct: 137 MMTQAAQAALRRVIEQYTKNVRFCIICNYVNKITPAVQSRCTRFRFSPLPIKEVERRLEG 196
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E ESV + L++ S GDMRRA+ LQ+C
Sbjct: 197 VIEAESVKLTPDGKDALLKLSKGDMRRALNVLQAC 231
>gi|84998148|ref|XP_953795.1| replication factor C subunit (RPC2 ) [Theileria annulata]
gi|65304792|emb|CAI73117.1| replication factor C subunit (RPC2 homologue) , putative [Theileria
annulata]
Length = 336
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 125/297 (42%), Positives = 184/297 (61%), Gaps = 15/297 (5%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K VPWVEKYRPK I DVI Q + VS++++ + ++PH +F+GPPGTGKTS +A Q+
Sbjct: 5 KDVPWVEKYRPKKISDVIFQTQAVSIMEQIIETFNMPHMIFHGPPGTGKTSAALAMARQI 64
Query: 91 FG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN---QDGKPCPPFKIVILDEA 146
+G + RER+LELNASD+RGI V+RD++KT+ + S + + P +K++ILDEA
Sbjct: 65 YGLEGMRERVLELNASDERGIDVVRDRIKTYTRINISNNRVNPETNRVMPNYKMIILDEA 124
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D +T AQAALRR +E + +RF LICNY+ II P+ SRCS F FKP+ N+ + RL+
Sbjct: 125 DMITADAQAALRRVIENYSSISRFILICNYLHKIIGPIYSRCSVFHFKPIETNSQIDRLK 184
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQ----SCARLKGGEGIVNEDVLEVTGV 262
YIC QE + D K L T+ S GDMR++IT LQ S A L I + V+G
Sbjct: 185 YICNQEGITFDPKFLTTI---SSGDMRKSITILQVILGSTACLYN--EITENAIYSVSGK 239
Query: 263 IPKPWIEKLLKV--DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
PK +E + +V +E + ++ + + + +F Q + V+ + S+ D +K+
Sbjct: 240 PPKRVVESIFEVCRRPEGDVESVCKQIVHDGWDISSIFQQICEYVVESDSIGDIEKS 296
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 17/186 (9%)
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDK------QKALFKA 321
IE + F ++ Y+ +I YS +F H + +S D+ Q+ +
Sbjct: 139 IENYSSISRFILICNYLHKIIGPIYSRCSVF---HFKPIETNSQIDRLKYICNQEGITFD 195
Query: 322 LETLVETSGGDMRRAITCLQ----SCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV-- 375
+ L S GDMR++IT LQ S A L I + V+G P +E + +V
Sbjct: 196 PKFLTTISSGDMRKSITILQVILGSTACLYNE--ITENAIYSVSGKPPKRVVESIFEVCR 253
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
+E + ++ + + + +F Q + V+ + S+ D +K+ I +LA + L G
Sbjct: 254 RPEGDVESVCKQIVHDGWDISSIFQQICEYVVESDSIGDIEKSKISLELANRDFALLQGG 313
Query: 436 SEYIQI 441
S+Y Q+
Sbjct: 314 SQYFQL 319
>gi|392867577|gb|EAS29182.2| DNA replication factor C subunit Rfc2 [Coccidioides immitis RS]
Length = 322
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 123/284 (43%), Positives = 172/284 (60%), Gaps = 36/284 (12%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTAS 126
LFYGPPGTGKTST++A LFG +YR RILELNASD+RGI ++R+K+K FA+ Q +
Sbjct: 1 MLFYGPPGTGKTSTILALAKSLFGPKLYRSRILELNASDERGINIVREKIKDFARIQLSH 60
Query: 127 GFNQDGK-----PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCII 181
D + PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II
Sbjct: 61 PPAHDSEYRKQYPCPPFKIIILDEADSMTQDAQSALRRTMERFSRITRFCLVCNYVTRII 120
Query: 182 QPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
PL SRCSKFRFK L + TRL+ I + E + D ++ L+ S GD+RRAIT +QS
Sbjct: 121 DPLASRCSKFRFKSLDGSAAGTRLEEIAKTEKLRLDNGVVDALIRCSEGDLRRAITYMQS 180
Query: 242 CARLKGG---------------------EGIVN-EDVLEVTGVIPKPWIEKLLKV----- 274
ARL G G++ + V E+ GV+P + +L+
Sbjct: 181 AARLVGSGLSGKSGKDESGDEVMTDADQSGVITVQTVEEIAGVVPDKVVNRLIDAMQPKK 240
Query: 275 --DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
++ + + + D++ + +SA Q+ Q + ++ S+ D QK
Sbjct: 241 GGSVYEGVARVVTDIVADGWSAGQMLSQMYQAIVFNESIPDIQK 284
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 29/152 (19%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGG---------------------EGIVN-EDVLE 359
++ L+ S GD+RRAIT +QS ARL G G++ + V E
Sbjct: 160 VDALIRCSEGDLRRAITYMQSAARLVGSGLSGKSGKDESGDEVMTDADQSGVITVQTVEE 219
Query: 360 VTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL 412
+ GV+P+ + +L+ ++ + + + D++ + +SA Q+ Q + ++ S+
Sbjct: 220 IAGVVPDKVVNRLIDAMQPKKGGSVYEGVARVVTDIVADGWSAGQMLSQMYQAIVFNESI 279
Query: 413 SDKQKALILEKLAECNARLQDGASEYIQILDL 444
D QK I+ +E + RL DGA E + ILDL
Sbjct: 280 PDIQKNDIVLVFSEYDKRLIDGADEQLSILDL 311
>gi|213514520|ref|NP_001135046.1| replication factor C subunit 5 [Salmo salar]
gi|209738250|gb|ACI69994.1| Replication factor C subunit 5 [Salmo salar]
Length = 335
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 165/236 (69%), Gaps = 12/236 (5%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
++RN +PWVEKYRP+T+DD+I ++++S ++K +S LPH LFYGPPGTGKTST++A+
Sbjct: 10 QSRN--LPWVEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGKTSTVLAS 67
Query: 87 CHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145
QL+ + + +LELNASDDRGI V+R + +FA T + F + FK+VILDE
Sbjct: 68 AKQLYKEKEFNAMVLELNASDDRGIDVVRGPILSFAS-TRTIFKKG------FKLVILDE 120
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL+++ M+ RL
Sbjct: 121 ADAMTRDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQDQMIPRL 180
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
+++ +QES+ ++ +V S GDMRR++ LQS + G + ++V TG
Sbjct: 181 EFVIQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYG--KVTEDNVYTCTG 234
>gi|327311922|ref|YP_004338819.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
gi|326948401|gb|AEA13507.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
Length = 322
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 106/206 (51%), Positives = 144/206 (69%), Gaps = 7/206 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ ++V++ +EV + LK+ + ++PH LFYGPPGTGKT+ + +L+GD
Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLKEFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGDA 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME +TRF L+ NYVS II+P+ SRC+ FRF PL + +L+RL++I EQE V
Sbjct: 119 QALRRIMEMYANTTRFILLANYVSGIIEPIQSRCAIFRFSPLPKEAVLSRLRFIAEQEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQ 240
+AL+ + + + GDMRRAIT LQ
Sbjct: 179 KISQEALDAIFDFTQGDMRRAITALQ 204
>gi|119719185|ref|YP_919680.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
gi|150415673|sp|A1RWU7.1|RFCS_THEPD RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|119524305|gb|ABL77677.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
Length = 325
Score = 230 bits (587), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 147/209 (70%), Gaps = 7/209 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+++D++++Q+E+V LK+ + ++PH LF GPPGTGKT+ +A H L+G+
Sbjct: 6 WVEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDLYGES 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R+ LELNASD+RGI VIR ++K +A+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRDNTLELNASDERGIDVIRSRIKDYARTLPIG-------DVPFKLVILDEADNMTGDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRRTME +++TRF LI NY S II+P+ SRC+ FRF+PL + RL++I +QE +
Sbjct: 119 QALRRTMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDAFQRLRWIAQQEGI 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCA 243
D ALE + E S GD+R+AI LQ+ +
Sbjct: 179 TVDDGALEAIWEESQGDLRKAINTLQAAS 207
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 12/143 (8%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP----NPWIEKLLKVD 376
ALE + E S GD+R+AI LQ+ + + + E V G + IE LK +
Sbjct: 184 ALEAIWEESQGDLRKAINTLQAASAI--SRNVTEEVVYAALGRVKPKEVREMIESALKGN 241
Query: 377 SFQVLEKYIEDLILEAY--SATQLFDQFHDIVMSASS--LSDKQKALILEKLAECNARLQ 432
+ +K L+L Y S + H V+S S L D A +L + E N R+
Sbjct: 242 LLEARDKL--RLLLYNYGLSGVDIIRFIHREVLSQKSVRLDDATLAELLVLVGETNYRIV 299
Query: 433 DGASEYIQILDLGSIVIKANKTA 455
+G+ + IQ++ L S + +K A
Sbjct: 300 EGSDDEIQLMALLSKLALVSKKA 322
>gi|325969252|ref|YP_004245444.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
gi|323708455|gb|ADY01942.1| AAA ATPase central domain protein [Vulcanisaeta moutnovskia 768-28]
Length = 327
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 111/223 (49%), Positives = 152/223 (68%), Gaps = 10/223 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP IDD+I+Q V + +K+ L+ ++PH LF+GPPGTGKT+ +A +L+GD
Sbjct: 8 WVEKYRPSRIDDIIDQDHVKARVKEMLANGNIPHLLFFGPPGTGKTTMALAIARELYGDA 67
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE +LELNASD+RGI +IR+KVK FA+ + PF+++ILDEAD+MT AQ
Sbjct: 68 WRENVLELNASDERGIAMIREKVKEFAKTIPT-------VKAPFRLIILDEADNMTPDAQ 120
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME T S RF L+ NY S II+P+ SRCS FRF PL ++ +L RL+ I +E V
Sbjct: 121 QALRRIMEMYTSSVRFILLANYSSGIIEPIQSRCSLFRFSPLPKDAVLGRLRDIASREGV 180
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
+ALE + + S GDMR+AI LQ+ A L G+V+E+ +
Sbjct: 181 KVTDEALEAIWDISQGDMRKAINTLQAAASLG---GVVDEEAV 220
>gi|110590957|pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
gi|110590958|pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
gi|110590959|pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
gi|110590960|pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/227 (50%), Positives = 150/227 (66%), Gaps = 9/227 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+T+D+V+ Q EV+ LK + ++PH LF GPPGTGKT+T IA LFG+
Sbjct: 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN 66
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R+ +E+NASD+RGI V+R K+K FA+ G PFKI+ LDEAD++T AQ
Sbjct: 67 WRDNFIEMNASDERGIDVVRHKIKEFARTAPIG-------GAPFKIIFLDEADALTADAQ 119
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTME +KS RF L CNYVS II+P+ SRC+ FRFKP+ + M RL ICE+E V
Sbjct: 120 AALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV 179
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
LE L+ SGGD R+AI LQ A + GE + + + ++T
Sbjct: 180 KITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQITA 224
>gi|384248832|gb|EIE22315.1| DNA replication factor C complex subunit 5 [Coccomyxa
subellipsoidea C-169]
Length = 334
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 121/277 (43%), Positives = 167/277 (60%), Gaps = 13/277 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPKT+DDV +E++ +K+ + PH LFYGPPGTGKTST++A Q++G
Sbjct: 15 PWVEKYRPKTLDDVAAHKEIIDTIKRLVKEDRFPHVLFYGPPGTGKTSTILAVARQMYGA 74
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
R +LELNASDDRGI ++R+++ FA N+ FK+VILDE D+MT A
Sbjct: 75 SLRSMVLELNASDDRGIGIVREQIVDFASTKTMFSNK-------FKLVILDECDAMTKDA 127
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
QAALRR +EK T++TRFCLICNYV+ II L SRC++FRF PLA++ + +RLQ++ + E
Sbjct: 128 QAALRRVIEKYTRNTRFCLICNYVNKIIPALQSRCTRFRFPPLADSYVRSRLQFVIDSER 187
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG-VIPK---PWIE 269
V L+ +V GDMRR + LQ A + + E V + TG +PK ++
Sbjct: 188 VNMGDGGLDAVVTLGAGDMRRTLNILQ--ATHMSADVVSEEAVYQCTGNPLPKDIEAIVQ 245
Query: 270 KLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
L D V K + I + + T + Q H V
Sbjct: 246 ALFNEDFVDVFAKVQDMQINKGLALTDIVQQLHPWVF 282
>gi|388858041|emb|CCF48278.1| probable RFC3-DNA replication factor C, 40 kDa subunit [Ustilago
hordei]
Length = 343
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 114/242 (47%), Positives = 159/242 (65%), Gaps = 9/242 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T++D++ +++ S ++ + LPH LFYGPPGTGKTST++A ++FG
Sbjct: 24 LPWVEKYRPATLEDLVSHKDITSTIQNFIDRNRLPHLLFYGPPGTGKTSTILAMARKIFG 83
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+R +LELNASDDRGI+V+R+++K FA T S F+ G FK+++LDEAD+MT A
Sbjct: 84 PQFRNSVLELNASDDRGIEVVREQIKGFA-STKSVFSSKGG----FKLIVLDEADAMTQA 138
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +E+ TK+ RFC+ICNYV+ II + SRC++FRF PL + + RL ++ E E
Sbjct: 139 AQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLQLDQVEDRLNHVIENE 198
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW-IEKL 271
E L++ S GDMRRA+ LQ+C + I V TG P P IE +
Sbjct: 199 GCKITQDGKEALLKLSRGDMRRALNVLQACH--AASDHIDETAVYNCTGN-PHPSDIEAM 255
Query: 272 LK 273
LK
Sbjct: 256 LK 257
>gi|428673231|gb|EKX74144.1| replication factor C subunit 2, putative [Babesia equi]
Length = 228
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/216 (49%), Positives = 152/216 (70%), Gaps = 4/216 (1%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K +PWVEKYRPK + DV+ Q + VS++++ + ++PH +F+GPPGTGKTS +A Q+
Sbjct: 5 KDIPWVEKYRPKKLSDVVFQTQAVSIMEQIIETFNMPHMIFHGPPGTGKTSAALAMARQI 64
Query: 91 FG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG--FNQDGKPC-PPFKIVILDEA 146
+G + RER+LELNASD+RGI V+RD++KT+ + S N + K P +K++ILDEA
Sbjct: 65 YGAEGMRERVLELNASDERGIDVVRDRIKTYTRINISNNKINPETKRVMPNYKMIILDEA 124
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D +T AQAALRR +E + +RF LICNY+ II P+ SRCS F FKP+ +N+ + RL+
Sbjct: 125 DMITSDAQAALRRVIENYSNISRFILICNYLHKIIGPIYSRCSAFHFKPIEQNSQVDRLE 184
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
YIC+QE + AL+ L + S GDMR++IT LQ C
Sbjct: 185 YICKQEGIAYTTSALQFLTKISQGDMRKSITILQVC 220
>gi|71745690|ref|XP_827475.1| replication factor C subunit 3 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831640|gb|EAN77145.1| replication factor C, subunit 3, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261331678|emb|CBH14672.1| replication factor C, subunit 3, putative [Trypanosoma brucei
gambiense DAL972]
Length = 357
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 121/298 (40%), Positives = 179/298 (60%), Gaps = 11/298 (3%)
Query: 17 SSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPG 76
+ + ++S +N +PWVEKYRP T+DDV+ +E++ ++ ++ +PH LFYGPPG
Sbjct: 2 TGEGTLSNGQPAKNSTLPWVEKYRPTTLDDVVAHEEILDTTRRLMNSGSMPHLLFYGPPG 61
Query: 77 TGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF--NQDGK 133
TGKT+T+ A H LFG + R +LE+NASDDRGI V+R +V+ FA ++ F N +
Sbjct: 62 TGKTTTIKACAHHLFGKERLRANVLEMNASDDRGIDVVRQQVREFASTSSIFFQNNPGNQ 121
Query: 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
FK+VILDEAD M+ AQAALRR +EK TK+ RFC++CN+++ II L SRC++FRF
Sbjct: 122 TVTNFKLVILDEADQMSSDAQAALRRIIEKFTKNVRFCILCNHINKIIPALQSRCTRFRF 181
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253
P+ ++ ML RL+ I +E V + L + S GDMRR + +Q+ + + GE I
Sbjct: 182 SPVKKSAMLPRLKLIAREEGVPFTDEGLISAFRLSDGDMRRCLNTMQASS-MSAGE-ITE 239
Query: 254 EDVLEVTGVIPKP-----WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
E V TG P P + +L + EK + ++ + S L + H IVM
Sbjct: 240 ESVYRTTGN-PTPTDVRVMVGDMLSHNYATSWEKVQQLVVDKGVSTADLVREVHLIVM 296
>gi|281209635|gb|EFA83803.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 347
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/278 (43%), Positives = 172/278 (61%), Gaps = 17/278 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK + +I +++ + K ++ LPH LFYGPPGTGKTST+ A +L+G
Sbjct: 20 LPWVEKYRPKDLSGLIAHEDITDTVSKLIAKNSLPHLLFYGPPGTGKTSTIQAIARKLYG 79
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ Y +LELNASDDRGI V+R+++KTFA N P+K++ILDEADSMT+
Sbjct: 80 ESYSRMVLELNASDDRGIDVVREQIKTFASSMFMFSNY------PYKLIILDEADSMTNP 133
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK T++TRFC+ICNYVS I+ L SRC++FRF PL + + R++ I E E
Sbjct: 134 AQTALRRVIEKYTRTTRFCMICNYVSKILPALQSRCTRFRFSPLPRSAITKRMKEIIECE 193
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCA-RLKGGEGIVNEDVLEVTGVIPKPWIEKL 271
S+ + AL +++ S GDMR+ + LQS + + G I + + TG +P +
Sbjct: 194 SLKVNDDALNSIITLSEGDMRKCLNILQSASMSIDVGTTIDKDTIYRCTG---QPLPTDI 250
Query: 272 LKVDSFQVLEKYIEDL--ILE-----AYSATQLFDQFH 302
K+ + + + YIE L ILE S T + + H
Sbjct: 251 KKILMWSLNQSYIEALNNILELKKEKGLSLTDIIKEIH 288
Score = 38.5 bits (88), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 14/136 (10%)
Query: 321 ALETLVETSGGDMRRAITCLQSCA-RLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQ 379
AL +++ S GDMR+ + LQS + + G I + + TG P + K+ +
Sbjct: 201 ALNSIITLSEGDMRKCLNILQSASMSIDVGTTIDKDTIYRCTG---QPLPTDIKKILMWS 257
Query: 380 VLEKYIEDL--ILE-----AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQ 432
+ + YIE L ILE S T + + H + + ++ ++++L++ L
Sbjct: 258 LNQSYIEALNNILELKKEKGLSLTDIIKEIHFMTLKVPNIGGPALWNLVKELSDIEYNLS 317
Query: 433 DGASEYIQILDLGSIV 448
GASE +Q LGS++
Sbjct: 318 FGASEKLQ---LGSML 330
>gi|237843503|ref|XP_002371049.1| activator 1 36 kDa, putative [Toxoplasma gondii ME49]
gi|211968713|gb|EEB03909.1| activator 1 36 kDa, putative [Toxoplasma gondii ME49]
gi|221484795|gb|EEE23089.1| activator 1 36 kDa, putative [Toxoplasma gondii GT1]
gi|221504971|gb|EEE30636.1| activator 1 36 kDa, putative [Toxoplasma gondii VEG]
Length = 398
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/330 (36%), Positives = 184/330 (55%), Gaps = 35/330 (10%)
Query: 9 KLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH 68
LGK AP + + + ++ R +PWVEKYRP+ + DV+ +++ ++ + LPH
Sbjct: 14 NLGK-APEKASSQLPSAHADRA--LPWVEKYRPERLSDVLAHDDIIRTIRNYVHKGQLPH 70
Query: 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF 128
LF+GPPGTGKTST++A + +G R +LELNASDDRGI +R+++KTFA+ +++ F
Sbjct: 71 LLFHGPPGTGKTSTILAVAKEFYGSAVRTHVLELNASDDRGINTVREQIKTFAETSSTSF 130
Query: 129 NQD--------------------------GKPCPPFKIVILDEADSMTHAAQAALRRTME 162
Q+ G+ P K++ILDEAD MT+AAQ ALRR ME
Sbjct: 131 QQNRLIFGKSAVPATEAAEATSSHGQEKKGQGGPSLKLIILDEADQMTNAAQNALRRIME 190
Query: 163 KETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALE 222
++ RFCLICN+V+ I + SRC+ FRF P++ ++ T+ I + E + L+
Sbjct: 191 AYARNVRFCLICNFVNKITPAIQSRCTGFRFTPVSSASLKTKAAQIVQDEKMKLSDDGLD 250
Query: 223 TLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP-----WIEKLLKVDSF 277
LV+ + GDMRR + C+Q+ GE VN D++ T +P P E+LL D F
Sbjct: 251 ALVKIARGDMRRLLNCMQASHLAHPGEE-VNADIVHRTLGLPPPSEVTTMFERLLVADFF 309
Query: 278 QVLEKYIEDLILEAYSATQLFDQFHDIVML 307
++ E + + Y+ FH+ ++L
Sbjct: 310 ACCKELDELVTAKGYAMRDWVIAFHERILL 339
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 13/137 (9%)
Query: 313 DKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP----- 367
+K K L+ LV+ + GDMRR + C+Q+ GE VN D++ T +P P
Sbjct: 240 EKMKLSDDGLDALVKIARGDMRRLLNCMQASHLAHPGEE-VNADIVHRTLGLPPPSEVTT 298
Query: 368 WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALIL---EKL 424
E+LL D F ++ E + + Y+ FH+ ++ L D +++ +L
Sbjct: 299 MFERLLVADFFACCKELDELVTAKGYAMRDWVIAFHERIL----LVDWPANVLITFVSRL 354
Query: 425 AECNARLQDGASEYIQI 441
A+ RL GASE +Q+
Sbjct: 355 ADLEERLATGASEAVQM 371
>gi|291002133|ref|XP_002683633.1| predicted protein [Naegleria gruberi]
gi|284097262|gb|EFC50889.1| predicted protein [Naegleria gruberi]
Length = 351
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 104/208 (50%), Positives = 146/208 (70%), Gaps = 1/208 (0%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP + D++ E++S +++ + G LPH L YGPPGTGKTST++A +LFG+
Sbjct: 14 WIEKYRPHELTDLLSHTEIISTIQRLIDGGKLPHLLLYGPPGTGKTSTVLAIAKKLFGNR 73
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP-FKIVILDEADSMTHAA 153
+ +LELNASDDRGI VIR+++K FA F K P K++ILDEAD MT A
Sbjct: 74 LTQNVLELNASDDRGIDVIRNEIKDFASTKGLKFFTAQKDTTPDIKLIILDEADQMTKDA 133
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
QAALRRT+EK +K+ RFCLICNYV+ II L SRC++FRF PL ++ +++RL+ IC++E+
Sbjct: 134 QAALRRTIEKYSKNVRFCLICNYVNKIIPALQSRCTRFRFSPLKKHEVVSRLEEICKEEN 193
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQS 241
V+ + L+ + S GDMR+ + LQS
Sbjct: 194 VIYNQVGLDAIYRLSNGDMRKCVNILQS 221
>gi|145498359|ref|XP_001435167.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402297|emb|CAK67770.1| unnamed protein product [Paramecium tetraurelia]
Length = 340
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 102/212 (48%), Positives = 149/212 (70%), Gaps = 2/212 (0%)
Query: 26 GKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIA 85
G +NK +PW+EKYRP T+D+VI +E+V+ +KK LP+ L YGPPGTGKTST+IA
Sbjct: 8 GNKKNKNIPWIEKYRPSTLDEVISHEEIVATIKKFNEKNRLPNLLLYGPPGTGKTSTIIA 67
Query: 86 ACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145
Q++ + Y + +LELNASD+RGI +R+ +K FA+ + F +D K+VILDE
Sbjct: 68 LAKQIYQNKYNQMVLELNASDERGINTVRETIKGFAESQSFTFTKDKN--TSIKLVILDE 125
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD+MT AAQ ALRR +EK K+TRFC ICN++S II + SRC++F+FK ++ + +R+
Sbjct: 126 ADAMTAAAQFALRRIIEKYAKTTRFCFICNHISQIIPAIQSRCTRFKFKQISLDVASSRI 185
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAIT 237
+YICE ES+ + +A++++ E GDMRR +
Sbjct: 186 KYICENESIPLNEQAIKSVFELCSGDMRRVVN 217
>gi|147902441|ref|NP_001085526.1| MGC80325 protein [Xenopus laevis]
gi|49117945|gb|AAH72889.1| MGC80325 protein [Xenopus laevis]
Length = 335
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/218 (51%), Positives = 155/218 (71%), Gaps = 10/218 (4%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
SG++RN +PWVEKYRP+T+D++I Q+++S +++ +S LPH LFYGPPGTGKTST++
Sbjct: 9 SGQSRN--LPWVEKYRPQTLDELISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTIL 66
Query: 85 AACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A QL+ D + +LELNASDDRGI ++R V +FA T + F + FK+VIL
Sbjct: 67 ACAKQLYKDREFNSMVLELNASDDRGIDIVRGPVLSFAS-TRTIFKKG------FKLVIL 119
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL+ M+
Sbjct: 120 DEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSSEMMIP 179
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
RL+++ ++E V ++ LV S GDMRR++ LQS
Sbjct: 180 RLEHVVKEEHVDISPDGMKALVTLSNGDMRRSLNILQS 217
>gi|341896367|gb|EGT52302.1| hypothetical protein CAEBREN_14732 [Caenorhabditis brenneri]
Length = 353
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 111/215 (51%), Positives = 152/215 (70%), Gaps = 5/215 (2%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
+++ + W EKYRPKT+DD+ Q EVV++LK L G DLPH LFYGPPGTGKTST +A CH
Sbjct: 30 KSRVLTWTEKYRPKTLDDIAHQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSTALAFCH 89
Query: 89 QLF-GDMYRERILELNASDDRGIQVIRDKVKTFAQQT-ASGFNQDGKPCPPFKIVILDEA 146
QLF ++ +R+L+LNASD+RGI V+R KV+ F++ + SG +D KI+ILDE
Sbjct: 90 QLFPKSIFHDRVLDLNASDERGISVVRQKVQAFSKTSLGSGGKED---VLKLKIIILDEV 146
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ+A+RR +E +K+TRF LICNYVS +I P+ SRC+KFRFK L + RL+
Sbjct: 147 DAMTREAQSAMRRVIEDYSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEVQVQRLR 206
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
IC+ E + L+ ++E + GD+RRA+ LQS
Sbjct: 207 TICDAEGAPMTDEELKQVMEYAEGDLRRAVCTLQS 241
>gi|388583685|gb|EIM23986.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 335
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 154/234 (65%), Gaps = 8/234 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DDV+ E++ + + + LPH LFYGPPGTGKTST++A +++G
Sbjct: 14 LPWVEKYRPNELDDVVSHTEIIQTINQFIQKQRLPHLLFYGPPGTGKTSTILAIAKKIYG 73
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ +LELNASDDRGI V+RD++K+FAQ T + F+ DG FK++ILDEAD MT
Sbjct: 74 GNWKRNVLELNASDDRGIDVVRDQIKSFAQ-TRTLFS-DG-----FKLIILDEADLMTQQ 126
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +E T +TRFC+ICNYV+ I + SRC++FRF PL + RL + E E
Sbjct: 127 AQGALRRIIEHYTPTTRFCIICNYVNKITPAIMSRCTRFRFSPLPYAHLDKRLVEVIENE 186
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP 266
+V D A + L+ + GDMRRA+ LQ+C E I +DV VT P+P
Sbjct: 187 AVQIDDDAKKALLNLTKGDMRRALNILQACHTACMPERISIKDVYNVTAA-PQP 239
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 56/130 (43%), Gaps = 15/130 (11%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP----WIEKLLKVD 376
A + L+ + GDMRRA+ LQ+C E I +DV VT P P +I L D
Sbjct: 194 AKKALLNLTKGDMRRALNILQACHTACMPERISIKDVYNVTAA-PQPEAIEYIVNTLLKD 252
Query: 377 SFQVLEKYIEDLILEAYSATQ-----LFDQFHDIVMSASSLSDKQKALILEKLAECNARL 431
I + + A Q ++D I ++ K ILE LAE RL
Sbjct: 253 EISTCYSKIHQVKRQNGLALQDILTGVYDYIQTIEFPTAT-----KVAILELLAEVEHRL 307
Query: 432 QDGASEYIQI 441
G+SE IQ+
Sbjct: 308 SKGSSETIQL 317
>gi|229582086|ref|YP_002840485.1| replication factor C small subunit [Sulfolobus islandicus
Y.N.15.51]
gi|228012802|gb|ACP48563.1| Replication factor C [Sulfolobus islandicus Y.N.15.51]
Length = 330
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 107/211 (50%), Positives = 144/211 (68%), Gaps = 7/211 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+ W EKYRP+T+DD++ Q+E++ LKK + ++PH LF GP GTGKT+ +A H L+G
Sbjct: 8 ILWAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPSGTGKTTAALALVHDLYG 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D Y E LELNASD+RGI VIR+KVK FA+ PFK+V+LDEAD+MT
Sbjct: 68 DNYVEYFLELNASDERGIDVIRNKVKEFARTVIPS-------NVPFKVVLLDEADNMTAD 120
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME T++TRF L CNY+S II+P+ SR + FRF PL + ++ RL YI + E
Sbjct: 121 AQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNE 180
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCA 243
D KALET+ + + GDMR++I LQ+ +
Sbjct: 181 KAEYDQKALETIYDITMGDMRKSINILQAAS 211
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 15/183 (8%)
Query: 283 YIEDLILEAYSATQLFDQF----HDIVMLASSLSDKQKALF--KALETLVETSGGDMRRA 336
Y+ +I S T LF + D+V ++ +KA + KALET+ + + GDMR++
Sbjct: 144 YLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNEKAEYDQKALETIYDITMGDMRKS 203
Query: 337 ITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSF-QVLEKYIEDLILEA 392
I LQ+ + I E V +V G+ + +++ + F Q EK L+
Sbjct: 204 INILQAAS---AYGKISVEAVFKVLGLAQPKEVREMISLALQGKFTQAREKLRTLLVTYG 260
Query: 393 YSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILD-LGSIVIK 450
S + Q H +I S +S++ + L+L+ + E R+ +GA + IQ+ L + I
Sbjct: 261 LSGEDIIKQIHREITSSELQISEELRVLLLDYIGETEFRIIEGADDEIQLSALLAKMAIY 320
Query: 451 ANK 453
NK
Sbjct: 321 GNK 323
>gi|402590253|gb|EJW84184.1| Rfc4 protein [Wuchereria bancrofti]
Length = 286
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 115/257 (44%), Positives = 168/257 (65%), Gaps = 7/257 (2%)
Query: 66 LPHFLFYGPPGTGKTSTMIAACHQLFGDM--YRERILELNASDDRGIQVIRDKVKTFAQQ 123
LP+ LFYGPPGTGKTS IA C QLF + YR+R++E+NASD+RGI ++R+K+K FA++
Sbjct: 12 LPNLLFYGPPGTGKTSAAIALCRQLFRNTVTYRDRVMEMNASDERGINIVRNKIKEFARR 71
Query: 124 TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183
S DG P K++ILDEAD+MT AQAALRRTME+E+++TRF LICNY++ II P
Sbjct: 72 AVSSHLPDGSPVVGLKVIILDEADAMTTPAQAALRRTMERESRTTRFFLICNYITRIIDP 131
Query: 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
LTSRC+KFRFK ++ + RL++IC+ E++ D A+ L+E GDMR+++T LQ+ +
Sbjct: 132 LTSRCAKFRFKSISSESQEKRLEWICQNENIEFDPLAISELIELCDGDMRKSVTALQTIS 191
Query: 244 RLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQ 300
+ ++ DV + G +P +++ + + + L IE++ E Y QL Q
Sbjct: 192 --SCHKKLIPTDVRQFLGAVPDDVVQQFVASCRSLNHNQLYACIENIRREGYGVYQLLKQ 249
Query: 301 FHDIVMLASSLSDKQKA 317
F I + L+D KA
Sbjct: 250 FFYICLRLEDLTDLNKA 266
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDS 377
A+ L+E GDMR+++T LQ+ + + ++ DV + G +P+ +++ + + +
Sbjct: 168 AISELIELCDGDMRKSVTALQTIS--SCHKKLIPTDVRQFLGAVPDDVVQQFVASCRSLN 225
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 425
L IE++ E Y QL QF I + L+D KA I EK+
Sbjct: 226 HNQLYACIENIRREGYGVYQLLKQFFYICLRLEDLTDLNKATICEKIG 273
>gi|325968175|ref|YP_004244367.1| replication factor C small subunit [Vulcanisaeta moutnovskia
768-28]
gi|323707378|gb|ADY00865.1| replication factor C small subunit [Vulcanisaeta moutnovskia
768-28]
Length = 338
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 108/208 (51%), Positives = 141/208 (67%), Gaps = 7/208 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP IDD+I+Q+EV +K+ L ++PH LFYGPPGTGKT+ +A +L+GD
Sbjct: 8 WVEKYRPSRIDDIIDQEEVKERVKQLLKTGNMPHMLFYGPPGTGKTTMALAIARELYGDA 67
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE +LELNASD+RGI IR++VK FA+ G P+K++ILDEAD+MT AQ
Sbjct: 68 WRENVLELNASDERGITTIRERVKEFARTAPMG-------KAPYKLIILDEADNMTSDAQ 120
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME TRF LI NYVS II P+ SRC+ FRF PL ++ +L RL+ I +E V
Sbjct: 121 QALRRMMEMYANVTRFILIANYVSRIIDPIQSRCAMFRFSPLPKDAVLGRLRDIASREGV 180
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSC 242
+ALE + + S GDMR+AI LQ+
Sbjct: 181 KVTDEALEAIWDISQGDMRKAINTLQAA 208
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---- 375
+ALE + + S GDMR+AI LQ+ I E V + G I I L+ +
Sbjct: 185 EALEAIWDISQGDMRKAINTLQAAT--ATAREITPEVVYKTVGYIEPKDIVDLVNIALNG 242
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS-ASSLSDKQKALILEKLAECNARLQDG 434
D + +K + S T++ +MS A ++ D+ K I E A+ + RL +G
Sbjct: 243 DFIRARDKLRTLMYEHGVSGTEILRVIQRQIMSGAINVPDEAKVEIAETAADIDYRLTEG 302
Query: 435 ASEYIQI 441
+ E IQ+
Sbjct: 303 SDEEIQL 309
>gi|70606693|ref|YP_255563.1| replication factor C small subunit [Sulfolobus acidocaldarius DSM
639]
gi|449066916|ref|YP_007433998.1| replication factor C small subunit [Sulfolobus acidocaldarius N8]
gi|449069188|ref|YP_007436269.1| replication factor C small subunit [Sulfolobus acidocaldarius
Ron12/I]
gi|73914011|sp|Q4JAB0.1|RFCS_SULAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|68567341|gb|AAY80270.1| replication factor C [Sulfolobus acidocaldarius DSM 639]
gi|449035424|gb|AGE70850.1| replication factor C small subunit [Sulfolobus acidocaldarius N8]
gi|449037696|gb|AGE73121.1| replication factor C small subunit [Sulfolobus acidocaldarius
Ron12/I]
Length = 325
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 120/272 (44%), Positives = 167/272 (61%), Gaps = 14/272 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPK++D+++ Q+E+V LKK + ++PH LF GPPGTGKT+ +A L+G+
Sbjct: 7 WAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYGNN 66
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
YR+ LELNASD+RGI VIR+KVK FA+ AS PFK+++LDEAD+MT AQ
Sbjct: 67 YRQYFLELNASDERGIDVIRNKVKEFARTVASN-------NVPFKVILLDEADNMTADAQ 119
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRRTME T++TRF L CNY+S II+P+ SR + FRF PL + ++ RL I + E V
Sbjct: 120 QALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNEKV 179
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
D K +ET+ + + GDMR+AI +Q+ + I E V +V G+ I ++L +
Sbjct: 180 EFDPKGIETIFDITQGDMRKAINVIQAASAYG---KITVETVYKVLGLAQPKEIREMLHL 236
Query: 275 ----DSFQVLEKYIEDLILEAYSATQLFDQFH 302
Q +K E LI S + Q H
Sbjct: 237 ALSGKFLQARDKLRELLINYGLSGEDIIKQVH 268
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 14/170 (8%)
Query: 283 YIEDLILEAYSATQLFDQF----HDIVMLASSLSDKQKALF--KALETLVETSGGDMRRA 336
Y+ +I S T LF + D+V ++ +K F K +ET+ + + GDMR+A
Sbjct: 141 YLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNEKVEFDPKGIETIFDITQGDMRKA 200
Query: 337 ITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV----DSFQVLEKYIEDLILEA 392
I +Q+ + I E V +V G+ I ++L + Q +K E LI
Sbjct: 201 INVIQAASAYG---KITVETVYKVLGLAQPKEIREMLHLALSGKFLQARDKLRELLINYG 257
Query: 393 YSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
S + Q H ++ + S+ D K ++++ E R+ +GA + IQ+
Sbjct: 258 LSGEDIIKQVHKELTGNEISIPDDLKVILVDYAGEVEFRIMEGADDEIQL 307
>gi|409081372|gb|EKM81731.1| hypothetical protein AGABI1DRAFT_35783 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 344
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 108/228 (47%), Positives = 156/228 (68%), Gaps = 7/228 (3%)
Query: 15 PSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGP 74
PS+ K +G + +PWVEKYRP T+DDV+ +++ S +++ + LPH LFYGP
Sbjct: 8 PSNGKGKEVDTGTADAESLPWVEKYRPVTLDDVVSHKDITSTIERFIERNRLPHLLFYGP 67
Query: 75 PGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134
PGTGKTST++A +++G Y+++ILELNASDDRGI V+R+++K FA +T + F++
Sbjct: 68 PGTGKTSTILAVARRIYGTSYKKQILELNASDDRGIDVVREQIKQFA-ETRTLFSKG--- 123
Query: 135 CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
FK++ILDEAD MT AAQAALRR +E+ TK+ RFC+ICNYV+ I + SRC++FRF
Sbjct: 124 ---FKLIILDEADMMTQAAQAALRRVIEQFTKNVRFCIICNYVNKITPAIQSRCTRFRFS 180
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
PL + R+ + E E+V + L++ S GDMRRA+ LQ+C
Sbjct: 181 PLPMTEVEKRVDMVVEAENVPLTTEGKNALLKLSKGDMRRALNVLQAC 228
>gi|374325546|ref|YP_005083743.1| replication factor C small subunit [Pyrobaculum sp. 1860]
gi|356640812|gb|AET31491.1| replication factor C small subunit [Pyrobaculum sp. 1860]
Length = 319
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 140/209 (66%), Gaps = 7/209 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV + L+ + D+PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRGFVKSGDMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NY+S II+P+ SR FRF PL + + TRL+YI E E V
Sbjct: 119 QALRRIMEIYAQNTRFILLANYISGIIEPIQSRTVMFRFSPLPKEAVFTRLRYIAENEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCA 243
ALET+ E + GDMRRAI LQ A
Sbjct: 179 KISDDALETIYEFTQGDMRRAINALQIAA 207
>gi|342183622|emb|CCC93102.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 290
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 115/277 (41%), Positives = 171/277 (61%), Gaps = 11/277 (3%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
+N +PWVEKYRP T+ +V+ +E++ ++ + ++PH LFYGPPGTGKT+T+ A+ H
Sbjct: 14 KNCTLPWVEKYRPATLSEVVAHEEILETTQRLMDSGNMPHLLFYGPPGTGKTTTIKASAH 73
Query: 89 QLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCP--PFKIVILDE 145
L+G + R +LE+NASDDRGI V+R++++ FA ++ FN K FK+VILDE
Sbjct: 74 YLYGKERIRANVLEMNASDDRGIDVVRNQIREFASTSSVFFNSASKTSAMSSFKLVILDE 133
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD M+ AQAALRR +EK T++ RFC++CN+++ II L SRC++FRF P+ + ML RL
Sbjct: 134 ADQMSSDAQAALRRIIEKYTRNVRFCIVCNHINKIIPALQSRCTRFRFAPVKKAAMLPRL 193
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPK 265
+I ++ES+ L S GDMRR + LQ+ A + GE I E V TG P
Sbjct: 194 AFIAQEESIPFTNDGLVAAFRLSNGDMRRCLNTLQASA-MSTGE-ITEESVYRTTGN-PT 250
Query: 266 P-----WIEKLLKVDSFQVLEKYIEDLILEAYSATQL 297
P +E++L D + + + + S+T L
Sbjct: 251 PADVRGLVEEMLSSDYATSWNRVLRAVTEKGMSSTDL 287
>gi|402223757|gb|EJU03821.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 356
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 148/210 (70%), Gaps = 7/210 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV+ +++ S ++K + LPH LFYGPPGTGKTST++A +++G
Sbjct: 39 LPWVEKYRPATLDDVVSHKDITSTIEKFIEQNRLPHLLFYGPPGTGKTSTILAVARKIYG 98
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ YR++ILELNASDDRGI V+R+++K FA+ G FK+++LDEAD MT A
Sbjct: 99 NEYRKQILELNASDDRGIDVVREQIKNFAEMRT--LYSKG-----FKLIVLDEADMMTQA 151
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRR +E+ T++ RFC+ICNYV+ II + SRC++FRF PL + + R++ + E E
Sbjct: 152 AQSALRRVIEQYTRNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPQTEIEKRIKQVVEAE 211
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSC 242
V + L++ S GDMRRA+ LQ+C
Sbjct: 212 HVNLTEDGKQALLKLSKGDMRRALNILQAC 241
>gi|401403730|ref|XP_003881552.1| putative activator 1 36 kDa [Neospora caninum Liverpool]
gi|325115965|emb|CBZ51519.1| putative activator 1 36 kDa [Neospora caninum Liverpool]
Length = 403
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 186/339 (54%), Gaps = 41/339 (12%)
Query: 8 GKLGKDAPSSSKTSVSTSGKT-----RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLS 62
G D+P S++ S + K + +PWVEKYRP+ +DDV+ +++ ++ +
Sbjct: 6 GVTNSDSPRSAEASERPASKLPPHGLSERALPWVEKYRPERLDDVLAHDDIIRTIRHYVE 65
Query: 63 GADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQ 122
LPH LF+GPPGTGKTST++A + +G R +LELNASDDRGI +R+++KTFA+
Sbjct: 66 KGQLPHLLFHGPPGTGKTSTILAVAKEFYGSAVRTHVLELNASDDRGINTVREQIKTFAE 125
Query: 123 QTASGFNQD-----GKPCPP-------------------------FKIVILDEADSMTHA 152
+++ F+ GKP P K++ILDEAD MT+A
Sbjct: 126 TSSTSFHGQGRLMFGKPAAPTASAEKEEASSLAQSQEKRGGAGPSLKLIILDEADQMTNA 185
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR ME ++ RFCLICN+++ I + SRC+ FRF P++ ++ + I E+E
Sbjct: 186 AQNALRRIMEAYARNVRFCLICNFINKITPAIQSRCTGFRFTPVSSLSLKQKAAQIAEEE 245
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP-----W 267
++ L+ LV+ + GDMRR + C+Q+ GE +VN D++ T +P P
Sbjct: 246 TMKLSDDGLDALVKIARGDMRRLLNCMQASHLAHPGE-VVNADIVHRTLGLPPPSEVTAM 304
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
E+LL D F ++ E + + Y+ FH+ ++
Sbjct: 305 FERLLVADFFACCKELDELVNTKGYAMRDWVIAFHERIL 343
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 18/149 (12%)
Query: 309 SSLSDKQKALFKA-----------LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDV 357
SSLS KQKA A L+ LV+ + GDMRR + C+Q+ GE +VN D+
Sbjct: 230 SSLSLKQKAAQIAEEETMKLSDDGLDALVKIARGDMRRLLNCMQASHLAHPGE-VVNADI 288
Query: 358 LEVTGVIPNP-----WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL 412
+ T +P P E+LL D F ++ E + + Y+ FH+ ++
Sbjct: 289 VHRTLGLPPPSEVTAMFERLLVADFFACCKELDELVNTKGYAMRDWVIAFHERILRVDWP 348
Query: 413 SDKQKALILEKLAECNARLQDGASEYIQI 441
+ + +LA+ RL GASE +Q+
Sbjct: 349 VNVLITFV-SRLADLEERLATGASEAVQM 376
>gi|149720613|ref|XP_001490846.1| PREDICTED: replication factor C subunit 5 [Equus caballus]
Length = 340
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 120/249 (48%), Positives = 162/249 (65%), Gaps = 14/249 (5%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
AP +++ + K RN +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YG
Sbjct: 5 APEQQQSAAT--AKIRN--LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYG 60
Query: 74 PPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
PPGTGKTST++A QL+ D + +LELNASDDRGI ++R + +FA T + F +
Sbjct: 61 PPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFA-STRTIFKKG- 118
Query: 133 KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
FK+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FR
Sbjct: 119 -----FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFR 173
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
F PL M+ RLQ++ E+E V ++ LV S GDMRRA+ LQS G +
Sbjct: 174 FGPLTPELMVPRLQHVVEEEKVAISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVT 231
Query: 253 NEDVLEVTG 261
E V TG
Sbjct: 232 EETVYTCTG 240
>gi|167393611|ref|XP_001740649.1| replication factor C subunit [Entamoeba dispar SAW760]
gi|165895162|gb|EDR22913.1| replication factor C subunit, putative [Entamoeba dispar SAW760]
Length = 329
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 120/293 (40%), Positives = 187/293 (63%), Gaps = 11/293 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPKT+DDV Q+EV+ +LK L LP+ LF+GPPG+GKT++++A H+LF
Sbjct: 7 WSEKYRPKTLDDVQGQEEVIKLLKSSLDSG-LPNLLFFGPPGSGKTTSILAVAHELFQGY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++ER+LELNAS+ RGI+++R +K +A Q + + DG P +K++ILDE+D++T AQ
Sbjct: 66 FKERVLELNASNQRGIEMVRTTLKNYAMQDVTHY--DG--IPDYKLIILDESDALTPDAQ 121
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME TK+TRFCLICNY+S I+ P++SRC KFRF L + + RLQ ICE+E
Sbjct: 122 TALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGF 181
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
+A++ + S GD+R I LQ ++ + +D+ V GV+P I +++ +
Sbjct: 182 SVTNEAIQAVSILSEGDLRYGIGLLQKLSQ-GINHSVTPQDISNVAGVVPSKEITEIIHL 240
Query: 275 -DSFQVLEKYIEDLIL---EAYSATQLFDQFHDIVML-ASSLSDKQKALFKAL 322
+ V + Y++ + L + YSA + Q D+ + +L+++++ LF L
Sbjct: 241 CQNGSVNDLYLKAMSLVVEQNYSADSILSQLRDVYIEDCVNLTNQERCLFLQL 293
>gi|47221499|emb|CAG08161.1| unnamed protein product [Tetraodon nigroviridis]
Length = 335
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 161/238 (67%), Gaps = 11/238 (4%)
Query: 21 SVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKT 80
S +T + + +PWVEKYRP+ +DD+I ++++S +++ +S LPH LFYGPPGTGKT
Sbjct: 2 SATTKAPLQTRNLPWVEKYRPQKLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGKT 61
Query: 81 STMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFK 139
ST++A QL+ D + +LELNASDDRGI V+R + +FA T + F + FK
Sbjct: 62 STILACARQLYRDKEFNSMVLELNASDDRGIDVVRGPILSFAS-TRTIFKKG------FK 114
Query: 140 IVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAEN 199
+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL+ +
Sbjct: 115 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPD 174
Query: 200 TMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
M+ RL+++ +QES+ ++ +V S GDMRR++ LQS + G V ED +
Sbjct: 175 QMVPRLEHVIQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSM---AYGKVTEDTV 229
>gi|440301872|gb|ELP94258.1| replication factor C subunit, putative [Entamoeba invadens IP1]
Length = 337
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 125/309 (40%), Positives = 192/309 (62%), Gaps = 17/309 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPK +D+V Q+EV+ +LK L+ LP+ LF+GPPG+GKT++++A +LFG+
Sbjct: 18 WSEKYRPKKLDEVKGQEEVIKLLKSSLTSG-LPNLLFFGPPGSGKTTSILALSRELFGNC 76
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+++R+LELNAS++RGI +IR +K +A Q S +QDG P +K++ILDE+D++T AQ
Sbjct: 77 FKDRVLELNASNERGIDMIRTTLKNYAMQDVS--HQDG--IPDYKLIILDESDALTPDAQ 132
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME T++TRFCLICNY+S I+ P++SRC KFRF L + T+ L ICE+E
Sbjct: 133 TALRRMMEDFTRNTRFCLICNYISRILPPISSRCIKFRFNALPQETVFEHLTSICEKEKF 192
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGG--EGIVNEDVLEVTGVIPKPWIEKLL 272
+A++ + + S GDMR AI LQ +L G + +D+ V GV+P I +++
Sbjct: 193 DVTPEAIKAVGKLSEGDMRYAIGLLQ---KLSQGVRHSVTPQDISNVAGVVPNLEISQII 249
Query: 273 KV----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVML-ASSLSDKQKALFKALETLVE 327
+ F + K + ++ E Y+A + Q DI + L++ Q+ F L + +
Sbjct: 250 LICKEKTVFDIYLKVLHLVVEENYAADSILSQIRDIFTQDTNGLTETQRCNF--LLEIAD 307
Query: 328 TSGGDMRRA 336
T + RA
Sbjct: 308 TDAALIDRA 316
Score = 47.0 bits (110), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 10/138 (7%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGG--EGIVNEDVLEVTGVIPNPWIEKLLKV-- 375
+A++ + + S GDMR AI LQ +L G + +D+ V GV+PN I +++ +
Sbjct: 197 EAIKAVGKLSEGDMRYAIGLLQ---KLSQGVRHSVTPQDISNVAGVVPNLEISQIILICK 253
Query: 376 --DSFQVLEKYIEDLILEAYSATQLFDQFHDI-VMSASSLSDKQKALILEKLAECNARLQ 432
F + K + ++ E Y+A + Q DI + L++ Q+ L ++A+ +A L
Sbjct: 254 EKTVFDIYLKVLHLVVEENYAADSILSQIRDIFTQDTNGLTETQRCNFLLEIADTDAALI 313
Query: 433 DGASEYIQILDLGSIVIK 450
D A I L + K
Sbjct: 314 DRADPLFAISSLLGTLFK 331
>gi|58331833|ref|NP_001011112.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana)
tropicalis]
gi|54038730|gb|AAH84510.1| replication factor C (activator 1) 5 [Xenopus (Silurana)
tropicalis]
gi|89268121|emb|CAJ83540.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana)
tropicalis]
Length = 335
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 115/233 (49%), Positives = 159/233 (68%), Gaps = 13/233 (5%)
Query: 26 GKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIA 85
G++RN +PWVEKYRP+T+DD+I Q+++S +++ +S LPH LFYGPPGTGKTST++A
Sbjct: 10 GQSRN--LPWVEKYRPQTLDDLISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILA 67
Query: 86 ACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILD 144
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILD
Sbjct: 68 CAKQLYKDREFNSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILD 120
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL+ M+ R
Sbjct: 121 EADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPEMMVPR 180
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
L+++ ++E V ++ LV S GDMRR++ LQS G V ED +
Sbjct: 181 LEHVVKEECVDISPDGMKALVTLSNGDMRRSLNILQST---NMAYGKVTEDTV 230
>gi|352682669|ref|YP_004893193.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
gi|350275468|emb|CCC82115.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
Length = 321
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 143/206 (69%), Gaps = 7/206 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPK+ ++++ +E+ + L + + ++PH LFYGPPGTGKT+T + +L+G+
Sbjct: 6 WFEKYRPKSFAEIVDLEEIKARLAEFIKAGNMPHLLFYGPPGTGKTTTALVLARELYGER 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ +G PFK+V+LDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPAG-------GAPFKLVVLDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME +TRF L+ NYVS II+P+ SRC+ FRF PL ++ ++ RL+YI EQE +
Sbjct: 119 QALRRIMEMYAATTRFVLLANYVSGIIEPIQSRCAVFRFSPLPKDAVVARLRYIAEQEGL 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQ 240
ALE + + + GDMRRAIT LQ
Sbjct: 179 KVTQDALEAIFDFTQGDMRRAITALQ 204
>gi|426196606|gb|EKV46534.1| hypothetical protein AGABI2DRAFT_71819 [Agaricus bisporus var.
bisporus H97]
Length = 344
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 107/227 (47%), Positives = 156/227 (68%), Gaps = 7/227 (3%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
S+ K +G + +PWVEKYRP T+DDV+ +++ S +++ + LPH LFYGPP
Sbjct: 9 SNGKGKEVDTGNADAESLPWVEKYRPVTLDDVVSHKDITSTIERFIERNRLPHLLFYGPP 68
Query: 76 GTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
GTGKTST++A +++G+ Y+++ILELNASDDRGI V+R+++K FA +T + F++
Sbjct: 69 GTGKTSTILAVARRIYGNSYKKQILELNASDDRGIDVVREQIKQFA-ETRTLFSKG---- 123
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
FK++ILDEAD MT AAQAALRR +E+ TK+ RFC+ICNYV+ I + SRC++FRF P
Sbjct: 124 --FKLIILDEADMMTQAAQAALRRVIEQFTKNVRFCIICNYVNKITPAIQSRCTRFRFSP 181
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
L + R+ + E E+V + L++ S GDMRRA+ LQ+C
Sbjct: 182 LPMTEVEKRVDMVVEAENVPLTTEGKNALLKLSKGDMRRALNVLQAC 228
>gi|406607522|emb|CCH40993.1| Replication factor C subunit 2 [Wickerhamomyces ciferrii]
Length = 316
Score = 227 bits (579), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 124/280 (44%), Positives = 175/280 (62%), Gaps = 29/280 (10%)
Query: 76 GTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG-- 132
TGKTST++A +L+G ++ + R+LELNASD+RGI ++R+KVK FA+ T S + +
Sbjct: 14 STGKTSTILALTKELYGPELSKTRVLELNASDERGISIVREKVKNFARLTVSNPSSEDLE 73
Query: 133 -KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
PCPP+KI+ILDEADSMT AQ+ALRRTME + TRFCLICNY++ II PL SRCSKF
Sbjct: 74 KYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYITRIIDPLASRCSKF 133
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK----- 246
RFKPL N L RLQ+I +QE++ + LE +++ + GD+R+AIT LQS ARL
Sbjct: 134 RFKPLDNNDALLRLQHIQQQENIRLEDGVLEEVLKIASGDLRKAITFLQSAARLHSRLKI 193
Query: 247 ---------------GGEGIVNEDVLEVTGVIPKPWIEKLLKVD---SFQVLEKYIEDLI 288
E I + + E+ G +PK ++ +LK+ +FQ + K ++D I
Sbjct: 194 GLEDEDGDLELDDQDSQEQITIKSIREIAGSVPKDVLDGILKISEEKNFQKIFKIVDDTI 253
Query: 289 LEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVET 328
E +S + +Q HD ++L S +QK F + L ET
Sbjct: 254 SEGWSGVDIVNQLHDELILNDLYSSEQKNQFSQI--LFET 291
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 23/146 (15%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKG--------------------GEGIVNEDVLEVT 361
LE +++ + GD+R+AIT LQS ARL E I + + E+
Sbjct: 163 LEEVLKIASGDLRKAITFLQSAARLHSRLKIGLEDEDGDLELDDQDSQEQITIKSIREIA 222
Query: 362 GVIPNPWIEKLLKVD---SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKA 418
G +P ++ +LK+ +FQ + K ++D I E +S + +Q HD ++ S +QK
Sbjct: 223 GSVPKDVLDGILKISEEKNFQKIFKIVDDTISEGWSGVDIVNQLHDELILNDLYSSEQKN 282
Query: 419 LILEKLAECNARLQDGASEYIQILDL 444
+ L E + RL +G E++QIL+L
Sbjct: 283 QFSQILFETDQRLSNGTDEHLQILNL 308
>gi|67478786|ref|XP_654775.1| Replication factor C subunit 4 [Entamoeba histolytica HM-1:IMSS]
gi|56471850|gb|EAL49389.1| Replication factor C subunit 4, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449704169|gb|EMD44462.1| replication factor C subunit 4, putative [Entamoeba histolytica
KU27]
Length = 329
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 119/293 (40%), Positives = 188/293 (64%), Gaps = 11/293 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPKT+DDV Q+EV+ +LK L+ LP+ LF+GPPG+GKT++++A H+LF
Sbjct: 7 WSEKYRPKTLDDVQGQEEVIKLLKSSLNSG-LPNLLFFGPPGSGKTTSILAVAHELFQGY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++ER+LELNAS+ RGI+++R +K +A Q + + DG P +K++ILDE+D++T AQ
Sbjct: 66 FKERVLELNASNQRGIEMVRTTLKNYAMQDVTHY--DGTP--DYKLIILDESDALTPDAQ 121
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME TK+TRFCLICNY+S I+ P++SRC KFRF L + + RLQ ICE+E
Sbjct: 122 TALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGF 181
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
+A++ + S GD+R I LQ ++ + +D+ V GV+P I +++ +
Sbjct: 182 SVTNEAIQAVSILSEGDLRYGIGLLQKLSQ-GINHSVTPQDISNVAGVVPSKEITEIIHL 240
Query: 275 -DSFQVLEKYIEDLIL---EAYSATQLFDQFHDIVML-ASSLSDKQKALFKAL 322
+ V + Y++ + L + +SA + Q D+ + +L+++++ LF L
Sbjct: 241 CQNGSVNDLYLKAMSLVVEQNFSADSILSQLRDVYIEDCVNLTNQERCLFLQL 293
>gi|148233376|ref|NP_001080677.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus laevis]
gi|27882432|gb|AAH44712.1| Rfc5-prov protein [Xenopus laevis]
Length = 335
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 114/232 (49%), Positives = 159/232 (68%), Gaps = 13/232 (5%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
++RN +PWVEKYRP+T+DD+I Q+++S +++ +S LPH LFYGPPGTGKTST++A
Sbjct: 11 QSRN--LPWVEKYRPQTLDDLISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILAC 68
Query: 87 CHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDE
Sbjct: 69 AKQLYKDREFNSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDE 121
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL+ + M+ RL
Sbjct: 122 ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSSDMMIPRL 181
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
+++ ++E V ++ LV S GDMRR++ LQS G V ED +
Sbjct: 182 EHVVKEERVDISPDGMKALVTLSNGDMRRSLNILQST---NMAYGKVTEDTV 230
>gi|392565350|gb|EIW58527.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 353
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/210 (50%), Positives = 147/210 (70%), Gaps = 7/210 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV+ ++ S + K + LPH LFYGPPGTGKTST++A +++G
Sbjct: 34 LPWVEKYRPVTLDDVVSHHDITSTIVKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYG 93
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ YR++ILELNASDDRGI V+R+++K FA +T + F + FK++ILDEAD MT A
Sbjct: 94 NDYRKQILELNASDDRGIDVVREQIKNFA-ETRTLFAKG------FKLIILDEADMMTTA 146
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRR +E+ TK+ RFC+ICNYV+ II + SRC++FRF PL + RL + E E
Sbjct: 147 AQSALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPITEVEKRLNSVIEAE 206
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSC 242
V + L++ S GDMRRA+ LQ+C
Sbjct: 207 GVKLTEDGKKALLKLSKGDMRRALNVLQAC 236
>gi|242211529|ref|XP_002471602.1| predicted protein [Postia placenta Mad-698-R]
gi|220729278|gb|EED83155.1| predicted protein [Postia placenta Mad-698-R]
Length = 350
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/213 (50%), Positives = 149/213 (69%), Gaps = 7/213 (3%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N +PWVEKYRP T+DDV+ +++ S ++K + LPH LFYGPPGTGKTST++A +
Sbjct: 28 NDNLPWVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARR 87
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
++G YR++ILELNASDDRGI V+R+++K FA +T + F + +K++ILDEAD M
Sbjct: 88 IYGKDYRKQILELNASDDRGIDVVREQIKNFA-ETRTLFLKG------YKLIILDEADMM 140
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AAQAALRR +E+ TK+ RFC+ICNYV+ II + SRC++FRF PL + RL +
Sbjct: 141 TTAAQAALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPITEVERRLSGVI 200
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
E E V + L++ S GDMRRA+ LQ+C
Sbjct: 201 EAEGVKLTEDGKKALLKLSKGDMRRALNVLQAC 233
>gi|426247312|ref|XP_004017430.1| PREDICTED: replication factor C subunit 5 isoform 1 [Ovis aries]
Length = 336
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/247 (48%), Positives = 160/247 (64%), Gaps = 12/247 (4%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
S+ K + K RN +PWVEKYRP+T+DD+I Q+++S ++K +S LPH L YGPP
Sbjct: 4 SAHKQQQPEAAKIRN--LPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPP 61
Query: 76 GTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134
GTGKTST++A QL+ D + +LELNASDDRGI ++R + +FA T + F +
Sbjct: 62 GTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG--- 117
Query: 135 CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
FK+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF
Sbjct: 118 ---FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFG 174
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 254
PL M+ RL+++ E+E V ++ L+ S GDMRRA+ LQS G + E
Sbjct: 175 PLTPELMVPRLEHVVEEEKVDISEDGMKALITLSSGDMRRALNILQSTNMAFG--KVTEE 232
Query: 255 DVLEVTG 261
V TG
Sbjct: 233 TVYTCTG 239
>gi|407043555|gb|EKE42013.1| replication factor C subunit 4, putative [Entamoeba nuttalli P19]
Length = 329
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/293 (40%), Positives = 188/293 (64%), Gaps = 11/293 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPKT+DDV Q+EV+ +LK L+ LP+ LF+GPPG+GKT++++A H+LF
Sbjct: 7 WSEKYRPKTLDDVQGQEEVIKLLKSSLNSG-LPNLLFFGPPGSGKTTSILAVAHELFQGY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++ER+LELNAS+ RGI+++R +K +A Q + + DG P +K++ILDE+D++T AQ
Sbjct: 66 FKERVLELNASNQRGIEMVRTTLKNYAMQDVTHY--DG--IPDYKLIILDESDALTPDAQ 121
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME TK+TRFCLICNY+S I+ P++SRC KFRF L + + RLQ ICE+E
Sbjct: 122 TALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGF 181
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
+A++ + S GD+R I LQ ++ + +D+ V GV+P I +++ +
Sbjct: 182 SVTNEAIQAVSILSEGDLRYGIGLLQKLSQ-GINHSVTPQDISNVAGVVPSKEITEIIHL 240
Query: 275 -DSFQVLEKYIEDLIL---EAYSATQLFDQFHDIVML-ASSLSDKQKALFKAL 322
+ V + Y++ + L + +SA + Q D+ + +L+++++ LF L
Sbjct: 241 CQNGSVNDLYLKAMSLVVEQNFSADSILSQLRDVYIEDCVNLTNQERCLFLQL 293
>gi|389845694|ref|YP_006347933.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|448616684|ref|ZP_21665394.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|388243000|gb|AFK17946.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|445751339|gb|EMA02776.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
Length = 330
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/272 (43%), Positives = 164/272 (60%), Gaps = 13/272 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DD+ Q+E+V L+ + DLPH LF GP G GKT++ A L+GD
Sbjct: 19 WIEKYRPQTLDDIYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARTLYGDD 78
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD+RGI V+RD++K FA+ S FN P + I+ LDEADS+T+ AQ
Sbjct: 79 WRGNFLELNASDERGIDVVRDRIKNFAR---SSFN----PERGYTIIFLDEADSLTNDAQ 131
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + TRF L CNY S II P+ SRC+ FRF PL ++ + + + I E E +
Sbjct: 132 SALRRTMEEFSDKTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQTRDIAEAEGI 191
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
L+ LV +GGDMRRAI LQ+ A GE + E V +T IEK+++
Sbjct: 192 ELTEGGLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYLITSTARPEDIEKMVRA 249
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFH 302
F K +E LI++ + + DQ H
Sbjct: 250 AIDGEFTAARKQLETLIVDTGMAGGDIIDQLH 281
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
L+ LV +GGDMRRAI LQ+ A GE + E V +T IEK+++
Sbjct: 197 GLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYLITSTARPEDIEKMVRAAIDGE 254
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F K +E LI++ + + DQ H V L ++ ++E++ E + R+ +GA+
Sbjct: 255 FTAARKQLETLIVDTGMAGGDIIDQLHRSVWD-FDLDERDAVHLMERIGEADYRISEGAN 313
Query: 437 EYIQ 440
E +Q
Sbjct: 314 EQVQ 317
>gi|440912210|gb|ELR61801.1| Replication factor C subunit 5 [Bos grunniens mutus]
Length = 340
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 119/247 (48%), Positives = 160/247 (64%), Gaps = 12/247 (4%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
S+ K + K RN +PWVEKYRP+T+DD+I Q+++S ++K +S LPH L YGPP
Sbjct: 4 SARKQQQPDAAKIRN--LPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPP 61
Query: 76 GTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134
GTGKTST++A QL+ D + +LELNASDDRGI ++R + +FA T + F +
Sbjct: 62 GTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG--- 117
Query: 135 CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
FK+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF
Sbjct: 118 ---FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFG 174
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 254
PL M+ RL+++ E+E V ++ L+ S GDMRRA+ LQS G + E
Sbjct: 175 PLTPELMVPRLEHVVEEEKVDISEDGMKALITLSSGDMRRALNILQSTNMAFG--KVTEE 232
Query: 255 DVLEVTG 261
V TG
Sbjct: 233 TVYTCTG 239
>gi|405123808|gb|AFR98571.1| DNA replication factor [Cryptococcus neoformans var. grubii H99]
Length = 373
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/268 (44%), Positives = 168/268 (62%), Gaps = 14/268 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DDV+ +++ S ++K + LPH L YGPPGTGKTST++A +L+G
Sbjct: 54 LPWVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYG 113
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR+ ILELNASDDRGI V+R+++K FA T F++ FK+VILDEAD MT A
Sbjct: 114 PAYRKHILELNASDDRGIDVVREQIKNFA-MTKVLFSKG------FKLVILDEADMMTQA 166
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRR +E+ TK+ RFC++CNYV+ I + SRC++FRF PL E + ++ + ++E
Sbjct: 167 AQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKE 226
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW-IEKL 271
V + L++ S GDMRRA+ LQ+C IV+E + P P IE++
Sbjct: 227 GVNLTDDGRDALLKLSRGDMRRALNVLQAC---HAAYDIVDETAVYNCTGNPHPRDIERV 283
Query: 272 LK---VDSFQVLEKYIEDLILEAYSATQ 296
++ VD F I L +E A Q
Sbjct: 284 VQSMMVDEFGTAYSLITTLKIEKGLALQ 311
>gi|444317044|ref|XP_004179179.1| hypothetical protein TBLA_0B08450 [Tetrapisispora blattae CBS 6284]
gi|387512219|emb|CCH59660.1| hypothetical protein TBLA_0B08450 [Tetrapisispora blattae CBS 6284]
Length = 333
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 160/245 (65%), Gaps = 11/245 (4%)
Query: 25 SGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
SG RN +PWVEKYRP +D+V Q EVVS +++ +S LPH LFYGPPGTGKTST+
Sbjct: 2 SGNNRNVDNLPWVEKYRPNKLDEVYGQNEVVSTVRRFVSEGKLPHLLFYGPPGTGKTSTI 61
Query: 84 IAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
+A +++G+ Y +LELNASDDRGI V+R+++K FA T F++ FK++IL
Sbjct: 62 VALAREIYGNNYSNMVLELNASDDRGIDVVRNQIKEFA-STRQIFSKG------FKLIIL 114
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT+AAQ ALRR +EK TK+TRFC++ NY + L SRC++FRF+PL +M
Sbjct: 115 DEADAMTNAAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPIESMRQ 174
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKGGEGIVNED-VLEVTG 261
R+ + +E V AL ++ S GDMR+ + +Q+C A E ++E+ V E G
Sbjct: 175 RIDNVIVKEKVKISEDALNATLKLSKGDMRKVLNVIQACQAGQNSNENEIDEELVYECIG 234
Query: 262 VIPKP 266
PKP
Sbjct: 235 T-PKP 238
>gi|344295239|ref|XP_003419321.1| PREDICTED: replication factor C subunit 5 [Loxodonta africana]
Length = 343
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 117/239 (48%), Positives = 159/239 (66%), Gaps = 12/239 (5%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
++ K+RN +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST+
Sbjct: 13 SAAKSRN--LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTI 70
Query: 84 IAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
+A QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VI
Sbjct: 71 LACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVI 123
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+
Sbjct: 124 LDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMV 183
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
RL+++ E+E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 184 PRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG 240
>gi|403415842|emb|CCM02542.1| predicted protein [Fibroporia radiculosa]
Length = 358
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 110/231 (47%), Positives = 158/231 (68%), Gaps = 10/231 (4%)
Query: 15 PSSSK---TSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLF 71
PS +K +V +G + +PWVEKYRP ++DD++ +++ S ++K + LPH LF
Sbjct: 18 PSEAKGKGKAVELNGGHDIENLPWVEKYRPVSMDDIVSHKDITSTIEKFIEKNQLPHLLF 77
Query: 72 YGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131
YGPPGTGKTST++A +++G+ YR++ILELNASDDRGI V+R+++K FA +T + F +
Sbjct: 78 YGPPGTGKTSTILAVARRIYGNDYRKQILELNASDDRGIDVVREQIKNFA-ETRTLFLKG 136
Query: 132 GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
+K++ILDEAD MT AAQAALRR +E+ TK+ RFC+ICNYV+ II + SRC++F
Sbjct: 137 ------YKLIILDEADMMTTAAQAALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRF 190
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
RF PL + RL + E E V + L++ S GDMRRA+ LQ+C
Sbjct: 191 RFSPLPIPEVERRLNSVIEAEGVKLTEDGKKALLKLSKGDMRRALNVLQAC 241
>gi|401839265|gb|EJT42559.1| RFC3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 340
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 164/248 (66%), Gaps = 10/248 (4%)
Query: 22 VSTSGKTRNKP-VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKT 80
+S +NK +PWVEKYRP+T+D+V Q EV+S ++K + LPH LFYGPPGTGKT
Sbjct: 1 MSAGADKKNKENLPWVEKYRPETLDEVYGQNEVISTVRKFVDQGKLPHLLFYGPPGTGKT 60
Query: 81 STMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
ST++A +++G Y +LELNASDDRGI V+R+++K FA T F++ FK+
Sbjct: 61 STIVALAREIYGRNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKL 113
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
+ILDEAD+MT+AAQ ALRR +E+ TK+TRFC++ NY + L SRC++FRF+PL +
Sbjct: 114 IILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEA 173
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKG-GEGIVNEDVLE 258
+ R+ + +E + +A + L+E S GDMRR + LQSC A L GE +++DV+
Sbjct: 174 IERRIANVLVREKLKLSPEAEKALIELSNGDMRRVLNVLQSCKATLDNPGEDEISDDVIY 233
Query: 259 VTGVIPKP 266
P+P
Sbjct: 234 ECCGAPRP 241
>gi|365758856|gb|EHN00681.1| Rfc3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 340
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 164/248 (66%), Gaps = 10/248 (4%)
Query: 22 VSTSGKTRNKP-VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKT 80
+S +NK +PWVEKYRP+T+D+V Q EV+S ++K + LPH LFYGPPGTGKT
Sbjct: 1 MSAGADKKNKENLPWVEKYRPETLDEVYGQNEVISTVRKFVDQGKLPHLLFYGPPGTGKT 60
Query: 81 STMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
ST++A +++G Y +LELNASDDRGI V+R+++K FA T F++ FK+
Sbjct: 61 STIVALAREIYGRNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKL 113
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
+ILDEAD+MT+AAQ ALRR +E+ TK+TRFC++ NY + L SRC++FRF+PL +
Sbjct: 114 IILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEA 173
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKG-GEGIVNEDVLE 258
+ R+ + +E + +A + L+E S GDMRR + LQSC A L GE +++DV+
Sbjct: 174 IERRIANVLVREKLKLSPEAEKALIELSNGDMRRVLNVLQSCKATLDNPGEDEISDDVIY 233
Query: 259 VTGVIPKP 266
P+P
Sbjct: 234 ECCGAPRP 241
>gi|410923359|ref|XP_003975149.1| PREDICTED: replication factor C subunit 5-like [Takifugu rubripes]
Length = 335
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 164/243 (67%), Gaps = 12/243 (4%)
Query: 22 VSTSGKT--RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGK 79
+S++ KT + + +PWVEKYRP+ +DD+I ++++S ++K ++ LPH LFYGPPGTGK
Sbjct: 1 MSSNSKTPLQKRNLPWVEKYRPQKLDDLISHRDILSTIQKFINEDKLPHLLFYGPPGTGK 60
Query: 80 TSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPF 138
TST++A QL+ D + +LELNASDDRGI V+R + +FA T + F + F
Sbjct: 61 TSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFAS-TRTIFKKG------F 113
Query: 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAE 198
K+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL+
Sbjct: 114 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSP 173
Query: 199 NTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE 258
+ M+ RL+++ +QES+ ++ +V S GDMRR++ LQS + E + E
Sbjct: 174 DQMIPRLEHVIQQESIDITPDGMKAIVTLSSGDMRRSLNILQSTS--MAYEKVTEETAYN 231
Query: 259 VTG 261
TG
Sbjct: 232 CTG 234
>gi|409041157|gb|EKM50643.1| hypothetical protein PHACADRAFT_152803 [Phanerochaete carnosa
HHB-10118-sp]
Length = 358
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 106/210 (50%), Positives = 149/210 (70%), Gaps = 7/210 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV+ +++ S ++K + LPH LFYGPPGTGKTST++A +++G
Sbjct: 40 LPWVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYG 99
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR++ILELNASDDRGI V+R+++K FA +T + F++ +K++ILDEAD MT A
Sbjct: 100 KDYRKQILELNASDDRGIDVVREQIKNFA-ETRTLFSKG------YKLIILDEADMMTTA 152
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQAALRR +E+ TK+ RFC+ICNYV+ II + SRC++FRF PL + R+ + E E
Sbjct: 153 AQAALRRVIEQYTKNVRFCIICNYVNKIIPAVQSRCTRFRFSPLPVPEVERRINGVIETE 212
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSC 242
V + L++ S GDMRRA+ LQ+C
Sbjct: 213 GVKITGDGRKALLKLSKGDMRRALNVLQAC 242
>gi|145592047|ref|YP_001154049.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
gi|158514167|sp|A4WLY0.1|RFCS2_PYRAR RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|145283815|gb|ABP51397.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
Length = 322
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/244 (45%), Positives = 155/244 (63%), Gaps = 10/244 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV + L++ + G ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NY+S II+P+ SR RF PL + + RL+YI + E V
Sbjct: 119 QALRRIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADNEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
ALE + E + GDMRRAI LQ A G+ I E V + G++ + + L
Sbjct: 179 KISDDALEAIYEFTQGDMRRAINALQIAA--TTGKEITEETVAKALGMVSPRLLRETLN- 235
Query: 275 DSFQ 278
D+F+
Sbjct: 236 DAFR 239
>gi|50309079|ref|XP_454545.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643680|emb|CAG99632.1| KLLA0E13201p [Kluyveromyces lactis]
Length = 329
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 147/210 (70%), Gaps = 7/210 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PW+EKYRP+T+DDV QQ VV+ ++K L LPH LFYGPPGTGKTST++A +++G
Sbjct: 8 LPWIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREIYG 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR +LELNASDDRGI V+R+++K FA T F++ FK++ILDEAD+MT+A
Sbjct: 68 SNYRNMVLELNASDDRGIDVVRNQIKEFA-STRQIFSKG------FKLIILDEADAMTNA 120
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +E+ TK+TRFC++ NY + L SRC++FRF+PL+E + R+ + +E
Sbjct: 121 AQNALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKE 180
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ D +A L+ S GDMRRA+ LQ+
Sbjct: 181 HLKLDPQAHAALLRLSSGDMRRALNVLQAA 210
>gi|395514036|ref|XP_003761227.1| PREDICTED: replication factor C subunit 5 [Sarcophilus harrisii]
Length = 343
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 157/235 (66%), Gaps = 10/235 (4%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+++ +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++A
Sbjct: 18 TKSRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACA 77
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDEA
Sbjct: 78 KQLYKDKEFNSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEA 130
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+
Sbjct: 131 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 190
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
++ E+E V ++ L+ S GDMRRA+ LQS G + E V TG
Sbjct: 191 HVIEEEKVDISEDGMKALITLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG 243
>gi|164656737|ref|XP_001729496.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966]
gi|159103387|gb|EDP42282.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966]
Length = 349
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 107/234 (45%), Positives = 152/234 (64%), Gaps = 7/234 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++D ++ Q + + L+K ++ LPH LFYGPPGTGKTST++A +L+G
Sbjct: 23 LPWVEKYRPSSLDQIMSHQHITATLEKFITANQLPHLLFYGPPGTGKTSTIMALAARLYG 82
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+R +LELNASDDRGI V+R ++K FA T + F+ FK+VILDEAD+MT A
Sbjct: 83 ASFRNNVLELNASDDRGIDVVRGQIKAFA-STRNVFSTQKD---TFKLVILDEADAMTQA 138
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQAALRR ME+ T++ RFC+ICNYV+ II + SRC++FRF PL + ++ + E
Sbjct: 139 AQAALRRVMEQYTRNVRFCIICNYVNKIIPAIQSRCTRFRFSPLDRVQVERQIDSVIAAE 198
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP 266
D KA +++ GDMRRA+ LQ+C +++ED + + P P
Sbjct: 199 HCQIDAKAKHAILQLCQGDMRRALNILQAC---HAANDMIDEDSVYLCTGHPHP 249
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 13/142 (9%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IEKLLKV--- 375
KA +++ GDMRRA+ LQ+C +++ED + + P+P IE +
Sbjct: 205 KAKHAILQLCQGDMRRALNILQAC---HAANDMIDEDSVYLCTGHPHPQDIETAFQAMLE 261
Query: 376 DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
F + I+ L +E + T L H +V+S L + +L+ +A+ RL
Sbjct: 262 QEFTTAFQTIQTLRVEKGLALTDLLTGMHALVLSL-ELPPHARVFLLDHMAQIEYRLSTN 320
Query: 435 ASEYIQILDLGSIVIKANKTAV 456
ASE +Q+ S ++ + K AV
Sbjct: 321 ASERVQL----SALLASVKAAV 338
>gi|82540400|ref|XP_724521.1| replication factor C3 [Plasmodium yoelii yoelii 17XNL]
gi|23479189|gb|EAA16086.1| replication factor C3 [Plasmodium yoelii yoelii]
Length = 344
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 117/282 (41%), Positives = 175/282 (62%), Gaps = 15/282 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++D+I ++V+S ++K + +LPH L +GPPGTGKTST++A C +L+G
Sbjct: 13 IPWVEKYRPGVLNDIISHEQVISTIRKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYG 72
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ +LELNASDDRGI V+R+++KTFA ++ + +N + K++ILDEAD MT
Sbjct: 73 ESRSSFVLELNASDDRGITVVREQIKTFA-ESKNHYNICERTS--LKLIILDEADHMTFP 129
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ A+RR ME K+ RFCLICNYV+ I + SRC+ FRF PL E ML + I + E
Sbjct: 130 AQNAMRRIMENYAKNVRFCLICNYVNKITPAIQSRCTSFRFSPLKEEYMLNKALDIAKSE 189
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP-----W 267
+V +E+L+ GDMRR + CLQ + L +++E+V+ T IP P
Sbjct: 190 NVNLTKNGVESLIRVGRGDMRRILNCLQVVS-LSHKNMVIDENVILSTLDIPLPSEIKFI 248
Query: 268 IEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
+E L K +S++++ K ED + YS + ++ V+
Sbjct: 249 LEHLTKSTIKESYEIITKLQED---KGYSIKDIMICLYETVL 287
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 13/139 (9%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----WIEKLLK 374
+E+L+ GDMRR + CLQ + L +++E+V+ T IP P +E L K
Sbjct: 196 NGVESLIRVGRGDMRRILNCLQVVS-LSHKNMVIDENVILSTLDIPLPSEIKFILEHLTK 254
Query: 375 V---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 431
+S++++ K ED + YS + ++ V++ D L+L+ E R
Sbjct: 255 STIKESYEIITKLQED---KGYSIKDIMICLYETVLTY-DYPDSAICLLLKNFGEIEERC 310
Query: 432 QDGASEYIQILDLGSIVIK 450
GA+E I + L S I+
Sbjct: 311 ASGATEQITLSSLISAFIE 329
>gi|194042984|ref|XP_001926304.1| PREDICTED: replication factor C subunit 5 [Sus scrofa]
Length = 340
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 115/235 (48%), Positives = 156/235 (66%), Gaps = 10/235 (4%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + +PWVEKYRP+T+DD+I Q+++S ++K +S LPH L YGPPGTGKTST++A
Sbjct: 15 TKIRNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACA 74
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDEA
Sbjct: 75 KQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEA 127
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+
Sbjct: 128 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 187
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
++ E+E V ++ L+ S GDMRRA+ LQS G + E V TG
Sbjct: 188 HVVEEEKVDISEDGMKALITLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG 240
>gi|134118754|ref|XP_771880.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254484|gb|EAL17233.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 373
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 167/268 (62%), Gaps = 14/268 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DDV+ +++ S ++K + LPH L YGPPGTGKTST++A +L+G
Sbjct: 54 LPWVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYG 113
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR+ ILELNASDDRGI V+R+++K FA T F++ FK+VILDEAD MT A
Sbjct: 114 PAYRKHILELNASDDRGIDVVREQIKNFA-MTKVLFSKG------FKLVILDEADMMTQA 166
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRR +E+ TK+ RFC++CNYV+ I + SRC++FRF PL E + ++ + ++E
Sbjct: 167 AQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKE 226
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW-IEKL 271
V + L++ S GDMRRA+ LQ+C IV+E + P P IE++
Sbjct: 227 GVNLTDDGRDALLKLSRGDMRRALNVLQAC---HAAYDIVDETAVYNCTGNPHPRDIERV 283
Query: 272 LK---VDSFQVLEKYIEDLILEAYSATQ 296
++ D F I L +E A Q
Sbjct: 284 VQSMMADEFGTAYSLITSLKIEKGLALQ 311
>gi|440801293|gb|ELR22313.1| Replication factor C protein [Acanthamoeba castellanii str. Neff]
Length = 296
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 173/300 (57%), Gaps = 50/300 (16%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTS 81
+S +G R +PWVEKYRPK +DDV Q+EVV LKK L +LPH L YGPPGTGKTS
Sbjct: 5 LSFAGAKRAAKIPWVEKYRPKKVDDVAHQEEVVRALKKSLDTGNLPHLLLYGPPGTGKTS 64
Query: 82 TMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
T +A H+L+G ++++ R++ELNASD+RGI VIR KVK+F+Q + + +G+
Sbjct: 65 TALAIGHELYGPELFKTRVMELNASDERGINVIRSKVKSFSQVATAAASYNGRQ------ 118
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
II PL SRC+KFRF+PL +T
Sbjct: 119 ---------------------------------------IIDPLASRCAKFRFRPLEGDT 139
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVT 260
M +L IC QE++ +AL T+V SGGD+R+AIT LQS + L + + + ++EV
Sbjct: 140 MGDKLVAICSQENLHITEEALRTVVSISGGDLRKAITTLQSVSSLYDEKEVTEDAIVEVA 199
Query: 261 GVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
GVIP +++L+ SF L+ + D+ ++ YS+ + Q HD ++ A +LS+KQKA
Sbjct: 200 GVIPPKKVDRLMDACASGSFFRLQSAVTDMTMDGYSSALVLSQMHDRIVDA-ALSNKQKA 258
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 85/134 (63%), Gaps = 4/134 (2%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+AL T+V SGGD+R+AIT LQS + L + + + ++EV GVIP +++L+
Sbjct: 158 EALRTVVSISGGDLRKAITTLQSVSSLYDEKEVTEDAIVEVAGVIPPKKVDRLMDACASG 217
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
SF L+ + D+ ++ YS+ + Q HD ++ A +LS+KQKA I+++LA + L D A
Sbjct: 218 SFFRLQSAVTDMTMDGYSSALVLSQMHDRIVDA-ALSNKQKAEIMKRLAAADQALVDSAD 276
Query: 437 EYIQILDLGSIVIK 450
E++Q+ D+ + +++
Sbjct: 277 EFLQLFDVCAFMMR 290
>gi|426247314|ref|XP_004017431.1| PREDICTED: replication factor C subunit 5 isoform 2 [Ovis aries]
Length = 316
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 119/247 (48%), Positives = 160/247 (64%), Gaps = 12/247 (4%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
S+ K + K RN +PWVEKYRP+T+DD+I Q+++S ++K +S LPH L YGPP
Sbjct: 4 SAHKQQQPEAAKIRN--LPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPP 61
Query: 76 GTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134
GTGKTST++A QL+ D + +LELNASDDRGI ++R + +FA T + F +
Sbjct: 62 GTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG--- 117
Query: 135 CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
FK+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF
Sbjct: 118 ---FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFG 174
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 254
PL M+ RL+++ E+E V ++ L+ S GDMRRA+ LQS G + E
Sbjct: 175 PLTPELMVPRLEHVVEEEKVDISEDGMKALITLSSGDMRRALNILQSTNMAFG--KVTEE 232
Query: 255 DVLEVTG 261
V TG
Sbjct: 233 TVYTCTG 239
>gi|115496354|ref|NP_001068826.1| replication factor C subunit 5 [Bos taurus]
gi|79160183|gb|AAI08106.1| Replication factor C (activator 1) 5, 36.5kDa [Bos taurus]
gi|296478479|tpg|DAA20594.1| TPA: replication factor C 5 [Bos taurus]
Length = 316
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 119/247 (48%), Positives = 160/247 (64%), Gaps = 12/247 (4%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
S+ K + K RN +PWVEKYRP+T+DD+I Q+++S ++K +S LPH L YGPP
Sbjct: 4 SAHKQQQPEAAKIRN--LPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPP 61
Query: 76 GTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134
GTGKTST++A QL+ D + +LELNASDDRGI ++R + +FA T + F +
Sbjct: 62 GTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG--- 117
Query: 135 CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
FK+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF
Sbjct: 118 ---FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFG 174
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 254
PL M+ RL+++ E+E V ++ L+ S GDMRRA+ LQS G + E
Sbjct: 175 PLTPELMVPRLEHVVEEEKVDISEDGMKALITLSSGDMRRALNILQSTNMAFG--KVTEE 232
Query: 255 DVLEVTG 261
V TG
Sbjct: 233 TVYTCTG 239
>gi|395326617|gb|EJF59024.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 354
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 150/210 (71%), Gaps = 7/210 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV+ ++ S ++K + LPH LFYGPPGTGKTST++A +++G
Sbjct: 35 LPWVEKYRPVTLDDVVSHHDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYG 94
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR++ILELNASDDRGI+V+R+++K FA +T + F++ +K++ILDEAD MT A
Sbjct: 95 TEYRKQILELNASDDRGIEVVREQIKNFA-ETRTLFSKG------YKLIILDEADMMTTA 147
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRR +E+ TK+ RFC+ICNYV+ II + SRC++FRF PL + R+ + + E
Sbjct: 148 AQSALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPIPEVEKRVNNVIDAE 207
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSC 242
V + + L++ S GDMRRA+ LQ+C
Sbjct: 208 GVKITAEGKQALLKLSKGDMRRALNVLQAC 237
>gi|225716862|gb|ACO14277.1| Replication factor C subunit 5 [Esox lucius]
Length = 335
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 162/236 (68%), Gaps = 12/236 (5%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
++RN +PWVEKYRP+T+DD+I ++++S ++K +S LPH LFYGPPGTGK ST++A
Sbjct: 10 QSRN--LPWVEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGKISTILAC 67
Query: 87 CHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145
QL+ D + +LELNASDDRGI V+R + +FA T + F + FK+VILDE
Sbjct: 68 AKQLYKDKEFNAMVLELNASDDRGIDVVRGPILSFAS-TRTIFKKG------FKLVILDE 120
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++ RF PL+++ M+ RL
Sbjct: 121 ADAMTRDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRSRFGPLSQDQMIPRL 180
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
+++ +QES+ ++ +V S GDMRR++ LQS + G + ++V TG
Sbjct: 181 EHVIQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYG--KVTEDNVYTCTG 234
>gi|126324700|ref|XP_001375103.1| PREDICTED: replication factor C subunit 5 [Monodelphis domestica]
Length = 342
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 111/230 (48%), Positives = 153/230 (66%), Gaps = 8/230 (3%)
Query: 13 DAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFY 72
+AP + +N+ +PWVEKYRP+T+D++I Q+++S ++K +S LPH L Y
Sbjct: 2 EAPPIRQQQQQQQPAAKNRNLPWVEKYRPQTLDELISHQDILSTIQKFISEDRLPHLLLY 61
Query: 73 GPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131
GPPGTGKTST++A QL+ D + +LELNASDDRGI ++R + +FA T + F +
Sbjct: 62 GPPGTGKTSTILACARQLYKDKEFNSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG 120
Query: 132 GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
FK+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++F
Sbjct: 121 ------FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRF 174
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
RF PL M+ RL+++ +E V ++ LV S GDMRRA+ LQS
Sbjct: 175 RFGPLTPELMVPRLEHVIAEEKVDVSEDGMKALVTLSSGDMRRALNILQS 224
>gi|50294179|ref|XP_449501.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528815|emb|CAG62477.1| unnamed protein product [Candida glabrata]
Length = 331
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 119/244 (48%), Positives = 160/244 (65%), Gaps = 11/244 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+T+DDV Q+EVV +KK + LPH LFYGPPGTGKTST++A ++G
Sbjct: 9 LPWVEKYRPQTLDDVYGQREVVGTVKKFVQEGKLPHLLFYGPPGTGKTSTIVALAKDIYG 68
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y +LELNASDDRGI V+R+++K FA T F++ FK++ILDEAD+MT+A
Sbjct: 69 KNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKLIILDEADAMTNA 121
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK TK+TRFC++ NY I L SRC++FRF+PL + + R+ + E
Sbjct: 122 AQNALRRIIEKYTKNTRFCILANYSHKITPALLSRCTRFRFQPLPNDAVEKRMANVLVHE 181
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQ-SCARLKGGEG-IVNEDVLEVTGVIPKPW-IE 269
+ A E L+E S GDMRR + LQ S A L+ E I +E + E G P+P I+
Sbjct: 182 HLRISPAAKEALLELSNGDMRRVLNVLQASKATLESPEDEITDEVIYECCGA-PRPQDIQ 240
Query: 270 KLLK 273
+LK
Sbjct: 241 TILK 244
>gi|301114403|ref|XP_002998971.1| replication factor C subunit 5 [Phytophthora infestans T30-4]
gi|262111065|gb|EEY69117.1| replication factor C subunit 5 [Phytophthora infestans T30-4]
Length = 353
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 114/238 (47%), Positives = 154/238 (64%), Gaps = 16/238 (6%)
Query: 9 KLGKDAPSSSKTSVSTSGKTRNKPV---PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGAD 65
K +DAPS S +RN+ PWVEKYRP ++DD+I QE++S L + +
Sbjct: 7 KSAEDAPSFEGIS------SRNRSTESWPWVEKYRPSSLDDLIAHQEIISTLNRLIDAQK 60
Query: 66 LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTA 125
LPH LFYGPPGTGKTS +IAA +L+G Y +LELNASDDRGI V+R+++K FA T
Sbjct: 61 LPHLLFYGPPGTGKTSMIIAAARRLYGKNYGSMVLELNASDDRGIDVVRNQIKEFA-GTK 119
Query: 126 SGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLT 185
F+Q K++ILDEADSMT+ AQ +LRR +EK TK+ RFCLICNYVS II L
Sbjct: 120 KLFSQG------VKLIILDEADSMTNDAQFSLRRVIEKYTKNARFCLICNYVSKIIPALQ 173
Query: 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
SRC++FRF PL E+ + R+++I + E + + ++ GDMRR + LQ+ +
Sbjct: 174 SRCTRFRFAPLNESQVSGRVKHIAQLEKLNMTEDGFKAILRLGQGDMRRILNILQATS 231
>gi|119873156|ref|YP_931163.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
gi|150415671|sp|A1RV38.1|RFCS2_PYRIL RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|119674564|gb|ABL88820.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
Length = 320
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 147/223 (65%), Gaps = 10/223 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV S L++ + ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NY+S II+P+ SR RF PL + +++RL+YI E E V
Sbjct: 119 QALRRIMEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAENEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
ALET+ E + GDMR+AI LQ A E + EDV+
Sbjct: 179 KISDDALETIYEFTQGDMRKAINALQIAA---ATEKEITEDVV 218
>gi|387849459|ref|NP_001248591.1| replication factor C subunit 5 [Macaca mulatta]
gi|402887809|ref|XP_003907273.1| PREDICTED: replication factor C subunit 5 [Papio anubis]
gi|355564724|gb|EHH21224.1| hypothetical protein EGK_04238 [Macaca mulatta]
gi|355759033|gb|EHH61566.1| hypothetical protein EGM_19495 [Macaca fascicularis]
gi|380786591|gb|AFE65171.1| replication factor C subunit 5 isoform 1 [Macaca mulatta]
gi|383414287|gb|AFH30357.1| replication factor C subunit 5 isoform 1 [Macaca mulatta]
Length = 340
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 117/238 (49%), Positives = 157/238 (65%), Gaps = 12/238 (5%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
+ K RN +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++
Sbjct: 14 AAKIRN--LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTIL 71
Query: 85 AACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VIL
Sbjct: 72 ACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVIL 124
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+
Sbjct: 125 DEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVP 184
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
RL+++ E+E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 185 RLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG 240
>gi|17554730|ref|NP_498521.1| Protein RFC-4 [Caenorhabditis elegans]
gi|1703051|sp|P53016.1|RFC4_CAEEL RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 subunit 4
gi|351049703|emb|CCD63405.1| Protein RFC-4 [Caenorhabditis elegans]
Length = 334
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 113/223 (50%), Positives = 154/223 (69%), Gaps = 4/223 (1%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
R K + W EKYRPKT+DD+ Q EVV++LK L G DLPH LFYGPPGTGKTS +A C
Sbjct: 11 RPKVLTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCR 70
Query: 89 QLF-GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
QLF +++ +R+L+LNASD+RGI V+R K+++F++ + +++ KI+ILDE D
Sbjct: 71 QLFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHRED--VLKLKIIILDEVD 128
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQAA+RR +E +K+TRF LICNYVS +I P+ SRC+KFRFK L + RL+
Sbjct: 129 AMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRT 188
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR-LKGGE 249
IC+ E L+ ++E S GD+RRA+ LQS A LK G+
Sbjct: 189 ICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLAPILKSGD 231
>gi|296213044|ref|XP_002753107.1| PREDICTED: replication factor C subunit 5 [Callithrix jacchus]
gi|403281561|ref|XP_003932252.1| PREDICTED: replication factor C subunit 5 [Saimiri boliviensis
boliviensis]
Length = 340
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 117/238 (49%), Positives = 157/238 (65%), Gaps = 12/238 (5%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
+ K RN +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++
Sbjct: 14 AAKIRN--LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTIL 71
Query: 85 AACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VIL
Sbjct: 72 ACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVIL 124
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+
Sbjct: 125 DEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVP 184
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
RL+++ E+E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 185 RLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG 240
>gi|151944257|gb|EDN62536.1| replication factor C subunit 3 [Saccharomyces cerevisiae YJM789]
gi|190409258|gb|EDV12523.1| replication factor C subunit 3 [Saccharomyces cerevisiae RM11-1a]
gi|256271294|gb|EEU06366.1| Rfc3p [Saccharomyces cerevisiae JAY291]
gi|259149079|emb|CAY82321.1| Rfc3p [Saccharomyces cerevisiae EC1118]
gi|323331837|gb|EGA73249.1| Rfc3p [Saccharomyces cerevisiae AWRI796]
gi|323335982|gb|EGA77259.1| Rfc3p [Saccharomyces cerevisiae Vin13]
gi|323346957|gb|EGA81235.1| Rfc3p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352828|gb|EGA85130.1| Rfc3p [Saccharomyces cerevisiae VL3]
gi|365763611|gb|EHN05138.1| Rfc3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 340
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 164/248 (66%), Gaps = 10/248 (4%)
Query: 22 VSTSGKTRNKP-VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKT 80
+STS + R+K +PWVEKYRP+T+D+V Q EV++ ++K + LPH LFYGPPGTGKT
Sbjct: 1 MSTSTEKRSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKT 60
Query: 81 STMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
ST++A +++G Y +LELNASDDRGI V+R+++K FA T F++ FK+
Sbjct: 61 STIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKL 113
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
+ILDEAD+MT+AAQ ALRR +E+ TK+TRFC++ NY + L SRC++FRF+PL +
Sbjct: 114 IILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEA 173
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKG-GEGIVNEDVLE 258
+ R+ + E + A + L+E S GDMRR + LQSC A L E +++DV+
Sbjct: 174 IERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIY 233
Query: 259 VTGVIPKP 266
P+P
Sbjct: 234 ECCGAPRP 241
>gi|323303302|gb|EGA57098.1| Rfc3p [Saccharomyces cerevisiae FostersB]
Length = 340
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 164/248 (66%), Gaps = 10/248 (4%)
Query: 22 VSTSGKTRNKP-VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKT 80
+STS + R+K +PWVEKYRP+T+D+V Q EV++ ++K + LPH LFYGPPGTGKT
Sbjct: 1 MSTSTEKRSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKT 60
Query: 81 STMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
ST++A +++G Y +LELNASDDRGI V+R+++K FA T F++ FK+
Sbjct: 61 STIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKL 113
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
+ILDEAD+MT+AAQ ALRR +E+ TK+TRFC++ NY + L SRC++FRF+PL +
Sbjct: 114 IILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEA 173
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKG-GEGIVNEDVLE 258
+ R+ + E + A + L+E S GDMRR + LQSC A L E +++DV+
Sbjct: 174 IERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIY 233
Query: 259 VTGVIPKP 266
P+P
Sbjct: 234 ECCGAPRP 241
>gi|327276150|ref|XP_003222833.1| PREDICTED: replication factor C subunit 5-like [Anolis
carolinensis]
Length = 342
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 117/250 (46%), Positives = 160/250 (64%), Gaps = 16/250 (6%)
Query: 13 DAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFY 72
+ PS +V ++ +PWVEKYRP+T++D+I Q+++S ++K +S LPH LFY
Sbjct: 8 EGPSERTVAVKSAN------LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLFY 61
Query: 73 GPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131
GPPGTGKTST++A QL+ D + +LELNASDDRGI ++R + +FA T + F +
Sbjct: 62 GPPGTGKTSTILACAKQLYKDKEFNSMVLELNASDDRGIGIVRGPILSFAS-TRTIFKKG 120
Query: 132 GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
FK+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++F
Sbjct: 121 ------FKLVILDEADAMTQEAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRF 174
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
RF PL M+ RL+++ E E V ++ LV S GDMRR++ LQS G +
Sbjct: 175 RFGPLTPELMVPRLKHVIESEKVDVSDDGMKALVTLSNGDMRRSLNILQSTNMAFG--KV 232
Query: 252 VNEDVLEVTG 261
E V TG
Sbjct: 233 TEETVYTCTG 242
>gi|6324039|ref|NP_014109.1| replication factor C subunit 3 [Saccharomyces cerevisiae S288c]
gi|585844|sp|P38629.1|RFC3_YEAST RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3; AltName: Full=Activator 1 40 kDa subunit
gi|439118|gb|AAA34969.1| replication factor C [Saccharomyces cerevisiae]
gi|841466|gb|AAC49062.1| Rfc3p [Saccharomyces cerevisiae]
gi|1050872|gb|AAC49110.1| replication factor C, 40 kDa subunit [Saccharomyces cerevisiae]
gi|1302375|emb|CAA96207.1| RFC3 [Saccharomyces cerevisiae]
gi|285814375|tpg|DAA10269.1| TPA: replication factor C subunit 3 [Saccharomyces cerevisiae
S288c]
gi|392297062|gb|EIW08163.1| Rfc3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 340
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 164/248 (66%), Gaps = 10/248 (4%)
Query: 22 VSTSGKTRNKP-VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKT 80
+STS + R+K +PWVEKYRP+T+D+V Q EV++ ++K + LPH LFYGPPGTGKT
Sbjct: 1 MSTSTEKRSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKT 60
Query: 81 STMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
ST++A +++G Y +LELNASDDRGI V+R+++K FA T F++ FK+
Sbjct: 61 STIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKL 113
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
+ILDEAD+MT+AAQ ALRR +E+ TK+TRFC++ NY + L SRC++FRF+PL +
Sbjct: 114 IILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEA 173
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKG-GEGIVNEDVLE 258
+ R+ + E + A + L+E S GDMRR + LQSC A L E +++DV+
Sbjct: 174 IERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIY 233
Query: 259 VTGVIPKP 266
P+P
Sbjct: 234 ECCGAPRP 241
>gi|348533450|ref|XP_003454218.1| PREDICTED: replication factor C subunit 5-like [Oreochromis
niloticus]
Length = 335
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 113/232 (48%), Positives = 161/232 (69%), Gaps = 13/232 (5%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
+TRN +PWVEKYRP+T+DD+I ++++S +++ +S LPH LFYGPPGTGKTST++A
Sbjct: 10 QTRN--LPWVEKYRPQTLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILAC 67
Query: 87 CHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145
QL+ + + +LELNASDDRGI V+R + +FA T + F + FK+VILDE
Sbjct: 68 ARQLYKEKEFNSMVLELNASDDRGIDVVRGPILSFAS-TRTIFKKG------FKLVILDE 120
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL+ + M+ RL
Sbjct: 121 ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRL 180
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
+++ +QE++ ++ +V S GDMRR++ LQS + G V ED +
Sbjct: 181 EHVIQQENIDITPDGMKGIVTLSTGDMRRSLNILQSTSM---AYGKVTEDTV 229
>gi|355716188|gb|AES05532.1| replication factor C 5, 36.5kDa [Mustela putorius furo]
Length = 337
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 117/238 (49%), Positives = 158/238 (66%), Gaps = 12/238 (5%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
+ K RN +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++
Sbjct: 34 AAKIRN--LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTIL 91
Query: 85 AACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A QL+ D + +LELNASDDRGI+++R + +FA T + F + FK+VIL
Sbjct: 92 ACAKQLYKDKEFGSMVLELNASDDRGIEIVRGPILSFAS-TRTIFKKG------FKLVIL 144
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+
Sbjct: 145 DEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVP 204
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
RL+++ E+E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 205 RLEHVIEEEKVDLSEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG 260
>gi|327311517|ref|YP_004338414.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
gi|326947996|gb|AEA13102.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
Length = 328
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 138/209 (66%), Gaps = 7/209 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ ++V++ +EV + LK+ + ++PH LFYGPPGTGKT+ + +L+GD
Sbjct: 8 WFEKYRPRSFEEVVDLEEVKARLKEFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGDA 67
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 68 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 120
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME +TRF L+ NYVS II P+ SRC+ FRF P+ + M RL YI +QE +
Sbjct: 121 QALRRIMEMYANTTRFILLANYVSRIIDPIISRCAVFRFPPMPKELMAKRLAYIAKQEGI 180
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCA 243
++ + E S GDMRRAI LQ A
Sbjct: 181 TVTEDGIDAIYEISQGDMRRAINLLQMAA 209
>gi|395834095|ref|XP_003790050.1| PREDICTED: replication factor C subunit 5 [Otolemur garnettii]
Length = 456
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 119/249 (47%), Positives = 160/249 (64%), Gaps = 12/249 (4%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
AP + K RN +PWVEKYRP+T++D+I Q+++S ++K +S LPH LFYG
Sbjct: 119 APKQQQEQQPAGTKIRN--LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLFYG 176
Query: 74 PPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
PPGTGKTST++A +L+ D + +LELNASDDRGI ++R + +FA T + F +
Sbjct: 177 PPGTGKTSTILACAKRLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG- 234
Query: 133 KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
FK+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FR
Sbjct: 235 -----FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFR 289
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
F PL M+ RL+++ E+E V ++ LV S GDMRRA+ LQS G +
Sbjct: 290 FGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVT 347
Query: 253 NEDVLEVTG 261
E V TG
Sbjct: 348 EETVYTCTG 356
>gi|443714846|gb|ELU07083.1| hypothetical protein CAPTEDRAFT_164264 [Capitella teleta]
Length = 333
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 107/218 (49%), Positives = 151/218 (69%), Gaps = 10/218 (4%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
++RN +PWVEKYRP+ +DD+I ++++S + + + LPH LFYGPPGTGKT+T++A
Sbjct: 8 ESRN--LPWVEKYRPQKLDDLISHKDIISTIGRFVKEERLPHLLFYGPPGTGKTTTILAV 65
Query: 87 CHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145
Q++ + +LELNASDDRGI ++RD++ +FA T + F FK+VILDE
Sbjct: 66 AKQIYAPKEFNSMVLELNASDDRGIGIVRDRILSFAS-TRTLFKSG------FKLVILDE 118
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD+MT+ AQ ALRR +EK T++TRFC+ICNY+S II L SRC++FRF PL M RL
Sbjct: 119 ADAMTNDAQNALRRVIEKFTENTRFCIICNYLSKIIPALQSRCTRFRFGPLLPEQMKPRL 178
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
QY+ EQE + ++ LV + GDMRR++ LQSC+
Sbjct: 179 QYVIEQEKLTVSEDGMDALVTLANGDMRRSLNILQSCS 216
>gi|410976710|ref|XP_003994756.1| PREDICTED: replication factor C subunit 5 [Felis catus]
Length = 340
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 117/237 (49%), Positives = 156/237 (65%), Gaps = 12/237 (5%)
Query: 26 GKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIA 85
K RN +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++A
Sbjct: 15 AKIRN--LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILA 72
Query: 86 ACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILD 144
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILD
Sbjct: 73 CAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILD 125
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ R
Sbjct: 126 EADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPR 185
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
L+++ E+E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 186 LEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG 240
>gi|332250708|ref|XP_003274494.1| PREDICTED: replication factor C subunit 5 isoform 1 [Nomascus
leucogenys]
gi|426374300|ref|XP_004054014.1| PREDICTED: replication factor C subunit 5 [Gorilla gorilla gorilla]
Length = 340
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 115/235 (48%), Positives = 156/235 (66%), Gaps = 10/235 (4%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++A
Sbjct: 15 TKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACA 74
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDEA
Sbjct: 75 KQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEA 127
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+
Sbjct: 128 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 187
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
++ E+E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 188 HVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG 240
>gi|344231516|gb|EGV63398.1| hypothetical protein CANTEDRAFT_98513 [Candida tenuis ATCC 10573]
Length = 331
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 113/261 (43%), Positives = 164/261 (62%), Gaps = 22/261 (8%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+T+D+V Q E+V ++K + LPH LFYGPPGTGKTST+IA +++G
Sbjct: 8 LPWVEKYRPETLDEVYGQSEIVDTVRKFVQEGKLPHLLFYGPPGTGKTSTIIALAREIYG 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y+ +LELNASDDRGI V+R+++K FA T F++ FK++ILDEAD+MT
Sbjct: 68 PKYKNMVLELNASDDRGIDVVRNQIKDFA-STMQIFSKG------FKLIILDEADAMTSV 120
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK TK+TRFC++ NY + L SRC++FRF+P+ + + RL+ + +E
Sbjct: 121 AQNALRRIIEKYTKNTRFCILANYSHKLNPALVSRCTRFRFQPIHTDAIRERLKNVVIKE 180
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKGGEGIVNEDVLEVTGVIPKP----- 266
+ A+E+L+ S GDMRRA+ LQSC A L + ++E+++ P+P
Sbjct: 181 KITIKPDAIESLLTLSQGDMRRALNVLQSCKASLDNPDDEIDEEMIYNCIGAPQPKDVET 240
Query: 267 ---------WIEKLLKVDSFQ 278
W L +D F+
Sbjct: 241 VLDSILKDDWTTAYLTMDKFK 261
>gi|321265444|ref|XP_003197438.1| DNA replication factor [Cryptococcus gattii WM276]
gi|317463918|gb|ADV25651.1| DNA replication factor, putative [Cryptococcus gattii WM276]
Length = 373
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 146/210 (69%), Gaps = 7/210 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DDV+ +++ ++K + LPH LFYGPPGTGKTST++A +L+G
Sbjct: 54 LPWVEKYRPVSLDDVVSHKDITGTIEKFIEAGRLPHLLFYGPPGTGKTSTVLALARRLYG 113
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y++ ILELNASDDRGI V+R+++K FA T F++ FK+VILDEAD MT A
Sbjct: 114 SAYKKHILELNASDDRGIDVVREQIKNFA-MTKVLFSKG------FKLVILDEADMMTQA 166
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRR +E+ TK+ RFC++CNYV+ I + SRC++FRF PL E + ++ + ++E
Sbjct: 167 AQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKE 226
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSC 242
V + L++ S GDMRRA+ LQ+C
Sbjct: 227 GVNLTEDGRDALLKLSRGDMRRALNVLQAC 256
>gi|195473665|ref|XP_002089113.1| GE18941 [Drosophila yakuba]
gi|194175214|gb|EDW88825.1| GE18941 [Drosophila yakuba]
Length = 332
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 126/286 (44%), Positives = 172/286 (60%), Gaps = 27/286 (9%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD+I +E++S + + +S LPH LFYGPPGTGKTST++A QL+
Sbjct: 11 MPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYS 70
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++ +LELNASDDRGI ++R ++ FA T + F C FK++ILDEAD+MT+
Sbjct: 71 PQQFKSMVLELNASDDRGIGIVRGQILNFAS-TRTIF------CDTFKLIILDEADAMTN 123
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T + RFC+ICNY+S II L SRC++FRF PL++N M+ RL+ I E
Sbjct: 124 DAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQNQMMPRLEKIIEA 183
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPKPWIEK 270
E+V L+ + GDMR+ + LQS VNED V G + IE+
Sbjct: 184 EAVQITDDGKRALLTLAKGDMRKVLNVLQSTVM---AFDTVNEDNVYMCVGYPLRQDIEQ 240
Query: 271 LLKV--------DSFQVLE--KYIEDLILEAYSATQLFDQFHDIVM 306
+LK DSF+ +E KY L LE + + H VM
Sbjct: 241 ILKALLSGNSLEDSFKTVESAKYARGLALE-----DIITELHLFVM 281
>gi|302843932|ref|XP_002953507.1| DNA replication factor C complex subunit 5 [Volvox carteri f.
nagariensis]
gi|300261266|gb|EFJ45480.1| DNA replication factor C complex subunit 5 [Volvox carteri f.
nagariensis]
Length = 356
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 109/229 (47%), Positives = 146/229 (63%), Gaps = 10/229 (4%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
APSS + T G + PWVEKYRPK++D+V ++++ +K+ + LPH L YG
Sbjct: 20 APSSR---LRTDGTVDGRNAPWVEKYRPKSLDEVAAHKQIIDTIKRLTNENRLPHLLLYG 76
Query: 74 PPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133
PPGTGKTST++A Q++G LELNASD+RGI V+R +++ FA N+
Sbjct: 77 PPGTGKTSTILAVARQIYGSSMANMTLELNASDERGISVVRQEIQDFASTRTIFSNK--- 133
Query: 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
FK++ILDE D+MT+ AQ ALRR +EK T++ RFCLICNYVS +I L SRC+KFRF
Sbjct: 134 ----FKLIILDECDAMTNDAQFALRRVIEKYTRNARFCLICNYVSKVIPALQSRCTKFRF 189
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
PL + RLQY+ E V AL+ +VE GDMRR++ LQSC
Sbjct: 190 APLDPQFVHERLQYVASTERVNLGSGALDAVVELGNGDMRRSLNILQSC 238
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 15/141 (10%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP--------WIEKL 372
AL+ +VE GDMRR++ LQSC +V++ + + P P W L
Sbjct: 216 ALDAVVELGNGDMRRSLNILQSC---HLAFDVVDQQAVYLCTGNPLPADISQVLTW---L 269
Query: 373 LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQ 432
L V EK + + + + + H +M +S+ K ++E++A+ RL
Sbjct: 270 LNEPVADVFEKVTQLQVDRGVALVDVVRELHPWIMK-TSMPVHAKIALVERMADVEHRLA 328
Query: 433 DGASEYIQILDLGSIVIKANK 453
SE +Q+ L + +KA +
Sbjct: 329 YSTSEKLQLGGLIAAFVKARE 349
>gi|58262374|ref|XP_568597.1| DNA replication factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|57230771|gb|AAW47080.1| DNA replication factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 373
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 116/268 (43%), Positives = 167/268 (62%), Gaps = 14/268 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DDV+ +++ S ++K + LPH L YGPPGTGKTST++A +L+G
Sbjct: 54 LPWVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYG 113
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR+ ILELNASDDRGI V+R+++K FA T F++ FK+VILDEAD MT A
Sbjct: 114 PAYRKHILELNASDDRGIDVVREQIKNFA-MTKVLFSKG------FKLVILDEADMMTQA 166
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRR +E+ TK+ RFC++CNYV+ I + SRC++FRF PL E + ++ + ++E
Sbjct: 167 AQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKE 226
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW-IEKL 271
V + +++ S GDMRRA+ LQ+C IV+E + P P IE++
Sbjct: 227 GVNLTDDGRDAILKLSRGDMRRALNVLQAC---HAAYDIVDETAVYNCTGNPHPRDIERV 283
Query: 272 LK---VDSFQVLEKYIEDLILEAYSATQ 296
++ D F I L +E A Q
Sbjct: 284 VQSMMADEFGTAYSLITSLKIEKGLALQ 311
>gi|352683023|ref|YP_004893547.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
gi|350275822|emb|CCC82469.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
Length = 328
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 106/232 (45%), Positives = 147/232 (63%), Gaps = 10/232 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPK+ ++++ +E+ + L + + ++PH LFYGPPGTGKT+T + +L+G+
Sbjct: 8 WFEKYRPKSFAEIVDLEEIKARLAEFIKAGNMPHLLFYGPPGTGKTTTALVLARELYGER 67
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ +G PFK+V+LDEAD+MT AQ
Sbjct: 68 WRENTLELNASDERGINVIRERVKEFARTAPAG-------GAPFKLVVLDEADNMTSDAQ 120
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME +TRF L+ NYVS II P+ SRC+ FRF P+ + M RLQYI QE +
Sbjct: 121 QALRRIMEMYAATTRFVLLANYVSRIIDPILSRCAVFRFPPMPKPLMAQRLQYIASQERI 180
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP 266
++ + E S GDMRRAI LQ A G+V+++ + KP
Sbjct: 181 KLTEDGIDAIYEISQGDMRRAINLLQMAA---ASAGVVDKESVAAVASAAKP 229
>gi|432116793|gb|ELK37418.1| Replication factor C subunit 5 [Myotis davidii]
Length = 341
Score = 224 bits (570), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 115/239 (48%), Positives = 157/239 (65%), Gaps = 12/239 (5%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
++ K RN +PWVEKYRP+T+ D+I Q+++S ++K +S LPH L YGPPGTGKTST+
Sbjct: 14 STSKIRN--LPWVEKYRPQTLSDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTI 71
Query: 84 IAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
+A QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VI
Sbjct: 72 LACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVI 124
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+
Sbjct: 125 LDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMV 184
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
RL+++ E+E V ++ L+ S GDMRRA+ LQS + + E V TG
Sbjct: 185 PRLEHVIEEEKVDVSEDGMKALITLSSGDMRRALNILQSTS--MAFSKVTEETVYTCTG 241
>gi|389585221|dbj|GAB67952.1| replication factor C3 [Plasmodium cynomolgi strain B]
Length = 344
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 163/259 (62%), Gaps = 11/259 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP ++D+I ++V+S ++K + +LPH L +GPPGTGKTST++A C +L+G+
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIQKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGE 73
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+LELNASDDRGI V+RD++KTFA ++ + +N K K++ILDEAD MT+ A
Sbjct: 74 SRSSFVLELNASDDRGISVVRDQIKTFA-ESKNHYNTCEK--TSLKLIILDEADHMTYPA 130
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q A+RR ME K+ RFCL+CNYV+ I + SRC+ FRF PL + M+ + I + E+
Sbjct: 131 QNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMINKALDIAKSEN 190
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK 273
V LE+L+ GDMRR + CLQ + L ++++V+ T IP P K
Sbjct: 191 VDLTKDGLESLIRVGRGDMRRILNCLQVVS-LSHKNMTIDQNVILSTLDIPLPEEVK--- 246
Query: 274 VDSFQVLEKYIEDLILEAY 292
+LE + + I E+Y
Sbjct: 247 ----DILEHFTKSTIKESY 261
>gi|6677723|ref|NP_031396.1| replication factor C subunit 5 isoform 1 [Homo sapiens]
gi|728777|sp|P40937.1|RFC5_HUMAN RecName: Full=Replication factor C subunit 5; AltName:
Full=Activator 1 36 kDa subunit; Short=A1 36 kDa
subunit; AltName: Full=Activator 1 subunit 5; AltName:
Full=Replication factor C 36 kDa subunit; Short=RF-C 36
kDa subunit; Short=RFC36
gi|1498257|gb|AAB09784.1| replication factor C, 36-kDa subunit [Homo sapiens]
gi|12804841|gb|AAH01866.1| Replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|15530326|gb|AAH13961.1| Replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|29124997|gb|AAO63493.1| replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|312151544|gb|ADQ32284.1| replication factor C (activator 1) 5, 36.5kDa [synthetic construct]
Length = 340
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 115/235 (48%), Positives = 156/235 (66%), Gaps = 10/235 (4%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + +PWVEKYRP+T++D+I Q+++S ++K ++ LPH L YGPPGTGKTST++A
Sbjct: 15 TKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACA 74
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ D + +LELNASDDRGI +IR + +FA T + F + FK+VILDEA
Sbjct: 75 KQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFAS-TRTIFKKG------FKLVILDEA 127
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+
Sbjct: 128 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 187
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
++ E+E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 188 HVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG 240
>gi|154341867|ref|XP_001566885.1| putative replication factor C, subunit 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064210|emb|CAM40408.1| putative replication factor C, subunit 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 296
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 111/243 (45%), Positives = 158/243 (65%), Gaps = 12/243 (4%)
Query: 66 LPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQT 124
+PHFLF+GPPGTGKT++++A H+LFG D R R+ ELNASDDRGI V+R+KVK FAQ
Sbjct: 1 MPHFLFHGPPGTGKTTSILAVAHELFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGA 60
Query: 125 ASG-----FNQDGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYV 177
S DGK P PPFK++ILDEAD++ AQ ALRR ME + TRFC++CNYV
Sbjct: 61 VSSNGSSVTQSDGKVYPVPPFKLIILDEADALLPDAQGALRRMMEDFSDVTRFCILCNYV 120
Query: 178 SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAIT 237
S II P+ SRC+K+RFKPL ++ + R++Y+ + E + +L+ L SGGD+R AI
Sbjct: 121 SRIIDPIASRCAKYRFKPLVKSALYHRIEYVAQAEGITLSPASLQALDTVSGGDLRLAIM 180
Query: 238 CLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKVDSFQVLEKYIE---DLILEAYSA 294
LQS + G + + ED + V+G +P +++ + LE+ I+ L+ E ++A
Sbjct: 181 HLQSAQKANGND-LTKEDFISVSGSVPADVMQRYISALFSHRLEEVIQASRRLVAEGFAA 239
Query: 295 TQL 297
Q+
Sbjct: 240 AQV 242
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 74/132 (56%), Gaps = 5/132 (3%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQV 380
+L+ L SGGD+R AI LQS + G + + ED + V+G +P +++ +
Sbjct: 163 SLQALDTVSGGDLRLAIMHLQSAQKANGND-LTKEDFISVSGSVPADVMQRYISALFSHR 221
Query: 381 LEKYIE---DLILEAYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNARLQDGAS 436
LE+ I+ L+ E ++A Q+ Q ++SA L+ Q+ I+ KL + RL DG
Sbjct: 222 LEEVIQASRRLVAEGFAAAQVLLQLQSYLLSAECPLNSAQRGKIMLKLCQTERRLADGGD 281
Query: 437 EYIQILDLGSIV 448
+Y+Q+LD+GS+V
Sbjct: 282 DYLQLLDIGSVV 293
>gi|255082558|ref|XP_002504265.1| predicted protein [Micromonas sp. RCC299]
gi|226519533|gb|ACO65523.1| predicted protein [Micromonas sp. RCC299]
Length = 355
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 153/256 (59%), Gaps = 7/256 (2%)
Query: 11 GKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFL 70
G DAP K S + + + WVEKYRP + DV ++++ + + S LP+ L
Sbjct: 10 GGDAPQRQKASAVDANDAKKNQM-WVEKYRPSKLSDVAAHKDIIDTIGRLTSQDRLPYLL 68
Query: 71 FYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ 130
YGPPGTGKTST++A +L+G + + LELNASDDRGI V+R+++ FA G N
Sbjct: 69 LYGPPGTGKTSTILAVAKELYGPQFSQMTLELNASDDRGIDVVRNEISAFASTMRFGSNA 128
Query: 131 DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190
FK++ILDE DSMT AQ ALRR +EK TK TRFCLI NYVS +I L SRC++
Sbjct: 129 G------FKLIILDECDSMTKDAQFALRRIIEKYTKHTRFCLIGNYVSKVIPALQSRCTR 182
Query: 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG 250
FRF PL N + R+Q++ QE++ A++ + GDMRR + LQS K G+G
Sbjct: 183 FRFSPLGPNAVKDRVQFVVRQENLQITDDAIDAVTRLGAGDMRRTLNILQSSFLSKEGDG 242
Query: 251 IVNEDVLEVTGVIPKP 266
++ + + T P+P
Sbjct: 243 PIDANSVYATTGQPRP 258
>gi|299116532|emb|CBN74720.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 382
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 109/233 (46%), Positives = 155/233 (66%), Gaps = 9/233 (3%)
Query: 11 GKDAPSSSKTSVS--TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH 68
G P++S +V+ +T + +PWVEKYRP ++++++ +++V +L+K ++ LPH
Sbjct: 39 GAPGPTTSAAAVARLAHRETARQTLPWVEKYRPSSLEELVAHEDIVGILQKLIASNKLPH 98
Query: 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF 128
LFYGPPGTGKTST++A +L+G ++ +LELNASDDRGI V+R ++K FA T F
Sbjct: 99 LLFYGPPGTGKTSTILACAKKLYGADFKMMVLELNASDDRGIDVVRGQIKEFA-GTKRLF 157
Query: 129 NQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRC 188
+ K+VILDEAD+MT+ AQ ALRR +EK TK TRFC+ICNYV+ II L SRC
Sbjct: 158 SSG------VKLVILDEADAMTNDAQFALRRVIEKYTKHTRFCMICNYVNKIIPALQSRC 211
Query: 189 SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
+KFRF PL + RLQ++ +QE V +E ++ GDMRR + LQS
Sbjct: 212 TKFRFAPLKPEQIQGRLQHVVDQEKVTITPDGVEAVMRLGQGDMRRVLNLLQS 264
>gi|158254806|dbj|BAF83374.1| unnamed protein product [Homo sapiens]
Length = 340
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 115/235 (48%), Positives = 156/235 (66%), Gaps = 10/235 (4%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + +PWVEKYRP+T++D+I Q+++S ++K ++ LPH L YGPPGTGKTST++A
Sbjct: 15 TKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACA 74
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ D + +LELNASDDRGI +IR + +FA T + F + FK+VILDEA
Sbjct: 75 KQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFAS-TRTIFKKG------FKLVILDEA 127
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+
Sbjct: 128 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 187
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
++ E+E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 188 HVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG 240
>gi|302687482|ref|XP_003033421.1| hypothetical protein SCHCODRAFT_54371 [Schizophyllum commune H4-8]
gi|300107115|gb|EFI98518.1| hypothetical protein SCHCODRAFT_54371 [Schizophyllum commune H4-8]
Length = 343
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 114/252 (45%), Positives = 157/252 (62%), Gaps = 15/252 (5%)
Query: 20 TSVSTSGKTRNKP-----VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGP 74
T+ GK + P +PWVEKYRP T+DDV+ +++ + + K + LPH LFYGP
Sbjct: 8 TAAKGKGKAADHPYDDDSLPWVEKYRPVTLDDVVSHKDITTTIDKFIEKNRLPHLLFYGP 67
Query: 75 PGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134
PGTGKTST++A +++G YR++ILELNASDDRGI V+R+++K FA +T + F++
Sbjct: 68 PGTGKTSTILAVARRIYGPEYRKQILELNASDDRGIDVVREQIKQFA-ETRTLFSKG--- 123
Query: 135 CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
FK+VILDEAD MT AAQAALRR +E+ T++ RFC+ICNYV I + SRC++FRF
Sbjct: 124 ---FKLVILDEADMMTQAAQAALRRVIEQYTRNVRFCIICNYVGKIAPAIQSRCTRFRFS 180
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 254
PL + R+ + E E V L+ + GDMRR + LQ+C E I
Sbjct: 181 PLPIKEVERRVDLVIEAEGVTITPDGKAALLRLARGDMRRVLNVLQAC--YAAYEKITEN 238
Query: 255 DVLEVTGVIPKP 266
+V TG P P
Sbjct: 239 EVYACTGA-PHP 249
>gi|332164786|ref|NP_001193730.1| replication factor C subunit 5 isoform 4 [Homo sapiens]
gi|208967278|dbj|BAG73653.1| replication factor C [synthetic construct]
Length = 337
Score = 224 bits (570), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 115/235 (48%), Positives = 156/235 (66%), Gaps = 10/235 (4%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + +PWVEKYRP+T++D+I Q+++S ++K ++ LPH L YGPPGTGKTST++A
Sbjct: 15 TKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACA 74
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ D + +LELNASDDRGI +IR + +FA T + F + FK+VILDEA
Sbjct: 75 KQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFAS-TRTIFKKG------FKLVILDEA 127
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+
Sbjct: 128 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 187
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
++ E+E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 188 HVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG 240
>gi|74211816|dbj|BAE29258.1| unnamed protein product [Mus musculus]
Length = 339
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 117/249 (46%), Positives = 161/249 (64%), Gaps = 15/249 (6%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
APS + + + R + +PWVEKYRP+T+ D+I Q+++S ++K +S LPH L YG
Sbjct: 5 APSQQRPAAA-----RARNLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYG 59
Query: 74 PPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
PPGTGKTST++A QL+ D + +LELNASDDRGI ++R + +FA T + F +
Sbjct: 60 PPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG- 117
Query: 133 KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
FK+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FR
Sbjct: 118 -----FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFR 172
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
F PL M+ RL+++ ++E+V ++ LV S GDMRRA+ LQS G +
Sbjct: 173 FGPLTPELMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVT 230
Query: 253 NEDVLEVTG 261
E V TG
Sbjct: 231 EETVYTCTG 239
>gi|62087564|dbj|BAD92229.1| replication factor C 5 isoform 1 variant [Homo sapiens]
Length = 351
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/235 (48%), Positives = 156/235 (66%), Gaps = 10/235 (4%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + +PWVEKYRP+T++D+I Q+++S ++K ++ LPH L YGPPGTGKTST++A
Sbjct: 29 TKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACA 88
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ D + +LELNASDDRGI +IR + +FA T + F + FK+VILDEA
Sbjct: 89 KQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFAS-TRTIFKKG------FKLVILDEA 141
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+
Sbjct: 142 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 201
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
++ E+E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 202 HVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG 254
>gi|328774020|gb|EGF84057.1| hypothetical protein BATDEDRAFT_84775 [Batrachochytrium
dendrobatidis JAM81]
Length = 358
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 144/209 (68%), Gaps = 7/209 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +D++I ++++S + + + LPH LFYGPPGTGKTST++A +L+G
Sbjct: 36 LPWVEKYRPSRLDELISHKDIISTIVRFIDENKLPHMLFYGPPGTGKTSTILACARKLYG 95
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D +R ILELNASDDRGI V+R+++K FA T F+ FK++ILDEAD+MT A
Sbjct: 96 DKFRSMILELNASDDRGIDVVREQIKNFA-STRKLFSSG------FKLIILDEADAMTQA 148
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +E+ TK+ RFCLICNYV II L SRC++FRF PL E + R+ +I QE
Sbjct: 149 AQNALRRVIEQYTKNVRFCLICNYVGKIIPALQSRCTRFRFAPLEEAQISDRITHIINQE 208
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQS 241
+ + +++ S GDMRRA+ LQ+
Sbjct: 209 GINITQAGRQAVLKLSQGDMRRALNILQA 237
>gi|351711981|gb|EHB14900.1| Replication factor C subunit 4 [Heterocephalus glaber]
Length = 293
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 113/182 (62%), Positives = 136/182 (74%), Gaps = 8/182 (4%)
Query: 1 MEAFLRTGKLGKDAPSSSKT-----SVSTSGKTRN-KPVPWVEKYRPKTIDDVIEQQEVV 54
M+AFL+ G L P S+K + +SG+ + KPVPWVEKY PK +D+V Q+ VV
Sbjct: 1 MQAFLK-GTLISTKPLSTKNQDVAATAGSSGENKKVKPVPWVEKYCPKCVDEVAFQEVVV 59
Query: 55 SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVI 113
+VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+ ELNASD+RGIQV+
Sbjct: 60 AVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRSRVFELNASDERGIQVV 119
Query: 114 RDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLI 173
R+KVK FAQ SG DGKPCP FK VILDEADSMT AQ ALR TMEKE K+TRF LI
Sbjct: 120 REKVKKFAQLAISGSRSDGKPCPSFKTVILDEADSMTSVAQVALRHTMEKELKTTRFYLI 179
Query: 174 CN 175
CN
Sbjct: 180 CN 181
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 48/68 (70%)
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
SF LE +++LI E ++ATQL +Q HD ++ +LSDKQK+++ +KL E + L DGA
Sbjct: 214 SFDKLEAVVKNLISEGHAATQLVNQLHDAIVENDNLSDKQKSIMTQKLVEADKCLADGAD 273
Query: 437 EYIQILDL 444
E++Q++ L
Sbjct: 274 EHLQLISL 281
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 276 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALF 319
SF LE +++LI E ++ATQL +Q HD ++ +LSDKQK++
Sbjct: 214 SFDKLEAVVKNLISEGHAATQLVNQLHDAIVENDNLSDKQKSIM 257
>gi|110625924|ref|NP_082404.1| replication factor C subunit 5 [Mus musculus]
gi|30913281|sp|Q9D0F6.1|RFC5_MOUSE RecName: Full=Replication factor C subunit 5; AltName:
Full=Activator 1 36 kDa subunit; Short=A1 36 kDa
subunit; AltName: Full=Activator 1 subunit 5; AltName:
Full=Replication factor C 36 kDa subunit; Short=RF-C 36
kDa subunit; Short=RFC36
gi|12847646|dbj|BAB27652.1| unnamed protein product [Mus musculus]
gi|57242935|gb|AAH89001.1| Replication factor C (activator 1) 5 [Mus musculus]
gi|74206797|dbj|BAE41638.1| unnamed protein product [Mus musculus]
gi|148687857|gb|EDL19804.1| mCG8761 [Mus musculus]
Length = 339
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 117/249 (46%), Positives = 161/249 (64%), Gaps = 15/249 (6%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
APS + + + R + +PWVEKYRP+T+ D+I Q+++S ++K +S LPH L YG
Sbjct: 5 APSQQRPAAA-----RARNLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYG 59
Query: 74 PPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
PPGTGKTST++A QL+ D + +LELNASDDRGI ++R + +FA T + F +
Sbjct: 60 PPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG- 117
Query: 133 KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
FK+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FR
Sbjct: 118 -----FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFR 172
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
F PL M+ RL+++ ++E+V ++ LV S GDMRRA+ LQS G +
Sbjct: 173 FGPLTPELMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVT 230
Query: 253 NEDVLEVTG 261
E V TG
Sbjct: 231 EETVYTCTG 239
>gi|320163538|gb|EFW40437.1| replication factor C 5 [Capsaspora owczarzaki ATCC 30864]
Length = 348
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 107/234 (45%), Positives = 154/234 (65%), Gaps = 12/234 (5%)
Query: 13 DAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFY 72
+ P+ ++ S + NK +PWVEKYRP ++D++I ++++S + + ++ +PH LFY
Sbjct: 9 ETPAVAEPSRVRGAASTNKNLPWVEKYRPSSLDELISHKDIISTIDRFITEDRVPHLLFY 68
Query: 73 GPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQ---TASGFN 129
GPPGTGKTST++A +++G+ + +LELNASDDRGI V+R+++K FA T+SG
Sbjct: 69 GPPGTGKTSTILACAKKMYGNRMQSMVLELNASDDRGIGVVREQIKEFASTRTITSSGGT 128
Query: 130 QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189
K+VILDEAD+MT AQAALRR +EK T++TRFCLICNYVS I + SRC+
Sbjct: 129 ---------KLVILDEADAMTSDAQAALRRVIEKYTRNTRFCLICNYVSKITPAIQSRCT 179
Query: 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
+FRF PL+ ML RL ++ E E V L+ + GDMR+ + LQS A
Sbjct: 180 RFRFAPLSSEQMLDRLNFVIESERVNVTDDGKAALMRLAQGDMRKVLNILQSTA 233
>gi|229366198|gb|ACQ58079.1| Replication factor C subunit 5 [Anoplopoma fimbria]
Length = 335
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 111/228 (48%), Positives = 156/228 (68%), Gaps = 11/228 (4%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
+ +PWVEKYRP+ +DD+I ++++S ++K +S LPH LFYGPPGTG+TST++A QL
Sbjct: 12 RNLPWVEKYRPQKLDDLISHKDILSTIQKFISEDKLPHLLFYGPPGTGETSTILACAKQL 71
Query: 91 FGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
+ + + +LELNASDDRGI V+R V +FA T + F + FK+VILDEAD M
Sbjct: 72 YKEKEFTSMVLELNASDDRGIDVVRGPVLSFAS-TRTIFKRG------FKLVILDEADHM 124
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ ALRR +EK T++TR CLICNY+S II L SRC++FRF PL+ + M+ RL+Y+
Sbjct: 125 TQDAQNALRRVIEKYTENTRLCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRLEYVV 184
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
+QES+ + ++ +V S GDMRR++ LQS + G V ED +
Sbjct: 185 QQESIDINPGGMKAIVTLSSGDMRRSLNILQSTSM---AYGKVTEDTV 229
>gi|114647195|ref|XP_001156572.1| PREDICTED: replication factor C subunit 5 isoform 5 [Pan
troglodytes]
Length = 340
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 156/235 (66%), Gaps = 10/235 (4%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + +PWVEKYRP+T++D+I Q+++S ++K ++ LPH L YGPPGTGKTST++A
Sbjct: 15 TKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACA 74
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDEA
Sbjct: 75 KQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEA 127
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+
Sbjct: 128 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 187
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
++ E+E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 188 HVVEEEKVGISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG 240
>gi|449017476|dbj|BAM80878.1| replication factor C subunit 4 [Cyanidioschyzon merolae strain 10D]
Length = 359
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/262 (45%), Positives = 167/262 (63%), Gaps = 23/262 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSG----------ADLPHFLFYGPPGTGKTSTM 83
PWVEKYRP+ +DDV +Q E + LK+ L G A LPH LFYGPPGTGKT+T
Sbjct: 11 PWVEKYRPRRLDDVTQQHETIRALKQLLYGSGGSSLTEKVASLPHLLFYGPPGTGKTTTA 70
Query: 84 IAACHQLFGDM-----YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPF 138
+A C +LF ++ + R+LELNASD+RGI+V+R+K+K FAQ + + D + P F
Sbjct: 71 LALCRELFQNITNRETLQNRVLELNASDERGIRVVREKIKRFAQSSIEE-SVDAQ-VPGF 128
Query: 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAE 198
KIVILDEAD++T AQ ALRRT+E +++TRF LICNY+S +I PL SRC+KFRFK L +
Sbjct: 129 KIVILDEADAITADAQTALRRTIEVHSRTTRFVLICNYLSRVIPPLASRCAKFRFKALED 188
Query: 199 NTMLTRLQYICEQESV-MCDFKALETLVETSGGDMRRAITCLQSCA----RLKGGEGIVN 253
++ RL++I E + +A L + + GD+RRA+ LQSCA G + ++
Sbjct: 189 GAVIARLEHIARTEGMGPLPPEASRLLAKAAAGDLRRAVNLLQSCADWARSADGSQRVLE 248
Query: 254 -EDVLEVTGVIPKPWIEKLLKV 274
E V E ++P +E+ +
Sbjct: 249 PEMVSEAACMVPASVVERFYDI 270
>gi|159477557|ref|XP_001696875.1| DNA replication factor C complex subunit 5 [Chlamydomonas
reinhardtii]
gi|158274787|gb|EDP00567.1| DNA replication factor C complex subunit 5 [Chlamydomonas
reinhardtii]
Length = 356
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 107/221 (48%), Positives = 144/221 (65%), Gaps = 7/221 (3%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTS 81
+ T G + PWVEKYRPK +DDV +E++ +K+ LPH L YGPPGTGKTS
Sbjct: 25 LKTDGTVDGRDAPWVEKYRPKKLDDVAAHKEIIDTIKRLTVENRLPHLLLYGPPGTGKTS 84
Query: 82 TMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIV 141
T++A Q++G+ LELN+SD+RGI V+R +++ FA T S F+ FK++
Sbjct: 85 TILAVARQIYGNSLANMTLELNSSDERGIGVVRQEIQDFAS-TRSVFSNK------FKLI 137
Query: 142 ILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTM 201
ILDE D+MT AQAALRR +EK T++ RFCLICNYVS II L SRC+KFRF PL+ +
Sbjct: 138 ILDECDAMTQDAQAALRRVIEKYTRNARFCLICNYVSKIIPALQSRCTKFRFAPLSPQFV 197
Query: 202 LTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
RLQY+ + E + L+ +V+ GDMRR++ LQSC
Sbjct: 198 RERLQYVADIEKMKLGPGGLDAVVQLGSGDMRRSLNILQSC 238
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 13/140 (9%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW---IEKLLK-VDS 377
L+ +V+ GDMRR++ LQSC + + V TG NP IE++L + +
Sbjct: 217 LDAVVQLGSGDMRRSLNILQSCH--MAFDTVDQSAVYTCTG---NPLPADIERVLTWLLN 271
Query: 378 FQVLEKYIEDLILEAYSATQLFD---QFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
+V E + L L+ L D + H VM A S+ K ++E+LA+ RL
Sbjct: 272 DRVAEVFANILKLQVDKGIALVDIVRELHPFVM-ALSIPVPAKVALVERLADVEHRLAFS 330
Query: 435 ASEYIQILDLGSIVIKANKT 454
SE +Q+ L + ++A +T
Sbjct: 331 TSEKLQLGALVAAFVRARET 350
>gi|302348723|ref|YP_003816361.1| Replication factor C small subunit [Acidilobus saccharovorans
345-15]
gi|302329135|gb|ADL19330.1| Replication factor C small subunit [Acidilobus saccharovorans
345-15]
Length = 329
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 118/246 (47%), Positives = 160/246 (65%), Gaps = 16/246 (6%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP+++ +++ Q+E+V L K ++ ++PH LF GPPGTGKT+ A H L+GD
Sbjct: 10 WTEKYRPRSLKEIVNQKEIVERLSKFVAEKNMPHLLFAGPPGTGKTTAAHALAHDLYGDN 69
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
Y + +LELNASD+RGI IR+KVK FA+ P PFKIV+LDEAD+MT AQ
Sbjct: 70 YTQYMLELNASDERGIDTIREKVKEFARSKTP-------PDIPFKIVLLDEADNMTADAQ 122
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME + +TRF L N+ S II P+ SRC+ FRF PL ++ ++ RL+YI E+E+V
Sbjct: 123 QALRRLMELYSANTRFILAANFPSKIIDPIQSRCAFFRFTPLGKDDVVGRLRYIAEKENV 182
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVI-PK---PWIE 269
D ALE + + S GDMR+AI LQ+ A L G V+ D V +V G+ PK +E
Sbjct: 183 KYDEDALEAIYDISEGDMRKAINILQTAASL----GKVDVDSVYKVVGMARPKDIREMVE 238
Query: 270 KLLKVD 275
+ LK D
Sbjct: 239 EALKGD 244
Score = 40.0 bits (92), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 12/147 (8%)
Query: 303 DIVMLASSLSDKQKALFK--ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLE 359
D+V +++K+ + ALE + + S GDMR+AI LQ+ A L G V+ D V +
Sbjct: 168 DVVGRLRYIAEKENVKYDEDALEAIYDISEGDMRKAINILQTAASL----GKVDVDSVYK 223
Query: 360 VTGVIP----NPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-SLSD 414
V G+ +E+ LK D E + +I S + Q H + S + +
Sbjct: 224 VVGMARPKDIREMVEEALKGDFTGARELLRKVMIEYGLSGEDVVRQIHRELFSNDLKIPE 283
Query: 415 KQKALILEKLAECNARLQDGASEYIQI 441
+ + +I + L E + R+ +G+ + IQ+
Sbjct: 284 ELRVMIADYLGEIHYRIVEGSDDDIQL 310
>gi|348584882|ref|XP_003478201.1| PREDICTED: replication factor C subunit 5-like isoform 1 [Cavia
porcellus]
Length = 340
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 116/238 (48%), Positives = 157/238 (65%), Gaps = 12/238 (5%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
+ K RN +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++
Sbjct: 14 AAKIRN--LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTIL 71
Query: 85 AACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VIL
Sbjct: 72 ACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVIL 124
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+
Sbjct: 125 DEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVP 184
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
RL+++ ++E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 185 RLEHVVKEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG 240
>gi|351694763|gb|EHA97681.1| Replication factor C subunit 5 [Heterocephalus glaber]
Length = 340
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 116/238 (48%), Positives = 157/238 (65%), Gaps = 12/238 (5%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
+ K RN +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++
Sbjct: 14 TAKIRN--LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTIL 71
Query: 85 AACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VIL
Sbjct: 72 ACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVIL 124
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+
Sbjct: 125 DEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVP 184
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
RL+++ ++E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 185 RLEHVIKEEKVDVSEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG 240
>gi|348584884|ref|XP_003478202.1| PREDICTED: replication factor C subunit 5-like isoform 2 [Cavia
porcellus]
Length = 337
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 116/238 (48%), Positives = 157/238 (65%), Gaps = 12/238 (5%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
+ K RN +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++
Sbjct: 14 AAKIRN--LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTIL 71
Query: 85 AACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VIL
Sbjct: 72 ACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVIL 124
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+
Sbjct: 125 DEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVP 184
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
RL+++ ++E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 185 RLEHVVKEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG 240
>gi|397524983|ref|XP_003832459.1| PREDICTED: replication factor C subunit 5 [Pan paniscus]
Length = 340
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 156/235 (66%), Gaps = 10/235 (4%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + +PWVEKYRP+T++D+I Q+++S ++K ++ LPH L YGPPGTGKTST++A
Sbjct: 15 TKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACA 74
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDEA
Sbjct: 75 KQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEA 127
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+
Sbjct: 128 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 187
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
++ E+E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 188 HVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG 240
>gi|448579007|ref|ZP_21644323.1| replication factor C small subunit [Haloferax larsenii JCM 13917]
gi|445724360|gb|ELZ75993.1| replication factor C small subunit [Haloferax larsenii JCM 13917]
Length = 329
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/272 (42%), Positives = 165/272 (60%), Gaps = 14/272 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DDV Q+E+V L+ + DLPH LF GP G GKT++ A ++GD
Sbjct: 19 WIEKYRPQTLDDVYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 78
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD RGI V+RD++K FA+ + G + ++I+ LDEADS+T+ AQ
Sbjct: 79 WRGNFLELNASDQRGIDVVRDRIKNFARSSFGGHD--------YRIIFLDEADSLTNDAQ 130
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL ++ + + + I E +
Sbjct: 131 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAAAEGI 190
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK- 273
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++
Sbjct: 191 ELTEDGLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYMITSTARPEDIEQMVRD 248
Query: 274 -VDS-FQVLEKYIEDLILE-AYSATQLFDQFH 302
+D F K +E LI++ + + DQ H
Sbjct: 249 AIDGEFTAARKQLETLIVDTGMAGGDIIDQLH 280
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 7/124 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDS- 377
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++ +D
Sbjct: 196 GLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYMITSTARPEDIEQMVRDAIDGE 253
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F K +E LI++ + + DQ H V L ++ ++E++ E + R+ +GA+
Sbjct: 254 FTAARKQLETLIVDTGMAGGDIIDQLHRSVWD-FDLDERAAVRLMERIGEADYRISEGAN 312
Query: 437 EYIQ 440
E +Q
Sbjct: 313 EQVQ 316
>gi|15988297|pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988298|pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988299|pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988300|pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988301|pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988302|pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 117/273 (42%), Positives = 162/273 (59%), Gaps = 13/273 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ +DD++ Q+ +V LK + +PH LF GPPG GKT+ +A +LFG+
Sbjct: 14 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGE 73
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD+RGI VIR+KVK FA+ G FKI+ LDEAD++T A
Sbjct: 74 NWRHNFLELNASDERGINVIREKVKEFARTKPIG-------GASFKIIFLDEADALTQDA 126
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTME + + RF L CNY S II+P+ SRC+ FRF+PL + + RL+YI E E
Sbjct: 127 QQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG 186
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL-- 271
+ + L+ ++ + GDMRRAI LQ+ A L + I +E+V V I ++
Sbjct: 187 LELTEEGLQAILYIAEGDMRRAINILQAAAAL--DKKITDENVFMVASRARPEDIREMML 244
Query: 272 --LKVDSFQVLEKYIEDLILEAYSATQLFDQFH 302
LK + + EK E L+ + S + Q H
Sbjct: 245 LALKGNFLKAREKLREILLKQGLSGEDVLVQMH 277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL----LKV 375
+ L+ ++ + GDMRRAI LQ+ A L + I +E+V V I ++ LK
Sbjct: 192 EGLQAILYIAEGDMRRAINILQAAAALD--KKITDENVFMVASRARPEDIREMMLLALKG 249
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
+ + EK E L+ + S + Q H V + + + +K L+ +K+ E N RL +GA
Sbjct: 250 NFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLP-IEEPKKVLLADKIGEYNFRLVEGA 308
Query: 436 SEYIQI 441
+E IQ+
Sbjct: 309 NEIIQL 314
>gi|410210156|gb|JAA02297.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410251550|gb|JAA13742.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410296138|gb|JAA26669.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410333015|gb|JAA35454.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
Length = 340
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 156/235 (66%), Gaps = 10/235 (4%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + +PWVEKYRP+T++D+I Q+++S ++K ++ LPH L YGPPGTGKTST++A
Sbjct: 15 TKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACA 74
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDEA
Sbjct: 75 KQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEA 127
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+
Sbjct: 128 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 187
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
++ E+E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 188 HVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG 240
>gi|307108040|gb|EFN56281.1| hypothetical protein CHLNCDRAFT_145161 [Chlorella variabilis]
Length = 328
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/283 (43%), Positives = 164/283 (57%), Gaps = 23/283 (8%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPW EKYRP+T+D + +++ ++K L LPH LFYGPPGTGKTST++A +++G
Sbjct: 8 VPWSEKYRPRTLDQISAHTDIIDTIRKLLDENQLPHLLFYGPPGTGKTSTILAIAREIYG 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
LELNASDDRGI V+R++++ FA N+ FK++ILDE D+MT
Sbjct: 68 SSLGNMTLELNASDDRGIAVVRNEIQDFASTRTIFSNK-------FKLIILDECDAMTKD 120
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR MEK T++ RFCLICNYVS II L SRC++FRF+PL + RL+YIC+QE
Sbjct: 121 AQFALRRVMEKYTRNARFCLICNYVSKIIPALQSRCTRFRFQPLPGEFVKGRLEYICQQE 180
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP------ 266
S+ LE L+E GDMRR + LQS + GE V D T P P
Sbjct: 181 SIKVTQGGLEALIELGCGDMRRTLNLLQSTV-MSAGE--VTGDSAYATAGKPLPQDIERC 237
Query: 267 --WIEKLLKVDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVM 306
W+ ++FQ ++ DL L+ + + Q H V
Sbjct: 238 AQWLLNEPLGEAFQ----HMLDLQLQKGVALVDILQQLHPFVF 276
>gi|448589356|ref|ZP_21649515.1| replication factor C small subunit [Haloferax elongans ATCC
BAA-1513]
gi|445735784|gb|ELZ87332.1| replication factor C small subunit [Haloferax elongans ATCC
BAA-1513]
Length = 329
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/272 (42%), Positives = 165/272 (60%), Gaps = 14/272 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DDV Q+E+V L+ + DLPH LF GP G GKT++ A ++GD
Sbjct: 19 WIEKYRPQTLDDVYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 78
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD RGI V+RD++K FA+ + G + ++I+ LDEADS+T+ AQ
Sbjct: 79 WRGNFLELNASDQRGIDVVRDRIKNFARSSFGGHD--------YRIIFLDEADSLTNDAQ 130
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL ++ + + + I + E +
Sbjct: 131 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAKAEGI 190
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK- 273
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE +++
Sbjct: 191 ELTEDGLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYMITSTARPEDIETMVRD 248
Query: 274 -VDS-FQVLEKYIEDLILE-AYSATQLFDQFH 302
+D F K +E LI++ + + DQ H
Sbjct: 249 AIDGEFTAARKQLETLIVDTGMAGGDIIDQLH 280
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDS- 377
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE +++ +D
Sbjct: 196 GLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYMITSTARPEDIETMVRDAIDGE 253
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F K +E LI++ + + DQ H V L ++ ++E++ E + R+ +GA+
Sbjct: 254 FTAARKQLETLIVDTGMAGGDIIDQLHRSVWD-FDLDERAAVRLMERIGEADYRISEGAN 312
Query: 437 EYIQ 440
E +Q
Sbjct: 313 EQVQ 316
>gi|119872170|ref|YP_930177.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
gi|150415670|sp|A1RSA2.1|RFCS1_PYRIL RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|119673578|gb|ABL87834.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
Length = 329
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 120/288 (41%), Positives = 170/288 (59%), Gaps = 16/288 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV S L++ + ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NYVS II P+ SRC+ FRF P+ + M RL+YI + E V
Sbjct: 119 QALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLKYIAKSEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW-IEKLLK 273
A++ + E S GDMR+AI LQ A IV+ +V+ +P I +L
Sbjct: 179 EVKEDAIDLIYELSEGDMRKAINILQVAA---ATNKIVDRNVVAAAAAAIRPTDIVELFN 235
Query: 274 V----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
+ D + EK E + ++ + F ++ SL D+ KA
Sbjct: 236 LALSGDYLKAREKMRELMYVKGVAGVDFIRAFQR-ELIRMSLDDETKA 282
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL--EVTGVIPNPWIEKL---LKV 375
A++ + E S GDMR+AI LQ A IV+ +V+ + P +E L
Sbjct: 184 AIDLIYELSEGDMRKAINILQVAA---ATNKIVDRNVVAAAAAAIRPTDIVELFNLALSG 240
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
D + EK E + ++ + F ++ SL D+ KA + E LA+ + RL GA
Sbjct: 241 DYLKAREKMRELMYVKGVAGVDFIRAFQRELIRM-SLDDETKAEVAELLADVDYRLTQGA 299
Query: 436 SEYIQ----ILDLGSI 447
E IQ + LGSI
Sbjct: 300 DEEIQLSYFLAKLGSI 315
>gi|337285093|ref|YP_004624567.1| Replication factor C, small subunit (rfcS) [Pyrococcus yayanosii
CH1]
gi|334901027|gb|AEH25295.1| Replication factor C, small subunit (rfcS) [Pyrococcus yayanosii
CH1]
Length = 326
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/273 (42%), Positives = 165/273 (60%), Gaps = 13/273 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ +DD++ Q+ ++ LK + +PH LF GPPGTGKT++ +A +LFG+
Sbjct: 14 PWVEKYRPQRLDDIVGQEHIIKRLKHYVKTGSMPHLLFAGPPGTGKTTSALALARELFGE 73
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD+RGI VIR+KVK FA+ G FKI+ LDEAD++T A
Sbjct: 74 NWRHNFLELNASDERGINVIREKVKEFARTKPIG-------GASFKIIFLDEADALTQDA 126
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTME + + RF L NY S II+P+ SRC+ FRF+PL++ + RL+YI EQE
Sbjct: 127 QQALRRTMEMFSNNVRFILSANYSSRIIEPIQSRCAIFRFRPLSDEDVAKRLKYIAEQEG 186
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL-- 271
+ + L+ ++ + GD+RRAI LQ+ A L + I +E+V V I ++
Sbjct: 187 LELTEEGLQAILYVAEGDLRRAINVLQAAAALD--KKITDENVFTVASRARPEDIREMML 244
Query: 272 --LKVDSFQVLEKYIEDLILEAYSATQLFDQFH 302
L+ + + EK E L+ + S + Q H
Sbjct: 245 LALEGNFLKAREKLREILLKQGLSGEDVLIQMH 277
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 7/126 (5%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL----LKV 375
+ L+ ++ + GD+RRAI LQ+ A L + I +E+V V I ++ L+
Sbjct: 192 EGLQAILYVAEGDLRRAINVLQAAAALD--KKITDENVFTVASRARPEDIREMMLLALEG 249
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
+ + EK E L+ + S + Q H V + +S+ +K + +K+ E N RL +GA
Sbjct: 250 NFLKAREKLREILLKQGLSGEDVLIQMHREVFNLP-ISEPKKVQLADKIGEYNFRLVEGA 308
Query: 436 SEYIQI 441
+E IQ+
Sbjct: 309 NEMIQL 314
>gi|443926001|gb|ELU44750.1| replication factor C [Rhizoctonia solani AG-1 IA]
Length = 1949
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/220 (51%), Positives = 148/220 (67%), Gaps = 24/220 (10%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG 127
LFYGPPGTGKTST++A QLFG +++R R+LELNASD+RGI ++R+K+K FA+QT
Sbjct: 1 MLFYGPPGTGKTSTILALSRQLFGPELFRTRVLELNASDERGISIVREKIKNFARQTPRA 60
Query: 128 FNQDGK-PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS-C------ 179
+ K PCPP+KI+ILDEADSMT AQAALRR ME K TRFCL+CNYV+ C
Sbjct: 61 AEANSKYPCPPYKIIILDEADSMTQDAQAALRRIMENYAKITRFCLVCNYVTRCVELNLT 120
Query: 180 -----------IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETS 228
II+PL SRCSKFRF PL ++ +RL++I + E++ +A+ L+ TS
Sbjct: 121 GLFPSKYLVNRIIEPLASRCSKFRFHPLDVSSTRSRLEHIVKLENIDISPEAVTALISTS 180
Query: 229 GGDMRRAITCLQSCARLKGGE----GIVNEDVLEVTGVIP 264
GD+RR+IT LQS ARL + I D+ E+ GV+P
Sbjct: 181 DGDLRRSITYLQSAARLSASQEPSPSISASDIQEIAGVVP 220
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 6/137 (4%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGE----GIVNEDVLEVTGVIPNPWIEKLLKV 375
+A+ L+ TS GD+RR+IT LQS ARL + I D+ E+ GV+P+ + +
Sbjct: 171 EAVTALISTSDGDLRRSITYLQSAARLSASQEPSPSISASDIQEIAGVVPDAVMNRFSSA 230
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSD-KQKALILEKLAECNARLQDG 434
++ ++ + D+ A + ++ + I+ S++ + A + L DG
Sbjct: 231 VGIELPDEGM-DIDRVAKDIDGIRNEVNRIMQEGFSVAQLLSQTACAAVFAAADKALCDG 289
Query: 435 ASEYIQILDLGSIVIKA 451
A E +Q+L++G V KA
Sbjct: 290 ADEELQLLEIGLGVWKA 306
>gi|18312778|ref|NP_559445.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
gi|42559510|sp|Q8ZWS2.1|RFCS2_PYRAE RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|18160261|gb|AAL63627.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
Length = 319
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 147/229 (64%), Gaps = 9/229 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV + L++ + ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NYVS II+P+ SR RF PL + + RL+YI E E V
Sbjct: 119 QALRRIMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAENEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
ALE + E + GDMRRAI LQ A + + + E V + G++
Sbjct: 179 KVSDDALEAIYEFTQGDMRRAINALQIAATV--SKAVTEEVVAKALGMV 225
>gi|379003246|ref|YP_005258918.1| DNA polymerase III subunit gamma and tau [Pyrobaculum oguniense
TE7]
gi|375158699|gb|AFA38311.1| DNA polymerase III, gamma/tau subunits [Pyrobaculum oguniense TE7]
Length = 322
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/244 (45%), Positives = 154/244 (63%), Gaps = 10/244 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV + L++ + ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NY+S II+P+ SR RF PL + + RL+YI + E V
Sbjct: 119 QALRRIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADNEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
ALE + E + GDMRRAI LQ A G+ I E V + G++ + + L
Sbjct: 179 KITDDALEAIYEFTQGDMRRAINALQIAA--TTGKEITEETVAKALGMVSPRLLRETLN- 235
Query: 275 DSFQ 278
D+F+
Sbjct: 236 DAFR 239
>gi|365982341|ref|XP_003668004.1| hypothetical protein NDAI_0A06060 [Naumovozyma dairenensis CBS 421]
gi|343766770|emb|CCD22761.1| hypothetical protein NDAI_0A06060 [Naumovozyma dairenensis CBS 421]
Length = 338
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 106/222 (47%), Positives = 148/222 (66%), Gaps = 7/222 (3%)
Query: 21 SVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKT 80
SV + N +PWVEKYRP+++DDV Q EVV+ ++K L LPH LFYGPPGTGKT
Sbjct: 2 SVPNNHGNTNDNLPWVEKYRPESLDDVYGQTEVVTTVRKFLEEGKLPHLLFYGPPGTGKT 61
Query: 81 STMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
ST++A ++FG Y +LELNASDDRGI+V+R+++K FA T F++ FK+
Sbjct: 62 STIVALAREIFGKNYSNMVLELNASDDRGIEVVRNQIKDFA-STRQIFSKG------FKL 114
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
+ILDEAD+MT+AAQ ALRR +EK TK+TRFC++ NY + L SRC++FRF+PL +
Sbjct: 115 IILDEADAMTNAAQNALRRIIEKYTKNTRFCILANYSHKLTPALLSRCTRFRFQPLPRDA 174
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ R+ + E++ A + L+ S GDMRR + LQ+
Sbjct: 175 IEKRISNVLIHENIKISDDAKDALITLSQGDMRRVLNVLQAS 216
>gi|50513623|pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/248 (45%), Positives = 164/248 (66%), Gaps = 10/248 (4%)
Query: 22 VSTSGKTRNKP-VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKT 80
+STS + R+K +PWVEKYRP+T+D+V Q EV++ ++K + LPH LFYGPPGTGKT
Sbjct: 1 MSTSTEKRSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKT 60
Query: 81 STMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
ST++A +++G Y +LELNASDDRGI V+R+++K FA T F++ FK+
Sbjct: 61 STIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKL 113
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
+ILDEAD+MT+AAQ ALRR +E+ TK+TRFC++ NY + L S+C++FRF+PL +
Sbjct: 114 IILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEA 173
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKG-GEGIVNEDVLE 258
+ R+ + E + A + L+E S GDMRR + LQSC A L E +++DV+
Sbjct: 174 IERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIY 233
Query: 259 VTGVIPKP 266
P+P
Sbjct: 234 ECCGAPRP 241
>gi|157821267|ref|NP_001100616.1| replication factor C subunit 5 [Rattus norvegicus]
gi|149063502|gb|EDM13825.1| replication factor C (activator 1) 5 (predicted) [Rattus
norvegicus]
gi|197245812|gb|AAI68902.1| Replication factor C (activator 1) 5 [Rattus norvegicus]
Length = 338
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/234 (48%), Positives = 155/234 (66%), Gaps = 10/234 (4%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
R + +PWVEKYRP+T+ D+I Q+++S ++K +S LPH L YGPPGTGKTST++A
Sbjct: 14 RARNLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAK 73
Query: 89 QLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDEAD
Sbjct: 74 QLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKRG------FKLVILDEAD 126
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL++
Sbjct: 127 AMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 186
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
+ ++E+V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 187 VVQEENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG 238
>gi|349580660|dbj|GAA25819.1| K7_Rfc3p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 340
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 113/248 (45%), Positives = 163/248 (65%), Gaps = 10/248 (4%)
Query: 22 VSTSGKTRNKP-VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKT 80
+S S + R+K +PWVEKYRP+T+D+V Q EV++ ++K + LPH LFYGPPGTGKT
Sbjct: 1 MSKSTEKRSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKT 60
Query: 81 STMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
ST++A +++G Y +LELNASDDRGI V+R+++K FA T F++ FK+
Sbjct: 61 STIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKL 113
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
+ILDEAD+MT+AAQ ALRR +E+ TK+TRFC++ NY + L SRC++FRF+PL +
Sbjct: 114 IILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEA 173
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKG-GEGIVNEDVLE 258
+ R+ + E + A + L+E S GDMRR + LQSC A L E +++DV+
Sbjct: 174 IERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIY 233
Query: 259 VTGVIPKP 266
P+P
Sbjct: 234 ECCGAPRP 241
>gi|240104119|ref|YP_002960428.1| Replication factor C, small subunit (rfcS) [Thermococcus
gammatolerans EJ3]
gi|239911673|gb|ACS34564.1| Replication factor C, small subunit (rfcS) [Thermococcus
gammatolerans EJ3]
Length = 333
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/227 (47%), Positives = 146/227 (64%), Gaps = 9/227 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ +DD++ Q+ +V LK +PH LF GPPGTGKTS +A +LFG+
Sbjct: 17 PWVEKYRPQRLDDIVGQEHIVKRLKHYAKTGSMPHLLFAGPPGTGKTSAALALARELFGE 76
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD+RGI VIR+KVK FA+ G FKI+ LDEAD++T A
Sbjct: 77 NWRHNFLELNASDERGINVIREKVKEFARTKPIG-------GASFKIIFLDEADALTQDA 129
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTME + + RF L CNY S II+P+ SRC+ FRF+PL + + R++YI EQE
Sbjct: 130 QQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLNDEDIAKRIRYIAEQEG 189
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVT 260
+ + L+ ++ + GD+RRAI LQ+ A L + I +E+V V
Sbjct: 190 LELTEEGLQAILYVAEGDLRRAINVLQAAAALD--KKITDENVFLVA 234
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---- 375
+ L+ ++ + GD+RRAI LQ+ A L + I +E+V V + +++ +
Sbjct: 195 EGLQAILYVAEGDLRRAINVLQAAAALD--KKITDENVFLVASRARPEDVREMMTLALEG 252
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
+ + +K + L+ + S + Q H V + DK+ AL +K+ E N RL +GA
Sbjct: 253 NFLKARDKLRDILLKQGLSGEDVLIQMHKEVFNLPIPEDKKVALA-DKIGEYNFRLVEGA 311
Query: 436 SEYIQI 441
+E IQ+
Sbjct: 312 NEMIQL 317
>gi|389745640|gb|EIM86821.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 358
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 101/215 (46%), Positives = 152/215 (70%), Gaps = 7/215 (3%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
++++ +PWVEKYRP ++DDV+ +++ S ++K + LPH LFYGPPGTGKTST++A
Sbjct: 32 SQDETLPWVEKYRPNSLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVA 91
Query: 88 HQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
+++G Y+++ LELNASDDRGI V+R+++K FA +T + F++ +K++ILDEAD
Sbjct: 92 RRIYGAGYKKQTLELNASDDRGIDVVREQIKQFA-ETRTLFSKG------YKLIILDEAD 144
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
MT AAQAALRR +E+ TK+ RFC+ICNYV+ I+ + SRC++FRF PL + R+ +
Sbjct: 145 MMTTAAQAALRRVIEQYTKNVRFCIICNYVNKIVPAIQSRCTRFRFSPLPMKEVEKRVDH 204
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E V + L++ S GDMRRA+ LQ+C
Sbjct: 205 VVAAEGVKLTEDGKKALLKLSKGDMRRALNILQAC 239
>gi|444723208|gb|ELW63869.1| Replication factor C subunit 5 [Tupaia chinensis]
Length = 341
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 116/236 (49%), Positives = 157/236 (66%), Gaps = 12/236 (5%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
KTRN +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++A
Sbjct: 17 KTRN--LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILAC 74
Query: 87 CHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDE
Sbjct: 75 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDE 127
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL
Sbjct: 128 ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRL 187
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
+++ +E+V ++ L+ S GDMRRA+ LQS G + E V TG
Sbjct: 188 EHVVGEENVDITEDGMKALITLSSGDMRRALNILQSTNMAFG--KVTEETVHTCTG 241
>gi|452819401|gb|EME26461.1| replication factor C subunit 3/5 [Galdieria sulphuraria]
Length = 330
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 143/210 (68%), Gaps = 13/210 (6%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRPKT +DV+ QQ+++ + + ++ LPH LFYGPPGTGKTST++A ++G
Sbjct: 10 WLEKYRPKTFNDVLSQQDIIVTILRFVNSNSLPHMLFYGPPGTGKTSTILACAEHMYGTN 69
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQT---ASGFNQDGKPCPPFKIVILDEADSMTH 151
++ +LELNASDDRGI V+R+++K F A+G K+VILDEAD+MT
Sbjct: 70 FKSMVLELNASDDRGIDVVRNEIKDFCSTQRIFATGV----------KLVILDEADAMTS 119
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AAQ ALRR MEK T STRFCLICNY + II L SRC++FRF PL E + RL I E+
Sbjct: 120 AAQMALRRIMEKYTSSTRFCLICNYANKIIPALQSRCTRFRFGPLKEEDIRLRLGQIAER 179
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQS 241
E V+ + ALET+++ S GDMR I LQS
Sbjct: 180 EGVVFEKDALETIIQLSQGDMRSCINILQS 209
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 303 DIVMLASSLSDKQKALFK--ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 360
DI + +++++ +F+ ALET+++ S GDMR I LQS L G+ + V E
Sbjct: 168 DIRLRLGQIAEREGVVFEKDALETIIQLSQGDMRSCINILQSTF-LSSGK-VTCSTVYEN 225
Query: 361 TGVIPNPWIEKLL----KVDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDK 415
TG N +E+++ + D F ++ + E ++ + Q H +++ ++S +
Sbjct: 226 TGNPSNEEMEQIMDWLNEEDDFSSCYDKVKKMKAERGFALIDILRQIHKRLLT-RNMSRR 284
Query: 416 QKALILEKLAECNARLQDGASEYIQILDL-GSIVI 449
KA +LEKLA+ + G SE + + L GS I
Sbjct: 285 AKAYLLEKLADIEHQFAFGGSELLNLCSLIGSFQI 319
>gi|19921076|ref|NP_609399.1| replication factor C subunit 3 [Drosophila melanogaster]
gi|195339815|ref|XP_002036512.1| GM18361 [Drosophila sechellia]
gi|195578201|ref|XP_002078954.1| GD23698 [Drosophila simulans]
gi|7533196|gb|AAF63387.1|AF247499_1 replication factor C subunit 3 [Drosophila melanogaster]
gi|21430740|gb|AAM51048.1| SD11293p [Drosophila melanogaster]
gi|22946159|gb|AAF52944.2| replication factor C subunit 3 [Drosophila melanogaster]
gi|194130392|gb|EDW52435.1| GM18361 [Drosophila sechellia]
gi|194190963|gb|EDX04539.1| GD23698 [Drosophila simulans]
gi|220950744|gb|ACL87915.1| RfC3-PA [synthetic construct]
gi|220959368|gb|ACL92227.1| RfC3-PA [synthetic construct]
Length = 332
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 125/286 (43%), Positives = 172/286 (60%), Gaps = 27/286 (9%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD+I +E++S + + +S LPH LFYGPPGTGKTST++A QL+
Sbjct: 11 MPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYS 70
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++ +LELNASDDRGI ++R ++ FA T + F C FK++ILDEAD+MT+
Sbjct: 71 PQQFKSMVLELNASDDRGIGIVRGQILNFAS-TRTIF------CDTFKLIILDEADAMTN 123
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T + RFC+ICNY+S II L SRC++FRF PL+++ M+ RL+ I E
Sbjct: 124 DAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEA 183
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPKPWIEK 270
E+V L+ + GDMR+ + LQS VNED V G + IE+
Sbjct: 184 EAVQITEDGKRALLTLAKGDMRKVLNVLQSTVM---AFDTVNEDNVYMCVGYPLRQDIEQ 240
Query: 271 LLKV--------DSFQVLE--KYIEDLILEAYSATQLFDQFHDIVM 306
+LK DSF+ +E KY L LE + + H VM
Sbjct: 241 ILKALLSGSSLEDSFKTVESAKYARGLALE-----DIITELHLFVM 281
>gi|50543016|ref|XP_499674.1| YALI0A02068p [Yarrowia lipolytica]
gi|49645539|emb|CAG83597.1| YALI0A02068p [Yarrowia lipolytica CLIB122]
Length = 358
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 106/213 (49%), Positives = 141/213 (66%), Gaps = 5/213 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV + VV+ LKK L+ PH LFYGPPGTGKTST++A +++G
Sbjct: 29 LPWVEKYRPDTLDDVTGHEGVVTTLKKLLANKKFPHLLFYGPPGTGKTSTILAVAREIYG 88
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPCPPFKIVILDEADSM 149
Y+ +LELNASDDRGI V+RD++K FA Q G ++ + FK+VILDEAD+M
Sbjct: 89 PSYKSMVLELNASDDRGIDVVRDQIKVFASSRQIFQRGGEENARSN--FKLVILDEADAM 146
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+ AQ ALRR +E+ T TRFC++ NY + L SRC++FRF PL E + R+ +
Sbjct: 147 TNVAQNALRRVIEQYTTHTRFCILANYTHKLNPALLSRCTRFRFSPLPEAAIDKRIMQVI 206
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E V A L+E S GDMRRA+ LQ+C
Sbjct: 207 DAEKVKIAPDAKAALLELSKGDMRRALNVLQAC 239
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 60/143 (41%), Gaps = 22/143 (15%)
Query: 312 SDKQKALFKALETLVETSGGDMRRAITCLQSCA---RLKGGEGIVNEDVLEVTGVIPNPW 368
++K K A L+E S GDMRRA+ LQ+C G + I V G P+P
Sbjct: 208 AEKVKIAPDAKAALLELSKGDMRRALNVLQACHTGLEHPGKDTITLSQVYLCVGS-PDP- 265
Query: 369 IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQ-----FHDIV------MSASSLSDKQK 417
D +L + D AY + DI+ + A +L +K K
Sbjct: 266 ------ADIDTILTSILNDDWTTAYDTVSTLKRERGLALVDILEKLSAELMALNLKEKTK 319
Query: 418 ALILEKLAECNARLQDGASEYIQ 440
+L KLA+ RL +G SE IQ
Sbjct: 320 IALLSKLADIEYRLANGGSEKIQ 342
>gi|452824858|gb|EME31858.1| replication factor C subunit [Galdieria sulphuraria]
Length = 330
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 143/210 (68%), Gaps = 13/210 (6%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRPKT +DV+ QQ+++ + + ++ LPH LFYGPPGTGKTST++A ++G
Sbjct: 10 WLEKYRPKTFNDVLSQQDIIVTILRFVNSNSLPHMLFYGPPGTGKTSTILACAEHMYGTN 69
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQT---ASGFNQDGKPCPPFKIVILDEADSMTH 151
++ +LELNASDDRGI V+R+++K F A+G K+VILDEAD+MT
Sbjct: 70 FKSMVLELNASDDRGIDVVRNEIKDFCSTQRIFATGV----------KLVILDEADAMTS 119
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AAQ ALRR MEK T STRFCLICNY + II L SRC++FRF PL E + RL I E+
Sbjct: 120 AAQMALRRIMEKYTTSTRFCLICNYANKIIPALQSRCTRFRFGPLKEEDIRLRLGQIAER 179
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQS 241
E V+ + ALET+++ S GDMR I LQS
Sbjct: 180 EGVVFEKDALETIIQLSQGDMRSCINILQS 209
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 11/155 (7%)
Query: 303 DIVMLASSLSDKQKALFK--ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 360
DI + +++++ +F+ ALET+++ S GDMR I LQS L G+ + V E
Sbjct: 168 DIRLRLGQIAEREGVVFEKDALETIIQLSQGDMRSCINILQSTF-LSSGK-VTCSTVYEN 225
Query: 361 TGVIPNPWIEKLL----KVDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDK 415
TG N +E+++ + D F ++ + E ++ + Q H +++ ++S +
Sbjct: 226 TGNPSNEEMEQIMDWLNEEDDFSSCYDKVKKMKAERGFALIDILRQIHKRLLT-RNMSRR 284
Query: 416 QKALILEKLAECNARLQDGASEYIQILDL-GSIVI 449
KA +LEKLA+ + G SE + + L GS I
Sbjct: 285 AKAYLLEKLADIEHQFAFGGSELLNLCSLIGSFQI 319
>gi|212224565|ref|YP_002307801.1| DNA replication ATPase [Thermococcus onnurineus NA1]
gi|212009522|gb|ACJ16904.1| ATPase involved in DNA replication [Thermococcus onnurineus NA1]
Length = 326
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 117/289 (40%), Positives = 168/289 (58%), Gaps = 13/289 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ ++D++ Q+ +V LK + +PH LF GPPG GKT+ +A +LFG+
Sbjct: 14 PWVEKYRPQRLEDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGE 73
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD+RGI VIR+KVK FA+ G FKI+ LDEAD++T A
Sbjct: 74 HWRHNFLELNASDERGINVIREKVKEFARTKPIG-------GASFKIIFLDEADALTQDA 126
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTME + + RF L CNY S II+P+ SRC+ FRF+PL +N + R++YI E E
Sbjct: 127 QQALRRTMEMFSTNVRFILSCNYSSKIIEPIQSRCAIFRFRPLNDNDIAKRIKYIAENEG 186
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK 273
+ L+ L+ + GD+RRAI LQ+ A L I +E+V V + +++
Sbjct: 187 LELTEDGLQALLYVAEGDLRRAINVLQAAAALD--RKITDENVFLVASRARPEDVREMMN 244
Query: 274 V----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKAL 318
+ + + EK E L+ + S + Q H V + D++ AL
Sbjct: 245 LALEGNFLKAREKLREILLKQGLSGEDVLIQMHKEVFNLTIPEDRKVAL 293
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 7/125 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV----D 376
L+ L+ + GD+RRAI LQ+ A L I +E+V V + +++ + +
Sbjct: 193 GLQALLYVAEGDLRRAINVLQAAAALD--RKITDENVFLVASRARPEDVREMMNLALEGN 250
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+ EK E L+ + S + Q H V + + D++ AL +K+ E N RL +GA+
Sbjct: 251 FLKAREKLREILLKQGLSGEDVLIQMHKEVFNLTIPEDRKVALA-DKIGEYNFRLVEGAN 309
Query: 437 EYIQI 441
E IQ+
Sbjct: 310 EMIQL 314
>gi|194859928|ref|XP_001969482.1| GG10129 [Drosophila erecta]
gi|190661349|gb|EDV58541.1| GG10129 [Drosophila erecta]
Length = 332
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 125/286 (43%), Positives = 172/286 (60%), Gaps = 27/286 (9%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD+I +E++S + + +S LPH LFYGPPGTGKTST++A QL+
Sbjct: 11 MPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYS 70
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++ +LELNASDDRGI ++R ++ FA T + F C FK++ILDEAD+MT+
Sbjct: 71 PQQFKSMVLELNASDDRGIGIVRGQILNFAS-TRTIF------CDTFKLIILDEADAMTN 123
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T + RFC+ICNY+S II L SRC++FRF PL+++ M+ RL+ I E
Sbjct: 124 DAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEA 183
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPKPWIEK 270
E+V L+ + GDMR+ + LQS VNED V G + IE+
Sbjct: 184 EAVQITDDGKRALLTLAKGDMRKVLNVLQSTVM---AFDTVNEDNVYMCVGYPLRQDIEQ 240
Query: 271 LLKV--------DSFQVLE--KYIEDLILEAYSATQLFDQFHDIVM 306
+LK DSF+ +E KY L LE + + H VM
Sbjct: 241 ILKALLSGNSLEDSFKTVESAKYARGLALE-----DIITELHLFVM 281
>gi|448606584|ref|ZP_21659010.1| replication factor C small subunit [Haloferax sulfurifontis ATCC
BAA-897]
gi|445738792|gb|ELZ90304.1| replication factor C small subunit [Haloferax sulfurifontis ATCC
BAA-897]
Length = 327
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 113/272 (41%), Positives = 165/272 (60%), Gaps = 14/272 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T DDV Q ++V L+ + DLPH LF GP G GKT++ A ++GD
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD+RGI V+RD++K FA+ + G + ++++ LDEADS+T+ AQ
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARSSFGGHD--------YRVIFLDEADSLTNDAQ 128
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL ++ + +++ I E +
Sbjct: 129 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEGI 188
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK- 273
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++
Sbjct: 189 EVTEDGLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYMITSTARPEDIERMVRN 246
Query: 274 -VDS-FQVLEKYIEDLILE-AYSATQLFDQFH 302
+D F K +E LI++ + + DQ H
Sbjct: 247 AIDGEFTAARKQLETLIVDTGMAGGDIIDQLH 278
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDS- 377
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++ +D
Sbjct: 194 GLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYMITSTARPEDIERMVRNAIDGE 251
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F K +E LI++ + + DQ H V L +++ ++E++ E + R+ +GA+
Sbjct: 252 FTAARKQLETLIVDTGMAGGDIIDQLHRSVWE-FDLDEREAVRLMERIGEADYRISEGAN 310
Query: 437 EYIQ 440
E +Q
Sbjct: 311 EQVQ 314
>gi|395744928|ref|XP_002823879.2| PREDICTED: replication factor C subunit 5 isoform 3 [Pongo abelii]
Length = 340
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 155/235 (65%), Gaps = 10/235 (4%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + +PWVEKYRP+T++D+I Q+++S ++K + LPH L YGPPGTGKTST++A
Sbjct: 15 TKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFIIEDRLPHLLLYGPPGTGKTSTILACA 74
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDEA
Sbjct: 75 KQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEA 127
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+
Sbjct: 128 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 187
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
++ E+E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 188 HVVEEEKVDVSEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG 240
>gi|124810138|ref|XP_001348775.1| replication factor C3 [Plasmodium falciparum 3D7]
gi|11559500|gb|AAG37985.1|AF069296_1 replication factor C3 [Plasmodium falciparum]
gi|23497675|gb|AAN37214.1|AE014826_13 replication factor C3 [Plasmodium falciparum 3D7]
Length = 344
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 163/259 (62%), Gaps = 11/259 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP ++D+I ++V+S +K+ + +LPH L +GPPGTGKTST++A C +L+GD
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGD 73
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+LELNASDDRGI VIRD++KTFA ++ + + K K++ILDEAD MT+ A
Sbjct: 74 KRSSFVLELNASDDRGINVIRDQIKTFA-ESKNHYTTCEKTT--LKLIILDEADHMTYPA 130
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q A+RR ME K+ RFCL+CNYV+ I + SRC+ FRF PL + M + I + E+
Sbjct: 131 QNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSEN 190
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK 273
V +++L+ GDMRR + CLQ + L +++E+V+ T IP P K
Sbjct: 191 VNLTEGGIDSLIRVGHGDMRRILNCLQVVS-LSHKNLVIDENVILSTLDIPLPSETK--- 246
Query: 274 VDSFQVLEKYIEDLILEAY 292
++LE + + I E+Y
Sbjct: 247 ----KILEYFTKGSIKESY 261
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 19/141 (13%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQV 380
+++L+ GDMRR + CLQ + L +++E+V+ T IP P K ++
Sbjct: 197 GIDSLIRVGHGDMRRILNCLQVVS-LSHKNLVIDENVILSTLDIPLPSETK-------KI 248
Query: 381 LEKYIEDLILEAYS--ATQLFDQFH---DIVMS------ASSLSDKQKALILEKLAECNA 429
LE + + I E+Y + +D+ + DI+M D L+L+ E
Sbjct: 249 LEYFTKGSIKESYEFVSNLQYDKGYSTKDIMMCLYESVLTYDFPDSAFCLLLKNFGEIEE 308
Query: 430 RLQDGASEYIQILDLGSIVIK 450
R GASE I + L S ++
Sbjct: 309 RCSSGASEQITLSALISAFVE 329
>gi|156100055|ref|XP_001615755.1| replication factor C3 [Plasmodium vivax Sal-1]
gi|148804629|gb|EDL46028.1| replication factor C3, putative [Plasmodium vivax]
Length = 344
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 115/281 (40%), Positives = 173/281 (61%), Gaps = 19/281 (6%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP ++D+I ++V+S ++K + +LPH L +GPPGTGKTST++A C +L+G+
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIQKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGE 73
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+LELNASDDRGI V+RD++KTFA ++ + +N K K++ILDEAD MT+ A
Sbjct: 74 SRSSFVLELNASDDRGISVVRDQIKTFA-ESKNHYNTCEKTT--LKLIILDEADHMTYPA 130
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q A+RR ME K+ RFCL+CNYV+ I + SRC+ FRF PL + M+ + I + E+
Sbjct: 131 QNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMVNKALDIAKSEN 190
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP-----WI 268
V LE+L+ GDMRR + CLQ + L ++++V+ T IP P +
Sbjct: 191 VDLTQDGLESLIRVGRGDMRRILNCLQVVS-LSHKNMTIDQNVILSTLDIPLPEEVKDIL 249
Query: 269 EKLLKV---DSFQVLEKY-------IEDLILEAYSATQLFD 299
E L K +S++ + K I+D+++ Y + +D
Sbjct: 250 EHLTKSTIKESYEFVTKLQCSKGYSIKDIMVNLYESILTYD 290
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 27/145 (18%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----WIEKLLKV 375
LE+L+ GDMRR + CLQ + L ++++V+ T IP P +E L K
Sbjct: 197 GLESLIRVGRGDMRRILNCLQVVS-LSHKNMTIDQNVILSTLDIPLPEEVKDILEHLTKS 255
Query: 376 ---DSFQVLEKY-------IEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 425
+S++ + K I+D+++ Y + +D D L+L+
Sbjct: 256 TIKESYEFVTKLQCSKGYSIKDIMVNLYESILTYD-----------FPDSAVCLLLKNFG 304
Query: 426 ECNARLQDGASEYIQILDLGSIVIK 450
E R GA+E I + L S I+
Sbjct: 305 EIEERCSTGANEQITLSALISAFIE 329
>gi|433431944|ref|ZP_20407710.1| replication factor C small subunit [Haloferax sp. BAB2207]
gi|432193760|gb|ELK50452.1| replication factor C small subunit [Haloferax sp. BAB2207]
Length = 327
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 113/273 (41%), Positives = 167/273 (61%), Gaps = 16/273 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T DDV Q ++V L+ + DLPH LF GP G GKT++ A ++GD
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD+RGI V+RD++K FA+ + G + ++++ LDEADS+T+ AQ
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARSSFGGHD--------YRVIFLDEADSLTNDAQ 128
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL ++ + +++ I E +
Sbjct: 129 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIAAAEDI 188
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW-IEKLLK 273
L+ LV +GGDMRRAI LQ+ A GE +V+ED + + +P IE++++
Sbjct: 189 EVTEDGLDALVYAAGGDMRRAINSLQAAATT--GE-VVDEDAVYMITSTARPEDIEEMVR 245
Query: 274 V---DSFQVLEKYIEDLILE-AYSATQLFDQFH 302
F K +E LI++ + + DQ H
Sbjct: 246 AAIDGEFTAARKQLETLIVDTGMAGGDIIDQLH 278
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 66/125 (52%), Gaps = 9/125 (7%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IEKLLKV---D 376
L+ LV +GGDMRRAI LQ+ A GE +V+ED + + P IE++++
Sbjct: 194 GLDALVYAAGGDMRRAINSLQAAATT--GE-VVDEDAVYMITSTARPEDIEEMVRAAIDG 250
Query: 377 SFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
F K +E LI++ + + DQ H V L ++ ++E++ E + R+ +GA
Sbjct: 251 EFTAARKQLETLIVDTGMAGGDIIDQLHRSVWE-FDLDERDAVRLMERIGEADYRISEGA 309
Query: 436 SEYIQ 440
+E +Q
Sbjct: 310 NEQVQ 314
>gi|221059177|ref|XP_002260234.1| replication factor C3 [Plasmodium knowlesi strain H]
gi|193810307|emb|CAQ41501.1| replication factor C3, putative [Plasmodium knowlesi strain H]
Length = 344
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 105/233 (45%), Positives = 153/233 (65%), Gaps = 4/233 (1%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP ++D+I ++V+S ++K + +LPH L +GPPGTGKTST++A C +L+G+
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIQKFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGE 73
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+LELNASDDRGI V+RD++KTFA ++ + +N K K++ILDEAD MT+ A
Sbjct: 74 SRSSFVLELNASDDRGISVVRDQIKTFA-ESKNHYNTCEKTA--LKLIILDEADHMTYPA 130
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q A+RR ME K+ RFCL+CNYV+ I + SRC+ FRF PL + M+ + I + E+
Sbjct: 131 QNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMVNKALDIAKSEN 190
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP 266
V L++L+ GDMRR + CLQ + L ++++V+ T IP P
Sbjct: 191 VELTKDGLDSLIHVGRGDMRRILNCLQVVS-LSHKNMTIDQNVILSTLDIPLP 242
>gi|408397619|gb|EKJ76759.1| hypothetical protein FPSE_02945 [Fusarium pseudograminearum CS3096]
Length = 390
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 145/215 (67%), Gaps = 5/215 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV Q++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 42 LPWVEKYRPTTLDDVSGHQDILATINKFIEQNRLPHLLLYGPPGTGKTSTILALARRIYG 101
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQQ----TASGFNQDGKPCPPFKIVILDEAD 147
R+ +LELNASDDRGI V+R+++KTFA + G ++ G FK++ILDEAD
Sbjct: 102 AANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGGASRSGNAMAGFKLIILDEAD 161
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + +
Sbjct: 162 AMTSTAQMALRRIMEKYTTNTRFCIIANYSHKLSPALLSRCTRFRFSPLKEGDIRVLVDK 221
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E+V +A++ LV+ S GDMRRA+ LQ+C
Sbjct: 222 VVEEENVQVKGEAIDALVKLSKGDMRRALNVLQAC 256
>gi|323454913|gb|EGB10782.1| hypothetical protein AURANDRAFT_71065 [Aureococcus anophagefferens]
Length = 747
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 126/289 (43%), Positives = 174/289 (60%), Gaps = 15/289 (5%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP ++D+++ ++++SVL++ + LPH L YGPPGTGKTST++AA ++G
Sbjct: 426 PWVEKYRPSSLDELVAHKDIISVLRRLIEADKLPHTLLYGPPGTGKTSTILAAAKDMYGA 485
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
Y+ LELNASDDRGI V+RD++K FA T F++ K++ILDEAD MT A
Sbjct: 486 GYKSMTLELNASDDRGIDVVRDQIKEFA-GTRRLFSKG------IKLIILDEADMMTKDA 538
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR +EK T + RFCLICNY + II L SRC+KFRF PLA + + R+ I +E+
Sbjct: 539 QFALRRVIEKYTANARFCLICNYANKIIPALQSRCTKFRFAPLAPDQIAGRVADIVRREN 598
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP----WIE 269
V KA + L+E GDMRR + LQ+ A GE + E + VTG P P I
Sbjct: 599 VAIGTKATDALLELGKGDMRRVLNVLQAAAVAYPGE-VTYESLFLVTGN-PLPDHVDAIF 656
Query: 270 KLLKVDSFQVLEKYIEDLI-LEAYSATQLFDQFHDIVMLASSLSDKQKA 317
L D+F + DL + Y+ L + + V +A+ L + KA
Sbjct: 657 ASLLNDTFDAARTLLGDLCKTQGYALPDLLTRINAKV-VAAKLPNAAKA 704
>gi|410075631|ref|XP_003955398.1| hypothetical protein KAFR_0A08290 [Kazachstania africana CBS 2517]
gi|372461980|emb|CCF56263.1| hypothetical protein KAFR_0A08290 [Kazachstania africana CBS 2517]
Length = 332
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 116/253 (45%), Positives = 163/253 (64%), Gaps = 12/253 (4%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
+G +PWVEKYRP T+DDV Q+E+V ++K + LPH LFYGPPGTGKTST+I
Sbjct: 2 NGSKDRSNLPWVEKYRPVTLDDVYGQKEIVGTVRKFVEEGKLPHLLFYGPPGTGKTSTII 61
Query: 85 AACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILD 144
A +++G Y +LELNASDDRGI V+R+++K FA T F++ FK++ILD
Sbjct: 62 ALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKEFA-STRQIFSKG------FKLIILD 114
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EAD+MT+AAQ ALRR +EK TK+TRFC++ NY + L SRC++FRF+PL + + TR
Sbjct: 115 EADAMTNAAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPSDAIETR 174
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ-SCARLK--GGEGIVNEDVLEVTG 261
+ + E++ + A L++ S GDMRR + LQ S A L E I ++ + E G
Sbjct: 175 IANVLVHENLKLNDTAKRALLDLSKGDMRRVLNVLQASRATLDDPSNEEITDDIIYECVG 234
Query: 262 VIPKPW-IEKLLK 273
P+P +E +LK
Sbjct: 235 A-PRPEDLETVLK 246
>gi|389594993|ref|XP_003722719.1| putative replication factor C, subunit 3 [Leishmania major strain
Friedlin]
gi|323363947|emb|CBZ12953.1| putative replication factor C, subunit 3 [Leishmania major strain
Friedlin]
Length = 364
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 124/318 (38%), Positives = 180/318 (56%), Gaps = 20/318 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T++ V+ ++++S L+ + ++PH L YGPPGTGKT+T+ A + L+G
Sbjct: 17 LPWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKACAYYLYG 76
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK----------PCPPFKIV 141
R +LE+NASDDRGI V+R + + FA T+S F+ G P FK+V
Sbjct: 77 KARVRANVLEMNASDDRGIDVVRQQTREFAS-TSSIFSMMGTGSSTGGGSGGPAAKFKLV 135
Query: 142 ILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTM 201
ILDEAD M+H AQAALRR +EK T++ RFC++CN+++ II L SRC++FRF P+ +++M
Sbjct: 136 ILDEADQMSHDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSSM 195
Query: 202 LTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
+ RL+Y+ EQE V L S GD+RR + +Q+ A L E I E V VTG
Sbjct: 196 MPRLRYVAEQEGVKYTTDGLAAAFRLSHGDLRRCLNTMQASA-LSANE-ITEESVYRVTG 253
Query: 262 VIPKPW-----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
P P + +L D K E ++ + S L + H ++M D +
Sbjct: 254 N-PTPADVTAIVSDMLSSDFATSWVKAEESVVQKGISMADLTREIHPVMMAMDLPQDCKC 312
Query: 317 ALFKALETLVETSGGDMR 334
L L L + G R
Sbjct: 313 FLLMKLSDLEYYAAGGAR 330
>gi|330801691|ref|XP_003288858.1| hypothetical protein DICPUDRAFT_153140 [Dictyostelium purpureum]
gi|325081104|gb|EGC34633.1| hypothetical protein DICPUDRAFT_153140 [Dictyostelium purpureum]
Length = 348
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 112/234 (47%), Positives = 156/234 (66%), Gaps = 12/234 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK+I+D+I ++++ LPH LFYGPPGTGKTST+ A +L+G
Sbjct: 27 LPWVEKYRPKSINDLIAHDDIIAT-----KSNTLPHLLFYGPPGTGKTSTIQAIARKLYG 81
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ Y +LELNASDDRGI V+R+++KTFA + FN P+K++ILDEADSMT+
Sbjct: 82 ENYSRMVLELNASDDRGIDVVREQIKTFAS-SMFFFNS----TVPYKLIILDEADSMTNI 136
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK TK+TRFC++CNYV II L SRC++FRFKPL ++ RL+ I + E
Sbjct: 137 AQTALRRVIEKYTKTTRFCIVCNYVVKIIPALQSRCTRFRFKPLPDSATEERLKEILKIE 196
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP 266
+V D + ++ ++ GDMR+++ LQS + G I E + + TG P P
Sbjct: 197 NVQIDEEGMKAVLFLGDGDMRKSLNILQSVSMSTNGL-IGEEQIYKCTGN-PSP 248
>gi|292654383|ref|YP_003534280.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|448293928|ref|ZP_21484030.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|448597682|ref|ZP_21654607.1| replication factor C small subunit [Haloferax alexandrinus JCM
10717]
gi|291370302|gb|ADE02529.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|445569321|gb|ELY23895.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|445739143|gb|ELZ90652.1| replication factor C small subunit [Haloferax alexandrinus JCM
10717]
Length = 327
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 112/272 (41%), Positives = 163/272 (59%), Gaps = 14/272 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T DDV Q ++V L+ + DLPH LF GP G GKT++ A ++GD
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD+RGI V+RD++K FA+ + G + ++++ LDEADS+T+ AQ
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARSSFGGHD--------YRVIFLDEADSLTNDAQ 128
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL ++ + +++ I E +
Sbjct: 129 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIAAAEDI 188
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++
Sbjct: 189 EVTEDGLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYMITSTARPEDIEEMVRA 246
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFH 302
F K +E LI++ + + DQ H
Sbjct: 247 AIDGEFTAARKQLETLIVDTGMAGGDIIDQLH 278
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++
Sbjct: 194 GLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYMITSTARPEDIEEMVRAAIDGE 251
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F K +E LI++ + + DQ H V L ++ ++E++ E + R+ +GA+
Sbjct: 252 FTAARKQLETLIVDTGMAGGDIIDQLHRSVWE-FDLDERDAVRLMERIGEADYRISEGAN 310
Query: 437 EYIQ 440
E +Q
Sbjct: 311 EQVQ 314
>gi|428174860|gb|EKX43753.1| hypothetical protein GUITHDRAFT_140204 [Guillardia theta CCMP2712]
Length = 331
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 118/268 (44%), Positives = 164/268 (61%), Gaps = 17/268 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+T+ +V+ ++ V+ L+ ++PH L G PG GKT+ ++A +L G
Sbjct: 12 LPWVEKYRPQTLKEVVGNEDAVARLQAIAKDGNMPHLLLTGSPGIGKTTCVLALARELLG 71
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
D ++E +LELNASD+RGI V+R+K+K FAQQ + PP KI+ILDEADSMT
Sbjct: 72 DSFKEGVLELNASDERGIDVVRNKIKMFAQQKVT--------LPPGRHKIIILDEADSMT 123
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
A+Q A+RRTME + +TRF L CN S II+P+ SRC+ RF L++ +L+RLQ ICE
Sbjct: 124 SASQQAMRRTMELYSNTTRFALACNNSSEIIEPIQSRCAILRFAKLSDKELLSRLQDICE 183
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP---- 266
+E V+ LE L+ T+ GDMR+A+ LQS A G GIVN++ + P P
Sbjct: 184 KEEVLASTDGLEALIFTADGDMRQAVNSLQSTA---NGFGIVNQESVFKVCDQPHPKTAI 240
Query: 267 WIEKLLKVDSFQVLEKYIEDLILEAYSA 294
I K + +EDL YSA
Sbjct: 241 QIVKSCLTGDIKNAHSKLEDLWQRGYSA 268
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP----WIEKLLKVD 376
LE L+ T+ GDMR+A+ LQS A G GIVN++ + P+P I K
Sbjct: 193 GLEALIFTADGDMRQAVNSLQSTA---NGFGIVNQESVFKVCDQPHPKTAIQIVKSCLTG 249
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+ +EDL YSA + + + + +K K L+++ + R+ +G
Sbjct: 250 DIKNAHSKLEDLWQRGYSAQDIVQTIFKVTRNM-DMPEKSKLDFLKEIGIYHMRVLEGVD 308
Query: 437 EYIQI 441
+Q+
Sbjct: 309 SLVQV 313
>gi|367014065|ref|XP_003681532.1| hypothetical protein TDEL_0E00780 [Torulaspora delbrueckii]
gi|359749193|emb|CCE92321.1| hypothetical protein TDEL_0E00780 [Torulaspora delbrueckii]
Length = 336
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 104/213 (48%), Positives = 142/213 (66%), Gaps = 7/213 (3%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N +PWVEKYRP T+DDV Q EVV +++ + LPH LFYGPPGTGKTST++A +
Sbjct: 8 NDGLPWVEKYRPATLDDVYGQNEVVGTVRRFIEEGQLPHLLFYGPPGTGKTSTVVALARE 67
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
++G Y +LELNASDDRGI V+R+++K FA T F++ FK++ILDEAD+M
Sbjct: 68 IYGKNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKLIILDEADAM 120
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+AAQ ALRR +EK TK+TRFC++ NY + L SRC++FRF+PL + R+ +
Sbjct: 121 TNAAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPTEALERRMNKVL 180
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
E + A E L++ S GDMRR + LQ+C
Sbjct: 181 SNEHLKMTTSAKEALLKLSRGDMRRVLNVLQAC 213
>gi|321458433|gb|EFX69502.1| hypothetical protein DAPPUDRAFT_202808 [Daphnia pulex]
Length = 330
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 120/280 (42%), Positives = 172/280 (61%), Gaps = 18/280 (6%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T + +PWVEKYRPK +DD+I Q+++S ++K ++ LPH LFYGPPGTGKTST++A
Sbjct: 2 TSSGNLPWVEKYRPKQLDDLISHQDIISTIRKFINENRLPHLLFYGPPGTGKTSTILACA 61
Query: 88 HQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
+L+ + +LELNASDDRGI V+R+++ +FA T S F FK++ILDEA
Sbjct: 62 KELYTPQQFNSMVLELNASDDRGINVVRNQIMSFAS-TRSIFKSG------FKLIILDEA 114
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT+ AQ ALRR +EK T++ RFCLICNY+S II + SRC++FRF PL + +L R+
Sbjct: 115 DAMTNDAQNALRRVIEKFTENVRFCLICNYMSKIIPAIQSRCTRFRFGPLKSDQILPRMN 174
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP 266
Y+ E+E + + L+ + GDMRR I LQS + + E VNED V + P
Sbjct: 175 YVIEEEKIKVTEDGRQALLSLAHGDMRRVINILQSTS-MAFDE--VNED--HVYTCVGHP 229
Query: 267 WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
LK D V+ + + + AYS + F + +
Sbjct: 230 -----LKSDIANVVSWMLNEDLTSAYSKIRDLQTFKGLAL 264
>gi|431914245|gb|ELK15503.1| Replication factor C subunit 5 [Pteropus alecto]
Length = 345
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 120/242 (49%), Positives = 160/242 (66%), Gaps = 16/242 (6%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
+ K RN +PWVEKYRP+ ++D+I Q+++S ++K +S LPH L YGPPGTGKTST++
Sbjct: 15 AAKIRN--LPWVEKYRPQALNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTIL 72
Query: 85 AACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VIL
Sbjct: 73 ACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFA-STRTIFKKG------FKLVIL 125
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+
Sbjct: 126 DEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVP 185
Query: 204 RLQYICEQESVMCD---FKALETLVET-SGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 259
RL+++ E+E V KAL TL +T S GDMRRA+ LQS + G + E V
Sbjct: 186 RLEHVVEEEKVDISEDGMKALVTLSKTLSSGDMRRALNILQSTSMAFG--KVTEETVYTC 243
Query: 260 TG 261
TG
Sbjct: 244 TG 245
>gi|448611174|ref|ZP_21661808.1| replication factor C small subunit [Haloferax mucosum ATCC
BAA-1512]
gi|445743606|gb|ELZ95087.1| replication factor C small subunit [Haloferax mucosum ATCC
BAA-1512]
Length = 379
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 120/298 (40%), Positives = 173/298 (58%), Gaps = 17/298 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DD+ Q+E+V L + DLPH LF GP G GKT++ A ++GD
Sbjct: 69 WIEKYRPQTLDDIYGQEEIVERLCSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 128
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD RGI V+RD++K FA+ + G + ++I+ LDEADS+T+ AQ
Sbjct: 129 WRGNFLELNASDQRGIDVVRDRIKNFARSSFGGHD--------YRIIFLDEADSLTNDAQ 180
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL ++ + + + I E E +
Sbjct: 181 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAETEEI 240
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
L+ LV +GGDMRRAI LQ+ A GE + E V +T IEK+++
Sbjct: 241 ELTEDGLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYMITSTARPEDIEKMVRA 298
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVET 328
F K +E LI++ + + DQ H V ++A + +E + ET
Sbjct: 299 AIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVW---EFDLDERAAVRLMERIGET 353
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
L+ LV +GGDMRRAI LQ+ A GE + E V +T IEK+++
Sbjct: 246 GLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYMITSTARPEDIEKMVRAAIDGE 303
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F K +E LI++ + + DQ H V L ++ ++E++ E + R+ +GA+
Sbjct: 304 FTAARKQLETLIVDTGMAGGDIIDQLHRSVWE-FDLDERAAVRLMERIGETDYRISEGAN 362
Query: 437 EYIQ 440
E +Q
Sbjct: 363 EQVQ 366
>gi|390600120|gb|EIN09515.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 354
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 148/210 (70%), Gaps = 7/210 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV+ +++ ++ + LPH LFYGPPGTGKTST++A +++G
Sbjct: 36 LPWVEKYRPVTLDDVVSHKDITCTIENFIQKNRLPHLLFYGPPGTGKTSTILAVARRIYG 95
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D +R++ILELNASDDRGI V+R+++K FA +T + F++ +K++ILDEAD MT A
Sbjct: 96 DDFRKQILELNASDDRGIDVVREQIKQFA-ETRTLFSKG------YKLIILDEADMMTQA 148
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQAALRR +E+ TK+ RFC+ICNYV+ I + SRC++FRF PL + R+Q + + E
Sbjct: 149 AQAALRRVIEQYTKNVRFCIICNYVNKITPAIQSRCTRFRFSPLPIPEVERRVQTVVDAE 208
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSC 242
V + L++ S GDMRRA+ LQ+C
Sbjct: 209 GVQLREDGKKALLKLSKGDMRRALNVLQAC 238
>gi|448543893|ref|ZP_21625354.1| replication factor C small subunit [Haloferax sp. ATCC BAA-646]
gi|448551053|ref|ZP_21629195.1| replication factor C small subunit [Haloferax sp. ATCC BAA-645]
gi|448558572|ref|ZP_21633129.1| replication factor C small subunit [Haloferax sp. ATCC BAA-644]
gi|445706035|gb|ELZ57922.1| replication factor C small subunit [Haloferax sp. ATCC BAA-646]
gi|445710609|gb|ELZ62407.1| replication factor C small subunit [Haloferax sp. ATCC BAA-645]
gi|445712324|gb|ELZ64106.1| replication factor C small subunit [Haloferax sp. ATCC BAA-644]
Length = 327
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 112/272 (41%), Positives = 163/272 (59%), Gaps = 14/272 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T DDV Q ++V L+ + DLPH LF GP G GKT++ A ++GD
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD+RGI V+RD++K FA+ + G + ++++ LDEADS+T+ AQ
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARSSFGGHD--------YRVIFLDEADSLTNDAQ 128
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL ++ + +++ I E +
Sbjct: 129 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDI 188
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++
Sbjct: 189 EVTEDGLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYMITSTARPEDIEEMVRA 246
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFH 302
F K +E LI++ + + DQ H
Sbjct: 247 AIDGEFTAARKQLETLIVDTGMAGGDIIDQLH 278
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++
Sbjct: 194 GLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYMITSTARPEDIEEMVRAAIDGE 251
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F K +E LI++ + + DQ H V L ++ ++E++ E + R+ +GA+
Sbjct: 252 FTAARKQLETLIVDTGMAGGDIIDQLHRSVWE-FDLDERDAVRLMERIGEADYRISEGAN 310
Query: 437 EYIQ 440
E +Q
Sbjct: 311 EQVQ 314
>gi|46123299|ref|XP_386203.1| hypothetical protein FG06027.1 [Gibberella zeae PH-1]
Length = 390
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 145/215 (67%), Gaps = 5/215 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV Q++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 42 LPWVEKYRPTTLDDVSGHQDILATINKFIEQNRLPHLLLYGPPGTGKTSTILALARRIYG 101
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQQ----TASGFNQDGKPCPPFKIVILDEAD 147
R+ +LELNASDDRGI V+R+++KTFA + G ++ G FK++ILDEAD
Sbjct: 102 AANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGGASRSGNGMAGFKLIILDEAD 161
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + +
Sbjct: 162 AMTSTAQMALRRIMEKYTTNTRFCIIANYSHKLSPALLSRCTRFRFSPLKEGDIRVLVDK 221
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E+V +A++ LV+ S GDMRRA+ LQ+C
Sbjct: 222 VVEEENVQVKGEAIDALVKLSKGDMRRALNVLQAC 256
>gi|448573535|ref|ZP_21641018.1| replication factor C small subunit [Haloferax lucentense DSM 14919]
gi|445718441|gb|ELZ70131.1| replication factor C small subunit [Haloferax lucentense DSM 14919]
Length = 327
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 112/272 (41%), Positives = 163/272 (59%), Gaps = 14/272 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T DDV Q ++V L+ + DLPH LF GP G GKT++ A ++GD
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD+RGI V+RD++K FA+ + G + ++++ LDEADS+T+ AQ
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARSSFGGHD--------YRVIFLDEADSLTNDAQ 128
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL ++ + +++ I E +
Sbjct: 129 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIATAEDI 188
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++
Sbjct: 189 EVTEDGLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYMITSTARPEDIEEMVRA 246
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFH 302
F K +E LI++ + + DQ H
Sbjct: 247 AIDGEFTAARKQLETLIVDTGMAGGDIIDQLH 278
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++
Sbjct: 194 GLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYMITSTARPEDIEEMVRAAIDGE 251
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F K +E LI++ + + DQ H V L ++ ++E++ E + R+ +GA+
Sbjct: 252 FTAARKQLETLIVDTGMAGGDIIDQLHRSVWE-FDLDERDAVRLMERIGEADYRISEGAN 310
Query: 437 EYIQ 440
E +Q
Sbjct: 311 EQVQ 314
>gi|448622422|ref|ZP_21669116.1| replication factor C small subunit [Haloferax denitrificans ATCC
35960]
gi|445754504|gb|EMA05909.1| replication factor C small subunit [Haloferax denitrificans ATCC
35960]
Length = 327
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 113/272 (41%), Positives = 165/272 (60%), Gaps = 14/272 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T DDV Q ++V L+ + DLPH LF GP G GKT++ A ++GD
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD+RGI V+RD++K FA+ + G + ++++ LDEADS+T+ AQ
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARSSFGGHD--------YRVIFLDEADSLTNDAQ 128
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL ++ + +++ I E +
Sbjct: 129 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDI 188
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK- 273
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++
Sbjct: 189 EVTEDGLDALVYAAGGDMRRAINSLQAAA--TTGEVVDEEAVYMITSTARPEDIEEMVRN 246
Query: 274 -VDS-FQVLEKYIEDLILE-AYSATQLFDQFH 302
+D F K +E LI++ + + DQ H
Sbjct: 247 AIDGEFTAARKQLETLIVDTGMAGGDIIDQLH 278
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDS- 377
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++ +D
Sbjct: 194 GLDALVYAAGGDMRRAINSLQAAA--TTGEVVDEEAVYMITSTARPEDIEEMVRNAIDGE 251
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F K +E LI++ + + DQ H V L +++ ++E++ E + R+ +GA+
Sbjct: 252 FTAARKQLETLIVDTGMAGGDIIDQLHRSVWE-FDLDEREAVRLMERIGEADYRISEGAN 310
Query: 437 EYIQ 440
E +Q
Sbjct: 311 EQVQ 314
>gi|366988323|ref|XP_003673928.1| hypothetical protein NCAS_0A09890 [Naumovozyma castellii CBS 4309]
gi|342299791|emb|CCC67547.1| hypothetical protein NCAS_0A09890 [Naumovozyma castellii CBS 4309]
Length = 336
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 105/212 (49%), Positives = 145/212 (68%), Gaps = 7/212 (3%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N +PWVEKYRP+T+DDV Q EVV+ ++K L+ LPH LFYGPPGTGKTST++A +
Sbjct: 10 NDNLPWVEKYRPETLDDVYGQTEVVTTVRKFLAEGKLPHLLFYGPPGTGKTSTIVALARE 69
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
++G Y +LELNASDDRGI V+R+++K FA T F++ FK++ILDEAD+M
Sbjct: 70 IYGRNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKLIILDEADAM 122
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+AAQ ALRR +EK TK+TRFC++ NY + L SRC++FRF+PL + R+ +
Sbjct: 123 TNAAQNALRRIIEKYTKNTRFCILANYSHKLTPALLSRCTRFRFQPLPREAIEMRIANVL 182
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQS 241
E++ +A E L+ S GDMRR + LQ+
Sbjct: 183 VHENLKLSDEAKEALITLSQGDMRRVLNVLQA 214
>gi|401429678|ref|XP_003879321.1| putative replication factor C, subunit 3 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495571|emb|CBZ30876.1| putative replication factor C, subunit 3 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 364
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 126/318 (39%), Positives = 180/318 (56%), Gaps = 20/318 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T++ V+ ++++S L+ + ++PH L YGPPGTGKT+T+ A + L+G
Sbjct: 17 LPWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKACAYYLYG 76
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK----------PCPPFKIV 141
D R +LE+NASDDRGI V+R + + FA T+S F+ G P FK+V
Sbjct: 77 KDRVRANVLEMNASDDRGIDVVRQQTREFAS-TSSIFSMMGSGSSTGSGGGGPAAKFKLV 135
Query: 142 ILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTM 201
ILDEAD M++ AQAALRR +EK T++ RFC++CN+++ II L SRC++FRF P+ ++ M
Sbjct: 136 ILDEADQMSYDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAM 195
Query: 202 LTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
+ RL+Y+ EQE V L S GD+RR + +QS A L E I E V VTG
Sbjct: 196 MPRLRYVAEQEGVKYTTDGLAAAFRLSRGDLRRCLNTMQSSA-LSANE-ITEESVYRVTG 253
Query: 262 VIPKPW-----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
P P + +L D K E ++ + S L + H I+M D +
Sbjct: 254 N-PTPADVTAIVSDMLSSDFATSWIKVEEGVLQKGISMADLTREIHPIMMAMDLPQDCKC 312
Query: 317 ALFKALETLVETSGGDMR 334
L L L + G R
Sbjct: 313 FLLMKLSDLEYYAAGGAR 330
>gi|313124845|ref|YP_004035109.1| replication factor c small subunit [Halogeometricum borinquense DSM
11551]
gi|448287254|ref|ZP_21478467.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
gi|312291210|gb|ADQ65670.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
gi|445572462|gb|ELY27000.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
Length = 328
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 114/272 (41%), Positives = 167/272 (61%), Gaps = 14/272 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DDV Q+++V L+ + DLPH LF GP G GKT++ A ++GD
Sbjct: 17 WIEKYRPQTLDDVYGQEDIVERLRSYIEQDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD+RGI V+RD++K FA+ + GF+ ++I+ LDEADS+T AQ
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARSSFGGFD--------YRIIFLDEADSLTSDAQ 128
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL ++ + +++ I E E +
Sbjct: 129 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVREQVKDIAETEEI 188
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK- 273
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++
Sbjct: 189 ELTEDGLDALVYAAGGDMRRAINSLQAAA--TTGEIVDEEAVYLITSTARPEDIEEMVQS 246
Query: 274 -VDS-FQVLEKYIEDLILE-AYSATQLFDQFH 302
+D F +E L+++ + + DQ H
Sbjct: 247 AIDGEFLTARSKLETLLVDTGMAGGDIIDQLH 278
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDS- 377
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++ +D
Sbjct: 194 GLDALVYAAGGDMRRAINSLQAAA--TTGEIVDEEAVYLITSTARPEDIEEMVQSAIDGE 251
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F +E L+++ + + DQ H V L ++ ++E++ E + R+ +GA+
Sbjct: 252 FLTARSKLETLLVDTGMAGGDIIDQLHRSVWDF-DLDERTTVRLMERIGEADYRITEGAN 310
Query: 437 EYIQ 440
E +Q
Sbjct: 311 EQVQ 314
>gi|448582711|ref|ZP_21646215.1| replication factor C small subunit [Haloferax gibbonsii ATCC 33959]
gi|445732359|gb|ELZ83942.1| replication factor C small subunit [Haloferax gibbonsii ATCC 33959]
Length = 327
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 112/272 (41%), Positives = 163/272 (59%), Gaps = 14/272 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T DDV Q ++V L+ + DLPH LF GP G GKT++ A ++GD
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD+RGI V+RD++K FA+ + G + ++++ LDEADS+T+ AQ
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARSSFGGHD--------YRVIFLDEADSLTNDAQ 128
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL ++ + +++ I E +
Sbjct: 129 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDI 188
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++
Sbjct: 189 EVTEDGLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYMITSTARPEDIEEMVRA 246
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFH 302
F K +E LI++ + + DQ H
Sbjct: 247 AIDGEFTTARKQLETLIVDTGMAGGDIIDQLH 278
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++
Sbjct: 194 GLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYMITSTARPEDIEEMVRAAIDGE 251
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F K +E LI++ + + DQ H V L +++ ++E++ E + R+ +GA+
Sbjct: 252 FTTARKQLETLIVDTGMAGGDIIDQLHRSVWE-FDLDEREAVRLMERIGEADYRISEGAN 310
Query: 437 EYIQ 440
E +Q
Sbjct: 311 EQVQ 314
>gi|403342743|gb|EJY70695.1| Replication factor C subunit 5 [Oxytricha trifallax]
Length = 324
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 156/238 (65%), Gaps = 15/238 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+P+VEKYRP ++ +I E+++ +++ + +PH LF+GPPGTGKTS +IA L+G
Sbjct: 5 LPFVEKYRPNDLESIISHDEIITTVRRFIETRKMPHLLFHGPPGTGKTSCVIAIAKHLYG 64
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTF--AQQTASGFNQDGKPCPPFKIVILDEADSM 149
Y+ ILELNASDDRGI V+R+++K+F QQ S K+VILDE DSM
Sbjct: 65 KAEYKNMILELNASDDRGINVVREQIKSFCSTQQLMS---------KGIKLVILDECDSM 115
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T +AQ ALRR +EK TK+TRFC ICNYVS II L SRC++FRF PL +L +L I
Sbjct: 116 TSSAQFALRRIVEKYTKTTRFCFICNYVSKIIPALQSRCTRFRFGPLQTENILPKLHEIA 175
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW 267
E E++ D A E++V+ SGGDMR+ + L+SC+ + I ++V +VTG P P+
Sbjct: 176 ELENLRLDQDAAESIVKLSGGDMRKVLNVLESCSL--AHKHITLQNVYDVTGR-PSPY 230
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 14/154 (9%)
Query: 296 QLFDQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 355
+ + H+I L + D+ A E++V+ SGGDMR+ + L+SC+ + I +
Sbjct: 166 NILPKLHEIAELENLRLDQDAA-----ESIVKLSGGDMRKVLNVLESCSL--AHKHITLQ 218
Query: 356 DVLEVTGVIPNPW-IEKL---LKVDSFQVLEKYIEDLI-LEAYSATQLFDQFHDIVMSAS 410
+V +VTG P+P+ IE + L D I L +++ S + + H VM
Sbjct: 219 NVYDVTGR-PSPYDIENIYISLNNDRLNDALNTINSLKQVKSLSVEDIISEIHKKVMQTK 277
Query: 411 SLSDKQKALILEKLAECNARLQDGASEYIQILDL 444
L D+ K ++ ++AE R+ G+SE + + L
Sbjct: 278 ML-DEMKIFLISRMAEIEYRMAQGSSERVNLASL 310
>gi|448560589|ref|ZP_21634037.1| replication factor C small subunit [Haloferax prahovense DSM 18310]
gi|445722239|gb|ELZ73902.1| replication factor C small subunit [Haloferax prahovense DSM 18310]
Length = 327
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 112/272 (41%), Positives = 163/272 (59%), Gaps = 14/272 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T DDV Q ++V L+ + DLPH LF GP G GKT++ A ++GD
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD+RGI V+RD++K FA+ + G + ++++ LDEADS+T+ AQ
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARSSFGGHD--------YRVIFLDEADSLTNDAQ 128
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL ++ + +++ I E +
Sbjct: 129 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDI 188
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++
Sbjct: 189 EVTEDGLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYMITSTARPEDIEEMVRA 246
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFH 302
F K +E LI++ + + DQ H
Sbjct: 247 AIDGEFTTARKQLETLIVDTGMAGGDIIDQLH 278
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 7/124 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++
Sbjct: 194 GLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYMITSTARPEDIEEMVRAAIDGE 251
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F K +E LI++ + + DQ H V L +++ ++E++ E + R+ +GA+
Sbjct: 252 FTTARKQLETLIVDTGMAGGDIIDQLHRSVWE-FDLGEREAVRLMERIGEADYRISEGAN 310
Query: 437 EYIQ 440
E +Q
Sbjct: 311 EQVQ 314
>gi|303319413|ref|XP_003069706.1| Activator 1 subunit 3 , putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240109392|gb|EER27561.1| Activator 1 subunit 3 , putative [Coccidioides posadasii C735 delta
SOWgp]
Length = 398
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 105/215 (48%), Positives = 143/215 (66%), Gaps = 5/215 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV Q++++ + + + LPH L YGPPGTGKTST++A Q++G
Sbjct: 43 LPWVEKYRPSTLDDVSGHQDIIATINRFIESNRLPHLLLYGPPGTGKTSTILALARQIYG 102
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQ----TASGFNQDGKPCPPFKIVILDEAD 147
R+ +LELNASDDRGI V+R+++KTFA + + Q G FK++ILDEAD
Sbjct: 103 VKNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQAGSKLGAFKLIILDEAD 162
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AAQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + +
Sbjct: 163 AMTAAAQMALRRIMEKYTANTRFCIIANYTHKLTPALLSRCTRFRFSPLKEQDIRVLVDQ 222
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E V A+++LV S GDMRRA+ LQ+C
Sbjct: 223 VIEKEQVRIQPDAIDSLVRLSKGDMRRALNVLQAC 257
>gi|171185161|ref|YP_001794080.1| replication factor C small subunit [Pyrobaculum neutrophilum
V24Sta]
gi|170934373|gb|ACB39634.1| Replication factor C [Pyrobaculum neutrophilum V24Sta]
Length = 319
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 110/233 (47%), Positives = 150/233 (64%), Gaps = 13/233 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV S L++ + ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC-PPFKIVILDEADSMTHAA 153
+RE LELNASD+RGI VIR++VK FA+ P PFK+VILDEAD+MT A
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTA---------PIKAPFKLVILDEADNMTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME ++TRF L+ NYVS II+P+ SR RF PL ++ ++ RL+YI E E
Sbjct: 117 QQALRRIMEIYAQNTRFILLANYVSGIIEPIQSRVVMVRFNPLPKDAVIARLRYIAENEG 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI-PK 265
+ ALET+ E + GDMR+AI LQ A I E V + G++ PK
Sbjct: 177 IKASDDALETIFEFTQGDMRKAINALQIAA--ATSREITEETVAKALGLVSPK 227
>gi|119182767|ref|XP_001242497.1| hypothetical protein CIMG_06393 [Coccidioides immitis RS]
gi|392865396|gb|EAS31179.2| activator 1 subunit 3 [Coccidioides immitis RS]
Length = 398
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 105/215 (48%), Positives = 143/215 (66%), Gaps = 5/215 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV Q++++ + + + LPH L YGPPGTGKTST++A Q++G
Sbjct: 43 LPWVEKYRPSTLDDVSGHQDIIATINRFIESNRLPHLLLYGPPGTGKTSTILALARQIYG 102
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQ----TASGFNQDGKPCPPFKIVILDEAD 147
R+ +LELNASDDRGI V+R+++KTFA + + Q G FK++ILDEAD
Sbjct: 103 VKNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQAGSKLGAFKLIILDEAD 162
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AAQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + +
Sbjct: 163 AMTAAAQMALRRIMEKYTANTRFCIIANYTHKLTPALLSRCTRFRFSPLKEQDIRVLVDQ 222
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E V A+++LV S GDMRRA+ LQ+C
Sbjct: 223 VIEKEQVRIQPDAIDSLVRLSKGDMRRALNVLQAC 257
>gi|145590269|ref|YP_001152271.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
gi|158514158|sp|A4WGV2.1|RFCS1_PYRAR RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|145282037|gb|ABP49619.1| Replication factor C [Pyrobaculum arsenaticum DSM 13514]
Length = 329
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 102/209 (48%), Positives = 141/209 (67%), Gaps = 7/209 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV + L++ + G ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NYVS II P+ SRC+ FRF P+ + M RL++I + E +
Sbjct: 119 QALRRIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLRHIAKSEGI 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCA 243
A++ + E S GDMR+AI LQ A
Sbjct: 179 ELRDDAIDLIYEVSEGDMRKAINLLQVAA 207
>gi|154344961|ref|XP_001568422.1| putative replication factor C, subunit 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065759|emb|CAM43533.1| putative replication factor C, subunit 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 364
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 126/324 (38%), Positives = 179/324 (55%), Gaps = 18/324 (5%)
Query: 26 GKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIA 85
GK +PWVEKYRP T++ V+ ++++S L+ ++ ++PH L YGPPGTGKT+T+ A
Sbjct: 10 GKVAASHLPWVEKYRPSTLESVVAHEDILSTLRHLMNSGNMPHLLLYGPPGTGKTTTIKA 69
Query: 86 ACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTA---------SGFNQDGKPC 135
+ L+G D R +LE+NASDDRGI V+R + + FA T+ S + G
Sbjct: 70 CAYYLYGKDRVRANVLEMNASDDRGIDVVRQQTREFASTTSIFSVMGSSSSTGSGSGGSA 129
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
FK+VILDEAD M+H AQAALRR +EK T++ RFCL+CN+++ II L SRC++FRF P
Sbjct: 130 VKFKLVILDEADQMSHDAQAALRRVIEKYTRNVRFCLLCNHINKIIPALQSRCTRFRFAP 189
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255
+ ++ M+ RL+Y+ E E V L S GD+RR + +Q+ A L E I E
Sbjct: 190 VKKSAMMPRLRYVAEHEGVKYTTDGLAAAYRLSQGDLRRCLNTMQASA-LSANE-ITEES 247
Query: 256 VLEVTGVIPKPW-----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASS 310
V VTG P P + +L D K E + + S L + H +VM
Sbjct: 248 VYRVTGN-PTPADVTTIVSHMLSSDFATSWIKTEEAVTQKGISMADLTREIHPVVMAMDL 306
Query: 311 LSDKQKALFKALETLVETSGGDMR 334
D + L L L + G R
Sbjct: 307 PQDCKCFLLMKLSDLEYYAAGGAR 330
>gi|156084582|ref|XP_001609774.1| replication factor C3 protein [Babesia bovis T2Bo]
gi|154797026|gb|EDO06206.1| replication factor C3 protein, putative [Babesia bovis]
Length = 348
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 111/248 (44%), Positives = 155/248 (62%), Gaps = 7/248 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPWVEKYRP++ D+I +++S L LPH LF+GPPGTGKTST++A L+G
Sbjct: 7 VPWVEKYRPESFSDIISHDDILSTLMNFAEKGQLPHLLFHGPPGTGKTSTIMAVSRYLYG 66
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT---ASGF-NQDGKPCPPFKIVILDEADS 148
++ELNASD+RGI+ +R+++KTFA+ + +SG D P K++ILDEAD
Sbjct: 67 SHRHSYVMELNASDERGIETVREQIKTFAETSNTFSSGIVGSDSGPRTNLKLIILDEADQ 126
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT+AAQ +LRR ME + + RFCLICN+++ II P+ SRC+ FRF PL + + R I
Sbjct: 127 MTNAAQNSLRRIMEIYSSNVRFCLICNFMNRIIPPIQSRCTGFRFPPLKNDVVKRRTADI 186
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG--EGIVNEDVLEVTGVIPKP 266
+ E + AL+TL E GDMRR + CLQ A G + ++ DV+ T +P P
Sbjct: 187 AKAEGLTVSECALDTLAEIGQGDMRRVLNCLQVTAMSIGATRDKVITSDVVISTAGLPNP 246
Query: 267 W-IEKLLK 273
I KLL+
Sbjct: 247 TEISKLLQ 254
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 67/136 (49%), Gaps = 14/136 (10%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGG--EGIVNEDVLEVTGVIPNPW-IEKLLKV-- 375
AL+TL E GDMRR + CLQ A G + ++ DV+ T +PNP I KLL+
Sbjct: 198 ALDTLAEIGQGDMRRVLNCLQVTAMSIGATRDKVITSDVVISTAGLPNPTEISKLLQRLM 257
Query: 376 -DSFQVLEKYIEDLI-LEAYSATQLFDQFHDIVMSASSLSDKQKALILE---KLAECNAR 430
+SF+ Y+ L ++ YS L + ++ D +I++ +L + R
Sbjct: 258 QESFKDCVDYVVTLNQVQGYSVEDLVTALYRSILRI----DWPNVVIVQLLIRLGDIEQR 313
Query: 431 LQDGASEYIQILDLGS 446
L GAS YIQI L S
Sbjct: 314 LSAGASPYIQIASLVS 329
>gi|145343698|ref|XP_001416450.1| replication factor C subunit 5 (36kDa), probable [Ostreococcus
lucimarinus CCE9901]
gi|144576675|gb|ABO94743.1| replication factor C subunit 5 (36kDa), probable [Ostreococcus
lucimarinus CCE9901]
Length = 332
Score = 221 bits (563), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 110/245 (44%), Positives = 156/245 (63%), Gaps = 11/245 (4%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N+ +PW EKYRP + +V+ + +V V+ K G LPH LF+GPPGTGKTST++A +
Sbjct: 10 NRALPWTEKYRPVGLSEVVAHKAIVDVINKFADGGQLPHLLFHGPPGTGKTSTILALAKE 69
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
L+G + +LELNASD RGI V+RD++++FA T F+ FK+VI+DE DSM
Sbjct: 70 LYGLNFSNMVLELNASDARGINVVRDEIQSFAS-TMRPFST------TFKLVIMDECDSM 122
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ ALRR MEK T+ TRFCLICNY S +I L SRC+KFRF P+A ML RL++I
Sbjct: 123 TKDAQFALRRIMEKYTQHTRFCLICNYASKVIPALQSRCTKFRFSPIASGDMLQRLRHIV 182
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE-VTGVIPKPWI 268
E+ +L T+ + GDMR+ + LQS + +V +D + +TG + + +
Sbjct: 183 NSENFSISDNSLATIQKLGEGDMRKTVNILQSVSL---SASVVTDDAIHLITGHVGQLQV 239
Query: 269 EKLLK 273
++LL+
Sbjct: 240 DELLR 244
>gi|385806402|ref|YP_005842800.1| replication factor C small subunit [Fervidicoccus fontis Kam940]
gi|383796265|gb|AFH43348.1| replication factor C small subunit [Fervidicoccus fontis Kam940]
Length = 326
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 111/241 (46%), Positives = 157/241 (65%), Gaps = 12/241 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP+++D++++Q+E + LKK + + PH LF GPPGTGKT+ +A H L+G
Sbjct: 12 WAEKYRPRSLDEIVDQEETIIRLKKFVKEKNAPHMLFAGPPGTGKTTAALAFAHDLYGKN 71
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
Y++ +LELNASD+RGI VIR K+K FA+ + G PFK++ILDE+D++T AQ
Sbjct: 72 YQQFVLELNASDERGIDVIRGKIKEFARTSVVG-------GVPFKLIILDESDNLTSDAQ 124
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME T ++RF LI NY S II+P+ SR + FRF PL + ++ RL++I E ESV
Sbjct: 125 QALRRMMENFTLTSRFILIANYPSKIIEPIQSRTALFRFSPLKKEDVIKRLKWILENESV 184
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPKPWIEKLLK 273
+ ALE + E S GDMR+AI LQS + + G V D V +V G+ I ++L
Sbjct: 185 SYEESALEAVFEISEGDMRKAINVLQSASAI----GKVTVDTVYKVVGLAHPKEIREMLN 240
Query: 274 V 274
+
Sbjct: 241 L 241
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEKLLKV---D 376
ALE + E S GDMR+AI LQS + + G V D V +V G+ I ++L +
Sbjct: 190 ALEAVFEISEGDMRKAINVLQSASAI----GKVTVDTVYKVVGLAHPKEIREMLNLALSG 245
Query: 377 SFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNARLQDG 434
F + + L+++ S + Q H + S LS++ K +I + E R+ +G
Sbjct: 246 DFNGARERLRKLMMDYGLSGVDVIKQIHKEIFSNEIDLSEEMKLMIADYTGEILFRITEG 305
Query: 435 ASEYIQI 441
+ + IQ+
Sbjct: 306 SDDEIQL 312
>gi|354466990|ref|XP_003495954.1| PREDICTED: replication factor C subunit 5 [Cricetulus griseus]
Length = 338
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 155/234 (66%), Gaps = 10/234 (4%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
R + +PWVEKYRP+T+ D+I Q+++S ++K +S LPH L YGPPGTGKTST++A
Sbjct: 14 RARNLPWVEKYRPQTLADLISHQDILSSIQKFISEDRLPHLLLYGPPGTGKTSTILACAK 73
Query: 89 QLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDEAD
Sbjct: 74 QLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEAD 126
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL++
Sbjct: 127 AMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 186
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
+ ++E+V ++ L+ S GDMRRA+ LQS G + E V TG
Sbjct: 187 VVQEENVDISEDGMKALITLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG 238
>gi|320040847|gb|EFW22780.1| DNA replication factor C subunit [Coccidioides posadasii str.
Silveira]
Length = 398
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 105/215 (48%), Positives = 143/215 (66%), Gaps = 5/215 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV Q++++ + + + LPH L YGPPGTGKTST++A Q++G
Sbjct: 43 LPWVEKYRPSTLDDVSGHQDIIATINRFIESNRLPHLLLYGPPGTGKTSTILALARQIYG 102
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQ----TASGFNQDGKPCPPFKIVILDEAD 147
R+ +LELNASDDRGI V+R+++KTFA + + Q G FK++ILDEAD
Sbjct: 103 VKNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQAGSNLGAFKLIILDEAD 162
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AAQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + +
Sbjct: 163 AMTAAAQMALRRIMEKYTANTRFCIIANYTHKLTPALLSRCTRFRFSPLKEQDIRVLVDQ 222
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E V A+++LV S GDMRRA+ LQ+C
Sbjct: 223 VIEKEQVRIQPDAIDSLVRLSKGDMRRALNVLQAC 257
>gi|341038392|gb|EGS23384.1| DNA replication factor C-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 388
Score = 221 bits (562), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 105/214 (49%), Positives = 147/214 (68%), Gaps = 4/214 (1%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+ DV Q++++ + K + LPH LFYGPPGTGKTST++A +++G
Sbjct: 42 LPWVEKYRPATLSDVSGHQDILATINKFIESNRLPHLLFYGPPGTGKTSTILALARRIYG 101
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPCPPFKIVILDEADS 148
+ R+ +LELNASDDRGI+V+R+++KTFA Q G + FK++ILDEAD+
Sbjct: 102 AENMRQMVLELNASDDRGIEVVREQIKTFASTKQIFTMGSSAGRAGIAAFKLIILDEADA 161
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT+ AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + + + +
Sbjct: 162 MTNTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEQDIRSLVDKV 221
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
E+E+V A+E+LV+ S GDMRRA+ LQ+C
Sbjct: 222 IEEENVKITPDAVESLVKLSRGDMRRALNVLQAC 255
>gi|345790910|ref|XP_534696.3| PREDICTED: replication factor C subunit 5 [Canis lupus familiaris]
Length = 339
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 116/236 (49%), Positives = 155/236 (65%), Gaps = 12/236 (5%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
K RN +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++A
Sbjct: 15 KIRN--LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILAC 72
Query: 87 CHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDE
Sbjct: 73 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDE 125
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL
Sbjct: 126 ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRL 185
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
+++ +E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 186 EHVVGEEKVDLSEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG 239
>gi|403218101|emb|CCK72593.1| hypothetical protein KNAG_0K02300 [Kazachstania naganishii CBS
8797]
Length = 334
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 111/244 (45%), Positives = 156/244 (63%), Gaps = 10/244 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DDV Q E+VSVL K + LPH LFYGPPGTGKTST++A +++G
Sbjct: 6 LPWVEKYRPSSLDDVYGQGEIVSVLHKFIQENRLPHLLFYGPPGTGKTSTIVALAREIYG 65
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y +LELNASDDRGI V+R+++K FA T F++ FK+VILDEAD+MT+A
Sbjct: 66 KNYSHMVLELNASDDRGIDVVRNQIKEFA-STRQIFSRG------FKLVILDEADAMTNA 118
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK TK+TRFC++ NY + L SRC++FRF+PL E+ + R+ + E
Sbjct: 119 AQNALRRIIEKYTKNTRFCILANYSHKLTPALQSRCTRFRFQPLPEDAIKRRIANVLVHE 178
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKG---GEGIVNEDVLEVTGVIPKPWIE 269
+ A++ L++ S GDMRR + LQ+ G + + + + E G +
Sbjct: 179 HLRVSEDAVQALIKLSKGDMRRVLNVLQASKATLGDDESDEVSTDTIYECCGAARPADLR 238
Query: 270 KLLK 273
K+LK
Sbjct: 239 KILK 242
>gi|313212534|emb|CBY36498.1| unnamed protein product [Oikopleura dioica]
gi|313219619|emb|CBY30541.1| unnamed protein product [Oikopleura dioica]
Length = 329
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 114/263 (43%), Positives = 168/263 (63%), Gaps = 15/263 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD+I E++S +KK + LPH LFYGPPGTGKTST++A +L+G
Sbjct: 8 LPWVEKYRPNKLDDLISHTEIISTIKKFIDNEQLPHLLFYGPPGTGKTSTILAVAKELYG 67
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++ +LELNASD RGI V+R+++ FA + C FK++ILDE D+MT
Sbjct: 68 AKNLKKMVLELNASDARGINVVRNEILNFASSRSLH-------CKGFKVIILDECDAMTR 120
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQAALRR MEK TK+ RFCLICNY+ +I + SRC++FRF PL+ M+ R+ ++ E+
Sbjct: 121 DAQAALRRVMEKFTKNVRFCLICNYLGKLIPAIQSRCTRFRFAPLSVEQMMPRINHVVEE 180
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL 271
E + D ++ L++ + GDMRR++ LQ A + ++ V +VTG + I ++
Sbjct: 181 EGIDIDQNGMDLLLKMAEGDMRRSLNILQ--ASHLAFNKVTDDIVYKVTGRPRRNDIRRM 238
Query: 272 LKVDSFQVLEKY----IEDLILE 290
++ Q + KY IE+L+LE
Sbjct: 239 MEWLLNQDI-KYCMDSIEELMLE 260
Score = 38.9 bits (89), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 11/128 (8%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQ 379
++ L++ + GDMRR++ LQ A + ++ V +VTG I ++++ Q
Sbjct: 188 NGMDLLLKMAEGDMRRSLNILQ--ASHLAFNKVTDDIVYKVTGRPRRNDIRRMMEWLLNQ 245
Query: 380 VLEKY----IEDLILEAYSATQ--LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQD 433
+ KY IE+L+LE A L D + +I + L D KA IL LA+ RL
Sbjct: 246 DI-KYCMDSIEELMLENGIALNDVLTDLYEEI--CEADLPDIPKAEILSALADIEYRLNI 302
Query: 434 GASEYIQI 441
GA+E IQ+
Sbjct: 303 GATEKIQL 310
>gi|146101518|ref|XP_001469135.1| putative replication factor C, subunit 3 [Leishmania infantum
JPCM5]
gi|398023497|ref|XP_003864910.1| replication factor C, subunit 3, putative [Leishmania donovani]
gi|134073504|emb|CAM72235.1| putative replication factor C, subunit 3 [Leishmania infantum
JPCM5]
gi|322503146|emb|CBZ38230.1| replication factor C, subunit 3, putative [Leishmania donovani]
Length = 364
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 123/318 (38%), Positives = 180/318 (56%), Gaps = 20/318 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T++ V+ ++++S L+ + ++PH L YGPPGTGKT+T+ A + L+G
Sbjct: 17 LPWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKACAYYLYG 76
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK----------PCPPFKIV 141
D R +LE+NASDDRGI V+R + + FA T+S F+ G P FK+V
Sbjct: 77 KDRVRANVLEMNASDDRGIDVVRQQTREFAS-TSSIFSMMGSGSSTGGGSGGPAAKFKLV 135
Query: 142 ILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTM 201
ILDEAD M+H AQAALRR +EK T++ RFC++CN+++ II L SRC++FRF P+ ++ M
Sbjct: 136 ILDEADQMSHDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAM 195
Query: 202 LTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
+ RL+++ EQE V L S GD+RR + +Q+ A L E + E V VTG
Sbjct: 196 MPRLRFVAEQEGVKYTTDGLAAAFRLSHGDLRRCLNTMQASA-LSANE-VTEESVYRVTG 253
Query: 262 VIPKPW-----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
P P + +L D K E ++ + S L + H ++M D +
Sbjct: 254 N-PTPADVTAIVSDMLSSDFATSWIKVEESVVQKGISIADLTREIHPVMMAMDLPQDCKC 312
Query: 317 ALFKALETLVETSGGDMR 334
L L L + G R
Sbjct: 313 FLLMKLSDLEYYAAGGAR 330
>gi|47115239|emb|CAG28579.1| RFC5 [Homo sapiens]
Length = 340
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 114/235 (48%), Positives = 155/235 (65%), Gaps = 10/235 (4%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + +PWVEKYRP+T++D+I Q+++S ++K ++ LPH L YGPPGTGKTST++A
Sbjct: 15 TKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACA 74
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ D + +LELNASDDRGI +IR + +FA T + F + FK+VILDEA
Sbjct: 75 KQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFAS-TRTIFKKG------FKLVILDEA 127
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+
Sbjct: 128 DAMTQDAQNALRGVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 187
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
++ E+E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 188 HVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG 240
>gi|405974676|gb|EKC39302.1| Replication factor C subunit 5 [Crassostrea gigas]
Length = 336
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 110/229 (48%), Positives = 152/229 (66%), Gaps = 12/229 (5%)
Query: 29 RNKP-VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
RN P +PWVEKYRPK +D++I ++++S + K + LPH LFYGPPGTGKTST++A
Sbjct: 11 RNNPNLPWVEKYRPKQLDELISHKDIISTIDKFVKEDRLPHLLFYGPPGTGKTSTILAVA 70
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
Q++ + +LELNASDDRGI ++R ++ +FA T + F +KIVILDEA
Sbjct: 71 KQIYSPKEFNSMVLELNASDDRGIGIVRGQILSFAS-TRTIFKSG------YKIVILDEA 123
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T++TRFC+ICNY+S II L SRC++FRF PL + M+ RLQ
Sbjct: 124 DAMTRDAQNALRRVIEKFTENTRFCIICNYLSKIIPALQSRCTRFRFGPLGTDQMVPRLQ 183
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255
++ +QE ++ LV + GDMR+A+ LQS +VNED
Sbjct: 184 HVIQQEQCNVTEDGMKALVTLANGDMRKALNILQST---HMAHDVVNED 229
>gi|374327674|ref|YP_005085874.1| replication factor C small subunit [Pyrobaculum sp. 1860]
gi|356642943|gb|AET33622.1| replication factor C small subunit [Pyrobaculum sp. 1860]
Length = 329
Score = 221 bits (562), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 139/209 (66%), Gaps = 7/209 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV + L+ + D+PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRGFVKSGDMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NYVS II P+ SRC+ FRF P+ +N M RL+ I + E V
Sbjct: 119 QALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAIFRFSPMPKNLMAERLRLIAKSEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCA 243
A++ + E S GDMR+AI LQ A
Sbjct: 179 ELRDDAIDIIYELSEGDMRKAINLLQVVA 207
>gi|324511848|gb|ADY44927.1| Replication factor C subunit 5 [Ascaris suum]
Length = 341
Score = 220 bits (561), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 118/278 (42%), Positives = 168/278 (60%), Gaps = 9/278 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DD++ +E+++ L K + LPH LFYGPPGTGKTS ++ A +F
Sbjct: 12 MPWVEKYRPATLDDLVSHEEIIATLAKLVKKRRLPHLLFYGPPGTGKTSAILVAARMMFT 71
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
+LELNASDDRGI ++RD++ FAQ +++GK K++ILDEAD+MT
Sbjct: 72 PKQLASMVLELNASDDRGIGIVRDQIMNFAQTKTLHVDENGKS--HIKLIILDEADAMTK 129
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T++ RFC+ICNY+S II + SRC++FRF PL E +L RL++I +
Sbjct: 130 DAQNALRRVIEKFTENVRFCIICNYLSKIIPAVQSRCTRFRFAPLKEEQILPRLRHIAKS 189
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL 271
ES+ L++ +GGDMRR + LQS A I E V G IE +
Sbjct: 190 ESLKLTEDGERALMKLAGGDMRRVLNILQSTA--MAFPKIDEESVYLCVGQPLPSVIEDI 247
Query: 272 LKV---DSFQVLEKYIEDL-ILEAYSATQLFDQFHDIV 305
+++ DSF+ IE + L A++ + + D V
Sbjct: 248 VRILLNDSFEDAFTKIEGIRCLHAFALSDILASMQDAV 285
>gi|301768619|ref|XP_002919725.1| PREDICTED: replication factor C subunit 5-like [Ailuropoda
melanoleuca]
Length = 340
Score = 220 bits (561), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 155/234 (66%), Gaps = 10/234 (4%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
R + +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++A
Sbjct: 16 RIRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAK 75
Query: 89 QLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDEAD
Sbjct: 76 QLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEAD 128
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL++
Sbjct: 129 AMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 188
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
+ ++E V ++ LV + GDMRRA+ LQS G + E V TG
Sbjct: 189 VIKEEKVDLSEDGMKALVTLASGDMRRALNILQSTNMAFG--KVTEETVYTCTG 240
>gi|327301329|ref|XP_003235357.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
gi|326462709|gb|EGD88162.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
Length = 397
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 155/247 (62%), Gaps = 17/247 (6%)
Query: 13 DAPSSSKTSVSTSGKTRNK--------PV------PWVEKYRPKTIDDVIEQQEVVSVLK 58
DAP + T+ T+ T K P+ PWVEKYRP T+DDV Q++++ +
Sbjct: 11 DAPPARDTAAFTADPTDVKGKRIVADLPIEAGDNLPWVEKYRPDTLDDVSGHQDIIATIN 70
Query: 59 KCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKV 117
+ + LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++
Sbjct: 71 RFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRGIDVVREQI 130
Query: 118 KTFA--QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175
KTFA +Q S G FK++ILDEAD+MT AAQ ALRR MEK T +TRFC+I N
Sbjct: 131 KTFASTKQIFSTAPSSGSGLGAFKLIILDEADAMTSAAQMALRRIMEKYTANTRFCIIAN 190
Query: 176 YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRA 235
Y + L SRC++FRF PL E + + + E+E V A+++LV+ S GDMRRA
Sbjct: 191 YTHKLSPALLSRCTRFRFSPLKEKDIRRLVDTVIEKEEVQIQPDAIDSLVKLSKGDMRRA 250
Query: 236 ITCLQSC 242
+ LQ+C
Sbjct: 251 LNVLQAC 257
>gi|336368487|gb|EGN96830.1| hypothetical protein SERLA73DRAFT_111563 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381281|gb|EGO22433.1| hypothetical protein SERLADRAFT_357265 [Serpula lacrymans var.
lacrymans S7.9]
Length = 354
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 146/210 (69%), Gaps = 7/210 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV+ +++ + ++K + LPH LFYGPPGTGKTST++A +++G
Sbjct: 37 LPWVEKYRPVTLDDVVSHKDITTTIEKFIDKNRLPHLLFYGPPGTGKTSTILAVARRIYG 96
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR++ILELNASDDRGI V+R+++K FA +T + F + FK++ILDEAD MT
Sbjct: 97 PEYRKQILELNASDDRGIDVVREQIKQFA-ETRTLFARG------FKLIILDEADMMTQQ 149
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQAALRR +E+ TK+ RFC+ICNYV+ I + SRC++FRF PL + R+ + E E
Sbjct: 150 AQAALRRVIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPIVEVEKRIGTVIEAE 209
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSC 242
V + L++ S GDMRRA+ LQ+C
Sbjct: 210 HVKLTEDGKKALLKLSKGDMRRALNVLQAC 239
>gi|254567680|ref|XP_002490950.1| Subunit of heteropentameric Replication factor C (RF-C), which is a
DNA binding protein and ATPase t [Komagataella pastoris
GS115]
gi|238030747|emb|CAY68670.1| Subunit of heteropentameric Replication factor C (RF-C), which is a
DNA binding protein and ATPase t [Komagataella pastoris
GS115]
gi|328352517|emb|CCA38916.1| replication factor C subunit 3/5 [Komagataella pastoris CBS 7435]
Length = 332
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 146/213 (68%), Gaps = 7/213 (3%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N +PWVEKYRP ++D V Q + V ++K + LPH LFYGPPGTGKTST++A +
Sbjct: 9 NTNLPWVEKYRPSSLDYVYGQHDTVDTVRKFVQDGRLPHLLFYGPPGTGKTSTIMALAKE 68
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
++G YR +LELNASDDRGI V+RD++ FA T F+ FK++ILDEAD+M
Sbjct: 69 IYGKNYRNMVLELNASDDRGISVVRDQIVNFA-STRQIFSNG------FKLIILDEADAM 121
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+ AQ ALRR +EK TK+TRFC++ NY + L SRC++FRF+P+++ + R+ +
Sbjct: 122 TNVAQNALRRVIEKFTKNTRFCVLANYAHKLNPALLSRCTRFRFQPISQEAIQLRINDVI 181
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+QE + D AL++L++ S GDMR+A+ LQ+C
Sbjct: 182 KQEGINIDDDALQSLLKLSKGDMRKALNVLQAC 214
>gi|327401750|ref|YP_004342589.1| replication factor C small subunit [Archaeoglobus veneficus SNP6]
gi|327317258|gb|AEA47874.1| Replication factor C small subunit [Archaeoglobus veneficus SNP6]
Length = 322
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/290 (42%), Positives = 170/290 (58%), Gaps = 16/290 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+T+ +V+ Q+EV+ L + ++PH LF GPPGTGKT++ IA LFG+
Sbjct: 8 WVEKYRPRTLKEVVGQEEVIQRLMGYVERKNIPHLLFAGPPGTGKTASAIALARDLFGEN 67
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R+ +E+NASD+RGI V+R K+K FA+ G PFKI+ LDEAD++T AQ
Sbjct: 68 WRDNFIEMNASDERGIDVVRHKIKEFARTAPIG-------DAPFKIIFLDEADALTPDAQ 120
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTME +K RF L CNYVS II+P+ SRC+ F+F+P+ M RL ICE E V
Sbjct: 121 AALRRTMEMYSKICRFILSCNYVSRIIEPIQSRCAVFKFRPVPPEAMRKRLLEICENEGV 180
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
LE L+ S GD R+AI LQ A L G+ + E + ++T + LL+
Sbjct: 181 KITEDGLEALIYVSNGDFRKAINALQGAAAL--GKVVDAEAIYQITATARPEELANLLET 238
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQ-FHDIVMLASSLSDKQKALF 319
F ++ L++E S + Q F +I L+S + +K K L
Sbjct: 239 ALEGKFMEARSILDKLMIEYGMSGEDVVSQLFREI--LSSGMDEKMKVLL 286
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 7/125 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
LE L+ S GD R+AI LQ A L G+ + E + ++T + LL+
Sbjct: 186 GLEALIYVSNGDFRKAINALQGAAAL--GKVVDAEAIYQITATARPEELANLLETALEGK 243
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F ++ L++E S + Q ++S S + +K K L+++KL E + RL +GA
Sbjct: 244 FMEARSILDKLMIEYGMSGEDVVSQLFREILS-SGMDEKMKVLLIDKLGEIDFRLTEGAH 302
Query: 437 EYIQI 441
E IQ+
Sbjct: 303 ERIQL 307
>gi|401410508|ref|XP_003884702.1| hypothetical protein NCLIV_050990 [Neospora caninum Liverpool]
gi|325119120|emb|CBZ54672.1| hypothetical protein NCLIV_050990 [Neospora caninum Liverpool]
Length = 387
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 121/318 (38%), Positives = 181/318 (56%), Gaps = 34/318 (10%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPWVEKYRP+ ++++ Q+E +L++ L ++PH LFYGPPGTGKTS +A +LFG
Sbjct: 34 VPWVEKYRPRRVEEMAHQEEPKKMLRRILETGNMPHLLFYGPPGTGKTSAALALVRELFG 93
Query: 93 -DMYRERILELNASDDRG---------------------------IQVIRDKVKTFAQ-Q 123
+ + R+LELNASDDRG I+V+R+++K + +
Sbjct: 94 REEAKNRLLELNASDDRGKRKPNGVCLGSGETVRRGAPIKQDRNSIKVVRERIKQYTKTN 153
Query: 124 TASG--FNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCII 181
A G + G+ P +KIVILDEAD MT AQ+ALRR ME +++TRF +ICNYV II
Sbjct: 154 IAKGKINPETGREMPAWKIVILDEADMMTQDAQSALRRIMEAFSRTTRFIIICNYVHKII 213
Query: 182 QPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
P+ SRCS RF+P+A R+++ICE E + A++ L+ S GD+RRA+T LQS
Sbjct: 214 DPIFSRCSPHRFEPVAREAQKARIRHICESEGLAVTTGAVDALLRISQGDLRRAVTLLQS 273
Query: 242 CARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV--DSFQVLEKYIEDLILEAYSATQLFD 299
A + + + + +LEV G P + L+ S ++++I + + L
Sbjct: 274 AASIY-DDNLTEDAILEVAGQPPARIVTDFLRACQASPDAASSEVDNVISQGWDVCLLLQ 332
Query: 300 QFHDIVMLASSLSDKQKA 317
+ V+++ L D QKA
Sbjct: 333 EMIRQVVISPHLKDLQKA 350
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 3/126 (2%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV--DSF 378
A++ L+ S GD+RRA+T LQS A + + + + +LEV G P + L+ S
Sbjct: 252 AVDALLRISQGDLRRAVTLLQSAASIYD-DNLTEDAILEVAGQPPARIVTDFLRACQASP 310
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
++++I + + L + V+ + L D QKA ++ +A+ + GAS Y
Sbjct: 311 DAASSEVDNVISQGWDVCLLLQEMIRQVVISPHLKDLQKARVVNDIAQKEYAVFQGASPY 370
Query: 439 IQILDL 444
+Q+L L
Sbjct: 371 LQLLSL 376
>gi|357137885|ref|XP_003570529.1| PREDICTED: replication factor C subunit 5-like [Brachypodium
distachyon]
Length = 358
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 125/298 (41%), Positives = 170/298 (57%), Gaps = 13/298 (4%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
AP SK S + PWVEKYRP+++ DV +++V + + LPH L YG
Sbjct: 16 APPHSKGKAPLSAAAAVRSSPWVEKYRPQSLADVAAHRDIVDTIDRLTDENRLPHLLLYG 75
Query: 74 PPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133
PPGTGKTST++A +++G Y ILELNASD+RGI V+R +++ FA + F
Sbjct: 76 PPGTGKTSTILAVARKIYGSQYGNMILELNASDERGIGVVRQQIQDFASAHSLSFGAK-- 133
Query: 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
P K+V+LDEAD+MT AQ ALRR +EK T+STRF LICN+V+ II L SRC++FRF
Sbjct: 134 --PAVKLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRF 191
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253
PL + + RLQ+I + E + D L LV S GDMR+A+ LQS + I
Sbjct: 192 APLDGSHVSERLQHIIKSEGLDVDEGGLTALVRLSSGDMRKALNILQSTH--MASQQITE 249
Query: 254 EDVLEVTG-VIPKPWIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVML 307
E V TG +PK IE++ L + F KYI D+ + L D ++ M
Sbjct: 250 EAVYLCTGNPMPKD-IEQIAFWLLNEPFSTSFKYISDMKMR--KGLALIDIIREVTMF 304
>gi|313225768|emb|CBY07242.1| unnamed protein product [Oikopleura dioica]
Length = 329
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/263 (43%), Positives = 168/263 (63%), Gaps = 15/263 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD+I E++S +KK + LPH LFYGPPGTGKTST++A +L+G
Sbjct: 8 LPWVEKYRPNKLDDLISHTEIISTIKKFIENEQLPHLLFYGPPGTGKTSTILAVAKELYG 67
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++ +LELNASD RGI V+R+++ FA + C FK++ILDE D+MT
Sbjct: 68 AKNLKKMVLELNASDARGIDVVRNEILNFASSRSLH-------CKGFKVIILDECDAMTR 120
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQAALRR MEK TK+ RFCLICNY+ +I + SRC++FRF PL+ M+ R+ ++ E+
Sbjct: 121 DAQAALRRVMEKFTKNVRFCLICNYLGKLIPAIQSRCTRFRFAPLSVEQMMPRINHVVEE 180
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL 271
E + D ++ L++ + GDMRR++ LQ A + ++ V +VTG + I ++
Sbjct: 181 EGIDIDQNGMDLLLKMAEGDMRRSLNILQ--ASHLAFNKVTDDIVYKVTGRPRRNDIRRM 238
Query: 272 LKVDSFQVLEKY----IEDLILE 290
++ Q + KY IE+L+LE
Sbjct: 239 MEWLLNQDI-KYCMDSIEELMLE 260
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 11/128 (8%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQ 379
++ L++ + GDMRR++ LQ A + ++ V +VTG I ++++ Q
Sbjct: 188 NGMDLLLKMAEGDMRRSLNILQ--ASHLAFNKVTDDIVYKVTGRPRRNDIRRMMEWLLNQ 245
Query: 380 VLEKY----IEDLILEAYSATQ--LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQD 433
+ KY IE+L+LE A L D + +I + L D KA IL LA+ RL
Sbjct: 246 DI-KYCMDSIEELMLENGIALNDVLTDLYEEI--CEADLPDIPKAEILSALADIEYRLNI 302
Query: 434 GASEYIQI 441
GA+E IQ+
Sbjct: 303 GATEKIQL 310
>gi|126459198|ref|YP_001055476.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
gi|126248919|gb|ABO08010.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
Length = 324
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 154/239 (64%), Gaps = 9/239 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ ++V++ +EV + L++ + +LPH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGIGVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NYVS II+P+ SR RF PL + +++RL++I E E V
Sbjct: 119 QALRRIMEIYAQNTRFILLANYVSNIIEPIQSRVVMIRFNPLPKEAVISRLRFIAENEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK 273
ALE + E + GDMR+AI LQ A + + E+V + G++ + ++L+
Sbjct: 179 KVSDDALEAIYEFTQGDMRKAINALQVAASV--SREVTEEEVAKALGMVSPRLLREVLQ 235
>gi|171186449|ref|YP_001795368.1| replication factor C small subunit [Pyrobaculum neutrophilum
V24Sta]
gi|170935661|gb|ACB40922.1| Replication factor C [Pyrobaculum neutrophilum V24Sta]
Length = 328
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 141/210 (67%), Gaps = 10/210 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV S L++ + ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC-PPFKIVILDEADSMTHAA 153
+RE LELNASD+RGI VIR++VK FA+ P PFK+VILDEAD+MT A
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTA---------PIKAPFKLVILDEADNMTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME ++TRF L+ NYVS II P+ SRC+ FRF P+ + M RL+YI ++E
Sbjct: 117 QQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKYIAKREG 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCA 243
+ AL+ + E S GDMR+AI LQ A
Sbjct: 177 IEVGEDALDLIYELSEGDMRKAINLLQVAA 206
>gi|315049065|ref|XP_003173907.1| replication factor C protein subunit 3 [Arthroderma gypseum CBS
118893]
gi|311341874|gb|EFR01077.1| replication factor C protein subunit 3 [Arthroderma gypseum CBS
118893]
Length = 397
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 137/361 (37%), Positives = 191/361 (52%), Gaps = 61/361 (16%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV Q++++ + + + LPH L YGPPGTGKTST++A +++G
Sbjct: 45 LPWVEKYRPDTLDDVSGHQDIIATINRFVESNRLPHLLLYGPPGTGKTSTILALARRIYG 104
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA--QQTASGFNQDGKPCPPFKIVILDEADSM 149
R+ +LELNASDDRGI V+R+++KTFA +Q S G FK++ILDEAD+M
Sbjct: 105 SKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADAM 164
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AAQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + + +
Sbjct: 165 TSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIKRLVDTVI 224
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPK 265
E+E V A+++LV+ S GDMRRA+ LQ+C L +G +E P+
Sbjct: 225 EKEQVQIQPDAIDSLVKLSKGDMRRALNVLQACHASSMPLPSKKGDTSEQ--------PQ 276
Query: 266 PWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETL 325
D + E+ I I + A DI M+ LETL
Sbjct: 277 ---------DRETITEETIYTCIAAPHPA--------DIKMI--------------LETL 305
Query: 326 VETSGGDMRRAITCLQSCARLKGGEGIVNEDV----------LEVTGVIPNPWIEKLLKV 375
+ TS +CL + LK +G+ D+ LEV + WIE L V
Sbjct: 306 LSTSD-----VTSCLNTVQTLKSNKGLALADIISALSTELQSLEVPAQVRVSWIEGLADV 360
Query: 376 D 376
+
Sbjct: 361 E 361
>gi|326475565|gb|EGD99574.1| DNA replication factor C subunit Rfc3 [Trichophyton tonsurans CBS
112818]
gi|326483166|gb|EGE07176.1| DNA replication factor C subunit Rfc3 [Trichophyton equinum CBS
127.97]
Length = 397
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 154/247 (62%), Gaps = 17/247 (6%)
Query: 13 DAPSSSKTSVSTSGKTRNK--------PV------PWVEKYRPKTIDDVIEQQEVVSVLK 58
DAP + T+ T+ T K PV PWVEKYRP T+DDV Q++++ +
Sbjct: 11 DAPPARDTAAFTADPTDVKGKRIVADLPVEAGDNLPWVEKYRPDTLDDVSGHQDIIATIN 70
Query: 59 KCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKV 117
+ + LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++
Sbjct: 71 RFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRGIDVVREQI 130
Query: 118 KTFA--QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175
KTFA +Q S G FK++ILDEAD+MT AAQ ALRR MEK T +TRFC+I N
Sbjct: 131 KTFASTKQIFSTAPSSGSGLGAFKLIILDEADAMTSAAQMALRRIMEKYTANTRFCIIAN 190
Query: 176 YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRA 235
Y + L SRC++FRF PL E + + + E+E V A+++LV S GDMRRA
Sbjct: 191 YTHKLSPALLSRCTRFRFSPLKEKDIRRLVDTVIEKEEVQIQPDAVDSLVTLSKGDMRRA 250
Query: 236 ITCLQSC 242
+ LQ+C
Sbjct: 251 LNVLQAC 257
>gi|156384148|ref|XP_001633193.1| predicted protein [Nematostella vectensis]
gi|156220260|gb|EDO41130.1| predicted protein [Nematostella vectensis]
Length = 329
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 157/237 (66%), Gaps = 11/237 (4%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
+ +PWVEKYRPK +DD+I ++++ +++ ++ LPH LFYGPPGTGKTST++A QL
Sbjct: 9 RNLPWVEKYRPKCLDDLISHTDIINTIQRFINEERLPHLLFYGPPGTGKTSTILAVAKQL 68
Query: 91 FGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
+ D + +LELNASDDRGI ++R + +FA T + F FK+VILDEAD+M
Sbjct: 69 YPDKQFGSMVLELNASDDRGIGIVRGDILSFAS-TRTIFKSG------FKLVILDEADAM 121
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ ALRR MEK T++TRFCLICNY++ II L SRC++FRF PL+ + ML RL+++
Sbjct: 122 TQDAQNALRRVMEKFTENTRFCLICNYLTKIIPALQSRCTRFRFGPLSVDQMLPRLEHVI 181
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP 266
E E V ++L+ + GDMR+ + LQS + +VNED + + P+P
Sbjct: 182 ESERVNVTDDGRKSLLRLAQGDMRKVLNILQSTSM---AYSVVNEDHVYLCTGQPQP 235
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 12/131 (9%)
Query: 323 ETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----WIEKLLKVDS 377
++L+ + GDMR+ + LQS + +VNED + + P P ++ +L D
Sbjct: 194 KSLLRLAQGDMRKVLNILQSTSM---AYSVVNEDHVYLCTGQPQPTDIGNIVDWMLNKDF 250
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
++ L+ + + ++ H V K + +L+K+AE RL G SE
Sbjct: 251 TTAYTNILKLKTLKGLALQDILEETHSYVHRVD-FPAKIRIHLLDKMAEVEYRLASGTSE 309
Query: 438 YIQILDLGSIV 448
IQ LGS++
Sbjct: 310 KIQ---LGSMI 317
>gi|255710491|ref|XP_002551529.1| KLTH0A01540p [Lachancea thermotolerans]
gi|238932906|emb|CAR21087.1| KLTH0A01540p [Lachancea thermotolerans CBS 6340]
Length = 328
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 115/250 (46%), Positives = 161/250 (64%), Gaps = 15/250 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PW+EKYRP+T+DDV Q+E+V ++K + LPH LFYGPPGTGKTS ++A +++G
Sbjct: 8 LPWIEKYRPQTLDDVYGQREIVGTVRKFVKEGRLPHLLFYGPPGTGKTSMIVALSREIYG 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR +LELNASDDRGI V+R+++K FA T F++ FK++ILDEAD+MT+A
Sbjct: 68 TNYRNMVLELNASDDRGIDVVRNQIKEFA-STRQIFSKG------FKLIILDEADAMTNA 120
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK TK+TRFC++ NY + L SRC++FRF+PL + + R+ + E
Sbjct: 121 AQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPTDAIEKRVNKVLILE 180
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQ-SCARLKGGEGIVNED-VLEVTGVIPKPW--- 267
++ +A L+ S GDMRRA+ LQ S A L + V ED + E G P P
Sbjct: 181 NLKLSREAFTALLRLSKGDMRRALNVLQASKATLDDPDAEVTEDTIYECIGA-PHPQDIE 239
Query: 268 --IEKLLKVD 275
+E +LK D
Sbjct: 240 TALESMLKDD 249
>gi|260791339|ref|XP_002590697.1| hypothetical protein BRAFLDRAFT_125553 [Branchiostoma floridae]
gi|229275893|gb|EEN46708.1| hypothetical protein BRAFLDRAFT_125553 [Branchiostoma floridae]
Length = 329
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 113/239 (47%), Positives = 158/239 (66%), Gaps = 12/239 (5%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
SG ++ +PWVEKYRPK + ++I Q+++S +++ L LPH LFYGPPGTGKTST++
Sbjct: 2 SGGGEHRNLPWVEKYRPKEMTELISHQDIISTIQRFLDEDRLPHLLFYGPPGTGKTSTIL 61
Query: 85 AACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A +L+ D + +LELNASDDRGI ++R V FA T + F + FK+VIL
Sbjct: 62 ACARRLYADREFNSMVLELNASDDRGIGIVRGPVLQFAS-TRTIFKRG------FKLVIL 114
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT AQ ALRR MEK T++TRFCLICNY+S II + SRC++FRF PL + ML
Sbjct: 115 DEADAMTGDAQNALRRVMEKFTENTRFCLICNYLSKIIPAIQSRCTRFRFGPLGVDQMLP 174
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTG 261
RL+++ ++E V + +++ + GDMRR + LQS + +V+ED V VTG
Sbjct: 175 RLEHVIQEEKVDVTDDGKKAILQLANGDMRRVLNILQSTSM---AHDVVDEDNVYLVTG 230
>gi|345329292|ref|XP_001513440.2| PREDICTED: replication factor C subunit 4-like [Ornithorhynchus
anatinus]
Length = 287
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 109/191 (57%), Positives = 138/191 (72%), Gaps = 3/191 (1%)
Query: 132 GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
GKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICNYVS II+PLTSRCSKF
Sbjct: 61 GKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKF 120
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
RFKPL++ RL I E+E V + + LV+ S GD+R+AIT LQS RL GG+ +
Sbjct: 121 RFKPLSDKIQHQRLLDISEKEKVKISSEGIAYLVQVSEGDLRKAITFLQSATRLTGGKEV 180
Query: 252 VNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLA 308
+ + E+ GV+P I+ + SF+ LE ++DLI E ++ATQL +Q HD+V+
Sbjct: 181 TEKVITEIAGVVPAETIDGIFSACQSGSFEKLEAVVKDLINEGHAATQLVNQLHDVVVEK 240
Query: 309 SSLSDKQKALF 319
LSDKQK++
Sbjct: 241 DHLSDKQKSVI 251
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 109/192 (56%), Gaps = 9/192 (4%)
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLF------DQFHDIVMLASSLSDKQKALFKA 321
+EK K F ++ Y+ +I S F D+ +L S +K K +
Sbjct: 90 MEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQHQRLLDISEKEKVKISSEG 149
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSF 378
+ LV+ S GD+R+AIT LQS RL GG+ + + + E+ GV+P I+ + SF
Sbjct: 150 IAYLVQVSEGDLRKAITFLQSATRLTGGKEVTEKVITEIAGVVPAETIDGIFSACQSGSF 209
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
+ LE ++DLI E ++ATQL +Q HD+V+ LSDKQK++I EKLAE + L DGA E+
Sbjct: 210 EKLEAVVKDLINEGHAATQLVNQLHDVVVEKDHLSDKQKSVITEKLAEVDKCLADGADEH 269
Query: 439 IQILDLGSIVIK 450
+Q++ L + V++
Sbjct: 270 LQLISLCATVMQ 281
>gi|448417391|ref|ZP_21579327.1| replication factor C small subunit [Halosarcina pallida JCM 14848]
gi|445677879|gb|ELZ30375.1| replication factor C small subunit [Halosarcina pallida JCM 14848]
Length = 329
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 112/272 (41%), Positives = 167/272 (61%), Gaps = 14/272 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T++DV Q+++V L+ + DLPH LF GP G GKT++ A ++GD
Sbjct: 16 WIEKYRPQTLEDVYGQEDIVDRLRSYIEQDDLPHLLFAGPAGVGKTTSATAIARAVYGDD 75
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD+RGI V+RD++K FA+ + G++ ++I+ LDEADS+T AQ
Sbjct: 76 WRGNFLELNASDERGIDVVRDRIKNFARASFGGYD--------YRIIFLDEADSLTSDAQ 127
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL ++ + +++ I E E +
Sbjct: 128 SALRRTMEQFSDNTRFVLSCNYSSKIIDPIQSRCAVFRFSPLGDDAVRKQVEAIAETEGI 187
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK- 273
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++
Sbjct: 188 ELTEDGLDALVYAAGGDMRRAINSLQAAA--TTGEVVDEEAVYLITSTARPEDIEEMVQS 245
Query: 274 -VDS-FQVLEKYIEDLILE-AYSATQLFDQFH 302
+D F +E L+++ + + DQ H
Sbjct: 246 AIDGEFLAARSKLETLLVDTGMAGGDIIDQLH 277
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDS- 377
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++ +D
Sbjct: 193 GLDALVYAAGGDMRRAINSLQAAA--TTGEVVDEEAVYLITSTARPEDIEEMVQSAIDGE 250
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F +E L+++ + + DQ H V L ++ ++E++ E + R+ +GA+
Sbjct: 251 FLAARSKLETLLVDTGMAGGDIIDQLHRSVWE-FDLDERATVRLMERIGEADYRITEGAN 309
Query: 437 EYIQI 441
E +Q+
Sbjct: 310 EQVQL 314
>gi|393240465|gb|EJD47991.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 348
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 156/238 (65%), Gaps = 16/238 (6%)
Query: 13 DAPSSSKTSVSTSGKTRNKP--------VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGA 64
DAP+ ++ GK + P +PWVEKYRP + DV+ + + ++ +
Sbjct: 3 DAPAFP-SAAKGKGKAVDPPKPAYDPENLPWVEKYRPVALSDVVSHDGITTTIENFIEKN 61
Query: 65 DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQT 124
LPH LFYGPPGTGKTST++A +++G+ Y+ +ILELNASDDRGI V+R+++K FA+ T
Sbjct: 62 RLPHLLFYGPPGTGKTSTILAVARRIYGNDYKRQILELNASDDRGIDVVREQIKQFAE-T 120
Query: 125 ASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPL 184
+ F + FK++ILDEAD MT AAQ+ALRR +E+ TK+ RFC+ICNYV+ I +
Sbjct: 121 RTLFRRS------FKLIILDEADMMTQAAQSALRRIIEQYTKNVRFCIICNYVNKIAPAI 174
Query: 185 TSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
SRC++FRF PL + R++++ E E V + L+ L++ S GDMRRA+ LQ+C
Sbjct: 175 QSRCTRFRFSPLPIQDVERRVRHVIEAEDVKIEPDGLDALLKLSKGDMRRALNILQAC 232
>gi|429216858|ref|YP_007174848.1| DNA polymerase III, subunit gamma/tau [Caldisphaera lagunensis DSM
15908]
gi|429133387|gb|AFZ70399.1| DNA polymerase III, gamma/tau subunit [Caldisphaera lagunensis DSM
15908]
Length = 333
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 122/276 (44%), Positives = 166/276 (60%), Gaps = 14/276 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP+T+ D+I QQ++ + L K + ++PH LF GPPGTGKT+ A H L+G+
Sbjct: 17 WTEKYRPRTLKDIINQQDITTRLMKFVQEKNMPHLLFAGPPGTGKTTAAHALAHDLYGES 76
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
Y++ +LELNASD+RGI IR+KVK FA+ P PFKIV+LDEAD+MT AQ
Sbjct: 77 YQQFMLELNASDERGIDTIREKVKEFARSKTP-------PEIPFKIVLLDEADNMTSDAQ 129
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME + STRF L NY S II P+ SRC+ FRF L + ++ RL+YI ++E V
Sbjct: 130 QALRRLMELYSASTRFILAANYPSKIIDPIQSRCAFFRFTSLKKEDVIDRLKYIADKEGV 189
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI-PK---PWIEK 270
+ AL+ + E S GDMR+AI LQ+ A L + +E V +V G+ PK IE
Sbjct: 190 DYEEDALDIIFEISEGDMRKAINILQASAYLG---KVTSELVFKVVGMARPKDITDMIET 246
Query: 271 LLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
LK + + E + +I S + Q H +M
Sbjct: 247 ALKGNFIEAREILRKVMIEYGLSGEDVVKQIHREIM 282
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 10/146 (6%)
Query: 303 DIVMLASSLSDKQKALFK--ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 360
D++ ++DK+ ++ AL+ + E S GDMR+AI LQ+ A L + +E V +V
Sbjct: 175 DVIDRLKYIADKEGVDYEEDALDIIFEISEGDMRKAINILQASAYLG---KVTSELVFKV 231
Query: 361 TGVIP----NPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-SLSDK 415
G+ IE LK + + E + +I S + Q H +M ++D+
Sbjct: 232 VGMARPKDITDMIETALKGNFIEAREILRKVMIEYGLSGEDVVKQIHREIMGPDIKINDE 291
Query: 416 QKALILEKLAECNARLQDGASEYIQI 441
+ LI + L E + R+ +G+ E IQ+
Sbjct: 292 LRVLIADYLGEIHFRISEGSDEDIQL 317
>gi|71028744|ref|XP_764015.1| replication factor C subunit 3 [Theileria parva strain Muguga]
gi|68350969|gb|EAN31732.1| replication factor C subunit 3, putative [Theileria parva]
Length = 347
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 110/247 (44%), Positives = 160/247 (64%), Gaps = 8/247 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+ D+I ++++S L LPH LF+GPPG+GKTST++A L+G
Sbjct: 8 PWVEKYRPETLQDIISHEDIMSTLMIFAEKGQLPHLLFHGPPGSGKTSTILAISRYLYGS 67
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ----DGKPCPPFKIVILDEADSM 149
+LELNASD+RGI +RD++K F++ T++ F D P K++ILDEAD M
Sbjct: 68 QRNGFVLELNASDERGIDTVRDQIKAFSE-TSNTFTSTMPVDDPPRTNLKLIILDEADQM 126
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+AAQ ALRR ME + + RFCLICN+++ II P+ SRC+ FRF+PL + + R++ I
Sbjct: 127 TNAAQNALRRIMEIYSNNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKSDVVRERIREIA 186
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQ--SCARLKGGEGIVNEDVLEVTGVIPKPW 267
+ E+V AL+ LVE GDMRR + CLQ S + KG + ++ +++ T +P+
Sbjct: 187 KLENVKITDCALDALVEIGQGDMRRVLNCLQVTSMSHAKGADFTIDANLILATSGLPQSS 246
Query: 268 -IEKLLK 273
I+ LLK
Sbjct: 247 EIDHLLK 253
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 321 ALETLVETSGGDMRRAITCLQ--SCARLKGGEGIVNEDVLEVTGVIP-NPWIEKLLKV-- 375
AL+ LVE GDMRR + CLQ S + KG + ++ +++ T +P + I+ LLK
Sbjct: 197 ALDALVEIGQGDMRRVLNCLQVTSMSHAKGADFTIDANLILATSGLPQSSEIDHLLKSLM 256
Query: 376 -DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALI--LEKLAECNARLQ 432
+SF+ E E +L L D + S + ++ L +LA+ RL
Sbjct: 257 QNSFK--ECIYELSVLHHKKGYSLEDIVRLLYKSIVKIDWPNVPIVQLLIRLADVEERLA 314
Query: 433 DGASEYIQILDLGS 446
GA+ IQI + S
Sbjct: 315 AGANSNIQIASIVS 328
>gi|358059664|dbj|GAA94596.1| hypothetical protein E5Q_01248 [Mixia osmundae IAM 14324]
Length = 414
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 114/258 (44%), Positives = 154/258 (59%), Gaps = 39/258 (15%)
Query: 13 DAPSSSKTSVSTSGKTRNKPV--------PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGA 64
DAP + GK + +PV PWVEKYRP T+DDV+ +++VS + K +S
Sbjct: 51 DAPPPLAYGID-KGKAKQEPVEAHELDSLPWVEKYRPATLDDVVSHKDIVSTIDKFISLN 109
Query: 65 DLPHFLFYGPPGTGKTSTMIAACHQLFGDM-----------------YRERILELNASDD 107
LPH LFYGPPGTGKTST++A +++G R +LELNASDD
Sbjct: 110 RLPHLLFYGPPGTGKTSTILAVARKIYGGTGNSIRGGVSGKGKEGSSMRNNVLELNASDD 169
Query: 108 RGIQVIRDKVKTFAQQT---ASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE 164
RGI V+RD++K FA +SG+ K++ILDEAD MT AQ ALRR +E+
Sbjct: 170 RGIDVVRDQIKNFASTRMIFSSGY----------KLIILDEADMMTTTAQNALRRVIEQY 219
Query: 165 TKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETL 224
TK+ RFC+ICNYV+ II + SRC++FRF PL + R+Q++ + ESV E L
Sbjct: 220 TKNVRFCIICNYVNRIIPAVQSRCTRFRFGPLETTEVDRRIQHVVDAESVNLTQDGREAL 279
Query: 225 VETSGGDMRRAITCLQSC 242
++ S GDMRRA+ LQ+C
Sbjct: 280 LKLSKGDMRRALNVLQAC 297
>gi|194761822|ref|XP_001963122.1| GF15785 [Drosophila ananassae]
gi|190616819|gb|EDV32343.1| GF15785 [Drosophila ananassae]
Length = 332
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/285 (42%), Positives = 172/285 (60%), Gaps = 25/285 (8%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD+I +E++S + + +S LPH LFYGPPGTGKTST++A QL+
Sbjct: 11 MPWVEKYRPSGLDDLISHEEIISTISRFISRKQLPHLLFYGPPGTGKTSTILACARQLYS 70
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++ +LELNASDDRGI ++R ++ FA T + F C FK++ILDEAD+MT+
Sbjct: 71 PQQFKSMVLELNASDDRGIGIVRGQILNFAS-TRTIF------CDTFKLIILDEADAMTN 123
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T + RFC+ICNY+S II L SRC++FRF PL+ + M+ RL+ I +
Sbjct: 124 DAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSPDQMMPRLEKIIDA 183
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL 271
E+V L+ + GDMR+ + LQS + + + ++V G + IE++
Sbjct: 184 EAVQITEDGKRALLTLAKGDMRKVLNVLQST--VMAFDKVNEDNVYTCVGYPLRQDIEQI 241
Query: 272 LKV--------DSFQVLE--KYIEDLILEAYSATQLFDQFHDIVM 306
LK DSF+ +E KY L LE + + H VM
Sbjct: 242 LKALLSGNSVEDSFKTVENAKYARGLALE-----DILTELHLFVM 281
>gi|430814133|emb|CCJ28598.1| unnamed protein product [Pneumocystis jirovecii]
Length = 350
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 106/255 (41%), Positives = 162/255 (63%), Gaps = 10/255 (3%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
SK + + K +PWVEKYRP+ + +++ Q+++ +++ + +PH LFYGPPGT
Sbjct: 24 SKKILESDTKHDGSTLPWVEKYRPEDLKEIVSHQDIILTIEEFIKKNRIPHLLFYGPPGT 83
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKTST++A +++G +R ++LELNASD+RGI V+R+++K FA T FN
Sbjct: 84 GKTSTILACAKKIYGPKFRNQLLELNASDERGIDVVREQIKNFA-STKQIFNSG------ 136
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
FK+VILDEAD+MT AAQ ALRR +EK TK+ RFC+ICNYV+ I + SRC++FRF+PL+
Sbjct: 137 FKLVILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYVNKISLAIQSRCTRFRFQPLS 196
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
+ +L Y+ + E++ K LV+ + GDMR+ + LQ+C ++ED +
Sbjct: 197 SKEICLKLDYVIKNENINISEKGKAELVKLADGDMRKGLNILQAC---HAAYDFIDEDAV 253
Query: 258 EVTGVIPKPWIEKLL 272
P P I +L+
Sbjct: 254 YNCVGNPHPEIIELI 268
>gi|169849253|ref|XP_001831330.1| DNA replication factor [Coprinopsis cinerea okayama7#130]
gi|116507598|gb|EAU90493.1| DNA replication factor [Coprinopsis cinerea okayama7#130]
Length = 347
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 116/276 (42%), Positives = 175/276 (63%), Gaps = 27/276 (9%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +++DV+ Q++ + + + + LPH LFYGPPGTGKTST++A +++G
Sbjct: 28 LPWVEKYRPVSLEDVVSHQDITTTIDRFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYG 87
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y+++ILELNASDDRGI V+R++VK FA +T + F++ +K++ILDEAD MT
Sbjct: 88 SDYKKQILELNASDDRGIDVVREQVKQFA-ETRTLFSKG------YKLIILDEADMMTQQ 140
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQAALRR +E+ TK+ RFC+ICNYV+ I + SRC++FRF PL + ++ + E E
Sbjct: 141 AQAALRRVIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPIAEVEKQVNRVVEAE 200
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE-DVLEVTGVIPKPW-IEK 270
+V + + L++ S GDMRRA+ LQ+C +++E +V TG P P IE
Sbjct: 201 NVQLTPEGKQALLKLSKGDMRRALNVLQAC---HAAYDVISESEVYNCTGH-PHPQDIEA 256
Query: 271 LLK-------VDSFQVLEKY-------IEDLILEAY 292
++ S+Q++ K ++DLI AY
Sbjct: 257 IVNSMLSDEFTTSYQMISKLKTERGLALQDLIAGAY 292
>gi|254579519|ref|XP_002495745.1| ZYRO0C02090p [Zygosaccharomyces rouxii]
gi|238938636|emb|CAR26812.1| ZYRO0C02090p [Zygosaccharomyces rouxii]
Length = 338
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 157/238 (65%), Gaps = 14/238 (5%)
Query: 24 TSGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
T G +N + +PWVEKYRP+++DDV Q EV++ ++K L LPH LFYGPPGTGKTS+
Sbjct: 2 TIGNVKNMENLPWVEKYRPESLDDVYGQTEVITTIRKFLETGKLPHLLFYGPPGTGKTSS 61
Query: 83 MIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
+IA +++G Y +LELNASDDRGI V+R+++K FA T F++ FK++I
Sbjct: 62 IIALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKLII 114
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT+AAQ ALRR +E+ TK+TRFC++ NY + L SRC++FRF+PL +
Sbjct: 115 LDEADAMTNAAQNALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPREAIQ 174
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVT 260
R+ + +E + A L++ S GDMRR + LQ+C + ++++ +E+T
Sbjct: 175 RRISNVLVREQLQMTESAENALLDLSRGDMRRVLNVLQAC------KAVIDQPNVEIT 226
>gi|219363377|ref|NP_001136580.1| replication factor C subunit 3 [Zea mays]
gi|194696262|gb|ACF82215.1| unknown [Zea mays]
gi|413939151|gb|AFW73702.1| replication factor C subunit 3 [Zea mays]
Length = 362
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 118/261 (45%), Positives = 160/261 (61%), Gaps = 11/261 (4%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
+ PWVEKYRP+++ DV +++V + + + LPH L YGPPGTGKTST++A +L
Sbjct: 37 RAAPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKL 96
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+G Y ILELNASD+RGI V+R +++ FA + F P K+V+LDEAD+MT
Sbjct: 97 YGSQYSNMILELNASDERGIDVVRQQIQDFAGARSLSFGAR----PSVKLVLLDEADAMT 152
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRR +EK T+STRF LICN+V+ II L SRC++FRF PL + + RLQ+I +
Sbjct: 153 KDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHIIK 212
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG-VIPKPWIE 269
E + D L LV S GDMR+A+ LQS + I E V TG +PK IE
Sbjct: 213 SEGLSVDDGGLTALVRLSNGDMRKALNILQSTH--MASQQITEEAVYLCTGNPMPKD-IE 269
Query: 270 KL---LKVDSFQVLEKYIEDL 287
++ L + F KYI D+
Sbjct: 270 QIAFWLLNEPFSTSFKYISDM 290
>gi|18312140|ref|NP_558807.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
gi|42559513|sp|Q8ZYK4.1|RFCS1_PYRAE RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|18159573|gb|AAL62989.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
Length = 329
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 102/209 (48%), Positives = 139/209 (66%), Gaps = 7/209 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV + L++ + ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NYVS II P+ SRC+ FRF P+ + M RL++I + E V
Sbjct: 119 QALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKFIAKNEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCA 243
A+ + E S GDMR+AI LQ A
Sbjct: 179 ELREDAINMIYELSEGDMRKAINLLQVAA 207
>gi|195628076|gb|ACG35868.1| replication factor C subunit 3 [Zea mays]
Length = 362
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 118/261 (45%), Positives = 160/261 (61%), Gaps = 11/261 (4%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
+ PWVEKYRP+++ DV +++V + + + LPH L YGPPGTGKTST++A +L
Sbjct: 37 RAAPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKL 96
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+G Y ILELNASD+RGI V+R +++ FA + F P K+V+LDEAD+MT
Sbjct: 97 YGSQYSNMILELNASDERGIDVVRQQIQDFAGARSLSFGAR----PSVKLVLLDEADAMT 152
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRR +EK T+STRF LICN+V+ II L SRC++FRF PL + + RLQ+I +
Sbjct: 153 KDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHIIK 212
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG-VIPKPWIE 269
E + D L LV S GDMR+A+ LQS + I E V TG +PK IE
Sbjct: 213 SEGLSVDDGGLTALVRLSNGDMRKALNILQSTH--MASQQITEEAVYLCTGNPMPKD-IE 269
Query: 270 KL---LKVDSFQVLEKYIEDL 287
++ L + F KYI D+
Sbjct: 270 QIAFWLLNEPFSTSFKYISDM 290
>gi|169771859|ref|XP_001820399.1| replication factor C subunit 3 [Aspergillus oryzae RIB40]
gi|83768258|dbj|BAE58397.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391874706|gb|EIT83551.1| replication factor C, subunit RFC5 [Aspergillus oryzae 3.042]
Length = 398
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 116/252 (46%), Positives = 159/252 (63%), Gaps = 26/252 (10%)
Query: 13 DAPSSSK--TSVSTSGKTR----NKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKC 60
DAPS S S +TSGK + + PV PWVEKYRP T+DDV Q++++ + +
Sbjct: 11 DAPSKSIQFNSDNTSGKAKRVASDLPVEAQDNLPWVEKYRPNTLDDVSGHQDILATINRF 70
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKT 119
+ LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++KT
Sbjct: 71 VDANRLPHLLLYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRGIDVVREQIKT 130
Query: 120 FAQ---------QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRF 170
FA Q SG G +K++ILDEAD+MT AQ ALRR MEK T +TRF
Sbjct: 131 FASTKQIFSMAPQPTSG----GSSLASYKLIILDEADAMTATAQMALRRIMEKYTANTRF 186
Query: 171 CLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG 230
C+I NY + L SRC++FRF PL E + + + + E+E V +A+++LV+ S G
Sbjct: 187 CIIANYTHKLSPALLSRCTRFRFSPLKEQDIRSLVDLVIEKEEVKIQPEAVDSLVKLSKG 246
Query: 231 DMRRAITCLQSC 242
DMRRA+ LQ+C
Sbjct: 247 DMRRALNVLQAC 258
>gi|296817467|ref|XP_002849070.1| replication factor C subunit 3 [Arthroderma otae CBS 113480]
gi|238839523|gb|EEQ29185.1| replication factor C subunit 3 [Arthroderma otae CBS 113480]
Length = 397
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 104/213 (48%), Positives = 144/213 (67%), Gaps = 3/213 (1%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV Q++++ + + + LPH L YGPPGTGKTST++A +++G
Sbjct: 45 LPWVEKYRPDTLDDVSGHQDIIATINRFVESNRLPHLLLYGPPGTGKTSTILALARRIYG 104
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA--QQTASGFNQDGKPCPPFKIVILDEADSM 149
R+ +LELNASDDRGI V+R+++KTFA +Q S G FK++ILDEAD+M
Sbjct: 105 SKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADAM 164
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AAQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + + +
Sbjct: 165 TSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRKLVDTVI 224
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
++E V A+++LV+ S GDMRRA+ LQ+C
Sbjct: 225 DKEQVQIQPDAIDSLVKLSKGDMRRALNVLQAC 257
>gi|195051153|ref|XP_001993043.1| GH13305 [Drosophila grimshawi]
gi|193900102|gb|EDV98968.1| GH13305 [Drosophila grimshawi]
Length = 332
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 155/243 (63%), Gaps = 12/243 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD+I +E++S + + ++ LPH LFYGPPGTGKTST++A QL+
Sbjct: 11 LPWVEKYRPNCLDDLISHEEIISTITRFINQKQLPHLLFYGPPGTGKTSTILACARQLYS 70
Query: 93 D-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++ +LELNASDDRGI ++R ++ FA T + F C FK++ILDEAD+MT+
Sbjct: 71 SAHFKSMVLELNASDDRGIGIVRGQILNFAS-TRTIF------CGTFKLIILDEADAMTN 123
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T++ RFC+ICNY+S II L SRC++FRF PL+ ML RL I ++
Sbjct: 124 DAQNALRRIIEKYTENVRFCIICNYLSKIIPALQSRCTRFRFAPLSAEQMLPRLNQIVQE 183
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPKPWIEK 270
E V L+ S GDMR+ + LQS + IVNED V G + IE
Sbjct: 184 EHVNVTDDGKNALLTLSKGDMRKVLNVLQSTSM---AFDIVNEDNVYMCVGYPLRSEIEH 240
Query: 271 LLK 273
+L+
Sbjct: 241 MLQ 243
>gi|193676219|ref|XP_001942989.1| PREDICTED: replication factor C subunit 5-like [Acyrthosiphon
pisum]
Length = 329
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 125/274 (45%), Positives = 167/274 (60%), Gaps = 16/274 (5%)
Query: 29 RNKP-VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
+ KP +PWVEKYRP T+DD+I ++++ + K + LPH LFYGPPGTGKTST++A
Sbjct: 3 KAKPNLPWVEKYRPNTLDDLISHEDIIQTIGKFIKEDQLPHLLFYGPPGTGKTSTILACA 62
Query: 88 HQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ +R +LELNASDDRGI V+R +V FA T + F FK++ILDEA
Sbjct: 63 KQLYTPAQFRSMVLELNASDDRGINVVRGQVLNFAS-TRTIFKSG------FKLIILDEA 115
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT+ AQ ALRR +EK T + RFCLICNY+S II L SRC++FRF PL ++ RL+
Sbjct: 116 DAMTNDAQNALRRIIEKFTDNVRFCLICNYLSKIIPALQSRCTRFRFGPLDSKQIMPRLE 175
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPK 265
Y+ EQE V + L++ + GDMR+ + LQS A VNED V G K
Sbjct: 176 YVVEQEKVKVTEDGKKALIDLAQGDMRKVLNILQSAA---TAFPEVNEDSVYTCVGHPLK 232
Query: 266 PWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
I +LK D F K I++L ++ A Q
Sbjct: 233 SDIMNILKWLLNDDFSTTFKKIQELKIQKGLALQ 266
>gi|146161442|ref|XP_001007155.2| hypothetical protein TTHERM_00213600 [Tetrahymena thermophila]
gi|146146775|gb|EAR86910.2| hypothetical protein TTHERM_00213600 [Tetrahymena thermophila
SB210]
Length = 345
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 113/274 (41%), Positives = 168/274 (61%), Gaps = 17/274 (6%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLS-GADLPHFLFYGPPGTGKT 80
++ K + + +PWVEKYRP+ +D+VI + +V+ +KK + LP+ LFYGPPGTGKT
Sbjct: 7 ITVETKQKQQNIPWVEKYRPENLDNVISHEYIVATIKKFIEEDKKLPNLLFYGPPGTGKT 66
Query: 81 STMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
S ++A QL+G Y++ +LELNASDDRGI V+R+++KTFA + + F GK K+
Sbjct: 67 SLIVALAKQLYGKNYKQLVLELNASDDRGIDVVREQIKTFA--STANFGMVGKGT---KL 121
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
+ILDEADSMT+ AQ ALRR +EK + + RFC+ICNYVS II L SRC++F+FK +
Sbjct: 122 IILDEADSMTNQAQFALRRIIEKYSSNARFCMICNYVSKIIPALQSRCTRFKFKHIPYQD 181
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDV 256
R+ IC E++ +E + + GDMRR + LQS + G I +E V
Sbjct: 182 AKLRIAQICNAENLKYKNSGIEAVFKLCDGDMRRVVNMLQSLSLQGYGSDEQVEITDELV 241
Query: 257 LEVTGVIPKPWIEKLLKV-------DSFQVLEKY 283
+ TG IE ++ +S+++++ Y
Sbjct: 242 YKFTGNATPKDIENIINTMNNKSISESYEIIQSY 275
>gi|168037225|ref|XP_001771105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677638|gb|EDQ64106.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 365
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 143/229 (62%), Gaps = 4/229 (1%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
A K V + + K PWVEKYRP ++ DV ++++ + + LPH L YG
Sbjct: 12 ASQKGKGKVDLNNGRQVKGGPWVEKYRPTSLADVAAHKDIIDTIDRLTGENRLPHLLLYG 71
Query: 74 PPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133
PPGTGKTST++A +L+G Y+ ILELNASDDRGI+V+R +++ FA + F
Sbjct: 72 PPGTGKTSTILAVARKLYGAQYQNMILELNASDDRGIEVVRQQIQDFASTKSISFG---- 127
Query: 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
P K+VILDEAD+MT AQ ALRR +EK TKSTRFCLICNY S II L SRC++FRF
Sbjct: 128 PKVNVKLVILDEADAMTKDAQFALRRVIEKYTKSTRFCLICNYASKIIPALQSRCTRFRF 187
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
PL + RL+Y+ +QE + L +V + GD+R+A+ LQS
Sbjct: 188 APLDPANVTERLRYVIQQEGLDVTDGGLAAIVRLANGDLRKALNILQSA 236
>gi|225718872|gb|ACO15282.1| Replication factor C subunit 5 [Caligus clemensi]
Length = 345
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 102/211 (48%), Positives = 142/211 (67%), Gaps = 3/211 (1%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK + D++ +++V +++ + + +PH LFYGPPGTGKTS ++AA ++FG
Sbjct: 15 LPWVEKYRPKDLSDLVSHEDIVGTIRRFVKESRMPHMLFYGPPGTGKTSAILAASREVFG 74
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ +LELNASDDRGI V R ++ FA Q G FK++ILDEAD+MT+
Sbjct: 75 ETSNSSVLELNASDDRGIDVARGRILNFASTKRIAI-QAGTAS--FKLIILDEADAMTND 131
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK T + RFCLICNY+S II L SRC++FRF PLA +L RLQ + ++E
Sbjct: 132 AQNALRRIIEKFTDNVRFCLICNYLSKIIPALQSRCTRFRFAPLASEQILPRLQAVVKEE 191
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCA 243
S+ + L+ + GDMRR + LQSC+
Sbjct: 192 SLEMSPDGAKALLTLAKGDMRRILNILQSCS 222
Score = 41.2 bits (95), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 20/137 (14%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE-DVLEVTGVIPNPWI----EKLLK 374
KAL TL + GDMRR + LQSC+ ++NE ++ TG P I E LL
Sbjct: 201 KALLTLAK---GDMRRILNILQSCSM---AFPVINESNIYACTGHPPPSDISLALESLLN 254
Query: 375 VD---SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 431
D ++Q + +++ + S + + H +++ +S++ K +L KLA+ RL
Sbjct: 255 DDLQKAYQTI--HVQLQTTKGLSLIDILTELH-LLVHRLEISNRVKVKLLIKLADAEHRL 311
Query: 432 QDGASEYIQILDLGSIV 448
G SE IQ LG++V
Sbjct: 312 LSGTSEKIQ---LGAVV 325
>gi|308487512|ref|XP_003105951.1| CRE-RFC-4 protein [Caenorhabditis remanei]
gi|308254525|gb|EFO98477.1| CRE-RFC-4 protein [Caenorhabditis remanei]
Length = 362
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 115/237 (48%), Positives = 156/237 (65%), Gaps = 18/237 (7%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
++K + W EKYRPKT+DD+ Q EVV++LK L G DLPH LFYGPPGTGKTST +A C
Sbjct: 11 KSKVLTWTEKYRPKTLDDIAHQDEVVTMLKGALQGKDLPHLLFYGPPGTGKTSTALAFCR 70
Query: 89 QLFG-DMYRERILELNASDDRGIQVIRDKV--------------KTFAQQTASGFNQDGK 133
QLF +++++R+L+LNASD+RGI V+R KV ++F++ T S ++
Sbjct: 71 QLFPRNIFQDRVLDLNASDERGISVVRQKVSRFIVLLSNHSLQIQSFSKTTLSTNCKED- 129
Query: 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
KI+ILDE D+MT AQAA+RR +E +K+TRF LICNYVS +I P+ SRC+KFRF
Sbjct: 130 -VLKLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRF 188
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR-LKGGE 249
K L + RL+ IC+ E L ++E S GD+RRA+ LQS A L+ G+
Sbjct: 189 KSLPSEVQVQRLRTICDAEETPMSNDELMQVMEYSEGDLRRAVCTLQSLAPILRSGD 245
>gi|330507468|ref|YP_004383896.1| replication factor C small subunit [Methanosaeta concilii GP6]
gi|328928276|gb|AEB68078.1| replication factor C small subunit [Methanosaeta concilii GP6]
Length = 323
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 110/286 (38%), Positives = 170/286 (59%), Gaps = 13/286 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+ +DD++ Q E+V LK + +LPH LF GPPG GKT+ I+ ++FG+
Sbjct: 8 WIEKYRPERLDDIVGQDEIVRRLKSYVKTRNLPHLLFSGPPGVGKTAASISIVKEIFGET 67
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R +ELNASD+RGI +IR KVK FA+ G FK++ LDEAD++T+ AQ
Sbjct: 68 WRNNFIELNASDERGIDIIRHKVKDFARMAPLG-------EADFKVIFLDEADALTNDAQ 120
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II+P+ SRC+ +RFKPL+ + R+++I +E +
Sbjct: 121 SALRRTMERYSATTRFILSCNYSSKIIEPIQSRCAVYRFKPLSPEAVTKRIKFIASEEGL 180
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
L + +GGDMR+AI LQ+ A L G+ + E + ++T I+ +K
Sbjct: 181 RVSDGGLSAIEYVAGGDMRKAINALQAAALL--GDEVDEETIYQITSTAKPEEIKSFIKT 238
Query: 275 ---DSFQVLEKYIEDLIL-EAYSATQLFDQFHDIVMLASSLSDKQK 316
F ++DL+L + S + Q H ++ ++D+ +
Sbjct: 239 AISGDFVGARAILDDLLLSKGLSGQDVVIQIHRAMLDLDDIADRDR 284
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
L + +GGDMR+AI LQ+ A L G+ + E + ++T I+ +K
Sbjct: 186 GLSAIEYVAGGDMRKAINALQAAALL--GDEVDEETIYQITSTAKPEEIKSFIKTAISGD 243
Query: 378 FQVLEKYIEDLIL-EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F ++DL+L + S + Q H ++ ++D+ + +++++ E + R+ +GA+
Sbjct: 244 FVGARAILDDLLLSKGLSGQDVVIQIHRAMLDLDDIADRDRVKLIDRIGEIDFRMTEGAN 303
Query: 437 EYIQI 441
E IQ+
Sbjct: 304 ERIQL 308
>gi|432872493|ref|XP_004072116.1| PREDICTED: replication factor C subunit 5-like [Oryzias latipes]
Length = 340
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 165/247 (66%), Gaps = 16/247 (6%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
S+S+T + ++RN +PWVEKYRP+ +DD+I ++++S +++ + LPH L YGPP
Sbjct: 3 STSRTPL----QSRN--LPWVEKYRPQKLDDLISHRDILSTIQRFVREDRLPHLLLYGPP 56
Query: 76 GTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134
GTGKTST++A QL+ D + +LELNASDDRGI V+R + +FA T + F +
Sbjct: 57 GTGKTSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFAS-TRTIFKKG--- 112
Query: 135 CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
FK+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF
Sbjct: 113 ---FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFG 169
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 254
PL+ + M+ RL+++ ++ES+ ++ +V S GDMRR++ LQS + G + +
Sbjct: 170 PLSADQMIPRLRHVIQEESIDITEDGMKAIVTLSSGDMRRSLNVLQSTSMAYG--KVTED 227
Query: 255 DVLEVTG 261
V TG
Sbjct: 228 SVYTCTG 234
>gi|356509405|ref|XP_003523440.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
Length = 363
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 118/276 (42%), Positives = 163/276 (59%), Gaps = 14/276 (5%)
Query: 15 PSSSKTSVSTSG-KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
P +K+ V S K +PWVEKYRP ++DDV +++V + + + LPH L YG
Sbjct: 21 PDKAKSVVVASNPAAAGKAIPWVEKYRPLSLDDVAAHRDIVDTIDRLTTENRLPHLLLYG 80
Query: 74 PPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133
PPGTGKTST++A +L+G Y+ ILELNASDDRGI V+R +++ FA + F
Sbjct: 81 PPGTGKTSTILAVARKLYGSQYQNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKSS 140
Query: 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
K+V+LDEAD+MT AQ ALRR +EK TKSTRF LICN+V+ II L SRC++FRF
Sbjct: 141 ----VKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRF 196
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253
PL + RL+++ + E + + L LV S GDMR+A+ LQS + I
Sbjct: 197 APLDAVHVTERLKHVIKAEGLDVEDSGLAALVRLSNGDMRKALNILQSTH--MASQQITE 254
Query: 254 EDVLEVTG-VIPKP------WIEKLLKVDSFQVLEK 282
E V TG +PK W+ DSF+ +++
Sbjct: 255 ETVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIDE 290
>gi|302665246|ref|XP_003024235.1| replication factor C subunit [Trichophyton verrucosum HKI 0517]
gi|291188282|gb|EFE43624.1| replication factor C subunit [Trichophyton verrucosum HKI 0517]
Length = 336
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 120/291 (41%), Positives = 175/291 (60%), Gaps = 34/291 (11%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFA-----Q 122
LFYG PGTGKTST++A LFG + R R+LELNASD+RGI ++R+K+K FA Q
Sbjct: 1 MLFYGSPGTGKTSTILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQ 60
Query: 123 QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQ 182
A + PCPPFKI+ILDEADSMTH AQ+ALRRTMEK ++ TRFCL+CNYV+ II
Sbjct: 61 PPADPAYRSQYPCPPFKIIILDEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIID 120
Query: 183 PLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
P+ SRCSKFRFK L + +RL I E + + +ETL+ S GD+R+AIT +QS
Sbjct: 121 PVASRCSKFRFKVLDGSAAQSRLVEIARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSS 180
Query: 243 ARL-KGGEG------------------IVNEDVLEVTGVIPKPWIEKLL-------KVDS 276
ARL + G G I + EV+G++P+ +++++ +
Sbjct: 181 ARLARYGSGKKKDSSDKEMELDDVKPRITVRSIEEVSGLVPETVMQRVVAALRPSKRASK 240
Query: 277 FQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVE 327
++ + + DL+ + +SA+Q+ Q + ++L L + FK + +++
Sbjct: 241 YEEISSLVADLVADGWSASQVLSQVY--LLLPQPLRNVLLTSFKTYQAVLQ 289
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 44/167 (26%)
Query: 322 LETLVETSGGDMRRAITCLQSCARL-KGGEG------------------IVNEDVLEVTG 362
+ETL+ S GD+R+AIT +QS ARL + G G I + EV+G
Sbjct: 159 VETLLRCSDGDLRKAITFMQSSARLARYGSGKKKDSSDKEMELDDVKPRITVRSIEEVSG 218
Query: 363 VIPNPWIEKLL-------KVDSFQVLEKYIEDLILEAYSATQLFDQFH------------ 403
++P +++++ + ++ + + DL+ + +SA+Q+ Q +
Sbjct: 219 LVPETVMQRVVAALRPSKRASKYEEISSLVADLVADGWSASQVLSQVYLLLPQPLRNVLL 278
Query: 404 ------DIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 444
V+ S+SD QK IL+ +E + RL DGA E++ LD
Sbjct: 279 TSFKTYQAVLQDESISDVQKNQILKVCSEFDKRLVDGADEHLSTLDF 325
>gi|429329431|gb|AFZ81190.1| replication factor C subunit 3, putative [Babesia equi]
Length = 345
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 106/244 (43%), Positives = 157/244 (64%), Gaps = 4/244 (1%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T +D+I ++++S L LPH LF+GPPGTGKTST++A L+G+
Sbjct: 8 PWVEKYRPETFEDIISHEDIMSTLMIFAEKGQLPHLLFHGPPGTGKTSTIMAISRYLYGN 67
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN---QDGKPCPPFKIVILDEADSMT 150
+LELNASD+RGI +R+++K F++ T + N QD K++ILDEAD MT
Sbjct: 68 QKNGFVLELNASDERGIDTVREQIKAFSETTNTFSNTSAQDSNIKTTLKLIILDEADQMT 127
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
+AAQ ALRR ME + + RFCLICN+++ II P+ SRC+ FRF+PL + + R++ I E
Sbjct: 128 NAAQNALRRIMEIYSSNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKPDFVRKRIRDIAE 187
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPK-PWIE 269
E++ L+TL++ GDMRR + CLQ A +++ +++ T +P+ IE
Sbjct: 188 MENLKLSDCGLDTLIQIGQGDMRRVLNCLQVTAMSYSKGNVIDANLILTTSGMPQNSEIE 247
Query: 270 KLLK 273
LL+
Sbjct: 248 HLLQ 251
Score = 42.7 bits (99), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 6/131 (4%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP-NPWIEKLLKVDSFQ 379
L+TL++ GDMRR + CLQ A +++ +++ T +P N IE LL+
Sbjct: 197 GLDTLIQIGQGDMRRVLNCLQVTAMSYSKGNVIDANLILTTSGMPQNSEIEHLLQTLMQC 256
Query: 380 VLEKYIEDL----ILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
++ +++L L+ YS + + ++ + LI+ +LA+ RL GA
Sbjct: 257 SFKESVDELNELHHLKGYSVEDIVKGLYKAILKIDWPNVPIIQLIM-RLADIEERLSAGA 315
Query: 436 SEYIQILDLGS 446
+ IQI + S
Sbjct: 316 TASIQIASIVS 326
>gi|121719320|ref|XP_001276359.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
clavatus NRRL 1]
gi|119404557|gb|EAW14933.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
clavatus NRRL 1]
Length = 395
Score = 218 bits (555), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 102/215 (47%), Positives = 144/215 (66%), Gaps = 5/215 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV Q++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 45 LPWVEKYRPNTLDDVSGHQDILTTINKFVEANRLPHLLLYGPPGTGKTSTILALARRIYG 104
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQ----TASGFNQDGKPCPPFKIVILDEAD 147
R+ +LELNASDDRGI V+R+++KTFA + + G +K++ILDEAD
Sbjct: 105 TSNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSASTGSSLASYKLIILDEAD 164
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + + + +
Sbjct: 165 AMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRSLVDH 224
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E V +A+ +LV+ S GDMRRA+ LQ+C
Sbjct: 225 VIEKEQVQIQPEAVSSLVKLSKGDMRRALNVLQAC 259
>gi|341892966|gb|EGT48901.1| hypothetical protein CAEBREN_08790 [Caenorhabditis brenneri]
Length = 349
Score = 218 bits (555), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 118/285 (41%), Positives = 164/285 (57%), Gaps = 4/285 (1%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
S +T +PWVEKYRP D+++ ++VV L + + LPH LFYGPPGTGKT+T++
Sbjct: 3 STRTVASNLPWVEKYRPSKFDELVAHEQVVKTLTRFIENRTLPHLLFYGPPGTGKTTTVL 62
Query: 85 AACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTA-SGFNQDGKPCPPFKIVI 142
AA +++ +LELNASD+RGI V+R+ + TFAQ F PFK+VI
Sbjct: 63 AAARKMYSPAKMASMVLELNASDERGIDVVRNTIVTFAQTKGLQSFASASSEQLPFKLVI 122
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT AQ ALRR +EK T + RFC+ICNY++ II + SRC++FRF PL + ++
Sbjct: 123 LDEADAMTRDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPLDQQLIV 182
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL--KGGEGIVNEDVLEVT 260
RLQ+I + ESV + L+ S GDMR I LQS A E V + + + T
Sbjct: 183 PRLQHIVDSESVKMTPDGQKALLTVSKGDMRTVINTLQSTAMSFDTVSESTVYQCIGQPT 242
Query: 261 GVIPKPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305
K + LL S + +E L + Y+ + HDIV
Sbjct: 243 PNEMKEVVTCLLNKPSKECMETIKSRLFMNGYALQDVITHLHDIV 287
>gi|302502708|ref|XP_003013315.1| replication factor C subunit [Arthroderma benhamiae CBS 112371]
gi|291176878|gb|EFE32675.1| replication factor C subunit [Arthroderma benhamiae CBS 112371]
Length = 326
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 122/288 (42%), Positives = 172/288 (59%), Gaps = 40/288 (13%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFA-----Q 122
LFYG PGTGKTST++A LFG + R R+LELNASD+RGI ++R+K+K FA Q
Sbjct: 1 MLFYGSPGTGKTSTILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLFQ 60
Query: 123 QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQ 182
A + PCPPFKI+ILDEADSMTH AQ+ALRRTMEK ++ TRFCL+CNYV+ II
Sbjct: 61 PPADPAYRSQYPCPPFKIIILDEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIID 120
Query: 183 PLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
P+ SRCSKFRFK L + +RL I E + + +ETL+ S GD+R+AIT +QS
Sbjct: 121 PVASRCSKFRFKVLDGSAAQSRLVEIARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSS 180
Query: 243 ARL-KGGEG------------------IVNEDVLEVTGVIPKPWIEKLL-------KVDS 276
ARL + G G I + EV+G++P+ +++++ +
Sbjct: 181 ARLARYGSGKKKDSSDKDMELDDVKPRITVRSIEEVSGLVPETVMQRVVAALRPSKRASK 240
Query: 277 FQVLEKYIEDLILEAYSATQLFDQ--------FHDIVMLASSLSDKQK 316
++ + + DL+ + +SA+Q+ Q + V+ S+SD QK
Sbjct: 241 YEEISSLVADLVADGWSASQVLSQNVLLTSFKTYQAVLQDESISDVQK 288
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 34/157 (21%)
Query: 322 LETLVETSGGDMRRAITCLQSCARL-KGGEG------------------IVNEDVLEVTG 362
+ETL+ S GD+R+AIT +QS ARL + G G I + EV+G
Sbjct: 159 VETLLRCSDGDLRKAITFMQSSARLARYGSGKKKDSSDKDMELDDVKPRITVRSIEEVSG 218
Query: 363 VIPNPWIEKLL-------KVDSFQVLEKYIEDLILEAYSATQLFDQ--------FHDIVM 407
++P +++++ + ++ + + DL+ + +SA+Q+ Q + V+
Sbjct: 219 LVPETVMQRVVAALRPSKRASKYEEISSLVADLVADGWSASQVLSQNVLLTSFKTYQAVL 278
Query: 408 SASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 444
S+SD QK IL+ +E + RL DGA E++ LD
Sbjct: 279 QDESISDVQKNQILKVCSEFDKRLVDGADEHLSTLDF 315
>gi|367055770|ref|XP_003658263.1| hypothetical protein THITE_2124823 [Thielavia terrestris NRRL 8126]
gi|347005529|gb|AEO71927.1| hypothetical protein THITE_2124823 [Thielavia terrestris NRRL 8126]
Length = 389
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 139/385 (36%), Positives = 202/385 (52%), Gaps = 59/385 (15%)
Query: 12 KDAPSSSKTSVSTSGKTRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGAD 65
KD SS T+ N PV PWVEKYRP ++ DV Q++++ + K +
Sbjct: 16 KDITFSSDTAAKGKRSAANLPVEAEDSLPWVEKYRPVSLSDVSGHQDILATINKFVDSNR 75
Query: 66 LPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFA--- 121
LPH LFYGPPGTGKTST++A +++G R+ +LELNASDDRGI+V+R+ +KTFA
Sbjct: 76 LPHLLFYGPPGTGKTSTILALARRIYGHQNMRQMVLELNASDDRGIEVVREHIKTFASTK 135
Query: 122 QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCII 181
Q +G + FK++ILDEAD+MT+ AQ ALRR MEK T +TRFC+I NY +
Sbjct: 136 QIFTAGSSASRAGIAGFKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLS 195
Query: 182 QPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
L SRC++FRF PL E + + + E+E V A+++LV S GDMRRA+ LQ+
Sbjct: 196 PALLSRCTRFRFSPLHEQDIRVLVDKVIEEEGVKIMPDAVDSLVRLSKGDMRRALNVLQA 255
Query: 242 CARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQF 301
C T + P+ D ++ E +D++ E + +++
Sbjct: 256 CH-------------ASSTPLQPR---------DGPKIPE---QDIVRETITTETIYN-- 288
Query: 302 HDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDV---- 357
+A+ D A+ K L TL+ TS +CL + LK +G+ D+
Sbjct: 289 ----CVAAPPPD---AIKKILSTLLSTSD-----VTSCLSTINTLKAAQGLALADIITAL 336
Query: 358 ------LEVTGVIPNPWIEKLLKVD 376
LEV + W+E L V+
Sbjct: 337 SEELVKLEVKPQVMITWLETLADVE 361
Score = 38.1 bits (87), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 28/169 (16%)
Query: 298 FDQFH--DIVMLASSLSDKQ--KALFKALETLVETSGGDMRRAITCLQSCA------RLK 347
F H DI +L + +++ K + A+++LV S GDMRRA+ LQ+C + +
Sbjct: 207 FSPLHEQDIRVLVDKVIEEEGVKIMPDAVDSLVRLSKGDMRRALNVLQACHASSTPLQPR 266
Query: 348 GGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLI--------------LEAY 393
G I +D++ T I I + ++K + L+ L+A
Sbjct: 267 DGPKIPEQDIVRET--ITTETIYNCVAAPPPDAIKKILSTLLSTSDVTSCLSTINTLKAA 324
Query: 394 SATQLFDQFHDIVMSASSLSDKQKALI--LEKLAECNARLQDGASEYIQ 440
L D + L K + +I LE LA+ R+ GASE IQ
Sbjct: 325 QGLALADIITALSEELVKLEVKPQVMITWLETLADVEHRVSSGASEAIQ 373
>gi|224009073|ref|XP_002293495.1| replication factor C 36 kDa subunit [Thalassiosira pseudonana
CCMP1335]
gi|220970895|gb|EED89231.1| replication factor C 36 kDa subunit [Thalassiosira pseudonana
CCMP1335]
Length = 321
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 118/287 (41%), Positives = 171/287 (59%), Gaps = 23/287 (8%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++D++ +++V++L + + +LPH L YGPPGTGKTST++AA +++G
Sbjct: 1 MPWVEKYRPAKLEDLVAHEDIVAILTRLIDSDNLPHLLLYGPPGTGKTSTIVAAAKRMYG 60
Query: 93 DM--YRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPCPPFKIVILDEAD 147
Y LELNASD RGI V+R+++K FA Q SG K++ILDEAD
Sbjct: 61 STAAYSSMALELNASDSRGIDVVRNEIKEFAGTRQLFHSGI----------KLIILDEAD 110
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR +EK TK+ RFCLICNYVS II L SRC++FRF PL + + +RL
Sbjct: 111 AMTSDAQFALRRVIEKHTKNARFCLICNYVSKIIPALQSRCTRFRFAPLKQEQIRSRLVE 170
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP- 266
+ + E ++ +++ SGGDMRR + LQS A G IV+E + +T P P
Sbjct: 171 VADAEKCNYTEDGIQAILDLSGGDMRRVLNLLQSTAM---GSEIVDEKNVYMTSGAPLPR 227
Query: 267 ----WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLAS 309
+E L+ ++ V EK + Y+ T + + + V A+
Sbjct: 228 DVHVAMEWLMNLEFKDVYEKLTNMCSTKGYALTDILTELANKVTEAN 274
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 9/136 (6%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----WIEKLLKV 375
++ +++ SGGDMRR + LQS A G IV+E + +T P P +E L+ +
Sbjct: 183 GIQAILDLSGGDMRRVLNLLQSTAM---GSEIVDEKNVYMTSGAPLPRDVHVAMEWLMNL 239
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
+ V EK + Y+ T + + + V A + A++L+ +++ RL G
Sbjct: 240 EFKDVYEKLTNMCSTKGYALTDILTELANKVTEA-NFPPGVLAVLLDGMSDVEHRLAFGT 298
Query: 436 SEYIQILDLGSIVIKA 451
E +Q L + +K
Sbjct: 299 DEKLQAASLVGVFVKG 314
>gi|156062848|ref|XP_001597346.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980]
gi|154696876|gb|EDN96614.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 390
Score = 218 bits (554), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 103/213 (48%), Positives = 146/213 (68%), Gaps = 4/213 (1%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T++DV Q++++ + K + LPH LFYGPPGTGKTST++A +++G
Sbjct: 45 LPWVEKYRPDTLEDVSGHQDILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARRIYG 104
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSM 149
R+ +LELNASDDRGI+V+R+++KTFA T F+ + P +K++ILDEAD+M
Sbjct: 105 PKNMRQMVLELNASDDRGIEVVREQIKTFAS-TKQIFSMNSATVSPGAYKLIILDEADAM 163
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E+ + + +
Sbjct: 164 TSTAQMALRRVMEKYTANTRFCVIANYTHKLSPALLSRCTRFRFSPLKESDIRVLVDKVI 223
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+E+V + +A + LV S GDMRRA+ LQ+C
Sbjct: 224 MEENVQINAEATDALVRLSKGDMRRALNVLQAC 256
>gi|379005452|ref|YP_005261124.1| DNA polymerase III subunit gamma and tau [Pyrobaculum oguniense
TE7]
gi|375160905|gb|AFA40517.1| DNA polymerase III, gamma/tau subunits [Pyrobaculum oguniense TE7]
Length = 329
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 101/209 (48%), Positives = 138/209 (66%), Gaps = 7/209 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP+ D+V++ +EV + L++ + ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRVFDEVVDLEEVKARLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NYVS II P+ SRC+ FRF P+ M RL++I + E +
Sbjct: 119 QALRRIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRGLMAERLRHIAKSEGI 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCA 243
A++ + E S GDMR+AI LQ A
Sbjct: 179 ELRDDAIDLIYEVSEGDMRKAINLLQVAA 207
>gi|392590080|gb|EIW79410.1| DNA replication factor [Coniophora puteana RWD-64-598 SS2]
Length = 345
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 145/210 (69%), Gaps = 7/210 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV +++ + +++ + LPH LFYGPPGTGKTST++A +++G
Sbjct: 29 LPWVEKYRPVTLDDVKSHKDITTTIERFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYG 88
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR++ILELNASDDRGI V+R+++K FA +T + F + +K++ILDEAD MT
Sbjct: 89 SEYRKQILELNASDDRGIDVVREQIKQFA-ETRTLFAKS------YKLIILDEADMMTQQ 141
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQAALRR +E+ TK+ RFC+ICNYV+ I + SRC++FRF PL + ++ ++ E E
Sbjct: 142 AQAALRRVIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPMAEVEKQIDHVVEAE 201
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSC 242
E L++ S GDMRRA+ LQ+C
Sbjct: 202 DCKVTKDGKEALLKLSKGDMRRALNVLQAC 231
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 64/140 (45%), Gaps = 15/140 (10%)
Query: 323 ETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IEKLLK---VDSF 378
E L++ S GDMRRA+ LQ+C + I +V TG P+P IE ++ D F
Sbjct: 211 EALLKLSKGDMRRALNVLQACH--AAYDSIGETEVYNCTGN-PHPRDIESIVNSMLSDEF 267
Query: 379 QVLEKYIEDLILEAYSATQ--LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+ I + E A Q L F + L + + +L+ LA RL GAS
Sbjct: 268 TTSYQMINQMKTERGLALQDLLSGAFE--YVDTLELKPQARVYLLDYLATIEYRLSTGAS 325
Query: 437 EYIQILDLGSIVIKANKTAV 456
E IQ+ S ++ A K AV
Sbjct: 326 EKIQL----SALLGAFKNAV 341
>gi|336476385|ref|YP_004615526.1| replication factor C [Methanosalsum zhilinae DSM 4017]
gi|335929766|gb|AEH60307.1| Replication factor C [Methanosalsum zhilinae DSM 4017]
Length = 317
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 108/259 (41%), Positives = 160/259 (61%), Gaps = 12/259 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP +DDV+ Q+E + LK + +LPH LF GPPG GKT+T +A H+LFGD
Sbjct: 6 WIEKYRPMKLDDVVGQKEAIERLKSYVKTRNLPHLLFSGPPGVGKTATAVAIAHELFGDS 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+ E ELNASD+RGI V+R K+K FA+ + G FKI+ LDEAD++T AQ
Sbjct: 66 WNENFTELNASDERGIDVVRTKIKNFAKTSPIG-------GADFKIIFLDEADALTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ T + RF L CNY S II+P+ SRC+ +RF+PLA+ + R++Y+ + E +
Sbjct: 119 SALRRTMERYTGNCRFILSCNYSSKIIEPIQSRCAVYRFRPLADEPVKERIRYVADAEGI 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
A++ + + GDMR+A+ LQ+ A E I E + ++T I+ L+ +
Sbjct: 179 KLADDAIDAIGYVAQGDMRKALNALQAAAMFD--ETIQKEMIYKITATAHPDEIKTLINI 236
Query: 275 ---DSFQVLEKYIEDLILE 290
+F + ++ L+LE
Sbjct: 237 ALDGNFSAAREKLDTLMLE 255
Score = 40.0 bits (92), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 7/136 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
A++ + + GDMR+A+ LQ+ A E I E + ++T I+ L+ + +
Sbjct: 184 AIDAIGYVAQGDMRKALNALQAAAMFD--ETIQKEMIYKITATAHPDEIKTLINIALDGN 241
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F + ++ L+LE S + Q + M + DK+ +++ + E + R+ +GA+
Sbjct: 242 FSAAREKLDTLMLEQGLSGEDVVGQIYR-AMFGLDIPDKKLVELIDVIGEIDFRITEGAN 300
Query: 437 EYIQILDLGSIVIKAN 452
E IQ+ L + + AN
Sbjct: 301 EKIQLQALLAHFVIAN 316
>gi|242066704|ref|XP_002454641.1| hypothetical protein SORBIDRAFT_04g034710 [Sorghum bicolor]
gi|241934472|gb|EES07617.1| hypothetical protein SORBIDRAFT_04g034710 [Sorghum bicolor]
Length = 362
Score = 217 bits (553), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 117/261 (44%), Positives = 159/261 (60%), Gaps = 11/261 (4%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
+ PWVEKYRP+++ DV +++V + + + LPH L YGPPGTGKTST++A +L
Sbjct: 37 RAAPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKL 96
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+G Y ILELNASD+RGI V+R +++ FA + F P K+V+LDEAD+MT
Sbjct: 97 YGSQYSNMILELNASDERGIDVVRQQIQDFAGARSLSFGAR----PSVKLVLLDEADAMT 152
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRR +EK T+STRF LICN+V+ II L SRC++FRF PL + + RLQ+I +
Sbjct: 153 KDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHIIK 212
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW-IE 269
E + D L LV S GDMR+A+ LQS + I E V TG P P IE
Sbjct: 213 SEGLSVDEGGLTALVRLSNGDMRKALNILQSTH--MASQQITEEAVYLCTGN-PMPNDIE 269
Query: 270 KL---LKVDSFQVLEKYIEDL 287
++ L + F K+I D+
Sbjct: 270 RIAFWLLNEPFSTSFKHISDM 290
>gi|448730730|ref|ZP_21713035.1| replication factor C small subunit [Halococcus saccharolyticus DSM
5350]
gi|445793171|gb|EMA43761.1| replication factor C small subunit [Halococcus saccharolyticus DSM
5350]
Length = 325
Score = 217 bits (553), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 108/274 (39%), Positives = 166/274 (60%), Gaps = 18/274 (6%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+ DV+ + +V L+ ++ DLPH LF GP G GKT++ +A +++GD
Sbjct: 15 WIEKYRPETLADVVGHENIVGRLESYVAQNDLPHLLFSGPAGVGKTTSSMAIAREVYGDD 74
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI V+RD++K FA+ + G++ ++I+ LDEAD++T AQ
Sbjct: 75 WRENFLELNASDERGIDVVRDRIKDFARTSFGGYD--------YRIIFLDEADALTSDAQ 126
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ +TRF L CNY S II P+ SRC+ FRF PLAE + ++ + E E +
Sbjct: 127 SALRRTMEQFANNTRFILSCNYSSQIIDPIQSRCAVFRFGPLAEEAVGEYIRRVAENEGI 186
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP-----WIE 269
++ LV + GDMR+A+ LQ+ A + EG V+++ + +P +E
Sbjct: 187 EVTDDGVDALVYAADGDMRKALNGLQAAATM---EGAVDDEAVYGITATARPEEIEAMVE 243
Query: 270 KLLKVDSFQVLEKYIEDLILEA-YSATQLFDQFH 302
+ L D F ++DL+ +A + DQ H
Sbjct: 244 RALDGD-FTAARAKLDDLLTDAGLGGGDVIDQLH 276
Score = 45.1 bits (105), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDS- 377
++ LV + GDMR+A+ LQ+ A ++G + +E V +T IE +++ +D
Sbjct: 192 GVDALVYAADGDMRKALNGLQAAATMEG--AVDDEAVYGITATARPEEIEAMVERALDGD 249
Query: 378 FQVLEKYIEDLILEA-YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F ++DL+ +A + DQ H L D +LE++ E + R+ GA+
Sbjct: 250 FTAARAKLDDLLTDAGLGGGDVIDQLHRSAWD-FDLDDAATVRLLERVGETDYRITQGAN 308
Query: 437 EYIQ 440
E +Q
Sbjct: 309 ERLQ 312
>gi|116205575|ref|XP_001228598.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88176799|gb|EAQ84267.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 389
Score = 217 bits (553), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 141/390 (36%), Positives = 207/390 (53%), Gaps = 65/390 (16%)
Query: 13 DAPSSSKTSVSTSGKTRNK------PV------PWVEKYRPKTIDDVIEQQEVVSVLKKC 60
D P+S S+ G ++ K PV PWVEKYRP ++ DV Q++++ + K
Sbjct: 11 DVPASKDIKFSSDGASKGKRSAANLPVEAEDSLPWVEKYRPVSLADVSGHQDILATINKF 70
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
+ LPH L YGPPGTGKTST++A +++G + R+ +LELNASDDRGI V+R+++KT
Sbjct: 71 VDSNRLPHLLLYGPPGTGKTSTILALARRIYGSENMRQMVLELNASDDRGIDVVREQIKT 130
Query: 120 FA---QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
FA Q G + FK++ILDEAD+MT+ AQ ALRR MEK T +TRFC+I NY
Sbjct: 131 FASTKQIFTMGASASRTGIAGFKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANY 190
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
+ L SRC++FRF PL E + + + E+E+V +A E LV S GDMRRA+
Sbjct: 191 SHKLSPALLSRCTRFRFSPLKEQDIRVLVDKVIEEETVKIIPEATEALVRLSKGDMRRAL 250
Query: 237 TCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKVDSFQVLEKYIEDLILEAYSATQ 296
LQ+C T + P+ D+ ++ EK D++ E +
Sbjct: 251 NVLQACH-------------ASSTPLQPR---------DAPKIPEK---DIVRETITTQT 285
Query: 297 LFDQFHDIVMLASSLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 356
+++ +A+ D A+ K L TL+ TS +CL + LK +G+ D
Sbjct: 286 IYN------CVAAPPPD---AIKKILGTLLSTSD-----VTSCLSTINTLKVAQGLALAD 331
Query: 357 V----------LEVTGVIPNPWIEKLLKVD 376
+ LEV + W+EKL +V+
Sbjct: 332 IITALSDELTKLEVKPQVMITWLEKLAEVE 361
>gi|68067050|ref|XP_675496.1| replication factor C3 [Plasmodium berghei strain ANKA]
gi|56494714|emb|CAH95400.1| replication factor C3, putative [Plasmodium berghei]
Length = 329
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 112/259 (43%), Positives = 164/259 (63%), Gaps = 12/259 (4%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY 95
VEKYRP ++D+I ++V+S ++K + +LPH L +GPPGTGKTST++A C +L+G+
Sbjct: 1 VEKYRPSVLNDIISHEQVISTIRKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGESR 60
Query: 96 RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
+LELNASDDRGI V+R+++KTFA ++ + +N + K++ILDEAD MT AQ
Sbjct: 61 SSFVLELNASDDRGITVVREQIKTFA-ESKNHYNICER--TSLKLIILDEADHMTFPAQN 117
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
A+RR ME K+ RFCLICNYV+ I + SRC+ FRF PL E ML + I + E+V
Sbjct: 118 AMRRIMENYAKNVRFCLICNYVNKITPAIQSRCTSFRFSPLKEEYMLNKALDIAKSENVN 177
Query: 216 CDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP-----WIEK 270
+E+L+ GDMRR + CLQ + L +++E+V+ T IP P +E
Sbjct: 178 LTKNGVESLIRVGRGDMRRILNCLQVVS-LSHKNMVIDENVILSTLDIPLPTEIKFILEH 236
Query: 271 LLKV---DSFQVLEKYIED 286
L K +S++++ K ED
Sbjct: 237 LTKSTIKESYEIITKLQED 255
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 13/139 (9%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----WIEKLLK 374
+E+L+ GDMRR + CLQ + L +++E+V+ T IP P +E L K
Sbjct: 181 NGVESLIRVGRGDMRRILNCLQVVS-LSHKNMVIDENVILSTLDIPLPTEIKFILEHLTK 239
Query: 375 V---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 431
+S++++ K ED + YS + ++ V++ D L+L+ E R
Sbjct: 240 STIKESYEIITKLQED---KGYSIKDIMICLYETVLTY-DYPDSAICLLLKNFGEIEERC 295
Query: 432 QDGASEYIQILDLGSIVIK 450
G +E I + L S I+
Sbjct: 296 ASGTTEQITLSSLISAFIE 314
>gi|198413770|ref|XP_002129710.1| PREDICTED: similar to replication factor C (activator 1) 5 (36.5
kDa) [Ciona intestinalis]
Length = 327
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 112/243 (46%), Positives = 162/243 (66%), Gaps = 12/243 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+++DD+I ++++S + L+ LPH LFYGPPGTGKTST++A +L+
Sbjct: 8 LPWVEKYRPESLDDLISHEDILSTISGFLAQNRLPHLLFYGPPGTGKTSTILACARKLYS 67
Query: 93 D-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
+ +LELNASDDRGI V+R+++ +FA T + FN+ FK++ILDEAD+MT
Sbjct: 68 TTQFNSMVLELNASDDRGIGVVRNQILSFAS-TRTIFNKG------FKLIILDEADAMTK 120
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR MEK ++TRFCLICNY++ II + SRC++FRF PL + + +RL+YI +
Sbjct: 121 DAQNALRRVMEKFMENTRFCLICNYLTKIIPAIQSRCTRFRFGPLTTDKISSRLEYIIKV 180
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPKPWIEK 270
E + L LV + GDMR+A+ LQS + V+ED V + TG + I+K
Sbjct: 181 EQLNVTEDGLNALVTLANGDMRKALNILQSSSM---AYNEVDEDGVYKCTGRPRRDDIKK 237
Query: 271 LLK 273
++K
Sbjct: 238 IMK 240
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 12/133 (9%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEKLLKV---D 376
L LV + GDMR+A+ LQS + V+ED V + TG I+K++K +
Sbjct: 189 GLNALVTLANGDMRKALNILQSSSM---AYNEVDEDGVYKCTGRPRRDDIKKIMKWMLNE 245
Query: 377 SFQVLEKYIEDLILEAYSATQ-LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
+ + I +L + A Q + +Q H V + +L+KLA+ RL G
Sbjct: 246 DYTTAYRSIMELNMTTSMALQDIIEQIHLFVHEV-HFPVAVRIYLLDKLADIEHRLASGT 304
Query: 436 SEYIQILDLGSIV 448
SE +Q LGS+V
Sbjct: 305 SEKLQ---LGSLV 314
>gi|347832701|emb|CCD48398.1| similar to replication factor C subunit 3 [Botryotinia fuckeliana]
Length = 390
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 150/237 (63%), Gaps = 5/237 (2%)
Query: 10 LGKDAPSS-SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH 68
G DA +S K S + +PWVEKYRP T++DV Q++++ + K + LPH
Sbjct: 22 FGSDATTSKGKRSAANLPVEAEDSLPWVEKYRPDTLEDVSGHQDILATINKFVDTNRLPH 81
Query: 69 FLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASG 127
LFYGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++KTFA T
Sbjct: 82 LLFYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRGIDVVREQIKTFAS-TKQI 140
Query: 128 FNQDGKPCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLT 185
F P +K++ILDEAD+MT AQ ALRR MEK T +TRFC+I NY + L
Sbjct: 141 FASKSSSTSPGAYKLIILDEADAMTSTAQMALRRVMEKYTANTRFCVIANYTHKLSPALL 200
Query: 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
SRC++FRF PL E + + + +E+V + +A + LV S GDMRRA+ LQ+C
Sbjct: 201 SRCTRFRFSPLKEADIRVLVDKVIAEENVQINAEATDALVRLSKGDMRRALNVLQAC 257
>gi|134118756|ref|XP_771881.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254485|gb|EAL17234.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 327
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 120/272 (44%), Positives = 168/272 (61%), Gaps = 19/272 (6%)
Query: 33 VPW---VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
V W VEKYRP ++DDV+ +++ S ++K + LPH L YGPPGTGKTST++A +
Sbjct: 5 VGWDDRVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARR 64
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
L+G YR+ ILELNASDDRGI V+R+++K FA T F++ FK+VILDEAD M
Sbjct: 65 LYGPAYRKHILELNASDDRGIDVVREQIKNFA-MTKVLFSKG------FKLVILDEADMM 117
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AAQ+ALRR +E+ TK+ RFC++CNYV+ I + SRC++FRF PL E + ++ +
Sbjct: 118 TQAAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVV 177
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPKPW- 267
++E V + L++ S GDMRRA+ LQ+C IV+E V TG P P
Sbjct: 178 QKEGVNLTDDGRDALLKLSRGDMRRALNVLQAC---HAAYDIVDETAVYNCTGN-PHPRD 233
Query: 268 IEKLLK---VDSFQVLEKYIEDLILEAYSATQ 296
IE++++ D F I L +E A Q
Sbjct: 234 IERVVQSMMADEFGTAYSLITSLKIEKGLALQ 265
>gi|255955413|ref|XP_002568459.1| Pc21g14450 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590170|emb|CAP96342.1| Pc21g14450 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 392
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/246 (46%), Positives = 157/246 (63%), Gaps = 17/246 (6%)
Query: 13 DAPSSSK-TSVSTSGKTR---NKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCLS 62
DAP + +S + SGK R + PV PWVEKYRP ++DDV Q++++ + + +
Sbjct: 10 DAPKDLQFSSDNASGKKRTVADLPVEAQDNLPWVEKYRPSSLDDVSGHQDILATINRFVE 69
Query: 63 GADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFA 121
LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++KTFA
Sbjct: 70 TNRLPHLLLYGPPGTGKTSTILALARRIYGTKNMRQMVLELNASDDRGIDVVREQIKTFA 129
Query: 122 QQTASGFNQD-----GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
T FN G P FK++ILDEAD+MT AQ ALRR ME+ T +TRFC+I NY
Sbjct: 130 S-TKQIFNMAPQGTAGSPLAGFKLIILDEADAMTSTAQMALRRIMERYTANTRFCVIANY 188
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
+ L SRC++FRF PL E + T + + E+E V A+++LV S GDMRRA+
Sbjct: 189 THKLSPALLSRCTRFRFSPLKEVDIRTLVDQVIEKEGVKIQPDAVDSLVTLSKGDMRRAL 248
Query: 237 TCLQSC 242
LQ+C
Sbjct: 249 NVLQAC 254
>gi|402593971|gb|EJW87898.1| replication factor C 5 [Wuchereria bancrofti]
Length = 347
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/279 (41%), Positives = 171/279 (61%), Gaps = 11/279 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++ +++ QE++ L K ++ LPH LFYGPPGTGKTST++AA L+
Sbjct: 15 MPWVEKYRPASLTELVSHQEIIDTLMKLINENRLPHLLFYGPPGTGKTSTILAAARMLYT 74
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
+LELNASDDRGI ++R+++ FAQ + +++ P K+VILDEAD+MT
Sbjct: 75 PKQLSSMVLELNASDDRGIGIVREQIINFAQTSTLNVDKNQSSVP--KLVILDEADAMTK 132
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ+ALRR +EK T + RFC+ICNY+S II + SRC++ RF PL+ +L RL +I
Sbjct: 133 DAQSALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLSNEQILPRLHHIVRV 192
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW-IEK 270
ES+ + L+ + GDMRR I LQS A + + +V G P P +EK
Sbjct: 193 ESLTVTEDGQKALLNLAEGDMRRVINILQSTA--MAFKTVDERNVYRCLGY-PLPTDVEK 249
Query: 271 LLKV---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIV 305
++K+ DS + IE++ E A++ + + + HD +
Sbjct: 250 IVKILLNDSMEDAYTRIEEIRNERAFALSDILNSMHDFI 288
>gi|435850632|ref|YP_007312218.1| DNA polymerase III, gamma/tau subunit [Methanomethylovorans
hollandica DSM 15978]
gi|433661262|gb|AGB48688.1| DNA polymerase III, gamma/tau subunit [Methanomethylovorans
hollandica DSM 15978]
Length = 333
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 104/260 (40%), Positives = 163/260 (62%), Gaps = 14/260 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP +DD++ Q E ++ LK + +LPH LF GPPG GKT+T ++ +LF D
Sbjct: 21 WIEKYRPMRLDDIVGQTEAIARLKSYVKSRNLPHLLFSGPPGVGKTATAVSIAKELFADS 80
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE ELNASD+RGI V+R K+K+FA+ + G FKI+ LDEAD++T AQ
Sbjct: 81 WRENFTELNASDERGIDVVRTKIKSFAKTSPIG-------GADFKIIFLDEADALTSDAQ 133
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTME+ T + RF L CNY S II+P+ SRC+ +RF+PL+++ + R++++ E +
Sbjct: 134 AALRRTMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRPLSDDAVTERVRFVASNEGI 193
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPKPWIEKLLK 273
+E + + GDMR+AI LQ+ + + + +V++D + ++T I L+
Sbjct: 194 EVATDGMEAIKYVAQGDMRKAINALQAASLV---DNVVHKDTIYKITATARPEQITDLIN 250
Query: 274 V---DSFQVLEKYIEDLILE 290
+F KY+++L+L+
Sbjct: 251 TALSGNFMAARKYLDELLLD 270
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 65/126 (51%), Gaps = 9/126 (7%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEKLLKV---D 376
+E + + GDMR+AI LQ+ + + + +V++D + ++T I L+
Sbjct: 199 GMEAIKYVAQGDMRKAINALQAASLV---DNVVHKDTIYKITATARPEQITDLINTALSG 255
Query: 377 SFQVLEKYIEDLIL-EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
+F KY+++L+L + S + Q + + + S +K LI + + E + R+ +GA
Sbjct: 256 NFMAARKYLDELLLDQGLSGEDVVGQIYRAMFNISIPQEKMVELI-DVIGEVDFRIAEGA 314
Query: 436 SEYIQI 441
+E IQ+
Sbjct: 315 NERIQL 320
>gi|167999374|ref|XP_001752392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696292|gb|EDQ82631.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 333
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 126/324 (38%), Positives = 189/324 (58%), Gaps = 25/324 (7%)
Query: 20 TSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGK 79
T+V+ + ++ +PWVEKYRP + D++ Q+VV+ L+ G ++P+ +F GPPGTGK
Sbjct: 3 TTVAATSLAKDYDLPWVEKYRPHRVADIVGNQDVVARLQVIAQGGNMPNLIFSGPPGTGK 62
Query: 80 TSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP-- 137
T++++A H+L G ++E +LELNASDDRGI V+R+K+K FAQ+ + PP
Sbjct: 63 TTSILALAHELLGPNFKEAVLELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGR 114
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
K+V+LDEADSMT AQ ALRRTME + +TRF L CN S II+P+ SRC+ RF L+
Sbjct: 115 HKVVLLDEADSMTAGAQQALRRTMEIYSNTTRFALACNLSSKIIEPIQSRCAIVRFSRLS 174
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
++ +L RL + E E V + LE +V T+ GDMR+A+ LQ A G + + ++V
Sbjct: 175 DSEILDRLLRVVEAEKVPYVPEGLEAVVFTADGDMRQALNNLQ--ATFSGFQFVNQDNVF 232
Query: 258 EVTGVIPKPWIEKLLKVDSFQVLEKYIEDLILEAYSA-TQLFDQFHD----IVMLASSLS 312
V P P + + Q+++ I I +AY+ QL+D + I L +
Sbjct: 233 RVCDQ-PHPLLAQ-------QIIKHCIAGNIDDAYTGLKQLYDMGYSATDIITTLFRVVK 284
Query: 313 DKQKALFKALETLVETSGGDMRRA 336
+ + F LE + E MR A
Sbjct: 285 NYEMVEFLKLEFIREVGFAHMRIA 308
>gi|378727708|gb|EHY54167.1| replication factor C subunit 3/5 [Exophiala dermatitidis
NIH/UT8656]
Length = 408
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/218 (48%), Positives = 145/218 (66%), Gaps = 8/218 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV +++++ + + + LPH L YGPPGTGKTST++A Q++G
Sbjct: 46 LPWVEKYRPNTLDDVSGHKDILATINRFIEQNKLPHLLLYGPPGTGKTSTILALARQIYG 105
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFA--QQTASGFNQDGKPCP-----PFKIVILD 144
R+ +LELNASDDRGI V+R+++KTFA +Q S Q G FK++ILD
Sbjct: 106 PKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSASTQQGPSGAKFGLGAFKLIILD 165
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EAD+MT AAQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL + +
Sbjct: 166 EADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKKEDIRRL 225
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ ++ +E V A+E+LVE S GDMRRA+ LQ+C
Sbjct: 226 VDHVIAEEKVNIAPDAVESLVELSKGDMRRALNVLQAC 263
>gi|154313201|ref|XP_001555927.1| hypothetical protein BC1G_05602 [Botryotinia fuckeliana B05.10]
Length = 390
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 150/237 (63%), Gaps = 5/237 (2%)
Query: 10 LGKDAPSS-SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH 68
G DA +S K S + +PWVEKYRP T++DV Q++++ + K + LPH
Sbjct: 22 FGSDATTSKGKRSAANLPVEAEDSLPWVEKYRPDTLEDVSGHQDILATINKFVDTNRLPH 81
Query: 69 FLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASG 127
LFYGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++KTFA T
Sbjct: 82 LLFYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRGIDVVREQIKTFAS-TKQI 140
Query: 128 FNQDGKPCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLT 185
F P +K++ILDEAD+MT AQ ALRR MEK T +TRFC+I NY + L
Sbjct: 141 FASKSSSTSPGAYKLIILDEADAMTSTAQMALRRVMEKYTANTRFCVIANYTHKLSPALL 200
Query: 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
SRC++FRF PL E + + + +E+V + +A + LV S GDMRRA+ LQ+C
Sbjct: 201 SRCTRFRFSPLKEADIRVLVDKVIAEENVQINAEATDALVRLSKGDMRRALNVLQAC 257
>gi|326489719|dbj|BAK01840.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326531584|dbj|BAJ97796.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 359
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 123/301 (40%), Positives = 171/301 (56%), Gaps = 13/301 (4%)
Query: 11 GKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFL 70
G AP + K S K PWVEKYRP+++ DV +++V + + LPH L
Sbjct: 14 GAAAPPAFKGKAPLSAAAAVKSSPWVEKYRPQSLADVAAHRDIVDTIDRLTDENRLPHLL 73
Query: 71 FYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ 130
YGPPGTGKTST++A +++G Y ILELNASD+RGI V+R +++ FA + F
Sbjct: 74 LYGPPGTGKTSTILAVARKIYGSQYGNMILELNASDERGIGVVRQQIQDFASAHSLSFGA 133
Query: 131 DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190
P K+V+LDEAD+MT AQ ALRR +EK T+STRF LICN+V+ II L SRC++
Sbjct: 134 K----PAVKLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTR 189
Query: 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG 250
FRF PL + + RL++I + E + D L LV S GDMR+++ LQS +
Sbjct: 190 FRFAPLDGSHVSERLRHIIKSEGLDVDEGGLSALVRLSNGDMRKSLNILQSTH--MASQQ 247
Query: 251 IVNEDVLEVTG-VIPKPWIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
I E V TG +PK IE++ L + F K+I D+ + L D ++ M
Sbjct: 248 ITEEAVYLCTGNPMPKD-IEQIAFWLLNEPFSTSFKHIADMKMR--KGLALIDIIREVTM 304
Query: 307 L 307
Sbjct: 305 F 305
>gi|354547265|emb|CCE43999.1| hypothetical protein CPAR2_502240 [Candida parapsilosis]
Length = 337
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 191/333 (57%), Gaps = 24/333 (7%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
S K R+ +PWVEKYRP+ + +V QQ++VS +++ + LPH LFYGPPGTGKTST++
Sbjct: 2 SDKYRDN-LPWVEKYRPENLTEVYGQQDIVSTIRRFVETGKLPHLLFYGPPGTGKTSTIV 60
Query: 85 AACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILD 144
A +++G Y+ +LELNASDDRGI V+R+++K+FA T F P FK++ILD
Sbjct: 61 ALAREIYGPNYKNMVLELNASDDRGIDVVRNQIKSFA-STRQIFTSSS--SPQFKLIILD 117
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EAD+MT AQ +LRR +EK TK+ RFC++ NY + L SRC++FRF P+ E + +R
Sbjct: 118 EADAMTSVAQNSLRRIIEKYTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEAAIRSR 177
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI- 263
+ + +E V AL L++ S GDMRR++ LQ+C + G+ N + ++V +
Sbjct: 178 IDNVIIKEKVNITPDALNALLQLSQGDMRRSLNVLQAC-KAACGDDDDNSETIDVEMIYN 236
Query: 264 ----PKPW-----IEKLLKVD---SFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSL 311
P P ++ +LK D ++ L KY D + + L F DI+ +
Sbjct: 237 CVGAPHPQDIETVLDSILKQDWTTAYMTLNKYKID---KGLALIDLITGFIDIL---NDY 290
Query: 312 SDKQKALFKALETLVETSGGDMRRAITCLQSCA 344
K K + L+ L E G + +QS A
Sbjct: 291 KVKPKTRIEYLKGLSEVEYGISKGGNDRIQSSA 323
>gi|195384914|ref|XP_002051157.1| GJ14606 [Drosophila virilis]
gi|194147614|gb|EDW63312.1| GJ14606 [Drosophila virilis]
Length = 332
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 111/243 (45%), Positives = 156/243 (64%), Gaps = 12/243 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD+I +E++S + + ++ LPH LFYGPPGTGKTST++A QL+
Sbjct: 11 MPWVEKYRPNCLDDLISHEEIISTINRFINQKQLPHLLFYGPPGTGKTSTILACARQLYS 70
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++ +LELNASDDRGI ++R ++ FA T + F C FK++ILDEAD+MT+
Sbjct: 71 PAHFKSMVLELNASDDRGIGIVRGQILNFAS-TRTIF------CGTFKLIILDEADAMTN 123
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T++ RFC+ICNY+S II L SRC++FRF PL+ ML RL + ++
Sbjct: 124 DAQNALRRIIEKYTENVRFCVICNYLSKIIPALQSRCTRFRFAPLSPEQMLPRLNKVIQE 183
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPKPWIEK 270
E+V L+ + GDMR+ + LQS + IVNED V G + IE
Sbjct: 184 ENVNVTDDGKNALLTLAKGDMRKVLNVLQSTSM---AFDIVNEDNVYMCVGYPLRSEIEH 240
Query: 271 LLK 273
+L+
Sbjct: 241 MLQ 243
>gi|440638884|gb|ELR08803.1| replication factor C subunit 3/5 [Geomyces destructans 20631-21]
Length = 393
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 17 SSKTSVSTSGKTRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFL 70
SSK + N PV PWVEKYRP T++DV Q++++ + + + LPH L
Sbjct: 24 SSKQATQGKRSAANLPVEAEDTLPWVEKYRPDTLEDVSGHQDIIATINRFVETNRLPHLL 83
Query: 71 FYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQ----TA 125
YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++KTFA ++
Sbjct: 84 LYGPPGTGKTSTVLALARRIYGVKNMRQMVLELNASDDRGIDVVREQIKTFASTRQIFSS 143
Query: 126 SGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLT 185
+ GK +K++ILDEAD+MT AQ ALRR MEK T +TRFC+I NY + L
Sbjct: 144 APSEASGKSMATYKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALL 203
Query: 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
SRC++FRF PL E + + + E+E+V +A E L + S GDMRRA+ LQ+C
Sbjct: 204 SRCTRFRFSPLKERDIRVLVDKVIEEETVNITREATEALTKLSKGDMRRALNVLQAC 260
>gi|198476564|ref|XP_002132399.1| GA25212 [Drosophila pseudoobscura pseudoobscura]
gi|198137754|gb|EDY69801.1| GA25212 [Drosophila pseudoobscura pseudoobscura]
Length = 333
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 111/242 (45%), Positives = 156/242 (64%), Gaps = 12/242 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP ++DD+I E++ + + +S LPH LFYGPPGTGKTST++A QL+
Sbjct: 12 PWVEKYRPYSLDDLISHDEIILTINRFISQKQLPHLLFYGPPGTGKTSTILACARQLYPP 71
Query: 94 -MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+++ +LELNASDDRGI ++R ++ FA T + F C FK++ILDEAD+MT+
Sbjct: 72 ALFKSMVLELNASDDRGIGIVRGQILNFAS-TRTIF------CDTFKLIILDEADAMTND 124
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK T + RFC+ICNY+S II L SRC++FRF PL+ + M+ RL+ I + E
Sbjct: 125 AQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLSPDKMIPRLEQIVQSE 184
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP-KPWIEKL 271
+ + L+ S GDMR+ + LQS A +VNED + + P + IE +
Sbjct: 185 DIKITENGKKALLTLSKGDMRKVLNVLQSTAM---AFDVVNEDNVYMCAGYPLRQDIENI 241
Query: 272 LK 273
LK
Sbjct: 242 LK 243
>gi|195118794|ref|XP_002003921.1| GI18168 [Drosophila mojavensis]
gi|193914496|gb|EDW13363.1| GI18168 [Drosophila mojavensis]
Length = 332
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/243 (45%), Positives = 157/243 (64%), Gaps = 12/243 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD+I +E++S + + ++ LPH LFYGPPGTGKTST++A QL+
Sbjct: 11 MPWVEKYRPNCLDDLISHEEIISTINRFINQKQLPHLLFYGPPGTGKTSTILACARQLYS 70
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++ +LELNASDDRGI ++R ++ FA T + F C FK++ILDEAD+MT+
Sbjct: 71 PAHFKSMVLELNASDDRGIGIVRGQILNFAS-TRTIF------CGTFKLIILDEADAMTN 123
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T++ RFC+ICNY+S II L SRC++FRF PL+ M+ RL + E+
Sbjct: 124 DAQNALRRIIEKYTENVRFCIICNYLSKIIPALQSRCTRFRFAPLSPEQMMPRLNKVVEE 183
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPKPWIEK 270
E+V + L+ + GDMR+ + LQS + +VNED V G + IE
Sbjct: 184 ENVNITDDGKKALLTLAKGDMRKVLNVLQSTSM---AFDVVNEDNVYMCVGYPLRSEIEN 240
Query: 271 LLK 273
+L+
Sbjct: 241 VLQ 243
>gi|241955893|ref|XP_002420667.1| AAA ATPase family member, putative; replication factor C (RF-C)
subunit, putative [Candida dubliniensis CD36]
gi|223644009|emb|CAX41749.1| AAA ATPase family member, putative [Candida dubliniensis CD36]
Length = 339
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/262 (41%), Positives = 163/262 (62%), Gaps = 11/262 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +++V QQE+V ++K + LPH LFYGPPGTGKTST+IA +++G
Sbjct: 9 LPWVEKYRPDNLEEVKGQQEIVDTVRKFVETRKLPHLLFYGPPGTGKTSTIIALAKEIYG 68
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
+ Y++ ILELNASDDRGI V+R+++K FA + FK++ILDEAD+MT+
Sbjct: 69 SINYKDMILELNASDDRGIDVVRNQIKNFASTRQIFTKNNSINNDQFKLIILDEADAMTN 128
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ +LRR +EK TK+ RFC++ NY + L SRC++FRF P+ + + RL + +
Sbjct: 129 IAQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDISAIKDRLNIVIIK 188
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW---- 267
E+V A++ L++ S GDMRRA+ LQSC G + + +V + I P+
Sbjct: 189 ENVNISSDAIDALLKLSNGDMRRALNVLQSCKAALGDDENIEINVDMIYDCIGAPYPQDI 248
Query: 268 ---IEKLLKVD---SFQVLEKY 283
++ +LK D ++ L KY
Sbjct: 249 ETCLDSILKDDWTTAYLTLNKY 270
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 14/130 (10%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-------IEKLL 373
A++ L++ S GDMRRA+ LQSC G + + +V + I P+ ++ +L
Sbjct: 197 AIDALLKLSNGDMRRALNVLQSCKAALGDDENIEINVDMIYDCIGAPYPQDIETCLDSIL 256
Query: 374 KVD---SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 430
K D ++ L KY I++ + L F +I ++ L K + IL+ L++
Sbjct: 257 KDDWTTAYLTLNKY---KIIKGLALIDLITGFIEI-LNNYKLKSKTRLEILKGLSDIEYG 312
Query: 431 LQDGASEYIQ 440
+ G ++ IQ
Sbjct: 313 ISKGGNDKIQ 322
>gi|425772715|gb|EKV11110.1| hypothetical protein PDIG_52530 [Penicillium digitatum PHI26]
gi|425775221|gb|EKV13502.1| hypothetical protein PDIP_47760 [Penicillium digitatum Pd1]
Length = 393
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/240 (45%), Positives = 150/240 (62%), Gaps = 7/240 (2%)
Query: 9 KLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH 68
+ D S K +V+ +PWVEKYRP ++DDV Q++++ + + + LPH
Sbjct: 17 QFSSDNASGKKRTVADLPVEAQDNLPWVEKYRPSSLDDVSGHQDILATINRFVETNRLPH 76
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG 127
L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++KTFA T
Sbjct: 77 LLLYGPPGTGKTSTILALARRIYGTKNMRQMVLELNASDDRGIDVVREQIKTFAS-TKQI 135
Query: 128 FNQD-----GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQ 182
FN G P FK++ILDEAD+MT AQ ALRR ME+ T +TRFC+I NY +
Sbjct: 136 FNMAPQGTAGSPLAGFKLIILDEADAMTSTAQMALRRIMERYTSNTRFCVIANYTHKLSP 195
Query: 183 PLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
L SRC++FRF PL E + T + + E E V A+++LV S GDMRRA+ LQ+C
Sbjct: 196 ALLSRCTRFRFSPLKEVDIRTLVDKVIENEGVRMQPDAVDSLVTLSKGDMRRALNVLQAC 255
>gi|392574508|gb|EIW67644.1| hypothetical protein TREMEDRAFT_69661 [Tremella mesenterica DSM
1558]
Length = 350
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/226 (46%), Positives = 151/226 (66%), Gaps = 11/226 (4%)
Query: 17 SSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPG 76
++ +++ S K N+ VEKYRP T+D+V+ Q++ + ++K + LPH L YGPPG
Sbjct: 18 NAMSTLMASAKADNR----VEKYRPNTLDEVVSHQDITNTIEKFIEAGRLPHLLLYGPPG 73
Query: 77 TGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCP 136
TGKTST++A +L+G Y++ ILELNASDDRGI V+RD++K+FA T F++
Sbjct: 74 TGKTSTVLALARRLYGPPYQKHILELNASDDRGIDVVRDQIKSFA-MTKVLFSKG----- 127
Query: 137 PFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPL 196
FK+VILDEAD MT AAQ+ALRR +E TK+ RFC++CNYV+ I + SRC++FRF PL
Sbjct: 128 -FKLVILDEADMMTQAAQSALRRVIETHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPL 186
Query: 197 AENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
E + ++ + E+E V L++ S GDMRRA+ LQ+C
Sbjct: 187 PEKEVQRKVDDVVEKEGVNLTDDGRAALLKLSKGDMRRALNVLQAC 232
>gi|356515902|ref|XP_003526636.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
Length = 361
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/259 (43%), Positives = 157/259 (60%), Gaps = 13/259 (5%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K +PWVEKYRP+++DDV +++V + + + LPH L YGPPGTGKTST++A +L
Sbjct: 36 KAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKL 95
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+G Y+ ILELNASDDRGI V+R +++ FA + F K+V+LDEAD+MT
Sbjct: 96 YGSQYQNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKSS----VKLVLLDEADAMT 151
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRR +EK TKSTRF LICN+V+ II L SRC++FRF PL + RL+++ +
Sbjct: 152 KDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIK 211
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG-VIPKP--- 266
E + + L V S GDMR+A+ LQS + I E V TG +PK
Sbjct: 212 AEGLDVEDSGLAAFVRLSNGDMRKALNILQSTH--MASQQITEEAVYLCTGNPLPKDIEL 269
Query: 267 ---WIEKLLKVDSFQVLEK 282
W+ DSF+ +++
Sbjct: 270 ISYWLLNEQFADSFKRIDE 288
>gi|213405245|ref|XP_002173394.1| replication factor C subunit 3 [Schizosaccharomyces japonicus
yFS275]
gi|212001441|gb|EEB07101.1| replication factor C subunit 3 [Schizosaccharomyces japonicus
yFS275]
Length = 338
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/210 (46%), Positives = 148/210 (70%), Gaps = 7/210 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DDV+ +++++ L+K +S +PH LFYGPPGTGKTST++A ++++G
Sbjct: 20 LPWVEKYRPKNLDDVVAHKDIIATLEKFISTNRVPHMLFYGPPGTGKTSTILACANRIYG 79
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+R +++ELNASDDRGI V+R+++K+FA T F+ FK++ILDE D+MT A
Sbjct: 80 PNFRNQVMELNASDDRGIDVVREQIKSFA-STKQIFSS------AFKLIILDETDAMTLA 132
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK T++ RFC+ICNY++ I + SRC++FRF+PL + ++ + E+E
Sbjct: 133 AQNALRRVIEKYTRNVRFCIICNYINKIAPAIQSRCTRFRFQPLPITEIEKKVDEVAEKE 192
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ + L+ S GDMR+A+ LQ+C
Sbjct: 193 NCTISPEGKTALLRLSKGDMRKALNILQAC 222
>gi|367007966|ref|XP_003688712.1| hypothetical protein TPHA_0P01200 [Tetrapisispora phaffii CBS 4417]
gi|357527022|emb|CCE66278.1| hypothetical protein TPHA_0P01200 [Tetrapisispora phaffii CBS 4417]
Length = 335
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/243 (44%), Positives = 162/243 (66%), Gaps = 9/243 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++D+V Q ++V+ ++K ++ LPH LFYGPPGTGKTST+IA +++G
Sbjct: 11 LPWVEKYRPSSLDEVYGQPDIVNTVRKFVAEGKLPHLLFYGPPGTGKTSTIIALAKEIYG 70
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y +LELNASDDRGI V+R+++K FA T F++ FK++ILDEAD+MT+A
Sbjct: 71 KNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKLIILDEADAMTNA 123
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK TK+TRFC++ NY + L SRC++FRF+P+A + + R+ + QE
Sbjct: 124 AQNALRRIIEKYTKNTRFCILANYAYKLTPALLSRCTRFRFQPIAIDALERRMNNVVLQE 183
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQ-SCARLKGGEG-IVNEDVLEVTGVIPKPWIEK 270
+ +A + L++ S GDMRR + LQ S + + +G I E + E G+ ++K
Sbjct: 184 HLNIGQEAKDALLKVSKGDMRRIMNVLQASKSSVDTADGEITREIIYECCGICRPEDVQK 243
Query: 271 LLK 273
+LK
Sbjct: 244 ILK 246
>gi|224072550|ref|XP_002188696.1| PREDICTED: replication factor C subunit 5 [Taeniopygia guttata]
Length = 329
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 112/234 (47%), Positives = 154/234 (65%), Gaps = 18/234 (7%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+ + +++ ++++S +++ +S LPH L YGPPGTGKTST++A QL
Sbjct: 9 LPWVEKYRPQALSELVFHRDILSTVQRFISEDRLPHLLLYGPPGTGKTSTILACARQL-- 66
Query: 93 DMYRER-----ILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
YRER +LELNASDDRGI ++R + +FA T + F + FK+VILDEAD
Sbjct: 67 --YREREFSSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEAD 117
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RLQ+
Sbjct: 118 AMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQH 177
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
+ ++E V ++ LV S GDMRRA+ LQS + G + E+V TG
Sbjct: 178 VIQEEGVDVTEDGMKALVTLSSGDMRRALNILQSTSMAFG--KVTEENVYTCTG 229
Score = 38.1 bits (87), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 9/129 (6%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV-----IPNPWIEKLLKV 375
++ LV S GDMRRA+ LQS + G + E+V TG I N ++ +L
Sbjct: 190 GMKALVTLSSGDMRRALNILQSTSMAFG--KVTEENVYTCTGHPLKSDIAN-ILDWMLNQ 246
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
D K +E L+ + + + H V + +L KLA+ RL G
Sbjct: 247 DFSTAYRKIMELKTLKGLALQDILTEIHLFVHRV-DFPPSIRIQLLIKLADIEYRLAAGT 305
Query: 436 SEYIQILDL 444
SE IQ+ L
Sbjct: 306 SEKIQLSSL 314
>gi|219117762|ref|XP_002179670.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408723|gb|EEC48656.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 338
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/244 (45%), Positives = 153/244 (62%), Gaps = 12/244 (4%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
SG+ +PWVEKYRP+ ++D++ Q ++VS + + +LPH L YGPPGTGKTST++
Sbjct: 9 SGRADELQLPWVEKYRPQRLEDLVSQDDIVSSITNLIDSENLPHLLLYGPPGTGKTSTIV 68
Query: 85 AACHQLFGD--MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
AA +++G Y LELNASD RGI V+R+++K FA T FN+ K++I
Sbjct: 69 AAAKRMYGSSSAYSSMTLELNASDARGIDVVRNEIKEFAG-TKQLFNKG------IKLII 121
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT AQ ALRR +EK TK+ RFCL+CNYVS II L SRC++FRF PL+ + +
Sbjct: 122 LDEADAMTSDAQFALRRIIEKYTKNARFCLVCNYVSKIIPALQSRCTRFRFAPLSRDQIE 181
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
RL + E E ++ ++ SGGDMRR + LQS A +V+E + +T
Sbjct: 182 GRLTEVAEAEKCKTTQDGIDAILRLSGGDMRRVLNLLQSTAM---SAEVVDETSVYLTSG 238
Query: 263 IPKP 266
P P
Sbjct: 239 APLP 242
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 64/144 (44%), Gaps = 8/144 (5%)
Query: 312 SDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP---- 367
++K K ++ ++ SGGDMRR + LQS A +V+E + +T P P
Sbjct: 190 AEKCKTTQDGIDAILRLSGGDMRRVLNLLQSTAM---SAEVVDETSVYLTSGAPLPADMD 246
Query: 368 WIEKLLKVDSFQVLEKYIEDL-ILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 426
I L +FQ + I + ++ Y+ + + +M +L ++L+ ++
Sbjct: 247 QILDWLMNHNFQTACEQITAMCTMKGYALADVLAELTSKIMCLENLDSVPLGMLLDGMSN 306
Query: 427 CNARLQDGASEYIQILDLGSIVIK 450
RL G E IQI L + ++
Sbjct: 307 VEHRLAFGPDEKIQIASLVGVFVR 330
>gi|45190411|ref|NP_984665.1| AEL196Wp [Ashbya gossypii ATCC 10895]
gi|44983307|gb|AAS52489.1| AEL196Wp [Ashbya gossypii ATCC 10895]
gi|374107881|gb|AEY96788.1| FAEL196Wp [Ashbya gossypii FDAG1]
Length = 333
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 175/310 (56%), Gaps = 17/310 (5%)
Query: 25 SGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
SG RN +PW+EKYRP ++DDV Q++VV ++K + LPH LFYGPPGTGKTST+
Sbjct: 2 SGVARNANNLPWIEKYRPDSLDDVYGQRDVVETVRKFVQEGRLPHLLFYGPPGTGKTSTI 61
Query: 84 IAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A +++G YR +LELNASDDRGI V+R+++K FA T F++ FK++IL
Sbjct: 62 CALAKEIYGKNYRNMVLELNASDDRGIDVVRNQIKEFA-STRQIFSKG------FKLIIL 114
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT AAQ ALRR +EK TK+TRFC++ NY + L SRC++FRF+PLAE +
Sbjct: 115 DEADAMTSAAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLAEAAIER 174
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKGGEGIVNEDVLEVTGV 262
R+ I E + A L+ + GDMRRA+ LQ+ A L V EDV+
Sbjct: 175 RVLSIMAHEHLQLTEDARAALLRLAAGDMRRALNVLQAAKATLDDPAQPVTEDVVYDCVG 234
Query: 263 IPKPW-----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
P P ++ +L+ D L+ + L D H V L +S KQ
Sbjct: 235 APHPRDIETVVDSILRDDWATALDTVRR---VRVARGLALVDMIHGAVELLTSYDLKQPT 291
Query: 318 LFKALETLVE 327
L L +
Sbjct: 292 RIALLTHLAD 301
>gi|156841917|ref|XP_001644329.1| hypothetical protein Kpol_1066p38 [Vanderwaltozyma polyspora DSM
70294]
gi|156114969|gb|EDO16471.1| hypothetical protein Kpol_1066p38 [Vanderwaltozyma polyspora DSM
70294]
Length = 336
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 146/214 (68%), Gaps = 7/214 (3%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T + +PWVEKYRP ++D+V Q E+V+ ++K + LPH LFYGPPGTGKTST+IA
Sbjct: 7 TNRENLPWVEKYRPTSLDEVYGQNEIVNTVRKFVEEGKLPHLLFYGPPGTGKTSTIIALA 66
Query: 88 HQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
+++G Y +LELNASDDRGI V+R++VK FA T F++ FK++ILDEAD
Sbjct: 67 KEIYGKNYHNMVLELNASDDRGIDVVRNQVKDFA-STRQIFSKG------FKLIILDEAD 119
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT+AAQ +LRR +EK TK+TRFC++ NY + L SRC++FRF+P+ + R+
Sbjct: 120 AMTNAAQNSLRRIIEKYTKNTRFCILANYAYKLTPALLSRCTRFRFQPIGPAAIEQRMNN 179
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
+ +E++ D A + L++ S GDMRR + LQ+
Sbjct: 180 VIIKENIKIDDAAKKALLKVSKGDMRRVLNVLQA 213
>gi|58262376|ref|XP_568598.1| DNA replication factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|57230772|gb|AAW47081.1| DNA replication factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 327
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/272 (43%), Positives = 168/272 (61%), Gaps = 19/272 (6%)
Query: 33 VPW---VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
V W VEKYRP ++DDV+ +++ S ++K + LPH L YGPPGTGKTST++A +
Sbjct: 5 VGWDDRVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARR 64
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
L+G YR+ ILELNASDDRGI V+R+++K FA T F++ FK+VILDEAD M
Sbjct: 65 LYGPAYRKHILELNASDDRGIDVVREQIKNFA-MTKVLFSKG------FKLVILDEADMM 117
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AAQ+ALRR +E+ TK+ RFC++CNYV+ I + SRC++FRF PL E + ++ +
Sbjct: 118 TQAAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVV 177
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPKPW- 267
++E V + +++ S GDMRRA+ LQ+C IV+E V TG P P
Sbjct: 178 QKEGVNLTDDGRDAILKLSRGDMRRALNVLQAC---HAAYDIVDETAVYNCTGN-PHPRD 233
Query: 268 IEKLLK---VDSFQVLEKYIEDLILEAYSATQ 296
IE++++ D F I L +E A Q
Sbjct: 234 IERVVQSMMADEFGTAYSLITSLKIEKGLALQ 265
>gi|403224069|dbj|BAM42199.1| replication factor C subunit [Theileria orientalis strain Shintoku]
Length = 347
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 120/318 (37%), Positives = 181/318 (56%), Gaps = 21/318 (6%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T D+I ++++S L LPH LF+GPPG GKTST++A L+G
Sbjct: 8 PWVEKYRPETFQDIISHEDIMSTLMVFAEKGQLPHLLFHGPPGAGKTSTIMAIARYLYGS 67
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP---FKIVILDEADSMT 150
+LELNASD+RGI +R+++K+F++ + + + PP K++ILDEAD MT
Sbjct: 68 QRNGFVLELNASDERGIDTVREQIKSFSETSNTFSSTSANEDPPRTTLKLIILDEADQMT 127
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
+AAQ ALRR ME + + RFCLICN+++ II P+ SRC+ FRF+PL + +++ I
Sbjct: 128 NAAQNALRRIMEIYSNNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKPELVRQKIKDIAA 187
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCAR--LKGGEGIVNEDVLEVTGVIPKPW- 267
E V AL+TLV+ GDMRR + CLQ A KG + +++ +++ T +PK
Sbjct: 188 IEKVSVSECALDTLVDIGQGDMRRVLNCLQVTAMSYAKGSDVVIDSNLILATSGLPKTLE 247
Query: 268 IEKLLK----------VDSFQVLEKY----IEDLILEAYSATQLFDQFH-DIVMLASSLS 312
I+ LL+ VD L +EDL+ Y A D + ++ L L+
Sbjct: 248 IDHLLQSLMQNSFKECVDELNELHHTKGYSVEDLVRGVYKAVLKIDWPNVPVIQLLIRLA 307
Query: 313 DKQKALFKALETLVETSG 330
D ++ L T ++ +
Sbjct: 308 DIEERLSSGANTSIQIAA 325
Score = 44.7 bits (104), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 28/143 (19%)
Query: 321 ALETLVETSGGDMRRAITCLQSCAR--LKGGEGIVNEDVLEVTGVIPNPW-IEKLLK--- 374
AL+TLV+ GDMRR + CLQ A KG + +++ +++ T +P I+ LL+
Sbjct: 197 ALDTLVDIGQGDMRRVLNCLQVTAMSYAKGSDVVIDSNLILATSGLPKTLEIDHLLQSLM 256
Query: 375 -------VDSFQVLEKY----IEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 423
VD L +EDL+ Y A D + V+ +L +
Sbjct: 257 QNSFKECVDELNELHHTKGYSVEDLVRGVYKAVLKIDWPNVPVIQ-----------LLIR 305
Query: 424 LAECNARLQDGASEYIQILDLGS 446
LA+ RL GA+ IQI L S
Sbjct: 306 LADIEERLSSGANTSIQIAALVS 328
>gi|302813098|ref|XP_002988235.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
gi|302819400|ref|XP_002991370.1| hypothetical protein SELMODRAFT_236274 [Selaginella moellendorffii]
gi|300140763|gb|EFJ07482.1| hypothetical protein SELMODRAFT_236274 [Selaginella moellendorffii]
gi|300143967|gb|EFJ10654.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
Length = 332
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 100/208 (48%), Positives = 138/208 (66%), Gaps = 4/208 (1%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP ++ DV ++++ + + + LPH L YGPPGTGKTST++A +L+G
Sbjct: 10 PWVEKYRPASLADVAAHKDIIDTIDRLTAENKLPHLLLYGPPGTGKTSTILAVARKLYGP 69
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
++ ILELNASDDRGI V+R +++ FA + F + K++ILDEAD+MT A
Sbjct: 70 QFQNMILELNASDDRGIDVVRQQIQDFASTQSISFGEKAN----VKLIILDEADAMTKDA 125
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q +LRR +EK TK+TRFCLICNYVS II L SRC++FRF PL + RL+++ +QE
Sbjct: 126 QFSLRRIIEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFPPLQAQHVRERLEFVIDQER 185
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQS 241
+ L +V S GDMR+A+ LQS
Sbjct: 186 LDVTEDGLSAIVRLSNGDMRKALNILQS 213
>gi|448115886|ref|XP_004202928.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
gi|359383796|emb|CCE79712.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
Length = 331
Score = 216 bits (549), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 99/210 (47%), Positives = 144/210 (68%), Gaps = 7/210 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++D+V Q ++VS ++K + LPH LFYGPPGTGKTST+IA +++G
Sbjct: 10 LPWVEKYRPSSLDEVNGQNDIVSTVRKFVHEGKLPHLLFYGPPGTGKTSTIIALAKEIYG 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR +LELNASDDRGI V+R+++K FA T F++ FK++ILDEAD+MT
Sbjct: 70 SNYRNMVLELNASDDRGIDVVRNQIKEFA-STMQIFSKG------FKLIILDEADAMTST 122
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ +LRR +EK TK+TRFC++ NY + L SRC++FRF P+++ + T + + +E
Sbjct: 123 AQNSLRRIIEKYTKNTRFCILANYAHKLNPALVSRCTRFRFSPISQEAVNTTIATVITKE 182
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ A+E+L + GDMR+A+ LQ+C
Sbjct: 183 KLKISSDAIESLCTLARGDMRKALNVLQAC 212
>gi|385301010|gb|EIF45243.1| rfc3p [Dekkera bruxellensis AWRI1499]
Length = 330
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 124/286 (43%), Positives = 173/286 (60%), Gaps = 27/286 (9%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+ +D V QQE + ++K +PH LFYGPPG+GKTST+IA +++G
Sbjct: 10 LPWVEKYRPQNLDQVYGQQETIQTIRKFAQDGRIPHLLFYGPPGSGKTSTIIALAREIYG 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPCPPFKIVILDEADSM 149
YR +LELNASDDRGI +RD++K FA Q +SG FK+VILDEAD+M
Sbjct: 70 KNYRNMVLELNASDDRGIDXVRDQIKNFASTRQIFSSG----------FKLVILDEADAM 119
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+ AQ ALRR +EK TK+TRFC++ NY I L SRC++FRF PLA + + R+ +
Sbjct: 120 TNTAQNALRRIIEKYTKNTRFCILANYAHKINPALMSRCTRFRFSPLAISAIEERVDTVI 179
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKGGEGIVNEDVL-EVTGVIPKP- 266
++E + + A + LV S GDMR+A+ LQ+C A L E + D++ E G P+P
Sbjct: 180 KEEKLKIEKXAEKCLVALSKGDMRKALNVLQACAAALDKPEDTIXVDMIYECVGA-PRPK 238
Query: 267 WIEKLLK-------VDSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305
IE +L DS+ V+ K + E + L + F DI+
Sbjct: 239 SIEVILNAIMERDWTDSYSVMNKIRK---TEGLALIDLIEGFMDIL 281
>gi|126458633|ref|YP_001054911.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
gi|158513488|sp|A3MS28.1|RFCS_PYRCJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|126248354|gb|ABO07445.1| Replication factor C [Pyrobaculum calidifontis JCM 11548]
Length = 326
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 102/209 (48%), Positives = 138/209 (66%), Gaps = 7/209 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ ++V++ +EV + L++ + +LPH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGIGVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NYVS II P+ SRC+ FRF P+ + M RL+ I E V
Sbjct: 119 QALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLREIARSEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCA 243
A++ + E S GDMR+AI LQ A
Sbjct: 179 ELKDDAIDLIYEISEGDMRKAINLLQVAA 207
>gi|448515699|ref|XP_003867395.1| Rcf3 heteropentameric replication factor C subunit [Candida
orthopsilosis Co 90-125]
gi|380351734|emb|CCG21957.1| Rcf3 heteropentameric replication factor C subunit [Candida
orthopsilosis]
Length = 333
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 119/320 (37%), Positives = 181/320 (56%), Gaps = 17/320 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+ + +V QQ++V+ +++ + LPH LFYGPPGTGKTST+IA +++G
Sbjct: 9 LPWVEKYRPENLTEVYGQQDIVNTIRRFVETGKLPHLLFYGPPGTGKTSTIIALAREIYG 68
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y+ +LELNASDDRGI V+R+++K+FA T F P FK++ILDEAD+MT
Sbjct: 69 PHYKNMVLELNASDDRGIDVVRNQIKSFA-STRQIFTSSSS--PQFKLIILDEADAMTSV 125
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ +LRR +E+ TK+ RFC++ NY + L SRC++FRF P+ E + +R+ + +E
Sbjct: 126 AQNSLRRIIERYTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEEAIRSRIDNVIIKE 185
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW----- 267
V AL L+ S GDMRR++ LQ+C G + ++ +++ P P
Sbjct: 186 KVNITPDALNALLRLSQGDMRRSLNVLQACKAACGDDETIDIEMIYNCVGAPHPQDIEAV 245
Query: 268 IEKLLKVD---SFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALET 324
++ +LK D ++ L KY D L D + + + K K + L+
Sbjct: 246 LDSILKQDWTTAYLTLNKYKID------KGLALVDLITGFIEILNDYKVKPKTRIEYLKG 299
Query: 325 LVETSGGDMRRAITCLQSCA 344
L E G + +QS A
Sbjct: 300 LCEVEYGISKGGNDKIQSSA 319
>gi|406863129|gb|EKD16177.1| activator 1 subunit 3 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 395
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 115/268 (42%), Positives = 161/268 (60%), Gaps = 26/268 (9%)
Query: 14 APSSSKTSVSTSGKTRNK--------PV------PWVEKYRPKTIDDVIEQQEVVSVLKK 59
AP++ T + +S T +K PV PWVEKYRP T++DV Q++++ + K
Sbjct: 13 APAAQDTVMFSSDNTNSKGKRSAANLPVEAEDSLPWVEKYRPDTLEDVSGHQDILATITK 72
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVK 118
+ LPH L YGPPGTGKTST++A Q++G R+ +LELNASDDRGI V+R+++K
Sbjct: 73 FVDTNRLPHLLLYGPPGTGKTSTILALARQIYGSKNMRQMVLELNASDDRGIDVVREQIK 132
Query: 119 TFAQQTASGFNQD----GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
TFA T F + P +K++ILDEAD+MT AQ ALRR MEK T +TRFC+I
Sbjct: 133 TFAS-TKQIFTMNKTSTSASMPTYKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIA 191
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NY + L SRC++FRF PL E + + + +E+V + A + LV+ S GDMRR
Sbjct: 192 NYTHKLSPALLSRCTRFRFSPLKEADIRVLVDKVITEENVQINESATDALVKLSKGDMRR 251
Query: 235 AITCLQSCA------RLKGGEGIVNEDV 256
A+ LQ+C +KG I +D+
Sbjct: 252 ALNVLQACHASSTPLHIKGTPKIAEKDI 279
>gi|256811337|ref|YP_003128706.1| replication factor C small subunit [Methanocaldococcus fervens
AG86]
gi|256794537|gb|ACV25206.1| Replication factor C [Methanocaldococcus fervens AG86]
Length = 316
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 111/227 (48%), Positives = 144/227 (63%), Gaps = 9/227 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPKT+D+++ Q E+V LKK + +PH LF GPPG GKT+ + LFG+
Sbjct: 4 PWVEKYRPKTLDEIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKTTAALCLARDLFGE 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+RE LELNASD+RGI VIR KVK FA+ G PFKI+ LDE+D++T A
Sbjct: 64 NWRENFLELNASDERGIDVIRTKVKDFARTKPIG-------DVPFKIIFLDESDALTPDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTMEK + RF L CNY S II P+ SRC+ FRF PL + + +L+ I E+E
Sbjct: 117 QNALRRTMEKYSDVCRFILSCNYPSKIIPPIQSRCAIFRFSPLKKEDIAKKLKEIAEKEG 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVT 260
+ LE ++ S GDMR+AI LQ+ A L E I +E V +V+
Sbjct: 177 LKLTESGLEAIIYVSEGDMRKAINVLQTAAAL--SEVIDDEIVYKVS 221
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 70/130 (53%), Gaps = 17/130 (13%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQV 380
LE ++ S GDMR+AI LQ+ A L E I +E V +V+ ++K++++
Sbjct: 183 GLEAIIYVSEGDMRKAINVLQTAAAL--SEVIDDEIVYKVSSRARPEEVKKMMEL----A 236
Query: 381 LE-KYIE--DLILE-----AYSATQLFDQ-FHDIVMSASSLSDKQKALILEKLAECNARL 431
LE K++E DL+ + S + +Q F +I + + +++K + + + E + R+
Sbjct: 237 LEGKFVEARDLLYKLMVEWGMSGEDILNQMFREI--NNLDIDERKKVELADAIGETDFRI 294
Query: 432 QDGASEYIQI 441
+GA+E IQ+
Sbjct: 295 VEGANERIQL 304
>gi|390346340|ref|XP_003726529.1| PREDICTED: replication factor C subunit 5-like [Strongylocentrotus
purpuratus]
Length = 342
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 151/238 (63%), Gaps = 10/238 (4%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
S +K +PWVEKYRP ++DD+I E+++ ++K + LPH LFYGPPGTGKTST++
Sbjct: 2 SRANEHKNLPWVEKYRPNSLDDLISHTEIINTIQKFIKQDRLPHLLFYGPPGTGKTSTIL 61
Query: 85 AACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A QL+ + +LELNASDDRGI ++R + FA T + F FK+VIL
Sbjct: 62 AVAKQLYAPKEFNSMVLELNASDDRGIGIVRGSILNFAS-TRTIFKSG------FKLVIL 114
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT+ AQ ALRR +EK T++TRFC ICNY+S II L SRC++FRF PL ++
Sbjct: 115 DEADAMTNDAQNALRRVIEKFTENTRFCFICNYLSKIIPALQSRCTRFRFGPLDNQQIVP 174
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
RL+++ +E+V + L+ + GDMRR I LQS + E + E+V TG
Sbjct: 175 RLEFVVREENVDMTEDGKKALITLAKGDMRRVINILQSTS--MAHEKVTEENVYLCTG 230
>gi|126137263|ref|XP_001385155.1| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
gi|126092377|gb|ABN67126.1| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
Length = 322
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 110/233 (47%), Positives = 152/233 (65%), Gaps = 10/233 (4%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY 95
VEKYRP T+D+V Q+E+V +KK LPH LFYGPPGTGKTST+IA +++G Y
Sbjct: 3 VEKYRPSTLDEVYGQEEIVQTVKKFAHENRLPHLLFYGPPGTGKTSTIIALAREIYGTNY 62
Query: 96 RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
+ +LELNASDDRGI V+R+++K FA T F++ FK++ILDEAD+MT AQ
Sbjct: 63 KNMVLELNASDDRGIDVVRNQIKNFA-STMQIFSRG------FKLIILDEADAMTAVAQN 115
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
+LRR +EK TK+TRFC++ NY + L SRC++FRF P++E+ + R+Q + +ES+
Sbjct: 116 SLRRIIEKYTKNTRFCILANYAHKLNPALLSRCTRFRFHPISEDAIKDRIQNVIIKESLK 175
Query: 216 CDFKALETLVETSGGDMRRAITCLQSC--ARLKGGEGIVNEDVLEVTGVIPKP 266
D A L++ S GDMRRA+ LQ+C A E I + + E G P P
Sbjct: 176 IDPPAEAALLKLSKGDMRRALNVLQACKSAVDSADEEITEDMIYECVGA-PHP 227
>gi|340505649|gb|EGR31962.1| replication factor c subunit, putative [Ichthyophthirius
multifiliis]
Length = 359
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 142/209 (67%), Gaps = 6/209 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGAD-LPHFLFYGPPGTGKTSTMIAACHQLF 91
+PWVEKYRP T+ D+I + +V + K ++ + LP+ LFYGPPGTGKTST++A QL+
Sbjct: 19 IPWVEKYRPDTLKDLISHEFIVMTITKFINEQNKLPNLLFYGPPGTGKTSTIVAIAKQLY 78
Query: 92 GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
G+ Y++ +LELNASDDRGI V+RD++KTFA + F+ GK K++ILDEAD MT+
Sbjct: 79 GNSYKQMVLELNASDDRGINVVRDQIKTFA--GTANFSAAGKGT---KLIILDEADQMTN 133
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK + + RFCLICNYVS II L SRC++F+FK + R++ IC
Sbjct: 134 QAQFALRRIIEKYSNNARFCLICNYVSKIIPALQSRCTRFKFKHIPIEDAQKRIEEICLI 193
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQ 240
E + D LE + + GDMRR + LQ
Sbjct: 194 EKIKYDQSGLEAIFKLCDGDMRRVVNMLQ 222
>gi|449464168|ref|XP_004149801.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
gi|449499057|ref|XP_004160708.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
Length = 363
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 119/269 (44%), Positives = 158/269 (58%), Gaps = 12/269 (4%)
Query: 19 KTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTG 78
K S + K +PWVEK+RPK++ DV +++V + K S LPH L YGPPGTG
Sbjct: 26 KNVASPAAAPEGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTG 85
Query: 79 KTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPF 138
KTST++A +L+G Y ILELNASDDRGI V+R +++ FA + F
Sbjct: 86 KTSTILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKAS----V 141
Query: 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAE 198
K+V+LDEAD+MT AQ ALRR +EK TK+TRF LICN+V+ II L SRC++FRF PL
Sbjct: 142 KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDN 201
Query: 199 NTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE 258
+ RL+Y+ E E + L LV GDMR+A+ LQS + I E V
Sbjct: 202 FHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALNILQSTH--MASQHITEEAVYL 259
Query: 259 VTG-VIPKPWIEKLLKVDSFQVLEKYIED 286
TG +PK IE++ SF +L + D
Sbjct: 260 CTGNPMPKD-IEQI----SFWLLNEPFSD 283
>gi|195146716|ref|XP_002014330.1| GL19009 [Drosophila persimilis]
gi|194106283|gb|EDW28326.1| GL19009 [Drosophila persimilis]
Length = 333
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 110/242 (45%), Positives = 156/242 (64%), Gaps = 12/242 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP ++DD+I E++ + + +S LPH L+YGPPGTGKTST++A QL+
Sbjct: 12 PWVEKYRPYSLDDLISHDEIILTINRFISQKQLPHLLYYGPPGTGKTSTILACARQLYPP 71
Query: 94 -MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+++ +LELNASDDRGI ++R ++ FA T + F C FK++ILDEAD+MT+
Sbjct: 72 ALFKSMVLELNASDDRGIGIVRGQILNFAS-TRTIF------CDTFKLIILDEADAMTND 124
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK T + RFC+ICNY+S II L SRC++FRF PL+ + M+ RL+ I + E
Sbjct: 125 AQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLSPDKMIPRLEQIVQSE 184
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP-KPWIEKL 271
+ + L+ S GDMR+ + LQS A +VNED + + P + IE +
Sbjct: 185 DIKITENGKKALLTLSKGDMRKVLNVLQSTAM---AFDVVNEDNVYMCAGYPLRQDIENI 241
Query: 272 LK 273
LK
Sbjct: 242 LK 243
>gi|452205944|ref|YP_007486066.1| replication factor C small subunit [Natronomonas moolapensis
8.8.11]
gi|452082044|emb|CCQ35295.1| replication factor C small subunit [Natronomonas moolapensis
8.8.11]
Length = 324
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 98/232 (42%), Positives = 150/232 (64%), Gaps = 11/232 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+ +D+++ + + LK+ ++ DLPH LF GP GTGKT++ IA +++GD
Sbjct: 14 WIEKYRPQALDEIVGHEGITERLKQYINQQDLPHLLFAGPAGTGKTTSSIAVAKEIYGDD 73
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD RGI V+RD++K+FA+ + G++ +++ LDEAD++T AQ
Sbjct: 74 WRENFLELNASDQRGIDVVRDRIKSFARASFGGYDH--------RVIFLDEADALTSEAQ 125
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL E + +++ I E E +
Sbjct: 126 SALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGEAAIEEQIEAIAEAEGI 185
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP 266
++ LV + GDMR+AI LQ+ A + G+V+E+ + +P
Sbjct: 186 EITDDGMDALVYAAAGDMRKAINGLQAAAVVG---GVVDEEAVYTITSTARP 234
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEKLLKV---D 376
++ LV + GDMR+AI LQ+ A + G+V+E+ V +T IE ++
Sbjct: 191 GMDALVYAAAGDMRKAINGLQAAAVVG---GVVDEEAVYTITSTARPEEIETMVSAALDG 247
Query: 377 SFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
F ++ L+ + + + DQ H V L +++ ++E++ E + R+ GA
Sbjct: 248 DFTAARAQLDTLLTDVGIAGGDIIDQMHRSVWE-FDLGEREAVRLMERVGEADYRITAGA 306
Query: 436 SEYIQ 440
+E IQ
Sbjct: 307 NEQIQ 311
>gi|448364052|ref|ZP_21552646.1| replication factor C small subunit [Natrialba asiatica DSM 12278]
gi|445644940|gb|ELY97947.1| replication factor C small subunit [Natrialba asiatica DSM 12278]
Length = 331
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 171/294 (58%), Gaps = 18/294 (6%)
Query: 13 DAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFY 72
DA ++ + ST GKT W+EKYRP+ +D++ + +V L++ + DLPH +F
Sbjct: 3 DADVDTEVAESTPGKTE----VWIEKYRPERLDEIKGHENIVPRLERYVEQDDLPHLMFA 58
Query: 73 GPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
GP GTGKT+ A +++GD +RE LELNASD RGI V+RD++K FA+ + G++
Sbjct: 59 GPAGTGKTTAAQAIAREVYGDDWRENFLELNASDQRGIDVVRDRIKDFARASFGGYDH-- 116
Query: 133 KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FR
Sbjct: 117 ------RIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFR 170
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
F L E+ + +++ I E E + ++ LV + GDMR+AI LQ+ A + GE +
Sbjct: 171 FTELTEDAIEAQVREIAETEGIEVTDDGVDALVYAADGDMRKAINALQAAAVM--GETVD 228
Query: 253 NEDVLEVTGVIPKPWIEKLLK---VDSFQVLEKYIEDLILE-AYSATQLFDQFH 302
E V +T +E+++ F +EDL+ + + + DQ H
Sbjct: 229 EETVFAITATARPEEVEEMVDHAIAGDFTAARAALEDLLTDRGLAGGDVIDQLH 282
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDS 377
++ LV + GDMR+AI LQ+ A + GE + E V +T +E+++
Sbjct: 198 GVDALVYAADGDMRKAINALQAAAVM--GETVDEETVFAITATARPEEVEEMVDHAIAGD 255
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALI--LEKLAECNARLQDG 434
F +EDL+ + + + DQ H SA + ++A + LE+L E + R+ +G
Sbjct: 256 FTAARAALEDLLTDRGLAGGDVIDQLH---RSAWTFDIPEQATVRLLERLGEVDFRITEG 312
Query: 435 ASEYIQI 441
A+E +Q+
Sbjct: 313 ANERLQL 319
>gi|448732321|ref|ZP_21714602.1| replication factor C small subunit [Halococcus salifodinae DSM
8989]
gi|445804894|gb|EMA55124.1| replication factor C small subunit [Halococcus salifodinae DSM
8989]
Length = 325
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 114/300 (38%), Positives = 175/300 (58%), Gaps = 21/300 (7%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+ +V+ + +V L+ ++ DLPH LF GP G GKT++ +A +++GD
Sbjct: 15 WIEKYRPETLANVVGHENIVGRLESYVAQNDLPHLLFSGPAGVGKTTSAMAIAREVYGDD 74
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI V+RD++K FA+ + G++ ++I+ LDEAD++T AQ
Sbjct: 75 WRENFLELNASDERGIDVVRDRIKDFARTSFGGYD--------YRIIFLDEADALTSDAQ 126
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ +TRF L CNY S II P+ SRC+ FRF PLAE + ++ + E+E +
Sbjct: 127 SALRRTMEQFANNTRFILSCNYSSQIIDPIQSRCAVFRFGPLAEEAVGEYVRQVAEREGI 186
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP-----WIE 269
++ LV + GDMR+A+ LQ+ A EG V+++ + +P +E
Sbjct: 187 EVTDDGVDALVYAADGDMRKALNGLQAAATT---EGAVDDEAVYGITATARPEEIEAMVE 243
Query: 270 KLLKVDSFQVLEKYIEDLILEA-YSATQLFDQFHDIVMLASSLSDKQKALFKALETLVET 328
+ L D F ++DL+ +A + DQ H A S A + LE + ET
Sbjct: 244 RALDGD-FTAARAKLDDLLTDAGLGGGDVIDQLH---RSAWSFDLDDAATVRLLERVGET 299
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 7/121 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDS- 377
++ LV + GDMR+A+ LQ+ A +G + +E V +T IE +++ +D
Sbjct: 192 GVDALVYAADGDMRKALNGLQAAATTEG--AVDDEAVYGITATARPEEIEAMVERALDGD 249
Query: 378 FQVLEKYIEDLILEA-YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F ++DL+ +A + DQ H S L D +LE++ E + R+ GA+
Sbjct: 250 FTAARAKLDDLLTDAGLGGGDVIDQLHRSAWS-FDLDDAATVRLLERVGETDYRITQGAN 308
Query: 437 E 437
E
Sbjct: 309 E 309
>gi|429863915|gb|ELA38322.1| replication factor c subunit 3 [Colletotrichum gloeosporioides Nara
gc5]
Length = 389
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 111/245 (45%), Positives = 152/245 (62%), Gaps = 15/245 (6%)
Query: 13 DAPSSSKTSVSTSGK-----TRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCL 61
DAP+S + S+ K N PV PWVEKYRP ++DV Q++++ + K +
Sbjct: 11 DAPASKDITFSSDAKQGKRSAANLPVEAEDSLPWVEKYRPVNLNDVSGHQDILATINKFV 70
Query: 62 SGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTF 120
LPH L YGPPGTGKTST++A +++G + R+ +LELNASDDRGI V+R+++KTF
Sbjct: 71 DSNRLPHLLLYGPPGTGKTSTILALARRIYGAENMRQMVLELNASDDRGIDVVREQIKTF 130
Query: 121 A---QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYV 177
A Q G +K++ILDEAD+MT+ AQ ALRR MEK T +TRFC+I NY
Sbjct: 131 ASTKQIFTLGPAAKAGGMASYKLIILDEADAMTNTAQMALRRIMEKYTVNTRFCIIANYS 190
Query: 178 SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAIT 237
+ L SRC++FRF PL E + + + E+E V +A E LV+ S GDMRRA+
Sbjct: 191 HKLSPALLSRCTRFRFSPLKERDIRVLVDKVIEEEHVKIMSEATEALVKLSKGDMRRALN 250
Query: 238 CLQSC 242
LQ+C
Sbjct: 251 VLQAC 255
>gi|225426826|ref|XP_002283246.1| PREDICTED: replication factor C subunit 2 [Vitis vinifera]
gi|297742576|emb|CBI34725.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 127/318 (39%), Positives = 181/318 (56%), Gaps = 21/318 (6%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTS 81
+++S N +PWVEKYRP + D++ ++ VS L+ ++P+ + GPPGTGKT+
Sbjct: 1 MASSSSMSNYDMPWVEKYRPTKVADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTT 60
Query: 82 TMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIV 141
+++A H+L G YRE +LELNASDDRGI V+R+K+K FAQ+ + P KIV
Sbjct: 61 SVLALAHELLGANYREAVLELNASDDRGIDVVRNKIKMFAQKKVT------LPSGSHKIV 114
Query: 142 ILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTM 201
ILDEADSMT AQ ALRRTME + STRF L CN S II+P+ SRC+ RF L++ +
Sbjct: 115 ILDEADSMTTGAQQALRRTMEIYSNSTRFALACNISSKIIEPIQSRCAIVRFSRLSDQEI 174
Query: 202 LTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
L RL + E E V + LE ++ T+ GDMR+A+ LQ A G + E+V +V
Sbjct: 175 LGRLMVVVEAEKVPFVPEGLEAIIFTADGDMRQALNNLQ--ATYSGFRFVNQENVFKVCD 232
Query: 262 VIPKPW-IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHD----IVMLASSLSDKQK 316
P P ++ +++ VLE +D Y QL+D + I L + +
Sbjct: 233 Q-PHPLHVKNMVR----NVLEGKFDD---ACYGLKQLYDLGYSPTDIITTLFRIIKNYDM 284
Query: 317 ALFKALETLVETSGGDMR 334
A + LE + ET MR
Sbjct: 285 AEYLKLEFMKETGFAHMR 302
>gi|296421944|ref|XP_002840523.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636741|emb|CAZ84714.1| unnamed protein product [Tuber melanosporum]
Length = 387
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 146/214 (68%), Gaps = 5/214 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T++DV +++++ + K + LPH LFYGPPGTGKTST++A ++G
Sbjct: 43 LPWVEKYRPDTLNDVSGHEDILTTINKFVQTNRLPHLLFYGPPGTGKTSTILALARHIYG 102
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPCPPFKIVILDEADS 148
R+++LELNASDDRGI+V+R+++KTFA Q + DG+ FK++ILDEAD+
Sbjct: 103 AHNIRQQVLELNASDDRGIEVVREQIKTFASTKQIFGASTKTDGE-LGSFKLIILDEADA 161
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL + + R+ ++
Sbjct: 162 MTSTAQNALRRIMEKYTANTRFCIIANYTHKLNAALLSRCTRFRFSPLPIDALRRRVDHV 221
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E V A++ L++ S GDMRR++ LQ+C
Sbjct: 222 IDAEKVKITPSAVDALLQLSRGDMRRSLNVLQAC 255
>gi|367036204|ref|XP_003667384.1| hypothetical protein MYCTH_2313161 [Myceliophthora thermophila ATCC
42464]
gi|347014657|gb|AEO62139.1| hypothetical protein MYCTH_2313161 [Myceliophthora thermophila ATCC
42464]
Length = 389
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 111/243 (45%), Positives = 151/243 (62%), Gaps = 12/243 (4%)
Query: 11 GKDAPSSSKTSVSTSGKTRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGA 64
KD SS + N PV PWVEKYRP T+ DV Q++++ + K +
Sbjct: 15 SKDITFSSDNTAKGKRSAANLPVEAEDSLPWVEKYRPATLADVSGHQDILATINKFVDSN 74
Query: 65 DLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQ 123
LPH LFYGPPGTGKTST++A +++G + R+ +LELNASDDRGI V+R+++KTFA
Sbjct: 75 RLPHLLFYGPPGTGKTSTILALARRIYGAENMRQMVLELNASDDRGIDVVREQIKTFAS- 133
Query: 124 TASGFNQDGKPC----PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
T F+ FK++ILDEAD+MT+ AQ ALRR MEK T +TRFC+I NY
Sbjct: 134 TKQIFSMSASATRSGIANFKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYSHK 193
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
+ L SRC++FRF PL E + + + E+E+V +A ++LV S GDMRRA+ L
Sbjct: 194 LSPALLSRCTRFRFSPLKEQDIRGLIDKVIEEENVKIMPEATDSLVRLSKGDMRRALNVL 253
Query: 240 QSC 242
Q+C
Sbjct: 254 QAC 256
>gi|442754535|gb|JAA69427.1| Putative replication factor c subunit rfc5 [Ixodes ricinus]
Length = 328
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 157/241 (65%), Gaps = 10/241 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD+I ++++S + + ++ LPH LFYGPPGTGKTST++A Q++G
Sbjct: 11 LPWVEKYRPNKLDDLIAHEDIISTINRFINEDRLPHLLFYGPPGTGKTSTILACARQIYG 70
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
+ +LELNASDDRGI ++R ++ FA T S F FK++ILDEAD+MT+
Sbjct: 71 PKEFGSMVLELNASDDRGIGIVRGEILNFAS-TKSIFKSG------FKLIILDEADAMTN 123
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T++ RFCLICNY+S II L SRC++FRF PL+ + M R++Y+ EQ
Sbjct: 124 DAQNALRRVIEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLSLSQMSPRIEYVIEQ 183
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL 271
E + + L++ + GDMR+A+ LQS + E + +V + G+ K I +
Sbjct: 184 ERLTVTDDGKKALMDLAQGDMRKALNILQSTS--MAFEEVTENNVYQCVGLPLKSDISNM 241
Query: 272 L 272
+
Sbjct: 242 V 242
>gi|195434144|ref|XP_002065063.1| GK15259 [Drosophila willistoni]
gi|194161148|gb|EDW76049.1| GK15259 [Drosophila willistoni]
Length = 331
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 116/260 (44%), Positives = 162/260 (62%), Gaps = 16/260 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++D+I +E+VS + + + LPH LFYGPPGTGKTST++A QL+
Sbjct: 10 IPWVEKYRPNNLEDLISHEEIVSTINRFIGQKQLPHLLFYGPPGTGKTSTILACARQLYT 69
Query: 93 D-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++ +LELNASDDRGI ++R ++ FA T + F C FK++ILDEAD+MT+
Sbjct: 70 PAQFKSMVLELNASDDRGIGIVRGQILNFAS-TRTIF------CGTFKLIILDEADAMTN 122
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T++ RFC+ICNY+S II L SRC++FRF PL+ ML RL I E
Sbjct: 123 DAQNALRRIIEKYTENVRFCVICNYLSKIIPALQSRCTRFRFAPLSPEQMLPRLDKIVEA 182
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP-----KP 266
E+V + L+ + GDMR+ + LQS + E VNE+ + + P +
Sbjct: 183 EAVTITDDGKKALLTLAKGDMRKVLNVLQSTV-MAFNE--VNENNVYMCVGYPLKQDTEQ 239
Query: 267 WIEKLLKVDSFQVLEKYIED 286
+ LL +SF+ K IED
Sbjct: 240 ILNALLSGESFKAAFKTIED 259
>gi|399575998|ref|ZP_10769755.1| replication factor c small subunit [Halogranum salarium B-1]
gi|399238709|gb|EJN59636.1| replication factor c small subunit [Halogranum salarium B-1]
Length = 323
Score = 214 bits (545), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 101/232 (43%), Positives = 152/232 (65%), Gaps = 11/232 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DDV Q+++V L+ ++ DLPH LF GP G GKT+ A +++GD
Sbjct: 14 WIEKYRPQTLDDVYGQEDIVDRLESYIAQHDLPHLLFAGPAGIGKTTCATAIAREVYGDD 73
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD+RGI V+RD++K FA+ + G + ++I+ LDEADS+T AQ
Sbjct: 74 WRGNFLELNASDERGIDVVRDRIKNFARASFGGHD--------YRIIFLDEADSLTSDAQ 125
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL+++ + +++ I ++E +
Sbjct: 126 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFAPLSDDAVAGQIRKIADREGI 185
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP 266
+ L+ LV + GDMRRAI LQ+ A G+V+E+ + + +P
Sbjct: 186 EMTDEGLDALVYAADGDMRRAINSLQAAATTG---GVVDEEAVYLITSTARP 234
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 9/127 (7%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----WIEKLLK 374
+ L+ LV + GDMRRAI LQ+ A G+V+E+ + + P + ++
Sbjct: 190 EGLDALVYAADGDMRRAINSLQAAATTG---GVVDEEAVYLITSTARPEEIESMVTAAIE 246
Query: 375 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
D Q K L + + DQ H L ++ ++E++ E + R+ +G
Sbjct: 247 GDFAQARSKLDTLLTDTGMAGGDIIDQLHRGAWD-FGLDQRETVRLMERIGEADYRITEG 305
Query: 435 ASEYIQI 441
A+E +Q+
Sbjct: 306 ANEQVQL 312
>gi|448113261|ref|XP_004202306.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
gi|359465295|emb|CCE89000.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
Length = 331
Score = 214 bits (545), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 101/226 (44%), Positives = 152/226 (67%), Gaps = 8/226 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++D+V Q ++VS ++K + LPH LFYGPPGTGKTST+ A +++G
Sbjct: 10 LPWVEKYRPSSLDEVNGQNDIVSTVRKFVHEGKLPHLLFYGPPGTGKTSTITALAKEIYG 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR +LELNASDDRGI V+R+++K FA T F++ FK++ILDEAD+MT
Sbjct: 70 SNYRNMVLELNASDDRGIDVVRNQIKEFA-STMQIFSKG------FKLIILDEADAMTST 122
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ +LRR +EK TK+TRFC++ NY + L SRC++FRF P+++ + T + + +E
Sbjct: 123 AQNSLRRIIEKYTKNTRFCILANYAHKLNPALVSRCTRFRFSPISQEAVNTTIATVITKE 182
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKGGEGIVNEDVL 257
+ +A+E+L + GDMR+A+ LQ+C A L+ ++ D++
Sbjct: 183 QLKISSEAIESLCALARGDMRKALNVLQACKASLQDDNDEIDTDMI 228
>gi|70949672|ref|XP_744225.1| replication factor C3 [Plasmodium chabaudi chabaudi]
gi|56524090|emb|CAH80967.1| replication factor C3, putative [Plasmodium chabaudi chabaudi]
Length = 328
Score = 214 bits (545), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 116/279 (41%), Positives = 172/279 (61%), Gaps = 20/279 (7%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY 95
VEKYRP ++D+I ++V+S ++K + +LPH L +GPPGTGKTST++A C +L+GD
Sbjct: 1 VEKYRPGVLNDIISHEQVISTIRKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGDSR 60
Query: 96 RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
+LELNASDDRGI V+R+++KTFA ++ + +N + K++ILDEAD MT AQ
Sbjct: 61 SSFVLELNASDDRGITVVREQIKTFA-ESKNHYNICER--TSLKLIILDEADHMTFPAQN 117
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
A+RR ME K+ RFCLICNYV+ I + SRC+ FRF PL E ML + I + E+V
Sbjct: 118 AMRRIMENYAKNVRFCLICNYVNKITPAIQSRCTSFRF-PLKEEYMLNKALDIAKSENVN 176
Query: 216 CDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP-----WIEK 270
+E+L+ GDMRR + CLQ + L +++E+V+ T IP P +E
Sbjct: 177 ITKNGVESLIRVGRGDMRRILNCLQVVS-LSHKNMVIDENVILSTLDIPLPSEIKFILEH 235
Query: 271 LLKV---DSFQVLEKY-------IEDLILEAYSATQLFD 299
L K +S++++ K I+D+++ Y A +D
Sbjct: 236 LTKSTIKESYEIITKLQEDKGYSIKDIMICLYEAVLTYD 274
Score = 45.1 bits (105), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 13/139 (9%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----WIEKLLK 374
+E+L+ GDMRR + CLQ + L +++E+V+ T IP P +E L K
Sbjct: 180 NGVESLIRVGRGDMRRILNCLQVVS-LSHKNMVIDENVILSTLDIPLPSEIKFILEHLTK 238
Query: 375 V---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 431
+S++++ K ED + YS + ++ V++ D L+L+ E R
Sbjct: 239 STIKESYEIITKLQED---KGYSIKDIMICLYEAVLTY-DYPDSAICLLLKNFGEIEERC 294
Query: 432 QDGASEYIQILDLGSIVIK 450
GA+E I + L S I+
Sbjct: 295 ASGATEQITLSSLISAFIE 313
>gi|328859221|gb|EGG08331.1| hypothetical protein MELLADRAFT_47841 [Melampsora larici-populina
98AG31]
Length = 346
Score = 214 bits (544), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 114/271 (42%), Positives = 170/271 (62%), Gaps = 16/271 (5%)
Query: 23 STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
S + K++ +PWVEKYRP T+++V+ ++++ ++K ++ LPH LFYGPPGTGKTST
Sbjct: 15 SETEKSQKDNLPWVEKYRPSTLEEVVSHKDIIYTIQKFITSNRLPHLLFYGPPGTGKTST 74
Query: 83 MIAACHQLFGD--MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
++A QL+ ++ +LELNASDDRGI+V+R+++K FA +A G FK+
Sbjct: 75 ILAIARQLYQTPMSFKNNVLELNASDDRGIEVVREQIKNFA--SARMVFSSG-----FKL 127
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
+ILDEAD MT AQ+ALRR +E+ TK+ RFC+ICNYV+ I + SRC+KFRF PL
Sbjct: 128 IILDEADQMTTTAQSALRRVIEQYTKNVRFCIICNYVNRISPAIQSRCTKFRFGPLDLPE 187
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEV 259
+ R+ + + E+++ + L+ GDMRR + +Q+C G G V+ED V E
Sbjct: 188 VDRRVGQVIDSENLVVTEDGRKALLNLCKGDMRRVLNVMQAC---HSGYGKVDEDSVYEC 244
Query: 260 TGVIPKPWIEKLLKV---DSFQVLEKYIEDL 287
TG IE ++K + FQ K I+D+
Sbjct: 245 TGSPHPKQIEDIVKSMMNEEFQTSFKRIQDI 275
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 21/133 (15%)
Query: 323 ETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNP-WIEKLLKV---DS 377
+ L+ GDMRR + +Q+C G G V+ED V E TG P+P IE ++K +
Sbjct: 209 KALLNLCKGDMRRVLNVMQAC---HSGYGKVDEDSVYECTGS-PHPKQIEDIVKSMMNEE 264
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMS------ASSLSDKQKALILEKLAECNARL 431
FQ K I+D+ + A Q DI++ L + + +L++L++ RL
Sbjct: 265 FQTSFKRIQDIKVNFGLALQ------DIILGIYEFLKTVELGNLAQIYLLDQLSQIEYRL 318
Query: 432 QDGASEYIQILDL 444
G SE +Q+ L
Sbjct: 319 STGGSEKLQLSGL 331
>gi|170589810|ref|XP_001899666.1| Putative activator 1 36 kDa subunit [Brugia malayi]
gi|158592792|gb|EDP31388.1| Putative activator 1 36 kDa subunit, putative [Brugia malayi]
Length = 347
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 112/279 (40%), Positives = 171/279 (61%), Gaps = 11/279 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF- 91
+PWVEKYRP ++ +++ QE+ L K ++ LPH LFYGPPGTGKTST++AA L+
Sbjct: 15 MPWVEKYRPASLTELVSHQEITDTLMKLINENRLPHLLFYGPPGTGKTSTILAAARMLYT 74
Query: 92 GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
+LELNASDDRGI ++R+++ FAQ + +++ P K++ILDEAD+MT
Sbjct: 75 SKQLSSMVLELNASDDRGIGIVREQIINFAQTSTLNVDKNQSSVP--KLIILDEADAMTK 132
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ+ALRR +EK T + RFC+ICNY+S II + SRC++ RF PL+ +L RL +I +
Sbjct: 133 DAQSALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLSNEQILPRLHHIVQV 192
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW-IEK 270
E++ + L+ + GDMRR I LQS A + + +V G P P +EK
Sbjct: 193 ETLTVTEDGQKALLNLAEGDMRRVINILQSTA--MAFKTVDEPNVYRCVGY-PLPTDVEK 249
Query: 271 LLKV---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIV 305
++K+ DS + IE++ E A++ + + + H+ +
Sbjct: 250 IVKILLNDSIEDAYTKIEEIRTERAFALSDILNSMHEFI 288
>gi|225459599|ref|XP_002285868.1| PREDICTED: replication factor C subunit 5 [Vitis vinifera]
gi|302141794|emb|CBI18997.3| unnamed protein product [Vitis vinifera]
Length = 360
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 109/241 (45%), Positives = 145/241 (60%), Gaps = 6/241 (2%)
Query: 21 SVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKT 80
SV G K PWVEKYRP+++ DV +++V + + S LPH L YGPPGTGKT
Sbjct: 25 SVVVGGPPDRKATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKT 84
Query: 81 STMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
ST++A +L+G+ + ILELNASDDRGI V+R +++ FA + F K+
Sbjct: 85 STILAVARKLYGEQFHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKSS----VKL 140
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
V+LDEAD+MT AQ ALRR +EK TK+TRF LICN+V+ II L SRC++FRF PL
Sbjct: 141 VLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDAVH 200
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVT 260
+ RL+++ E + L LV S GDMR+A+ LQS + I E V T
Sbjct: 201 VTERLKHVINAEKLDVSESGLAALVRLSSGDMRKALNILQSTH--MASQQITEEAVYLCT 258
Query: 261 G 261
G
Sbjct: 259 G 259
>gi|345006147|ref|YP_004809000.1| replication factor C small subunit [halophilic archaeon DL31]
gi|344321773|gb|AEN06627.1| Replication factor C small subunit [halophilic archaeon DL31]
Length = 327
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 151/238 (63%), Gaps = 10/238 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T++D+ Q+E + L+ ++G +LPH LF GP G GKTS+ A +++GD
Sbjct: 16 WIEKYRPQTLEDIHGQEETIERLQSYIAGGELPHLLFSGPAGIGKTSSATAIAREIYGDD 75
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD+RGI V+RD++K+FA+ G + ++I+ LDEADS+T AQ
Sbjct: 76 WRGNFLELNASDERGIDVVRDRIKSFARSAFGGHD--------YRIIFLDEADSLTSDAQ 127
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL++ + +L I E E++
Sbjct: 128 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAIANQLGEIAEIEAI 187
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
+ + LV + GDMRR I LQ+ A G+ + E V VT IE+++
Sbjct: 188 EVTDEGFDALVYAANGDMRRGINSLQAAATT--GDVVDAEAVYAVTATARPEDIEEMV 243
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDS 377
+ + LV + GDMRR I LQ+ A G+ + E V VT IE+++ VD
Sbjct: 192 EGFDALVYAANGDMRRGINSLQAAATT--GDVVDAEAVYAVTATARPEDIEEMVAAAVDG 249
Query: 378 -FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
F ++ L+ + + + DQ H LSD+ ++E+L E + R+ +GA
Sbjct: 250 DFPKARATLDTLLTDVGMAGGDIIDQLHRSAWE-FELSDRAVVRLMERLGEADYRIAEGA 308
Query: 436 SEYIQ 440
+E +Q
Sbjct: 309 NEQVQ 313
>gi|194306567|ref|NP_853556.2| replication factor C subunit 5 isoform 2 [Homo sapiens]
gi|193787684|dbj|BAG52890.1| unnamed protein product [Homo sapiens]
Length = 319
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 112/227 (49%), Positives = 150/227 (66%), Gaps = 10/227 (4%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM- 94
VEKYRP+T++D+I Q+++S ++K ++ LPH L YGPPGTGKTST++A QL+ D
Sbjct: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 61
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+ +LELNASDDRGI +IR + +FA T + F + FK+VILDEAD+MT AQ
Sbjct: 62 FGSMVLELNASDDRGIDIIRGPILSFAS-TRTIFKKG------FKLVILDEADAMTQDAQ 114
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+++ E+E V
Sbjct: 115 NALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKV 174
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 175 DISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG 219
>gi|409728331|ref|ZP_11271198.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
gi|448722058|ref|ZP_21704598.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
gi|445790282|gb|EMA40949.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
Length = 323
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 114/309 (36%), Positives = 175/309 (56%), Gaps = 17/309 (5%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
+ + R + W+EKYRP+ + V ++V L+ ++ DLPH LF GP G GKT++
Sbjct: 2 SEAEARGRGEIWIEKYRPQRLSAVAGHADIVGRLESYVAQDDLPHLLFTGPAGVGKTTSA 61
Query: 84 IAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
+A +++GD +RE LELNASD+RGI V+RD++K FA+ + G++ ++I+ L
Sbjct: 62 MAIAREVYGDDWRENFLELNASDERGIDVVRDRIKNFARASFGGYD--------YRIIFL 113
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD++T AQ+ALRRTME+ +TRF L CNY + II P+ SRC+ FRF PL +++
Sbjct: 114 DEADALTSDAQSALRRTMEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLDGDSVAE 173
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
++ I E+E + ++ LV + GDMR+AI LQ+ A GE + E V +T +
Sbjct: 174 YVRRIAEEEGIEITEDGIDALVYAADGDMRKAINGLQAAATT--GETVDEEAVYAITAAV 231
Query: 264 PKPWIEKLLKV---DSFQVLEKYIEDLILEA-YSATQLFDQFHDIVMLASSLSDKQKALF 319
IE ++ F ++DL+ EA + DQ H A S +A
Sbjct: 232 RPEQIETMVTTALDGDFTAARAKLDDLLTEAGLGGGDVIDQLH---RSAWSFDLDDRATV 288
Query: 320 KALETLVET 328
+ LE + ET
Sbjct: 289 RLLERVGET 297
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
++ LV + GDMR+AI LQ+ A GE + E V +T + IE ++
Sbjct: 190 GIDALVYAADGDMRKAINGLQAAATT--GETVDEEAVYAITAAVRPEQIETMVTTALDGD 247
Query: 378 FQVLEKYIEDLILEA-YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F ++DL+ EA + DQ H S L D+ +LE++ E + R+ GA+
Sbjct: 248 FTAARAKLDDLLTEAGLGGGDVIDQLHRSAWS-FDLDDRATVRLLERVGETDYRISQGAN 306
Query: 437 EYIQ 440
E +Q
Sbjct: 307 ERLQ 310
>gi|225679164|gb|EEH17448.1| replication factor C subunit 3 [Paracoccidioides brasiliensis Pb03]
Length = 391
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 100/215 (46%), Positives = 140/215 (65%), Gaps = 5/215 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DDV +++ + + + LPH L YGPPGTGKTST++A +++G
Sbjct: 45 LPWVEKYRPNSLDDVSGHHDIIGTINRFIDSNRLPHLLLYGPPGTGKTSTILALARRIYG 104
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQ----TASGFNQDGKPCPPFKIVILDEAD 147
R+ +LELNASDDRGI V+RD++KTFA + + + FK++ILDEAD
Sbjct: 105 VKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSMAPVAKSESSLGAFKLIILDEAD 164
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR MEK T + RFC+I NY + L SRC++FRF PL E + +
Sbjct: 165 AMTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRALVNQ 224
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E V +A+++LVE S GDMRRA+ LQ+C
Sbjct: 225 VIEKEQVRIQPEAIDSLVELSKGDMRRALNVLQAC 259
>gi|162312520|ref|XP_001713099.1| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces
pombe 972h-]
gi|13431787|sp|O14003.2|RFC3_SCHPO RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3
gi|4468733|emb|CAB38106.1| replication factor C subunit [Schizosaccharomyces pombe]
gi|5688939|dbj|BAA82745.1| Rfc3 [Schizosaccharomyces pombe]
gi|5688941|dbj|BAA82746.1| Rfc3 [Schizosaccharomyces pombe]
gi|159884003|emb|CAB39134.2| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces
pombe]
Length = 342
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 143/210 (68%), Gaps = 7/210 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DV+ ++++S L+K +S +PH LFYGPPGTGKTST++A +++G
Sbjct: 23 LPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYG 82
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR +++ELNASDDRGI +R+++K FA T F FK++ILDEAD+MT A
Sbjct: 83 PNYRNQLMELNASDDRGIDAVREQIKNFA-STRQIF------ASTFKMIILDEADAMTLA 135
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK TK+ RFC+ICNY++ I + SRC++FRF+PL + + ++ + E
Sbjct: 136 AQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSE 195
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSC 242
D A ++ S GDMR+A+ LQ+C
Sbjct: 196 HCNIDPDAKMAVLRLSKGDMRKALNILQAC 225
>gi|302501939|ref|XP_003012961.1| hypothetical protein ARB_00844 [Arthroderma benhamiae CBS 112371]
gi|291176522|gb|EFE32321.1| hypothetical protein ARB_00844 [Arthroderma benhamiae CBS 112371]
Length = 417
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 114/267 (42%), Positives = 155/267 (58%), Gaps = 37/267 (13%)
Query: 13 DAPSSSKTSVSTSGKTRNK--------PV------PWVEKYRPKTIDDVIEQQEVVSVLK 58
DAP + T+ T+ T K PV PWVEKYRP T+DDV Q++++ +
Sbjct: 11 DAPPARDTAAFTADPTDVKGKRIVADLPVEAGDNLPWVEKYRPDTLDDVSGHQDIIATIN 70
Query: 59 KCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKV 117
+ + LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++
Sbjct: 71 RFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRGIDVVREQI 130
Query: 118 KTFA----------------------QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
KTFA +Q S G FK++ILDEAD+MT AAQ
Sbjct: 131 KTFASTSLVYKGRSEAESLTAIIVGTKQIFSTAPSSGSGLGAFKLIILDEADAMTSAAQM 190
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + + + E+E V
Sbjct: 191 ALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRRLVDTVIEKEEVQ 250
Query: 216 CDFKALETLVETSGGDMRRAITCLQSC 242
A+++LV+ S GDMRRA+ LQ+C
Sbjct: 251 IQPDAIDSLVKLSKGDMRRALNVLQAC 277
>gi|371944797|gb|AEX62619.1| putative replication factor C small subunit [Moumouvirus Monve]
Length = 369
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 98/216 (45%), Positives = 140/216 (64%), Gaps = 1/216 (0%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPW+EKYRP+ + D+ + + ++ + K S ++ HFLFYGPPGTGKTS ++A ++F
Sbjct: 8 VPWIEKYRPRRLQDIAQSENLIKLFKNSTSKGEMTHFLFYGPPGTGKTSAILAMGREIFK 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQ-TASGFNQDGKPCPPFKIVILDEADSMTH 151
+ + R++E NASDDRGI +R+K+ A++ S N DG P +KI+ILDEADSMT
Sbjct: 68 EHFPTRVIEFNASDDRGINAVREKITNEAKKYVTSIINPDGTTIPSYKIIILDEADSMTD 127
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALR +E+ + +TRFC ICNY++ I + SRCS FK L + M+ +L I +
Sbjct: 128 EAQDALRVIIEQYSTTTRFCFICNYITKITDAIKSRCSAIYFKKLDDECMVNKLNEISIK 187
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG 247
ES+ LET++E S GDMR+AI LQ+ L G
Sbjct: 188 ESMKLSKDILETIIEVSNGDMRKAIMLLQNLKYLYG 223
>gi|340377781|ref|XP_003387407.1| PREDICTED: replication factor C subunit 5-like [Amphimedon
queenslandica]
Length = 332
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 117/278 (42%), Positives = 168/278 (60%), Gaps = 14/278 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD+I +E+++ ++ L LPH LFYGPPGTGKTST++A +F
Sbjct: 5 LPWVEKYRPKNLDDLISHKEIINTIQHFLKEDRLPHLLFYGPPGTGKTSTILACAKTIFS 64
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
+ +LELNASDDRGI V+R +++FA T S F FK++ILDEAD+MT
Sbjct: 65 PAEIKSMVLELNASDDRGIDVVRGPIQSFAS-TRSIFRSG------FKLIILDEADAMTK 117
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +E T + RFCLICNY+S II L SRC++FRF PL+ M RLQ+I +
Sbjct: 118 DAQNALRRVIETYTDNVRFCLICNYLSKIIPALQSRCTRFRFGPLSMEQMSVRLQHIIRE 177
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG-VIP---KPW 267
E++ ++++V+ + GDMRR++ LQS + + + V TG +P K
Sbjct: 178 ENINITDSGMDSVVKLAQGDMRRSLNILQSTS--MAYDTVDQRTVYLCTGQPLPEDIKQI 235
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305
+E +L D +K IE I + + + + H +V
Sbjct: 236 VEWMLGEDFMTAYQKIIELKIEKGLALHDIITEIHHLV 273
>gi|291407082|ref|XP_002719834.1| PREDICTED: replication factor C 5 [Oryctolagus cuniculus]
Length = 342
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/253 (45%), Positives = 159/253 (62%), Gaps = 10/253 (3%)
Query: 21 SVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKT 80
SV T + + VEKYRP+T++D+I ++++S ++K +S LPH L YGPPGTGKT
Sbjct: 10 SVPTQVDIGGRQLDRVEKYRPQTLNDLISHRDILSTIQKFISEDRLPHLLLYGPPGTGKT 69
Query: 81 STMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFK 139
ST++A QL+ D + +LELNASDDRGI ++R + +FA T + F + FK
Sbjct: 70 STILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FK 122
Query: 140 IVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAEN 199
+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL
Sbjct: 123 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE 182
Query: 200 TMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 259
M+ RL+++ E+E V ++ L+ S GDMRRA+ LQS G + E V
Sbjct: 183 LMVPRLEHVVEEEKVYVSEDGMKALITLSSGDMRRALNILQSTNMAFG--KVTEETVYTC 240
Query: 260 TGVIPKPWIEKLL 272
TG K I +L
Sbjct: 241 TGHPLKSDIANIL 253
>gi|302653321|ref|XP_003018488.1| hypothetical protein TRV_07502 [Trichophyton verrucosum HKI 0517]
gi|291182138|gb|EFE37843.1| hypothetical protein TRV_07502 [Trichophyton verrucosum HKI 0517]
Length = 416
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 114/266 (42%), Positives = 154/266 (57%), Gaps = 36/266 (13%)
Query: 13 DAPSSSKTSVSTSGKTRNK--------PV------PWVEKYRPKTIDDVIEQQEVVSVLK 58
DAP + T+ T+ T K PV PWVEKYRP T+DDV Q++++ +
Sbjct: 11 DAPPARDTAAFTADPTDVKGKRIVADLPVEAGDNLPWVEKYRPDTLDDVSGHQDIIATIN 70
Query: 59 KCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKV 117
+ + LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++
Sbjct: 71 RFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRGIDVVREQI 130
Query: 118 KTFA---------------------QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAA 156
KTFA +Q S G FK++ILDEAD+MT AAQ A
Sbjct: 131 KTFASTSLVYKGRSEAESLTAIVGTKQIFSTAPSSGSGLGAFKLIILDEADAMTSAAQMA 190
Query: 157 LRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMC 216
LRR MEK T +TRFC+I NY + L SRC++FRF PL E + + + E E V
Sbjct: 191 LRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRRLVDTVIETEEVQI 250
Query: 217 DFKALETLVETSGGDMRRAITCLQSC 242
A+++LV+ S GDMRRA+ LQ+C
Sbjct: 251 QPDAIDSLVKLSKGDMRRALNVLQAC 276
>gi|226290876|gb|EEH46304.1| replication factor C subunit 3 [Paracoccidioides brasiliensis Pb18]
Length = 395
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 100/215 (46%), Positives = 140/215 (65%), Gaps = 5/215 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DDV +++ + + + LPH L YGPPGTGKTST++A +++G
Sbjct: 45 LPWVEKYRPNSLDDVSGHHDIIGTINRFIDSNRLPHLLLYGPPGTGKTSTILALARRIYG 104
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQ----TASGFNQDGKPCPPFKIVILDEAD 147
R+ +LELNASDDRGI V+RD++KTFA + + + FK++ILDEAD
Sbjct: 105 VKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSMAPVAKSESSLGAFKLIILDEAD 164
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR MEK T + RFC+I NY + L SRC++FRF PL E + +
Sbjct: 165 AMTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRALVNQ 224
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E V +A+++LVE S GDMRRA+ LQ+C
Sbjct: 225 VIEKEQVRIQPEAIDSLVELSKGDMRRALNVLQAC 259
>gi|357463515|ref|XP_003602039.1| Replication factor C subunit [Medicago truncatula]
gi|355491087|gb|AES72290.1| Replication factor C subunit [Medicago truncatula]
Length = 355
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/251 (44%), Positives = 152/251 (60%), Gaps = 9/251 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+++DDV +++V + + + LPH L YGPPGTGKTST++A +L+G
Sbjct: 34 WVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 93
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
Y ILELNASDDRGI V+R +++ FA + F P K+V+LDEAD+MT AQ
Sbjct: 94 YHNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVK----PSVKLVLLDEADAMTKDAQ 149
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR +EK TKSTRF LICN+V+ II L SRC++FRF PL + RL+++ E +
Sbjct: 150 FALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAERL 209
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
L LV S GDMR+A+ LQS + I E V TG P + + ++
Sbjct: 210 DVQDSGLSALVRLSNGDMRKALNILQSTH--MASQQITEEAVYLCTG---NPLPKDIEQI 264
Query: 275 DSFQVLEKYIE 285
+ + E+Y E
Sbjct: 265 SYWLLNEQYSE 275
>gi|451927308|gb|AGF85186.1| replication factor C small subunit [Moumouvirus goulette]
Length = 369
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 142/214 (66%), Gaps = 1/214 (0%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PW+EKYRP+ + D+ + + ++ + K +S ++ HFLFYGPPGTGKTS ++A ++F
Sbjct: 8 IPWIEKYRPRRLQDIAQSENLIKLFKNSISKGEMTHFLFYGPPGTGKTSAILAMGREIFK 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF-NQDGKPCPPFKIVILDEADSMTH 151
+ + R++E NASDDRGI +R+K+ A++ + N DG P +KI+ILDEADSMT
Sbjct: 68 EHFPTRVIEFNASDDRGINAVREKITNEAKKYVTSISNPDGTIIPSYKIIILDEADSMTD 127
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALR +E+ + +TRFC ICNY++ I + SRCS FK L ++ M+ +L I +
Sbjct: 128 EAQDALRVIIEQYSTTTRFCFICNYITKITDAIKSRCSAIYFKKLDDDCMVNKLNEISIK 187
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245
ES+ + LET++E S GDMR+AI LQ+ L
Sbjct: 188 ESMKLSKEILETIIEVSNGDMRKAIMLLQNLKYL 221
>gi|383849950|ref|XP_003700596.1| PREDICTED: replication factor C subunit 5-like [Megachile
rotundata]
Length = 329
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/226 (46%), Positives = 150/226 (66%), Gaps = 15/226 (6%)
Query: 17 SSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPG 76
S+K +ST+ +PWVEKYRPK +DD+I ++++ + K ++ LPH LFYGPPG
Sbjct: 2 SAKPMISTN-------LPWVEKYRPKKLDDLISHEDIIKTINKFINEDQLPHLLFYGPPG 54
Query: 77 TGKTSTMIAACHQLF-GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
TGKTST++A +L+ + +LE+NASDDRGI ++R ++ FA + + G
Sbjct: 55 TGKTSTILACARKLYTAGQFNSMVLEMNASDDRGIGIVRGQILNFA--STGTLYKSG--- 109
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
FK++ILDEAD+MT+ AQ ALRR +EK T + RFC+ICNY+S II L SRC+KFRF P
Sbjct: 110 --FKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGP 167
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
L+ + +L RL+ I ++E++ E L+ SGGDMR+ + LQS
Sbjct: 168 LSSDQILPRLETIIKEENLNVSEDGKEALIALSGGDMRKVLNVLQS 213
>gi|291238303|ref|XP_002739068.1| PREDICTED: replication factor C 5-like [Saccoglossus kowalevskii]
Length = 331
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/255 (43%), Positives = 160/255 (62%), Gaps = 13/255 (5%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N+ +PWVEKYRP ++++I +++S + + + LPH LFYGPPGTGKTST++A Q
Sbjct: 7 NRNLPWVEKYRPNKLEELISHADILSTIDRFIKEDRLPHLLFYGPPGTGKTSTILAVAKQ 66
Query: 90 LFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADS 148
L+ + +LELNASDDRGI ++R V +FA T + F FKIVILDEAD+
Sbjct: 67 LYSPKEFNSMVLELNASDDRGIGIVRGPVLSFAS-TRTIFKSG------FKIVILDEADA 119
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT+ AQ ALRR +EK T++TRFCLICNY+S II + SRC++FRF PL M+ RL+++
Sbjct: 120 MTNDAQNALRRVIEKFTENTRFCLICNYLSKIIPAIQSRCTRFRFGPLDNQQMVPRLEHV 179
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWI 268
+QE V + LV + GDMR+++ LQS + +VNE + V + P
Sbjct: 180 IQQERVDVTEDGMNALVTLANGDMRKSLNILQSTSM---AYDVVNE--VNVYTCVGHPLK 234
Query: 269 EKLLKVDSFQVLEKY 283
E + + ++ + E +
Sbjct: 235 EDISNIVNWMLNEDF 249
>gi|41614964|ref|NP_963462.1| replication factor C small subunit [Nanoarchaeum equitans Kin4-M]
gi|42559422|sp|P60374.1|RFCS_NANEQ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|40068688|gb|AAR39023.1| NEQ170 [Nanoarchaeum equitans Kin4-M]
Length = 322
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 116/261 (44%), Positives = 157/261 (60%), Gaps = 19/261 (7%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPK IDD+I Q+E+ LK + ++PH LF GPPGTGKT+ +A H+L+GD
Sbjct: 4 WTEKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYGDA 63
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR KVK FA+ G PFKIV LDEAD++T AQ
Sbjct: 64 WRENFLELNASDERGIDVIRHKVKEFARAKPIG-------DVPFKIVFLDEADALTRDAQ 116
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR MEK ++STRF L CNY S II+P+ SR + F+FKPL + + I + E +
Sbjct: 117 QALRRIMEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEAFRELINRIVKGEGL 176
Query: 215 MCDF--KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
+ + + + L + + GD+R+AI LQ+ A + + D L I KP
Sbjct: 177 ILENEDEIINALYDIAEGDLRKAINILQAAAMM---SKTITVDRLYEIASIAKP-----K 228
Query: 273 KVDSFQVLEKYIEDLILEAYS 293
++D +VL K ++ LEA S
Sbjct: 229 EID--EVLNKAMQGNFLEARS 247
>gi|254564511|ref|XP_002489366.1| replication factor C subunit [Komagataella pastoris GS115]
gi|238029162|emb|CAY67082.1| Subunit of heteropentameric Replication factor C (RF-C)
[Komagataella pastoris GS115]
gi|328349795|emb|CCA36195.1| replication factor C subunit 2/4 [Komagataella pastoris CBS 7435]
Length = 324
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 123/302 (40%), Positives = 173/302 (57%), Gaps = 25/302 (8%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK + D++ ++ + LK ++PH + G PG GKT+++ H+L G
Sbjct: 9 LPWVEKYRPKLLKDIVGNEDTIERLKAFAIDGNVPHMIISGLPGIGKTTSVHCLAHELLG 68
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
DMY + +LELNASDDRGI+V+R+K+K FA + S PP KIVILDEADSMT
Sbjct: 69 DMYYDAVLELNASDDRGIEVVRNKIKQFAHKKVS--------LPPGRHKIVILDEADSMT 120
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME + +TRF CN + II+PL SRCS R+ L + +L+RL YIC+
Sbjct: 121 PGAQQALRRTMEIYSGTTRFVFACNMSNKIIEPLQSRCSILRYSKLYDEQVLSRLLYICK 180
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEK 270
+E V LE L+ T+ GDMR+AI LQS G G+VN D + P P + +
Sbjct: 181 EEGVKYTDDGLEALIFTAEGDMRQAINNLQSTV---AGMGLVNGDNVFRIVDSPHPLVVR 237
Query: 271 LLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVETSG 330
Q+L K ++D ++A A L ++ + S D FK ++++ E
Sbjct: 238 -------QMLFKAVKDSDIDA--AVDLLNRLWE---KGYSAVDIVSTSFKVMKSVTEIPE 285
Query: 331 GD 332
D
Sbjct: 286 AD 287
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 22/133 (16%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQV 380
LE L+ T+ GDMR+AI LQS G G+VN D + P+P + + Q+
Sbjct: 190 GLEALIFTAEGDMRQAINNLQSTV---AGMGLVNGDNVFRIVDSPHPLVVR-------QM 239
Query: 381 LEKYIEDLILEA------------YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 428
L K ++D ++A YSA + ++ S + + + + ++ ++ +
Sbjct: 240 LFKAVKDSDIDAAVDLLNRLWEKGYSAVDIVSTSFKVMKSVTEIPEADRLEVMREIGFTH 299
Query: 429 ARLQDGASEYIQI 441
R+ +G S Y+Q+
Sbjct: 300 MRVLEGVSSYLQL 312
>gi|171677049|ref|XP_001903476.1| hypothetical protein [Podospora anserina S mat+]
gi|170936592|emb|CAP61251.1| unnamed protein product [Podospora anserina S mat+]
Length = 389
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/243 (44%), Positives = 151/243 (62%), Gaps = 10/243 (4%)
Query: 10 LGKDAPSSSKTSVSTSGKTRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCLSG 63
+ KD SS + N PV PWVEKYRP ++DDV Q++++ + K +
Sbjct: 14 VSKDVTFSSSNAAKGKRSAANLPVEAEDSLPWVEKYRPVSLDDVSGHQDILATINKFVDS 73
Query: 64 ADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFA- 121
LPH L YGPPGTGKTST++A +++G + R+ +LELNASDDRGI V+R+++KTFA
Sbjct: 74 NRLPHLLLYGPPGTGKTSTILALARRIYGAENMRQMVLELNASDDRGIDVVREQIKTFAS 133
Query: 122 --QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
Q + G + FK++ILDEAD+MT AQ ALRR MEK T +TRFC+I NY
Sbjct: 134 TKQIFSLGASTSKTGLAGFKLIILDEADAMTSTAQMALRRIMEKYTVNTRFCIIANYSHK 193
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
+ L SRC++FRF PL E + + + ++E + +A + LV+ S GDMRRA+ L
Sbjct: 194 LSPALLSRCTRFRFSPLKERDIRVLVDKVIDEEHIKIKPEAADALVKLSKGDMRRALNVL 253
Query: 240 QSC 242
Q+C
Sbjct: 254 QAC 256
>gi|386002033|ref|YP_005920332.1| replication factor C small subunit [Methanosaeta harundinacea 6Ac]
gi|357210089|gb|AET64709.1| Replication factor C small subunit [Methanosaeta harundinacea 6Ac]
Length = 368
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/327 (36%), Positives = 184/327 (56%), Gaps = 19/327 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP ++DDV+ Q+E+V LK + ++PH LF GPPG GKT+ I+ +LFG+
Sbjct: 51 WIEKYRPMSLDDVVGQEEIVKRLKSYVRSRNVPHLLFSGPPGVGKTAAAISMVRELFGEE 110
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R +ELNASD+RGI V+R KVK FA+ G + FK++ LDEAD++T+ AQ
Sbjct: 111 WRGNFIELNASDERGIDVVRHKVKDFARIAPLGNAE-------FKVIFLDEADALTNDAQ 163
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + RF L CNY S II+P+ SRC+ +RF+ L+E + R++ I E E V
Sbjct: 164 SALRRTMERYSSICRFVLSCNYSSKIIEPIQSRCAVYRFRSLSEEAVSERMKTIAEAEGV 223
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK- 273
+ + +V + GDMR+AI LQ+ + ++ E + E + ++T I L+K
Sbjct: 224 KVTPEGMRAIVYVARGDMRKAINALQAASLME--ESVTEETIYQITATARPEQIRDLMKT 281
Query: 274 --VDSFQVLEKYIEDLIL-EAYSATQLFDQFH-DIVMLASSLSDKQKALFKALETLVE-- 327
+F ++DL+L + S + Q H + L S L + ++ + E
Sbjct: 282 ALAGNFTQARSLLDDLLLVQGLSGEDVIIQIHRQTLSLLDSHELSGPTLVRLMDRIGEID 341
Query: 328 ---TSGGDMRRAITCLQSCARLKGGEG 351
T G + R + L + L G EG
Sbjct: 342 FRMTEGANERIQLEALLAYFALAGTEG 368
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VD 376
+ + +V + GDMR+AI LQ+ + ++ E + E + ++T I L+K
Sbjct: 228 EGMRAIVYVARGDMRKAINALQAASLME--ESVTEETIYQITATARPEQIRDLMKTALAG 285
Query: 377 SFQVLEKYIEDLIL-EAYSATQLFDQFHDIVMS---ASSLSDKQKALILEKLAECNARLQ 432
+F ++DL+L + S + Q H +S + LS +++++ E + R+
Sbjct: 286 NFTQARSLLDDLLLVQGLSGEDVIIQIHRQTLSLLDSHELSGPTLVRLMDRIGEIDFRMT 345
Query: 433 DGASEYIQI 441
+GA+E IQ+
Sbjct: 346 EGANERIQL 354
>gi|391342410|ref|XP_003745513.1| PREDICTED: replication factor C subunit 5-like [Metaseiulus
occidentalis]
Length = 327
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 157/242 (64%), Gaps = 9/242 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF- 91
+PWVEKYRPKT+DD+I ++++S + + ++ PH LFYGPPGTGKTST++A QL+
Sbjct: 8 LPWVEKYRPKTLDDLIAHEDIISTIDRFVTQDRFPHLLFYGPPGTGKTSTILATARQLYE 67
Query: 92 GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
+ +LELNASDDRGI ++R ++ FA T + FN+ FK++ILDEAD+MTH
Sbjct: 68 PKEFSSMVLELNASDDRGIGIVRGEILNFAS-TRTIFNKK------FKLIILDEADAMTH 120
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK + RFC+ICNY+S II PL SRC++FRF PL+ + M+ R++ + +
Sbjct: 121 DAQNALRRVIEKYADNARFCIICNYLSKIIPPLQSRCTRFRFGPLSVSQMVPRIEMVIKT 180
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE-DVLEVTGVIPKPWIEK 270
E V + +V+ + GDMR+++ LQ+ G ++E +V + G K I
Sbjct: 181 EDVPITPAGKQAIVDLAEGDMRKSLNILQASYMAFCERGKIDETEVYQCVGAPQKSVIAD 240
Query: 271 LL 272
++
Sbjct: 241 IM 242
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 6/136 (4%)
Query: 323 ETLVETSGGDMRRAITCLQS-----CARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDS 377
+ +V+ + GDMR+++ LQ+ C R K E V + V + + L+ D
Sbjct: 191 QAIVDLAEGDMRKSLNILQASYMAFCERGKIDETEVYQCVGAPQKSVIADIMTHLMNDDI 250
Query: 378 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
K ++ +++ + + + H +M L K K IL KL + RL G+SE
Sbjct: 251 TTAYRKILDIKTMKSLALQDIVHKVHQSIMEFD-LKAKVKIFILSKLGQLEKRLAAGSSE 309
Query: 438 YIQILDLGSIVIKANK 453
IQ+ L SI+ +A +
Sbjct: 310 NIQLGSLVSIMFQARQ 325
>gi|159041490|ref|YP_001540742.1| replication factor C [Caldivirga maquilingensis IC-167]
gi|157920325|gb|ABW01752.1| Replication factor C [Caldivirga maquilingensis IC-167]
Length = 348
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 139/210 (66%), Gaps = 7/210 (3%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K + WVE++RP + D+++Q+ V L + + DLPH LFYGPPG GKT+ +A +L
Sbjct: 5 KELLWVERFRPVRLVDLVDQEGVKVGLMEFVRRGDLPHLLFYGPPGVGKTTAALALAREL 64
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+GD +R +LELNASD+RGI VIR+KVK FA+ +G P P FK+VILDEAD+MT
Sbjct: 65 YGDSWRSSVLELNASDERGIDVIREKVKEFARTIPTG------PVP-FKLVILDEADNMT 117
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRR ME +TRF L+ NY+S II+P+ SRC+ FRF PL + ++ RL+ I +
Sbjct: 118 SDAQQALRRIMEMYASTTRFILLANYISGIIEPIQSRCAIFRFNPLPKEAVIERLRQIAK 177
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQ 240
+ V LE + E S GDMR+AI LQ
Sbjct: 178 ETGVEVTEDGLEAIWEVSQGDMRKAINTLQ 207
>gi|320594193|gb|EFX06596.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
Length = 386
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 150/237 (63%), Gaps = 14/237 (5%)
Query: 16 SSSKTSVSTSGKTRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHF 69
+SSK ST+ N PV PWVEKYRP ++DDV Q++++ + K + LPH
Sbjct: 23 ASSKGKRSTAA---NLPVEAEDSLPWVEKYRPVSLDDVSGHQDILATINKFVDSNRLPHL 79
Query: 70 LFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF 128
L YGPPGTGKTST++A +++G + R+ +LELNASDDRGI V+R+++KTFA T F
Sbjct: 80 LLYGPPGTGKTSTILALARRIYGAENTRQMVLELNASDDRGIDVVREQIKTFAS-TRQIF 138
Query: 129 NQDGKPCPP---FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLT 185
P P +K+++LDEAD+MT+ AQ ALRR MEK T +TRFC+I NY + L
Sbjct: 139 AASSGPAPSLARYKLIVLDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALL 198
Query: 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
SRC++FRF PL E + + + E V +A + LV S GDMRRA+ LQ+C
Sbjct: 199 SRCTRFRFSPLKEADIRVLVNKVIADEDVKIMSEAADALVTLSRGDMRRALNVLQAC 255
>gi|325096741|gb|EGC50051.1| activator 1 subunit 3 [Ajellomyces capsulatus H88]
Length = 443
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 101/215 (46%), Positives = 142/215 (66%), Gaps = 5/215 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T++DV +++S + + + LPH L YGPPGTGKTST++A +++G
Sbjct: 45 LPWVEKYRPNTLEDVSGHHDIISTINRFIDKNRLPHLLLYGPPGTGKTSTILALARRIYG 104
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQ----TASGFNQDGKPCPPFKIVILDEAD 147
R+ +LELNASDDRGI V+RD++KTFA + + + FK++ILDEAD
Sbjct: 105 VKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSVAPSTKSESTLGAFKLIILDEAD 164
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + +
Sbjct: 165 AMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEEDIRVLVDQ 224
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E V +A+++LV+ S GDMRRA+ LQ+C
Sbjct: 225 VVEKERVRIQPEAIDSLVQLSKGDMRRALNVLQAC 259
>gi|441432472|ref|YP_007354514.1| putative replication factor C small subunit [Acanthamoeba polyphaga
moumouvirus]
gi|440383552|gb|AGC02078.1| putative replication factor C small subunit [Acanthamoeba polyphaga
moumouvirus]
Length = 369
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 98/216 (45%), Positives = 140/216 (64%), Gaps = 1/216 (0%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPW+EKYRP+ + D+ + + ++ + K S ++ HFLFYGPPGTGKTS ++A ++F
Sbjct: 8 VPWIEKYRPRRLQDIAQSENLIKLFKNSTSKGEMTHFLFYGPPGTGKTSAILAMGREIFK 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQ-TASGFNQDGKPCPPFKIVILDEADSMTH 151
+ + R++E NASDDRGI +R+K+ A++ S N DG P +KI+ILDEADSMT
Sbjct: 68 EHFPTRVIEFNASDDRGINAVREKITNEAKKYVTSIINPDGTIIPSYKIIILDEADSMTD 127
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALR +E+ + +TRFC ICNY++ I + SRCS FK L + M+ +L I +
Sbjct: 128 EAQDALRVIIEQYSTTTRFCFICNYITKITDAIKSRCSAVYFKKLDDECMVNKLNEISIK 187
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG 247
ES+ LET++E S GDMR+AI LQ+ L G
Sbjct: 188 ESMKLSKDILETIIEVSNGDMRKAIMLLQNLKYLYG 223
>gi|15223967|ref|NP_177871.1| replication factor C subunit 3 [Arabidopsis thaliana]
gi|12323400|gb|AAG51681.1|AC010704_25 putative replication factor C; 24844-22715 [Arabidopsis thaliana]
gi|17529332|gb|AAL38893.1| putative replication factor C [Arabidopsis thaliana]
gi|21436375|gb|AAM51357.1| putative replication factor C [Arabidopsis thaliana]
gi|332197861|gb|AEE35982.1| replication factor C subunit 3 [Arabidopsis thaliana]
Length = 369
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 103/213 (48%), Positives = 140/213 (65%), Gaps = 5/213 (2%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
++K PWVEKYRP+++DDV ++++ + + + LPH L YGPPGTGKTST++A
Sbjct: 35 QSKATPWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVAR 94
Query: 89 QLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADS 148
+L+G YR ILELNASDDRGI V+R +++ FA + + K+V+LDEAD+
Sbjct: 95 KLYGPKYRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSS-----VKLVLLDEADA 149
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR +EK TKSTRF LI N+V+ II L SRC++FRF PL M RL+++
Sbjct: 150 MTKDAQFALRRVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHV 209
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
E E ++ L LV S GDMR+A+ LQS
Sbjct: 210 IEAERLVVSDCGLAALVRLSNGDMRKALNILQS 242
>gi|380015701|ref|XP_003691836.1| PREDICTED: replication factor C subunit 5-like [Apis florea]
Length = 330
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 153/239 (64%), Gaps = 10/239 (4%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
TS T++ +PWVEKYRPK +DD+I +E++ + K + LPH LFYGPPGTGKTST+
Sbjct: 3 TSKPTQSTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENLLPHLLFYGPPGTGKTSTI 62
Query: 84 IAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
+A +L+ + +LE+NASDDRGI ++R ++ +FA T + + FK++I
Sbjct: 63 LACARKLYTPAQFNSMVLEMNASDDRGINIVRGQILSFAS-TGTMYRSG------FKLII 115
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT+ AQ ALRR +EK T + RFC+ICNY+S II L SRC+KFRF PL+ + +L
Sbjct: 116 LDEADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSIDQIL 175
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
RL I ++E++ + L+ SGGDMR+ + LQS G + E+V G
Sbjct: 176 PRLDTIIKEENLNVTEDGKQALITLSGGDMRKVLNVLQSTWLAFG--AVTEENVYSCVG 232
Score = 38.5 bits (88), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Query: 323 ETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW----IEKLLKVDSF 378
+ L+ SGGDMR+ + LQS G + E+V G P P I L +S+
Sbjct: 195 QALITLSGGDMRKVLNVLQSTWLAFG--AVTEENVYSCVGH-PLPIDIKNIVNWLFNESY 251
Query: 379 QVLEKYIEDLILEAYSATQ-LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
++ I+D+ L+ A Q + + H ++ D ++ KLAE R+ G SE
Sbjct: 252 ELCYCKIQDIKLKKGLALQDILTELHLFIIKVFEFPDSILIDLIIKLAEIEKRVSIGCSE 311
Query: 438 YIQI 441
+Q+
Sbjct: 312 AVQL 315
>gi|312069831|ref|XP_003137865.1| replication factor C subunit 3 [Loa loa]
gi|307766973|gb|EFO26207.1| replication factor C subunit 3 [Loa loa]
Length = 354
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 111/278 (39%), Positives = 167/278 (60%), Gaps = 9/278 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++ +V+ E+ L K ++ LPH LFYGPPGTGKTST++AA ++
Sbjct: 15 MPWVEKYRPVSLTEVVSHGEITETLMKLINENRLPHLLFYGPPGTGKTSTILAAAKMMYA 74
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
+LELNASDDRGI ++R+++ FAQ + +++ K P K+++LDEAD+MT
Sbjct: 75 PKQLSSMVLELNASDDRGIGIVREQIINFAQTSTLSMDKNQKSMP--KLIVLDEADAMTK 132
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ+ALRR +EK T + RFC+ICNY+S II + SRC++ RF PL +L RL YI +
Sbjct: 133 DAQSALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLPNEQILPRLHYIVQA 192
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL 271
ES+ L+ + GDMRR I LQS A + + V + G +EK+
Sbjct: 193 ESLTITKDGQNALLNLAEGDMRRIINILQSTA--MAFKTVDEWSVYQCVGYPLPNDVEKI 250
Query: 272 LKV---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIV 305
+++ DS + IE++ E A++ + + + HD +
Sbjct: 251 VRILLNDSIEDAYTKIEEIRSERAFALSDILNSMHDFI 288
>gi|399215831|emb|CCF72519.1| unnamed protein product [Babesia microti strain RI]
Length = 347
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 143/237 (60%), Gaps = 8/237 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PW EKYRP +D +I +++++ +K +PH LF+GPPGTGKTST++A L+G
Sbjct: 6 LPWTEKYRPPDLDSIISHKDIINTIKSFTEVGQIPHLLFHGPPGTGKTSTILAISKHLYG 65
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQ----TASGFNQDGKPCPPFKIVILDEADS 148
+ +LELNASDDRGI V+RDK+KTFA+ S N + K++ILDEAD
Sbjct: 66 NYANVYVLELNASDDRGINVVRDKIKTFAEALNRFVPSSDNPANQVKTNLKLIILDEADQ 125
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT+A+Q ALRR ME K+ RFCLICNY+ II P+ SRC+ FRF PL EN + R I
Sbjct: 126 MTNASQGALRRIMEIYAKNVRFCLICNYMHKIISPIQSRCTGFRFSPLDENDLRRRTLEI 185
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK---GGEGIVN-EDVLEVTG 261
E + + L L+E + GDMR+ + Q A K I++ D+L +G
Sbjct: 186 ATNEGITLEENGLSALIEIAQGDMRKVLNTFQIAAMSKLDSQDRNIIDVNDILNASG 242
>gi|67902154|ref|XP_681333.1| hypothetical protein AN8064.2 [Aspergillus nidulans FGSC A4]
gi|40740496|gb|EAA59686.1| hypothetical protein AN8064.2 [Aspergillus nidulans FGSC A4]
gi|259480821|tpe|CBF73811.1| TPA: subunit of heteropentameric Replication factor (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 398
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 103/215 (47%), Positives = 144/215 (66%), Gaps = 5/215 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV +++++ + + + LPH L YGPPGTGKTST++A +++G
Sbjct: 45 LPWVEKYRPNTLDDVSGHKDILATINRFVEANQLPHLLLYGPPGTGKTSTILALARRIYG 104
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPC-PPFKIVILDEAD 147
R+ +LELNASDDRGI V+R+++KTFA Q + + GK FK++ILDEAD
Sbjct: 105 SKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSATGKSSLASFKLIILDEAD 164
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + +
Sbjct: 165 AMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRVLIDQ 224
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E V +A+++LV S GDMRRA+ LQ+C
Sbjct: 225 VIEKEDVRIQPEAVDSLVTLSRGDMRRALNVLQAC 259
>gi|315425403|dbj|BAJ47068.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
gi|315427367|dbj|BAJ48977.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
gi|343484218|dbj|BAJ49872.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
Length = 327
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/299 (39%), Positives = 182/299 (60%), Gaps = 24/299 (8%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K +PWVEKYRP+ +DDV+ Q++VV LK + ++PH LF GPPGTGKT+T A L
Sbjct: 7 KNLPWVEKYRPRRLDDVVNQEQVVEALKNIVVSKNVPHMLFAGPPGTGKTATAHAFAQDL 66
Query: 91 FGDMYRE--RILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADS 148
FG Y E +E+NASD+RGI+ IR++VKT+A+ G F++++LDE+D
Sbjct: 67 FGPRYIEDGHFIEINASDERGIETIRERVKTYARSVPFG-------GIGFRLLLLDESDQ 119
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
+T AAQ A RRTME+ + + RF L NY + II+P+ SRC+ RFKPL+++ + T L+ I
Sbjct: 120 LTDAAQHAFRRTMEQFSTTCRFILAANYSNRIIEPIQSRCAVLRFKPLSKDMVETMLKKI 179
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWI 268
E++ D A++ + E S GDMR+AI LQS A + + I ++ + +V GV+ + I
Sbjct: 180 AASENIKLDDSAIDAIYEFSLGDMRKAINILQSAASI--SKTIDSKTIYDVMGVVSRGEI 237
Query: 269 EKLLKVDSFQVLE-KYIED-------LILEAYSATQLFDQF-HDIVMLASSLSDKQKAL 318
++L++ VL+ K+IE L ++ Y T + +I +L S DK + +
Sbjct: 238 TRMLQL----VLDGKFIEARNLLRELLYVQGYQPTDIVSSIAREIPLLPVSEQDKLRLM 292
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 70/135 (51%), Gaps = 27/135 (20%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQV 380
A++ + E S GDMR+AI LQS A + + I ++ + +V GV+ I ++L++ V
Sbjct: 191 AIDAIYEFSLGDMRKAINILQSAASI--SKTIDSKTIYDVMGVVSRGEITRMLQL----V 244
Query: 381 LE-KYIED-------LILEAYSATQLFDQFHDIVMSASS------LSDKQKALILEKLAE 426
L+ K+IE L ++ Y T DIV S + +S++ K +++ + E
Sbjct: 245 LDGKFIEARNLLRELLYVQGYQPT-------DIVSSIAREIPLLPVSEQDKLRLMDLIGE 297
Query: 427 CNARLQDGASEYIQI 441
+ R+ +G + +Q+
Sbjct: 298 TDYRISEGGTPEVQL 312
>gi|85110311|ref|XP_963397.1| activator 1 subunit 3 [Neurospora crassa OR74A]
gi|28881264|emb|CAD70523.1| related to replication factor C chain Rfc3 [Neurospora crassa]
gi|28925076|gb|EAA34161.1| activator 1 subunit 3 [Neurospora crassa OR74A]
Length = 389
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 134/358 (37%), Positives = 196/358 (54%), Gaps = 53/358 (14%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++ DV QQ++++ + K + LPH LFYGPPGTGKTST++A Q++G
Sbjct: 43 LPWVEKYRPVSLSDVSGQQDILATINKFVDTNRLPHLLFYGPPGTGKTSTVLALARQIYG 102
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPCPPFKIVILDEADS 148
R+ +LELNASDDRGI V+R+++KTFA Q + G + FK++ILDEAD+
Sbjct: 103 AANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGSSSSRSGLAGFKLIILDEADA 162
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + + +
Sbjct: 163 MTSTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEKDIRVLVDKV 222
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWI 268
++E+V A + LV S GDMRRA+ LQ+C T + PK
Sbjct: 223 IDEENVKILPDATDALVRLSKGDMRRALNVLQACH-------------ASSTPLQPK--- 266
Query: 269 EKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVET 328
++ ++ EK D++ E + ++D +A+ D A+ K L TL+ T
Sbjct: 267 ------NAPKIAEK---DIVRETITIRTIYD------CVAAPPPD---AIKKILSTLLST 308
Query: 329 SGGDMRRAITCLQSCARLKGGEGIVNEDV----------LEVTGVIPNPWIEKLLKVD 376
S TCL + LK +G+ D+ LEV + W+++L K++
Sbjct: 309 SD-----VTTCLSTINTLKVAQGLALADIITALSEEIVKLEVKPQVMITWLDELAKIE 361
>gi|336467972|gb|EGO56135.1| hypothetical protein NEUTE1DRAFT_130196 [Neurospora tetrasperma
FGSC 2508]
gi|350289788|gb|EGZ71013.1| P-loop containing nucleoside triphosphate hydrolase protein
[Neurospora tetrasperma FGSC 2509]
Length = 389
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 134/358 (37%), Positives = 196/358 (54%), Gaps = 53/358 (14%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++ DV QQ++++ + K + LPH LFYGPPGTGKTST++A Q++G
Sbjct: 43 LPWVEKYRPVSLSDVSGQQDILATINKFVDTNRLPHLLFYGPPGTGKTSTVLALARQIYG 102
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPCPPFKIVILDEADS 148
R+ +LELNASDDRGI V+R+++KTFA Q + G + FK++ILDEAD+
Sbjct: 103 TANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGSSSSRSGLAGFKLIILDEADA 162
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + + +
Sbjct: 163 MTSTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEKDIRVLVDKV 222
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWI 268
++E+V A + LV S GDMRRA+ LQ+C T + PK
Sbjct: 223 IDEENVKILPDATDALVRLSKGDMRRALNVLQACH-------------ASSTPLQPK--- 266
Query: 269 EKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVET 328
++ ++ EK D++ E + ++D +A+ D A+ K L TL+ T
Sbjct: 267 ------NAPKIAEK---DIVRETITIRTIYD------CVAAPPPD---AIKKILSTLLST 308
Query: 329 SGGDMRRAITCLQSCARLKGGEGIVNEDV----------LEVTGVIPNPWIEKLLKVD 376
S TCL + LK +G+ D+ LEV + W+++L K++
Sbjct: 309 SD-----VTTCLSTINTLKVAQGLALADIITALSEEIIKLEVKPQVMITWLDELAKIE 361
>gi|428167624|gb|EKX36580.1| replication factor C subunit 4 [Guillardia theta CCMP2712]
Length = 350
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 113/250 (45%), Positives = 158/250 (63%), Gaps = 9/250 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PW+EKYRP+T++DV+ +++++ L + L LPH L YGPPGTGKTST++A ++FG
Sbjct: 23 PWIEKYRPETLNDVVAHKDILTTLDRFLEQDRLPHLLLYGPPGTGKTSTVLALAKKVFGP 82
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC-PPFKIVILDEADSMTHA 152
Y+ LELNASDDRGI V++ ++K FA T + F C FK++ILDEAD+MT
Sbjct: 83 KYKSMTLELNASDDRGIDVVKKEIKDFA-GTRTIFGLIVLLCRTGFKMIILDEADNMTQT 141
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +E T + RFCLICNYV+ II L SRC++FRF PL + L+ I ++E
Sbjct: 142 AQFALRRIIENYTANARFCLICNYVNKIIPALQSRCTRFRFSPLTSADIQGNLERILDKE 201
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP----WI 268
++ AL+ + + SGGDMR+ + LQS + + + E + E TG P P WI
Sbjct: 202 NIKATPDALKAVEKISGGDMRKCLNILQSSSM--ASKEVTVESIYECTGD-PNPSDVMWI 258
Query: 269 EKLLKVDSFQ 278
L DSF+
Sbjct: 259 THSLCNDSFE 268
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 62/138 (44%), Gaps = 12/138 (8%)
Query: 316 KALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP----WIEK 371
KA AL+ + + SGGDMR+ + LQS + + + E + E TG PNP WI
Sbjct: 204 KATPDALKAVEKISGGDMRKCLNILQSSSM--ASKEVTVESIYECTGD-PNPSDVMWITH 260
Query: 372 LLKVDSFQ-VLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 430
L DSF+ K E + + + H+ ++ L +LE L++ R
Sbjct: 261 SLCNDSFEDCYHKIFEIQREKGLALIDIVRAVHEQIIK-HDLPSVPFCRLLESLSDLEYR 319
Query: 431 LQDGASEYIQILDLGSIV 448
L +E IQ LGS V
Sbjct: 320 LTAATNEKIQ---LGSFV 334
>gi|157123250|ref|XP_001660080.1| replication factor c / DNA polymerase iii gamma-tau subunit [Aedes
aegypti]
gi|108874432|gb|EAT38657.1| AAEL009465-PA [Aedes aegypti]
Length = 330
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 99/210 (47%), Positives = 144/210 (68%), Gaps = 8/210 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+ D+I +E++S + K + LPH LFYGPPGTGKTST++A QL+
Sbjct: 9 LPWVEKYRPATLSDLISHEEIISTINKFIQEEQLPHLLFYGPPGTGKTSTILACARQLYK 68
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
+ + +LELNASDDRGI ++R+++ FA T + F+ +K++ILDEAD+MT+
Sbjct: 69 PQSFNQMVLELNASDDRGINIVRNQILNFAS-TRTIFSGG------YKLIILDEADAMTN 121
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T + RFC+ICNY+S II L SRC++FRF PL+ + +L RL+++ +
Sbjct: 122 DAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLSPDQILPRLEHVIDA 181
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQS 241
E + + L+ +GGDMR+ + LQS
Sbjct: 182 EGIKVSDDGKKALMTLAGGDMRKVLNVLQS 211
>gi|432328759|ref|YP_007246903.1| DNA polymerase III, gamma/tau subunit [Aciduliprofundum sp.
MAR08-339]
gi|432135468|gb|AGB04737.1| DNA polymerase III, gamma/tau subunit [Aciduliprofundum sp.
MAR08-339]
Length = 320
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 111/239 (46%), Positives = 150/239 (62%), Gaps = 9/239 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRPK +D+V+ Q+E+V LK + +PH LF GP GTGKT+ IA +LFGD
Sbjct: 5 WVEKYRPKNLDEVVGQKEIVERLKSYVKAKSMPHLLFAGPAGTGKTTCAIALARELFGDN 64
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R ELNASD+RGI ++R K+K +A+ A N G FKI+ LDEAD++T AQ
Sbjct: 65 WRSSFHELNASDERGIGIVRTKIKEYARTAAP--NDVG-----FKIIFLDEADALTPDAQ 117
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTME +++ RF L CNY S II+P+ SRC+ FRF PL + RL+YI E E
Sbjct: 118 AALRRTMEMYSRTCRFILSCNYSSKIIEPIQSRCAVFRFTPLKAEDIKKRLRYIAENEGK 177
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK 273
AL+ +V S GDMR+AI LQ A + + I V + TG+ + +E+++K
Sbjct: 178 EITDDALDAIVYISSGDMRKAINILQMSAAI--SDTIDEGTVYKATGIAKREDVEEVVK 234
Score = 44.7 bits (104), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV----D 376
AL+ +V S GDMR+AI LQ A + + I V + TG+ +E+++K D
Sbjct: 183 ALDAIVYISSGDMRKAINILQMSAAI--SDTIDEGTVYKATGIAKREDVEEVVKKALGGD 240
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
K + L+ S + Q H ++ + D+ K +L++ E R+ +GA+
Sbjct: 241 FISARNKLNKLLVELGLSGEDVIKQIHRVIYDL-PIDDRLKVELLDRTGEIEFRMVEGAN 299
Query: 437 EYIQI 441
E IQ+
Sbjct: 300 ERIQL 304
>gi|307110140|gb|EFN58376.1| hypothetical protein CHLNCDRAFT_59565 [Chlorella variabilis]
Length = 340
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 106/224 (47%), Positives = 147/224 (65%), Gaps = 9/224 (4%)
Query: 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF 91
P+PWVEKYRP I D++ E VS L+ ++P+ + GPPGTGKT++++ H+L
Sbjct: 21 PLPWVEKYRPTRIKDIVGNVEAVSRLQIIAEEGNMPNIILAGPPGTGKTTSILCLAHELL 80
Query: 92 GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
G +RE +LELNASDDRGI V+R+K+K FAQQ + P KIVILDEADSMT
Sbjct: 81 GPNFREAVLELNASDDRGIDVVRNKIKMFAQQKVT------LPLGRHKIVILDEADSMTS 134
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME + +TRF L CN S II+P+ SRC+ R+ L++ +L RL ++C++
Sbjct: 135 GAQQALRRTMEIYSSTTRFALACNQSSKIIEPIQSRCAIVRYSKLSDKELLQRLLHVCQE 194
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255
E V LE +V T+ GDMR+A+ +Q+ A G G+V++D
Sbjct: 195 EGVAHTPDGLEAVVFTADGDMRQALNNVQATA---NGFGLVSQD 235
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 13/131 (9%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQV 380
LE +V T+ GDMR+A+ +Q+ A G G+V++D + P+P L+
Sbjct: 203 GLEAVVFTADGDMRQALNNVQATA---NGFGLVSQDHVFRVCDQPHPV---LVSSVVRHC 256
Query: 381 LEKYIED-------LILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQD 433
L+ I+D L YSA+ + +V + + +++ K ++++ C+ R+ D
Sbjct: 257 LDARIDDAYEGLRALCDMGYSASDIITILFRVVRNFTGMNEYLKLEYIKQIGFCHMRVGD 316
Query: 434 GASEYIQILDL 444
G + +Q+ L
Sbjct: 317 GVNSRLQLSGL 327
>gi|346472797|gb|AEO36243.1| hypothetical protein [Amblyomma maculatum]
Length = 327
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 101/220 (45%), Positives = 148/220 (67%), Gaps = 8/220 (3%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
SGK +PWVEKYRP+ +DD+I ++++S + + + LPH LFYGPPGTGKTST++
Sbjct: 2 SGKEATSNLPWVEKYRPQKLDDLIAHEDIISTIGRFIKEDRLPHLLFYGPPGTGKTSTIL 61
Query: 85 AACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A Q++ + ++LELNASDDRGI ++R ++ +FA T + FN FK+++L
Sbjct: 62 ACAQQIYSPKEFTSKVLELNASDDRGIGIVRGEILSFAS-TKTIFNTG------FKLIVL 114
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT+ AQ ALRR +EK T++ RFCLICNY+S II L SRC++FRF PL+ M
Sbjct: 115 DEADAMTNDAQNALRRVIEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLSTAQMSP 174
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
R+ ++ QE + + L++ + GDMR+A+ LQS +
Sbjct: 175 RIDHVITQERLTVTADGKKALMDLAQGDMRKALNILQSTS 214
>gi|448312591|ref|ZP_21502333.1| replication factor C small subunit [Natronolimnobius
innermongolicus JCM 12255]
gi|445601042|gb|ELY55036.1| replication factor C small subunit [Natronolimnobius
innermongolicus JCM 12255]
Length = 330
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 107/289 (37%), Positives = 166/289 (57%), Gaps = 14/289 (4%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
S+ + T K W+EKYRP+ +D++ + ++ LK + DLPH +F GP G
Sbjct: 2 SEADAEAAEPTPGKTEVWIEKYRPERLDEIKGHENIIPRLKNYVEQDDLPHIMFAGPAGV 61
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKT++ A +++GD +RE LELNASD RGI V+RD++K FA+ + G+N
Sbjct: 62 GKTASSQAIAREIYGDDWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYN-------- 113
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
++I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L
Sbjct: 114 YRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELT 173
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
++ + +++ I + E + ++ LV + GDMR+AI LQ+ A + GE + E V
Sbjct: 174 DDAIEAQVREIADTEGIAVTDDGVDALVYAADGDMRKAINGLQAAAVM--GETVDEETVF 231
Query: 258 EVTGVIPKPWIEKLLK---VDSFQVLEKYIEDLILE-AYSATQLFDQFH 302
+T +E ++ F +EDL++E + + DQ H
Sbjct: 232 AITSTARPEEVEAMVDHAIAGDFTAARAALEDLLMERGLAGGDVIDQLH 280
Score = 49.3 bits (116), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 11/126 (8%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDS 377
++ LV + GDMR+AI LQ+ A + GE + E V +T +E ++
Sbjct: 196 GVDALVYAADGDMRKAINGLQAAAVM--GETVDEETVFAITSTARPEEVEAMVDHAIAGD 253
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALI--LEKLAECNARLQDG 434
F +EDL++E + + DQ H SA ++A + LE+L E + R+ +G
Sbjct: 254 FTAARAALEDLLMERGLAGGDVIDQLH---RSAWEFDIPEQATVRLLERLGEVDYRITEG 310
Query: 435 ASEYIQ 440
A+E +Q
Sbjct: 311 ANERLQ 316
>gi|224066809|ref|XP_002302226.1| predicted protein [Populus trichocarpa]
gi|222843952|gb|EEE81499.1| predicted protein [Populus trichocarpa]
Length = 363
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 110/247 (44%), Positives = 147/247 (59%), Gaps = 6/247 (2%)
Query: 15 PSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGP 74
P+ K V + K PWVEKYRP+++ DV ++++ + + S LPH L YGP
Sbjct: 22 PNKGKKVVVPATPPGGKATPWVEKYRPQSLADVAAHRDIIDTIDRLTSENRLPHLLLYGP 81
Query: 75 PGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134
PGTGKTST++A +L+G Y ILELNASDDRGI V+R +++ FA + F
Sbjct: 82 PGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRKQIQDFASTQSFSFGAKAS- 140
Query: 135 CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
K+V+LDEAD+MT AQ ALRR +EK TK+TRF LICN+V+ II L SRC++FRF
Sbjct: 141 ---VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFA 197
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 254
PL + RL+++ E E + LE L S GDMR+A+ LQS + I E
Sbjct: 198 PLDPMHVGERLKHVIEAEGLDVPESGLEALKCLSNGDMRKALNILQSTH--MASQQITEE 255
Query: 255 DVLEVTG 261
V TG
Sbjct: 256 TVYLCTG 262
>gi|315230688|ref|YP_004071124.1| replication factor C small subunit [Thermococcus barophilus MP]
gi|315183716|gb|ADT83901.1| replication factor C small subunit [Thermococcus barophilus MP]
Length = 326
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 112/273 (41%), Positives = 158/273 (57%), Gaps = 13/273 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ +DD++ Q +V LK + +PH LF GPPG GKT+ + +LFG+
Sbjct: 14 PWVEKYRPQRLDDIVGQDHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALCLTRELFGE 73
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD+RGI VIR+KVK FA+ G FKI+ LDEAD++T A
Sbjct: 74 HWRHNFLELNASDERGINVIREKVKEFARTKPIG-------GASFKIIFLDEADALTQDA 126
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME + + RF L CNY S II+P+ SRC+ FRF+PL + + R+++I E E
Sbjct: 127 QQALRRMMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLKDEDIAKRIRFIAENEG 186
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL-- 271
+ + L+ L+ + GD+RRAI LQ+ A L I +E+V V I ++
Sbjct: 187 LELTEEGLQALLYIAEGDLRRAINVLQAAAALDT--KITDENVFLVASRARPEDIREMML 244
Query: 272 --LKVDSFQVLEKYIEDLILEAYSATQLFDQFH 302
L+ + + EK E L+ + S + Q H
Sbjct: 245 MALEGNFLKAREKLREILLKQGLSGEDVLIQMH 277
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL----LKV 375
+ L+ L+ + GD+RRAI LQ+ A L I +E+V V I ++ L+
Sbjct: 192 EGLQALLYIAEGDLRRAINVLQAAAALDTK--ITDENVFLVASRARPEDIREMMLMALEG 249
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
+ + EK E L+ + S + Q H V + +S+ +K + +K+ E N RL +GA
Sbjct: 250 NFLKAREKLREILLKQGLSGEDVLIQMHKEVFNLP-ISEPKKVALADKIGEYNFRLVEGA 308
Query: 436 SEYIQI 441
+E IQ+
Sbjct: 309 NEMIQL 314
>gi|48097300|ref|XP_393747.1| PREDICTED: replication factor C subunit 5-like [Apis mellifera]
Length = 328
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 152/239 (63%), Gaps = 10/239 (4%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
S T++ +PWVEKYRPK +DD+I +E++ + K + LPH LFYGPPGTGKTST+
Sbjct: 2 NSKPTQSTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENLLPHLLFYGPPGTGKTSTI 61
Query: 84 IAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
+A +L+ + +LE+NASDDRGI ++R ++ +FA T + + FK++I
Sbjct: 62 LACARKLYTSAQFNSMVLEMNASDDRGINIVRGQILSFAS-TGTMYKSG------FKLII 114
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT+ AQ ALRR +EK T + RFC+ICNY+S II L SRC+KFRF PL+ + +L
Sbjct: 115 LDEADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSIDQIL 174
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
RL I ++E++ + L+ SGGDMR+ + LQS G + E+V G
Sbjct: 175 PRLDTIIKEENLNVTEDGKQALITLSGGDMRKVLNVLQSTWLAFG--AVTEENVYSCVG 231
>gi|170087828|ref|XP_001875137.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650337|gb|EDR14578.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 334
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 124/321 (38%), Positives = 186/321 (57%), Gaps = 35/321 (10%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY 95
VEKYRP T+DDV+ +++ + +++ + LPH LFYGPPGTGKTST++A +++G Y
Sbjct: 18 VEKYRPVTLDDVVSHKDITNTIERFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGAQY 77
Query: 96 RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
R++ILELNASD+RGI V+R++VK FA +T + F + FK++ILDEAD MT AQA
Sbjct: 78 RKQILELNASDERGIDVVREQVKQFA-ETRTLFAKG------FKLIILDEADMMTQQAQA 130
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
ALRR +E+ TK+ RFC+ICNYV+ I + SRC++FRF PL + R++ + E E V
Sbjct: 131 ALRRVIEQYTKNVRFCIICNYVNKITPAIQSRCTRFRFSPLPAIEVEKRVKTVVEAEQVS 190
Query: 216 CDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW-IEKLLK- 273
+ L++ S GDMRRA+ LQ+C + I ++ TG P P IE ++
Sbjct: 191 LTDDGKKALLKLSRGDMRRALNVLQACH--AAYDTIGETEIYNCTGN-PHPSDIEAIVNS 247
Query: 274 ------VDSFQVLEKY-------IEDLILEAYSATQLFD-QFHDIVMLASSLSDKQKALF 319
S+Q+ K ++DL+ AY + D + H + L L+ + L
Sbjct: 248 MLADEFTASYQMTSKMKTERGLALQDLLTGAYEYLETIDIKPHARIYLLDHLATTEHRL- 306
Query: 320 KALETLVETSGGDMRRAITCL 340
++GG + +T L
Sbjct: 307 --------STGGSEKMQLTAL 319
>gi|257387186|ref|YP_003176959.1| replication factor C small subunit [Halomicrobium mukohataei DSM
12286]
gi|257169493|gb|ACV47252.1| Replication factor C [Halomicrobium mukohataei DSM 12286]
Length = 322
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 105/272 (38%), Positives = 165/272 (60%), Gaps = 14/272 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+ DV+ + +V L+ + DL H LF GP GTGKT++ A +L+GD
Sbjct: 13 WIEKYRPQTLSDVVGHETIVERLQSYVDRNDLSHMLFAGPAGTGKTTSATAIARELYGDD 72
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++E LELNASD+RGI V+RD++K+FA+ + G + ++I+ LDEAD++T AQ
Sbjct: 73 WQEHFLELNASDERGIDVVRDRIKSFARTSFGGVD--------YRIIFLDEADALTSDAQ 124
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + + RF + CNY S II P+ SRC+ FRF PL + + +++I ++E +
Sbjct: 125 SALRRTMEQFSNNVRFIMSCNYSSQIIDPIQSRCAVFRFSPLGDEAVEAEIRHIADEEGI 184
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK- 273
++ LV +GGDMR+AI LQ+ + G+ + E V +T I+ +++
Sbjct: 185 ELTDDGVDALVYAAGGDMRKAINGLQAAS--VSGDVVDEEAVFAITSTARPEVIQGMVQD 242
Query: 274 -VDS-FQVLEKYIEDLIL-EAYSATQLFDQFH 302
+D F ++DLI E + + DQ H
Sbjct: 243 AIDGDFTAARSQLDDLITDEGIAGGDIIDQLH 274
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDS- 377
++ LV +GGDMR+AI LQ+ + G+ + E V +T I+ +++ +D
Sbjct: 190 GVDALVYAAGGDMRKAINGLQAAS--VSGDVVDEEAVFAITSTARPEVIQGMVQDAIDGD 247
Query: 378 FQVLEKYIEDLIL-EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F ++DLI E + + DQ H + + D+Q IL+++ E + R+ +GA+
Sbjct: 248 FTAARSQLDDLITDEGIAGGDIIDQLHRSIWEFD-VPDEQAVRILDRVGETDYRITEGAN 306
Query: 437 EYIQI 441
E IQ+
Sbjct: 307 ERIQL 311
>gi|254168320|ref|ZP_04875166.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|254169364|ref|ZP_04876193.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|289595866|ref|YP_003482562.1| Replication factor C [Aciduliprofundum boonei T469]
gi|197621683|gb|EDY34269.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|197622829|gb|EDY35398.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|289533653|gb|ADD08000.1| Replication factor C [Aciduliprofundum boonei T469]
Length = 317
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 118/277 (42%), Positives = 162/277 (58%), Gaps = 17/277 (6%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRPK++D+V+ Q E+V LK + +PH LF GP GTGKT+ IA +LFG+
Sbjct: 5 WVEKYRPKSLDEVVGQDEIVDRLKSYVKAKTMPHLLFAGPAGTGKTTCAIALARELFGEN 64
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R ELNASD+RGI ++R K+K +A+ A N G FKI+ LDEAD++T AQ
Sbjct: 65 WRASFHELNASDERGIGIVRTKIKEYARTAAP--NDVG-----FKIIFLDEADALTPDAQ 117
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTME +++ RF L CNY S II+P+ SRC+ FRF PL + RL+YI + E
Sbjct: 118 AALRRTMEMYSRTCRFILSCNYSSKIIEPIQSRCAVFRFTPLKSEDIKKRLKYIADSEGK 177
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKG--GEGIVNEDVLEVTGVIPKPWIEKLL 272
AL +V SGGDMR+AI LQ A + EG+ V + TG+ + +E +L
Sbjct: 178 KITEDALNAIVYISGGDMRKAINILQMSAAISDTIDEGV----VYKATGLAKREDVEDVL 233
Query: 273 KV----DSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305
K D + K + L+ S + Q H ++
Sbjct: 234 KKALAGDFIEARNKLNKLLVELGLSGEDVIKQIHRVI 270
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 11/136 (8%)
Query: 312 SDKQKALFKALETLVETSGGDMRRAITCLQSCARLKG--GEGIVNEDVLEVTGVIPNPWI 369
S+ +K AL +V SGGDMR+AI LQ A + EG+ V + TG+ +
Sbjct: 174 SEGKKITEDALNAIVYISGGDMRKAINILQMSAAISDTIDEGV----VYKATGLAKREDV 229
Query: 370 EKLLKV----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 425
E +LK D + K + L+ S + Q H ++ + D+ K +L+K
Sbjct: 230 EDVLKKALAGDFIEARNKLNKLLVELGLSGEDVIKQIHRVIYDL-PIDDRLKVELLDKTG 288
Query: 426 ECNARLQDGASEYIQI 441
E R+ +GA+E IQ+
Sbjct: 289 EIEFRIVEGANERIQL 304
>gi|308800034|ref|XP_003074798.1| rfc5 replication factor C subunit 5 (36kDa), probable (IC)
[Ostreococcus tauri]
gi|119358795|emb|CAL52056.2| rfc5 replication factor C subunit 5 (36kDa), probable (IC)
[Ostreococcus tauri]
Length = 341
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 107/262 (40%), Positives = 159/262 (60%), Gaps = 13/262 (4%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K +PW EKYRP + +V+ + ++ V++K + LPH LF+GPPGTGKTST++A +L
Sbjct: 13 KHLPWTEKYRPLNLSEVVAHETIIDVIRKFAANGRLPHLLFHGPPGTGKTSTVLALTREL 72
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+ + +LELNASD RGI ++RD++++FA TA F+ FK+VI+DE DS+T
Sbjct: 73 YESNHSNMVLELNASDSRGINIVRDEIQSFAS-TARPFSS------AFKLVIMDECDSLT 125
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRR MEK + TRFCLICNY S II + SRC+KFRF P+ ML RL+++
Sbjct: 126 KDAQFALRRIMEKYAQHTRFCLICNYASKIIPAIQSRCTKFRFAPVPAEAMLQRLRHVVC 185
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEK 270
E V +L+T+ GDMRR++ LQS I + + TG++ + + +
Sbjct: 186 SERVQISGASLQTIQRLGEGDMRRSLNVLQSLH--LASTKITSATIHATTGLLDRCEVLE 243
Query: 271 LLKVDSFQVLEKYIEDLILEAY 292
L+V + EK ++ ++ Y
Sbjct: 244 FLQV----LFEKPMKSILNHLY 261
>gi|409051889|gb|EKM61365.1| hypothetical protein PHACADRAFT_111883 [Phanerochaete carnosa
HHB-10118-sp]
Length = 342
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 134/340 (39%), Positives = 183/340 (53%), Gaps = 32/340 (9%)
Query: 16 SSSKTSVSTSGKTRNKP--VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
S+ K +G + P +PWVEKYRPKT+DDV+ E + LK + PH + G
Sbjct: 2 STDKGKAPANGTAASLPYELPWVEKYRPKTLDDVVGNSETIERLKVVARDGNCPHIILSG 61
Query: 74 PPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133
PG GKT+++ HQL GD Y+E +LELNASD+RGI V+R+KVK FAQ+ +
Sbjct: 62 LPGIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIDVVRNKVKAFAQKKVT------- 114
Query: 134 PCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
PP KIVILDEADSMT AQ ALRRTME +TRF L CN + II+P+ SRC+
Sbjct: 115 -LPPGRHKIVILDEADSMTPGAQQALRRTMEIFANTTRFALACNMSNKIIEPIQSRCAIL 173
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
R+ L + +L RL ICE E V + L L+ T+ GDMR+AI LQS G G
Sbjct: 174 RYAKLRDAEVLRRLLEICEMEGVKYNDDGLTALIFTAEGDMRQAINNLQSTF---SGFGF 230
Query: 252 VNED-VLEVTG----VIPKPWIEKLLKVDSFQVLEKYIE---------DLILEAYSATQL 297
V+ D V +V V+ + I LK D +EK E D+++ + +
Sbjct: 231 VSADNVFKVCDQPHPVVVQAMIRSCLKGDVENAMEKLNELWNHGYSAVDIVVTIFRVVKT 290
Query: 298 FDQFHDIVMLA--SSLSDKQKALFKALETLVETSGGDMRR 335
FD+ + L + + + + TL++ GG M R
Sbjct: 291 FDEIPEYTKLEYIKEIGFTHMRILEGVSTLIQL-GGLMAR 329
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----WIEKLLKV 375
L L+ T+ GDMR+AI LQS G G V+ D + P+P I LK
Sbjct: 202 GLTALIFTAEGDMRQAINNLQSTF---SGFGFVSADNVFKVCDQPHPVVVQAMIRSCLKG 258
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
D +EK + +L YSA + +V + + + K ++++ + R+ +G
Sbjct: 259 DVENAMEK-LNELWNHGYSAVDIVVTIFRVVKTFDEIPEYTKLEYIKEIGFTHMRILEGV 317
Query: 436 SEYIQILDLGSIVIKAN 452
S IQ+ L + + K N
Sbjct: 318 STLIQLGGLMARLCKMN 334
>gi|302916499|ref|XP_003052060.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732999|gb|EEU46347.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 389
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 112/245 (45%), Positives = 153/245 (62%), Gaps = 15/245 (6%)
Query: 13 DAPSSSKT---SVSTSGKTR---NKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKC 60
D P+ SK S TS R N PV PWVEKYRP T++DV ++++ + K
Sbjct: 11 DVPAPSKDVLFSADTSKGKRSAANLPVEAEDSLPWVEKYRPNTLEDVSGHHDILATINKF 70
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKT 119
+ LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++KT
Sbjct: 71 VDTNRLPHLLLYGPPGTGKTSTILALARRIYGAANMRQMVLELNASDDRGIDVVREQIKT 130
Query: 120 FA--QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYV 177
FA +Q S + FK+++LDEAD+MT AQ ALRR MEK T +TRFC+I NY
Sbjct: 131 FASTKQIFSLGGASARAGAGFKLIVLDEADAMTSTAQMALRRIMEKYTVNTRFCIIANYA 190
Query: 178 SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAIT 237
+ L SRC++FRF PL E + + + E+E V +A++ LV+ S GDMRRA+
Sbjct: 191 HKLSPALLSRCTRFRFSPLKEADIRVLVDKVVEEEHVKIGGEAVDALVKLSKGDMRRALN 250
Query: 238 CLQSC 242
LQ+C
Sbjct: 251 VLQAC 255
>gi|409083800|gb|EKM84157.1| hypothetical protein AGABI1DRAFT_110722 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 341
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 126/290 (43%), Positives = 167/290 (57%), Gaps = 21/290 (7%)
Query: 17 SSKTSVSTSGKTRNKP--VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGP 74
S+ +T+G P +PWVEKYRPK +DDV+ + + LK + PH + G
Sbjct: 2 STSKGKATNGNAATDPYELPWVEKYRPKVLDDVVGNSDTIERLKVIARDGNCPHLIISGL 61
Query: 75 PGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134
PG GKT+++ HQL GD Y+E +LELNASD+RGI+V+R K+K FAQ+ +
Sbjct: 62 PGIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIEVVRTKIKQFAQKKVT-------- 113
Query: 135 CPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
PP KIVILDEADSMT AQ ALRRTME + +TRFCL CN + II+P+ SRC+ R
Sbjct: 114 LPPGRHKIVILDEADSMTPGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILR 173
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
+ L + +L RL ICE+E V + L L+ TS GDMR+AI LQS G G V
Sbjct: 174 YAKLRDQEILKRLLEICEEEDVKYNDDGLTALIFTSEGDMRQAINNLQSTF---SGFGFV 230
Query: 253 NEDVLEVTGVIPKPW-----IEKLLKVDSFQVLEKYIEDLILEAYSATQL 297
+ D + P P I LK D + L K I++L + YSA +
Sbjct: 231 SGDNVFKICDQPHPIVVQAAIRSCLKGDVDEALGK-IKELWDQGYSAVDI 279
Score = 38.5 bits (88), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 9/137 (6%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-----IEKLLKV 375
L L+ TS GDMR+AI LQS G G V+ D + P+P I LK
Sbjct: 201 GLTALIFTSEGDMRQAINNLQSTF---SGFGFVSGDNVFKICDQPHPIVVQAAIRSCLKG 257
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
D + L K I++L + YSA + +V + + + K ++++ + R+ +G
Sbjct: 258 DVDEALGK-IKELWDQGYSAVDIVVTLFRVVKTFDEVPEYTKLEFIKEIGFTHMRILEGV 316
Query: 436 SEYIQILDLGSIVIKAN 452
+Q+ L + + K N
Sbjct: 317 GTLVQLAGLVARLCKMN 333
>gi|350412747|ref|XP_003489747.1| PREDICTED: replication factor C subunit 5-like [Bombus impatiens]
Length = 329
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 145/221 (65%), Gaps = 8/221 (3%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
T T+ +PWVEKYRPK +DD+I +E++ + K + LPH LFYGPPGTGKTST+
Sbjct: 2 TEKPTQTTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENQLPHLLFYGPPGTGKTSTI 61
Query: 84 IAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
+A +L+ + +LE+NASDDRGI ++R ++ +FA T + + FK++I
Sbjct: 62 LACARKLYTPAQFNSMVLEMNASDDRGIGIVRGQILSFAS-TGTMYRSG------FKLII 114
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT AQ ALRR +EK T + RFC+ICNY+S II L SRC+KFRF PL+ + +L
Sbjct: 115 LDEADAMTKDAQNALRRIIEKYTDNVRFCIICNYLSQIIPALQSRCTKFRFGPLSTDQIL 174
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
RL I ++E++ + L+ SGGDMR+ + LQS +
Sbjct: 175 PRLDTIIKEENLNVSEDGKQALITLSGGDMRKVLNVLQSTS 215
>gi|448376175|ref|ZP_21559459.1| replication factor C small subunit [Halovivax asiaticus JCM 14624]
gi|445658193|gb|ELZ11016.1| replication factor C small subunit [Halovivax asiaticus JCM 14624]
Length = 329
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 109/283 (38%), Positives = 166/283 (58%), Gaps = 17/283 (6%)
Query: 27 KTRNKPVP---WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
+T + P P W+EKYRP+++DDV + +V L+K + DLPH +F GP G GKT++
Sbjct: 7 ETESSPDPTGIWIEKYRPESLDDVKGHENIVPRLRKYVEQDDLPHLMFAGPAGVGKTASA 66
Query: 84 IAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A +L+G+ +RE LELNASD+RGI V+RD++K FA+ + G ++I+ L
Sbjct: 67 GAIARELYGEDWREHFLELNASDERGIDVVRDRIKNFARSSFGGVE--------YRIIFL 118
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L++ +
Sbjct: 119 DEADALTSDAQSALRRTMEQFSHNTRFILSCNYSSQIIDPIQSRCAVFRFTELSDEAIEA 178
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
+ + I E E + ++ LV + GDMR+AI LQ+ A + GE + E V +T
Sbjct: 179 QTREIAETEGISLTDDGVDALVYAAAGDMRKAINGLQAAAVM--GEEVDEEAVFAITSTA 236
Query: 264 PKPWIEKLLKV---DSFQVLEKYIEDLILE-AYSATQLFDQFH 302
+E+++ F +EDL+ + + + DQ H
Sbjct: 237 RPEEVERMVDQAIGGDFTAARATLEDLLTDRGLAGGDVIDQLH 279
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
++ LV + GDMR+AI LQ+ A + GE + E V +T +E+++
Sbjct: 195 GVDALVYAAAGDMRKAINGLQAAAVM--GEEVDEEAVFAITSTARPEEVERMVDQAIGGD 252
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F +EDL+ + + + DQ H L + + +LE+L E + R+ +GA+
Sbjct: 253 FTAARATLEDLLTDRGLAGGDVIDQLHRSAWE-FDLGEHETVRLLERLGEVDYRITEGAN 311
Query: 437 EYIQI 441
E +Q+
Sbjct: 312 ERLQL 316
>gi|340518366|gb|EGR48607.1| replication factor C, subunit 3 [Trichoderma reesei QM6a]
Length = 391
Score = 211 bits (538), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 155/247 (62%), Gaps = 17/247 (6%)
Query: 13 DAPSSSK----TSVSTSGK--TRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKC 60
D P S ++ +T GK N PV PWVEKYRP T+DDV Q++++ + K
Sbjct: 11 DGPGPSADITFSAEATKGKRSAANLPVEAEDTLPWVEKYRPVTLDDVSGHQDILATINKF 70
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKT 119
+ LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++KT
Sbjct: 71 VESNRLPHLLLYGPPGTGKTSTILALARRIYGTANMRQMVLELNASDDRGIDVVREQIKT 130
Query: 120 FAQQ----TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175
FA T G G FK++ILDEAD+MT+ AQ ALRR MEK T +TRFC+I N
Sbjct: 131 FASTKQIFTMGGGAAKGNSIAGFKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIAN 190
Query: 176 YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRA 235
Y + L SRC++FRF PL E + ++ + E+E V +A++ LV+ S GDMRRA
Sbjct: 191 YAHKLSPALLSRCTRFRFSPLKEGDIRVLVEKVVEEEGVKIQGEAVDALVKLSKGDMRRA 250
Query: 236 ITCLQSC 242
+ LQ+C
Sbjct: 251 LNVLQAC 257
>gi|340720472|ref|XP_003398661.1| PREDICTED: replication factor C subunit 5-like isoform 1 [Bombus
terrestris]
gi|340720474|ref|XP_003398662.1| PREDICTED: replication factor C subunit 5-like isoform 2 [Bombus
terrestris]
Length = 329
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 102/221 (46%), Positives = 145/221 (65%), Gaps = 8/221 (3%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
T T+ +PWVEKYRPK +DD+I +E++ + K + LPH LFYGPPGTGKTST+
Sbjct: 2 TEKPTQTTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENQLPHLLFYGPPGTGKTSTI 61
Query: 84 IAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
+A +L+ + +LE+NASDDRGI ++R ++ +FA T + + FK++I
Sbjct: 62 LACARKLYTPAQFNSMVLEMNASDDRGIGIVRGQILSFAS-TGTMYRSG------FKLII 114
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT AQ ALRR +EK T + RFC+ICNY+S II L SRC+KFRF PL+ + +L
Sbjct: 115 LDEADAMTKDAQNALRRIIEKYTDNVRFCIICNYLSQIIPALQSRCTKFRFGPLSTDQIL 174
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
RL I ++E++ + L+ SGGDMR+ + LQS +
Sbjct: 175 PRLDAIIKEENLNVSEDGKQALITLSGGDMRKVLNVLQSTS 215
>gi|255558636|ref|XP_002520343.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223540562|gb|EEF42129.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 360
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 103/211 (48%), Positives = 139/211 (65%), Gaps = 4/211 (1%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K PWVEKYRP+++ DV +++V + + + LPH L YGPPGTGKTST++A +L
Sbjct: 35 KATPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKL 94
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+G Y ILELNASDDRGI V+R +++ FA + F+ D K K+V+LDEAD+MT
Sbjct: 95 YGVQYHNMILELNASDDRGIDVVRQQIQDFA--STQSFSFDAKSA--VKLVLLDEADAMT 150
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRR +EK TK+TRF LICN+V+ II L SRC++FRF PL + RL+++ E
Sbjct: 151 KDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDPIHVTDRLKHVIE 210
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQS 241
E + L +V S GDMR+A+ LQS
Sbjct: 211 AEGLDVPEPGLAAVVRLSNGDMRKALNILQS 241
>gi|242218752|ref|XP_002475163.1| predicted protein [Postia placenta Mad-698-R]
gi|220725657|gb|EED79635.1| predicted protein [Postia placenta Mad-698-R]
Length = 332
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 125/293 (42%), Positives = 168/293 (57%), Gaps = 21/293 (7%)
Query: 14 APSSSKTSVSTSGKTRNKP--VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLF 71
A SS+K +G T P +PWVEKYRP+ +DD++ E + LK + PH +
Sbjct: 2 ASSSAKGKAPANGDTSTVPYELPWVEKYRPQVLDDIVGNAETIDRLKVIAKDGNCPHIII 61
Query: 72 YGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131
G PG GKT+++ HQL GD Y+E +LELNASD+RGI V+R+K+K FAQ+ +
Sbjct: 62 SGMPGIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIDVVRNKIKAFAQKKVT----- 116
Query: 132 GKPCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189
PP KIVILDEADSMT AQ ALRRTME +TRF L CN + II+P+ SRC+
Sbjct: 117 ---LPPGRHKIVILDEADSMTPGAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCA 173
Query: 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249
R+ L + +L RL ICE E V + L L+ TS GDMR+AI LQS G
Sbjct: 174 ILRYAKLRDTEILKRLLEICEMEKVQYNDDGLTALIFTSEGDMRQAINNLQST---HSGF 230
Query: 250 GIVNED-VLEVTG----VIPKPWIEKLLKVDSFQVLEKYIEDLILEAYSATQL 297
G ++ D V +V +I + I +K D +EK + +L + YSA +
Sbjct: 231 GFISGDNVFKVCDQPHPIIVQSIIRACIKSDIDGAMEK-LNELWDQGYSAVDI 282
>gi|325958394|ref|YP_004289860.1| replication factor C small subunit [Methanobacterium sp. AL-21]
gi|325329826|gb|ADZ08888.1| Replication factor C small subunit [Methanobacterium sp. AL-21]
Length = 347
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 145/226 (64%), Gaps = 10/226 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+D+V+ Q+ + LK+ + ++P+ +F GP G GKT+T IA ++ G+
Sbjct: 30 PWVEKYRPQTLDEVVGQEHTILRLKRYVKEGNMPNLMFTGPAGVGKTTTSIALAKEMLGE 89
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R+ LELNASD RGI +R+ +K+F + A G PF+I+ LDE D+MT A
Sbjct: 90 YWRQNFLELNASDARGIDTVRNDIKSFCRLKAVG--------SPFRIIFLDEVDNMTKDA 141
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME TK++ F L CNY S II P+ SRC+ FRF P+ + ++ RL+YI + E
Sbjct: 142 QHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFVPVKGHQIIKRLEYIAQAEG 201
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 259
+ D A+E++V + GDMRRA+ LQ+ + GE + E V EV
Sbjct: 202 LKIDIAAIESIVYFAEGDMRRAVNILQASS--SAGEEVTEESVDEV 245
Score = 38.1 bits (87), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 11/129 (8%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP----NPWIEKLLKVD 376
A+E++V + GDMRRA+ LQ+ + GE + E V EV + K L D
Sbjct: 208 AIESIVYFAEGDMRRAVNILQASS--SAGEEVTEESVDEVVSKAKPKDVKKIVNKALDGD 265
Query: 377 SFQVLEKYIEDLILEAYSA----TQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQ 432
E + ++++ S TQ++ + + + SL++ ++E + E + R++
Sbjct: 266 FIGARELLRDVMVVQGTSGEDMVTQIYQEVSKMALDG-SLNEDIYINLVESIGETDYRIR 324
Query: 433 DGASEYIQI 441
+G++ IQ+
Sbjct: 325 EGSNPRIQL 333
>gi|67610162|ref|XP_667086.1| replication factor C3 [Cryptosporidium hominis TU502]
gi|54658182|gb|EAL36856.1| replication factor C3 [Cryptosporidium hominis]
Length = 377
Score = 211 bits (537), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 165/293 (56%), Gaps = 31/293 (10%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP + D++ +++++ ++K +S LPH LF+GPPGTGKTST+ A ++
Sbjct: 6 LPWVEKYRPSGLQDLLSHKDIINTIEKFISSGQLPHLLFHGPPGTGKTSTIHAISKCIYK 65
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP------------------ 134
D + +LELNASDDRGI V+RD +K+F++ ++ N G
Sbjct: 66 DRKYQMVLELNASDDRGINVVRDAIKSFSESASTTLNHSGGTNSNIEYIEMSDVSTRNLD 125
Query: 135 -----CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189
C K++ILDEAD MT AQ ALRR ME+ ++ RFC+ICNYV+ I L SRC+
Sbjct: 126 CNKSLCENIKLIILDEADMMTSTAQMALRRIMERYSEHVRFCIICNYVNKITPALQSRCT 185
Query: 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249
+FRF PL + R+ I E + + E+L+++S GDMR+ + LQSC+ G
Sbjct: 186 RFRFSPLPIEDIRNRISEIALSERIFVTREGQESLIKSSRGDMRKVLNVLQSCSMSNYGN 245
Query: 250 GIVNEDVLEVTGV--------IPKPWIEKLLKVDSFQVLEKYIEDLILEAYSA 294
++D E+ GV I + I ++L + + L+ L E++S+
Sbjct: 246 IQKHKDSGELNGVSIEGLITYINEEMIHRILGIPTKSELDYIFGILSRESFSS 298
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 25/156 (16%)
Query: 310 SLSDKQKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV------ 363
+LS++ + E+L+++S GDMR+ + LQSC+ G ++D E+ GV
Sbjct: 205 ALSERIFVTREGQESLIKSSRGDMRKVLNVLQSCSMSNYGNIQKHKDSGELNGVSIEGLI 264
Query: 364 --IPNPWIEKLLKVDSFQVLEKYIEDLILEAYS---------------ATQLF-DQFHDI 405
I I ++L + + L+ L E++S +TQ F + +
Sbjct: 265 TYINEEMIHRILGIPTKSELDYIFGILSRESFSSGFSALQNSQNKNGYSTQDFVNGLYSK 324
Query: 406 VMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
M A + D+ L++ +LA+ RL GASE IQ+
Sbjct: 325 SMEA-NWPDEVVPLLMRRLADIEYRLSRGASESIQL 359
>gi|390604618|gb|EIN14009.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 342
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 134/335 (40%), Positives = 178/335 (53%), Gaps = 31/335 (9%)
Query: 7 TGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADL 66
T LGK ++ +V+ +PWVEKYRPK +DDV+ E + LK +
Sbjct: 2 TSTLGKGKGPATNGTVAYE-------LPWVEKYRPKVLDDVVGNIETIERLKVIARDGNC 54
Query: 67 PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTAS 126
PH + G PG GKT+++ HQL G+ Y+E +LELNASD+RGI+V+R+K+KTFAQ+ +
Sbjct: 55 PHIIISGMPGIGKTTSIHCLAHQLLGNAYKEGVLELNASDERGIEVVRNKIKTFAQKKVT 114
Query: 127 GFNQDGKPCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPL 184
PP KIVILDEADSMT AQ ALRRTME +TRFCL CN + II+P+
Sbjct: 115 --------LPPGRHKIVILDEADSMTAGAQQALRRTMEIYANTTRFCLACNMSNKIIEPI 166
Query: 185 TSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244
SRC+ R+ L + +L RL ICE E V + L L+ TS GDMR+AI LQS
Sbjct: 167 QSRCAILRYSKLRDTELLKRLLEICELEKVKYNDDGLTALIFTSEGDMRQAINNLQSTW- 225
Query: 245 LKGGEGIVNEDVLEVTGVIPKP-----WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFD 299
G G V+ D + P P I K D +EK + DL + YSA +
Sbjct: 226 --SGFGFVSGDNVFKVCDQPHPITVQTIIRACQKSDLDTAMEK-LNDLWEQGYSAVDIVV 282
Query: 300 QFHDIVMLASSLSDKQKALFKALETLVETSGGDMR 334
+V L + + LE + E MR
Sbjct: 283 TIFRVVKTMDDLPE-----YTELEYIKEIGFTHMR 312
>gi|281344058|gb|EFB19642.1| hypothetical protein PANDA_008377 [Ailuropoda melanoleuca]
Length = 318
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 154/238 (64%), Gaps = 10/238 (4%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM- 94
VEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++A QL+ D
Sbjct: 1 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 60
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+ +LELNASDDRGI ++R + +FA T + F + FK+VILDEAD+MT AQ
Sbjct: 61 FGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEADAMTQDAQ 113
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+++ ++E V
Sbjct: 114 NALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIKEEKV 173
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
++ LV + GDMRRA+ LQS G + E V TG K I +L
Sbjct: 174 DLSEDGMKALVTLASGDMRRALNILQSTNMAFG--KVTEETVYTCTGHPLKSDIANIL 229
>gi|115449001|ref|NP_001048280.1| Os02g0775200 [Oryza sativa Japonica Group]
gi|46805779|dbj|BAD17147.1| putative replication factor C 36kDa subunit [Oryza sativa Japonica
Group]
gi|46806135|dbj|BAD17365.1| putative replication factor C 36kDa subunit [Oryza sativa Japonica
Group]
gi|113537811|dbj|BAF10194.1| Os02g0775200 [Oryza sativa Japonica Group]
gi|215697717|dbj|BAG91711.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218191668|gb|EEC74095.1| hypothetical protein OsI_09136 [Oryza sativa Indica Group]
Length = 361
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 118/269 (43%), Positives = 157/269 (58%), Gaps = 14/269 (5%)
Query: 23 STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
ST G + PWVEKYRP+++ DV +++V + + + LPH L YGPPGTGKTST
Sbjct: 31 STPG---GRAAPWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTST 87
Query: 83 MIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
++A +L+G Y ILELNASD+RGI V+R +++ FA + F K+V+
Sbjct: 88 ILAVARKLYGSQYGNMILELNASDERGIDVVRQQIQDFASARSLSFGAKQS----VKMVL 143
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT AQ ALRR +EK T+STRF LICN+V+ II L SRC++FRF PL +
Sbjct: 144 LDEADAMTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVR 203
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
RL++I + E + D L LV S GDMR+A+ LQS + I E V TG
Sbjct: 204 ERLKHIIQSEGLDVDDGGLTALVRLSNGDMRKALNILQSTH--MASKQITEEAVYLCTGN 261
Query: 263 IPKP----WIEKLLKVDSFQVLEKYIEDL 287
P P I L +SF K I D+
Sbjct: 262 -PMPKDIEQIAYWLLNESFSTSFKCISDM 289
>gi|10798790|dbj|BAB16439.1| replication factor C 36kDa subunit [Oryza sativa Japonica Group]
Length = 367
Score = 211 bits (536), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 140/219 (63%), Gaps = 7/219 (3%)
Query: 23 STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
ST G + PWVEKYRP+++ DV +++V + + + LPH L YGPPGTGKTST
Sbjct: 31 STPG---GRAAPWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTST 87
Query: 83 MIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
++A +L+G Y ILELNASD+RGI V+R +++ FA + F K+V+
Sbjct: 88 ILAVARKLYGSQYGNMILELNASDERGIDVVRQQIQDFASARSLSFGAKQS----VKMVL 143
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT AQ ALRR +EK T+STRF LICN+V+ II L SRC++FRF PL +
Sbjct: 144 LDEADAMTKDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVR 203
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
RL++I + E + D L LV S GDMR+A+ LQS
Sbjct: 204 ERLKHIIQSEGLDVDDGGLTALVRLSNGDMRKALNILQS 242
>gi|295658083|ref|XP_002789604.1| replication factor C subunit 3 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283157|gb|EEH38723.1| replication factor C subunit 3 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 404
Score = 211 bits (536), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 100/215 (46%), Positives = 139/215 (64%), Gaps = 5/215 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +++DV +V+ + + LPH L YGPPGTGKTST++A +++G
Sbjct: 45 MPWVEKYRPNSLEDVSGHHDVIGTINTFIDSNRLPHLLLYGPPGTGKTSTILALARRIYG 104
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQ----TASGFNQDGKPCPPFKIVILDEAD 147
R+ +LELNASDDRGI V+RD++KTFA + + + FK++ILDEAD
Sbjct: 105 AKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSVAPVAKSESSLGAFKLIILDEAD 164
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR MEK T + RFC+I NY + L SRC++FRF PL E + +
Sbjct: 165 AMTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRALVNQ 224
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E V +A+++LVE S GDMRRA+ LQ+C
Sbjct: 225 VIEKEQVRIQPEAIDSLVELSKGDMRRALNVLQAC 259
>gi|119499175|ref|XP_001266345.1| DNA replication factor C subunit Rfc3, putative [Neosartorya
fischeri NRRL 181]
gi|119414509|gb|EAW24448.1| DNA replication factor C subunit Rfc3, putative [Neosartorya
fischeri NRRL 181]
Length = 396
Score = 211 bits (536), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 102/216 (47%), Positives = 143/216 (66%), Gaps = 6/216 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV Q++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 45 LPWVEKYRPNTLDDVSGHQDILATINKFIEANRLPHLLLYGPPGTGKTSTILALARRIYG 104
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQ-----QTASGFNQDGKPCPPFKIVILDEA 146
+ R+ +LELNASDDRGI V+R+++KTFA A+ G FK++ILDEA
Sbjct: 105 SNNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAAPSASSGSSLASFKLIILDEA 164
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR ME+ T +TRFC+I NY + L SRC++FRF PL E + + +
Sbjct: 165 DAMTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRSLVD 224
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E + +A+ +LV S GDMRRA+ LQ+C
Sbjct: 225 QVIEKEQIHIQPEAVSSLVRLSKGDMRRALNVLQAC 260
>gi|134083012|emb|CAK42775.1| unnamed protein product [Aspergillus niger]
Length = 342
Score = 211 bits (536), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 112/250 (44%), Positives = 155/250 (62%), Gaps = 20/250 (8%)
Query: 13 DAPSSSK---TSVSTSGKTR----NKPV------PWVEKYRPKTIDDVIEQQEVVSVLKK 59
D PS S +S +TSGK + + PV PWVEKYRP T++DV Q++++ + K
Sbjct: 11 DVPSKSAIQFSSDNTSGKAKRVAADLPVEAQDNLPWVEKYRPNTLEDVSGHQDILATINK 70
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVK 118
+ LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++K
Sbjct: 71 FVEANRLPHLLLYGPPGTGKTSTILALARRIYGAKNMRQMVLELNASDDRGIDVVREQIK 130
Query: 119 TFAQ------QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172
TFA S + +K++ILDEAD+MT AQ ALRR MEK T +TRFC+
Sbjct: 131 TFASTKQIFSMAPSSTSTSSSTLASYKLIILDEADAMTATAQMALRRIMEKYTANTRFCI 190
Query: 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDM 232
I NY + L SRC++FRF PL E + + + E+E V +A+++LV S GDM
Sbjct: 191 IANYTHKLSPALLSRCTRFRFSPLKEADIRVLVDIVIEKEQVNIQPEAVDSLVRLSKGDM 250
Query: 233 RRAITCLQSC 242
RRA+ LQ+C
Sbjct: 251 RRALNVLQAC 260
>gi|328855833|gb|EGG04957.1| hypothetical protein MELLADRAFT_72257 [Melampsora larici-populina
98AG31]
Length = 349
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 122/306 (39%), Positives = 177/306 (57%), Gaps = 20/306 (6%)
Query: 7 TGKLGKDAPSSSKTSVSTSGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGAD 65
+G AP+ K++ ++SGK ++ + +PWVEKYRP +DD+ E + LK +
Sbjct: 2 SGSTSTAAPA--KSNGTSSGKKKSSEDIPWVEKYRPIILDDITGNVETIERLKVIARDGN 59
Query: 66 LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTA 125
PH + G PG GKT++++ H L GD Y+E +LELNASD+RGI V+R+K+KTFA
Sbjct: 60 CPHIIISGAPGIGKTTSILCLAHALLGDSYKEGVLELNASDERGIDVVRNKIKTFANTKV 119
Query: 126 SGFNQDGKPCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183
+ PP KI+ILDEADSMT AQ ALRRTME STRF L CN+ S II+P
Sbjct: 120 T--------LPPGRHKIIILDEADSMTSGAQQALRRTMEIYANSTRFALACNFSSKIIEP 171
Query: 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
+ SRC+ R+ L++ +L RL IC+ E+V + L ++ T+ GDMR+AI LQS
Sbjct: 172 IQSRCAILRYGKLSDQEILKRLVEICDAENVKYANEGLAAIIFTAEGDMRQAINNLQST- 230
Query: 244 RLKGGEGIVNEDVLEVTGVIPKPWIEKLL----KVDSFQVLEKYIEDLILEAYSATQLFD 299
+ G E + +E V +V P P + K L + Q + +++L + YSA +
Sbjct: 231 -VSGFEFVSSEAVFKVCDQ-PHPIVIKQLLAACEKGEVQTALESLDELWTQGYSAIDIVT 288
Query: 300 QFHDIV 305
+V
Sbjct: 289 TLSKVV 294
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL----KV 375
+ L ++ T+ GDMR+AI LQS + G E + +E V +V P+P + K L +
Sbjct: 207 EGLAAIIFTAEGDMRQAINNLQST--VSGFEFVSSEAVFKVCDQ-PHPIVIKQLLAACEK 263
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
Q + +++L + YSA + +V S +++ K ++++ + R+ +G
Sbjct: 264 GEVQTALESLDELWTQGYSAIDIVTTLSKVVKSMDKMAEYIKLEFIKEIGYTHMRILEGV 323
Query: 436 SEYIQI 441
S +Q+
Sbjct: 324 STIVQL 329
>gi|70985298|ref|XP_748155.1| DNA replication factor C subunit Rfc3 [Aspergillus fumigatus Af293]
gi|66845783|gb|EAL86117.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
fumigatus Af293]
gi|159125922|gb|EDP51038.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
fumigatus A1163]
Length = 396
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 102/216 (47%), Positives = 143/216 (66%), Gaps = 6/216 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV Q++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 45 LPWVEKYRPNTLDDVSGHQDILATINKFIEANRLPHLLLYGPPGTGKTSTILALARRIYG 104
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQ-----QTASGFNQDGKPCPPFKIVILDEA 146
+ R+ +LELNASDDRGI V+R+++KTFA A+ G FK++ILDEA
Sbjct: 105 SNNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAAPSASSGSSLASFKLIILDEA 164
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR ME+ T +TRFC+I NY + L SRC++FRF PL E + + +
Sbjct: 165 DAMTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRSLVD 224
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E + +A+ +LV S GDMRRA+ LQ+C
Sbjct: 225 QVIEKEQIRIQPEAVSSLVRLSKGDMRRALNVLQAC 260
>gi|48477659|ref|YP_023365.1| replication factor C small subunit [Picrophilus torridus DSM 9790]
gi|50400868|sp|Q6L1I0.1|RFCS_PICTO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|48430307|gb|AAT43172.1| replication factor C, small subunit [Picrophilus torridus DSM 9790]
Length = 318
Score = 211 bits (536), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 112/240 (46%), Positives = 149/240 (62%), Gaps = 10/240 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPK +DDVI + E ++ LK + DLPH +F GP GTGKTST IA +LFGD
Sbjct: 5 WTEKYRPKRLDDVIGEDENINTLKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELFGDD 64
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++E LELNASD+RGI +IR+ +K FA+ S N+ G FKI+ LDEAD +T+ AQ
Sbjct: 65 WKENFLELNASDERGIDIIRNNIKDFAKIRPS--NKLG-----FKIIFLDEADQLTNEAQ 117
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTME +TRF CNY S II P+ SRC RF+PL + M +L+ I + E
Sbjct: 118 AALRRTMEMFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPLDKEAMERKLREIAKNEKF 177
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
D +L+ + E S GDMR+AI +Q+ GE I + E++G I K + L+ +
Sbjct: 178 DIDDDSLDAIYEISDGDMRKAINVMQAIQ--STGE-IKPSKIYEISGEINKNEYKNLISL 234
Score = 38.9 bits (89), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 14/128 (10%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV----- 375
+L+ + E S GDMR+AI +Q+ GE I + E++G I + L+ +
Sbjct: 183 SLDAIYEISDGDMRKAINVMQAIQ--STGE-IKPSKIYEISGEINKNEYKNLISLSLNGA 239
Query: 376 --DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQD 433
D+ +L+K + D L S + H + + ++++QK IL LAE R+
Sbjct: 240 FSDAKSLLDKMLVDYGL---SGIDIIRGMHSAIRN-ERIANRQKLEILIALAEFEFRISQ 295
Query: 434 GASEYIQI 441
G S+ +Q+
Sbjct: 296 GGSDNVQM 303
>gi|448408398|ref|ZP_21574193.1| replication factor C small subunit [Halosimplex carlsbadense 2-9-1]
gi|445674253|gb|ELZ26797.1| replication factor C small subunit [Halosimplex carlsbadense 2-9-1]
Length = 327
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/286 (37%), Positives = 168/286 (58%), Gaps = 18/286 (6%)
Query: 23 STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
+ SG + W+EKYRP+T+D+++ Q+++V L+ + DL HF+F GP G GKT++
Sbjct: 6 TDSGSRAGREEVWIEKYRPQTLDEIVGQEDIVERLQSYVDRNDLSHFMFSGPAGIGKTTS 65
Query: 83 MIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
A +L+GD +R+ LELNASD+RGI V+RD++K FA+ + G+ ++I+
Sbjct: 66 ATAIARELYGDDWRDNFLELNASDERGIDVVRDRIKNFARTSFGGY--------EYRIIF 117
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD++T AQ ALRRTME+ + + RF L CNY S II P+ SRC+ FRF PL++ +
Sbjct: 118 LDEADALTSDAQGALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFAPLSDEAVA 177
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
+++I +E + L+ LV + GDMR+AI LQ A + G +V+E+ +
Sbjct: 178 EEMRHIAGEEGIEFTDDGLDALVYAADGDMRKAINALQ-AASVTG--DVVDEEAVYALTS 234
Query: 263 IPKP-----WIEKLLKVDSFQVLEKYIEDLIL-EAYSATQLFDQFH 302
KP +++ L D F ++ L+ E + + DQ H
Sbjct: 235 TAKPEEIKEMVDQALAGD-FTAARSTLDRLLTEEGIAGGDVIDQLH 279
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDS 377
L+ LV + GDMR+AI LQ+ + G+ + E V +T I++++
Sbjct: 195 GLDALVYAADGDMRKAINALQAASVT--GDVVDEEAVYALTSTAKPEEIKEMVDQALAGD 252
Query: 378 FQVLEKYIEDLIL-EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F ++ L+ E + + DQ H V L D+ +L+++ E R+ GA+
Sbjct: 253 FTAARSTLDRLLTEEGIAGGDVIDQLHRSVWEF-DLDDEAAVRLLDRIGETEYRITTGAN 311
Query: 437 EYIQI 441
E IQ+
Sbjct: 312 ERIQL 316
>gi|294657961|ref|XP_002770526.1| DEHA2E22286p [Debaryomyces hansenii CBS767]
gi|199433083|emb|CAR65867.1| DEHA2E22286p [Debaryomyces hansenii CBS767]
Length = 343
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 99/207 (47%), Positives = 146/207 (70%), Gaps = 7/207 (3%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY 95
VEKYRP ++D+V QQ++V ++K + LPH LFYGPPGTGKTST+IA +++G Y
Sbjct: 26 VEKYRPDSLDEVYGQQDIVDTVRKFVHEGKLPHLLFYGPPGTGKTSTIIALAREIYGPNY 85
Query: 96 RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
+ +LELNASDDRGI V+R+++K FA T F++ FK++ILDEAD+MT AQ
Sbjct: 86 KNMVLELNASDDRGIDVVRNQIKNFA-STMQIFSKG------FKLIILDEADAMTSVAQN 138
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
+LRR +EK TK+TRFC++ NY + L SRC++FRF+P+ E+ + RL+ + +E++
Sbjct: 139 SLRRIIEKYTKNTRFCILANYSHKLNPALISRCTRFRFQPIGESAIQERLKNVIIKENLS 198
Query: 216 CDFKALETLVETSGGDMRRAITCLQSC 242
+ +A +TL++ S GDMRRA+ LQ+
Sbjct: 199 INEEAEKTLLKLSNGDMRRALNVLQAV 225
>gi|317036017|ref|XP_001397471.2| replication factor C subunit 3 [Aspergillus niger CBS 513.88]
gi|350633381|gb|EHA21746.1| hypothetical protein ASPNIDRAFT_49138 [Aspergillus niger ATCC 1015]
Length = 396
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 112/250 (44%), Positives = 155/250 (62%), Gaps = 20/250 (8%)
Query: 13 DAPSSSK---TSVSTSGKTR----NKPV------PWVEKYRPKTIDDVIEQQEVVSVLKK 59
D PS S +S +TSGK + + PV PWVEKYRP T++DV Q++++ + K
Sbjct: 11 DVPSKSAIQFSSDNTSGKAKRVAADLPVEAQDNLPWVEKYRPNTLEDVSGHQDILATINK 70
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVK 118
+ LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++K
Sbjct: 71 FVEANRLPHLLLYGPPGTGKTSTILALARRIYGAKNMRQMVLELNASDDRGIDVVREQIK 130
Query: 119 TFAQ------QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172
TFA S + +K++ILDEAD+MT AQ ALRR MEK T +TRFC+
Sbjct: 131 TFASTKQIFSMAPSSTSTSSSTLASYKLIILDEADAMTATAQMALRRIMEKYTANTRFCI 190
Query: 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDM 232
I NY + L SRC++FRF PL E + + + E+E V +A+++LV S GDM
Sbjct: 191 IANYTHKLSPALLSRCTRFRFSPLKEADIRVLVDIVIEKEQVNIQPEAVDSLVRLSKGDM 250
Query: 233 RRAITCLQSC 242
RRA+ LQ+C
Sbjct: 251 RRALNVLQAC 260
>gi|170084297|ref|XP_001873372.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650924|gb|EDR15164.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 341
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 132/328 (40%), Positives = 179/328 (54%), Gaps = 33/328 (10%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
APS+++T +PWVEKYRP +DDV+ + + LK + PH + G
Sbjct: 10 APSAAETPYE---------LPWVEKYRPTVLDDVVGNSDTIERLKVIARDGNCPHIIISG 60
Query: 74 PPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133
PG GKT+++ HQL GD Y+E +LELNASDDRGI V+R+K+KTFAQ+ +
Sbjct: 61 LPGIGKTTSIHCLAHQLLGDAYKEGVLELNASDDRGIDVVRNKIKTFAQKKVT------- 113
Query: 134 PCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
PP KI+ILDEADSMT AQ ALRRTME + +TRFCL CN + II+P+ SRC+
Sbjct: 114 -LPPGRHKIIILDEADSMTPGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAIL 172
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
R+ L + +L RL ICE E V + L L+ TS GDMR+AI LQS G G
Sbjct: 173 RYAKLRDQEILKRLLEICEMEKVEYNDDGLTALIFTSEGDMRQAINNLQSTY---SGFGF 229
Query: 252 VNED-VLEVTG----VIPKPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
V+ D V +V +I + I LK D +EK + L + YSA + +V
Sbjct: 230 VSGDNVFKVCDQPHPIIVQATIRACLKGDIDGAIEK-VNQLWEQGYSAVDIVVTIFRVVK 288
Query: 307 LASSLSDKQKALFKALETLVETSGGDMR 334
+ + + + LE + E MR
Sbjct: 289 IFDEMPE-----YTKLEYIKEIGFTHMR 311
>gi|345560437|gb|EGX43562.1| hypothetical protein AOL_s00215g298 [Arthrobotrys oligospora ATCC
24927]
Length = 393
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 143/220 (65%), Gaps = 10/220 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+++DDV +++++ + K ++ LPH LFYGPPGTGKTST++A +++
Sbjct: 41 LPWVEKYRPQSLDDVSGHEDILTTINKFIAQNKLPHLLFYGPPGTGKTSTILALARRIYN 100
Query: 93 D----MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC------PPFKIVI 142
R +LELNASDDRGI V+R+++KTFA + +P FK++I
Sbjct: 101 TKSEAALRHHVLELNASDDRGIDVVREQIKTFASTKQIFSSAKLEPSNTTSSIAQFKLII 160
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT AQ ALRR MEK T + RFC+I NY + L SRC++FRF PL +
Sbjct: 161 LDEADAMTSTAQNALRRIMEKYTSNVRFCIIANYTHKLNAALLSRCTRFRFSPLPIPALR 220
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
R++++ + E+V D A++ L+ S GDMRRA+ LQ+C
Sbjct: 221 RRVEHVIDSENVRIDDTAVDALLHLSRGDMRRALNVLQAC 260
>gi|71986063|ref|NP_498750.2| Protein F44B9.8 [Caenorhabditis elegans]
gi|55584161|sp|P34429.3|RFC5_CAEEL RecName: Full=Probable replication factor C subunit 5; AltName:
Full=Activator 1 subunit 5
gi|351021183|emb|CCD63451.1| Protein F44B9.8 [Caenorhabditis elegans]
Length = 368
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/280 (40%), Positives = 161/280 (57%), Gaps = 9/280 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +D+++ +++V L K + LPH LFYGPPGTGKT+T++AA Q++
Sbjct: 29 LPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYS 88
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQ----QTASGFNQDGKPCPPFKIVILDEAD 147
+LELNASD+RGI V+R+ + FAQ Q S + G PFK+VILDEAD
Sbjct: 89 PTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTG--TVPFKLVILDEAD 146
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR +EK T + RFC+ICNY++ I+ + SRC++FRF PL + ++ RL+Y
Sbjct: 147 AMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEY 206
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL--KGGEGIVNEDVLEVTGVIPK 265
I E E + + L+ S GDMR I LQS A E V + + + T K
Sbjct: 207 IVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQCIGQPTPKEMK 266
Query: 266 PWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305
++ LL S + + L Y+ + HD V
Sbjct: 267 EVVKTLLNDPSKKCMNTIQTKLFENGYALQDVITHLHDFV 306
>gi|433637069|ref|YP_007282829.1| DNA polymerase III, gamma/tau subunit [Halovivax ruber XH-70]
gi|433288873|gb|AGB14696.1| DNA polymerase III, gamma/tau subunit [Halovivax ruber XH-70]
Length = 329
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 109/283 (38%), Positives = 165/283 (58%), Gaps = 17/283 (6%)
Query: 27 KTRNKPVP---WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
+T + P P W+EKYRP+++DDV + +V L+K + DLPH +F GP G GKT++
Sbjct: 7 ETESSPDPTGIWIEKYRPESLDDVKGHENIVPRLRKYVEQDDLPHLMFAGPAGVGKTASA 66
Query: 84 IAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A +L+G+ +RE LELNASD+RGI V+RD++K FA+ + G ++I+ L
Sbjct: 67 GAIARELYGEDWREHFLELNASDERGIDVVRDRIKNFARSSFGGVK--------YRIIFL 118
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L++ +
Sbjct: 119 DEADALTSDAQSALRRTMEQFSHNTRFILSCNYSSQIIDPIQSRCAVFRFTELSDEAIEA 178
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
+ + I E E + ++ LV + GDMR+AI LQ+ A + GE + V +T
Sbjct: 179 QTREIAETEGISLTDDGVDALVYAAAGDMRKAINGLQAAAVM--GEEVDEAAVFAITSTA 236
Query: 264 PKPWIEKLLKV---DSFQVLEKYIEDLILE-AYSATQLFDQFH 302
+EK++ F +EDL+ + + + DQ H
Sbjct: 237 RPEEVEKMVDQAIGGDFTAARATLEDLLTDRGLAGGDVIDQLH 279
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
++ LV + GDMR+AI LQ+ A + GE + V +T +EK++
Sbjct: 195 GVDALVYAAAGDMRKAINGLQAAAVM--GEEVDEAAVFAITSTARPEEVEKMVDQAIGGD 252
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F +EDL+ + + + DQ H L + + +LE+L E + R+ +GA+
Sbjct: 253 FTAARATLEDLLTDRGLAGGDVIDQLHRSAWE-FDLGEHETVRLLERLGEVDYRITEGAN 311
Query: 437 EYIQI 441
E +Q+
Sbjct: 312 ERLQL 316
>gi|389625115|ref|XP_003710211.1| replication factor C subunit 3 [Magnaporthe oryzae 70-15]
gi|351649740|gb|EHA57599.1| replication factor C subunit 3 [Magnaporthe oryzae 70-15]
gi|440464833|gb|ELQ34198.1| replication factor C subunit 3 [Magnaporthe oryzae Y34]
Length = 404
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 144/229 (62%), Gaps = 19/229 (8%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++ DV Q++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 44 LPWVEKYRPVSLADVSGHQDILATVNKFVDANRLPHLLLYGPPGTGKTSTILALARRIYG 103
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQ------------------QTASGFNQDGK 133
D R+ +LELNASDDRGI V+R+++KTFA + S +
Sbjct: 104 ADNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGSTKPAAASSSASTSNNPSATR 163
Query: 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
P P +K++ILDEAD+MT+ AQ ALRR MEK T +TRFC+I NY + L SRC++FRF
Sbjct: 164 PTPSYKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCTRFRF 223
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
PL E + + + E+E+V A++ LV + GDMRRA+ LQ+C
Sbjct: 224 SPLKEADIRVLVDRVVEEETVNIRPDAVDALVRLARGDMRRALNVLQAC 272
>gi|448633051|ref|ZP_21674049.1| replication factor C small subunit [Haloarcula vallismortis ATCC
29715]
gi|445752408|gb|EMA03832.1| replication factor C small subunit [Haloarcula vallismortis ATCC
29715]
Length = 325
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 98/209 (46%), Positives = 137/209 (65%), Gaps = 8/209 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DDV+ + +V LK +S DL H LF GP GTGKT+ A +L+GD
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI V+RD++K FA+ + G ++I+ LDEAD++T AQ
Sbjct: 76 WREHFLELNASDERGIDVVRDRIKNFARTSFGGV--------EYRIIFLDEADALTSDAQ 127
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + + RF L CNY S II P+ SRC+ FRF PLA++ + ++ I QE +
Sbjct: 128 SALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAQEDI 187
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCA 243
L+ LV + GDMR+AI LQ+ +
Sbjct: 188 ELTEDGLDALVYAADGDMRKAINGLQAAS 216
Score = 38.1 bits (87), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDSF 378
L+ LV + GDMR+AI LQ+ + G+ + V +T I +++ +D
Sbjct: 193 GLDALVYAADGDMRKAINGLQAAS--VSGDTVDESAVYAITSTARPEEIRTMVQSALDGD 250
Query: 379 QVLEKYIEDLIL--EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+ D +L E + + DQ H + + D+ +LE++ E + R+ GA+
Sbjct: 251 FTASRATLDRLLTEEGIAGGDVIDQLHRSIWEF-DIDDEAAVRVLERIGETDYRITRGAN 309
Query: 437 EYIQI 441
E +Q+
Sbjct: 310 ERVQL 314
>gi|297842523|ref|XP_002889143.1| hypothetical protein ARALYDRAFT_476911 [Arabidopsis lyrata subsp.
lyrata]
gi|297334984|gb|EFH65402.1| hypothetical protein ARALYDRAFT_476911 [Arabidopsis lyrata subsp.
lyrata]
Length = 369
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 139/213 (65%), Gaps = 5/213 (2%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
++K PWVEKYRP+++DDV ++++ + + + LPH L YGPPGTGKTST++A
Sbjct: 35 QSKATPWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVAR 94
Query: 89 QLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADS 148
+L+G YR ILELNASDDRGI V+R +++ FA + + K+V+LDEAD+
Sbjct: 95 KLYGPKYRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSS-----VKLVLLDEADA 149
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR +EK TKSTRF LI N+V+ II L SRC++FRF PL + RL+++
Sbjct: 150 MTKDAQFALRRVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDPLHVSQRLKHV 209
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
E E + L LV S GDMR+A+ LQS
Sbjct: 210 IEAEGLGVSDCGLAALVRLSNGDMRKALNILQS 242
>gi|380489807|emb|CCF36452.1| replication factor C [Colletotrichum higginsianum]
Length = 392
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 109/248 (43%), Positives = 151/248 (60%), Gaps = 18/248 (7%)
Query: 13 DAPSSSKTSVSTSGK-----TRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCL 61
D P S + S+ K N PV PWVEKYRP ++ DV Q++++ + K +
Sbjct: 11 DVPVSKDITFSSDAKQGKRSAANLPVEAEDSLPWVEKYRPVSLADVSGHQDILATINKFV 70
Query: 62 SGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTF 120
LPH L YGPPGTGKTST++A +++G + R+ +LELNASDDRGI V+R+++KTF
Sbjct: 71 DSNRLPHLLLYGPPGTGKTSTILALARRIYGAENMRQMVLELNASDDRGIDVVREQIKTF 130
Query: 121 AQQT------ASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
A S + G +K++ILDEAD+MT+ AQ ALRR MEK T +TRFC+I
Sbjct: 131 ASTKQIFTLGPSAKSGGGGSMASYKLIILDEADAMTNTAQMALRRIMEKYTVNTRFCIIA 190
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NY + L SRC++FRF PL E + + + E+E V +A + LV+ S GDMRR
Sbjct: 191 NYSHKLSPALLSRCTRFRFSPLKERDIRVLVDKVVEEEHVKILPEATDALVKLSKGDMRR 250
Query: 235 AITCLQSC 242
A+ LQ+C
Sbjct: 251 ALNVLQAC 258
>gi|426201141|gb|EKV51064.1| hypothetical protein AGABI2DRAFT_189375 [Agaricus bisporus var.
bisporus H97]
Length = 341
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/289 (42%), Positives = 166/289 (57%), Gaps = 19/289 (6%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
+S + + + T +PWVEKYRPK +DDV+ + + LK + PH + G P
Sbjct: 3 TSKGKATNGNAATDAYELPWVEKYRPKVLDDVVGNSDTIERLKVIARDGNCPHLIISGLP 62
Query: 76 GTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
G GKT+++ HQL GD Y+E +LELNASD+RGI+V+R K+K FAQ+ +
Sbjct: 63 GIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIEVVRTKIKQFAQKKVT--------L 114
Query: 136 PP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
PP KIVILDEADSMT AQ ALRRTME + +TRFCL CN + II+P+ SRC+ R+
Sbjct: 115 PPGRHKIVILDEADSMTPGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRY 174
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253
L + +L RL ICE+E V + L L+ TS GDMR+AI LQS G G V+
Sbjct: 175 AKLRDQEILKRLLEICEEEDVKYNDDGLTALIFTSEGDMRQAINNLQSTF---SGFGFVS 231
Query: 254 EDVLEVTGVIPKPW-----IEKLLKVDSFQVLEKYIEDLILEAYSATQL 297
D + P P I LK D + L K I++L + YSA +
Sbjct: 232 GDNVFKICDQPHPIVVQAAIRSCLKGDVDEALGK-IKELWDQGYSAVDI 279
Score = 38.5 bits (88), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 9/137 (6%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-----IEKLLKV 375
L L+ TS GDMR+AI LQS G G V+ D + P+P I LK
Sbjct: 201 GLTALIFTSEGDMRQAINNLQSTF---SGFGFVSGDNVFKICDQPHPIVVQAAIRSCLKG 257
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
D + L K I++L + YSA + +V + + + K ++++ + R+ +G
Sbjct: 258 DVDEALGK-IKELWDQGYSAVDIVVTLFRVVKTFDEVPEYTKLEFIKEIGFTHMRILEGV 316
Query: 436 SEYIQILDLGSIVIKAN 452
+Q+ L + + K N
Sbjct: 317 GTLVQLAGLVARLCKMN 333
>gi|448304145|ref|ZP_21494089.1| replication factor C small subunit [Natronorubrum sulfidifaciens
JCM 14089]
gi|445591898|gb|ELY46094.1| replication factor C small subunit [Natronorubrum sulfidifaciens
JCM 14089]
Length = 329
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 168/289 (58%), Gaps = 14/289 (4%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
S+ + T K W+EKYRP+ +D++ + +V L++ + DLPH +F GP GT
Sbjct: 2 SEADAEAAEPTPGKTEVWIEKYRPERLDEIKGHENIVPRLQRYIEQDDLPHLMFAGPAGT 61
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKT+ + +++ D +RE LELNASD RGI V+RD++K FA+ + G++
Sbjct: 62 GKTTAAQSIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYDH------- 114
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L+
Sbjct: 115 -RIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELS 173
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
E+ + +++ I E E + ++ LV + GDMR+AI LQ+ A + GE + E V
Sbjct: 174 EDAIEAQIREIAEIEGITVTDDGIDALVYAADGDMRKAINALQAAAVM--GETVDEETVF 231
Query: 258 EVTGVIPKPWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFH 302
+T +E ++ +D F +EDL++E + + DQ H
Sbjct: 232 AITSTARPEEVEAMVDHAIDGDFTAARAALEDLLMERGLAGGDVIDQLH 280
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 11/127 (8%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDS- 377
++ LV + GDMR+AI LQ+ A + GE + E V +T +E ++ +D
Sbjct: 196 GIDALVYAADGDMRKAINALQAAAVM--GETVDEETVFAITSTARPEEVEAMVDHAIDGD 253
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALI--LEKLAECNARLQDG 434
F +EDL++E + + DQ H SA ++A + LE+L E + R+ +G
Sbjct: 254 FTAARAALEDLLMERGLAGGDVIDQLH---RSAWEFDIPEQATVRLLERLGEVDYRITEG 310
Query: 435 ASEYIQI 441
A+E +Q+
Sbjct: 311 ANERLQL 317
>gi|84996647|ref|XP_953045.1| replication factor C subunit [Theileria annulata strain Ankara]
gi|65304041|emb|CAI76420.1| replication factor C subunit, putative [Theileria annulata]
Length = 347
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/246 (42%), Positives = 152/246 (61%), Gaps = 6/246 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+ D+I ++++S L LPH LF+GPPG+GKTST++A ++G+
Sbjct: 8 PWVEKYRPETLQDIISHEDIMSTLMVFAEKGQLPHLLFHGPPGSGKTSTILAISRYMYGN 67
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQT---ASGFNQDGKPCPPFKIVILDEADSMT 150
+LELNASD+RGI +RD++K F++ + S + P K++ILDEAD MT
Sbjct: 68 SRNGFVLELNASDERGIDTVRDQIKAFSETSNTFTSSIPVEDPPRTNLKLIILDEADQMT 127
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
+AAQ ALRR ME + + RFCLICN+++ II P+ SRC+ FRF+PL + + R + I +
Sbjct: 128 NAAQNALRRIMEIYSNNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKPDVVRERTKEIAK 187
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED---VLEVTGVIPKPW 267
E+V AL+ LVE GDMRR + CLQ + + D +L +G+
Sbjct: 188 LENVKITDCALDALVEIGQGDMRRVLNCLQVTSMSHSSKTDFTVDANLILSTSGLPQSSE 247
Query: 268 IEKLLK 273
I+ LLK
Sbjct: 248 IDHLLK 253
>gi|115443244|ref|XP_001218429.1| activator 1 subunit 3 [Aspergillus terreus NIH2624]
gi|114188298|gb|EAU29998.1| activator 1 subunit 3 [Aspergillus terreus NIH2624]
Length = 398
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 106/249 (42%), Positives = 150/249 (60%), Gaps = 19/249 (7%)
Query: 13 DAPSSSKTSVST--SGKTRNKP-----------VPWVEKYRPKTIDDVIEQQEVVSVLKK 59
D PS S+ +GK +P +PWVEKYRP T+DDV Q++++ + +
Sbjct: 11 DVPSKGDVQFSSDNAGKKAKRPAADLPVEAQDNLPWVEKYRPNTLDDVSGHQDILATINR 70
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVK 118
+ LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++K
Sbjct: 71 FIEANRLPHLLLYGPPGTGKTSTILALARKIYGSKNMRQMVLELNASDDRGIDVVREQIK 130
Query: 119 TFAQ-----QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLI 173
TFA FK++ILDEAD+MT AQ ALRR ME+ T +TRFC+I
Sbjct: 131 TFASTKQIFSMGPQSGSGSSSLASFKLIILDEADAMTSTAQMALRRIMERYTANTRFCII 190
Query: 174 CNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMR 233
NY + L SRC++FRF PL E + + + + E+E + +A+++LV S GDMR
Sbjct: 191 ANYTHKLSPALLSRCTRFRFSPLKEPDIRSLVDLVVEKEQINIQPEAVDSLVTLSKGDMR 250
Query: 234 RAITCLQSC 242
RA+ LQ+C
Sbjct: 251 RALNVLQAC 259
>gi|282164500|ref|YP_003356885.1| replication factor C small subunit [Methanocella paludicola SANAE]
gi|282156814|dbj|BAI61902.1| replication factor C small subunit [Methanocella paludicola SANAE]
Length = 332
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 182/323 (56%), Gaps = 21/323 (6%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPKT+D+VI Q+++V LK + +LPH LF GPPG GKT+ +A +FGD
Sbjct: 17 WTEKYRPKTLDEVIGQEQIVRRLKSYVKTGNLPHLLFSGPPGVGKTACAVALAKDMFGDT 76
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++ ELNASD+RGI V+R+ +K FA+ G D + FKI+ LDEAD++T AQ
Sbjct: 77 WQNNFTELNASDERGIDVVRNNIKNFARTAPLG---DAR----FKIIFLDEADALTSDAQ 129
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ T + RF + CNY S II+P+ SRC+ +RF PL + T + I + E +
Sbjct: 130 SALRRTMERYTATCRFIISCNYSSKIIEPIQSRCAVYRFGPLGPKDIETMARRIEKGEGI 189
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
L+ ++ + GDMRRA+ LQS + + + I E V E T IE++LK+
Sbjct: 190 KITKDGLDAIIYVARGDMRRAVNALQSASTVS--KDITAEAVYETTSTARPKEIEEMLKL 247
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVE--- 327
F ++DL+++ S + + DQ + + SL + L ++ + E
Sbjct: 248 ALNGQFMDSRNKLDDLLIKYGLSGSDIIDQIYASMF---SLGLDEDVLVALVDRIGEADF 304
Query: 328 --TSGGDMRRAITCLQSCARLKG 348
T GG+ R + L + ++ G
Sbjct: 305 RLTEGGNERIQVEALLAHFKMHG 327
>gi|451999620|gb|EMD92082.1| hypothetical protein COCHEDRAFT_1193657 [Cochliobolus
heterostrophus C5]
Length = 392
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 100/214 (46%), Positives = 144/214 (67%), Gaps = 4/214 (1%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DDV +++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 42 LPWVEKYRPASLDDVEGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYG 101
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA--QQTASGFNQDGKPC-PPFKIVILDEADS 148
+ R+ +LELNASDDRGI+V+R+++KTF+ +Q S + G FK+++LDEAD+
Sbjct: 102 NKNMRQMVLELNASDDRGIEVVREQIKTFSSTKQIFSAAPKAGDSSLATFKLIVLDEADA 161
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL + + + +
Sbjct: 162 MTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRHLVDKV 221
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
E+E V A ++LV S GDMRRA+ LQ+C
Sbjct: 222 IEEEKVNITQDATDSLVTLSKGDMRRALNVLQAC 255
>gi|294873159|ref|XP_002766534.1| replication factor C3, putative [Perkinsus marinus ATCC 50983]
gi|239867474|gb|EEQ99251.1| replication factor C3, putative [Perkinsus marinus ATCC 50983]
Length = 354
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/295 (39%), Positives = 167/295 (56%), Gaps = 7/295 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPKT+DD++ QE++ +K+ + LPH L +GPPGTGKTST++A Q++
Sbjct: 28 LPWVEKYRPKTLDDLVAHQEIIETIKRFVKMNALPHLLLHGPPGTGKTSTILACARQMYP 87
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
R+ +LELNASD RGI V+R+ +K F + G P K+VILDEAD+MT
Sbjct: 88 PGQLRQYVLELNASDARGIDVVRECIKQFVSSRSMFSGSLGTNMP--KLVILDEADNMTS 145
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
+Q ALRR +E+ + + RFCLICNY S II L SRC+KFRF PL + R+ Y+ +
Sbjct: 146 VSQFALRRVIEQYSSNARFCLICNYASKIIPALQSRCTKFRFAPLKDAEARMRVDYVAKC 205
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL 271
E V + L+ T GDMR+ + LQSC + + +V G+ I++L
Sbjct: 206 EGVKISEDGMLALLRTGEGDMRKVLNTLQSCTLSYPSHTVDANIIHKVAGLPETSTIDRL 265
Query: 272 LKVDSFQVLEK---YIEDL-ILEAYSATQLFDQFHDIVMLASSLSDKQKALFKAL 322
V + L + IE+L + YS L + HD ++ + LF+ L
Sbjct: 266 EAVLCQKPLREGMMVIEELRVKHGYSVADLLREIHDRMVTVDMPPRARNLLFRDL 320
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEK- 383
L+ T GDMR+ + LQSC + + +V G+ I++L V + L +
Sbjct: 218 LLRTGEGDMRKVLNTLQSCTLSYPSHTVDANIIHKVAGLPETSTIDRLEAVLCQKPLREG 277
Query: 384 --YIEDL-ILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQ 440
IE+L + YS L + HD +++ + + + L+ LAE RL G SE +Q
Sbjct: 278 MMVIEELRVKHGYSVADLLREIHDRMVTV-DMPPRARNLLFRDLAEIEYRLSSGCSEKVQ 336
>gi|308479944|ref|XP_003102180.1| hypothetical protein CRE_06764 [Caenorhabditis remanei]
gi|308262335|gb|EFP06288.1| hypothetical protein CRE_06764 [Caenorhabditis remanei]
Length = 365
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 106/230 (46%), Positives = 144/230 (62%), Gaps = 15/230 (6%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTS 81
VST N +PWVEKYRP +D+++ ++VV L K + LPH LFYGPPGTGKT+
Sbjct: 2 VSTPAVVSN--LPWVEKYRPSKLDELVAHEQVVKTLTKFIENRTLPHLLFYGPPGTGKTT 59
Query: 82 TMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQ-------TASGFNQDGK 133
T++AA +++ +LELNASD+RGI V+R+ + FAQ TAS +Q
Sbjct: 60 TVLAAARKMYSPARMSSMVLELNASDERGIDVVRNTIVNFAQTKGLQSYATASSSDQ--- 116
Query: 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
PFK+VILDEAD+MT AQ ALRR +EK T + RFC+ICNY++ II + SRC++FRF
Sbjct: 117 --VPFKMVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRF 174
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
PL + ++ RL +I E++ + L+ S GDMR I LQS A
Sbjct: 175 APLDQKLIVPRLDFIVNSENIKMTSDGRQALLTVSNGDMRTVINTLQSTA 224
>gi|336258765|ref|XP_003344190.1| hypothetical protein SMAC_08123 [Sordaria macrospora k-hell]
gi|380095124|emb|CCC07626.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 389
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 132/358 (36%), Positives = 191/358 (53%), Gaps = 53/358 (14%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++ DV Q++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 43 LPWVEKYRPVSLADVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYG 102
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPCPPFKIVILDEADS 148
R+ +LELNASDDRGI V+R+++KTFA Q G + FK++ILDEAD+
Sbjct: 103 TANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGSSASRSGLAGFKLIILDEADA 162
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + + +
Sbjct: 163 MTSTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEKDIRVLVDKV 222
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWI 268
E+E+V A + LV+ S GDMRRA+ LQ+C T + PK
Sbjct: 223 IEEENVQIMPDATDALVKLSKGDMRRALNVLQACHA-------------SSTPLQPK--- 266
Query: 269 EKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVET 328
D +V EK D++ E + +++ +A+ D A+ K L TL+ T
Sbjct: 267 ------DGPKVAEK---DIVRETITIQTIYN------CVAAPPPD---AIKKILSTLLST 308
Query: 329 SGGDMRRAITCLQSCARLKGGEGIVNEDV----------LEVTGVIPNPWIEKLLKVD 376
S TCL + LK +G+ D+ LEV + W++ L ++
Sbjct: 309 SD-----VTTCLSTINTLKISQGLALADIITALSEEIVKLEVKPQVMITWLDALANIE 361
>gi|242019775|ref|XP_002430334.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212515458|gb|EEB17596.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 340
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/265 (43%), Positives = 161/265 (60%), Gaps = 18/265 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+ +DD+I Q +V+ ++K +S LPH LFYGPPGTGKT+T++A L+
Sbjct: 13 MPWVEKYRPQKLDDLISQDYIVNTIRKLISHKQLPHLLFYGPPGTGKTTTILACAKVLYT 72
Query: 93 D-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
+ +LELNASDDRGI +R + FA T + F Q G K++ILDEAD+MTH
Sbjct: 73 PAQFASMVLELNASDDRGIGTVRGAILDFAS-TKTMF-QGG-----VKLIILDEADAMTH 125
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR MEK T + RFC+ICNY+ II + SRC+KFRF PL +L RL+Y+ EQ
Sbjct: 126 DAQNALRRIMEKYTANVRFCIICNYLGKIIPAIQSRCTKFRFAPLDSKEILPRLEYVIEQ 185
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKL 271
E + + ++ GDMR+ + LQS + E VNE+ V + P
Sbjct: 186 EKIKISDDGKQAVLTLGQGDMRKVLNILQS-TFVSFSE--VNEE--NVYTCVGHP----- 235
Query: 272 LKVDSFQVLEKYIEDLILEAYSATQ 296
L+ D F++L+ + D + ++Y Q
Sbjct: 236 LQCDIFEMLQSLLNDNLSDSYKKIQ 260
>gi|448388975|ref|ZP_21565470.1| replication factor C small subunit [Haloterrigena salina JCM 13891]
gi|445669262|gb|ELZ21874.1| replication factor C small subunit [Haloterrigena salina JCM 13891]
Length = 330
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/281 (38%), Positives = 166/281 (59%), Gaps = 19/281 (6%)
Query: 31 KPVP-----WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIA 85
+P P W+EKYRP+ +D++ + +V L++ + DLPH +F GP GTGKT+ A
Sbjct: 10 EPTPGRTEVWIEKYRPERLDEIKGHENIVPRLQRYVERDDLPHLMFAGPAGTGKTTAAQA 69
Query: 86 ACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145
+++ D +RE LELNASD RGI V+RD++K FA+ + G++ +I+ LDE
Sbjct: 70 IAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYDH--------RIIFLDE 121
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L E+ + ++
Sbjct: 122 ADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQV 181
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPK 265
+ I E E + ++ LV + GDMR+AI LQ+ A + GE + E V +T
Sbjct: 182 REIAENEGIEVTDDGVDALVYAADGDMRKAINGLQAAAVM--GETVDEETVFAITATARP 239
Query: 266 PWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFH 302
+E++++ +D F +EDL+ E + + DQ H
Sbjct: 240 EEVEEMVEHAIDGDFTAARAALEDLLTERGLAGGDVIDQLH 280
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 11/127 (8%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDS- 377
++ LV + GDMR+AI LQ+ A + GE + E V +T +E++++ +D
Sbjct: 196 GVDALVYAADGDMRKAINGLQAAAVM--GETVDEETVFAITATARPEEVEEMVEHAIDGD 253
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALI--LEKLAECNARLQDG 434
F +EDL+ E + + DQ H SA + A + LE+L E + R+ +G
Sbjct: 254 FTAARAALEDLLTERGLAGGDVIDQLH---RSAWEFDIPELATVRLLERLGEVDYRITEG 310
Query: 435 ASEYIQI 441
A+E +Q+
Sbjct: 311 ANERLQL 317
>gi|345484012|ref|XP_001599543.2| PREDICTED: replication factor C subunit 5-like [Nasonia
vitripennis]
Length = 285
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 140/210 (66%), Gaps = 8/210 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD+I +E++ + K + LPH L YGPPGTGKTST++A +L+
Sbjct: 12 LPWVEKYRPSKLDDLISHEEIIQTINKFIDENQLPHLLLYGPPGTGKTSTILACAKKLYT 71
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
+ +LELNASDDRGI ++R ++ +FA T + + +K++ILDEAD+MT+
Sbjct: 72 PQQFNSMVLELNASDDRGIGIVRGQILSFAS-TGTMYRSG------YKLIILDEADAMTN 124
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T + RFC+ICNY+S II L SRC+KFRF PLA +L RL+++ +
Sbjct: 125 DAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLAPEQILPRLEHVITE 184
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQS 241
E+V + L+ SGGDMR+ I LQS
Sbjct: 185 ENVTVTEDGKKALMTLSGGDMRKVINVLQS 214
>gi|257052996|ref|YP_003130829.1| replication factor C small subunit [Halorhabdus utahensis DSM
12940]
gi|256691759|gb|ACV12096.1| Replication factor C [Halorhabdus utahensis DSM 12940]
Length = 326
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 106/275 (38%), Positives = 163/275 (59%), Gaps = 14/275 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T++D+ + +V L +S DL H LF GP G GKT+ A +L+G+
Sbjct: 15 WIEKYRPQTLEDIAGHEAIVERLGSYVSRNDLSHMLFAGPAGVGKTTAATAIARELYGED 74
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+ E LELNASD+RGI V+RD+VK+FA+ + G++ ++I+ LDEAD++T AQ
Sbjct: 75 WEENFLELNASDERGIDVVRDRVKSFARTSFGGYD--------YRIIFLDEADALTADAQ 126
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + + RF L CNY S II P+ SRC+ FRF PLA+ + +++ I ++E +
Sbjct: 127 SALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADEAVEAQIRQIAQEEVI 186
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
+E LV +GGDMR+AI LQ+ + G+ + E V E+T I +++ +
Sbjct: 187 DVTEDGIEALVYVAGGDMRKAINGLQAAS--MSGDTVNEEAVFEITSTARPEDIREMVDL 244
Query: 275 ---DSFQVLEKYIEDLIL-EAYSATQLFDQFHDIV 305
F ++ L+ E + + DQ H V
Sbjct: 245 ALDGDFTAARSRLDTLLTEEGIAGGDIIDQLHRTV 279
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
+E LV +GGDMR+AI LQ+ + G+ + E V E+T I +++ +
Sbjct: 192 GIEALVYVAGGDMRKAINGLQAAS--MSGDTVNEEAVFEITSTARPEDIREMVDLALDGD 249
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F ++ L+ E + + DQ H V LSD +L+++ E + R+ +GAS
Sbjct: 250 FTAARSRLDTLLTEEGIAGGDIIDQLHRTVWE-FDLSDAAAVRVLDRVGEADYRITEGAS 308
Query: 437 EYIQ 440
E IQ
Sbjct: 309 ERIQ 312
>gi|363750179|ref|XP_003645307.1| hypothetical protein Ecym_2792 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888940|gb|AET38490.1| Hypothetical protein Ecym_2792 [Eremothecium cymbalariae
DBVPG#7215]
Length = 319
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 113/269 (42%), Positives = 161/269 (59%), Gaps = 14/269 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+ + D++ +E+V L++ ++PH + G PG GKT+++ H+L G
Sbjct: 9 LPWVEKYRPQLLKDIVGNEEIVERLQQIAYDGNMPHMIISGLPGIGKTTSIHCIAHELLG 68
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
D Y + +LELNASDDRGI V+R+++K FAQ+ + PP KI+ILDEADSMT
Sbjct: 69 DSYSQAVLELNASDDRGIDVVRNQIKQFAQKKCT--------LPPGKHKIIILDEADSMT 120
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME + STRF CN + II+PL SRC+ R+ L++ +L RL I +
Sbjct: 121 SGAQQALRRTMEIYSSSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEIIK 180
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW-IE 269
E V LE ++ T+ GDMR+AI LQS G G+VN D + P P ++
Sbjct: 181 LEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGFGLVNGDNVFKIVDSPHPLVVK 237
Query: 270 KLLKVDSFQVLEKYIEDLILEAYSATQLF 298
K+L +S Y++DL + YSA +
Sbjct: 238 KMLLANSLDESLTYLKDLWNKGYSAVDII 266
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWI-EKLLKVDSFQ 379
LE ++ T+ GDMR+AI LQS G G+VN D + P+P + +K+L +S
Sbjct: 190 GLEAIIFTAEGDMRQAINNLQSTV---AGFGLVNGDNVFKIVDSPHPLVVKKMLLANSLD 246
Query: 380 VLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYI 439
Y++DL + YSA + ++ + + + + + I++++ + R+ +G Y+
Sbjct: 247 ESLTYLKDLWNKGYSAVDIITTCFRVMKNLAEIKEHIRLEIIKEIGFTHMRILEGVGTYL 306
Query: 440 QI 441
Q+
Sbjct: 307 QL 308
>gi|429191613|ref|YP_007177291.1| DNA polymerase III, subunit gamma/tau [Natronobacterium gregoryi
SP2]
gi|448325250|ref|ZP_21514645.1| replication factor C small subunit [Natronobacterium gregoryi SP2]
gi|429135831|gb|AFZ72842.1| DNA polymerase III, gamma/tau subunit [Natronobacterium gregoryi
SP2]
gi|445616034|gb|ELY69670.1| replication factor C small subunit [Natronobacterium gregoryi SP2]
Length = 330
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/289 (37%), Positives = 171/289 (59%), Gaps = 14/289 (4%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
S+ + T K W+EKYRP+ +D++ + +V LK+ + DLPH +F GP G
Sbjct: 2 SEADAEAAEPTPGKTEVWIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGV 61
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKT++ A +++GD ++E LELNASD RGI V+RD++K FA+ + G++
Sbjct: 62 GKTASAQAIAREVYGDDWKENFLELNASDQRGIDVVRDRIKDFARSSFGGYDH------- 114
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L
Sbjct: 115 -RIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELG 173
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
++ + T+++ I E++ ++ LV + GDMR+AI LQ+ A + GE + E V
Sbjct: 174 DDAVETQIREIAATETIELTDNGVDALVYAADGDMRKAINGLQAAAVM--GEVVDEETVF 231
Query: 258 EVTGVIPKPWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFH 302
+T +E++++ +D F +EDL+++ + + DQ H
Sbjct: 232 AITSTARPEEVEEMVEHAIDGDFTAARAALEDLLMDRGLAGGDVIDQLH 280
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 67/128 (52%), Gaps = 11/128 (8%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDS 377
++ LV + GDMR+AI LQ+ A + GE + E V +T +E++++ +D
Sbjct: 195 NGVDALVYAADGDMRKAINGLQAAAVM--GEVVDEETVFAITSTARPEEVEEMVEHAIDG 252
Query: 378 -FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALI--LEKLAECNARLQD 433
F +EDL+++ + + DQ H SA ++A + LE+L E + R+ +
Sbjct: 253 DFTAARAALEDLLMDRGLAGGDVIDQLH---RSAWEFDIPERATVRLLERLGEVDYRITE 309
Query: 434 GASEYIQI 441
GA+E +Q+
Sbjct: 310 GANERLQL 317
>gi|311977902|ref|YP_003987022.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|82050828|sp|Q5UQ72.1|RFCS4_MIMIV RecName: Full=Putative replication factor C small subunit L510;
Short=RFC small subunit L510; AltName: Full=Clamp loader
small subunit L510
gi|55417124|gb|AAV50774.1| putative replication factor C subunit [Acanthamoeba polyphaga
mimivirus]
gi|308204876|gb|ADO18677.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|339061447|gb|AEJ34751.1| putative replication factor C subunit [Acanthamoeba polyphaga
mimivirus]
gi|351737669|gb|AEQ60704.1| putative replication factor C small subunit [Acanthamoeba
castellanii mamavirus]
gi|398257335|gb|EJN40943.1| putative replication factor C subunit [Acanthamoeba polyphaga
lentillevirus]
Length = 363
Score = 209 bits (532), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 141/213 (66%), Gaps = 1/213 (0%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
++ VPW+EKYRPK ++D+ + Q ++ + K ++ HFLFYGPPGTGKTS ++A +
Sbjct: 4 DESVPWIEKYRPKKLEDITQSQNLLDLFKNSTKKGEMTHFLFYGPPGTGKTSAILAMGRE 63
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN-QDGKPCPPFKIVILDEADS 148
+F + ++ R++E NASDDRGI +R+K+ A++ + +DG P +KI+ILDEADS
Sbjct: 64 IFKEHFQNRVIEFNASDDRGINAVREKITNEAKKYVAEIKLEDGTIIPSYKIIILDEADS 123
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALR +E+ + +TRFC ICNY++ I + SRCS FK L++ M+ +L I
Sbjct: 124 MTDEAQDALRVIIEQYSTATRFCFICNYITKITDAIKSRCSSVYFKKLSDECMVEKLNDI 183
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
+ES+ L T+++ S GDMR+AI LQ+
Sbjct: 184 SLKESMELPKNILHTIIDVSNGDMRKAIMLLQN 216
>gi|66359384|ref|XP_626870.1| replication factor RFC3 AAA+ ATpase [Cryptosporidium parvum Iowa
II]
gi|46228358|gb|EAK89257.1| replication factor RFC3 AAA+ ATpase [Cryptosporidium parvum Iowa
II]
Length = 383
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 164/293 (55%), Gaps = 31/293 (10%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP + D++ +++++ ++K +S LPH LF+GPPGTGKTST+ A ++
Sbjct: 12 LPWVEKYRPSGLQDLLSHKDIINTIEKFISSGQLPHLLFHGPPGTGKTSTIHAISKCIYK 71
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP------------------ 134
D + +LELNASDDRGI V+RD +K+F++ ++ N G
Sbjct: 72 DRKYQMVLELNASDDRGINVVRDAIKSFSESASTTLNHSGGTNSNIEDIEMSDVSTRNLD 131
Query: 135 -----CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189
C K++ILDEAD MT AQ ALRR ME+ ++ RFC+ICNYV+ I L SRC+
Sbjct: 132 CNKSLCENIKLIILDEADMMTSTAQMALRRIMERYSEHVRFCIICNYVNKITPALQSRCT 191
Query: 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249
+FRF PL + R+ I E + + E+L+++S GDMR+ + LQSC+ G
Sbjct: 192 RFRFSPLPIEDIRNRISEIALSERIFITREGQESLIKSSRGDMRKVLNVLQSCSMSNYGN 251
Query: 250 GIVNEDVLEVTGV--------IPKPWIEKLLKVDSFQVLEKYIEDLILEAYSA 294
++D E+ G I + I ++L + + L+ L E++S+
Sbjct: 252 IEKHKDSGELNGASIEGLITYINEEMIHRILGIPTKSELDYIFGILSRESFSS 304
Score = 42.0 bits (97), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 25/143 (17%)
Query: 323 ETLVETSGGDMRRAITCLQSCA--------------RLKGG--EGI---VNEDVLEVTGV 363
E+L+++S GDMR+ + LQSC+ L G EG+ +NE+++
Sbjct: 224 ESLIKSSRGDMRKVLNVLQSCSMSNYGNIEKHKDSGELNGASIEGLITYINEEMIHRILG 283
Query: 364 IPNP----WIEKLLKVDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKA 418
IP +I +L +SF +++ E YS + + M A + D+
Sbjct: 284 IPTKSELDYIFGILSRESFSSGFSALQNSQNENGYSTQDFVNGLYSKSMEA-NWPDEVVP 342
Query: 419 LILEKLAECNARLQDGASEYIQI 441
L++ +LA+ RL GASE IQ+
Sbjct: 343 LLMRRLADIEYRLSRGASESIQL 365
>gi|268576128|ref|XP_002643044.1| Hypothetical protein CBG22959 [Caenorhabditis briggsae]
Length = 353
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 112/280 (40%), Positives = 162/280 (57%), Gaps = 11/280 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +++++ ++VV L K + LPH LFYGPPGTGKT+T++AA +++
Sbjct: 11 LPWVEKYRPSKLNELVAHEQVVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARKMYH 70
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQT-----ASGFNQDGKPCPPFKIVILDEA 146
+LELNASD+RGI V+R+ + FAQ AS ++D P FK+VILDEA
Sbjct: 71 PSKMSSMVLELNASDERGIDVVRNTIVNFAQTKGLQAFASASDKDSVP---FKLVILDEA 127
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T + RFC+ICNY++ II + SRC++FRF PL ++ ++ RL
Sbjct: 128 DAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPLDQSLIVPRLD 187
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL--KGGEGIVNEDVLEVTGVIP 264
+I + E + E L+ S GDMR I LQS A E V + + + T
Sbjct: 188 FIVKSEGLQMTPDGREALLRVSKGDMRTVINTLQSTAMSFEVVSESTVYQCIGQPTPAEM 247
Query: 265 KPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDI 304
K + LL + + K + L Y+ + HD+
Sbjct: 248 KKVVTLLLNQTAKTCMNKIKKSLFENGYALQDVITHLHDL 287
>gi|453083984|gb|EMF12029.1| replication factor C subunit 3 [Mycosphaerella populorum SO2202]
Length = 399
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 110/253 (43%), Positives = 153/253 (60%), Gaps = 23/253 (9%)
Query: 13 DAPS----------SSKTSVSTSGKTRNKPV------PWVEKYRPKTIDDVIEQQEVVSV 56
DAPS SS T+ N PV PWVEKYRP + DV Q++++
Sbjct: 11 DAPSRASNTDDIVFSSNTNSKGKRSAANLPVEAEDTLPWVEKYRPNALADVSGHQDILAT 70
Query: 57 LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRD 115
+ K + LPH L YGPPGTGKTST++A +++G+ R+ +LELNASDDRGI V+R+
Sbjct: 71 INKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVLELNASDDRGIDVVRE 130
Query: 116 KVKTFA---QQTASGFNQ---DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTR 169
++KTF+ Q A F++ D +K++ILDEAD+MT AQ ALRR MEK T +TR
Sbjct: 131 QIKTFSSTKQIFAGSFDKTRRDDSSIAHYKLIILDEADAMTSTAQMALRRIMEKYTANTR 190
Query: 170 FCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSG 229
FC+I NY + L SRC++FRF PL + + + + +E+V + A ++LV S
Sbjct: 191 FCIIANYTHKLSPALLSRCTRFRFSPLKDADIRQLIDRVITEENVNIEPTAADSLVTLSK 250
Query: 230 GDMRRAITCLQSC 242
GDMRRA+ LQ+C
Sbjct: 251 GDMRRALNVLQAC 263
>gi|307170254|gb|EFN62614.1| Replication factor C subunit 5 [Camponotus floridanus]
Length = 329
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 109/241 (45%), Positives = 153/241 (63%), Gaps = 13/241 (5%)
Query: 23 STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
ST+ + R +PWVEKYRPK++D++I + ++ + K + LPH L YGPPGTGKTST
Sbjct: 3 STTAEQRAN-LPWVEKYRPKSLDELISHETIIRTINKFIDENQLPHLLLYGPPGTGKTST 61
Query: 83 MIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIV 141
++A +L+ + +LELNASDDRGI ++R ++ +FA T + + FK++
Sbjct: 62 ILACARKLYTPTQFNSMVLELNASDDRGIGIVRGQILSFA-STGTMYKS------AFKLI 114
Query: 142 ILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTM 201
ILDEAD+MT AQ ALRR +EK T + RFC+ICNY+S II L SRC++FRF PLA +
Sbjct: 115 ILDEADAMTIDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQI 174
Query: 202 LTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVT 260
+ RL Y+ E E++ E L+ SGGDMR+ ++ LQS GIVN E+V
Sbjct: 175 IPRLNYVIEAENLKVTEDGKEALMTLSGGDMRKVLSVLQSTW---FAYGIVNQENVYNCV 231
Query: 261 G 261
G
Sbjct: 232 G 232
>gi|448683820|ref|ZP_21692440.1| replication factor C small subunit [Haloarcula japonica DSM 6131]
gi|445783393|gb|EMA34222.1| replication factor C small subunit [Haloarcula japonica DSM 6131]
Length = 325
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 97/209 (46%), Positives = 137/209 (65%), Gaps = 8/209 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DDV+ + +V LK +S DL H LF GP GTGKT+ A +L+GD
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI V+RD++K FA+ + G ++I+ LDEAD++T AQ
Sbjct: 76 WREHFLELNASDERGIDVVRDRIKNFARTSFGGV--------EYRIIFLDEADALTSDAQ 127
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + + RF L CNY S II P+ SRC+ FRF PLA++ + ++ I +E +
Sbjct: 128 SALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVADEIRNIAAEEDI 187
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCA 243
L+ LV + GDMR+AI LQ+ +
Sbjct: 188 ELTEDGLDALVYAADGDMRKAINGLQAAS 216
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDSF 378
L+ LV + GDMR+AI LQ+ + G+ + V +T I +++ +D
Sbjct: 193 GLDALVYAADGDMRKAINGLQAAS--VSGDTVDESAVYAITSTARPEEIRTMVQSALDGD 250
Query: 379 QVLEKYIEDLIL--EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+ D +L E + + DQ H + + D+ +LE++ E + R+ GA+
Sbjct: 251 FTASRATLDRLLTEEGIAGGDIIDQLHRSIWEF-DIDDEAAVRVLERIGETDYRITRGAN 309
Query: 437 EYIQI 441
E +Q+
Sbjct: 310 ERVQL 314
>gi|76801102|ref|YP_326110.1| replication factor C small subunit [Natronomonas pharaonis DSM
2160]
gi|83288436|sp|Q3ITJ2.1|RFCS_NATPD RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|76556967|emb|CAI48541.1| replication factor C small subunit [Natronomonas pharaonis DSM
2160]
Length = 325
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 97/232 (41%), Positives = 147/232 (63%), Gaps = 11/232 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DD++ + + LK+ ++ DLPH LF GP G GKT+ A +++GD
Sbjct: 14 WIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGDD 73
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD RGI V+RD++K+FA+ + G++ +I+ LDEAD++T AQ
Sbjct: 74 WRENFLELNASDQRGIDVVRDRIKSFARASFGGYDH--------RIIFLDEADALTSDAQ 125
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL + + +++ I + E +
Sbjct: 126 SALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDEQIRIIADTEGI 185
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP 266
++ LV + GDMR+AI LQ+ A + G V+E+ + +P
Sbjct: 186 ELTDDGVDALVYAADGDMRKAINGLQAAAVMG---GTVDEEAVYTITSTARP 234
>gi|448680330|ref|ZP_21690647.1| replication factor C small subunit [Haloarcula argentinensis DSM
12282]
gi|445768774|gb|EMA19851.1| replication factor C small subunit [Haloarcula argentinensis DSM
12282]
Length = 325
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 97/209 (46%), Positives = 137/209 (65%), Gaps = 8/209 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DDV+ + +V LK +S DL H LF GP GTGKT+ A +L+GD
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI V+RD++K FA+ + G ++I+ LDEAD++T AQ
Sbjct: 76 WREHFLELNASDERGIDVVRDRIKNFARTSFGGV--------EYRIIFLDEADALTSDAQ 127
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + + RF L CNY S II P+ SRC+ FRF PLA++ + ++ I +E +
Sbjct: 128 SALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAEEDI 187
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCA 243
L+ LV + GDMR+AI LQ+ +
Sbjct: 188 ELTEDGLDALVYAADGDMRKAINGLQAAS 216
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDSF 378
L+ LV + GDMR+AI LQ+ + G+ + V +T I +++ +D
Sbjct: 193 GLDALVYAADGDMRKAINGLQAAS--VSGDTVDESAVYAITSTARPEEIRTMVQSALDGD 250
Query: 379 QVLEKYIEDLIL--EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+ D +L E + + DQ H + + D +LE++ E + R+ GA+
Sbjct: 251 FTASRATLDRLLTEEGIAGGDIIDQLHRSIWEF-DIGDDAAVRVLERIGETDYRITRGAN 309
Query: 437 EYIQI 441
E +Q+
Sbjct: 310 ERVQL 314
>gi|366988087|ref|XP_003673810.1| hypothetical protein NCAS_0A08710 [Naumovozyma castellii CBS 4309]
gi|342299673|emb|CCC67429.1| hypothetical protein NCAS_0A08710 [Naumovozyma castellii CBS 4309]
Length = 321
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 113/269 (42%), Positives = 161/269 (59%), Gaps = 15/269 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+ +DD++ +E + LK+ ++PH + G PG GKT++++ H+L G
Sbjct: 10 LPWVEKYRPRVLDDIVGNEETILRLKQIAQDGNMPHMIISGLPGIGKTTSVLCLAHELLG 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
D Y + +LELNASDDRGI+V+R+++K FAQ+ + PP KI+ILDEADSMT
Sbjct: 70 DDYSKAVLELNASDDRGIEVVRNQIKQFAQKKSL--------LPPGKHKIIILDEADSMT 121
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME + STRF CN + II+PL SRC+ R+ L++ +L RL I +
Sbjct: 122 AGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYTKLSDEQVLKRLLQIIK 181
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW-IE 269
E V LE ++ T+ GDMR+AI LQS G G+VN D + P P +
Sbjct: 182 AEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNGDNVFKIVDSPHPLVVR 238
Query: 270 KLLKVDSF-QVLEKYIEDLILEAYSATQL 297
K+L + + L +DL + YSA +
Sbjct: 239 KMLLAPTLDESLTHLRKDLWGKGYSAVDI 267
Score = 45.1 bits (105), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IEKLLKVDSF- 378
LE ++ T+ GDMR+AI LQS G G+VN D + P+P + K+L +
Sbjct: 191 GLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNGDNVFKIVDSPHPLVVRKMLLAPTLD 247
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
+ L +DL + YSA + + S + + ++ +++++ + R+ +G S Y
Sbjct: 248 ESLTHLRKDLWGKGYSAVDIVTTSFRVTKSLFDIRESKRLEMIKEIGITHMRILEGVSTY 307
Query: 439 IQI 441
+Q+
Sbjct: 308 LQL 310
>gi|427798817|gb|JAA64860.1| Putative replication factor c activator 1 5, partial [Rhipicephalus
pulchellus]
Length = 314
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 101/220 (45%), Positives = 147/220 (66%), Gaps = 10/220 (4%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
S T N +PWVEKYRP+ +DD+I ++++S + + + LPH LFYGPPGTGKTST++
Sbjct: 2 SAATTN--LPWVEKYRPQKLDDLIAHEDIISTIGRFIKEDKLPHLLFYGPPGTGKTSTIL 59
Query: 85 AACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A Q++ + ++LELNASDDRGI ++R ++ +FA T + FN FK+++L
Sbjct: 60 ACAQQIYSPKEFTSKVLELNASDDRGIGIVRGEILSFAS-TKTIFNTG------FKLIVL 112
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT+ AQ ALRR +EK T++ RFCLICNY+S II L SRC++FRF PL M
Sbjct: 113 DEADAMTNDAQNALRRVIEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLTAAQMSP 172
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
R+ ++ QE + + L++ + GDMR+A+ LQS +
Sbjct: 173 RIDHVITQERLTVTADGKKALMDLAQGDMRKALNILQSTS 212
>gi|358056280|dbj|GAA97763.1| hypothetical protein E5Q_04442 [Mixia osmundae IAM 14324]
Length = 382
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 121/293 (41%), Positives = 167/293 (56%), Gaps = 19/293 (6%)
Query: 14 APSSSKTSVSTSGKTRNKPV----PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHF 69
A + SK +G T + PV PWVEKYRP +DD++ +E + LK + PH
Sbjct: 38 AMTESKGKGRANGDTDDGPVAYEMPWVEKYRPAVLDDIVGNEETIERLKVIARDGNCPHI 97
Query: 70 LFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN 129
+ G PG GKT++++A H L G Y+E +LELNASD+RGI V+R+++KTFAQ+ +
Sbjct: 98 IISGQPGIGKTTSILALAHALLGKAYKEGVLELNASDERGIDVVRNRIKTFAQKKVT--- 154
Query: 130 QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189
P KI+ILDEADSMT AQ ALRRTME + +TRF L CN + II+P+ SRC+
Sbjct: 155 ---LPAGRHKIIILDEADSMTPGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCA 211
Query: 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249
R+ L++ +L R+ IC+ E V AL +L+ TS GDMR+AI LQS G
Sbjct: 212 ILRYARLSDKQLLKRIVEICDMEQVKYSDDALASLIFTSDGDMRQAINNLQST---YSGF 268
Query: 250 GIVNEDVLEVTGVIPKP-----WIEKLLKVDSFQVLEKYIEDLILEAYSATQL 297
G V+ + + P P IE K D V + +E L + YSA +
Sbjct: 269 GFVSSEAVFKVCDQPHPVTVNKMIEACAKGD-IDVSMEMLEKLWHQGYSAVDI 320
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 9/129 (6%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIV-NEDVLEVTG----VIPNPWIEKLLKV 375
AL +L+ TS GDMR+AI LQS G G V +E V +V V N IE K
Sbjct: 242 ALASLIFTSDGDMRQAINNLQST---YSGFGFVSSEAVFKVCDQPHPVTVNKMIEACAKG 298
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
D V + +E L + YSA + + S L + K ++++ + R+ +G
Sbjct: 299 D-IDVSMEMLEKLWHQGYSAVDIVTTIFRVTKSTDVLPEYTKLEFIKEIGFSHMRILEGV 357
Query: 436 SEYIQILDL 444
S Q+ L
Sbjct: 358 STLTQLSGL 366
>gi|330922359|ref|XP_003299806.1| hypothetical protein PTT_10878 [Pyrenophora teres f. teres 0-1]
gi|311326367|gb|EFQ92093.1| hypothetical protein PTT_10878 [Pyrenophora teres f. teres 0-1]
Length = 393
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 139/214 (64%), Gaps = 4/214 (1%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DDV +++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 43 LPWVEKYRPNSLDDVEGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYG 102
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPCPPFKIVILDEADS 148
+ R+ +LELNASDDRGI V+R+++KTF+ Q AS FK++ILDEAD+
Sbjct: 103 NKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFASAPKTGDSSLATFKLIILDEADA 162
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL + + + +
Sbjct: 163 MTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVDKV 222
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
E E V A +LV S GDMRRA+ LQ+C
Sbjct: 223 IEDEKVNITQDATGSLVTLSKGDMRRALNVLQAC 256
>gi|392571020|gb|EIW64192.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 345
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 123/292 (42%), Positives = 167/292 (57%), Gaps = 22/292 (7%)
Query: 16 SSSKTSVSTSGKTRNKP---VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFY 72
S++K +G N P +PWVEKYRP+ +DDV+ + + LK + PH +
Sbjct: 4 STAKGKAPANGNAANLPNYELPWVEKYRPQVLDDVVGNTDTIERLKIIARDGNCPHIIIS 63
Query: 73 GPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
G PG GKT+++ HQL GD Y+E +LELNASD+RGI V+R+K+K+FAQ+ +
Sbjct: 64 GMPGIGKTTSIHCLAHQLLGDGYKEGVLELNASDERGIDVVRNKIKSFAQKKVT------ 117
Query: 133 KPCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190
PP KIVILDEADSMT AQ ALRRTME +TRF L CN + II+P+ SRC+
Sbjct: 118 --LPPGRHKIVILDEADSMTAGAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCAI 175
Query: 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG 250
R+ L + +L RL ICE E V + LE L+ T+ GDMR+AI LQS G G
Sbjct: 176 LRYSKLRDQEVLKRLLEICEMEKVEYSNEGLEALIFTAEGDMRQAINNLQSTW---SGFG 232
Query: 251 IVNEDVLEVTGVIPKP-----WIEKLLKVDSFQVLEKYIEDLILEAYSATQL 297
V+ D + P P I LK D ++K +++L + YSA +
Sbjct: 233 FVSGDNVFKVCDQPHPITVQAMIRACLKGDIEGAMDK-LDELWDQGYSAVDI 283
Score = 38.5 bits (88), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 9/138 (6%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----WIEKLLK 374
+ LE L+ T+ GDMR+AI LQS G G V+ D + P+P I LK
Sbjct: 204 EGLEALIFTAEGDMRQAINNLQSTW---SGFGFVSGDNVFKVCDQPHPITVQAMIRACLK 260
Query: 375 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
D ++K +++L + YSA + +V + + + K ++++ + R+ +G
Sbjct: 261 GDIEGAMDK-LDELWDQGYSAVDIVVTVFRVVKTFDEIPEYTKLEYIKEIGWTHMRILEG 319
Query: 435 ASEYIQILDLGSIVIKAN 452
IQ+ L + + K N
Sbjct: 320 VGTLIQLGGLMARLCKMN 337
>gi|242770327|ref|XP_002341956.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
stipitatus ATCC 10500]
gi|218725152|gb|EED24569.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
stipitatus ATCC 10500]
Length = 399
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 143/219 (65%), Gaps = 13/219 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++D+V Q++++ + + + LPH L YGPPGTGKT+T++A +++G
Sbjct: 45 LPWVEKYRPNSLDEVQGHQDILATINRFIDSHRLPHLLLYGPPGTGKTTTILALARRIYG 104
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQ--------TASGFNQDGKPCPPFKIVIL 143
R+ +LELNASDDRGI V+R+++KTFA A+ N G FK++IL
Sbjct: 105 IKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSVAAPAAKENSLGA----FKLIIL 160
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + +
Sbjct: 161 DEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEADIRS 220
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ + E E+V +A E+LV S GDMRRA+ LQ+C
Sbjct: 221 LVDKVIEAENVRIQPEATESLVRLSKGDMRRALNVLQAC 259
>gi|298675837|ref|YP_003727587.1| replication factor C [Methanohalobium evestigatum Z-7303]
gi|298288825|gb|ADI74791.1| Replication factor C [Methanohalobium evestigatum Z-7303]
Length = 318
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 102/240 (42%), Positives = 152/240 (63%), Gaps = 11/240 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP +DD++ Q E + LK +S +LPH LF GPPG GKT+ +A +LFGD
Sbjct: 6 WIEKYRPFKLDDIVGQGEAIKRLKSYISTNNLPHLLFSGPPGVGKTAAAVAIAKELFGDA 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+ + ELNASD+RGI V+R K+K F++ + G FKI+ LDEAD++T AQ
Sbjct: 66 WHQNFTELNASDERGIDVVRTKIKDFSKTSPIG-------GADFKIIFLDEADALTPDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ T + RF L CNY S II+P+ SRC+ +RF+ L+ + R++YI EQE +
Sbjct: 119 SALRRTMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRSLSYEAVEKRVRYIAEQEGL 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPKPWIEKLLK 273
+E + S GDMR+AI LQ+ A + + ++++D + ++T IE+L++
Sbjct: 179 QISEDGVEAIKYVSQGDMRKAINALQASALI---DDVIDKDTIYKITATAHPEEIEELVQ 235
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 67/126 (53%), Gaps = 9/126 (7%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEKLLKV---D 376
+E + S GDMR+AI LQ+ A + + ++++D + ++T IE+L++
Sbjct: 184 GVEAIKYVSQGDMRKAINALQASALI---DDVIDKDTIYKITATAHPEEIEELVQKALDG 240
Query: 377 SFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
+F+ + +E L+ E S + Q + + + + +K +++K+ E + RL +GA
Sbjct: 241 NFKAARETMEKLMSEQGLSGEDVVGQIYRAIFNLD-IPEKLMVELVDKIGEIDFRLTEGA 299
Query: 436 SEYIQI 441
+E IQ+
Sbjct: 300 NERIQL 305
>gi|57012999|sp|Q5UZE5.2|RFCS_HALMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 325
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 97/209 (46%), Positives = 137/209 (65%), Gaps = 8/209 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DDV+ + +V LK +S DL H LF GP GTGKT+ A +L+GD
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI V+RD++K FA+ + G ++I+ LDEAD++T AQ
Sbjct: 76 WREHFLELNASDERGIDVVRDRIKNFARTSFGGV--------EYRIIFLDEADALTSDAQ 127
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + + RF L CNY S II P+ SRC+ FRF PLA++ + ++ I +E +
Sbjct: 128 SALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDI 187
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCA 243
L+ LV + GDMR+AI LQ+ +
Sbjct: 188 ELTEDGLDALVYAADGDMRKAINGLQAAS 216
Score = 38.1 bits (87), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDSF 378
L+ LV + GDMR+AI LQ+ + G+ + V +T I +++ +D
Sbjct: 193 GLDALVYAADGDMRKAINGLQAAS--VSGDTVDESAVYAITSTARPEEIRTMVQSALDGD 250
Query: 379 QVLEKYIEDLIL--EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+ D +L E + + DQ H + + D +LE++ E + R+ GA+
Sbjct: 251 FTASRATLDRLLTEEGIAGGDIIDQLHRSIWEF-DIDDDAAVRVLERIGETDYRITRGAN 309
Query: 437 EYIQI 441
E +Q+
Sbjct: 310 ERVQL 314
>gi|448638308|ref|ZP_21676281.1| replication factor C small subunit [Haloarcula sinaiiensis ATCC
33800]
gi|448655209|ref|ZP_21682061.1| replication factor C small subunit [Haloarcula californiae ATCC
33799]
gi|445763557|gb|EMA14744.1| replication factor C small subunit [Haloarcula sinaiiensis ATCC
33800]
gi|445765658|gb|EMA16796.1| replication factor C small subunit [Haloarcula californiae ATCC
33799]
Length = 325
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 97/209 (46%), Positives = 137/209 (65%), Gaps = 8/209 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DDV+ + +V LK +S DL H LF GP GTGKT+ A +L+GD
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI V+RD++K FA+ + G ++I+ LDEAD++T AQ
Sbjct: 76 WREHFLELNASDERGIDVVRDRIKNFARTSFGGV--------EYRIIFLDEADALTSDAQ 127
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + + RF L CNY S II P+ SRC+ FRF PLA++ + ++ I +E +
Sbjct: 128 SALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDI 187
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCA 243
L+ LV + GDMR+AI LQ+ +
Sbjct: 188 ELTEDGLDALVYAADGDMRKAINGLQAAS 216
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDSF 378
L+ LV + GDMR+AI LQ+ + G+ + V +T I +++ +D
Sbjct: 193 GLDALVYAADGDMRKAINGLQAAS--VSGDTVDESAVYAITSTARPEEIRTMVQSALDGD 250
Query: 379 QVLEKYIEDLIL--EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+ D +L E + + DQ H + + D+ +LE++ E + R+ GA+
Sbjct: 251 FTASRATLDRLLTEEGIAGGDIIDQLHRSIWEF-DIDDEAAVRVLERIGETDYRITRGAN 309
Query: 437 EYIQI 441
E +Q+
Sbjct: 310 ERVQL 314
>gi|224074887|ref|XP_002304476.1| predicted protein [Populus trichocarpa]
gi|222841908|gb|EEE79455.1| predicted protein [Populus trichocarpa]
Length = 330
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 127/323 (39%), Positives = 181/323 (56%), Gaps = 31/323 (9%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTS 81
+++S + N +PWVEKYRP + D++ Q+ VS L+ ++P+ + GPPGTGKT+
Sbjct: 1 MASSSNSSNYDIPWVEKYRPNKVADIVGNQDAVSRLQVIARDGNMPNLILAGPPGTGKTT 60
Query: 82 TMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FK 139
+++A H+L G +E +LELNASDDRGI V+R+K+K FAQ+ + PP K
Sbjct: 61 SILALAHELLGPNSKEAVLELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGQHK 112
Query: 140 IVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAEN 199
IVILDEADSMT AQ ALRRTME + STRF L CN S II+P+ SRC+ RF L++
Sbjct: 113 IVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQ 172
Query: 200 TMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 259
+L RL + E V + LE ++ T+ GDMR+A+ LQ A G + E+V +V
Sbjct: 173 EILGRLMVVVGAEQVPYVPEGLEAIIFTADGDMRQALNNLQ--ATHSGFHFVNQENVFKV 230
Query: 260 TGVIPKP-WIEKLLKVDSFQVLEKYIED-------LILEAYSATQLFDQFHDIVMLASSL 311
P P ++ +++ QVLE +D L YS T + I L +
Sbjct: 231 CDQ-PHPLHVKNMVR----QVLEGKFDDACSGLKHLYDMGYSPTDI------ITTLFRII 279
Query: 312 SDKQKALFKALETLVETSGGDMR 334
+ A + LE + ET MR
Sbjct: 280 KNYDMAEYMKLEFMKETGFAHMR 302
>gi|261200183|ref|XP_002626492.1| activator 1 subunit 3 [Ajellomyces dermatitidis SLH14081]
gi|239593564|gb|EEQ76145.1| activator 1 subunit 3 [Ajellomyces dermatitidis SLH14081]
gi|239607557|gb|EEQ84544.1| replication factor C [Ajellomyces dermatitidis ER-3]
gi|327357386|gb|EGE86243.1| replication factor C [Ajellomyces dermatitidis ATCC 18188]
Length = 404
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 109/249 (43%), Positives = 152/249 (61%), Gaps = 19/249 (7%)
Query: 13 DAPSSSKT------SVSTSGK--TRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLK 58
DAP S T + + GK T + P+ PWVEKYRP T++DV Q+++ +
Sbjct: 11 DAPPSKNTVQFSSDNTNARGKRITADLPIEAEDNLPWVEKYRPNTLEDVSGHQDIIGTIN 70
Query: 59 KCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKV 117
+ + LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+RD++
Sbjct: 71 RFIDTNRLPHLLLYGPPGTGKTSTILALARRIYGVKNMRQMVLELNASDDRGIDVVRDQI 130
Query: 118 KTFAQQ----TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLI 173
KTFA + + + FK++ILDEAD+MT AQ ALRR MEK T + RFC+I
Sbjct: 131 KTFASTKQIFSMAPAAKAESTLGAFKLIILDEADAMTAVAQMALRRIMEKYTANARFCII 190
Query: 174 CNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMR 233
NY + L SRC++FRF PL E + + + E E V +A+++LV+ S GDMR
Sbjct: 191 ANYSHKLSPALLSRCTRFRFSPLKEKDIRVLVDQVIETEQVRIQPEAIDSLVKLSKGDMR 250
Query: 234 RAITCLQSC 242
RA+ LQ+C
Sbjct: 251 RALNVLQAC 259
>gi|398392868|ref|XP_003849893.1| hypothetical protein MYCGRDRAFT_110326 [Zymoseptoria tritici
IPO323]
gi|339469771|gb|EGP84869.1| hypothetical protein MYCGRDRAFT_110326 [Zymoseptoria tritici
IPO323]
Length = 460
Score = 208 bits (530), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 109/248 (43%), Positives = 152/248 (61%), Gaps = 12/248 (4%)
Query: 7 TGKLGKDAPSSSKTSVSTSGKTRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKC 60
T K D SS T+ N P+ PWVEKYRP ++DDV Q++++ + K
Sbjct: 15 TSKPSDDITFSSSTTAKGKRSAANLPIEAEDTLPWVEKYRPSSLDDVHGHQDILATINKF 74
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKT 119
+ LPH L YGPPGTGKTST++A +++G+ R+ +LELNASDDRGI V+R+++KT
Sbjct: 75 VDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVLELNASDDRGIDVVREQIKT 134
Query: 120 FA---QQTASGFNQDGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
F+ Q A F++ + +K++ILDEAD+MT AQ ALRR MEK T +TRFC+I
Sbjct: 135 FSSTKQIFAGSFDKSAQQSTIANYKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIA 194
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NY + L SRC++FRF PL E + + + +E V A ++LV S GDMRR
Sbjct: 195 NYTHKLSPALLSRCTRFRFSPLKEVDIRQLVDKVVREEDVNIAPDATDSLVTLSKGDMRR 254
Query: 235 AITCLQSC 242
A+ LQ+C
Sbjct: 255 ALNVLQAC 262
>gi|371943985|gb|AEX61813.1| putative replication factor C small subunit [Megavirus courdo7]
gi|425701544|gb|AFX92706.1| putative replication factor C small subunit [Megavirus courdo11]
Length = 364
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 141/214 (65%), Gaps = 1/214 (0%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPW+EKYRP+ + D ++ Q ++++ K + ++ HFLFYGPPGTGKTS ++A ++F
Sbjct: 9 VPWIEKYRPRKLKDFVQSQNLINLFKNSTAKGEMTHFLFYGPPGTGKTSVILAMGREIFK 68
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ-DGKPCPPFKIVILDEADSMTH 151
+ + R++E NASDDRGI +R+K+ A++ + + DG P +KI+ILDEADSMT
Sbjct: 69 EHFTTRVIEFNASDDRGINAVREKITNEAKKFVTQIVKPDGTIIPSYKIIILDEADSMTD 128
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALR +E+ + +TRFC ICNY+S I + SRC+ FK L + M+ +L+ I +
Sbjct: 129 EAQDALRVIIEQYSTTTRFCFICNYISKITDAIKSRCTAIYFKKLDDECMIDKLKEISTK 188
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245
ES+ + L T+++ S GDMR+AI LQ+ L
Sbjct: 189 ESMKLSNEILSTIIDVSNGDMRKAIMLLQNLKYL 222
>gi|284163322|ref|YP_003401601.1| replication factor C [Haloterrigena turkmenica DSM 5511]
gi|284012977|gb|ADB58928.1| Replication factor C [Haloterrigena turkmenica DSM 5511]
Length = 330
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 107/281 (38%), Positives = 166/281 (59%), Gaps = 19/281 (6%)
Query: 31 KPVP-----WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIA 85
+P P W+EKYRP+ +D++ + +V LK+ + +LP+ +F GP GTGKT+ +
Sbjct: 10 EPTPGRTEVWIEKYRPERLDEIKGHENIVPRLKQYVERDELPNLMFAGPAGTGKTTAAVG 69
Query: 86 ACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145
+++GD +RE LELNASD RGI V+RD++K FA+ + G++ +I+ LDE
Sbjct: 70 IAREIYGDDWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYSH--------RIIFLDE 121
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L E+ + ++
Sbjct: 122 ADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQV 181
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPK 265
+ I E + ++ LV + GDMR+AI LQ+ A + GE + E V +T
Sbjct: 182 REIAANEGIEVTDDGVDALVYAADGDMRKAINGLQAAAVM--GETVDEETVFAITATARP 239
Query: 266 PWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFH 302
+EK+++ +D F +EDL+ E + + DQ H
Sbjct: 240 EEVEKMVEHAIDGDFTAARAALEDLLTERGLAGGDVIDQLH 280
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 65/127 (51%), Gaps = 11/127 (8%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDS- 377
++ LV + GDMR+AI LQ+ A + GE + E V +T +EK+++ +D
Sbjct: 196 GVDALVYAADGDMRKAINGLQAAAVM--GETVDEETVFAITATARPEEVEKMVEHAIDGD 253
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALI--LEKLAECNARLQDG 434
F +EDL+ E + + DQ H SA + A + LE+L E + R+ +G
Sbjct: 254 FTAARAALEDLLTERGLAGGDVIDQLH---RSAWEFDIPEMATVRLLERLGEVDYRITEG 310
Query: 435 ASEYIQI 441
A+E +Q+
Sbjct: 311 ANERLQL 317
>gi|304314452|ref|YP_003849599.1| replication factor C, small subunit [Methanothermobacter
marburgensis str. Marburg]
gi|302587911|gb|ADL58286.1| replication factor C, small subunit [Methanothermobacter
marburgensis str. Marburg]
Length = 317
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 101/227 (44%), Positives = 143/227 (62%), Gaps = 10/227 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ +DD++ Q+ ++ LK+ + +P+ +F GP G GKT+T +A ++ G+
Sbjct: 4 PWVEKYRPQKLDDIVGQEHIIPRLKRYVEERSMPNLMFTGPAGVGKTTTALALAREILGE 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R+ LELNASD RGI +R +K F + G PF+I+ LDE D+MT A
Sbjct: 64 YWRQNFLELNASDARGIDTVRTSIKNFCRLKPVG--------APFRIIFLDEVDNMTKDA 115
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME TK++ F L CNY S II P+ SRC+ FRF PL +++RL+YI EQE
Sbjct: 116 QHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGRHIISRLEYIAEQEG 175
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVT 260
+ + +AL+T+V + GD+R+AI LQS A L GE I + EV
Sbjct: 176 LEYEPQALDTVVYFAEGDLRKAINILQSAASL--GEKITESSIYEVV 220
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL----LKV 375
+AL+T+V + GD+R+AI LQS A L GE I + EV + K+ L
Sbjct: 181 QALDTVVYFAEGDLRKAINILQSAASL--GEKITESSIYEVVSRARPKDVRKMIMTILDG 238
Query: 376 DSFQVLEKYIEDLILEAYSA----TQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 431
+ + E ++L+ S TQ++ + + M S ++ LI E + E + R+
Sbjct: 239 KFMEARDMLREIMVLQGISGEDMVTQIYQELSRLAMEGSIEGERYIKLI-EAVGEYDFRI 297
Query: 432 QDGASEYIQI 441
++GA+ IQ+
Sbjct: 298 REGANPRIQL 307
>gi|322698624|gb|EFY90393.1| activator 1 subunit 3 [Metarhizium acridum CQMa 102]
Length = 921
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 114/245 (46%), Positives = 161/245 (65%), Gaps = 15/245 (6%)
Query: 13 DAPSSSK----TSVSTSGK--TRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKC 60
DAP++SK +S +T GK T N PV PW+EKYRP T+DDV Q++++ + K
Sbjct: 11 DAPATSKDVIFSSEATKGKRSTANLPVEAEDSLPWIEKYRPATLDDVSGHQDILATINKF 70
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKT 119
+ LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++KT
Sbjct: 71 VDSNRLPHLLLYGPPGTGKTSTILALARRIYGAANMRQMVLELNASDDRGIDVVREQIKT 130
Query: 120 FA--QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYV 177
FA +Q + FK++ILDEAD+MT+ AQ ALRR MEK T +TRFC+I NY
Sbjct: 131 FASTKQIFTMGASAKSSIAGFKLIILDEADAMTNTAQMALRRIMEKYTVNTRFCIIANYS 190
Query: 178 SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAIT 237
+ L SRC++FRF PL E + ++ + E+E+V +A++ L++ S GDMRRA+
Sbjct: 191 HKLSPALLSRCTRFRFSPLKEGDIRVLVEKVVEEENVQIGGEAVDALIKLSKGDMRRALN 250
Query: 238 CLQSC 242
LQ+C
Sbjct: 251 VLQAC 255
>gi|169626367|ref|XP_001806584.1| hypothetical protein SNOG_16470 [Phaeosphaeria nodorum SN15]
gi|111055048|gb|EAT76168.1| hypothetical protein SNOG_16470 [Phaeosphaeria nodorum SN15]
Length = 393
Score = 208 bits (529), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 141/214 (65%), Gaps = 4/214 (1%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DDV +++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 43 LPWVEKYRPTSLDDVEGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYG 102
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA--QQTASGFNQDGKPC-PPFKIVILDEADS 148
+ R+ +LELNASDDRGI V+R+++KTF+ +Q S + G FK++ILDEAD+
Sbjct: 103 NKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFSAAPKAGDSALATFKLIILDEADA 162
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL + + + +
Sbjct: 163 MTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVDKV 222
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
E E V A +LV S GDMRRA+ LQ+C
Sbjct: 223 IEDEKVNITQDAASSLVTLSKGDMRRALNVLQAC 256
>gi|435845437|ref|YP_007307687.1| DNA polymerase III, gamma/tau subunit [Natronococcus occultus SP4]
gi|433671705|gb|AGB35897.1| DNA polymerase III, gamma/tau subunit [Natronococcus occultus SP4]
Length = 330
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 167/289 (57%), Gaps = 14/289 (4%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
S+ + T K W+EKYRP+ +D++ +++V L++ + DLPH LF GP GT
Sbjct: 2 SEADAEAAEPTPGKTEVWIEKYRPERLDEIKGHEDIVPRLQRYVEQNDLPHLLFAGPAGT 61
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKT+ A +++ D +RE LELNASD RGI V+RD++K FA+ + G++
Sbjct: 62 GKTTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYDH------- 114
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L
Sbjct: 115 -RIIFLDEADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELT 173
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
E+ + +++ I +E + ++ L+ + GDMR+AI LQ+ A + GE + E V
Sbjct: 174 EDALEAQIREIATEEGIEVTDDGVDALIYAADGDMRKAINGLQAAAVM--GEVVDEETVF 231
Query: 258 EVTGVIPKPWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFH 302
+T +E ++ +D F +EDL+ E + + DQ H
Sbjct: 232 AITSTARPEEVEAMVDQAIDGDFTAARAALEDLLTERGLAGGDVIDQLH 280
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 7/125 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDS- 377
++ L+ + GDMR+AI LQ+ A + GE + E V +T +E ++ +D
Sbjct: 196 GVDALIYAADGDMRKAINGLQAAAVM--GEVVDEETVFAITSTARPEEVEAMVDQAIDGD 253
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F +EDL+ E + + DQ H +S+ +LE+L E + R+ +GA+
Sbjct: 254 FTAARAALEDLLTERGLAGGDVIDQLHRSAWQ-FDISETATVRLLERLGEVDYRITEGAN 312
Query: 437 EYIQI 441
E +Q+
Sbjct: 313 ERLQL 317
>gi|346325998|gb|EGX95594.1| activator 1 subunit 3 [Cordyceps militaris CM01]
Length = 420
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 110/250 (44%), Positives = 157/250 (62%), Gaps = 22/250 (8%)
Query: 14 APSSSKTSV----STSGK--TRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCL 61
AP+ + ++ ++ GK T N PV PW+EKYRP ++DDV Q++++ + K +
Sbjct: 13 APAQNNAALFSADASKGKRSTANLPVEAEDTLPWIEKYRPVSLDDVEGHQDILATINKFV 72
Query: 62 SGADLPHFLFYGPPGTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTF 120
LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++KTF
Sbjct: 73 DSNRLPHLLLYGPPGTGKTSTILALARRIYGAAQARQMVLELNASDDRGIDVVREQIKTF 132
Query: 121 AQQTASGFNQDGKPCPP--------FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172
A T FN G +K++ILDEAD+MT+ AQ ALRR MEK T +TRFC+
Sbjct: 133 AS-TKQIFNMGGAAAAAGRSSAMAGYKLIILDEADAMTNTAQMALRRIMEKYTANTRFCI 191
Query: 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDM 232
I NY + L SRC++FRF PL E + + + ++E V +A++ LV+ S GDM
Sbjct: 192 IANYAHKLSPALLSRCTRFRFSPLKEADIRQLVVKVVDEEGVRIGAEAVDALVKLSKGDM 251
Query: 233 RRAITCLQSC 242
RRA+ LQ+C
Sbjct: 252 RRALNVLQAC 261
>gi|322368069|ref|ZP_08042638.1| replication factor C small subunit [Haladaptatus paucihalophilus
DX253]
gi|320552085|gb|EFW93730.1| replication factor C small subunit [Haladaptatus paucihalophilus
DX253]
Length = 325
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 107/272 (39%), Positives = 162/272 (59%), Gaps = 14/272 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+T+DDV ++ + LK + DLP+ LF G G GKT+ +A +L+GD
Sbjct: 16 WVEKYRPQTLDDVAGHDDITARLKSYIERNDLPNLLFSGQAGIGKTTCAVAIAKELYGDS 75
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++ LELNASD+RGI V+RD++K FA+ + F+I+ LDEADS+T AQ
Sbjct: 76 WQSHFLELNASDERGIDVVRDQIKNFARHDPGAVD--------FQIIFLDEADSLTSDAQ 127
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTME+ + TRF + CNY S II P+ SRC+ FRF P+ ++ + +QY+ ++E +
Sbjct: 128 AALRRTMEQFSDKTRFIMSCNYSSKIIDPIQSRCAVFRFGPIPDDAVAGYVQYVADEEGI 187
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK- 273
+E LV + GDMR+AI LQ+ A + GE + E V +T I+++++
Sbjct: 188 ETTDDGIEALVYAADGDMRKAINALQAAAVM--GEQVDEESVFVITSTARPEDIKEMVRH 245
Query: 274 -VDS-FQVLEKYIEDLILE-AYSATQLFDQFH 302
+D F +++L+ E + + DQ H
Sbjct: 246 AIDGDFTRSRSILDELLTERGMAGGDIIDQLH 277
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDS- 377
+E LV + GDMR+AI LQ+ A + GE + E V +T I+++++ +D
Sbjct: 193 GIEALVYAADGDMRKAINALQAAAVM--GEQVDEESVFVITSTARPEDIKEMVRHAIDGD 250
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F +++L+ E + + DQ H + L D +LE++ E + R+ +GA+
Sbjct: 251 FTRSRSILDELLTERGMAGGDIIDQLHRSIWE-FDLDDDDAVRVLERVGEADFRITEGAN 309
Query: 437 EYIQI 441
E +Q+
Sbjct: 310 ERVQL 314
>gi|392597749|gb|EIW87071.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 334
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 125/291 (42%), Positives = 169/291 (58%), Gaps = 27/291 (9%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
APSS+ T+ +PWVEKYRP +DDV+ E + LK + PH + G
Sbjct: 2 APSSAATAAYE--------LPWVEKYRPTLLDDVVGNVETIERLKVIAKDGNCPHIIISG 53
Query: 74 PPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133
PG GKT+++ HQL GD Y+E +LELNASD+RGI V+R+K+K+FAQ+ +
Sbjct: 54 LPGIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIDVVRNKIKSFAQKKVT------- 106
Query: 134 PCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
PP KIVILDEADSMT AQ ALRRTME + +TRFCL CN + II+P+ SRC+
Sbjct: 107 -LPPGRHKIVILDEADSMTGGAQQALRRTMEIYSNTTRFCLACNMSNKIIEPIQSRCAIL 165
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
R+ L + +L RL IC++E+V + L L+ T GDMR+AI LQS G G
Sbjct: 166 RYAKLRDTEVLARLLEICKEENVQYNDDGLTALIFTCEGDMRQAINNLQST---HSGFGF 222
Query: 252 VN-EDVLEVTG----VIPKPWIEKLLKVDSFQVLEKYIEDLILEAYSATQL 297
V+ E+V +V VI + I K + LEK + +L + YSA +
Sbjct: 223 VSGENVFKVCDQPHPVIVQAIIRACHKCEVDSALEK-LHELWDQGYSAVDI 272
>gi|55379214|ref|YP_137064.1| replication factor C small subunit [Haloarcula marismortui ATCC
43049]
gi|55231939|gb|AAV47358.1| replication factor C small subunit [Haloarcula marismortui ATCC
43049]
Length = 345
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 97/209 (46%), Positives = 137/209 (65%), Gaps = 8/209 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DDV+ + +V LK +S DL H LF GP GTGKT+ A +L+GD
Sbjct: 36 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 95
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI V+RD++K FA+ + G ++I+ LDEAD++T AQ
Sbjct: 96 WREHFLELNASDERGIDVVRDRIKNFARTSFGGVE--------YRIIFLDEADALTSDAQ 147
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + + RF L CNY S II P+ SRC+ FRF PLA++ + ++ I +E +
Sbjct: 148 SALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDI 207
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCA 243
L+ LV + GDMR+AI LQ+ +
Sbjct: 208 ELTEDGLDALVYAADGDMRKAINGLQAAS 236
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDSF 378
L+ LV + GDMR+AI LQ+ + G+ + V +T I +++ +D
Sbjct: 213 GLDALVYAADGDMRKAINGLQAAS--VSGDTVDESAVYAITSTARPEEIRTMVQSALDGD 270
Query: 379 QVLEKYIEDLIL--EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+ D +L E + + DQ H + + D +LE++ E + R+ GA+
Sbjct: 271 FTASRATLDRLLTEEGIAGGDIIDQLHRSIWEF-DIDDDAAVRVLERIGETDYRITRGAN 329
Query: 437 EYIQI 441
E +Q+
Sbjct: 330 ERVQL 334
>gi|311977891|ref|YP_003987011.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|81999791|sp|Q5UP47.1|RFCS3_MIMIV RecName: Full=Putative replication factor C small subunit L499;
Short=RFC small subunit L499; AltName: Full=Clamp loader
small subunit L499
gi|55417114|gb|AAV50764.1| putative replication factor C [Acanthamoeba polyphaga mimivirus]
gi|308204440|gb|ADO18241.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|339061437|gb|AEJ34741.1| putative replication factor C [Acanthamoeba polyphaga mimivirus]
gi|351737656|gb|AEQ60691.1| putative replication factor C small subunit [Acanthamoeba
castellanii mamavirus]
gi|398257325|gb|EJN40933.1| putative replication factor C [Acanthamoeba polyphaga
lentillevirus]
Length = 344
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 145/231 (62%), Gaps = 2/231 (0%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K +PWVEKYRP+ ID +I ++++ LKK + LPH LF+GP G+GKTST+ ++
Sbjct: 15 KQLPWVEKYRPQEIDHIISNRDIILSLKKFIESRTLPHLLFFGPSGSGKTSTIKCCAREI 74
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+G ILELNAS++RGI+ +R K+K F +S F G FK+VILDE DSMT
Sbjct: 75 YGKYINYMILELNASNERGIETVRTKIKNFVSSKSSIFLPMGVR-DIFKLVILDEIDSMT 133
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ LR+T+EK + +TRFCLICN + I L SRC+ FRF PL E M RL IC
Sbjct: 134 VEAQGMLRQTIEKNSGTTRFCLICNDIDKINIALQSRCASFRFSPLNELDMHGRLSDICR 193
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
E V + +A+ ++++ S GDMR AI LQ + GG I EDV +++G
Sbjct: 194 LEGVKYEKEAINSIIKISKGDMRSAINTLQHVNLVIGG-SINTEDVYKISG 243
>gi|363539784|ref|YP_004894673.1| mg622 gene product [Megavirus chiliensis]
gi|350610949|gb|AEQ32393.1| putative replication factor C small subunit [Megavirus chiliensis]
Length = 364
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 141/214 (65%), Gaps = 1/214 (0%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPW+EKYRP+ + D ++ Q ++++ K + ++ HFLFYGPPGTGKTS ++A ++F
Sbjct: 9 VPWIEKYRPRKLKDFVQSQNLINLFKNSTAKGEMTHFLFYGPPGTGKTSVILAMGREIFK 68
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ-DGKPCPPFKIVILDEADSMTH 151
+ + R++E NASDDRGI +R+K+ A++ + + DG P +KI+ILDEADSMT
Sbjct: 69 EHFTTRVIEFNASDDRGINAVREKITNEAKKFVTQIVKPDGTIIPSYKIIILDEADSMTD 128
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALR +E+ + +TRFC ICNY+S I + SRC+ FK L + M+ +L+ I +
Sbjct: 129 EAQDALRVIIEQYSTTTRFCFICNYISKITDAIKSRCTAIYFKKLDDGCMIDKLKEISTK 188
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245
ES+ + L T+++ S GDMR+AI LQ+ L
Sbjct: 189 ESMKLSNEILSTIIDVSNGDMRKAIMLLQNLKYL 222
>gi|448825607|ref|YP_007418538.1| putative replication factor C small subunit [Megavirus lba]
gi|444236792|gb|AGD92562.1| putative replication factor C small subunit [Megavirus lba]
Length = 364
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 141/214 (65%), Gaps = 1/214 (0%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPW+EKYRP+ + D ++ Q ++++ K + ++ HFLFYGPPGTGKTS ++A ++F
Sbjct: 9 VPWIEKYRPRKLKDFVQSQNLINLFKNSTAKGEMTHFLFYGPPGTGKTSVILAMGREIFK 68
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ-DGKPCPPFKIVILDEADSMTH 151
+ + R++E NASDDRGI +R+K+ A++ + + DG P +KI+ILDEADSMT
Sbjct: 69 EHFTTRVIEFNASDDRGINAVREKITNEAKKFVTQIVKPDGTIIPSYKIIILDEADSMTD 128
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALR +E+ + +TRFC ICNY+S I + SRC+ FK L + M+ +L+ I +
Sbjct: 129 EAQDALRVIIEQYSTTTRFCFICNYISKITDAIKSRCTAIYFKKLDDECMIDKLKEISTK 188
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245
ES+ + L T+++ S GDMR+AI LQ+ L
Sbjct: 189 ESMKLSNEILSTIIDVSNGDMRKAIMLLQNLKYL 222
>gi|189189278|ref|XP_001930978.1| replication factor C subunit 3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972584|gb|EDU40083.1| replication factor C subunit 3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 393
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 100/214 (46%), Positives = 139/214 (64%), Gaps = 4/214 (1%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DDV +++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 43 LPWVEKYRPNSLDDVEGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYG 102
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPCPPFKIVILDEADS 148
+ R+ +LELNASDDRGI V+R+++KTF+ Q A+ FK++ILDEAD+
Sbjct: 103 NKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFAAAPRAGDSSLATFKLIILDEADA 162
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL + + + +
Sbjct: 163 MTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVDKV 222
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
E E V A +LV S GDMRRA+ LQ+C
Sbjct: 223 IEDEKVNITQDATGSLVTLSKGDMRRALNVLQAC 256
>gi|15791090|ref|NP_280914.1| replication factor C small subunit [Halobacterium sp. NRC-1]
gi|169236842|ref|YP_001690042.1| replication factor C small subunit [Halobacterium salinarum R1]
gi|42559530|sp|Q9HN27.1|RFCS_HALSA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|226739141|sp|B0R7H7.1|RFCS_HALS3 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|10581691|gb|AAG20394.1| replication factor C small subunit [Halobacterium sp. NRC-1]
gi|167727908|emb|CAP14696.1| replication factor C small subunit [Halobacterium salinarum R1]
Length = 322
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 104/272 (38%), Positives = 159/272 (58%), Gaps = 14/272 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+ ++DV+ ++ L+ + DLPH LF GP GTGKT++ ++ +L+GD
Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDD 71
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+++ LELNASD+RGI V+RD++K FA+ + G N ++++ LDEAD++T AQ
Sbjct: 72 WQDNFLELNASDERGIDVVRDRIKDFARSSFGGHN--------YRVIFLDEADALTDDAQ 123
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L ++ + L+ I E E +
Sbjct: 124 SALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGL 183
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
++ LV + GDMRRAI LQ+ + G+ + E V +T IE ++
Sbjct: 184 EHTDDGIDALVYAADGDMRRAINALQAAS--ATGDSVNEETVYAITATARPEEIETMVTE 241
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFH 302
F ++DL+ + + DQ H
Sbjct: 242 ALGGDFAAARATLDDLLTNRGLAGGDIIDQVH 273
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
++ LV + GDMRRAI LQ+ + G+ + E V +T IE ++
Sbjct: 189 GIDALVYAADGDMRRAINALQAAS--ATGDSVNEETVYAITATARPEEIETMVTEALGGD 246
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F ++DL+ + + DQ H V + + +L++L E + R+ +GA+
Sbjct: 247 FAAARATLDDLLTNRGLAGGDIIDQVHRSVWE-FDVEEAAAVRLLDRLGEADYRIAEGAN 305
Query: 437 EYIQI 441
E +Q+
Sbjct: 306 ERVQL 310
>gi|310831184|ref|YP_003969827.1| putative replication factor C subunit [Cafeteria roenbergensis
virus BV-PW1]
gi|309386368|gb|ADO67228.1| putative replication factor C subunit [Cafeteria roenbergensis
virus BV-PW1]
Length = 314
Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 98/235 (41%), Positives = 146/235 (62%), Gaps = 12/235 (5%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N+ W EKYRPK ++++I Q E + V+K + +LPH +FYGPPGTGKTST++A C++
Sbjct: 2 NQLTLWNEKYRPKKLNEIIHQNETILVIKNLIDNHNLPHLIFYGPPGTGKTSTILAVCNE 61
Query: 90 LFGDMYR-ERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADS 148
+F D + R E NAS+DRGI+ IR+K+K + Q + P KI+ILDE D+
Sbjct: 62 IFPDEIKYNRCFEFNASNDRGIKFIREKIKKISNQKIKNYPN----TPHIKIIILDEVDT 117
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
+T +Q ALRR ME + +TRFCLICNY + +I+P+ SRC++FRFKP+ M +L I
Sbjct: 118 LTTDSQYALRRIMENSSSNTRFCLICNYPNKLIEPIISRCAQFRFKPIPTKIMEEKLTDI 177
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
+QE + ++E S GD+R +I+ LQ + NE + ++ G+I
Sbjct: 178 LKQEKIKNKKDITNLIIENSYGDLRLSISYLQRYYK-------YNESLNKIYGII 225
>gi|50304813|ref|XP_452362.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641495|emb|CAH01213.1| KLLA0C03718p [Kluyveromyces lactis]
Length = 320
Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 110/267 (41%), Positives = 162/267 (60%), Gaps = 12/267 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP + D++ ++ V L+ + ++PH + G PG GKT+++ H+L G
Sbjct: 9 LPWVEKYRPHLLKDIVGNEDTVQRLQTIAADGNMPHMIISGLPGIGKTTSIHCLAHELLG 68
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D Y + +LELNASDDRGI+V+R+++K FAQ+ + P KI+ILDEADSMT
Sbjct: 69 DAYSQAVLELNASDDRGIEVVRNQIKHFAQKKCT------LPAGKHKIIILDEADSMTSG 122
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME + +TRF CN + II+PL SRC+ R+ L + +L RL I + E
Sbjct: 123 AQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLTDEQVLKRLLEIIKLE 182
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPKPWI-EK 270
V LE ++ T+ GDMR+AI LQS G G+VN E+V ++ P P I ++
Sbjct: 183 DVQYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGFGLVNGENVFQIVDS-PHPLIVKR 238
Query: 271 LLKVDSFQVLEKYIEDLILEAYSATQL 297
+L S +Y+++L ++ YSA +
Sbjct: 239 MLLSGSLDESLQYLKELWVKGYSAVDI 265
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 67/123 (54%), Gaps = 6/123 (4%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPNPWI-EKLLKVDSF 378
LE ++ T+ GDMR+AI LQS G G+VN E+V ++ P+P I +++L S
Sbjct: 190 GLEAIIFTAEGDMRQAINNLQSTV---AGFGLVNGENVFQIVDS-PHPLIVKRMLLSGSL 245
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
+Y+++L ++ YSA + ++ + + + + +++++ + R+ +G +
Sbjct: 246 DESLQYLKELWVKGYSAVDIVITCFRVMKNLDEVKETVRLEMIKEIGFTHMRILEGVGTH 305
Query: 439 IQI 441
+Q+
Sbjct: 306 LQL 308
>gi|358368166|dbj|GAA84783.1| activator 1 subunit 3 [Aspergillus kawachii IFO 4308]
Length = 402
Score = 207 bits (527), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 111/253 (43%), Positives = 156/253 (61%), Gaps = 24/253 (9%)
Query: 13 DAPSSSK---TSVSTSGKTR----NKPV------PWVEKYRPKTIDDVIEQQEVVSVLKK 59
D PS + +S +T+GK + + PV PWVEKYRP T++DV Q++++ + K
Sbjct: 11 DVPSKNAIQFSSDNTNGKAKRVAADLPVEAQDNLPWVEKYRPNTLEDVSGHQDILATINK 70
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVK 118
+ LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++K
Sbjct: 71 FVEANRLPHLLLYGPPGTGKTSTILALARRIYGAKNMRQMVLELNASDDRGIDVVREQIK 130
Query: 119 TFAQQTASGFNQ---------DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTR 169
TFA T F+ +K++ILDEAD+MT AQ ALRR MEK T +TR
Sbjct: 131 TFAS-TKQIFSMAPSSSTSTSTSSNLASYKLIILDEADAMTATAQMALRRIMEKYTANTR 189
Query: 170 FCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSG 229
FC+I NY + L SRC++FRF PL E + + + E+E V +A+++LV S
Sbjct: 190 FCIIANYTHKLSPALLSRCTRFRFSPLKEADIRVLVDLVIEKEEVNIQPEAVDSLVRLSK 249
Query: 230 GDMRRAITCLQSC 242
GDMRRA+ LQ+C
Sbjct: 250 GDMRRALNVLQAC 262
>gi|448737973|ref|ZP_21720004.1| replication factor C small subunit [Halococcus thailandensis JCM
13552]
gi|445802557|gb|EMA52861.1| replication factor C small subunit [Halococcus thailandensis JCM
13552]
Length = 326
Score = 207 bits (527), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 172/309 (55%), Gaps = 18/309 (5%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
TSG + W+EKYRP + +V Q ++ L+ ++ DLPH LF GP G GKT++
Sbjct: 4 TSGSGGRGEI-WIEKYRPSALAEVAGQDDITERLRSYVAQDDLPHLLFSGPAGVGKTTSA 62
Query: 84 IAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
+A +++GD +RE LELNASD+RGI V+RD++K FA+ + G++ ++++ L
Sbjct: 63 MAIAREIYGDDWRENFLELNASDERGIDVVRDRIKNFARTSFGGYD--------YRVIFL 114
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD++T AQ+ALRRTME+ +TRF L CNY + II P+ SRC+ FRF PL E +
Sbjct: 115 DEADALTSDAQSALRRTMEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLPETAVAE 174
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
++ I +E + ++ LV + GDMR+AI LQ+ A GE + E V +T
Sbjct: 175 YVERIAGEEGIEITDDGVDALVYAADGDMRKAINGLQAAATT--GETVDEEAVYAITAAA 232
Query: 264 PKPWIEKLLK---VDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMLASSLSDKQKALF 319
IE +++ F ++DL+ + + DQ H A S +A
Sbjct: 233 RPEQIETMVQHAIGGDFTAARAKLDDLLTDWGLGGGDVIDQLH---RSAWSFELDDQATV 289
Query: 320 KALETLVET 328
+ LE + ET
Sbjct: 290 RLLERVGET 298
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDS 377
++ LV + GDMR+AI LQ+ A GE + E V +T IE +++
Sbjct: 191 GVDALVYAADGDMRKAINGLQAAATT--GETVDEEAVYAITAAARPEQIETMVQHAIGGD 248
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F ++DL+ + + DQ H S L D+ +LE++ E + R+ GA+
Sbjct: 249 FTAARAKLDDLLTDWGLGGGDVIDQLHRSAWS-FELDDQATVRLLERVGETDYRITQGAN 307
Query: 437 E 437
E
Sbjct: 308 E 308
>gi|383319632|ref|YP_005380473.1| replication factor C small subunit [Methanocella conradii HZ254]
gi|379321002|gb|AFC99954.1| replication factor C small subunit [Methanocella conradii HZ254]
Length = 322
Score = 207 bits (527), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 112/273 (41%), Positives = 164/273 (60%), Gaps = 15/273 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPKT+DDVI Q+++V LK + +LPH LF GPPG GKT+ +A +FGD
Sbjct: 7 WTEKYRPKTLDDVIGQEQIVRRLKSYVKSGNLPHLLFSGPPGVGKTACAVALAKDMFGDA 66
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++ +ELNASD+RGI+V+R+ +K FA+ + G + FK++ LDEAD++T AQ
Sbjct: 67 WQNNFIELNASDERGIEVVRNNIKNFARTSPLGEAR-------FKVIFLDEADALTADAQ 119
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ T + RF + CNY S II+P+ SRC+ +RF L + T ++ I + E +
Sbjct: 120 SALRRTMERYTATCRFIISCNYSSKIIEPIQSRCAIYRFGLLGPKDVETMVRRIEKGEHI 179
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP-WIEKLLK 273
LE L+ + GDMRRAI LQS + + V DV+ T I +P IE +LK
Sbjct: 180 KVSPDGLEALIYVARGDMRRAINALQSASTVTKH---VTADVVFETMSIARPKEIEDMLK 236
Query: 274 V---DSFQVLEKYIEDLILE-AYSATQLFDQFH 302
+ F ++DL+++ S + DQ +
Sbjct: 237 LALNGQFMDARNKLDDLLIKYGLSGNDVVDQIY 269
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 9/126 (7%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-WIEKLLKV---D 376
LE L+ + GDMRRAI LQS + + V DV+ T I P IE +LK+
Sbjct: 185 GLEALIYVARGDMRRAINALQSASTVTKH---VTADVVFETMSIARPKEIEDMLKLALNG 241
Query: 377 SFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
F ++DL+++ S + DQ + M A L + +++++ E + RL +GA
Sbjct: 242 QFMDARNKLDDLLIKYGLSGNDVVDQIYS-AMFALGLDEGVLVDLVDRIGEADFRLTEGA 300
Query: 436 SEYIQI 441
+E IQ+
Sbjct: 301 NERIQV 306
>gi|253745639|gb|EET01440.1| Replication factor C, sub 2 [Giardia intestinalis ATCC 50581]
Length = 351
Score = 207 bits (527), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 155/257 (60%), Gaps = 18/257 (7%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PW EK+RP +D ++ Q V K+C+ ++PH L YGP GTGKT+ + A H+ FG
Sbjct: 4 PWTEKHRPLALDRIVHQDHAVRAAKRCIESGNMPHMLLYGPAGTGKTTLVHAMMHEFFGP 63
Query: 94 -MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK---PCPPFKIVILDEADSM 149
+R R+ E NAS DRGI+++R+++K+ A+ + +D K PCP F++++LDEAD++
Sbjct: 64 RFWRARVNEFNASTDRGIKIVRERIKSIARTVIAVAPEDVKALYPCPDFQVIVLDEADAL 123
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T +QAALRR +E +++TRFC++CNY S II P+ SRC++F F PL + ++ RL IC
Sbjct: 124 TRESQAALRRIIEDYSETTRFCILCNYPSQIIAPIVSRCARFAFSPLPQTLIIDRLTAIC 183
Query: 210 -----------EQESVMCDFKALETLVETSGGDMRRAITCLQSCARL--KGGEGIVNEDV 256
EQ S++ AL + S GDMR AIT LQ+ + GE + E V
Sbjct: 184 YAEMHQLRNANEQLSLLAS-DALSEVAILSQGDMRAAITLLQTTVQFCQSMGEELSPEHV 242
Query: 257 LEVTGVIPKPWIEKLLK 273
+ G IP I L++
Sbjct: 243 RLLAGKIPDELIASLIE 259
>gi|395334442|gb|EJF66818.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 344
Score = 207 bits (527), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 125/335 (37%), Positives = 178/335 (53%), Gaps = 27/335 (8%)
Query: 14 APSSSKTSVSTSGKTRNKP--VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLF 71
+ S++K +G P +PWVEKYRP+ +DDV+ + + LK + PH +
Sbjct: 2 SSSAAKGKAPANGAASTLPYELPWVEKYRPQVLDDVVGNTDTIERLKVIARDGNCPHIII 61
Query: 72 YGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131
G PG GKT+++ HQL GD Y+E +LELNASD+RGI V+R+K+K FAQ+ +
Sbjct: 62 SGMPGIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIDVVRNKIKAFAQKKVT----- 116
Query: 132 GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
P KIVILDEADSMT AQ ALRRTME +TRF L CN + II+P+ SRC+
Sbjct: 117 -LPSGRHKIVILDEADSMTAGAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCAIL 175
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
R+ L + +L RL ICE E V + + LE L+ T+ GDMR+AI LQS G G
Sbjct: 176 RYSKLRDTEVLKRLLEICEMEKVQYNDEGLEALIFTAEGDMRQAINNLQSTW---SGFGF 232
Query: 252 VNEDVLEVTGVIPKP-----WIEKLLKVDSFQVLEKYIE---------DLILEAYSATQL 297
V+ D + P P I LK D +++ E D+++ + +
Sbjct: 233 VSGDNVFKVCDQPHPITVQAMIRSCLKGDIDAAMDRLNELWDQGYSAVDIVVTIFRVVKT 292
Query: 298 FDQFHDIVMLA--SSLSDKQKALFKALETLVETSG 330
FD+ + L + + + + TLV+ G
Sbjct: 293 FDEIPEYTKLEFIKEIGWTHMRILEGVGTLVQLGG 327
>gi|448315838|ref|ZP_21505477.1| replication factor C small subunit [Natronococcus jeotgali DSM
18795]
gi|445610597|gb|ELY64367.1| replication factor C small subunit [Natronococcus jeotgali DSM
18795]
Length = 330
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 175/314 (55%), Gaps = 17/314 (5%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
S+ + T K W+EKYRP+ +D++ + +V LK+ + DLPH +F GP GT
Sbjct: 2 SEADAEAAEPTPGKTEVWIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGT 61
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKT+ A +++ D +RE LELNASD RGI V+RD++K FA+ + G++
Sbjct: 62 GKTTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYDH------- 114
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L
Sbjct: 115 -RIIFLDEADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELT 173
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
E+ + +++ I +E + ++ L+ + GDMR+AI LQ+ A + GE + E V
Sbjct: 174 EDAVEAQIREIATEEGIEVTDDGVDALIYAADGDMRKAINGLQAAAVM--GEVVDEETVF 231
Query: 258 EVTGVIPKPWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMLASSLSD 313
+T +E ++ +D F +EDL+ E + + DQ H A
Sbjct: 232 AITSTARPEEVEAMVDRAIDGDFTAARAALEDLLTERGLAGGDVIDQLH---RSAWQFDI 288
Query: 314 KQKALFKALETLVE 327
+KA + LE L E
Sbjct: 289 PEKATVRLLERLGE 302
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDS- 377
++ L+ + GDMR+AI LQ+ A + GE + E V +T +E ++ +D
Sbjct: 196 GVDALIYAADGDMRKAINGLQAAAVM--GEVVDEETVFAITSTARPEEVEAMVDRAIDGD 253
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALI--LEKLAECNARLQDG 434
F +EDL+ E + + DQ H SA +KA + LE+L E + R+ +G
Sbjct: 254 FTAARAALEDLLTERGLAGGDVIDQLH---RSAWQFDIPEKATVRLLERLGEVDYRITEG 310
Query: 435 ASEYIQI 441
A+E +Q+
Sbjct: 311 ANERLQL 317
>gi|15678269|ref|NP_275384.1| replication factor C small subunit [Methanothermobacter
thermautotrophicus str. Delta H]
gi|42559322|sp|O26343.1|RFCS_METTH RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=MthRFC small subunit
gi|2621290|gb|AAB84747.1| replication factor C, small subunit [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 321
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 167/297 (56%), Gaps = 18/297 (6%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ +DD++ Q+ ++ LK+ + +P+ +F GP G GKT+ +A ++ G+
Sbjct: 7 PWVEKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALAREILGE 66
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R+ LELNASD RGI +R +K F + G PF+I+ LDE D+MT A
Sbjct: 67 YWRQNFLELNASDARGIDTVRTSIKNFCRLKPVG--------APFRIIFLDEVDNMTKDA 118
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME TK++ F L CNY S II P+ SRC+ FRF PL + ++ RL+YI E+E+
Sbjct: 119 QHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQIIKRLEYIAEKEN 178
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK 273
+ + ALET+V + GD+R+AI LQS A L GE I + +V + K++K
Sbjct: 179 LEYEAHALETIVYFAEGDLRKAINLLQSAASL--GEKITESSIYDVVSRARPKDVRKMIK 236
Query: 274 V----DSFQVLEKYIEDLILEAYSA----TQLFDQFHDIVMLASSLSDKQKALFKAL 322
+ + E ++L+ S TQ++ + + M D+ L A+
Sbjct: 237 TILDGKFMEARDMLREIMVLQGISGEDMVTQIYQELSRLAMEGEVDGDRYVGLIDAI 293
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 13/150 (8%)
Query: 302 HDIVMLASSLSDKQKALFKA--LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE 359
H I+ +++K+ ++A LET+V + GD+R+AI LQS A L GE I + +
Sbjct: 164 HQIIKRLEYIAEKENLEYEAHALETIVYFAEGDLRKAINLLQSAASL--GEKITESSIYD 221
Query: 360 VTGVIPNPWIEKLLKV----DSFQVLEKYIEDLILEAYSA----TQLFDQFHDIVMSASS 411
V + K++K + + E ++L+ S TQ++ + + M
Sbjct: 222 VVSRARPKDVRKMIKTILDGKFMEARDMLREIMVLQGISGEDMVTQIYQELSRLAMEGEV 281
Query: 412 LSDKQKALILEKLAECNARLQDGASEYIQI 441
D+ LI + + E + R+++GA+ IQ+
Sbjct: 282 DGDRYVGLI-DAIGEYDFRIREGANPRIQL 310
>gi|449550911|gb|EMD41875.1| hypothetical protein CERSUDRAFT_102269 [Ceriporiopsis subvermispora
B]
Length = 346
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 123/290 (42%), Positives = 167/290 (57%), Gaps = 21/290 (7%)
Query: 17 SSKTSVSTSGKTRNKP--VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGP 74
S+K +G N P +PWVEKYRP+ +DDV+ E + LK + PH + G
Sbjct: 6 SAKGKAPANGNASNVPYELPWVEKYRPQKLDDVVGNTETIERLKIIARDGNCPHIIISGM 65
Query: 75 PGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134
PG GKT+++ HQL GD Y+E +LELNASD+RGI V+R+K+KTFAQ+ +
Sbjct: 66 PGIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIDVVRNKIKTFAQKKVT-------- 117
Query: 135 CPPF--KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
PP KIVILDEADSMT AQ ALRRTME +TRF L CN + II+P+ SRC+ R
Sbjct: 118 LPPGRQKIVILDEADSMTSGAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCAILR 177
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
+ L + +L RL IC+ E V + L L+ T+ GDMR+AI LQS G G V
Sbjct: 178 YTKLRDTEVLQRLLEICQAEQVKYNDDGLTALIFTAEGDMRQAINNLQST---HSGFGFV 234
Query: 253 NED-VLEVTG----VIPKPWIEKLLKVDSFQVLEKYIEDLILEAYSATQL 297
+ D V +V ++ + I LK + +EK + +L + YSA +
Sbjct: 235 SGDNVFKVCDQPHPIVVQAMIGACLKGNIDGAMEK-LNELWDQGYSAVDI 283
>gi|21227923|ref|NP_633845.1| replication factor C small subunit [Methanosarcina mazei Go1]
gi|42559488|sp|Q8PVY4.1|RFCS_METMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|20906344|gb|AAM31517.1| replication factor C subunit [Methanosarcina mazei Go1]
Length = 338
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/276 (38%), Positives = 164/276 (59%), Gaps = 12/276 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
W+EKYRP ++ V Q+E + L ++ +LPH LF GPPG GKT++ ++ ++FG D
Sbjct: 15 WIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
++RE ELNASD+RGI ++R+K+K FA+ G PFKI+ LDEAD++T A
Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAKTAPMG-------GAPFKIIFLDEADALTSDA 127
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q+ALRRTMEK + + RF L CNY S II+P+ SRC+ +RF+ L++ + RL+YI +++
Sbjct: 128 QSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKEQD 187
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK 273
+ E L+ + GDMR+A+ LQ+ A + + I E + T I+ L++
Sbjct: 188 LSITDGGYEALIYVAQGDMRKAVNSLQAAAFIDVEKPISRETIYRTTATANPEEIKNLIE 247
Query: 274 V---DSFQVLEKYIEDLIL-EAYSATQLFDQFHDIV 305
+F+V K + L+ E S + Q + +V
Sbjct: 248 TALRGNFRVARKELNRLLYEEGLSGEDIVGQIYRVV 283
Score = 42.7 bits (99), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 323 ETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQ 379
E L+ + GDMR+A+ LQ+ A + + I E + T I+ L++ +F+
Sbjct: 196 EALIYVAQGDMRKAVNSLQAAAFIDVEKPISRETIYRTTATANPEEIKNLIETALRGNFR 255
Query: 380 VLEKYIEDLIL-EAYSATQLFDQFHDIVMSASS-------LSDKQKALILEKLAECNARL 431
V K + L+ E S + Q + +V + LS++ +++ + E + RL
Sbjct: 256 VARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMILDLGLSERDIVGLVDIIGETDFRL 315
Query: 432 QDGASEYIQI 441
+GASE IQ+
Sbjct: 316 TEGASEKIQL 325
>gi|294461526|gb|ADE76324.1| unknown [Picea sitchensis]
gi|294463669|gb|ADE77361.1| unknown [Picea sitchensis]
Length = 335
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/312 (38%), Positives = 178/312 (57%), Gaps = 25/312 (8%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N +PWVEKYRP + D++ Q+ +S L+ ++P+ + GPPGTGKT++++A H+
Sbjct: 14 NYDLPWVEKYRPSKVSDIVGNQDALSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHE 73
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEAD 147
L G Y+E ++ELNASDDRGI V+R+K+K FAQ+ + PP KI+ILDEAD
Sbjct: 74 LLGSNYKEGVIELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGRHKIIILDEAD 125
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
SMT AQ ALRRTME + STRF L CN + II+P+ SRC+ RF L++ +L RL
Sbjct: 126 SMTGGAQQALRRTMEIFSNSTRFALACNTSAKIIEPIQSRCAIVRFSKLSDQEILGRLMR 185
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP- 266
+ E E V + LE ++ T+ GDMR+A+ LQ A G + + E+V +V P P
Sbjct: 186 VVEAEKVAYVPEGLEAIIFTADGDMRQALNNLQ--ATYSGFQFVNQENVFKVCDQ-PHPL 242
Query: 267 ----WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKAL 322
++ +L+ +F +++L YSAT + I L + + + L
Sbjct: 243 HVKSMVQNVLE-GNFDEACSRLKNLYDLGYSATDI------ITTLFRVIKNYDMPEYLKL 295
Query: 323 ETLVETSGGDMR 334
E + ET MR
Sbjct: 296 EFIRETGFAHMR 307
>gi|289581577|ref|YP_003480043.1| replication factor C [Natrialba magadii ATCC 43099]
gi|448283016|ref|ZP_21474295.1| replication factor C small subunit [Natrialba magadii ATCC 43099]
gi|289531130|gb|ADD05481.1| Replication factor C [Natrialba magadii ATCC 43099]
gi|445574724|gb|ELY29212.1| replication factor C small subunit [Natrialba magadii ATCC 43099]
Length = 341
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 171/299 (57%), Gaps = 18/299 (6%)
Query: 8 GKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLP 67
G + + ++ + ST+G+T W+EKYRP+ +D++ + +V L++ + DLP
Sbjct: 8 GATEAETDTDTEVAESTAGRTE----VWIEKYRPEYLDEIKGHENIVPRLQRYVEQDDLP 63
Query: 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASG 127
H +F GP GTGKT+ A +++ D +RE LELNASD RGI V+RD++K FA+ + G
Sbjct: 64 HLMFAGPAGTGKTTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARASFGG 123
Query: 128 FNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSR 187
++ +I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SR
Sbjct: 124 YDH--------RIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSR 175
Query: 188 CSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG 247
C+ FRF L E + +++ I + + ++ LV + GDMR+AI LQ+ A +
Sbjct: 176 CAVFRFTQLTETAIEAQVREIAADQDIEVTDDGVDALVYAADGDMRKAINALQAAAVM-- 233
Query: 248 GEGIVNEDVLEVTGVIPKPWIEKLLK---VDSFQVLEKYIEDLILE-AYSATQLFDQFH 302
GE + E V +T +E++++ F +EDL+ + + + DQ H
Sbjct: 234 GETVDEETVFAITATARPEEVEEMVEQAIAGDFTAARASLEDLLTDRGLAGGDVIDQLH 292
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDSF 378
++ LV + GDMR+AI LQ+ A + GE + E V +T +E++++ F
Sbjct: 209 VDALVYAADGDMRKAINALQAAAVM--GETVDEETVFAITATARPEEVEEMVEQAIAGDF 266
Query: 379 QVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
+EDL+ + + + DQ H + +++ +LE+L E + R+ +GA+E
Sbjct: 267 TAARASLEDLLTDRGLAGGDVIDQLHRSAWE-FDIPEQETVRLLERLGEVDFRITEGANE 325
Query: 438 YIQI 441
+Q+
Sbjct: 326 RLQL 329
>gi|20089555|ref|NP_615630.1| replication factor C small subunit [Methanosarcina acetivorans C2A]
gi|42559497|sp|Q8TSX5.1|RFCS_METAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|19914469|gb|AAM04110.1| replication factor C, small subunit [Methanosarcina acetivorans
C2A]
Length = 338
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/276 (37%), Positives = 162/276 (58%), Gaps = 12/276 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
W+EKYRP ++ V Q E + LK ++ +LPH LF GPPG GKT++ ++ ++FG D
Sbjct: 15 WIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
++RE ELNASD+RGI ++R+K+K FA+ G PFKI+ LDEAD++T A
Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAKTAPIG-------GAPFKIIFLDEADALTADA 127
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q+ALRRTME+ + + RF L CNY S II+P+ SRC+ +RF+ L++ + RL+YI +
Sbjct: 128 QSALRRTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAGDQG 187
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK 273
+ E L+ + GDMR+A+ LQ+ A + + I E + T I+ L++
Sbjct: 188 LSITEGGYEALIYVAQGDMRKAVNSLQAAAFIDTDKSISRETIYRTTATANPEEIKNLIE 247
Query: 274 V---DSFQVLEKYIEDLIL-EAYSATQLFDQFHDIV 305
+F++ K + L+ E S + Q + +V
Sbjct: 248 TALRGNFRIARKELNRLLYEEGLSGEDIVGQIYRVV 283
Score = 43.9 bits (102), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 323 ETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQ 379
E L+ + GDMR+A+ LQ+ A + + I E + T I+ L++ +F+
Sbjct: 196 EALIYVAQGDMRKAVNSLQAAAFIDTDKSISRETIYRTTATANPEEIKNLIETALRGNFR 255
Query: 380 VLEKYIEDLIL-EAYSATQLFDQFHDIVMSASS-------LSDKQKALILEKLAECNARL 431
+ K + L+ E S + Q + +V + L+++ +++ + E + RL
Sbjct: 256 IARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMVLDLGLTERDIVALVDVIGETDFRL 315
Query: 432 QDGASEYIQI 441
+GASE IQ+
Sbjct: 316 TEGASEKIQL 325
>gi|332023241|gb|EGI63497.1| Replication factor C subunit 5 [Acromyrmex echinatior]
Length = 327
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/280 (41%), Positives = 166/280 (59%), Gaps = 16/280 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK++D++I + ++ + K + LPH L YGPPGTGKTST++A +L+
Sbjct: 10 LPWVEKYRPKSLDELISHETIIKTINKYIDENQLPHLLLYGPPGTGKTSTILACARKLYT 69
Query: 93 D-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
+ +LELNASDDRGI ++R ++ +FA T + + FK++ILDEAD+MT
Sbjct: 70 PAQFNSMVLELNASDDRGIGIVRGQILSFAS-TGTMYKS------AFKLIILDEADAMTI 122
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T + RFC+ICNY+S II L SRC++FRF PLA ++ RL ++ E
Sbjct: 123 DAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIIPRLNHVIEA 182
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW---- 267
E++ + L+ SGGDMR+ I+ LQS G + E+V G P P
Sbjct: 183 ENLKVTEDGKQALITLSGGDMRKVISVLQSTWFAYG--AVNEENVYNCVGH-PLPRDITS 239
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQ-LFDQFHDIVM 306
I L +S+ K I++L L A Q + + H V+
Sbjct: 240 IVNWLLNESYDTCYKKIQELKLNKGLALQDILTEVHSYVI 279
>gi|328874863|gb|EGG23228.1| replication factor C subunit [Dictyostelium fasciculatum]
Length = 368
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 118/294 (40%), Positives = 167/294 (56%), Gaps = 51/294 (17%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK++ ++I ++++ + K + LPH LFYGPPGTGKTST+ A +L+G
Sbjct: 21 LPWVEKYRPKSLKELISHEDIIDTITKLIDKNSLPHLLFYGPPGTGKTSTIQAVARKLYG 80
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D Y +LELNASDDRGI V+R+++K+FA + FN + FK++ILDEADSMT+A
Sbjct: 81 DNYSRMVLELNASDDRGIDVVREQIKSFA-GSMGIFNTN-----QFKLIILDEADSMTNA 134
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +E TK+TRFC+ICNYV +I L SRC++FRF L + + R++ I EQE
Sbjct: 135 AQTALRRVIETYTKTTRFCMICNYVGKLIPALQSRCTRFRFGRLGKPQSIKRIKEIVEQE 194
Query: 213 S---VMCD------------------------------FKALETLVETSGGDMRRAITCL 239
+M D ++E L E GDMR+++ L
Sbjct: 195 KYDIIMTDKLPINIFQTHTDCPPIHSNVMFRMNISDEAITSIELLAE---GDMRKSLNLL 251
Query: 240 QSCA-RLKGGEGIVNEDVLEVTGVIPKPWIEKLLKVDSFQVLEKYIEDLILEAY 292
QS + G I + D+ GV K ++ Q+L+ I + EAY
Sbjct: 252 QSVSMSSDDGVQITDADIYRCAGVPSKR--------ETVQILQWCIGEDFDEAY 297
>gi|212541869|ref|XP_002151089.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
marneffei ATCC 18224]
gi|210065996|gb|EEA20089.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
marneffei ATCC 18224]
Length = 397
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 99/214 (46%), Positives = 141/214 (65%), Gaps = 4/214 (1%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++D+V Q++++ + + + LPH L YGPPGTGKT+T++A +++G
Sbjct: 44 LPWVEKYRPSSLDEVQGHQDILATINRFIDSHRLPHLLLYGPPGTGKTTTILALARRIYG 103
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPCPPFKIVILDEADS 148
R+ +LELNASDDRGI V+R+++KTFA Q + FK++ILDEAD+
Sbjct: 104 SKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSVAAPAKENSLGAFKLIILDEADA 163
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR MEK T + RFC+I NY + L SRC++FRF PL E + + + +
Sbjct: 164 MTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEVDIRSLVDKV 223
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
E E+V +A+E+LV S GDMRRA+ LQ+C
Sbjct: 224 IEAENVRIQPQAIESLVRLSKGDMRRALNVLQAC 257
>gi|114050971|ref|NP_001040148.1| replication factor C (activator 1) 5 [Bombyx mori]
gi|87248211|gb|ABD36158.1| replication factor C (activator 1) 5 [Bombyx mori]
Length = 334
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/288 (39%), Positives = 172/288 (59%), Gaps = 16/288 (5%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
T G+T + +PWVEKYRPK +DD++ +++ + + + LPH LFYGPPGTGKTST+
Sbjct: 2 TVGET-GQNLPWVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTI 60
Query: 84 IAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
+A Q++ + +LELNASDDRGI ++R ++ +FA T + F K P K++I
Sbjct: 61 LACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFAS-TRTIF----KAGP--KLII 113
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT+ AQ ALRR +EK T++ RFC+ICNY+ II L SRC++FRF PL ++ ++
Sbjct: 114 LDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIV 173
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
RLQ I E V ++ L+ SGGDMR+ + LQS + ++V G
Sbjct: 174 PRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQST--WLAYRDVTEDNVYTCVGH 231
Query: 263 IPKPWIEK----LLKVDSFQVLEKYIEDL-ILEAYSATQLFDQFHDIV 305
+ I+ LL + F K I+DL I + + + + + H I+
Sbjct: 232 PLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTII 279
>gi|448664377|ref|ZP_21684180.1| replication factor C small subunit [Haloarcula amylolytica JCM
13557]
gi|445775022|gb|EMA26036.1| replication factor C small subunit [Haloarcula amylolytica JCM
13557]
Length = 325
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/209 (45%), Positives = 137/209 (65%), Gaps = 8/209 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DDV+ + +V LK +S DL H LF GP GTGKT+ A +L+G+
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGED 75
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI V+RD++K FA+ + G ++I+ LDEAD++T AQ
Sbjct: 76 WREHFLELNASDERGIDVVRDRIKNFARTSFGGV--------EYRIIFLDEADALTSDAQ 127
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + + RF L CNY S II P+ SRC+ FRF PLA++ + ++ I +E +
Sbjct: 128 SALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAEEGI 187
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCA 243
L+ LV + GDMR+AI LQ+ +
Sbjct: 188 ELTEDGLDALVYAADGDMRKAINGLQAAS 216
Score = 38.5 bits (88), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDSF 378
L+ LV + GDMR+AI LQ+ + G+ + V +T I +++ +D
Sbjct: 193 GLDALVYAADGDMRKAINGLQAAS--VSGDTVDESAVYAITSTARPEEIRTMVQSALDGD 250
Query: 379 QVLEKYIEDLIL--EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+ D +L E + + DQ H + + D+ +LE++ E + R+ GA+
Sbjct: 251 FTASRATLDRLLTEEGIAGGDIIDQLHRSIWEF-DIEDEAAVRVLERIGETDYRITRGAN 309
Query: 437 EYIQI 441
E +Q+
Sbjct: 310 ERVQL 314
>gi|402080324|gb|EJT75469.1| replication factor C subunit 3 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 410
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/266 (42%), Positives = 155/266 (58%), Gaps = 36/266 (13%)
Query: 13 DAPSSSKT---SVSTSGK--TRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCL 61
D P+ SK S T GK N PV PWVEKYRP ++ DV Q++++ + K +
Sbjct: 11 DVPAKSKDVTFSAETKGKRSAANLPVEAEDSLPWVEKYRPVSLADVSGHQDILATINKFV 70
Query: 62 SGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTF 120
LPH L YGPPGTGKTST++A +++G D R+ +LELNASDDRGI V+R+++KTF
Sbjct: 71 DSNRLPHLLLYGPPGTGKTSTILALARRIYGADNMRQMVLELNASDDRGIDVVREQIKTF 130
Query: 121 AQ------------------------QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAA 156
A +A + G +K++ILDEAD+MT+ AQ A
Sbjct: 131 ASTKQIFSMGPRNTAAAAAAAPSSSSSSAPSAARTGSTMALYKLIILDEADAMTNTAQMA 190
Query: 157 LRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMC 216
LRR MEK T +TRFC+I NY + L SRC++FRF PL E + + + ++ESV
Sbjct: 191 LRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEADIRVLVDRVVDEESVNV 250
Query: 217 DFKALETLVETSGGDMRRAITCLQSC 242
+A++ LV S GDMRRA+ LQ+C
Sbjct: 251 VPEAVDALVRLSRGDMRRALNVLQAC 276
>gi|448357101|ref|ZP_21545808.1| replication factor C small subunit [Natrialba chahannaoensis JCM
10990]
gi|445650274|gb|ELZ03200.1| replication factor C small subunit [Natrialba chahannaoensis JCM
10990]
Length = 339
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 168/291 (57%), Gaps = 18/291 (6%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
+ ++ + ST+G+T W+EKYRP+ +D++ + +V L++ + DLPH +F GP
Sbjct: 14 TDTEVAESTAGRTE----VWIEKYRPERLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPA 69
Query: 76 GTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
GTGKT+ A +++ D +RE LELNASD RGI V+RD++K FA+ + G++
Sbjct: 70 GTGKTTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARASFGGYDH----- 124
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF
Sbjct: 125 ---RIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTQ 181
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255
L E + +++ I + + ++ LV + GDMR+AI LQ+ A + GE + E
Sbjct: 182 LTETAIEAQVREIAADQDIEVTDDGVDALVYAADGDMRKAINALQAAAVM--GETVDEET 239
Query: 256 VLEVTGVIPKPWIEKLLK---VDSFQVLEKYIEDLILE-AYSATQLFDQFH 302
V +T +E+++ F +EDL+ + + + DQ H
Sbjct: 240 VFAITATARPEEVEQMVDQAIAGDFTAARASLEDLLTDRGLAGGDVIDQLH 290
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 7/124 (5%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDSF 378
++ LV + GDMR+AI LQ+ A + GE + E V +T +E+++ F
Sbjct: 207 VDALVYAADGDMRKAINALQAAAVM--GETVDEETVFAITATARPEEVEQMVDQAIAGDF 264
Query: 379 QVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
+EDL+ + + + DQ H + +++ +LE+L E + R+ +GA+E
Sbjct: 265 TAARASLEDLLTDRGLAGGDVIDQLHRSAWE-FDIPEQETVRLLEQLGEVDFRITEGANE 323
Query: 438 YIQI 441
+Q+
Sbjct: 324 RLQL 327
>gi|389751171|gb|EIM92244.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 343
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 179/326 (54%), Gaps = 29/326 (8%)
Query: 23 STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
+T+G +PWVEKYRP +DDV+ + + LK ++PH + G PG GKT++
Sbjct: 12 ATNGSDIPYELPWVEKYRPNILDDVVGNSDTIDRLKVIARDGNVPHLIISGMPGIGKTTS 71
Query: 83 MIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKI 140
+ HQL GD Y+E +LELNASD+RGI V+R+K+K FAQ+ + PP KI
Sbjct: 72 IHCLAHQLLGDAYKEGVLELNASDERGIDVVRNKIKAFAQKKVT--------LPPGRHKI 123
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
VILDEADSMT AQ ALRRTME + +TRFCL CN + II+P+ SRC+ R+ L +
Sbjct: 124 VILDEADSMTAGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDAE 183
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEV 259
+L RL IC+ E V + L L+ TS GDMR+AI LQS G G V+ D V +V
Sbjct: 184 ILKRLLEICDIEKVEYNDDGLTALIFTSEGDMRQAINNLQSTW---SGFGFVSSDNVFKV 240
Query: 260 TG----VIPKPWIEKLLKVDSFQVLEKYIE---------DLILEAYSATQLFDQFHDIVM 306
+I + I +K + +EK E D+I+ + + FD+ +
Sbjct: 241 CDQPHPIIVQTIIRACMKSNVDLAMEKLSELWGQGYSAVDIIVTIFRVVKTFDELPEYTK 300
Query: 307 LA--SSLSDKQKALFKALETLVETSG 330
L + + + + TL++ +G
Sbjct: 301 LEYIKEIGFTHMRILEGVGTLIQLAG 326
>gi|393218168|gb|EJD03656.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 338
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/316 (38%), Positives = 171/316 (54%), Gaps = 29/316 (9%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+T+DDV+ E + LK + PH + G PG GKT+++ HQ+ G
Sbjct: 17 LPWVEKYRPQTLDDVVGNSETIERLKVIARDGNCPHIIISGLPGIGKTTSIHCLAHQMLG 76
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
+ Y++ +LELNASD+RGI V+R+K+K FAQ+ + PP KIVILDEADSMT
Sbjct: 77 EAYKDGVLELNASDERGIDVVRNKIKAFAQKKVT--------LPPGRHKIVILDEADSMT 128
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME + +TRF L CN + II+P+ SRC+ R+ L + +L RL ICE
Sbjct: 129 SGAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRYAKLRDQEILKRLLEICE 188
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP---- 266
E V + L L+ TS GDMR+AI LQS G G V+ D + P P
Sbjct: 189 MEQVQYNDDGLTALIFTSEGDMRQAINNLQST---HSGFGFVSGDNVFKVCDQPHPILVQ 245
Query: 267 -WIEKLLKVDSFQVLEKYIE---------DLILEAYSATQLFDQFHDIVMLA--SSLSDK 314
I +K D +EK E D+++ + + FD+ + L +
Sbjct: 246 AMIRACMKGDINTTMEKLTELWDQGYSAVDIVVTIFRVVKTFDELPEYTKLEYIKEIGFT 305
Query: 315 QKALFKALETLVETSG 330
+ + + TLV+ G
Sbjct: 306 HMRILEGVGTLVQLGG 321
Score = 39.7 bits (91), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----WIEKLLKV 375
L L+ TS GDMR+AI LQS G G V+ D + P+P I +K
Sbjct: 198 GLTALIFTSEGDMRQAINNLQST---HSGFGFVSGDNVFKVCDQPHPILVQAMIRACMKG 254
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
D +EK E L + YSA + +V + L + K ++++ + R+ +G
Sbjct: 255 DINTTMEKLTE-LWDQGYSAVDIVVTIFRVVKTFDELPEYTKLEYIKEIGFTHMRILEGV 313
Query: 436 SEYIQILDLGSIVIKAN 452
+Q+ L + + K N
Sbjct: 314 GTLVQLGGLAARLCKMN 330
>gi|213402449|ref|XP_002171997.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces
japonicus yFS275]
gi|212000044|gb|EEB05704.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces
japonicus yFS275]
Length = 344
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 152/250 (60%), Gaps = 12/250 (4%)
Query: 12 KDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLF 71
+ A SS+ T + +PWVEKYRP +DD++ ++ ++ LK ++PH +
Sbjct: 2 QGAGSSASTGYTGQKVATTYELPWVEKYRPVVLDDIVGNEDTIARLKVIARDGNMPHMII 61
Query: 72 YGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131
G PG GKT++++ HQL G YRE +LELNASD+RGI V+R+K+K FAQ+ +
Sbjct: 62 SGMPGIGKTTSVLCLAHQLLGSAYREGVLELNASDERGIDVVRNKIKGFAQKKVN----- 116
Query: 132 GKPCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189
PP KIVILDEADSMT AQ ALRRTME + +TRF L CN + II+P+ SRC+
Sbjct: 117 ---LPPGRHKIVILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCA 173
Query: 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249
R+ L E + RL IC+ ESV + L+ T+ GDMR+AI LQS + G +
Sbjct: 174 ILRYSRLNEQQIQKRLSEICKAESVSITDDGMAALIMTAEGDMRQAINNLQST--VAGFD 231
Query: 250 GIVNEDVLEV 259
+ +E+V +V
Sbjct: 232 LVNSENVFKV 241
>gi|222478820|ref|YP_002565057.1| replication factor C small subunit [Halorubrum lacusprofundi ATCC
49239]
gi|222451722|gb|ACM55987.1| Replication factor C [Halorubrum lacusprofundi ATCC 49239]
Length = 327
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 147/239 (61%), Gaps = 12/239 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD- 93
W+EKYRP+++DD+ Q+ +V L+ + D+PH LF GP GTGKT+ A Q++GD
Sbjct: 18 WIEKYRPQSLDDIHGQEAIVERLQSYIEQDDIPHLLFGGPAGTGKTTAATAIARQVYGDD 77
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD RGI V+RD++K FA+ S F D F+IV LDEADS+T A
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFAR---SSFGGD------FRIVFLDEADSLTDEA 128
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
QAALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL++ + + + I E
Sbjct: 129 QAALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDAAVAAQTREIAAAEG 188
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
+ + ++ LV + GDMRRAI LQ+ A GE + E V +T IE ++
Sbjct: 189 IEVTDEGVDALVYAADGDMRRAINSLQAAATT--GEIVDEEAVYAITATARPEEIESMV 245
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+ ++ LV + GDMRRAI LQ+ A GE + E V +T IE ++
Sbjct: 194 EGVDALVYAADGDMRRAINSLQAAATT--GEIVDEEAVYAITATARPEEIESMVTNALHG 251
Query: 377 SFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
F ++ L+ E + + DQ H V LS+++ ++E++ E + R+ +GA
Sbjct: 252 DFTRARATLDTLLTETGMAGGDVIDQLHRSVWE-FDLSEREAVALMERIGEADYRIAEGA 310
Query: 436 SEYIQ 440
+E +Q
Sbjct: 311 NEQVQ 315
>gi|308810180|ref|XP_003082399.1| Replication factor C 2 (ISS) [Ostreococcus tauri]
gi|116060867|emb|CAL57345.1| Replication factor C 2 (ISS) [Ostreococcus tauri]
Length = 354
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 177/290 (61%), Gaps = 24/290 (8%)
Query: 21 SVSTSGKTRNKPV---PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
+++ K + P+ PW+EKYRPKT+DD++ + V ++ ++ +P+ +F GPPG
Sbjct: 6 ALAAGAKAQTAPIDTLPWLEKYRPKTLDDIVGNDDAVDRMRSMVASGFMPNLMFCGPPGC 65
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKTS + L GD Y++ +LE+NASD+RGI V+R+K+K FAQ+ + PP
Sbjct: 66 GKTSAIGVLSRALLGDKYKDAVLEMNASDERGIDVVRNKIKMFAQKKVT--------LPP 117
Query: 138 --FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
KIVILDEAD+MT AAQ ALRRTME + +TRFCL CN +I+P+ SRC+ RF
Sbjct: 118 GRTKIVILDEADAMTTAAQQALRRTMEIFSATTRFCLACNTSDKVIEPIQSRCAIVRFVK 177
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255
L + +L RL + E+E V K LE +V T+ GDMR+A+ LQS A+ G G+++E+
Sbjct: 178 LTDEQVLKRLMTVIEREKVAYVPKGLEAIVFTADGDMRQALNNLQSTAQ---GFGLIDEE 234
Query: 256 VLEVTGVIPKPWIEKLLKVDSFQVLEKYIEDLILEAYSATQ-LFDQFHDI 304
V V +P + SF +L++ I+D AY+ + L+D+ + +
Sbjct: 235 --NVFRVCDQPHPNIVRDALSF-ILQENIDD----AYARIKSLYDKGYSV 277
>gi|448354529|ref|ZP_21543285.1| replication factor C small subunit [Natrialba hulunbeirensis JCM
10989]
gi|445637417|gb|ELY90567.1| replication factor C small subunit [Natrialba hulunbeirensis JCM
10989]
Length = 339
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 170/299 (56%), Gaps = 18/299 (6%)
Query: 8 GKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLP 67
G + + ++ + ST+G+T W+EKYRP+ +D++ + +V L++ + DLP
Sbjct: 6 GATEAETDTDTEVAESTAGRTE----VWIEKYRPEYLDEIKGHENIVPRLQRYVEQDDLP 61
Query: 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASG 127
H +F GP GTGKT+ A +++ D +RE LELNASD RGI V+RD++K FA+ + G
Sbjct: 62 HLMFAGPAGTGKTTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARASFGG 121
Query: 128 FNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSR 187
++ +I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SR
Sbjct: 122 YDH--------RIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSR 173
Query: 188 CSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG 247
C+ FRF L E + +++ I + + ++ LV + GDMR+AI LQ+ A +
Sbjct: 174 CAVFRFTQLTETAIEAQVREIAADQDIEVTDDGVDALVYAADGDMRKAINALQAAAVM-- 231
Query: 248 GEGIVNEDVLEVTGVIPKPWIEKLLK---VDSFQVLEKYIEDLILE-AYSATQLFDQFH 302
GE + E V +T +E+++ F +EDL+ + + + DQ H
Sbjct: 232 GETVDEETVFAITATARPEEVEEMVDQAIAGDFTAARASLEDLLTDRGLAGGDVIDQLH 290
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 7/124 (5%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDSF 378
++ LV + GDMR+AI LQ+ A + GE + E V +T +E+++ F
Sbjct: 207 VDALVYAADGDMRKAINALQAAAVM--GETVDEETVFAITATARPEEVEEMVDQAIAGDF 264
Query: 379 QVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
+EDL+ + + + DQ H + +K+ +LE+L E + R+ +GA+E
Sbjct: 265 TAARASLEDLLTDRGLAGGDVIDQLHRSAWE-FDIPEKETVRLLERLGEVDFRITEGANE 323
Query: 438 YIQI 441
+Q+
Sbjct: 324 RLQL 327
>gi|371945111|gb|AEX62932.1| putative replication factor C small subunit [Moumouvirus Monve]
Length = 346
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/318 (38%), Positives = 170/318 (53%), Gaps = 22/318 (6%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
S +T + + K + K +PW EKYRP+ ID +I +++ LK + LPH LF+GP
Sbjct: 2 SYYETVIDKTEKGKEKNIPWTEKYRPRDIDQIISHKQITRSLKNFIKSKTLPHLLFFGPS 61
Query: 76 GTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
G+GKTST+ +L+G ILELNAS++RGI+ +R K+K F S F
Sbjct: 62 GSGKTSTIKCCAAKLYGSYLNCMILELNASNERGIETVRTKIKNFVSNKNSIF------L 115
Query: 136 PP-----FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190
PP FK+VILDE DSMT AQ LR+T+EK + +TRFCLICN + I L SRC+
Sbjct: 116 PPELRNIFKLVILDEIDSMTVEAQGMLRQTIEKNSSTTRFCLICNDIDKINLALQSRCAL 175
Query: 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG 250
FRF PL N M RL+ IC+ E+V ++ ++ S GDMR AI LQ L +
Sbjct: 176 FRFSPLNNNEMHKRLKDICDIENVKYSTGVIDAVINISKGDMRSAINTLQH-VNLTVNDL 234
Query: 251 IVNEDVLEVTGVIPKPWIEKLLKV---------DSFQVLEKYIEDLILEAYSATQLFDQF 301
I DV +++G I ++ + D + +EK I ++ + L +
Sbjct: 235 ITVNDVYKISGHCMPELILEIFNILLQLSKKKKDLDKYVEKIINIVVENNITIFNLLSEL 294
Query: 302 HDIVMLASSLSDKQKALF 319
+IV L S L D QK
Sbjct: 295 KNIV-LDSDLLDDQKIFL 311
>gi|325186526|emb|CCA21065.1| replication factor C subunit 5 putative [Albugo laibachii Nc14]
Length = 354
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/281 (41%), Positives = 160/281 (56%), Gaps = 25/281 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP +DD+I + +VS + + + LPH LFYGPPGTGKTS +IA +++G
Sbjct: 33 PWVEKYRPSRMDDIIAHKGIVSTINQLVEKQKLPHLLFYGPPGTGKTSMIIAIARKIYGK 92
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+ +LELNASDDRGI V+R+++K FA T F+ K++ILDEADSMT+ A
Sbjct: 93 HFSSMVLELNASDDRGIDVVRNQIKEFA-GTKKLFSSGA------KLIILDEADSMTNDA 145
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q +LRR +EK TK TRFCLICNYVS II L SRC +FRF PL + R++ I + E
Sbjct: 146 QFSLRRVIEKYTKHTRFCLICNYVSKIIPALQSRCMRFRFAPLGVTQVGDRVKQIRDLEK 205
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP------- 266
+ + L++ GDMRR + LQ+ + VNE+ + + P P
Sbjct: 206 IDLTDGGFDALMQLGKGDMRRILNILQAASL---AYATVNEENVYLCTGNPVPEDIAAIC 262
Query: 267 ---W----IEKLLKVDSFQVLEKY-IEDLILEAYSATQLFD 299
W E + K + Q+ + Y D++ E Y T D
Sbjct: 263 HSLWNDSFAEAVSKCQAIQMTKGYATTDIMKEVYHNTTEVD 303
>gi|448726685|ref|ZP_21709077.1| replication factor C small subunit [Halococcus morrhuae DSM 1307]
gi|445793731|gb|EMA44302.1| replication factor C small subunit [Halococcus morrhuae DSM 1307]
Length = 326
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/309 (36%), Positives = 172/309 (55%), Gaps = 18/309 (5%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
TSG + W+EKYRP + +V Q ++ L+ ++ DLPH LF GP G GKT++
Sbjct: 4 TSGSGGRGEI-WIEKYRPSALAEVAGQDDITERLRSYVAQDDLPHLLFSGPAGVGKTTSA 62
Query: 84 IAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
+A +++GD +R+ LELNASD+RGI V+RD++K FA+ + G++ ++++ L
Sbjct: 63 MAIAREIYGDDWRDNFLELNASDERGIDVVRDRIKNFARTSFGGYD--------YRVIFL 114
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD++T AQ+ALRRTME+ +TRF L CNY + II P+ SRC+ FRF PL E +
Sbjct: 115 DEADALTSDAQSALRRTMEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLPETAVAE 174
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
++ I +E + ++ LV + GDMR+AI LQ+ A GE + E V +T
Sbjct: 175 YVEQIAGEEGIEITDDGVDALVYAADGDMRKAINGLQAAATT--GETVDEEAVYAITAAA 232
Query: 264 PKPWIEKLLK---VDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMLASSLSDKQKALF 319
IE +++ F ++DL+ + + DQ H A S +A
Sbjct: 233 RPEEIETMVQHAIGGDFTAARAKLDDLLTDWGLGGGDVIDQLH---RSAWSFELDDQATV 289
Query: 320 KALETLVET 328
+ LE + ET
Sbjct: 290 RLLERVGET 298
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDS 377
++ LV + GDMR+AI LQ+ A GE + E V +T IE +++
Sbjct: 191 GVDALVYAADGDMRKAINGLQAAATT--GETVDEEAVYAITAAARPEEIETMVQHAIGGD 248
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F ++DL+ + + DQ H S L D+ +LE++ E + R+ GA+
Sbjct: 249 FTAARAKLDDLLTDWGLGGGDVIDQLHRSAWS-FELDDQATVRLLERVGETDYRITQGAN 307
Query: 437 E 437
E
Sbjct: 308 E 308
>gi|336252796|ref|YP_004595903.1| Replication factor C small subunit [Halopiger xanaduensis SH-6]
gi|335336785|gb|AEH36024.1| Replication factor C small subunit [Halopiger xanaduensis SH-6]
Length = 336
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/283 (37%), Positives = 165/283 (58%), Gaps = 18/283 (6%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
T GKT W+EKYRP+ +D++ ++++ LK + DLPH +F GP GTGKT+
Sbjct: 18 TPGKTE----VWIEKYRPERLDEIKGHEDIIPRLKNYVEQDDLPHLMFAGPAGTGKTTAA 73
Query: 84 IAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A +++ D +RE LELNASD RGI V+RD++K FA+ + G++ +I+ L
Sbjct: 74 QAIAREIYDDDWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYDH--------RIIFL 125
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L +N +
Sbjct: 126 DEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDNAIEA 185
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
+++ I + + ++ LV + GDMR+AI LQ+ A + GE + E V +T
Sbjct: 186 QVREIAADQDIEVTDDGVDALVYAADGDMRKAINALQAAAVM--GETVDEETVFAITATA 243
Query: 264 PKPWIEKLL--KVDS-FQVLEKYIEDLILE-AYSATQLFDQFH 302
+E+++ +D F +EDL+ + + + DQ H
Sbjct: 244 RPEEVEEMVGHAIDGDFTAARAALEDLLTDRGLAGGDVIDQLH 286
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 11/127 (8%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL--KVDS- 377
++ LV + GDMR+AI LQ+ A + GE + E V +T +E+++ +D
Sbjct: 202 GVDALVYAADGDMRKAINALQAAAVM--GETVDEETVFAITATARPEEVEEMVGHAIDGD 259
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALI--LEKLAECNARLQDG 434
F +EDL+ + + + DQ H SA ++A + LE+L E + R+ +G
Sbjct: 260 FTAARAALEDLLTDRGLAGGDVIDQLH---RSAWEFDIPEQATVRLLERLGEVDYRITEG 316
Query: 435 ASEYIQI 441
A+E +Q+
Sbjct: 317 ANERLQL 323
>gi|158292645|ref|XP_314028.3| AGAP005144-PA [Anopheles gambiae str. PEST]
gi|157017089|gb|EAA09454.3| AGAP005144-PA [Anopheles gambiae str. PEST]
Length = 327
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/214 (46%), Positives = 142/214 (66%), Gaps = 16/214 (7%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL-- 90
+PWVEKYRP ++D+I +E++ + K + LPH LFYGPPGTGKTST++A QL
Sbjct: 9 LPWVEKYRPAKLNDLISHEEIIGTINKFIKEEQLPHLLFYGPPGTGKTSTILACARQLYK 68
Query: 91 ---FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
FG M +LELNASDDRGI ++R ++ FA T + F +K++ILDEAD
Sbjct: 69 PQSFGSM----VLELNASDDRGINIVRGQILDFAS-TRTIFKGG------YKLIILDEAD 117
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT+ AQ ALRR +EK T++ RFC+ICNY+S II + SRC++FRF PL+ + +L RL++
Sbjct: 118 AMTNDAQNALRRIIEKYTENVRFCIICNYLSKIIPAIQSRCTRFRFAPLSPDQILPRLEH 177
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
+ E E + + L+ +GGDMR+ + LQS
Sbjct: 178 VVEAEGIDVTDDGKKALMTLAGGDMRKVLNVLQS 211
>gi|310795633|gb|EFQ31094.1| replication factor C [Glomerella graminicola M1.001]
Length = 393
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 109/249 (43%), Positives = 150/249 (60%), Gaps = 19/249 (7%)
Query: 13 DAPSSSKTSVSTSGK-----TRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCL 61
D P S + S+ K N PV PWVEKYRP ++ DV Q+++ + K +
Sbjct: 11 DVPVSKDITFSSDAKQGKRSAANLPVEAEDSLPWVEKYRPVSLADVSGHQDILVTINKFV 70
Query: 62 SGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTF 120
LPH L YGPPGTGKTST++A +++G + R+ +LELNASDDRGI V+R+++KTF
Sbjct: 71 DSNRLPHLLLYGPPGTGKTSTILALARRIYGAENMRQMVLELNASDDRGIDVVREQIKTF 130
Query: 121 AQQ-------TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLI 173
A ++ G +K++ILDEAD+MT+ AQ ALRR MEK T +TRFC+I
Sbjct: 131 ASTKQIFTLGPSAKSGGGGGGMASYKLIILDEADAMTNTAQMALRRIMEKYTVNTRFCII 190
Query: 174 CNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMR 233
NY + L SRC++FRF PL E + + + E+E V +A E LV+ S GDMR
Sbjct: 191 ANYSHKLSPALLSRCTRFRFSPLKERDIRVLVDKVIEEEHVKIMPEATEALVKLSKGDMR 250
Query: 234 RAITCLQSC 242
RA+ LQ+C
Sbjct: 251 RALNVLQAC 259
>gi|344213231|ref|YP_004797551.1| replication factor C small subunit [Haloarcula hispanica ATCC
33960]
gi|343784586|gb|AEM58563.1| replication factor C small subunit [Haloarcula hispanica ATCC
33960]
Length = 407
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 96/209 (45%), Positives = 137/209 (65%), Gaps = 8/209 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DDV+ + +V LK +S DL H LF GP GTGKT+ A +L+G+
Sbjct: 98 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGED 157
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI V+RD++K FA+ + G ++I+ LDEAD++T AQ
Sbjct: 158 WREHFLELNASDERGIDVVRDRIKNFARTSFGGVE--------YRIIFLDEADALTSDAQ 209
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + + RF L CNY S II P+ SRC+ FRF PLA++ + ++ I +E +
Sbjct: 210 SALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAEEDI 269
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCA 243
L+ LV + GDMR+AI LQ+ +
Sbjct: 270 ELTEDGLDALVYAADGDMRKAINGLQAAS 298
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDSF 378
L+ LV + GDMR+AI LQ+ + G+ + V +T I +++ +D
Sbjct: 275 GLDALVYAADGDMRKAINGLQAAS--VSGDTVDESAVYAITSTARPEEIRTMVQSALDGD 332
Query: 379 QVLEKYIEDLIL--EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+ D +L E + + DQ H + + D+ +LE++ E + R+ GA+
Sbjct: 333 FTASRATLDRLLTEEGIAGGDIIDQLHRSIWEF-DIDDEAAVRVLERIGETDYRITRGAN 391
Query: 437 EYIQI 441
E +Q+
Sbjct: 392 ERVQL 396
>gi|342888810|gb|EGU88029.1| hypothetical protein FOXB_01512 [Fusarium oxysporum Fo5176]
Length = 1431
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 138/213 (64%), Gaps = 6/213 (2%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM- 94
VEKYRP T+DDV Q++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 623 VEKYRPNTLDDVSGHQDILATINKFIDQNRLPHLLLYGPPGTGKTSTILALARRIYGAAN 682
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQ-----QTASGFNQDGKPCPPFKIVILDEADSM 149
R+ +LELNASDDRGI V+R+++KTFA + G FK+++LDEAD+M
Sbjct: 683 MRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMGGASARSGNSMAGFKLIVLDEADAM 742
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + + +
Sbjct: 743 TSTAQMALRRIMEKYTTNTRFCIIANYSHKLSPALLSRCTRFRFSPLKEGDIRVLVDKVV 802
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
E+E V +A++ LV+ S GDMRRA+ LQ+C
Sbjct: 803 EEEHVRIGGEAVDALVKLSKGDMRRALNVLQAC 835
>gi|73669094|ref|YP_305109.1| replication factor C small subunit [Methanosarcina barkeri str.
Fusaro]
gi|110287811|sp|Q46C63.1|RFCS_METBF RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|72396256|gb|AAZ70529.1| replication factor C small subunit [Methanosarcina barkeri str.
Fusaro]
Length = 334
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 155/260 (59%), Gaps = 11/260 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
W+EKYRP +D V Q+E + LK ++ +LPH LF GPPG GKT++ ++ ++FG D
Sbjct: 11 WIEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 70
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
++RE ELNASD+RGI V+R K+K FA+ G FKI+ LDEAD++T A
Sbjct: 71 LWRENFTELNASDERGIDVVRTKIKNFAKTAPMG-------GAEFKIIFLDEADALTSDA 123
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q+ALRRTME+ + + RF L CNY S II+P+ SRC+ FRF+ L++ + RL+YI + +
Sbjct: 124 QSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKRLEYIAKDQV 183
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK 273
+ E LV S GDMR+A+ LQ+ A ++ + I + T I L++
Sbjct: 184 LSITEDGYEALVYVSQGDMRKAVNSLQAAAFVEPNKSISRGTIYRTTATANPEDIRNLIE 243
Query: 274 V---DSFQVLEKYIEDLILE 290
+F+V K + L+ E
Sbjct: 244 TALRGNFRVARKELNRLLYE 263
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 323 ETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----WIEKLLKVDS 377
E LV S GDMR+A+ LQ+ A ++ + I + T NP IE L+ +
Sbjct: 192 EALVYVSQGDMRKAVNSLQAAAFVEPNKSISRGTIYRTTAT-ANPEDIRNLIETALR-GN 249
Query: 378 FQVLEKYIEDLIL-EAYSATQLFDQFHDIVMSASS-------LSDKQKALILEKLAECNA 429
F+V K + L+ E S + Q + + + LS+K+ +++ + E +
Sbjct: 250 FRVARKELNRLLYEEGLSGEDIVGQIYRAISEMDNRMILDLGLSEKRIVELVDIIGEIDF 309
Query: 430 RLQDGASEYIQI 441
RL +GA+E IQ+
Sbjct: 310 RLTEGATEKIQL 321
>gi|443896635|dbj|GAC73979.1| replication factor C, subunit RFC2 [Pseudozyma antarctica T-34]
Length = 374
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 115/256 (44%), Positives = 157/256 (61%), Gaps = 12/256 (4%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
S +S + SG T +PWVEKYRP +DDV+ ++ + LK + + PH L G PG
Sbjct: 7 SGSSAAPSG-TMGYELPWVEKYRPLNLDDVVGNKDTIDRLKVIQNDGNCPHLLISGLPGI 65
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKT++++ L GD Y+E +LELNASD+RG+ V+R+K+KTFAQ+ S P
Sbjct: 66 GKTTSVLCLARALLGDAYKEGVLELNASDERGVDVVRNKIKTFAQKKVS------LPAGR 119
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
KIVILDEADSMT AAQ ALRRTME + +TRFC CN + II+P+ SRC+ R+ +
Sbjct: 120 HKIVILDEADSMTPAAQQALRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYGKVK 179
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDV 256
+ +L RL ICE E V + L ++ T+ GDMR+AI LQS G G VN E+V
Sbjct: 180 DEQILKRLLEICEMEKVEYTDEGLAAIIFTTEGDMRQAINNLQSTWT---GLGFVNPENV 236
Query: 257 LEVTGVIPKPWIEKLL 272
+V P P++ + L
Sbjct: 237 FKVCDQ-PHPFLIRAL 251
>gi|384497070|gb|EIE87561.1| hypothetical protein RO3G_12272 [Rhizopus delemar RA 99-880]
Length = 259
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 155/243 (63%), Gaps = 9/243 (3%)
Query: 96 RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
+ R+LELNASD+RGI VIR+KVK F++ T + G PCPP+KI+ILDEADSMT AQ+
Sbjct: 2 KSRVLELNASDERGINVIREKVKDFSRSTLTT-KVSGYPCPPYKIIILDEADSMTKDAQS 60
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
ALRRTME + +TRFC+ICNYVS II+P+TSRC+KFRF L + RL+ IC QE V
Sbjct: 61 ALRRTMETYSTTTRFCIICNYVSRIIEPITSRCAKFRFTSLPVEDLEQRLEMICLQEGVQ 120
Query: 216 CDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIE---KLL 272
++TL++ SGGD+R+AIT LQS LK E + V E+ G IP I+ +L
Sbjct: 121 LAPNTMQTLIQCSGGDLRKAITFLQSGYNLK--ETVTPRMVHEMAGRIPDELIDDCRELW 178
Query: 273 KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVE---TS 329
+EK ++ ++++ YSA L Q H+ ++ SLS QK+ + + V+
Sbjct: 179 ASQDVNEIEKVVKRIMMDGYSAENLLSQLHEKMIADDSLSTLQKSNISQIMSTVDIDLIQ 238
Query: 330 GGD 332
GGD
Sbjct: 239 GGD 241
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 74/128 (57%), Gaps = 5/128 (3%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIE---KLLKVD 376
++TL++ SGGD+R+AIT LQS LK E + V E+ G IP+ I+ +L
Sbjct: 124 NTMQTLIQCSGGDLRKAITFLQSGYNLK--ETVTPRMVHEMAGRIPDELIDDCRELWASQ 181
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+EK ++ ++++ YSA L Q H+ +++ SLS QK+ I + ++ + L G
Sbjct: 182 DVNEIEKVVKRIMMDGYSAENLLSQLHEKMIADDSLSTLQKSNISQIMSTVDIDLIQGGD 241
Query: 437 EYIQILDL 444
E++Q+L+L
Sbjct: 242 EHLQVLNL 249
>gi|297837097|ref|XP_002886430.1| hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp.
lyrata]
gi|297332271|gb|EFH62689.1| hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp.
lyrata]
Length = 334
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 122/308 (39%), Positives = 177/308 (57%), Gaps = 25/308 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP + D++ ++ VS L+ ++P+ + GPPGTGKT++++A H+L G
Sbjct: 17 PWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 76
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMTH 151
Y+E +LELNASDDRGI V+R+K+K FAQ+ + PP K+VILDEADSMT
Sbjct: 77 NYKEAVLELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGRHKVVILDEADSMTS 128
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRT+E + STRF L CN S II+P+ SRC+ RF L++ +L RL + E
Sbjct: 129 GAQQALRRTIEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQQILGRLLVVVEA 188
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW-IEK 270
E+V + LE ++ T+ GDMR+A+ LQ A G + E+V +V P P ++
Sbjct: 189 ENVPYVPEGLEAIIFTADGDMRQALNNLQ--ATFSGFRFVNQENVFKVCDQ-PHPLHVKN 245
Query: 271 LLKVDSFQVLEKYIEDLILEAYSATQLFDQFHD----IVMLASSLSDKQKALFKALETLV 326
+++ VLE +D + QL+D + I L + + A + LE +
Sbjct: 246 IVR----NVLESKFDD---ACHGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMK 298
Query: 327 ETSGGDMR 334
ET MR
Sbjct: 299 ETGFAHMR 306
>gi|159041324|ref|YP_001540576.1| ATPase central domain-containing protein [Caldivirga maquilingensis
IC-167]
gi|157920159|gb|ABW01586.1| AAA ATPase central domain protein [Caldivirga maquilingensis
IC-167]
Length = 318
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 136/205 (66%), Gaps = 7/205 (3%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY 95
+E++RP + D+++Q+ V L + + DLPH LFYGPPG GKT+ +A +L+GD +
Sbjct: 1 MERFRPVRLVDLVDQEGVKVGLMEFVRRGDLPHLLFYGPPGVGKTTAALALARELYGDSW 60
Query: 96 RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
R +LELNASD+RGI VIR+KVK FA+ +G P P FK+VILDEAD+MT AQ
Sbjct: 61 RSSVLELNASDERGIDVIREKVKEFARTIPTG------PVP-FKLVILDEADNMTSDAQQ 113
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
ALRR ME +TRF L+ NY+S II+P+ SRC+ FRF PL + ++ RL+ I ++ V
Sbjct: 114 ALRRIMEMYASTTRFILLANYISGIIEPIQSRCAIFRFNPLPKEAVIERLRQIAKETGVE 173
Query: 216 CDFKALETLVETSGGDMRRAITCLQ 240
LE + E S GDMR+AI LQ
Sbjct: 174 VTEDGLEAIWEVSQGDMRKAINTLQ 198
>gi|449301028|gb|EMC97039.1| hypothetical protein BAUCODRAFT_147217 [Baudoinia compniacensis
UAMH 10762]
Length = 397
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 99/215 (46%), Positives = 143/215 (66%), Gaps = 5/215 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++ DV ++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 46 LPWVEKYRPASLSDVSGHHDILATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYG 105
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGK-PCPPFKIVILDEAD 147
+ R+ +LELNASDDRGI+V+R+++KTF+ Q A F++ + FK++ILDEAD
Sbjct: 106 NRNMRQMVLELNASDDRGIEVVREQIKTFSSTKQIFAGSFDKTQQDSIANFKLIILDEAD 165
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL + + +
Sbjct: 166 AMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDADIRHLVDK 225
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ +E V A+++LV S GDMRRA+ LQ+C
Sbjct: 226 VIVEEGVNIAPDAVDSLVSLSKGDMRRALNVLQAC 260
>gi|209880093|ref|XP_002141486.1| replication factor C, subunit 5 [Cryptosporidium muris RN66]
gi|209557092|gb|EEA07137.1| replication factor C, subunit 5, putative [Cryptosporidium muris
RN66]
Length = 371
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 96/227 (42%), Positives = 145/227 (63%), Gaps = 17/227 (7%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP++++++I ++++ + K ++ LPH LF+GPPGTGKTST+ A ++G
Sbjct: 7 LPWVEKYRPESLEELISHKDIIGTIGKFINSGQLPHLLFHGPPGTGKTSTIHALSKFIYG 66
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN---------QDGKPCPPF----- 138
+ ++ +LELNASDDRGI V+RD +K+FA+ ++ + + G F
Sbjct: 67 EKKKQMVLELNASDDRGINVVRDAIKSFAESASTNMDCFEDIQTRGESGTTNLIFNRNFW 126
Query: 139 ---KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
K++ILDEAD MT AQ ALRR +EK ++ RFC+ICNYV+ II L SRC++FRF P
Sbjct: 127 RNVKLIILDEADMMTPVAQMALRRILEKYSEHVRFCIICNYVNKIIPALQSRCTRFRFSP 186
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
L+ N M ++ I + E + + L+E + GDMR+ + LQSC
Sbjct: 187 LSINEMENKILVISKAEGIYTSKDGITALIEAARGDMRKVLNILQSC 233
>gi|358391339|gb|EHK40743.1| hypothetical protein TRIATDRAFT_127338 [Trichoderma atroviride IMI
206040]
Length = 391
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 110/244 (45%), Positives = 155/244 (63%), Gaps = 15/244 (6%)
Query: 14 APSSSKTSVSTSGKTR----NKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCLSG 63
APS+ T + + K + N PV PWVEKYRP T++DV Q++++ + K +
Sbjct: 14 APSADITFSAEAAKGKRSAANLPVEAEDSLPWVEKYRPVTLEDVSGHQDILATINKFVEQ 73
Query: 64 ADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ 122
LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++KTFA
Sbjct: 74 NRLPHLLLYGPPGTGKTSTILALARRIYGVSNMRQMVLELNASDDRGIDVVREQIKTFAS 133
Query: 123 Q----TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS 178
+ G FK++ILDEAD+MT+ AQ ALRR MEK T +TRFC+I NY
Sbjct: 134 TKQIFSMGGGASKSNSIAGFKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAH 193
Query: 179 CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITC 238
+ L SRC++FRF PL E + ++ + E+E+V +A++ LV+ S GDMRRA+
Sbjct: 194 KLSPALLSRCTRFRFSPLKEGDIRVLVEKVVEEENVKIQGEAVDALVKLSKGDMRRALNV 253
Query: 239 LQSC 242
LQ+C
Sbjct: 254 LQAC 257
>gi|452840856|gb|EME42793.1| hypothetical protein DOTSEDRAFT_80413 [Dothistroma septosporum
NZE10]
Length = 401
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 145/240 (60%), Gaps = 13/240 (5%)
Query: 16 SSSKTSVSTSGKTRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHF 69
SS+ T N PV PWVEKYRP ++ DV ++++ + K + LPH
Sbjct: 25 SSNNTDSKGKRSAANLPVELEDNLPWVEKYRPNSLSDVSGHHDILATINKFVDTNRLPHL 84
Query: 70 LFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFA---QQTA 125
L YGPPGTGKTST +A +++G+ R+ +LELNASDDRGI V+R+++KTF+ Q A
Sbjct: 85 LLYGPPGTGKTSTALAMARRIYGNKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFA 144
Query: 126 SGF---NQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQ 182
F N FK++ILDEAD+MT AQ ALRR MEK T +TRFC+I NY +
Sbjct: 145 GSFDKSNNQNDTIAHFKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSP 204
Query: 183 PLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
L SRC++FRF PL + + + + +E V +A ++LV S GDMRRA+ LQ+C
Sbjct: 205 ALLSRCTRFRFSPLKDADIRQLVDKVISEEVVNIAPEAADSLVTLSKGDMRRALNVLQAC 264
>gi|448445134|ref|ZP_21590189.1| replication factor C small subunit [Halorubrum saccharovorum DSM
1137]
gi|445685440|gb|ELZ37794.1| replication factor C small subunit [Halorubrum saccharovorum DSM
1137]
Length = 328
Score = 205 bits (522), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 146/239 (61%), Gaps = 12/239 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
W+EKYRP+++DD+ Q+E+V L+ + D+PH LF GP G GKT+ A Q++G D
Sbjct: 18 WIEKYRPQSLDDIHGQEEIVERLQSYIEQDDIPHLLFSGPAGVGKTTAATAIARQVYGED 77
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD RGI V+RD++K FA+ + G F+IV LDEADS+T A
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG---------DFRIVFLDEADSLTDDA 128
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL++ + + + I E
Sbjct: 129 QSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVAAQTREIAAAEG 188
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
+ + ++ LV + GDMRRAI LQ+ A G+ + E V +T IE ++
Sbjct: 189 IEVTDEGVDALVYAADGDMRRAINSLQAAATT--GDVVDEEAVYAITATARPEEIESMV 245
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---D 376
+ ++ LV + GDMRRAI LQ+ A G+ + E V +T IE ++
Sbjct: 194 EGVDALVYAADGDMRRAINSLQAAATT--GDVVDEEAVYAITATARPEEIESMVTNALEG 251
Query: 377 SFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
F ++ L+ E + + DQ H V LS+++ ++E++ E + R+ +GA
Sbjct: 252 DFSRARATLDTLLTETGMAGGDVIDQLHRSVWE-FDLSEREAVALMERIGEADYRIAEGA 310
Query: 436 SEYIQ 440
+E +Q
Sbjct: 311 NEQVQ 315
>gi|410720678|ref|ZP_11360031.1| DNA polymerase III, gamma/tau subunit [Methanobacterium sp.
Maddingley MBC34]
gi|410600389|gb|EKQ54917.1| DNA polymerase III, gamma/tau subunit [Methanobacterium sp.
Maddingley MBC34]
Length = 321
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 101/226 (44%), Positives = 145/226 (64%), Gaps = 10/226 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+D+V+ Q ++ LK+ ++ A++P+ +F GP G GKT+T IA + G+
Sbjct: 4 PWVEKYRPQTLDEVVGQDHIIQRLKQYINEANMPNLMFTGPAGVGKTTTAIALAKAMLGE 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+++ LELNASD RGI+ +R +K+F + A G PF+I+ LDE D+MT A
Sbjct: 64 YWKQNFLELNASDARGIETVRKDIKSFCRLKAMG--------APFRIIFLDEVDNMTKDA 115
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME TK++ F L CNY S II P+ SRC+ FRF P+ + ++ RL+ I + E+
Sbjct: 116 QHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFAPIKGHQVIKRLEVIAKAEN 175
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 259
V LE++V + GDMRRA+ LQS A + GE + E V EV
Sbjct: 176 VNYAPGTLESIVYFAEGDMRRAVNILQSTASM--GEEVNEETVHEV 219
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 64/128 (50%), Gaps = 11/128 (8%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV----DS 377
LE++V + GDMRRA+ LQS A + GE + E V EV + +++ + D
Sbjct: 183 LESIVYFAEGDMRRAVNILQSTASM--GEEVNEETVHEVVSKAKPKDVRRIVNLALDGDF 240
Query: 378 FQVLEKYIEDLILEAYSA----TQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQD 433
+ E ++++ S TQ++ + + M +S + ++E + E + R+++
Sbjct: 241 MGARDLLREVMVVQGTSGEDMVTQVYQEVSKMAMD-DLISSEDYIKLVEHIGEYDFRIRE 299
Query: 434 GASEYIQI 441
GA+ IQ+
Sbjct: 300 GANPRIQL 307
>gi|383620026|ref|ZP_09946432.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
gi|448696276|ref|ZP_21697837.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
gi|445783964|gb|EMA34788.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
Length = 330
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 116/326 (35%), Positives = 181/326 (55%), Gaps = 22/326 (6%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
S+ + T K W+EKYRP+ +D++ + +V LK+ + DLPH +F GP GT
Sbjct: 2 SEADAEAAEPTPGKTEVWIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGT 61
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKT+ A +++ D +RE LELNASD RGI V+RD++K FA+ + G++
Sbjct: 62 GKTTAAQAIAREIYDDDWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYDH------- 114
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L
Sbjct: 115 -RIIFLDEADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELT 173
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
++ +++ I +E + ++ LV + GDMR+AI LQ+ A + GE + E V
Sbjct: 174 DDATEAQVREIAAEEGIEVTDDGVDALVFAADGDMRKAINGLQAAAVM--GETVDEETVF 231
Query: 258 EVTGVIPKPWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMLASSLSD 313
+T +E++++ +D F +EDL+ + + + DQ H A
Sbjct: 232 AITSTARPEEVEEMVEHAIDGDFTAARAALEDLLTDRGLAGGDVIDQLH---RSAWQFDI 288
Query: 314 KQKALFKALETLVE-----TSGGDMR 334
++A + LE L E T+G + R
Sbjct: 289 PERATVRLLERLGEVDYRITTGANER 314
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 65/127 (51%), Gaps = 11/127 (8%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDS- 377
++ LV + GDMR+AI LQ+ A + GE + E V +T +E++++ +D
Sbjct: 196 GVDALVFAADGDMRKAINGLQAAAVM--GETVDEETVFAITSTARPEEVEEMVEHAIDGD 253
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALI--LEKLAECNARLQDG 434
F +EDL+ + + + DQ H SA ++A + LE+L E + R+ G
Sbjct: 254 FTAARAALEDLLTDRGLAGGDVIDQLH---RSAWQFDIPERATVRLLERLGEVDYRITTG 310
Query: 435 ASEYIQI 441
A+E +Q+
Sbjct: 311 ANERLQL 317
>gi|406605842|emb|CCH42728.1| Replication factor C subunit 4 [Wickerhamomyces ciferrii]
Length = 324
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 118/271 (43%), Positives = 160/271 (59%), Gaps = 16/271 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DV +E +S LK ++PH + G PG GKT+++ H+L G
Sbjct: 9 LPWVEKYRPSKLEDVTGNEETISRLKLISQDGNMPHLIISGLPGIGKTTSIHCLAHELLG 68
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D Y +LELNASDDRGI V+R+K+K FAQ+ S P KI+ILDEADSMT
Sbjct: 69 DAYSNAVLELNASDDRGIDVVRNKIKQFAQKKVS------LPQGRHKIIILDEADSMTPG 122
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME + +TRF CN + II+PL SRC+ R+ L++ +L RL I + E
Sbjct: 123 AQQALRRTMEIYSNTTRFAFACNVSNKIIEPLQSRCAILRYTKLSDEEVLKRLLDIIKFE 182
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPKPWIEK- 270
V LE L+ T+ GDMR+AI LQS G G VN E+V ++ P P I K
Sbjct: 183 KVEYSNDGLEALIFTAEGDMRQAINNLQSTV---AGFGFVNGENVFKIVDS-PHPLIIKK 238
Query: 271 -LLKVDSFQVLEK---YIEDLILEAYSATQL 297
+L+V + ++K Y+ L + YSA +
Sbjct: 239 MILEVVQNKDIDKSLFYLNGLWEKGYSAIDI 269
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 10/127 (7%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPNPWIEK--LLKVDS 377
LE L+ T+ GDMR+AI LQS G G VN E+V ++ P+P I K +L+V
Sbjct: 190 GLEALIFTAEGDMRQAINNLQSTV---AGFGFVNGENVFKIVDS-PHPLIIKKMILEVVQ 245
Query: 378 FQVLEK---YIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
+ ++K Y+ L + YSA + +V + + + + I++++ + R+ +G
Sbjct: 246 NKDIDKSLFYLNGLWEKGYSAIDIASTSFKVVKNLYEIDESDRLEIMKEIGITHMRVLEG 305
Query: 435 ASEYIQI 441
Y+Q+
Sbjct: 306 VGSYLQL 312
>gi|433589372|ref|YP_007278868.1| DNA polymerase III, gamma/tau subunit [Natrinema pellirubrum DSM
15624]
gi|448335506|ref|ZP_21524650.1| replication factor C small subunit [Natrinema pellirubrum DSM
15624]
gi|433304152|gb|AGB29964.1| DNA polymerase III, gamma/tau subunit [Natrinema pellirubrum DSM
15624]
gi|445616896|gb|ELY70508.1| replication factor C small subunit [Natrinema pellirubrum DSM
15624]
Length = 330
Score = 205 bits (522), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 110/289 (38%), Positives = 164/289 (56%), Gaps = 14/289 (4%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
S+ + T K W+EKYRP+ + D+ ++V L+ + DLPH LF GP GT
Sbjct: 2 SEADAEAAEPTPGKTEVWIEKYRPELLADIKGHTDIVPRLENYVEQDDLPHLLFAGPAGT 61
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKT+ A +++ D +RE LELNASD RGI V+RD++K FA+ + G++
Sbjct: 62 GKTTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYSH------- 114
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L
Sbjct: 115 -RIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELT 173
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
EN + +++ I E + ++ LV + GDMR+AI LQ+ A + GE + E V
Sbjct: 174 ENAIEAQVREIAANEEIDVTDDGVDALVFAADGDMRKAINGLQAAAVM--GETVDEETVF 231
Query: 258 EVTGVIPKPWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFH 302
+T +E +++ +D F +EDL+ E + + DQ H
Sbjct: 232 AITATARPEEVEAMVEHAIDGDFTAARAALEDLLTERGLAGGDVIDQLH 280
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 11/127 (8%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDS- 377
++ LV + GDMR+AI LQ+ A + GE + E V +T +E +++ +D
Sbjct: 196 GVDALVFAADGDMRKAINGLQAAAVM--GETVDEETVFAITATARPEEVEAMVEHAIDGD 253
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALI--LEKLAECNARLQDG 434
F +EDL+ E + + DQ H SA ++A + LE+L E + R+ +G
Sbjct: 254 FTAARAALEDLLTERGLAGGDVIDQLH---RSAWEFDIPERATVRLLERLGEVDYRITEG 310
Query: 435 ASEYIQI 441
A+E +Q+
Sbjct: 311 ANERLQL 317
>gi|451854539|gb|EMD67832.1| hypothetical protein COCSADRAFT_112005 [Cochliobolus sativus
ND90Pr]
Length = 394
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 144/216 (66%), Gaps = 6/216 (2%)
Query: 33 VPW--VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
+PW VEKYRP ++DDV +++++ + K + LPH L YGPPGTGKTST++A ++
Sbjct: 42 LPWYVVEKYRPASLDDVEGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRI 101
Query: 91 FGDM-YRERILELNASDDRGIQVIRDKVKTFA--QQTASGFNQDGKPC-PPFKIVILDEA 146
+G+ R+ +LELNASDDRGI+V+R+++KTF+ +Q S + G FK++ILDEA
Sbjct: 102 YGNKNMRQMVLELNASDDRGIEVVREQIKTFSSTKQIFSAAPKTGDSSLATFKLIILDEA 161
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL + + +
Sbjct: 162 DAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRHLVD 221
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E V A ++LV S GDMRRA+ LQ+C
Sbjct: 222 KVIEEEKVNITQDATDSLVTLSKGDMRRALNVLQAC 257
>gi|323303129|gb|EGA56931.1| Rfc4p [Saccharomyces cerevisiae FostersB]
Length = 323
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/275 (41%), Positives = 159/275 (57%), Gaps = 21/275 (7%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
KT + +PWVEKYRP+ + D++ +E + L++ ++PH + G PG GKT+++
Sbjct: 3 KTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCL 62
Query: 87 CHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILD 144
H+L G Y + +LELNASDDRGI V+R+++K FAQ+ PP KIVILD
Sbjct: 63 AHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLH--------LPPGKHKIVILD 114
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EADSMT AQ ALRRTME + STRF CN + II+PL SRC+ R+ L++ +L R
Sbjct: 115 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKR 174
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP 264
L I + E V LE ++ T+ GDMR+AI LQS G G+VN D + P
Sbjct: 175 LLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNADNVFKIVDSP 231
Query: 265 KPWIEKLLKV-----DSFQVLEKYIEDLILEAYSA 294
P I K + + DS Q+L DL + YS+
Sbjct: 232 HPLIVKKMLLASNLEDSIQILR---TDLWKKGYSS 263
Score = 47.8 bits (112), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV----- 375
LE ++ T+ GDMR+AI LQS G G+VN D + P+P I K + +
Sbjct: 190 GLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNADNVFKIVDSPHPLIVKKMLLASNLE 246
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
DS Q+L DL + YS+ + + + + + + + +++++ + R+ +G
Sbjct: 247 DSIQILR---TDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMMKEIGLTHMRILEGV 303
Query: 436 SEYIQILDLGSIVIKANKTA 455
Y+Q+ + + + K N A
Sbjct: 304 GTYLQLASMLAKIHKLNNKA 323
>gi|190407255|gb|EDV10522.1| replication factor C subunit 4 [Saccharomyces cerevisiae RM11-1a]
Length = 323
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/275 (41%), Positives = 159/275 (57%), Gaps = 21/275 (7%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
KT + +PWVEKYRP+ + D++ +E + L++ ++PH + G PG GKT+++
Sbjct: 3 KTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCL 62
Query: 87 CHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILD 144
H+L G Y + +LELNASDDRGI V+R+++K FAQ+ PP KIVILD
Sbjct: 63 AHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLH--------LPPGKHKIVILD 114
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EADSMT AQ ALRRTME + STRF CN + II+PL SRC+ R+ L++ +L R
Sbjct: 115 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKR 174
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP 264
L I + E V LE ++ T+ GDMR+AI LQS G G+VN D + P
Sbjct: 175 LLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNADNVFKIVDSP 231
Query: 265 KPWIEKLLKV-----DSFQVLEKYIEDLILEAYSA 294
P I K + + DS Q+L DL + YS+
Sbjct: 232 HPLIVKKMLLASNLEDSIQILR---TDLWKKGYSS 263
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 11/140 (7%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV----- 375
LE ++ T+ GDMR+AI LQS G G+VN D + P+P I K + +
Sbjct: 190 GLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNADNVFKIVDSPHPLIVKKMLLASNLE 246
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
DS Q+L DL + YS+ + + + + + + + +++++ + R+ +G
Sbjct: 247 DSIQILR---TDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGV 303
Query: 436 SEYIQILDLGSIVIKANKTA 455
Y+Q+ + + + K NK A
Sbjct: 304 GTYLQLASMLAKIHKLNKKA 323
>gi|6324478|ref|NP_014547.1| replication factor C subunit 4 [Saccharomyces cerevisiae S288c]
gi|730503|sp|P40339.1|RFC4_YEAST RecName: Full=Replication factor C subunit 4; Short=Replication
factor C4; AltName: Full=Activator 1 37 kDa subunit
gi|499704|gb|AAA34970.1| 37 kDa subunit [Saccharomyces cerevisiae]
gi|600464|emb|CAA58185.1| orf 00923 [Saccharomyces cerevisiae]
gi|841468|gb|AAC49063.1| Rfc4p [Saccharomyces cerevisiae]
gi|1419942|emb|CAA99106.1| RFC4 [Saccharomyces cerevisiae]
gi|151945540|gb|EDN63781.1| replication factor C subunit 4 [Saccharomyces cerevisiae YJM789]
gi|207341418|gb|EDZ69479.1| YOL094Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256271406|gb|EEU06467.1| Rfc4p [Saccharomyces cerevisiae JAY291]
gi|259149392|emb|CAY86196.1| Rfc4p [Saccharomyces cerevisiae EC1118]
gi|285814797|tpg|DAA10690.1| TPA: replication factor C subunit 4 [Saccharomyces cerevisiae
S288c]
gi|323335629|gb|EGA76912.1| Rfc4p [Saccharomyces cerevisiae Vin13]
gi|323346696|gb|EGA80980.1| Rfc4p [Saccharomyces cerevisiae Lalvin QA23]
gi|349581076|dbj|GAA26234.1| K7_Rfc4p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763163|gb|EHN04693.1| Rfc4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296734|gb|EIW07836.1| Rfc4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 323
Score = 205 bits (521), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 115/275 (41%), Positives = 159/275 (57%), Gaps = 21/275 (7%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
KT + +PWVEKYRP+ + D++ +E + L++ ++PH + G PG GKT+++
Sbjct: 3 KTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCL 62
Query: 87 CHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILD 144
H+L G Y + +LELNASDDRGI V+R+++K FAQ+ PP KIVILD
Sbjct: 63 AHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLH--------LPPGKHKIVILD 114
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EADSMT AQ ALRRTME + STRF CN + II+PL SRC+ R+ L++ +L R
Sbjct: 115 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKR 174
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP 264
L I + E V LE ++ T+ GDMR+AI LQS G G+VN D + P
Sbjct: 175 LLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNADNVFKIVDSP 231
Query: 265 KPWIEKLLKV-----DSFQVLEKYIEDLILEAYSA 294
P I K + + DS Q+L DL + YS+
Sbjct: 232 HPLIVKKMLLASNLEDSIQILR---TDLWKKGYSS 263
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV----- 375
LE ++ T+ GDMR+AI LQS G G+VN D + P+P I K + +
Sbjct: 190 GLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNADNVFKIVDSPHPLIVKKMLLASNLE 246
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
DS Q+L DL + YS+ + + + + + + + +++++ + R+ +G
Sbjct: 247 DSIQILR---TDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGV 303
Query: 436 SEYIQILDLGSIVIKANKTA 455
Y+Q+ + + + K N A
Sbjct: 304 GTYLQLASMLAKIHKLNNKA 323
>gi|302851817|ref|XP_002957431.1| DNA replication factor C complex subunit 2 [Volvox carteri f.
nagariensis]
gi|300257235|gb|EFJ41486.1| DNA replication factor C complex subunit 2 [Volvox carteri f.
nagariensis]
Length = 335
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 104/229 (45%), Positives = 150/229 (65%), Gaps = 12/229 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PW+EKYRP+ I +++ E V+ L+ ++P+ + GPPGTGKT++++ HQL G
Sbjct: 19 LPWLEKYRPQYIHEIVGNMEAVARLQVIAEEGNMPNVILAGPPGTGKTTSILCLAHQLLG 78
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
Y+E +LELNASDDRGI V+R+K+K FAQ+ + PP KIVILDEADSMT
Sbjct: 79 PTYKEAVLELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGRHKIVILDEADSMT 130
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME + +TRF L CN S II+P+ SRC+ R+ +++ +L+RL+ +CE
Sbjct: 131 AGAQQALRRTMEIYSNTTRFALACNQSSKIIEPIQSRCAIVRYSRISDVDILSRLRLVCE 190
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 259
+E V + + +E L+ T+ GDMR+A+ LQ A G I E+V +V
Sbjct: 191 KEGVTYNDEGMEALIFTADGDMRQALNNLQ--ATHSGFGFISQENVFKV 237
>gi|323307063|gb|EGA60346.1| Rfc4p [Saccharomyces cerevisiae FostersO]
Length = 382
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 119/287 (41%), Positives = 164/287 (57%), Gaps = 22/287 (7%)
Query: 15 PSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGP 74
P K S+ S KT + +PWVEKYRP+ + D++ +E + L++ ++PH + G
Sbjct: 51 PEDIKKSLIMS-KTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGM 109
Query: 75 PGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134
PG GKT+++ H+L G Y + +LELNASDDRGI V+R+++K FAQ+
Sbjct: 110 PGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIXVVRNQIKHFAQKKLH-------- 161
Query: 135 CPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
PP KIVILDEADSMT AQ ALRRTME + STRF CN + II+PL SRC+ R
Sbjct: 162 LPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILR 221
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
+ L++ +L RL I + E V LE ++ T+ GDMR+AI LQS G G+V
Sbjct: 222 YSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHGLV 278
Query: 253 NEDVLEVTGVIPKPWIEKLLKV-----DSFQVLEKYIEDLILEAYSA 294
N D + P P I K + + DS Q+L DL + YS+
Sbjct: 279 NADNVFKIVDSPHPLIVKKMLLASNLEDSIQILR---TDLWKKGYSS 322
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV----- 375
LE ++ T+ GDMR+AI LQS G G+VN D + P+P I K + +
Sbjct: 249 GLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNADNVFKIVDSPHPLIVKKMLLASNLE 305
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
DS Q+L DL + YS+ + + + + + + + +++++ + R+ +G
Sbjct: 306 DSIQILR---TDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMMKEIGLTHMRILEGV 362
Query: 436 SEYIQILDLGSIVIKANKTA 455
Y+Q+ + + + K N A
Sbjct: 363 GTYLQLASMLAKIHKLNNKA 382
>gi|156083805|ref|XP_001609386.1| replication factor C subunit 4 [Babesia bovis T2Bo]
gi|154796637|gb|EDO05818.1| replication factor C subunit 4 [Babesia bovis]
Length = 306
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 115/296 (38%), Positives = 176/296 (59%), Gaps = 18/296 (6%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP + DVI EV L+ ++P+ L GPPGTGKT++++ H++ G+
Sbjct: 6 WIEKYRPGILKDVIGNPEVTRRLEVIAREGNMPNLLLCGPPGTGKTTSILCLAHEMLGNH 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMTHA 152
++ +LELNASDDRG+ V+R +K FA+++ PP KI+ILDE DSMT A
Sbjct: 66 FKNAVLELNASDDRGVDVVRGAIKNFAKKSVV--------LPPNKHKIIILDEVDSMTEA 117
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR ME +K+TRF L CN + II+P+ SRC+ R++PL + +LTRL +IC++E
Sbjct: 118 AQQALRRIMEIYSKTTRFALACNQSTKIIEPIQSRCAVIRYEPLQDEMILTRLIHICKEE 177
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
+V +E L+ T+ GDMRRA+ LQ+ + G I +++V +V V I KLL
Sbjct: 178 NVQYTNDGMEALLFTANGDMRRAVNNLQNVS--SGYNLITSQNVYKVCDVPSPELIRKLL 235
Query: 273 K--VDS-FQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETL 325
+ +D ++ + EDL+ +S FD + + +L + L + L+T+
Sbjct: 236 QDCLDGQWRPAHEKAEDLLALGHSP---FDILMTVRSVLKTLKAPEHILCEFLKTI 288
>gi|257076223|ref|ZP_05570584.1| replication factor C small subunit [Ferroplasma acidarmanus fer1]
Length = 318
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 116/304 (38%), Positives = 172/304 (56%), Gaps = 20/304 (6%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP + DVI ++ ++ L + ++PH +F GP GTGKTST IA LFGD
Sbjct: 5 WTEKYRPSKLSDVIGEKGNINRLNAYVKDKNIPHLIFAGPQGTGKTSTAIALAISLFGDS 64
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++E +ELNAS+DRGI +IRD +K FA+ S N G FKI+ LDEAD +T AQ
Sbjct: 65 WKENFMELNASNDRGIDIIRDNIKNFAKIRPS--NDLG-----FKIIFLDEADHLTGDAQ 117
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTME +TRF CNY S II P+ SRC RFKP+ +M RL+ I ++E+
Sbjct: 118 AALRRTMEMFYNTTRFIFSCNYSSKIIPPIQSRCVVLRFKPIDRESMKNRLKDIAKKENF 177
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
D +L+ + E S GDMR+A+ LQ+ +L G + + E++G I + + L+ +
Sbjct: 178 EIDDDSLDAIYEISDGDMRKAVNVLQAV-KLSG--KVSATAIYEISGEINRDEYKNLINM 234
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVETSG 330
+F Y++ ++++ S + H SS+ +Q A + LE ++ +
Sbjct: 235 AIEGNFNDARNYLDKMLIDYGLSGIDIIKGMH------SSIRGEQIAYKQKLEIIMALAE 288
Query: 331 GDMR 334
+ R
Sbjct: 289 AEFR 292
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 8/125 (6%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
+L+ + E S GDMR+A+ LQ+ +L G + + E++G I + L+ + +
Sbjct: 183 SLDAIYEISDGDMRKAVNVLQAV-KLSG--KVSATAIYEISGEINRDEYKNLINMAIEGN 239
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F Y++ ++++ S + H + ++ KQK I+ LAE R+ +G +
Sbjct: 240 FNDARNYLDKMLIDYGLSGIDIIKGMHSSI-RGEQIAYKQKLEIIMALAEAEFRIVEGGT 298
Query: 437 EYIQI 441
+ IQ+
Sbjct: 299 DNIQM 303
>gi|68490424|ref|XP_710962.1| hypothetical protein CaO19.10723 [Candida albicans SC5314]
gi|46432227|gb|EAK91721.1| hypothetical protein CaO19.10723 [Candida albicans SC5314]
Length = 361
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 106/225 (47%), Positives = 147/225 (65%), Gaps = 19/225 (8%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM- 94
VEKYRP ++++V QQE+V ++K + LPH LFYGPPGTGKTST+IA +++G
Sbjct: 26 VEKYRPDSLEEVKGQQEIVDTVRKFVETGKLPHLLFYGPPGTGKTSTIIALAKEIYGATN 85
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQ----------QTASGFNQDGKPCPPFKIVILD 144
Y+ ILELNASDDRGI V+R+++K FA QTAS NQ FK++ILD
Sbjct: 86 YKNMILELNASDDRGIDVVRNQIKNFASTRQIFTKNTSQTASN-NQ-------FKLIILD 137
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EAD+MT+ AQ +LRR +EK TK+ RFC++ NY + L SRC++FRF P+ + + R
Sbjct: 138 EADAMTNVAQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDISAIKDR 197
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249
L + +E+V +A++ L++ S GDMRRA+ LQSC G E
Sbjct: 198 LNTVIIKENVNISPEAIDALLKLSNGDMRRALNVLQSCKAALGDE 242
>gi|397772266|ref|YP_006539812.1| Replication factor C [Natrinema sp. J7-2]
gi|397681359|gb|AFO55736.1| Replication factor C [Natrinema sp. J7-2]
Length = 360
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 109/291 (37%), Positives = 168/291 (57%), Gaps = 18/291 (6%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
+ ++ + ST GKT W+EKYRP+ ++D+ ++V LK + DLPH LF GP
Sbjct: 34 ADAEAAESTPGKTE----VWIEKYRPERLNDIKGHTDIVPRLKNYVEQDDLPHLLFAGPA 89
Query: 76 GTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
GTGKT+ + +++ D ++E LELNASD RGI V+RD++K FA+ + G++
Sbjct: 90 GTGKTTAAKSIAREVYDDDWQENFLELNASDQRGIDVVRDRIKDFARSSFGGYSH----- 144
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF
Sbjct: 145 ---RIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTE 201
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255
L + + +++ I E + ++ LV + GDMR+AI LQ+ A + GE + E
Sbjct: 202 LTADAIEAQVREIAATEDIAVTDDGVDALVYAADGDMRKAINALQAAAVM--GETVDEET 259
Query: 256 VLEVTGVIPKPWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFH 302
V +T +E +++ +D F +EDL+ E + + DQ H
Sbjct: 260 VFAITATARPEEVEAMVEHAIDGDFTAARAALEDLLTERGLAGGDVIDQLH 310
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 11/126 (8%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDS-F 378
++ LV + GDMR+AI LQ+ A + GE + E V +T +E +++ +D F
Sbjct: 227 VDALVYAADGDMRKAINALQAAAVM--GETVDEETVFAITATARPEEVEAMVEHAIDGDF 284
Query: 379 QVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALI--LEKLAECNARLQDGA 435
+EDL+ E + + DQ H SA ++A + LE+L E + R+ +GA
Sbjct: 285 TAARAALEDLLTERGLAGGDVIDQLH---RSAWEFDVPERATVRLLERLGEVDYRITEGA 341
Query: 436 SEYIQI 441
+E +Q+
Sbjct: 342 NERLQL 347
>gi|326512276|dbj|BAJ96119.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 335
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 126/309 (40%), Positives = 176/309 (56%), Gaps = 25/309 (8%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP + DV+ + VS L+ ++P+ + GPPGTGKT++++A H++ G
Sbjct: 18 IPWVEKYRPSRVADVVGNADAVSRLEVIARDGNMPNLILSGPPGTGKTTSILALAHEMLG 77
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
YRE +LELNASDDRG+ V+R+K+K FAQ+ + PP KIVILDEADSMT
Sbjct: 78 PSYREGVLELNASDDRGLDVVRNKIKMFAQKKVT--------LPPGRHKIVILDEADSMT 129
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME + +TRF L CN S II+P+ SRC+ RF L++ +L RL +
Sbjct: 130 TGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVA 189
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEK 270
E V + LE ++ T+ GDMR+A+ LQ A + G + E+V +V P P
Sbjct: 190 AEKVPYVPEGLEAIIFTADGDMRQALNNLQ--ATVSGFRFVNQENVFKVCDQ-PHP---- 242
Query: 271 LLKVDSFQVLEKYIEDLILEAYSA-TQLFDQFHD----IVMLASSLSDKQKALFKALETL 325
L V S +++ ++ EA S QL+D + I L + + A F LE L
Sbjct: 243 -LHVKS--MVKNVLDGKFDEACSGLKQLYDLGYSPTDIITTLFRVIKNYDMAEFLKLELL 299
Query: 326 VETSGGDMR 334
ET MR
Sbjct: 300 KETGFAHMR 308
>gi|405121785|gb|AFR96553.1| activator 1 40 kDa subunit [Cryptococcus neoformans var. grubii
H99]
Length = 347
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 106/245 (43%), Positives = 150/245 (61%), Gaps = 16/245 (6%)
Query: 16 SSSKTSVSTSGK---TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFY 72
SS+ +S + K +PWVEKYRP +DD++ + + LK ++PH +
Sbjct: 6 SSNNKGISATAKHIDAEGYEMPWVEKYRPVLLDDIVGNSDTIDRLKVIAEDGNVPHIIIS 65
Query: 73 GPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
G PG GKT+++ H L G+ Y+E +LELNASD+RGI V+R+K+K+FAQ+ +
Sbjct: 66 GMPGIGKTTSIHCLAHALLGEAYKEGVLELNASDERGIDVVRNKIKSFAQRKVT------ 119
Query: 133 KPCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190
PP KI+ILDEADSMT AQ ALRRTME + +TRF L CN + II+P+ SRC+
Sbjct: 120 --LPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAI 177
Query: 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG 250
R+ L + +L RL+ IC+ ES+ + + L L+ T+ GDMR+AI LQS G G
Sbjct: 178 LRYSKLNDAEVLKRLKEICDMESIKYNDEGLAALIFTAEGDMRQAINNLQSTW---SGFG 234
Query: 251 IVNED 255
VN+D
Sbjct: 235 FVNQD 239
>gi|448337480|ref|ZP_21526557.1| replication factor C small subunit [Natrinema pallidum DSM 3751]
gi|445625386|gb|ELY78746.1| replication factor C small subunit [Natrinema pallidum DSM 3751]
Length = 330
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 164/289 (56%), Gaps = 14/289 (4%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
S+ + T K W+EKYRP+ +DD+ ++V LK + DLPH LF GP GT
Sbjct: 2 SEADAEAAEPTPGKTEVWIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGT 61
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKT+ + +++ D ++E LELNASD RGI V+RD++K FA+ + G++
Sbjct: 62 GKTTAAKSIAREVYDDDWQENFLELNASDQRGIDVVRDRIKDFARSSFGGYSH------- 114
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L+
Sbjct: 115 -RIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELS 173
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
+ + +++ I E + ++ LV + GDMR+AI LQ+ A + GE + E V
Sbjct: 174 ADAIEAQVREIAATEDIAVTDDGVDALVYAADGDMRKAINALQAAAVM--GETVDEETVF 231
Query: 258 EVTGVIPKPWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFH 302
+T +E ++ +D F +EDL+ E + + DQ H
Sbjct: 232 AITATARPEEVEAMVDHAIDGDFTAARAALEDLLTERGLAGGDVIDQLH 280
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 11/126 (8%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDS-F 378
++ LV + GDMR+AI LQ+ A + GE + E V +T +E ++ +D F
Sbjct: 197 VDALVYAADGDMRKAINALQAAAVM--GETVDEETVFAITATARPEEVEAMVDHAIDGDF 254
Query: 379 QVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALI--LEKLAECNARLQDGA 435
+EDL+ E + + DQ H SA ++A + LE+L E + R+ +GA
Sbjct: 255 TAARAALEDLLTERGLAGGDVIDQLH---RSAWEFDVPERATVRLLERLGEVDYRITEGA 311
Query: 436 SEYIQI 441
+E +Q+
Sbjct: 312 NERLQL 317
>gi|452986023|gb|EME85779.1| hypothetical protein MYCFIDRAFT_41166 [Pseudocercospora fijiensis
CIRAD86]
Length = 353
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 119/312 (38%), Positives = 171/312 (54%), Gaps = 13/312 (4%)
Query: 12 KDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLF 71
KDA ++ +T G + +PWVEKYRP +DD++ E + LK ++PH +
Sbjct: 8 KDASTNGTKGHNTHGTSTTYELPWVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVII 67
Query: 72 YGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131
G PG GKT++++ QL GD Y+E +LELNASD+RGI V+R+++K FAQ+ +
Sbjct: 68 SGMPGIGKTTSVLCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVT----- 122
Query: 132 GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
P KIVILDEADSMT AQ ALRRTME + +TRF CN + II+PL SRC+
Sbjct: 123 -LPAGRQKIVILDEADSMTSGAQQALRRTMEIYSGTTRFAFACNLSNKIIEPLQSRCAIL 181
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
R+ L + ++ RL ICE E V + LV ++ GDMR+AI LQS G G
Sbjct: 182 RYSRLTDAQVVKRLYQICEAEKVEYSDDGIAALVFSAEGDMRQAINNLQST---HAGFGF 238
Query: 252 VNEDVLEVTGVIPKPW-IEKLLKVDSFQVLEKYIED---LILEAYSATQLFDQFHDIVML 307
VN D + P P ++ ++K +++ ++D L YS+ + +
Sbjct: 239 VNGDNVFRVVDSPHPIKVQAMIKSCQEGKIDEALDDLKELWNLGYSSHDIISTMFKVTKT 298
Query: 308 ASSLSDKQKALF 319
SLS+ K F
Sbjct: 299 IPSLSEHTKLEF 310
>gi|388582885|gb|EIM23188.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 331
Score = 204 bits (519), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 175/316 (55%), Gaps = 25/316 (7%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
K+ N VPWVEKYRP+ + D++ Q+ V L+ ++PH + G PG GKT+ ++A
Sbjct: 3 KSANYEVPWVEKYRPRVLSDIVGNQDTVKRLEVIAQDGNMPHMIMSGTPGIGKTTAVLAL 62
Query: 87 CHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVIL 143
H L G D+++E +LELNASD+RGI V+R+++K+FAQ+ + PP KIVIL
Sbjct: 63 AHTLLGPDVFKEAVLELNASDERGIDVVRNRIKSFAQKKIA--------LPPGRHKIVIL 114
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEADSMT AQ ALRRTME + +TRF CN + II+P+ SRC+ RF L + +L
Sbjct: 115 DEADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPIQSRCAILRFSKLRDIELLQ 174
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
RL+ I E+E+ + E L+ TS GDMR+A+ LQS G G+V D +
Sbjct: 175 RLRQIAEKENADVTDEGYEALIFTSEGDMRQAVNNLQST---HTGLGLVTPDAVFKVCDQ 231
Query: 264 PKP-WIEKLL----KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKAL 318
P P ++ LL K D L K +++L Y+A + + SL + K
Sbjct: 232 PHPLLVQNLLESCHKADIEDALSK-LDELWTHGYAAIDIIQTLFRVARNTQSLEESLK-- 288
Query: 319 FKALETLVETSGGDMR 334
LE + E MR
Sbjct: 289 ---LEYIKEIGWTHMR 301
Score = 41.2 bits (95), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Query: 298 FDQFHDIVMLAS--SLSDKQKALF--KALETLVETSGGDMRRAITCLQSCARLKGGEGIV 353
F + DI +L +++K+ A + E L+ TS GDMR+A+ LQS G G+V
Sbjct: 164 FSKLRDIELLQRLRQIAEKENADVTDEGYEALIFTSEGDMRQAVNNLQST---HTGLGLV 220
Query: 354 NEDVLEVTGVIPNP-WIEKLL----KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS 408
D + P+P ++ LL K D L K +++L Y+A + + +
Sbjct: 221 TPDAVFKVCDQPHPLLVQNLLESCHKADIEDALSK-LDELWTHGYAAIDIIQTLFRVARN 279
Query: 409 ASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
SL + K ++++ + R+ +G + +Q+
Sbjct: 280 TQSLEESLKLEYIKEIGWTHMRILEGVATIVQL 312
>gi|402219931|gb|EJU00004.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 343
Score = 204 bits (519), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 129/329 (39%), Positives = 181/329 (55%), Gaps = 28/329 (8%)
Query: 16 SSSKTSVSTSGKTRNKP---VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFY 72
SSSK +GK +P +PWVEKYRP+ +DDV+ + + LK + PH +
Sbjct: 3 SSSKGKEVANGKA-TEPGYEMPWVEKYRPRVLDDVVGNTDTIDRLKVIARDGNCPHIIIS 61
Query: 73 GPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
G PG GKT+++ H L GD Y+E +LELNASD+RGI V+R+K+KTFAQ+ +
Sbjct: 62 GMPGIGKTTSIHCLAHALLGDAYKEGVLELNASDERGIDVVRNKIKTFAQKKVT------ 115
Query: 133 KPCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190
PP KI+ILDEADSMT AQ ALRRTME + +TRF L CN + II+P+ SRC+
Sbjct: 116 --LPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAI 173
Query: 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG 250
R+ L + +L RL ICE E V + + L L+ T+ GDMR+AI +QS G G
Sbjct: 174 LRYSKLRDQEVLKRLLEICEAEKVKYNDEGLTALIFTAEGDMRQAINNIQSTW---SGFG 230
Query: 251 IVNEDVLEVTGVIPKP-WIEKLL----KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305
VN D + P P I+ +L K D ++K +++L + YSA + +
Sbjct: 231 FVNGDNVFKVCDQPHPVLIQAMLRSCHKGDVQGTMDK-LDELWGQGYSAVDIVVTLFRVT 289
Query: 306 MLASSLSDKQKALFKALETLVETSGGDMR 334
+ L + + LE + E MR
Sbjct: 290 KTFNELQE-----YSKLEYIREIGWTHMR 313
>gi|396495754|ref|XP_003844622.1| similar to replication factor C subunit 3 [Leptosphaeria maculans
JN3]
gi|312221202|emb|CBY01143.1| similar to replication factor C subunit 3 [Leptosphaeria maculans
JN3]
Length = 409
Score = 204 bits (519), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 141/211 (66%), Gaps = 4/211 (1%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM- 94
VEKYRP ++DDV Q++++ + K + LPH L YGPPGTGKTST++A +++G+
Sbjct: 62 VEKYRPNSLDDVEGHQDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKN 121
Query: 95 YRERILELNASDDRGIQVIRDKVKTFA--QQTASGFNQDGKPC-PPFKIVILDEADSMTH 151
R+ +LELNASDDRGI V+R+++KTF+ +Q S + G FK++ILDEAD+MT
Sbjct: 122 MRQMVLELNASDDRGIDVVREQIKTFSSTKQIFSAAPKAGDTALATFKLIILDEADAMTA 181
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL + + + + E+
Sbjct: 182 TAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVDKVIEE 241
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSC 242
E+V A ++LV S GDMRRA+ LQ+C
Sbjct: 242 ENVNITQDATDSLVSLSKGDMRRALNVLQAC 272
>gi|388504120|gb|AFK40126.1| unknown [Medicago truncatula]
Length = 333
Score = 204 bits (519), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 125/315 (39%), Positives = 174/315 (55%), Gaps = 25/315 (7%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
T + VPWVEKYRP + D++ ++ VS L+ ++P+ + GPPGTGKT++++A
Sbjct: 9 NTASYDVPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILAL 68
Query: 87 CHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILD 144
H+L G YRE +LELNASDDRGI V+R+K+K FAQ+ + PP K+VILD
Sbjct: 69 AHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGRHKVVILD 120
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EADSMT AQ ALRRTME + STRF L CN S II+P+ SRC+ RF L++ +L R
Sbjct: 121 EADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGR 180
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP 264
L + + E V + LE ++ T+ GDMR+ + LQ A G + + +V +V P
Sbjct: 181 LMVVVQAEKVPYVPEGLEAIIFTADGDMRQGLNNLQ--ATFSGFQFVNQANVFKVCDQ-P 237
Query: 265 KPWIEKLLKVDSFQVLEKYIEDLILEAYSA-TQLFDQFHD----IVMLASSLSDKQKALF 319
P K ++ IE EA S QL+D + I L + A +
Sbjct: 238 HPLHVK-------NMVRNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKSYDMAEY 290
Query: 320 KALETLVETSGGDMR 334
LE + ET MR
Sbjct: 291 LKLEFMKETGFAHMR 305
>gi|255537345|ref|XP_002509739.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223549638|gb|EEF51126.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 333
Score = 204 bits (518), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 124/313 (39%), Positives = 178/313 (56%), Gaps = 25/313 (7%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
+N VPWVEKYRP I D++ ++ VS L+ ++P+ + GPPGTGKT++++A H
Sbjct: 11 QNYDVPWVEKYRPSKICDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAH 70
Query: 89 QLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEA 146
+L G Y+E +LELNASDDRGI V+R+K+K FAQ+ + PP K+VILDEA
Sbjct: 71 ELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGRHKVVILDEA 122
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
DSMT AQ ALRRTME + STRF L CN S II+P+ SRC+ RF L++ +L RL
Sbjct: 123 DSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLI 182
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP 266
+ + E V + LE ++ T+ GDMR+A+ LQ A G + E+V +V P P
Sbjct: 183 IVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQ--ATYSGFRFVNQENVFKVCDQ-PHP 239
Query: 267 W-IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHD----IVMLASSLSDKQKALFKA 321
++ +++ V+E +D QL+D + I L + + A +
Sbjct: 240 LHVKNMVR----HVMEGKYDD---ACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLK 292
Query: 322 LETLVETSGGDMR 334
LE + ET MR
Sbjct: 293 LEFMKETGFAHMR 305
>gi|323508283|emb|CBQ68154.1| probable RFC4-DNA replication factor C, 37 kDa subunit [Sporisorium
reilianum SRZ2]
Length = 341
Score = 204 bits (518), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 176/310 (56%), Gaps = 19/310 (6%)
Query: 17 SSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPG 76
+S +S + + T +PWVEKYRP ++DV+ ++ + LK + + PH L G PG
Sbjct: 4 TSGSSAAPAAVTTGYELPWVEKYRPMRLNDVVGNKDTIDRLKVIQNDGNCPHLLISGLPG 63
Query: 77 TGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCP 136
GKT++++ L GD Y+E +LELNASD+RG+ V+R+K+KTFAQ+ S P
Sbjct: 64 IGKTTSVLCLARALLGDAYKEGVLELNASDERGVDVVRNKIKTFAQKKVS--------LP 115
Query: 137 P--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
P KI+ILDEADSMT AAQ ALRRTME + +TRFC CN + II+P+ SRC+ R+
Sbjct: 116 PGRHKIIILDEADSMTPAAQQALRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYG 175
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 254
+ + +L RL ICE E+V + L ++ T+ GDMR+AI LQS G G V+
Sbjct: 176 KVRDEQILKRLLEICEMEAVEYSDEGLAAIIFTTEGDMRQAINNLQSTWT---GLGFVSP 232
Query: 255 DVLEVTGVIPKPWIEKLL-----KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLAS 309
D + P P++ + L K D +EK ++++ + Y+A + +V
Sbjct: 233 DNVFKVCDQPHPFLIRALLLSCKKGDIDDAMEK-LDEIWSKGYAAVDIVTTLFRVVKTLD 291
Query: 310 SLSDKQKALF 319
+ + K F
Sbjct: 292 GIPEATKLKF 301
>gi|452981800|gb|EME81559.1| hypothetical protein MYCFIDRAFT_188590 [Pseudocercospora fijiensis
CIRAD86]
Length = 367
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 142/216 (65%), Gaps = 6/216 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++ DV Q++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 44 LPWVEKYRPNSLSDVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARKIYG 103
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGK--PCPPFKIVILDEA 146
+ R+ +LELNASDDRGI V+R+++KTF+ Q A F++ + +K++ILDEA
Sbjct: 104 NKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFAGSFDKSKQDDSMATYKLIILDEA 163
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR ME+ T +TRFC+I NY + L SRC++FRF PL E + +
Sbjct: 164 DAMTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEPDIRRLVD 223
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ +E V A ++LV S GDMRRA+ LQ+C
Sbjct: 224 KVIIEEGVNIASDATDSLVTLSKGDMRRALNVLQAC 259
>gi|448467531|ref|ZP_21599543.1| replication factor C small subunit [Halorubrum kocurii JCM 14978]
gi|445812407|gb|EMA62401.1| replication factor C small subunit [Halorubrum kocurii JCM 14978]
Length = 327
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/273 (40%), Positives = 158/273 (57%), Gaps = 16/273 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD- 93
W+EKYRP+++DD+ Q+E+V L+ + D+PH LF GP G GKT+ A Q++GD
Sbjct: 18 WIEKYRPQSLDDIHGQEEIVERLQSYIEQDDIPHLLFSGPAGVGKTTASTAIARQVYGDD 77
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD RGI V+RD++K FA+ + G F+IV LDEADS+T A
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG---------DFRIVFLDEADSLTDDA 128
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL++ + + + I E
Sbjct: 129 QSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDAAVAAQTREIAAAEG 188
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL- 272
+ ++ LV + GDMRRAI LQ+ A G+ + E V +T IE ++
Sbjct: 189 IEVTDAGVDALVYAADGDMRRAINSLQAAATT--GDVVDEEAVYAITATARPEEIESMVT 246
Query: 273 -KVDS-FQVLEKYIEDLILE-AYSATQLFDQFH 302
+D F ++ L+ E + + DQ H
Sbjct: 247 NALDGDFTRARATLDQLLTETGMAGGDVIDQLH 279
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 7/124 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL--KVDS- 377
++ LV + GDMRRAI LQ+ A G+ + E V +T IE ++ +D
Sbjct: 195 GVDALVYAADGDMRRAINSLQAAATT--GDVVDEEAVYAITATARPEEIESMVTNALDGD 252
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F ++ L+ E + + DQ H V LS+++ ++E++ E + R+ +GA+
Sbjct: 253 FTRARATLDQLLTETGMAGGDVIDQLHRSVWE-FDLSEREAVALMERIGEADYRIAEGAN 311
Query: 437 EYIQ 440
E +Q
Sbjct: 312 EQVQ 315
>gi|256090013|ref|XP_002581023.1| replication factor C / DNA polymerase III gamma-tau subunit
[Schistosoma mansoni]
Length = 245
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/206 (50%), Positives = 141/206 (68%), Gaps = 7/206 (3%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY 95
+EKYRP +I+D+I ++ +K+ + LPH LFYGPPGTGKTST++AA +L+ +
Sbjct: 5 IEKYRPSSIEDLISHDDISKTIKRFIDNDRLPHLLFYGPPGTGKTSTILAAAKRLYSRQF 64
Query: 96 RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
+LELNASDDRGI V+R++V +FA T + F GK FK+VILDEADSMT AQ
Sbjct: 65 SSMVLELNASDDRGIDVVREQVLSFAS-TKTLFA--GK----FKLVILDEADSMTKDAQN 117
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
ALRR +EK T++TRFCLICNY+S II + SRC+KFRF PLA N + T L+ I E V
Sbjct: 118 ALRRIIEKFTENTRFCLICNYLSKIIPAIQSRCTKFRFAPLAFNDVSTCLRKIASNEGVD 177
Query: 216 CDFKALETLVETSGGDMRRAITCLQS 241
++ + + + GDMR++I LQS
Sbjct: 178 LTDDGIKAIYQFASGDMRKSINLLQS 203
>gi|448342324|ref|ZP_21531276.1| replication factor C small subunit [Natrinema gari JCM 14663]
gi|445626315|gb|ELY79664.1| replication factor C small subunit [Natrinema gari JCM 14663]
Length = 330
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/291 (37%), Positives = 167/291 (57%), Gaps = 18/291 (6%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
+ ++ + ST GKT W+EKYRP+ +DD+ ++V LK + DLPH LF GP
Sbjct: 4 ADAEAAESTPGKTE----VWIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPA 59
Query: 76 GTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
GTGKT+ + +++ D ++E LELNASD RGI V+RD++K FA+ + G++
Sbjct: 60 GTGKTTAAKSIAREVYDDDWQENFLELNASDQRGIDVVRDRIKDFARSSFGGYSH----- 114
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF
Sbjct: 115 ---RIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTE 171
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255
L + + +++ I E + ++ LV + GDMR+AI LQ+ A + GE +
Sbjct: 172 LTADAIEAQVREIAATEDIAVTDDGVDALVYAADGDMRKAINALQAAAVM--GETVDEGT 229
Query: 256 VLEVTGVIPKPWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFH 302
V +T +E +++ +D F +EDL+ E + + DQ H
Sbjct: 230 VFAITATARPEEVEAMVEHAIDGDFTAARAALEDLLTERGLAGGDVIDQLH 280
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 64/126 (50%), Gaps = 11/126 (8%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDS-F 378
++ LV + GDMR+AI LQ+ A + GE + V +T +E +++ +D F
Sbjct: 197 VDALVYAADGDMRKAINALQAAAVM--GETVDEGTVFAITATARPEEVEAMVEHAIDGDF 254
Query: 379 QVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALI--LEKLAECNARLQDGA 435
+EDL+ E + + DQ H SA ++A + LE+L E + R+ +GA
Sbjct: 255 TAARAALEDLLTERGLAGGDVIDQLH---RSAWEFDVPERATVRLLERLGEVDYRITEGA 311
Query: 436 SEYIQI 441
+E +Q+
Sbjct: 312 NERLQL 317
>gi|300709601|ref|YP_003735415.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|448297629|ref|ZP_21487674.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|299123284|gb|ADJ13623.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|445578957|gb|ELY33355.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
Length = 329
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/298 (38%), Positives = 172/298 (57%), Gaps = 17/298 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP T+ +VI Q+E+ L++ + DLP+ LF G G GKT+ A +++G+
Sbjct: 18 WVEKYRPGTLGEVIGQEEITDRLERYVERDDLPNLLFSGSAGIGKTTCATAIAREVYGED 77
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R+ LELNASDDRGI V+R ++K FA+ + G++ ++I+ LDEADS+T AQ
Sbjct: 78 WRDNFLELNASDDRGIDVVRGRIKEFARASFGGYS--------YRIIFLDEADSLTSDAQ 129
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF P+++ + R++ I E +
Sbjct: 130 SALRRTMEQFSSNTRFILSCNYSSKIIDPIQSRCAVFRFSPISDAAVGERIREIAHIEGI 189
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
+E LV + GDMRRA+ LQ+ A + GE + E V +T IE ++
Sbjct: 190 EITDGGVEALVYAADGDMRRAVNSLQAAAVM--GETVDEEVVYTITATARPEEIEAMVTS 247
Query: 275 ---DSFQVLEKYIEDLIL-EAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVET 328
F ++DL+ + S + DQ H V LSD++ + L+ + ET
Sbjct: 248 ALEGDFTTARATLDDLLSNKGLSGGDIIDQLHRSVW-DLGLSDREA--VRTLDRIGET 302
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 7/125 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
+E LV + GDMRRA+ LQ+ A + GE + E V +T IE ++
Sbjct: 195 GVEALVYAADGDMRRAVNSLQAAAVM--GETVDEEVVYTITATARPEEIEAMVTSALEGD 252
Query: 378 FQVLEKYIEDLIL-EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F ++DL+ + S + DQ H V LSD++ L+++ E + R+ +GA+
Sbjct: 253 FTTARATLDDLLSNKGLSGGDIIDQLHRSVWDLG-LSDREAVRTLDRIGETDYRITEGAN 311
Query: 437 EYIQI 441
E IQ+
Sbjct: 312 ERIQL 316
>gi|194706108|gb|ACF87138.1| unknown [Zea mays]
Length = 331
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 124/307 (40%), Positives = 175/307 (57%), Gaps = 21/307 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP + DV+ + V+ L+ ++P+ + GPPGTGKT++++A H+L G
Sbjct: 13 IPWVEKYRPSRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 72
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR+ +LELNASDDRG+ V+R+K+K FAQ+ + Q G+ KIVILDEADSMT
Sbjct: 73 PSYRDAVLELNASDDRGLDVVRNKIKMFAQKKVT--LQPGR----HKIVILDEADSMTSG 126
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME + +TRF L CN S II+P+ SRC+ RF L++ +L RL + E
Sbjct: 127 AQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAE 186
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
V + LE ++ T+ GDMR+A+ LQ A G I E+V +V P P K
Sbjct: 187 KVPYAPEGLEAIIFTADGDMRQALNNLQ--ATFSGFRFINQENVFKVCDQ-PHPLHVK-- 241
Query: 273 KVDSFQVLEKYIEDLILEAYSA-TQLFDQFHD----IVMLASSLSDKQKALFKALETLVE 327
+++ ++ EA SA QL+D + I L + + A + LE L E
Sbjct: 242 -----NMVKNVLDGKFDEACSALKQLYDLGYSPTDIITTLFRVVKNYDMAEYLKLEMLKE 296
Query: 328 TSGGDMR 334
T MR
Sbjct: 297 TGFAHMR 303
>gi|449460473|ref|XP_004147970.1| PREDICTED: replication factor C subunit 2-like [Cucumis sativus]
gi|449494241|ref|XP_004159490.1| PREDICTED: replication factor C subunit 2-like [Cucumis sativus]
Length = 331
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 121/312 (38%), Positives = 175/312 (56%), Gaps = 25/312 (8%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N +PWVEKYRP + D++ ++ VS L+ ++P+ + GPPGTGKT++++A H+
Sbjct: 10 NYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHE 69
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEAD 147
L G Y+E +LELNASDDRGI V+R+K+K FAQ+ + PP K+VILDEAD
Sbjct: 70 LLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGRHKVVILDEAD 121
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
SMT AQ ALRRTME + +TRF L CN S II+P+ SRC+ RF L + +L RL
Sbjct: 122 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 181
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW 267
+ + E V + LE ++ T+ GDMR+A+ LQ+ G VN+D + P P
Sbjct: 182 VIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT---HSGFRFVNQDNVFKVCDQPHPL 238
Query: 268 -IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHD----IVMLASSLSDKQKALFKAL 322
++ +++ VLE +D QL+D + I L + + A + L
Sbjct: 239 HVKNVVR----NVLEGKFDD---ACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKL 291
Query: 323 ETLVETSGGDMR 334
E + ET MR
Sbjct: 292 EFMKETGFAHMR 303
>gi|58269654|ref|XP_571983.1| Activator 1 40 kDa subunit [Cryptococcus neoformans var. neoformans
JEC21]
gi|134114003|ref|XP_774249.1| hypothetical protein CNBG2300 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256884|gb|EAL19602.1| hypothetical protein CNBG2300 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228219|gb|AAW44676.1| Activator 1 40 kDa subunit, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 347
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/245 (43%), Positives = 151/245 (61%), Gaps = 16/245 (6%)
Query: 16 SSSKTSVSTSGKTRNKP---VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFY 72
SS+ +S + K + +PWVEKYRP +DD++ + V LK ++PH +
Sbjct: 6 SSNNKLISATAKHTDAEGYEMPWVEKYRPVLLDDIVGNSDTVDRLKVIAEDGNVPHIIIS 65
Query: 73 GPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
G PG GKT+++ H L G+ Y+E +LELNASD+RGI V+R+K+K+FAQ+ +
Sbjct: 66 GMPGIGKTTSIHCLAHALLGEAYKEGVLELNASDERGIDVVRNKIKSFAQRKVT------ 119
Query: 133 KPCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190
PP KI+ILDEADSMT AQ ALRRTME + +TRF L CN + II+P+ SRC+
Sbjct: 120 --LPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAI 177
Query: 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG 250
R+ L + +L RL+ IC+ ES+ + + L L+ T+ GDMR+AI LQS G G
Sbjct: 178 LRYSKLNDAEVLKRLKEICDMESIKHNDEGLAALIFTAEGDMRQAINNLQSTW---SGFG 234
Query: 251 IVNED 255
VN+D
Sbjct: 235 FVNQD 239
>gi|313243384|emb|CBY39995.1| unnamed protein product [Oikopleura dioica]
Length = 270
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/230 (45%), Positives = 150/230 (65%), Gaps = 4/230 (1%)
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
+FG++ ER+ ELNASD+RGI V+R+KVK FA TA+ DGK CP FK++ILDEADSM
Sbjct: 5 MFGNLASERVCELNASDERGIAVVREKVKNFAMTTANSQRADGKKCPNFKLIILDEADSM 64
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T +AQ ALRRTME +KSTRFCL+CNYVS II P+TSR +KFRF+ L + ++++I
Sbjct: 65 TKSAQEALRRTMEVYSKSTRFCLLCNYVSRIIDPITSRTAKFRFRLLPKEIQYNQIRHIR 124
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIE 269
E E+V A+E ++ + GDMRRA+ LQS RL E I +DV +V + P I+
Sbjct: 125 EAENVQISENAVEEIISVAAGDMRRAVNFLQSLHRLHEDE-ITPDDVRDVAILCPAEKID 183
Query: 270 KLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+++ + S++ + ++ L+ + Y A Q Q D V+ ++ D QK
Sbjct: 184 EVIREARSKSYENMLTKVQALLQDGYPAGQFMHQLQDAVIADDAIEDFQK 233
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 74/132 (56%), Gaps = 4/132 (3%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VD 376
A+E ++ + GDMRRA+ LQS RL E I +DV +V + P I+++++
Sbjct: 134 NAVEEIISVAAGDMRRAVNFLQSLHRLHEDE-ITPDDVRDVAILCPAEKIDEVIREARSK 192
Query: 377 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
S++ + ++ L+ + Y A Q Q D V++ ++ D QK I+ ++ + + L DGA
Sbjct: 193 SYENMLTKVQALLQDGYPAGQFMHQLQDAVIADDAIEDFQKVNIINQIGKADHALTDGAD 252
Query: 437 EYIQILDLGSIV 448
E +QIL + S++
Sbjct: 253 EKVQILAIVSVL 264
>gi|336377010|gb|EGO05345.1| hypothetical protein SERLA73DRAFT_174456 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390053|gb|EGO31196.1| hypothetical protein SERLADRAFT_455984 [Serpula lacrymans var.
lacrymans S7.9]
Length = 343
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 127/309 (41%), Positives = 171/309 (55%), Gaps = 24/309 (7%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+ +DDV+ + + LK + PH + G PG GKT+++ HQL G
Sbjct: 22 LPWVEKYRPQNLDDVVGNVDTIERLKVIAKDGNCPHIIISGLPGIGKTTSIHCLAHQLLG 81
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
D Y+E +LELNASD+RGI V+R+K+K FAQ+ + PP KIVILDEADSMT
Sbjct: 82 DAYKEGVLELNASDERGIDVVRNKIKAFAQKKVT--------LPPARHKIVILDEADSMT 133
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME + +TRFCL CN + II+P+ SRC+ R+ L + +L RL ICE
Sbjct: 134 PGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDTEILKRLLEICE 193
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTG----VIPK 265
E V + L L+ T GDMR+AI LQS G G V+ E+V +V VI +
Sbjct: 194 MEKVEYNDDGLTALIFTCEGDMRQAINNLQST---HSGFGFVSGENVFKVCDQPHPVIVQ 250
Query: 266 PWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETL 325
I LK D + K + +L + YSA + +V L + + LE +
Sbjct: 251 SIIRACLKGDIDGAMGK-LNELWEQGYSAVDIVVTVFRVVKTFDELPE-----YTKLEYI 304
Query: 326 VETSGGDMR 334
E MR
Sbjct: 305 KEIGFTHMR 313
>gi|448434836|ref|ZP_21586534.1| replication factor C small subunit [Halorubrum tebenquichense DSM
14210]
gi|445684459|gb|ELZ36835.1| replication factor C small subunit [Halorubrum tebenquichense DSM
14210]
Length = 327
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 147/239 (61%), Gaps = 12/239 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
W+EKYRP+T+DD+ Q+E+V L+ ++ D+PH LF GP G GKT+ A +++G D
Sbjct: 18 WIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGIGKTTAATAIAREIYGED 77
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD RGI V+RD++K FA+ + G F+IV LDEADS+T A
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG---------DFRIVFLDEADSLTDDA 128
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL++ + ++ I E
Sbjct: 129 QSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAED 188
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
+ + ++ LV + GDMRRAI LQ+ A G+ + E V +T IE ++
Sbjct: 189 IEVTDEGIDALVYAADGDMRRAINSLQAAATT--GDVVDEEAVYAITATARPEEIESMV 245
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VD 376
+ ++ LV + GDMRRAI LQ+ A G+ + E V +T IE ++
Sbjct: 194 EGIDALVYAADGDMRRAINSLQAAATT--GDVVDEEAVYAITATARPEEIESMVTDALNG 251
Query: 377 SFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
F ++ L+ E + + DQ H V LS+++ ++E++ E + R+ +GA
Sbjct: 252 DFARARSTLDTLLTETGMAGGDVIDQLHRSVWE-FELSEREAVRLMERIGEADYRIAEGA 310
Query: 436 SEYIQ 440
+E +Q
Sbjct: 311 NEQVQ 315
>gi|401623752|gb|EJS41840.1| rfc4p [Saccharomyces arboricola H-6]
Length = 323
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 111/267 (41%), Positives = 155/267 (58%), Gaps = 17/267 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+ + D++ +E + L++ ++PH + G PG GKT+++ H+L G
Sbjct: 9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG 68
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y + +LELNASDDRGI V+R+++K FAQ+ P KI+ILDEADSMT
Sbjct: 69 SSYADGVLELNASDDRGIDVVRNQIKHFAQKKLH------LPQGKHKIIILDEADSMTAG 122
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME + STRF CN + II+PL SRC+ R+ L++ +L RL I + E
Sbjct: 123 AQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLEIIKLE 182
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
V LE ++ T+ GDMR+AI LQS G G+VN D + P P I K +
Sbjct: 183 DVKYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNADNVFKIVDSPHPLIVKKM 239
Query: 273 KV-----DSFQVLEKYIEDLILEAYSA 294
+ DS Q+L DL + YS+
Sbjct: 240 LLATNLDDSIQILR---TDLWKKGYSS 263
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 11/137 (8%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV----- 375
LE ++ T+ GDMR+AI LQS G G+VN D + P+P I K + +
Sbjct: 190 GLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNADNVFKIVDSPHPLIVKKMLLATNLD 246
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
DS Q+L DL + YS+ + + + + + + + +++++ + R+ +G
Sbjct: 247 DSIQILR---TDLWKKGYSSIDIVTTSFRVTKNLTQVKESVRLEMIKEIGLTHMRILEGV 303
Query: 436 SEYIQILDLGSIVIKAN 452
Y+Q+ + + + K N
Sbjct: 304 GTYLQLASMLAKIHKLN 320
>gi|448346878|ref|ZP_21535757.1| replication factor C small subunit [Natrinema altunense JCM 12890]
gi|445631215|gb|ELY84447.1| replication factor C small subunit [Natrinema altunense JCM 12890]
Length = 330
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 164/289 (56%), Gaps = 14/289 (4%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
S+ + T K W+EKYRP+ +DD+ ++V LK + DLPH LF GP GT
Sbjct: 2 SEADAEAAEPTPGKTEVWIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGT 61
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKT+ + +++ D ++E LELNASD RGI V+RD++K FA+ + G++
Sbjct: 62 GKTTAAKSIAREVYDDDWQENFLELNASDQRGIDVVRDRIKDFARSSFGGYSH------- 114
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L
Sbjct: 115 -RIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELT 173
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
+ + +++ I E + ++ LV + GDMR+AI LQ+ A + GE + E V
Sbjct: 174 VDAIEAQVREIAATEDIAVTDDGVDALVYAADGDMRKAINALQAAAVM--GETVDEETVF 231
Query: 258 EVTGVIPKPWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFH 302
+T +E +++ +D F +EDL+ E + + DQ H
Sbjct: 232 AITATARPEEVEAMVEHAIDGDFTAARAALEDLLTERGLAGGDVIDQLH 280
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 11/126 (8%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDS-F 378
++ LV + GDMR+AI LQ+ A + GE + E V +T +E +++ +D F
Sbjct: 197 VDALVYAADGDMRKAINALQAAAVM--GETVDEETVFAITATARPEEVEAMVEHAIDGDF 254
Query: 379 QVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALI--LEKLAECNARLQDGA 435
+EDL+ E + + DQ H SA ++A + LE+L E + R+ +GA
Sbjct: 255 TAARAALEDLLTERGLAGGDVIDQLH---RSAWEFDVPERATVRLLERLGEVDYRITEGA 311
Query: 436 SEYIQI 441
+E +Q+
Sbjct: 312 NERLQL 317
>gi|307191665|gb|EFN75139.1| Replication factor C subunit 5 [Harpegnathos saltator]
Length = 329
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/224 (45%), Positives = 143/224 (63%), Gaps = 12/224 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF- 91
+PWVEKYRPK +D++I + ++ + K + LPH L YGPPGTGKTST++A +L+
Sbjct: 11 LPWVEKYRPKNLDELISHETIIKTINKFIDENQLPHLLLYGPPGTGKTSTILACARKLYT 70
Query: 92 -GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+LELNASDDRGI ++R ++ +FA T + + FK++ILDEAD+MT
Sbjct: 71 PAQFNSMVVLELNASDDRGIGIVRGQILSFAS-TGTMYKS------AFKLIILDEADAMT 123
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRR +EK T + RFC+ICNY+S II L SRC++FRF PLA ++ RL ++ E
Sbjct: 124 IDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIIPRLNHVIE 183
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 254
E++ + L+ SGGDMR+ I+ LQS GIVNE
Sbjct: 184 AENLNVTEDGKQALMTLSGGDMRKVISVLQSTW---FAYGIVNE 224
>gi|300123151|emb|CBK24424.2| unnamed protein product [Blastocystis hominis]
Length = 314
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/288 (39%), Positives = 167/288 (57%), Gaps = 24/288 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PW+EK+RP+ ++D++ +E + +K +LPH L GPPGTGKT++M+ H + GD
Sbjct: 4 PWIEKHRPQCLEDIVGNEETIKRMKVITETGNLPHILLAGPPGTGKTTSMLCLAHAMLGD 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
Y+ ++ELNASDDRGI V+R+K+K FAQ S P K+V+LDEADSMT AA
Sbjct: 64 AYKTAVIELNASDDRGIDVVREKIKLFAQSKVS------LPEGSHKLVLLDEADSMTPAA 117
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME + +TRF L+CN S II+P+ SRC+ RF L + +L RL +ICE+E
Sbjct: 118 QQALRRIMELYSSTTRFALVCNISSKIIEPIQSRCAILRFNRLKDTEILDRLLHICEEEK 177
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK 273
+ L L+ + GD+R A+ LQ A G + E+V++V P P + K
Sbjct: 178 ITYTNDGLSALLFCADGDLRVAVNSLQ--ATFYGFNVVNEENVIKVCDQ-PPPVVAK--- 231
Query: 274 VDSFQVLEKYI-EDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFK 320
Q+++ + +D++ TQL++ L S SD +FK
Sbjct: 232 ----QIVQCCVSKDMVGARSGMTQLWN-------LGYSSSDIVGTIFK 268
>gi|150400153|ref|YP_001323920.1| replication factor C small subunit [Methanococcus vannielii SB]
gi|166225157|sp|A6US36.1|RFCS_METVS RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|150012856|gb|ABR55308.1| Replication factor C [Methanococcus vannielii SB]
Length = 315
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 139/224 (62%), Gaps = 10/224 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ +D+V+ QE++ LK + +PH LF G PG GKT+ + L+G+
Sbjct: 4 PWVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYGN 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
++E LELN+SD+RGI VIR KVK FA+ G PFK++ LDE+D++T A
Sbjct: 64 TWKENFLELNSSDERGIDVIRTKVKDFARTKPIG-------DAPFKVIFLDESDALTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTMEK + RF L CNY S II P+ SRC+ FRF PL ++ L+ I E+ES
Sbjct: 117 QNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEISEKES 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
+ + ++ ++ S GDMR+AI LQ+ A + +NE V+
Sbjct: 177 INVEKSGMDAIIYVSEGDMRKAINVLQTGAAVSKN---INETVI 217
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 25/134 (18%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQV 380
++ ++ S GDMR+AI LQ+ A + +NE V+ P +++ K+ +
Sbjct: 183 GMDAIIYVSEGDMRKAINVLQTGAAVSKN---INETVIYKVASKARP--DEIKKMTELAL 237
Query: 381 LEKYIEDLILEAYSATQLFDQFHDIVMSAS-------------SLSDKQKALILEKLAEC 427
K++E + QL+ D MS +S+K+K ++E + EC
Sbjct: 238 NGKFVE-------AREQLYKLMIDWGMSGEDIIIQIFREVPNLEISEKEKVHLVEAIGEC 290
Query: 428 NARLQDGASEYIQI 441
+ R+ +GA+E IQ+
Sbjct: 291 DFRIVEGANERIQL 304
>gi|448381294|ref|ZP_21561497.1| replication factor C small subunit [Haloterrigena thermotolerans
DSM 11522]
gi|445663102|gb|ELZ15856.1| replication factor C small subunit [Haloterrigena thermotolerans
DSM 11522]
Length = 330
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/289 (37%), Positives = 164/289 (56%), Gaps = 14/289 (4%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
S+ + T K W+EKYRP+ + D+ ++V L+ + DLPH LF GP GT
Sbjct: 2 SEADAEAAEPTPGKTEVWIEKYRPELLADIKGHTDIVPRLENYVEQDDLPHLLFAGPAGT 61
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKT+ A +++ D +RE LELNASD RGI V+RD++K FA+ + G++
Sbjct: 62 GKTTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYSH------- 114
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L
Sbjct: 115 -RIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELT 173
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
E+ + +++ I E + ++ LV + GDMR+AI LQ+ A + GE + E V
Sbjct: 174 EDAIEAQVREIAANEGIDVTDDGVDALVFAADGDMRKAINGLQAAAVM--GETVDEETVF 231
Query: 258 EVTGVIPKPWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFH 302
+T +E +++ +D F +EDL+ E + + DQ H
Sbjct: 232 AITATARPEEVEAMVEHAIDGDFTAARAALEDLLTERGLAGGDVIDQLH 280
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 11/127 (8%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDS- 377
++ LV + GDMR+AI LQ+ A + GE + E V +T +E +++ +D
Sbjct: 196 GVDALVFAADGDMRKAINGLQAAAVM--GETVDEETVFAITATARPEEVEAMVEHAIDGD 253
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALI--LEKLAECNARLQDG 434
F +EDL+ E + + DQ H SA ++A + LE+L E + R+ +G
Sbjct: 254 FTAARAALEDLLTERGLAGGDVIDQLH---RSAWEFDVPERATVRLLERLGEVDYRITEG 310
Query: 435 ASEYIQI 441
A+E +Q+
Sbjct: 311 ANERLQL 317
>gi|294496335|ref|YP_003542828.1| replication factor C small subunit [Methanohalophilus mahii DSM
5219]
gi|292667334|gb|ADE37183.1| replication factor C small subunit [Methanohalophilus mahii DSM
5219]
Length = 318
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 93/209 (44%), Positives = 138/209 (66%), Gaps = 7/209 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP ++DV+ Q + + L+ + +LPH LF GPPG GKT+T ++ +LFGD
Sbjct: 6 WIEKYRPYRLEDVVGQSDAIERLRSYIKTNNLPHLLFSGPPGVGKTATAVSIARELFGDD 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE ELNASD+RGI V+R K+K FA+ + G FKI+ LDEAD++T AQ
Sbjct: 66 WRENFTELNASDERGIDVVRTKIKNFAKTSPIG-------GADFKIIFLDEADALTPDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ T + RF L CNY S II+P+ SRC+ +RF+PL+++ + R ++I E+E +
Sbjct: 119 SALRRTMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRPLSDDAIGKRCRHIAEKEGL 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCA 243
+E + + GDMR+AI +Q+ +
Sbjct: 179 DIADDGIEAIKYVAEGDMRKAINAVQAAS 207
>gi|320593090|gb|EFX05499.1| aaa ATPase domain containing protein [Grosmannia clavigera kw1407]
Length = 357
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 179/326 (54%), Gaps = 23/326 (7%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVS-TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKK 59
M A + + G+ + S++K +++ TS T N +PWVEKYRP +DD++ E + LK
Sbjct: 1 MPAAAKPEEKGESSTSAAKKALAATSNGTPNYELPWVEKYRPAFLDDIVGNTETIERLKI 60
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119
++PH + G PG GKT++++ QL GD Y+E +LELNASD+RGI V+R+++K
Sbjct: 61 IAKDGNMPHIIISGMPGIGKTTSVLCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKG 120
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ+ + P KIVILDEADSMT AQ ALRRTME + +TRF CN +
Sbjct: 121 FAQKKVT------LPAGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNK 174
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+PL SRC+ R+ L + ++ RL I E E V L LV ++ GDMR+AI L
Sbjct: 175 IIEPLQSRCAILRYARLTDAQVVKRLLQIIEAEQVRYSDDGLAALVFSAEGDMRQAINNL 234
Query: 240 QSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFD 299
QS G G V+ D V V+ P K+ Q + K + ++A D
Sbjct: 235 QST---HAGFGFVSGD--NVFKVVDAPHPIKV------QAMLKACHEGNVDAA-----LD 278
Query: 300 QFHDIVMLASSLSDKQKALFKALETL 325
H++ L S D +F+ +T+
Sbjct: 279 ILHELWRLGYSSHDIISTMFRVTKTM 304
>gi|50513622|pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 323
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/275 (41%), Positives = 159/275 (57%), Gaps = 21/275 (7%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
KT + +PWVEKYRP+ + D++ +E + L++ ++PH + G PG GKT+++
Sbjct: 3 KTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCL 62
Query: 87 CHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILD 144
H+L G Y + +LELNASDDRGI V+R+++K FAQ+ PP KIVILD
Sbjct: 63 AHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLH--------LPPGKHKIVILD 114
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EADSMT AQ ALRRTME + STRF CN + II+PL S+C+ R+ L++ +L R
Sbjct: 115 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKR 174
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP 264
L I + E V LE ++ T+ GDMR+AI LQS G G+VN D + P
Sbjct: 175 LLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNADNVFKIVDSP 231
Query: 265 KPWIEKLLKV-----DSFQVLEKYIEDLILEAYSA 294
P I K + + DS Q+L DL + YS+
Sbjct: 232 HPLIVKKMLLASNLEDSIQILR---TDLWKKGYSS 263
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV----- 375
LE ++ T+ GDMR+AI LQS G G+VN D + P+P I K + +
Sbjct: 190 GLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNADNVFKIVDSPHPLIVKKMLLASNLE 246
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
DS Q+L DL + YS+ + + + + + + + +++++ + R+ +G
Sbjct: 247 DSIQILR---TDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGV 303
Query: 436 SEYIQILDLGSIVIKANKTA 455
Y+Q+ + + + K N A
Sbjct: 304 GTYLQLASMLAKIHKLNNKA 323
>gi|408383246|ref|ZP_11180783.1| replication factor C small subunit [Methanobacterium formicicum DSM
3637]
gi|407814028|gb|EKF84666.1| replication factor C small subunit [Methanobacterium formicicum DSM
3637]
Length = 321
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/227 (44%), Positives = 145/227 (63%), Gaps = 10/227 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+D+V+ Q ++ LK+ ++ A++P+ +F GP G GKT+T IA + G+
Sbjct: 4 PWVEKYRPQTLDEVVGQDHIIHRLKQYINEANMPNLMFTGPAGVGKTTTAIALAKAMLGE 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+++ LELNASD RGI+ +R +K+F + A G PF+I+ LDE D+MT A
Sbjct: 64 YWKQNFLELNASDARGIETVRKDIKSFCRLKAVG--------SPFRIIFLDEVDNMTKDA 115
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME TK++ F L CNY S II P+ SRC+ FRF P+ + ++ RL+ I + E+
Sbjct: 116 QHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFAPIKGHQVIERLEIIAKAEN 175
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVT 260
V LE++V + GDMRRA+ LQS A + GE I + V +V
Sbjct: 176 VNYAPGTLESIVYFAEGDMRRAVNILQSTASM--GEEITEDIVHDVV 220
>gi|354609736|ref|ZP_09027692.1| Replication factor C small subunit [Halobacterium sp. DL1]
gi|353194556|gb|EHB60058.1| Replication factor C small subunit [Halobacterium sp. DL1]
Length = 323
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 172/298 (57%), Gaps = 17/298 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+ ++DV+ ++ L+ + DLPH LF GP GTGKT++ ++ +++GD
Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASAVSIAKEIYGDD 71
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++E LELNASD RGI V+RD++K FA+ + G++ ++++ LDEAD++T AQ
Sbjct: 72 WQENFLELNASDQRGIDVVRDRIKNFARASFGGYD--------YRVIFLDEADALTDDAQ 123
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF + ++ + L+ I +E +
Sbjct: 124 SALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFSQIDDDAVAAHLRDIAGREDL 183
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL-- 272
++ LV + GDMRRAI LQ+ + G+ + E V +T IE ++
Sbjct: 184 EYTEAGIDALVYAADGDMRRAINALQAAS--ATGDAVDEEVVYAITATARPEEIEGMVTE 241
Query: 273 KVDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMLASSLSDKQKALFKALETLVET 328
+D F ++DL+ + + DQ H V S +++A + L+ L E
Sbjct: 242 ALDGDFTAARSTLDDLLTNRGLAGGDIIDQIHRSVW---SFDVEEEAAVRLLDRLGEA 296
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL--KVDS- 377
++ LV + GDMRRAI LQ+ + G+ + E V +T IE ++ +D
Sbjct: 189 GIDALVYAADGDMRRAINALQAAS--ATGDAVDEEVVYAITATARPEEIEGMVTEALDGD 246
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F ++DL+ + + DQ H V S + ++ +L++L E + R+ +GA+
Sbjct: 247 FTAARSTLDDLLTNRGLAGGDIIDQIHRSVWS-FDVEEEAAVRLLDRLGEADFRIAEGAN 305
Query: 437 EYIQILD-LGSIVIKA 451
E +Q+ L S+ ++A
Sbjct: 306 ERVQLEALLASVALRA 321
>gi|308159615|gb|EFO62141.1| Replication factor C, sub 2 [Giardia lamblia P15]
Length = 351
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/258 (40%), Positives = 154/258 (59%), Gaps = 20/258 (7%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PW EK+RP ++D V+ Q V K+C+ ++PH L YGP GTGKT+ + A H+ FG
Sbjct: 4 PWTEKHRPMSLDRVMHQDHAVRAAKRCIESGNMPHMLLYGPAGTGKTTLIHAMMHEFFGP 63
Query: 94 -MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK---PCPPFKIVILDEADSM 149
+R R+ E NAS DRGI+++R+++K+ A+ + D K PCP F+++ILDEAD++
Sbjct: 64 RFWRARVNEFNASTDRGIKIVRERIKSIARTVIAVAPDDVKAVYPCPDFQVIILDEADAL 123
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T +QAALRR +E +++TRFC+ICNY S II P+ SRC++F F L ++ ++ RL+ IC
Sbjct: 124 TRESQAALRRIIEDFSETTRFCIICNYPSQIIAPIVSRCARFAFSSLPQSLIIDRLEAIC 183
Query: 210 EQESVMCDFK------------ALETLVETSGGDMRRAITCLQSCARL--KGGEGIVNED 255
E M + AL + S GDMR AIT LQ+ + GE + +
Sbjct: 184 YAE--MHQLRNANEKLSSSASEALGEVATLSQGDMRAAITLLQATVQFCQNMGEELSPKH 241
Query: 256 VLEVTGVIPKPWIEKLLK 273
V + G IP I L++
Sbjct: 242 VYLLAGKIPDELIASLIE 259
>gi|297620154|ref|YP_003708259.1| Replication factor C [Methanococcus voltae A3]
gi|297379131|gb|ADI37286.1| Replication factor C [Methanococcus voltae A3]
Length = 314
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 97/224 (43%), Positives = 139/224 (62%), Gaps = 10/224 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP T+ +++ Q+E++ LK + +PH LF G PG GKT+ + L+GD
Sbjct: 4 PWVEKYRPTTLSEIVGQKEIIERLKNYVEKQSMPHLLFSGSPGIGKTTAALCLAKDLYGD 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+RE LELN+SD+RGI VIR KVK FA+ G PFK++ LDE+D++T A
Sbjct: 64 DWRENFLELNSSDERGIDVIRTKVKDFARTKPIG-------DAPFKVIFLDESDALTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTMEK + RF L CNY S II P+ SRC+ FRF PL +L + YI E E+
Sbjct: 117 QNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDVLDYMNYISENEN 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
+ + + ++ S GDMR+++ LQ+ A + +++ED++
Sbjct: 177 ITIEKSGSDAIIYVSEGDMRKSVNVLQTAAAVS---NVIDEDIV 217
>gi|448531306|ref|ZP_21620993.1| replication factor C small subunit [Halorubrum hochstenium ATCC
700873]
gi|445707263|gb|ELZ59121.1| replication factor C small subunit [Halorubrum hochstenium ATCC
700873]
Length = 327
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 146/239 (61%), Gaps = 12/239 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
W+EKYRP+T+DD+ Q E+V L+ ++ D+PH LF GP G GKT+ A +++G D
Sbjct: 18 WIEKYRPQTLDDIHGQSEIVERLQSYIAQDDVPHLLFSGPAGIGKTTAATAIAREIYGED 77
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD RGI V+RD++K FA+ + G F+IV LDEADS+T A
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG---------DFRIVFLDEADSLTDDA 128
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL++ + ++ I E
Sbjct: 129 QSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAED 188
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
+ + ++ LV + GDMRRAI LQ+ A G+ + E V +T IE ++
Sbjct: 189 IEVTDEGIDALVYAADGDMRRAINSLQAAATT--GDVVDEEAVYAITATARPEEIESMV 245
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VD 376
+ ++ LV + GDMRRAI LQ+ A G+ + E V +T IE ++
Sbjct: 194 EGIDALVYAADGDMRRAINSLQAAATT--GDVVDEEAVYAITATARPEEIESMVTDALNG 251
Query: 377 SFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
F ++ L+ E + + DQ H V LS+++ ++E++ E + R+ +GA
Sbjct: 252 DFARARSTLDTLLTETGMAGGDVIDQLHRSVWE-FELSEREAVRLMERIGEADYRIAEGA 310
Query: 436 SEYIQ 440
+E +Q
Sbjct: 311 NEQVQ 315
>gi|15991286|dbj|BAB69675.1| replication factor C 40kDa subunit [Oryza sativa Japonica Group]
gi|116310007|emb|CAH67033.1| OSIGBa0139P06.6 [Oryza sativa Indica Group]
gi|218195393|gb|EEC77820.1| hypothetical protein OsI_17026 [Oryza sativa Indica Group]
Length = 335
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 123/307 (40%), Positives = 176/307 (57%), Gaps = 21/307 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP + DV+ + V+ L+ ++P+ + GPPGTGKT+++++ H+L G
Sbjct: 17 IPWVEKYRPTRVADVVGNSDAVARLQVIARDGNMPNLILSGPPGTGKTTSILSLAHELLG 76
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YRE +LELNASDDRG+ V+R+K+K FAQ+ + Q G+ KIVILDEADSMT
Sbjct: 77 PSYREAVLELNASDDRGLDVVRNKIKMFAQKKVT--LQPGR----HKIVILDEADSMTSG 130
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME + +TRF L CN S II+P+ SRC+ RF L++ +L RL + E
Sbjct: 131 AQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAE 190
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
V + LE ++ T+ GDMR+A+ LQ A + G + E+V +V P P K
Sbjct: 191 KVPYVPEGLEAIIFTADGDMRQALNNLQ--ATVSGFRFVNQENVFKVCDQ-PHPLHVK-- 245
Query: 273 KVDSFQVLEKYIEDLILEAYSA-TQLFDQFHD----IVMLASSLSDKQKALFKALETLVE 327
+++ ++ EA SA QL+D + I L + + A + LE L E
Sbjct: 246 -----NMVKNVLDGKFDEACSALKQLYDLGYSPTDIITTLFRVIKNYDMAEYLKLELLKE 300
Query: 328 TSGGDMR 334
T MR
Sbjct: 301 TGFAHMR 307
>gi|323331653|gb|EGA73067.1| Rfc4p [Saccharomyces cerevisiae AWRI796]
Length = 264
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/261 (42%), Positives = 153/261 (58%), Gaps = 18/261 (6%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
KT + +PWVEKYRP+ + D++ +E + L++ ++PH + G PG GKT+++
Sbjct: 3 KTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCL 62
Query: 87 CHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILD 144
H+L G Y + +LELNASDDRGI V+R+++K FAQ+ PP KIVILD
Sbjct: 63 AHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLH--------LPPGKHKIVILD 114
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EADSMT AQ ALRRTME + STRF CN + II+PL SRC+ R+ L++ +L R
Sbjct: 115 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKR 174
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP 264
L I + E V LE ++ T+ GDMR+AI LQS G G+VN D + P
Sbjct: 175 LLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNADNVFKIVDSP 231
Query: 265 KPWIEKLLKV-----DSFQVL 280
P I K + + DS Q+L
Sbjct: 232 HPLIVKKMLLASNLEDSIQIL 252
>gi|321261085|ref|XP_003195262.1| subunit of heteropentameric Replication factor C (RF-C); Rfc3p
[Cryptococcus gattii WM276]
gi|317461735|gb|ADV23475.1| Subunit of heteropentameric Replication factor C (RF-C), putative;
Rfc3p [Cryptococcus gattii WM276]
Length = 347
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/225 (46%), Positives = 143/225 (63%), Gaps = 13/225 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD++ + V LK +LPH + G PG GKT+++ H L G
Sbjct: 26 MPWVEKYRPVLLDDIVGNSDTVERLKVIAEDGNLPHIIISGMPGIGKTTSIHCLAHALLG 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
+ Y+E +LELNASD+RGI V+R+K+K+FAQ+ + PP KI+ILDEADSMT
Sbjct: 86 EAYKEGVLELNASDERGIDVVRNKIKSFAQRKVT--------LPPGRHKIIILDEADSMT 137
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME + +TRF L CN + II+P+ SRC+ R+ L + +L RL+ IC+
Sbjct: 138 AGAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRYSKLNDAEVLKRLKEICD 197
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255
ESV + + L L+ T+ GDMR+AI LQS G G V++D
Sbjct: 198 MESVKYNDEGLAALIFTAEGDMRQAINNLQSTW---SGFGFVSQD 239
>gi|451927566|gb|AGF85444.1| replication factor C small subunit [Moumouvirus goulette]
Length = 346
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/315 (37%), Positives = 171/315 (54%), Gaps = 16/315 (5%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
S +T + + K + K +PW EKYRP ID +I +E+ LK + LPH LF+GP
Sbjct: 2 SYYETVLDKNEKGKQKNIPWTEKYRPHDIDQIISHKEITRSLKNFIKSKTLPHLLFFGPS 61
Query: 76 GTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
G+GKTST+ +L+G IL+LNAS++RGI+ +R K+K F S F P
Sbjct: 62 GSGKTSTIKCCAAKLYGSYINCMILQLNASNERGIETVRTKIKNFVSNKNSIF----LPV 117
Query: 136 P---PFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
FK+VILDE DSMT AQ LR+T+EK + +TRFCLICN + I L SRC+ FR
Sbjct: 118 ELRNIFKLVILDEIDSMTVEAQGMLRQTIEKNSSTTRFCLICNDIDKINLALQSRCALFR 177
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
F PL N M RL+ IC E+V ++ ++ S GDMR AI LQ L + I
Sbjct: 178 FSPLNNNEMHKRLKDICNIENVKHSKGVIDAIINISKGDMRSAINTLQH-VNLTINDLIT 236
Query: 253 NEDVLEVTGVIPKPWIEKLLKV-----DSFQVLEKYIEDLI-LEAYSATQLFDQFHDI-- 304
DV +++G I ++ V + L+KY++ +I + + +F+ ++
Sbjct: 237 VNDVYKISGHCMPELILEIFNVLLELSKKKKYLDKYVDKIINIVVENNITIFNLLSELKN 296
Query: 305 VMLASSLSDKQKALF 319
++L S L D QK
Sbjct: 297 IVLDSDLLDDQKIFL 311
>gi|45187984|ref|NP_984207.1| ADR111Wp [Ashbya gossypii ATCC 10895]
gi|44982768|gb|AAS52031.1| ADR111Wp [Ashbya gossypii ATCC 10895]
gi|374107422|gb|AEY96330.1| FADR111Wp [Ashbya gossypii FDAG1]
Length = 321
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 113/269 (42%), Positives = 157/269 (58%), Gaps = 14/269 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK + DV+ E V L++ ++PH + G PG GKT+++ H+L G
Sbjct: 10 LPWVEKYRPKLLKDVVGNDETVERLQQIARDGNMPHMIISGLPGIGKTTSIHCLAHELLG 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
D Y + +LELNASDDRGI V+R+++K FAQ+ + PP KI+ILDEADSMT
Sbjct: 70 DAYSQAVLELNASDDRGIDVVRNQIKQFAQKKCT--------LPPGKHKIIILDEADSMT 121
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME + +TRF CN + II+PL SRC+ R+ L++ +L RL I +
Sbjct: 122 SGAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLFEIIK 181
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW-IE 269
E+V LE L+ T+ GDMR+AI LQS G +VN D + P P I+
Sbjct: 182 AENVQYTNDGLEALIFTAEGDMRQAINNLQSTV---AGFTLVNGDNVFKIVDSPHPLVIK 238
Query: 270 KLLKVDSFQVLEKYIEDLILEAYSATQLF 298
K+L + Y+ +L + YSA +
Sbjct: 239 KMLLSATLDESLNYLRELWGKGYSAVDII 267
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 73/152 (48%), Gaps = 18/152 (11%)
Query: 305 VMLASSLSDKQ--KALFK------------ALETLVETSGGDMRRAITCLQSCARLKGGE 350
++ S LSD+Q K LF+ LE L+ T+ GDMR+AI LQS G
Sbjct: 161 ILRYSKLSDEQVLKRLFEIIKAENVQYTNDGLEALIFTAEGDMRQAINNLQSTV---AGF 217
Query: 351 GIVNEDVLEVTGVIPNPW-IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSA 409
+VN D + P+P I+K+L + Y+ +L + YSA + ++ +
Sbjct: 218 TLVNGDNVFKIVDSPHPLVIKKMLLSATLDESLNYLRELWGKGYSAVDIITTCFRVMKNL 277
Query: 410 SSLSDKQKALILEKLAECNARLQDGASEYIQI 441
+ + + + +++++ + R+ +G Y+Q+
Sbjct: 278 TEIKEPLRLEMIKEIGFTHMRILEGVGTYLQL 309
>gi|123399546|ref|XP_001301493.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121882680|gb|EAX88563.1| hypothetical protein TVAG_409150 [Trichomonas vaginalis G3]
Length = 324
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/288 (38%), Positives = 161/288 (55%), Gaps = 15/288 (5%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ +DDV+ V+ L+ + ++P+ + GPPG GKT++++A CHQL GD
Sbjct: 6 PWVEKYRPRVLDDVVGNTAVIERLRALAAEGNIPNLILTGPPGCGKTTSLLALCHQLLGD 65
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
++ ++ELNASDDRGI V+R +K FA++ + P K+V+LDE+DSMT AA
Sbjct: 66 KEKDAVIELNASDDRGIDVVRKNIKEFAKRHVA------LPEGRHKVVLLDESDSMTDAA 119
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q A+RR ME TK+TRF CN +I+P+ SRC+ RF + EN + RL ICE E
Sbjct: 120 QQAMRRIMENYTKTTRFVFACNQSEKVIEPIQSRCAIVRFSRVEENEIAARLMKICELEG 179
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSC-ARLKGGEGIVNEDVLEVTGVIPKPW----I 268
+ + + TL + GDMR AI LQS R G+V ++ + T IP P I
Sbjct: 180 FKPESEGIATLARLADGDMRTAINGLQSTYVRY----GLVTQENVLATVDIPNPTAIADI 235
Query: 269 EKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
L D+F+ + L +S + + V ++ +K K
Sbjct: 236 FTALSTDNFRNALIILNGLEKRGHSPSDIVKSLFSFVRRTDTIQEKLK 283
Score = 38.5 bits (88), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 9/141 (6%)
Query: 320 KALETLVETSGGDMRRAITCLQSC-ARLKGGEGIVNEDVLEVTGVIPNPW----IEKLLK 374
+ + TL + GDMR AI LQS R G+V ++ + T IPNP I L
Sbjct: 185 EGIATLARLADGDMRTAINGLQSTYVRY----GLVTQENVLATVDIPNPTAIADIFTALS 240
Query: 375 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
D+F+ + L +S + + V ++ +K K +L+++ R+ G
Sbjct: 241 TDNFRNALIILNGLEKRGHSPSDIVKSLFSFVRRTDTIQEKLKLNLLKEIGLAQMRVSQG 300
Query: 435 ASEYIQILDLGSIVIKANKTA 455
S +Q+ L + + K A
Sbjct: 301 MSSNLQLDGLLATLFKVYHQA 321
>gi|357165331|ref|XP_003580347.1| PREDICTED: replication factor C subunit 2-like [Brachypodium
distachyon]
Length = 333
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 123/309 (39%), Positives = 174/309 (56%), Gaps = 25/309 (8%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP + DV+ + VS L+ ++P+ + GPPGTGKT++++A H++ G
Sbjct: 16 IPWVEKYRPSRVADVVGNSDAVSRLEVIARDGNMPNLILSGPPGTGKTTSILALAHEMLG 75
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
YRE +LELNASDDRG+ V+R+K+K FAQ+ + PP KIVILDEADSMT
Sbjct: 76 PSYREGVLELNASDDRGLDVVRNKIKMFAQKKVT--------LPPGRHKIVILDEADSMT 127
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME + +TRF L CN S II+P+ SRC+ RF L++ +L RL +
Sbjct: 128 TGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVA 187
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEK 270
E V + LE ++ T+ GDMR+A+ LQ A + G + E+V +V P P K
Sbjct: 188 AEKVPYVPEGLEAIIFTADGDMRQALNNLQ--ATVSGFRFVNQENVFKVCDQ-PHPLHVK 244
Query: 271 LLKVDSFQVLEKYIEDLILEAYSA-TQLFDQFHD----IVMLASSLSDKQKALFKALETL 325
+++ ++ EA S QL+D + I L + + A + LE L
Sbjct: 245 -------NMVKNVLDGKFDEACSGLKQLYDLGYSPTDIITTLFRVVKNYDMAEYLKLELL 297
Query: 326 VETSGGDMR 334
ET MR
Sbjct: 298 KETGFAHMR 306
>gi|448498600|ref|ZP_21610886.1| replication factor C small subunit [Halorubrum coriense DSM 10284]
gi|445698349|gb|ELZ50394.1| replication factor C small subunit [Halorubrum coriense DSM 10284]
Length = 327
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 135/210 (64%), Gaps = 10/210 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
W+EKYRP+T+DDV Q+E+V L+ ++ D+PH LF GP G GKT+ A +++G D
Sbjct: 18 WIEKYRPQTLDDVHGQEEIVERLQSYIAQDDVPHLLFSGPAGIGKTTAATAIAREIYGED 77
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD RGI V+RD++K FA+ + G F+IV LDEADS+T A
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG---------DFRIVFLDEADSLTDDA 128
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL++ + ++ I E
Sbjct: 129 QSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVSGMVREIAAAEE 188
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCA 243
+ ++ LV + GDMRRAI LQ+ A
Sbjct: 189 IEVTDAGVDALVYAADGDMRRAINSLQAAA 218
Score = 44.3 bits (103), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 7/124 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDS 377
++ LV + GDMRRAI LQ+ A G+ + + V +T IE ++
Sbjct: 195 GVDALVYAADGDMRRAINSLQAAA--TTGDVVDEKAVYAITATARPEEIESMVTDALSGD 252
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F ++ L+ E + + DQ H V LS+++ ++E++ E + R+ +GA+
Sbjct: 253 FARARSTLDTLLTETGMAGGDVIDQLHRSVWE-FDLSEREAVRLMERIGEADYRIAEGAN 311
Query: 437 EYIQ 440
E +Q
Sbjct: 312 EQVQ 315
>gi|288560386|ref|YP_003423872.1| replication factor C small subunit RfcS [Methanobrevibacter
ruminantium M1]
gi|288543096|gb|ADC46980.1| replication factor C small subunit RfcS [Methanobrevibacter
ruminantium M1]
Length = 314
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 108/276 (39%), Positives = 158/276 (57%), Gaps = 21/276 (7%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+DD++ Q+ +V LKK + +P+ +F GP G GKT++ +A + GD
Sbjct: 4 PWVEKYRPQTLDDIVGQKHIVESLKKYVDQGSMPNLMFTGPAGVGKTTSALALVKAILGD 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R+ LELNASD RGI+ +R +K F + G PF+I+ LDE D+MT A
Sbjct: 64 YWRQNFLELNASDARGIETVRTNIKNFCRLKPVG--------APFRIIFLDEVDNMTKDA 115
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME TK+ F L CNY S II P+ SRC+ FRF P+ + RL+YI E E
Sbjct: 116 QHALRREMEMYTKTCSFILSCNYSSKIIDPIQSRCAIFRFAPIKAEEIADRLKYIAEAEG 175
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK 273
+ KA+ET+V GDMR+++ LQS A G + ED V V+ K +++ +
Sbjct: 176 CEYEEKAIETIVLFGEGDMRKSVNMLQSAA----STGNITED--HVYEVVTKARPQEIKE 229
Query: 274 VDSFQVLEKYIED-------LILEAYSATQLFDQFH 302
+ + K++E +IL+ S + +Q +
Sbjct: 230 MVDAALRGKFMESRNILRDVMILQGTSGEDMVNQIY 265
>gi|145353045|ref|XP_001420841.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581076|gb|ABO99134.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 334
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 116/274 (42%), Positives = 167/274 (60%), Gaps = 19/274 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPKT+DD++ + V ++ + +P+ +F GPPG GKTS + +L G
Sbjct: 1 MPWVEKYRPKTLDDLVGNDDAVDRMRTMVRSGFMPNLIFSGPPGCGKTSAIGVLARELLG 60
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D Y+E +LE+NASD+RGI V+R+K+K FAQ+ + G+ K+VILDEADSMT A
Sbjct: 61 DKYKEAVLEMNASDERGIDVVRNKIKMFAQKKVT--LAPGRT----KLVILDEADSMTTA 114
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ A+RRTME + +TRF L CN +I+P+ SRC+ RF L + +L RL + E E
Sbjct: 115 AQQAMRRTMEIYSATTRFALACNTSEKVIEPIQSRCAIVRFGKLTDAQVLKRLMTVVEAE 174
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
V K LE +V T+ GDMR+A+ LQS A G G+VNE+ + P P I +
Sbjct: 175 KVTYVPKGLEAIVFTADGDMRQALNNLQSTAL---GFGMVNEENVFRVCDQPHPNIVR-- 229
Query: 273 KVDSFQ-VLEKYIEDLILEAYSATQ-LFDQFHDI 304
D+F +L+ ++D AY+ + L DQ + +
Sbjct: 230 --DAFSFILQGNVDD----AYARLKSLHDQGYSV 257
>gi|444320537|ref|XP_004180925.1| hypothetical protein TBLA_0E03520 [Tetrapisispora blattae CBS 6284]
gi|387513968|emb|CCH61406.1| hypothetical protein TBLA_0E03520 [Tetrapisispora blattae CBS 6284]
Length = 324
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 105/240 (43%), Positives = 145/240 (60%), Gaps = 13/240 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK + D++ E + L++ ++PH + G PG GKT+++ H+L G
Sbjct: 12 LPWVEKYRPKVLKDIVGNNETIDRLQQIALDGNMPHMIISGMPGIGKTTSIHCLAHELLG 71
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
D Y++ +LELNASDDRGI+V+R+++K FAQ+ PP KI+ILDEADSMT
Sbjct: 72 DSYKQAVLELNASDDRGIEVVRNQIKHFAQKKCH--------LPPGKNKIIILDEADSMT 123
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME + +TRF CN + II+PL SRC+ R+ L++ +L RL I E
Sbjct: 124 SGAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYNKLSDEEVLKRLLQIIE 183
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEK 270
E+V LE ++ T+ GDMR+AI LQS G +VN D + P P I K
Sbjct: 184 LENVQYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHTLVNGDNVFKIVDSPHPLIVK 240
>gi|366997707|ref|XP_003683590.1| hypothetical protein TPHA_0A00710 [Tetrapisispora phaffii CBS 4417]
gi|357521885|emb|CCE61156.1| hypothetical protein TPHA_0A00710 [Tetrapisispora phaffii CBS 4417]
Length = 325
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/270 (41%), Positives = 154/270 (57%), Gaps = 17/270 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP + D++ ++ + LK ++PH + G PG GKT+++ H+L G
Sbjct: 10 LPWVEKYRPHLLKDIVGNEDTIERLKHIAKDGNMPHMIISGLPGIGKTTSIHCLAHELLG 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D Y + +LELNASDDRGI V+R+++K FAQ+ P KI+ILDEADSMT
Sbjct: 70 DSYSQAVLELNASDDRGIDVVRNQIKHFAQKKCH------LPTGKHKIIILDEADSMTAG 123
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME + +TRF CN + II+PL SRC+ R+ L++ +L RL I + E
Sbjct: 124 AQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYTKLSDEQVLKRLLEITKAE 183
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
V LE L+ T+ GDMR+AI LQS G +VN D + P P I K +
Sbjct: 184 DVKYTNDGLEALIFTAEGDMRQAINNLQSTV---AGHSLVNGDNVFKIVDSPHPLIVKKM 240
Query: 273 KV-----DSFQVLEKYIEDLILEAYSATQL 297
+ DS +L K + D + YSA +
Sbjct: 241 ILAPTLDDSLLILRKELWD---KGYSAVDI 267
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV----- 375
LE L+ T+ GDMR+AI LQS G +VN D + P+P I K + +
Sbjct: 191 GLEALIFTAEGDMRQAINNLQSTV---AGHSLVNGDNVFKIVDSPHPLIVKKMILAPTLD 247
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
DS +L K + D + YSA + + + L + Q+ +++++ + R+ +G
Sbjct: 248 DSLLILRKELWD---KGYSAVDIVTTSFRVTKTLYELKEPQRLDMIKEIGITHMRILEGV 304
Query: 436 SEYIQI 441
Y+Q+
Sbjct: 305 GTYLQL 310
>gi|448450551|ref|ZP_21592370.1| replication factor C small subunit [Halorubrum litoreum JCM 13561]
gi|448522065|ref|ZP_21618330.1| replication factor C small subunit [Halorubrum distributum JCM
10118]
gi|445702339|gb|ELZ54293.1| replication factor C small subunit [Halorubrum distributum JCM
10118]
gi|445811665|gb|EMA61668.1| replication factor C small subunit [Halorubrum litoreum JCM 13561]
Length = 327
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 146/239 (61%), Gaps = 12/239 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
W+EKYRP+T+DD+ Q+E+V L+ ++ D+PH LF GP G GKT+ A +++G D
Sbjct: 18 WIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGVGKTTAATAIAREIYGED 77
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD RGI V+RD++K FA+ + G F+IV LDE+DS+T A
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG---------DFRIVFLDESDSLTDDA 128
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL++ + ++ I E
Sbjct: 129 QSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAEE 188
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
+ ++ LV + GDMRRAI LQ+ A G+ + E V +T IE ++
Sbjct: 189 IEVTDAGVDALVYAADGDMRRAINSLQAAA--TTGDVVDEEAVYAITATARPEEIESMV 245
Score = 46.2 bits (108), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDS 377
++ LV + GDMRRAI LQ+ A G+ + E V +T IE ++
Sbjct: 195 GVDALVYAADGDMRRAINSLQAAA--TTGDVVDEEAVYAITATARPEEIESMVTDALNGD 252
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F ++ L+ E + + DQ H V LS+++ ++E++ E + R+ +GA+
Sbjct: 253 FARARSTLDTLLTETGMAGGDVIDQLHRSVWE-FELSEREAVRLMERIGEADYRIAEGAN 311
Query: 437 EYIQILDL 444
E +Q+ L
Sbjct: 312 EQVQLESL 319
>gi|452820599|gb|EME27639.1| replication factor C subunit 2/4 [Galdieria sulphuraria]
Length = 321
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 116/253 (45%), Positives = 152/253 (60%), Gaps = 17/253 (6%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPKT+D+V+ +VVS L+ + G LPH L GPPG GKT+ ++ QL G+
Sbjct: 4 PWVEKYRPKTLDEVVGNPQVVSRLQAVVHGGSLPHLLLSGPPGCGKTTMILCLARQLLGE 63
Query: 94 -MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ + +LELNASDDRGI VIR KVKTFAQQ S P KIVILDEADSMT
Sbjct: 64 EWFSQAVLELNASDDRGIDVIRSKVKTFAQQKMS------LPSGKHKIVILDEADSMTEG 117
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME +TRF L CN S II+P+ SRC+ R + L ++ + RL+ + E
Sbjct: 118 AQQALRRTMEIYATTTRFALACNTPSKIIEPIQSRCAVVRLRRLEDSEIAERLEQVLRLE 177
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
+V + LE ++ T+ GDMR A+ Q A + G + E+V +V P P + K
Sbjct: 178 NVEWENSGLEAILFTADGDMRNALNNAQ--ATVCGFGKLSQENVFKVCDQ-PHPNLVK-- 232
Query: 273 KVDSFQVLEKYIE 285
Q+LE +E
Sbjct: 233 -----QILESALE 240
>gi|358377812|gb|EHK15495.1| hypothetical protein TRIVIDRAFT_38974 [Trichoderma virens Gv29-8]
Length = 391
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 111/247 (44%), Positives = 154/247 (62%), Gaps = 17/247 (6%)
Query: 13 DAPSSSK----TSVSTSGK--TRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKC 60
D P S ++ +T GK N PV PWVEKYRP T+DDV Q++++ + K
Sbjct: 11 DGPGPSADITFSAEATKGKRSAANLPVEAEDTLPWVEKYRPVTLDDVSGHQDILATINKF 70
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKT 119
+ LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++KT
Sbjct: 71 VESNRLPHLLLYGPPGTGKTSTILALARRIYGTANMRQMVLELNASDDRGIDVVREQIKT 130
Query: 120 FAQQ----TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175
FA + FK++ILDEAD+MT+ AQ ALRR MEK T +TRFC+I N
Sbjct: 131 FASTKQIFSMGSSAAKSSSIAGFKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIAN 190
Query: 176 YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRA 235
Y + L SRC++FRF PL E + ++ + E+E+V +A++ LV+ S GDMRRA
Sbjct: 191 YAHKLSPALLSRCTRFRFSPLKEGDIRVLVEKVVEEENVKIQGEAVDALVKLSKGDMRRA 250
Query: 236 ITCLQSC 242
+ LQ+C
Sbjct: 251 LNVLQAC 257
>gi|225557253|gb|EEH05539.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 424
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 97/212 (45%), Positives = 140/212 (66%), Gaps = 5/212 (2%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DM 94
VEKYRP ++++V +++S + + + LPH L YGPPGTGKTST++A +++G +
Sbjct: 73 VEKYRPNSLEEVSGHHDIISTINRFIDKNRLPHLLLYGPPGTGKTSTILALARRIYGVNN 132
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQ----TASGFNQDGKPCPPFKIVILDEADSMT 150
R+ +LELNASDDRGI V+RD++KTFA + + + FK++ILDEAD+MT
Sbjct: 133 MRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSVAPTTKSESTLGAFKLIILDEADAMT 192
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + + + E
Sbjct: 193 ATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEEDIRVLVDQVVE 252
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+E V +A+++LV+ S GDMRRA+ LQ+C
Sbjct: 253 KEQVRIQPEAIDSLVQLSKGDMRRALNVLQAC 284
>gi|312136661|ref|YP_004003998.1| replication factor c small subunit [Methanothermus fervidus DSM
2088]
gi|311224380|gb|ADP77236.1| replication factor C small subunit [Methanothermus fervidus DSM
2088]
Length = 318
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 112/273 (41%), Positives = 157/273 (57%), Gaps = 16/273 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPK +DDV+ Q+ VVS LKK + LP+ LF GP G GKT+ +A ++ G+
Sbjct: 5 WTEKYRPKVLDDVVNQKHVVSRLKKYVEKKTLPNLLFAGPAGVGKTTVALALAREILGEY 64
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC-PPFKIVILDEADSMTHAA 153
+++ LELNASD RGI +R ++K F + +P PF+IV LDE D+MT A
Sbjct: 65 WQQNFLELNASDARGIDTVRTEIKNFCRL---------RPINAPFRIVFLDEVDNMTRDA 115
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME ++ F L CNY S II+P+ SRC FRF PL ++ RL+YICE+E+
Sbjct: 116 QQALRREMEMYAETATFILSCNYSSKIIEPVQSRCVVFRFLPLKSKDIIKRLKYICEKEN 175
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP----KPWIE 269
V + KAL+ +V + GD+R+AI LQ+ A L + I +D+ +V + I
Sbjct: 176 VDYEEKALDAIVYFAEGDLRKAINILQAAAAL--DKTITEDDIYDVVSKARPEDVRKMIV 233
Query: 270 KLLKVDSFQVLEKYIEDLILEAYSATQLFDQFH 302
K L + + E E +I S L DQ +
Sbjct: 234 KALNGEFLKAREMLREIMISYGVSGEDLIDQIY 266
>gi|226493143|ref|NP_001149058.1| LOC100282678 [Zea mays]
gi|195624372|gb|ACG34016.1| replication factor C subunit 4 [Zea mays]
Length = 331
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 176/307 (57%), Gaps = 21/307 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP + DV+ + V+ L+ ++P+ + GPPGTGKT++++A H+L G
Sbjct: 13 IPWVEKYRPSRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 72
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR+ +LELNASDDRG+ V+R+K+K FAQ+ + Q G+ KIVILDEADSMT
Sbjct: 73 PSYRDAVLELNASDDRGLDVVRNKIKMFAQKKVT--LQPGR----HKIVILDEADSMTSG 126
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME + +TRF L CN S II+P+ SRC+ RF L++ +L RL + E
Sbjct: 127 AQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAE 186
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW-IEKL 271
V + LE ++ T+ GDMR+A+ LQ A G I E+V +V P P ++ +
Sbjct: 187 KVPYAPEGLEAIIFTADGDMRQALNNLQ--ATFSGFRFINQENVFKVCDQ-PHPLHVKNM 243
Query: 272 LKVDSFQVLEKYIEDLILEAYSATQLFDQFHD----IVMLASSLSDKQKALFKALETLVE 327
+K VL+ ++ + QL+D + I L + + A + LE L E
Sbjct: 244 VK----NVLDGKFDE---PCSALKQLYDLGYSPTDIITTLFRVVKNYDMAEYLKLEMLKE 296
Query: 328 TSGGDMR 334
T MR
Sbjct: 297 TGFAHMR 303
>gi|302413517|ref|XP_003004591.1| replication factor C subunit 3 [Verticillium albo-atrum VaMs.102]
gi|261357167|gb|EEY19595.1| replication factor C subunit 3 [Verticillium albo-atrum VaMs.102]
Length = 391
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 147/237 (62%), Gaps = 14/237 (5%)
Query: 20 TSVSTSGK--TRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLF 71
+S +T GK N PV PWVEKYRP T+ DV ++++ + K + LPH L
Sbjct: 21 SSEATKGKRSAANLPVEAEDSLPWVEKYRPATLADVSGHHDILATINKFVDKNRLPHLLL 80
Query: 72 YGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQ-----TA 125
YGPPGTGKTST++A +++G + R+ +LELNASDDRGI V+R+++KTFA +A
Sbjct: 81 YGPPGTGKTSTILALARRIYGPENVRQMVLELNASDDRGIDVVREQIKTFASTKQIFTSA 140
Query: 126 SGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLT 185
+ +K+++LDEAD+MT+ AQ ALRR MEK T +TRFC+I NY + L
Sbjct: 141 RSGSGSSSGAAGYKLIVLDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALL 200
Query: 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
SRC++FRF PL E + + + ++E V A + LV + GDMRRA+ LQ+C
Sbjct: 201 SRCTRFRFSPLKEGDIRVLVDRVVDEEGVRIRPDATDALVRLAKGDMRRALNVLQAC 257
>gi|307353132|ref|YP_003894183.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
gi|307156365|gb|ADN35745.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
Length = 324
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 110/286 (38%), Positives = 160/286 (55%), Gaps = 13/286 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPKT+DDV+ Q+E+V+ LK + LPH LF GP G GKT++ +A + FG+
Sbjct: 8 WTEKYRPKTLDDVVGQKEIVARLKSYVKTGSLPHLLFTGPAGIGKTTSAVALAREFFGEN 67
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++ ELNASD+RGI V+R+++K FA+ G FKI+ LDEAD++T+ AQ
Sbjct: 68 WQVNFRELNASDERGIDVVRNQIKQFARTAPMG-------GAEFKILFLDEADALTNDAQ 120
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTME + RF L CNY S II P+ SRC+ +RF+PL + L I + E +
Sbjct: 121 AALRRTMENYAYTCRFILSCNYSSKIIDPIQSRCALYRFRPLDREAVTEELNRIAKTEGL 180
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
A+ ++ + GDMR+AI LQ A + I E + E+T I +LL +
Sbjct: 181 SITEDAMSAIIYVAQGDMRKAINALQGGAII--SPEIKEEMIYEITSTARPDEIRELLSI 238
Query: 275 ---DSFQVLEKYIEDLIL-EAYSATQLFDQFHDIVMLASSLSDKQK 316
+F E + LI + +L +QF+ ++ + K K
Sbjct: 239 IMDGNFNAAEHKLNGLITGRGIAPLELLNQFYRTLIDNQEIDRKMK 284
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
A+ ++ + GDMR+AI LQ A + I E + E+T I +LL + +
Sbjct: 186 AMSAIIYVAQGDMRKAINALQGGAII--SPEIKEEMIYEITSTARPDEIRELLSIIMDGN 243
Query: 378 FQVLEKYIEDLIL-EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F E + LI + +L +QF+ ++ + K K ++ L + + R+ +GA+
Sbjct: 244 FNAAEHKLNGLITGRGIAPLELLNQFYRTLIDNQEIDRKMKVEMISHLGDADFRISEGAN 303
Query: 437 EYIQI 441
IQ+
Sbjct: 304 PNIQM 308
>gi|255712733|ref|XP_002552649.1| KLTH0C09900p [Lachancea thermotolerans]
gi|238934028|emb|CAR22211.1| KLTH0C09900p [Lachancea thermotolerans CBS 6340]
Length = 322
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 109/269 (40%), Positives = 161/269 (59%), Gaps = 16/269 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP + D++ +E ++ L++ ++PH + G PG GKT+++ H+L G
Sbjct: 10 LPWVEKYRPHLLKDIVGNEETITRLQQIAQDGNMPHLIISGLPGIGKTTSVSCLAHELLG 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
+ Y + +LELNASDDRGI V+R+++K FAQ+ S PP KIVILDEADSMT
Sbjct: 70 NAYSQAVLELNASDDRGIDVVRNQIKQFAQKKCS--------LPPGRHKIVILDEADSMT 121
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME + +TRF CN + II+PL SRC+ R+ L ++ +L RL + +
Sbjct: 122 AGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLQDDQVLRRLLEVIQ 181
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPKPWI- 268
E+V LE ++ T+ GDMR+A+ LQS G G+VN E+V ++ P P I
Sbjct: 182 AENVQYTNDGLEAIIFTAEGDMRQALNNLQSTV---AGYGLVNGENVFKIVDS-PHPLIV 237
Query: 269 EKLLKVDSFQVLEKYIEDLILEAYSATQL 297
+++L S ++L + YSA +
Sbjct: 238 KRMLLAPSLDESLALFKELWNKGYSAVDI 266
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPNPWI-EKLLKVDSF 378
LE ++ T+ GDMR+A+ LQS G G+VN E+V ++ P+P I +++L S
Sbjct: 191 GLEAIIFTAEGDMRQALNNLQSTV---AGYGLVNGENVFKIVDS-PHPLIVKRMLLAPSL 246
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
++L + YSA + + + + + + ++ ++ + R+ +G Y
Sbjct: 247 DESLALFKELWNKGYSAVDIVTTCFRVTKNLDEIKEAVRLEMIREIGFAHMRILEGVGTY 306
Query: 439 IQI 441
+Q+
Sbjct: 307 LQL 309
>gi|260820974|ref|XP_002605809.1| hypothetical protein BRAFLDRAFT_123856 [Branchiostoma floridae]
gi|229291144|gb|EEN61819.1| hypothetical protein BRAFLDRAFT_123856 [Branchiostoma floridae]
Length = 362
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 109/249 (43%), Positives = 152/249 (61%), Gaps = 10/249 (4%)
Query: 12 KDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLF 71
KD+ K TSG + +PWVEKYRP + DV+ ++ VS L+ ++P+ +
Sbjct: 21 KDSSKVDKAKPGTSGTSSGYELPWVEKYRPAKLCDVVGNEDTVSRLEVFSQQGNMPNIII 80
Query: 72 YGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131
G PG GKT++++ L G Y++ +LELNAS+DRGI V+R+K+K FAQQ +
Sbjct: 81 AGSPGIGKTTSILCLARTLLGPAYKDAVLELNASNDRGIDVVRNKIKMFAQQKVT----- 135
Query: 132 GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
P KI+ILDEADSMT AQ ALRRTME +K+TRF L CN II+ + SRC+
Sbjct: 136 -LPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEAIQSRCAVL 194
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
R+ L +N +L RL Y+CE+E+V LE ++ T+ GDMR+A+ LQS G G
Sbjct: 195 RYSKLTDNQILERLLYVCEKENVEHTDDGLEAVIFTAQGDMRQALNNLQSTW---SGFGY 251
Query: 252 VN-EDVLEV 259
VN E+V +V
Sbjct: 252 VNSENVFKV 260
>gi|410077369|ref|XP_003956266.1| hypothetical protein KAFR_0C01380 [Kazachstania africana CBS 2517]
gi|372462850|emb|CCF57131.1| hypothetical protein KAFR_0C01380 [Kazachstania africana CBS 2517]
Length = 321
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 103/236 (43%), Positives = 142/236 (60%), Gaps = 9/236 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+ + D++ +E + LK+ ++PH + G PG GKT+++ H+L G
Sbjct: 10 LPWVEKYRPQLLKDIVGNEETIERLKQIAQDGNMPHMIISGLPGIGKTTSVHCLAHELLG 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y + +LELNASDDRGI VIR+++K FAQ+ + P KI+ILDEADSMT
Sbjct: 70 SHYSQAVLELNASDDRGIDVIRNQIKHFAQKKLN------LPVGKHKIIILDEADSMTAG 123
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME + +TRF CN + II+PL SRC+ R+ L++ +L RL + E E
Sbjct: 124 AQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEVIELE 183
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWI 268
V LE ++ T+ GDMR+AI LQS G G+VN D + P P I
Sbjct: 184 KVEYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNGDNVFKIVDSPHPLI 236
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 65/135 (48%), Gaps = 8/135 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK--LLKVDSF 378
LE ++ T+ GDMR+AI LQS G G+VN D + P+P I + LL
Sbjct: 191 GLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNGDNVFKIVDSPHPLIVRKMLLSTTLD 247
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
+ + +L + YS+ + + + + + ++ +++++ + R+ +G Y
Sbjct: 248 ESMNILRNELWNKGYSSVDIVTTCFRVTKTLPQVKEAKRLEMIKEIGFTHMRILEGVGTY 307
Query: 439 IQILDLGSIVIKANK 453
+Q L S++ K +K
Sbjct: 308 LQ---LASMLAKIHK 319
>gi|149238019|ref|XP_001524886.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146451483|gb|EDK45739.1| activator 1 40 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 377
Score = 201 bits (512), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 104/256 (40%), Positives = 158/256 (61%), Gaps = 11/256 (4%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY 95
VEKYRP+ +++V Q ++V+ +++ + LPH LFYGPPGTGKTST++A +++G Y
Sbjct: 55 VEKYRPENLEEVYGQGDIVNTVRRFVETGKLPHLLFYGPPGTGKTSTIVALAREIYGPNY 114
Query: 96 RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
+ +LELNASDDRGI V+R+++K+FA T F P FK++ILDEAD+MT AQ
Sbjct: 115 KNMVLELNASDDRGIDVVRNQIKSFA-STRQIFTSASS--PQFKLIILDEADAMTSVAQN 171
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
+LRR +EK TK+ RFC++ NY + L SRC++FRF P+ E + +R+ + +E V
Sbjct: 172 SLRRIIEKFTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEEAIRSRINNVIIKEKVD 231
Query: 216 CDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW-----IEK 270
AL L+ S GDMRR++ LQ+C + ++ D++ P P ++
Sbjct: 232 ITPDALNALLHLSQGDMRRSLNVLQACKAAVNDDETIDIDMIYNCVGAPHPQDIEACLDS 291
Query: 271 LLKVD---SFQVLEKY 283
+LK D ++ L KY
Sbjct: 292 ILKDDWTTAYLTLTKY 307
>gi|440797689|gb|ELR18770.1| DNA replication factor C complex subunit 2, putative [Acanthamoeba
castellanii str. Neff]
Length = 346
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 114/244 (46%), Positives = 153/244 (62%), Gaps = 15/244 (6%)
Query: 22 VSTSGK----TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
V TSG T + VPWVEKYRPK I D++ E VS L+ S ++P+ + GPPGT
Sbjct: 7 VQTSGGEKRGTEDLEVPWVEKYRPKDIKDIVGNVETVSRLQIIASEGNMPNLILAGPPGT 66
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKT++++ H L G YRE +LELNASDDRGI V+R+K+K FAQ+ + G+
Sbjct: 67 GKTTSILCLAHALLGPNYREGVLELNASDDRGIDVVRNKIKMFAQKKVN--LAPGRQ--- 121
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
K+VILDEADSMT AAQ ALRRTME + +TRF L CN S II+P+ SRC+ R+ L
Sbjct: 122 -KVVILDEADSMTSAAQQALRRTMEIYSNTTRFALACNVSSKIIEPIQSRCAILRYTRLG 180
Query: 198 ENTMLTRLQYICEQE-SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-ED 255
+ +L RL + + E ++ LE ++ T+ GDMR+A+ LQS G G VN E+
Sbjct: 181 DEQVLKRLMEVIKAEGNIPHTDDGLEAVLFTAEGDMRQALNNLQST---HAGYGFVNREN 237
Query: 256 VLEV 259
V +V
Sbjct: 238 VFKV 241
>gi|170290625|ref|YP_001737441.1| DNA replication ATPase HolB small subunit [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170174705|gb|ACB07758.1| ATPase involved in DNA replication HolB, small subunit [Candidatus
Korarchaeum cryptofilum OPF8]
Length = 331
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 113/291 (38%), Positives = 162/291 (55%), Gaps = 15/291 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-- 92
WVEKYRPKT+DDV+ Q +++ LK + +PH LF GP GTGKT+T +A + L+
Sbjct: 6 WVEKYRPKTLDDVVGQDDIIRALKGFVEKRSMPHLLFAGPAGTGKTTTALALANDLYKSE 65
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ LELNASD+RGI IR K+K FA+ G PFKI+ LDEAD++T
Sbjct: 66 ELVAANYLELNASDERGIDTIRTKIKDFAKTAPFG-------EVPFKIIHLDEADNLTAD 118
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR ME + +TRF CNY S II+P+ SRC+ FRF P+ E + RL I E+E
Sbjct: 119 AQQALRRIMEMYSATTRFIFACNYSSKIIEPIQSRCAVFRFGPIPEEAIKNRLIMIAERE 178
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP----KPWI 268
+ + ++ + GD+R+AI LQ+ + + + ++ V V G+ + I
Sbjct: 179 GLKYTEDGISAIIYVAEGDLRKAINLLQTASAM--ASTVDSKVVYRVAGLAHPEEVRAMI 236
Query: 269 EKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALF 319
LK E +I SA + Q + +M + SLSDK+KA+
Sbjct: 237 NSALKGKFLSAREALRNLMINYGMSAQDVIRQLNREIMASKSLSDKEKAML 287
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 8/126 (6%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----WIEKLLKV 375
+ ++ + GD+R+AI LQ+ + + V+ V+ + +P I LK
Sbjct: 186 GISAIIYVAEGDLRKAINLLQTASAMAS---TVDSKVVYRVAGLAHPEEVRAMINSALKG 242
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
E +I SA + Q + +M++ SLSDK+KA+++ L+E + R+ +GA
Sbjct: 243 KFLSAREALRNLMINYGMSAQDVIRQLNREIMASKSLSDKEKAMLMIFLSEVDFRVTEGA 302
Query: 436 SEYIQI 441
+Q+
Sbjct: 303 HGDVQL 308
>gi|448712798|ref|ZP_21701827.1| replication factor C small subunit [Halobiforma nitratireducens JCM
10879]
gi|445790224|gb|EMA40893.1| replication factor C small subunit [Halobiforma nitratireducens JCM
10879]
Length = 335
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 166/289 (57%), Gaps = 14/289 (4%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
S+ + T K W+EKYRP+ +DD+ + +V L + + DLPH +F GP GT
Sbjct: 2 SEADAEAAEPTPGKTEVWIEKYRPERLDDIKGHENIVPRLTRYVEQDDLPHLMFAGPAGT 61
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKT+ A +++ D ++E LELNASD RGI V+RD++K FA+ + G++
Sbjct: 62 GKTTAAQAIAREVYEDDWQENFLELNASDQRGIDVVRDRIKDFARSSFGGYDH------- 114
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L
Sbjct: 115 -RIIFLDEADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELT 173
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
++ + +++ I +E + ++ LV + GDMR+ I LQ+ A + GE + + V
Sbjct: 174 DDAIEAQVREIATEEGIELTDDGVDALVYAADGDMRKGINGLQAAAVM--GETVDEDTVF 231
Query: 258 EVTGVIPKPWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFH 302
+T +E+++ +D F +EDL+++ + + DQ H
Sbjct: 232 AITSTARPEEVEEMVDHAIDGDFTAARAALEDLLMDRGLAGGDVIDQLH 280
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 65/127 (51%), Gaps = 11/127 (8%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDS- 377
++ LV + GDMR+ I LQ+ A + GE + + V +T +E+++ +D
Sbjct: 196 GVDALVYAADGDMRKGINGLQAAAVM--GETVDEDTVFAITSTARPEEVEEMVDHAIDGD 253
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALI--LEKLAECNARLQDG 434
F +EDL+++ + + DQ H SA ++A + LE+L E + R+ +G
Sbjct: 254 FTAARAALEDLLMDRGLAGGDVIDQLH---RSAWEFDIPEQATVRLLERLGEVDYRITEG 310
Query: 435 ASEYIQI 441
A+E +Q+
Sbjct: 311 ANERLQL 317
>gi|242074030|ref|XP_002446951.1| hypothetical protein SORBIDRAFT_06g025740 [Sorghum bicolor]
gi|241938134|gb|EES11279.1| hypothetical protein SORBIDRAFT_06g025740 [Sorghum bicolor]
Length = 333
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 104/227 (45%), Positives = 145/227 (63%), Gaps = 8/227 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP + DV+ + V+ L+ ++P+ + GPPGTGKT++++A H+L G
Sbjct: 15 IPWVEKYRPNRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 74
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YRE +LELNASDDRG+ V+R+K+K FAQ+ + Q G+ KIVILDEADSMT
Sbjct: 75 PSYREAVLELNASDDRGLDVVRNKIKMFAQKKVTL--QPGR----HKIVILDEADSMTTG 128
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME + +TRF L CN S II+P+ SRC+ RF L++ +L RL + E
Sbjct: 129 AQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAE 188
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 259
V + LE ++ T+ GDMR+A+ LQ A G + E+V +V
Sbjct: 189 KVPYVPEGLEAIIFTADGDMRQALNNLQ--ATFSGFRFVNQENVFKV 233
>gi|23271821|gb|AAH23674.1| Rfc5 protein, partial [Mus musculus]
Length = 333
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 106/222 (47%), Positives = 145/222 (65%), Gaps = 10/222 (4%)
Query: 41 PKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERI 99
P+T+ D+I Q+++S ++K +S LPH L YGPPGTGKTST++A QL+ D + +
Sbjct: 21 PQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMV 80
Query: 100 LELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRR 159
LELNASDDRGI ++R + +FA T + F + FK+VILDEAD+MT AQ ALRR
Sbjct: 81 LELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEADAMTQDAQNALRR 133
Query: 160 TMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFK 219
+EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+++ ++E+V
Sbjct: 134 VIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISED 193
Query: 220 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 194 GMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG 233
>gi|68490447|ref|XP_710951.1| hypothetical protein CaO19.3211 [Candida albicans SC5314]
gi|46432214|gb|EAK91709.1| hypothetical protein CaO19.3211 [Candida albicans SC5314]
gi|238882781|gb|EEQ46419.1| activator 1 40 kDa subunit [Candida albicans WO-1]
Length = 361
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 105/225 (46%), Positives = 146/225 (64%), Gaps = 19/225 (8%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM- 94
VEKYRP ++++V QQE+V ++K + LPH LFYGP GTGKTST+IA +++G
Sbjct: 26 VEKYRPDSLEEVKGQQEIVDTVRKFVETGKLPHLLFYGPSGTGKTSTIIALAKEIYGATN 85
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQ----------QTASGFNQDGKPCPPFKIVILD 144
Y+ ILELNASDDRGI V+R+++K FA QTAS NQ FK++ILD
Sbjct: 86 YKNMILELNASDDRGIDVVRNQIKNFASTRQIFTKNTSQTASN-NQ-------FKLIILD 137
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EAD+MT+ AQ +LRR +EK TK+ RFC++ NY + L SRC++FRF P+ + + R
Sbjct: 138 EADAMTNVAQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDISAIKDR 197
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249
L + +E+V +A++ L++ S GDMRRA+ LQSC G E
Sbjct: 198 LNTVIIKENVNISPEAIDALLKLSNGDMRRALNVLQSCKAALGDE 242
>gi|403163867|ref|XP_003323926.2| replication factor C subunit 4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375164648|gb|EFP79507.2| replication factor C subunit 4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 342
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 176/327 (53%), Gaps = 24/327 (7%)
Query: 16 SSSKTSVSTSG--KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
SSSK + +T K VPWVEKYRP +DD+ + + LK + PH + G
Sbjct: 2 SSSKMNATTVDILKASGAEVPWVEKYRPIILDDITGNTDTIERLKVIARDGNCPHIIISG 61
Query: 74 PPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133
PG GKT++++ H L GD Y+E +LELNASD+RGI V+R+K+KTFA +
Sbjct: 62 APGIGKTTSILCLAHALLGDAYKEGVLELNASDERGIDVVRNKIKTFANTKVT------L 115
Query: 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
P KI+ILDEADSMT AQ ALRRTME + +TRF L CN S II+P+ SRC+ R+
Sbjct: 116 PAGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNNSSKIIEPIQSRCAILRY 175
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253
L + +L RL I E+V L L+ TS GDMR+AI LQS G G V+
Sbjct: 176 GKLKDQEVLKRLVEIATAENVKYAEDGLAALIFTSEGDMRQAINNLQSTV---SGFGFVS 232
Query: 254 -EDVLEVTGVIPKP-WIEKLL----KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVML 307
E V +V P P I+KLL K D L++ +E L + YSA + +V
Sbjct: 233 AESVFKVCDQ-PHPVVIQKLLSACEKGDLSDALDQ-LEHLWEQGYSALDIVGTLLKVVKS 290
Query: 308 ASSLSDKQKALFKALETLVETSGGDMR 334
+S+ F LE + E MR
Sbjct: 291 MDRMSE-----FLKLEFIKEIGFTHMR 312
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 11/127 (8%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPNP-WIEKLL----K 374
L L+ TS GDMR+AI LQS G G V+ E V +V P+P I+KLL K
Sbjct: 202 GLAALIFTSEGDMRQAINNLQSTV---SGFGFVSAESVFKVCDQ-PHPVVIQKLLSACEK 257
Query: 375 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
D L++ +E L + YSA + +V S +S+ K ++++ + R+ +G
Sbjct: 258 GDLSDALDQ-LEHLWEQGYSALDIVGTLLKVVKSMDRMSEFLKLEFIKEIGFTHMRILEG 316
Query: 435 ASEYIQI 441
S +Q+
Sbjct: 317 VSTLVQL 323
>gi|50290299|ref|XP_447581.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526891|emb|CAG60518.1| unnamed protein product [Candida glabrata]
Length = 322
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 112/272 (41%), Positives = 164/272 (60%), Gaps = 21/272 (7%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP + D++ +E V L++ + ++PH + G PG GKT+++ H++ G
Sbjct: 10 LPWVEKYRPHLLKDIVGNEETVERLQQIAADGNMPHMIISGLPGIGKTTSIHCLAHEMLG 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC--PP--FKIVILDEADS 148
+ Y + +LELNASDDRGI V+R+++K FAQ K C PP KI+ILDEADS
Sbjct: 70 ESYSQAVLELNASDDRGIDVVRNQIKHFAQ----------KKCHLPPGKHKIIILDEADS 119
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRRTME + STRF CN + II+PL SRC+ R+ L++ +L RL I
Sbjct: 120 MTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEI 179
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPKPW 267
+ E V LE ++ T+ GDMR+AI LQS G G+VN E+V ++ P P
Sbjct: 180 IKAEDVQYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNGENVFKIVDS-PHPL 235
Query: 268 I-EKLLKVDSF-QVLEKYIEDLILEAYSATQL 297
I +K+L ++ + ++ ++L + YSA +
Sbjct: 236 IVKKMLLAETLDESIDCLRQELWAKGYSAVDI 267
Score = 45.8 bits (107), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 73/136 (53%), Gaps = 10/136 (7%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPNPWI-EKLLKVDSF 378
LE ++ T+ GDMR+AI LQS G G+VN E+V ++ P+P I +K+L ++
Sbjct: 191 GLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNGENVFKIVDS-PHPLIVKKMLLAETL 246
Query: 379 -QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 437
+ ++ ++L + YSA + + + L + + +++++ + R+ +G S
Sbjct: 247 DESIDCLRQELWAKGYSAVDIVTTCFRVTKNLFQLKESVRLEMIKEIGTTHMRILEGVST 306
Query: 438 YIQILDLGSIVIKANK 453
Y+Q L S++ K +K
Sbjct: 307 YLQ---LASMLAKIHK 319
>gi|424513766|emb|CCO66388.1| replication factor C subunit 2 [Bathycoccus prasinos]
Length = 373
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 104/253 (41%), Positives = 154/253 (60%), Gaps = 11/253 (4%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
+S K + +T N+P W+EK+RP +DD++ +E ++ ++ + +P+ L GPP
Sbjct: 9 ASEKQKETREQETANQP--WIEKWRPTKLDDIVGHEETLNQMRGMIETGSMPNLLLSGPP 66
Query: 76 GTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
G GKT+++ L GD Y++ +LELNASD+RGI V+R+K+K FAQ+ + P
Sbjct: 67 GCGKTTSVHVLARTLLGDRYKDAVLELNASDERGIDVVRNKIKMFAQKKVT------LPA 120
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
KI+ILDEAD+MT AQ A+RRTME + +TRF L CN II+P+ SRC+ RF
Sbjct: 121 GRCKIIILDEADAMTKGAQQAMRRTMEIYSATTRFALACNLSDKIIEPIQSRCAIVRFSR 180
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255
L++ +L RL Y+CEQE V D + LE +V + GDMR A+ LQ+C G + + E+
Sbjct: 181 LSDKQVLERLVYVCEQEKVPHDARGLEAIVFCAEGDMRNALNSLQACH--SGFQMVNQEN 238
Query: 256 VLEVTGVIPKPWI 268
V V P P +
Sbjct: 239 VFRVCDT-PHPEV 250
>gi|154322657|ref|XP_001560643.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
gi|347837173|emb|CCD51745.1| similar to replication factor C subunit [Botryotinia fuckeliana]
Length = 355
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 128/345 (37%), Positives = 191/345 (55%), Gaps = 38/345 (11%)
Query: 9 KLGKDAPSSSKTSV--STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADL 66
++G+ + S++K ++ +T+G T N +PWVEKYRP +DDV+ E + LK ++
Sbjct: 8 EVGESSTSAAKKALKANTNGVT-NYELPWVEKYRPVFLDDVVGNTETIERLKIIAKDGNM 66
Query: 67 PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTAS 126
PH + G PG GKT++++ QL GD Y+E +LELNASD+RGI V+R+++K FAQ+ +
Sbjct: 67 PHVIISGMPGIGKTTSVLCLARQLLGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVT 126
Query: 127 GFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186
P K+VILDEADSMT AQ ALRRTME + +TRF CN + II+PL S
Sbjct: 127 ------LPAGRHKLVILDEADSMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQS 180
Query: 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246
RC+ R+ L + ++ RL I E E V L LV ++ GDMR+AI LQS
Sbjct: 181 RCAILRYARLTDQQVVKRLLQIIETEKVEYSDDGLAALVFSAEGDMRQAINNLQSTF--- 237
Query: 247 GGEGIVNEDVLEVTGVIPKPW---IEKLL------KVDSFQVLEKYIEDLILEAYSATQL 297
G G+VN D V V+ P ++ ++ K+DS LE + +L YS+ +
Sbjct: 238 AGFGLVNGD--NVFKVVDSPHPIKVQAMIKACYEGKIDS--ALET-LNELWGLGYSSHDI 292
Query: 298 FDQFHDIVMLASSLSDKQKALF------------KALETLVETSG 330
+ ++LS+ K F + ++TL++ SG
Sbjct: 293 ISTMFRVTKTVNTLSEHSKLEFIKEIGFTHMKILEGVQTLLQLSG 337
>gi|19114033|ref|NP_593121.1| DNA replication factor C complex subunit Rfc4 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|30913230|sp|O94449.1|RFC4_SCHPO RecName: Full=Replication factor C subunit 4; Short=Replication
factor C4
gi|4106657|emb|CAA22597.1| DNA replication factor C complex subunit Rfc4 (predicted)
[Schizosaccharomyces pombe]
Length = 342
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 108/249 (43%), Positives = 148/249 (59%), Gaps = 17/249 (6%)
Query: 17 SSKTSVSTSGKTRNK---PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
S+ S S G+ N +PWVEKYRP +DD++ +E + LK ++PH + G
Sbjct: 2 SNAVSSSVFGEKNNSVAYELPWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISG 61
Query: 74 PPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133
PG GKT++++ H L G Y+E +LELNASD+RGI V+R+++K FAQ+
Sbjct: 62 MPGIGKTTSILCLAHALLGPAYKEGVLELNASDERGIDVVRNRIKAFAQKKVI------- 114
Query: 134 PCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
PP KI+ILDEADSMT AQ ALRRTME + +TRF L CN + II+P+ SRC+
Sbjct: 115 -LPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAIL 173
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
R+ L + +L RL IC+ E V L L+ T+ GDMR+A+ LQS G G+
Sbjct: 174 RYSRLTDQQVLQRLLNICKAEKVNYTDDGLAALIMTAEGDMRQAVNNLQSTV---AGFGL 230
Query: 252 VN-EDVLEV 259
VN E+V V
Sbjct: 231 VNGENVFRV 239
>gi|115459988|ref|NP_001053594.1| Os04g0569000 [Oryza sativa Japonica Group]
gi|38344372|emb|CAE02250.2| OSJNBb0032E06.6 [Oryza sativa Japonica Group]
gi|113565165|dbj|BAF15508.1| Os04g0569000 [Oryza sativa Japonica Group]
Length = 335
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 130/328 (39%), Positives = 186/328 (56%), Gaps = 28/328 (8%)
Query: 13 DAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFY 72
DA SSS ++ + +PWVEKYRP + DV + V+ L+ ++P+ +
Sbjct: 2 DASSSSAPDLADA-----YDIPWVEKYRPTRVADVGGNSDAVARLQDIARDGNMPNLILS 56
Query: 73 GPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
GPPGTGKT+++++ H+L G YRE +LELNASDDRG+ V+R+K+K FAQ+ + Q G
Sbjct: 57 GPPGTGKTTSILSLAHELLGPSYREAVLELNASDDRGLDVVRNKIKMFAQKKVT--LQPG 114
Query: 133 KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
+ KIVILDEADSMT AQ ALRRTME + +TRF L CN S II+P+ SRC+ R
Sbjct: 115 R----HKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVR 170
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
F L++ +L RL + E V + LE ++ T+ GDMR+A+ LQ A + G +
Sbjct: 171 FSRLSDQEILGRLMIVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQ--ATVSGFRFVN 228
Query: 253 NEDVLEVTGVIPKPW-IEKLLKVDSFQVLEKYIEDLILEAYSA-TQLFDQFHD----IVM 306
E+V +V P P ++ ++K VL+ + EA SA QL+D + I
Sbjct: 229 QENVFKVCDQ-PHPLHVKNMVK----NVLDGKFD----EACSALKQLYDLGYSPTDIITT 279
Query: 307 LASSLSDKQKALFKALETLVETSGGDMR 334
L + + A + LE L ET MR
Sbjct: 280 LFRVIKNYDMAEYLKLELLKETGFAHMR 307
>gi|392575134|gb|EIW68268.1| hypothetical protein TREMEDRAFT_44679 [Tremella mesenterica DSM
1558]
Length = 346
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 107/247 (43%), Positives = 148/247 (59%), Gaps = 17/247 (6%)
Query: 11 GKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFL 70
GKD S+ + G +PWVEKYRP +DD++ + V LK ++PH +
Sbjct: 7 GKDNISAIAKHIDAEGYE----MPWVEKYRPVLLDDIVGNTDTVERLKVIAEDGNVPHII 62
Query: 71 FYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ 130
G PG GKT+++ H L G+ Y+E +LELNASD+RGI V+R+K+K+FAQ+ +
Sbjct: 63 ISGMPGIGKTTSIHCLAHALLGESYKEGVLELNASDERGIDVVRNKIKSFAQRKVT---- 118
Query: 131 DGKPCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRC 188
PP KI+ILDEADSMT AQ ALRRTME + +TRF L CN + II+P+ SRC
Sbjct: 119 ----LPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRC 174
Query: 189 SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG 248
+ R+ L + +L RL+ +CE E V + L L+ T+ GDMR+AI LQS G
Sbjct: 175 AILRYSKLKDAEVLKRLKELCEMEDVKHNDAGLSALIFTAEGDMRQAINNLQST---HSG 231
Query: 249 EGIVNED 255
G V++D
Sbjct: 232 FGFVSQD 238
>gi|398390788|ref|XP_003848854.1| replication factor C subunit 4 [Zymoseptoria tritici IPO323]
gi|339468730|gb|EGP83830.1| hypothetical protein MYCGRDRAFT_76271 [Zymoseptoria tritici IPO323]
Length = 351
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 107/244 (43%), Positives = 145/244 (59%), Gaps = 10/244 (4%)
Query: 12 KDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLF 71
KDA ++ +T G N +PWVEKYRP +DD++ E + LK ++PH +
Sbjct: 8 KDAETNG-VKANTRGAPANYELPWVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVII 66
Query: 72 YGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131
G PG GKT++++ QL GD Y+E +LELNASD+RGI V+R+++K FAQ+ +
Sbjct: 67 SGMPGIGKTTSVLCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVT----- 121
Query: 132 GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
P KIVILDEADSMT AQ ALRRTME + +TRF CN + II+PL SRC+
Sbjct: 122 -LPAGRQKIVILDEADSMTSGAQQALRRTMEIYSGTTRFAFACNQSNKIIEPLQSRCAIL 180
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
R+ L + ++ RL IC+ E V + LV ++ GDMR+AI LQS G G
Sbjct: 181 RYARLTDGQVVKRLYQICQAEKVEYSDDGIAALVFSAEGDMRQAINNLQST---HAGFGF 237
Query: 252 VNED 255
VN D
Sbjct: 238 VNGD 241
>gi|451994907|gb|EMD87376.1| hypothetical protein COCHEDRAFT_1144919 [Cochliobolus
heterostrophus C5]
Length = 353
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 120/298 (40%), Positives = 164/298 (55%), Gaps = 20/298 (6%)
Query: 12 KDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLF 71
K A S++ + N +PWVEKYRP +DDV+ E + LK ++PH +
Sbjct: 8 KAAASNTVKPNPNAAGGANYELPWVEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMII 67
Query: 72 YGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131
G PG GKT++++ HQL GD Y+E +LELNASD+RGI V+R+++K FAQ+ +
Sbjct: 68 SGMPGIGKTTSILCLAHQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVT----- 122
Query: 132 GKPCPPF--KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189
PP K+VILDEADSMT AQ ALRRTME + +TRF CN + II+PL SRC+
Sbjct: 123 ---LPPGRQKLVILDEADSMTSGAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCA 179
Query: 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249
R+ L + ++ R+ ICE E V + LV ++ GDMR+AI LQS G
Sbjct: 180 ILRYARLTDAQVVRRIMQICEAEDVKYSDDGIAALVFSAEGDMRQAINNLQSTF---AGF 236
Query: 250 GIVNEDVLEVTGVIPKPWIEKLLKVDSF--QVLEKYIEDLILEAYSATQLFDQFHDIV 305
G VN D V V+ P +KV S E+ I+D + L HDI+
Sbjct: 237 GFVNGD--NVFKVVDSP---HPIKVQSMIKACHEQRIDDALAALKELWDLGYSCHDII 289
>gi|45357990|ref|NP_987547.1| replication factor C small subunit [Methanococcus maripaludis S2]
gi|50400879|sp|Q6M044.1|RFCS_METMP RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|44920747|emb|CAF29983.1| Replication factor C, small subunit [Methanococcus maripaludis S2]
Length = 315
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 132/210 (62%), Gaps = 7/210 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+ +V+ E++ L + +PH LF G PG GKT+ +A L+GD
Sbjct: 4 PWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGD 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+RE LELN+SD+RGI VIR KVK FA+ G PFK++ LDE+D++T A
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG-------DAPFKVIFLDESDALTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTMEK + RF L CNY S II P+ SRC+ FRF PL ++ L+ I E+E+
Sbjct: 117 QNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKEN 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCA 243
+ + ++ ++ S GDMR+AI LQ+ A
Sbjct: 177 LNLEKGGIDAIIYVSEGDMRKAINVLQTAA 206
Score = 40.4 bits (93), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 73/155 (47%), Gaps = 27/155 (17%)
Query: 302 HDIVMLASSLSDKQKALFK--ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE 359
D+V +S+K+ + ++ ++ S GDMR+AI LQ+ A + + E+++
Sbjct: 162 EDLVENLKDISEKENLNLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDE---ITEEIVY 218
Query: 360 VTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL------- 412
P +++ K+ + K++E + QL++ D MS +
Sbjct: 219 KVASKARP--DEIKKMTQLALNGKFVE-------AREQLYNLMIDWGMSGEDILIQVFRE 269
Query: 413 ------SDKQKALILEKLAECNARLQDGASEYIQI 441
S+K+K ++E + EC+ R+ +G++E IQ+
Sbjct: 270 VPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQL 304
>gi|323307584|gb|EGA60853.1| Rfc3p [Saccharomyces cerevisiae FostersO]
Length = 201
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 97/207 (46%), Positives = 141/207 (68%), Gaps = 8/207 (3%)
Query: 22 VSTSGKTRNKP-VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKT 80
+STS + R+K +PWVEKYRP+T+D+V Q EV++ ++K + LPH LFYGPPGTGKT
Sbjct: 1 MSTSTEKRSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKT 60
Query: 81 STMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
ST++A +++G Y +LELNASDDRGI V+R+++K FA T F++ FK+
Sbjct: 61 STIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKL 113
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
+ILDEAD+MT+AAQ ALRR +E+ TK+TRFC++ NY + L SRC++FRF+PL +
Sbjct: 114 IILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEA 173
Query: 201 MLTRLQYICEQESVMCDFKALETLVET 227
+ R+ + E + A + L+ T
Sbjct: 174 IERRIANVLVHEKLKLSPNAEKALIGT 200
>gi|302698263|ref|XP_003038810.1| hypothetical protein SCHCODRAFT_84256 [Schizophyllum commune H4-8]
gi|300112507|gb|EFJ03908.1| hypothetical protein SCHCODRAFT_84256 [Schizophyllum commune H4-8]
Length = 340
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 109/242 (45%), Positives = 145/242 (59%), Gaps = 13/242 (5%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
SSS + +T +PWVEKYRP+ +DDV+ + + LK + PH + G P
Sbjct: 2 SSSSKAKATGPADAPYELPWVEKYRPQVLDDVVGNADTIDRLKVIARDGNCPHIIISGMP 61
Query: 76 GTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
G GKT+++ HQL G Y+E +LELNASD+RGI V+R+K+K FAQ+ +
Sbjct: 62 GIGKTTSIHCLAHQLLGPAYKEGVLELNASDERGIDVVRNKIKNFAQKKVT--------L 113
Query: 136 PP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
PP KI+ILDEADSMT AQ ALRRTME + +TRFCL CN + II+P+ SRC+ R+
Sbjct: 114 PPGRHKIIILDEADSMTAGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRY 173
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253
L + +L RL ICE E V + L L+ T+ GDMR+AI LQS G G V+
Sbjct: 174 GKLKDQEILKRLLEICEAEKVEYNDDGLTALIFTAEGDMRQAINNLQSTW---SGFGFVS 230
Query: 254 ED 255
D
Sbjct: 231 GD 232
>gi|219127681|ref|XP_002184059.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404290|gb|EEC44237.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 349
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 139/216 (64%), Gaps = 6/216 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPWVEKYRP+ ++DV+ +E VS L+ +LP+ + GPPGTGKT+++ A QL G
Sbjct: 32 VPWVEKYRPRVLEDVVGNEETVSRLRAISRTGNLPNLILAGPPGTGKTTSVHALARQLLG 91
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y++ +LELNASD RGI V+R+++K+FA N+ P KI+ILDEADSMT A
Sbjct: 92 ASYKDAVLELNASDARGIDVVRNRIKSFA------MNKVTLPPGRHKIIILDEADSMTSA 145
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME + +TRFCL CN + II+ + SR + R+ LA +LT L +C+ E
Sbjct: 146 AQQALRRTMELYSNTTRFCLACNVSTKIIEAIQSRAAILRYSRLANEQVLTCLLKVCQAE 205
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG 248
S+ ALE ++ T+ GDMR A+ LQ+ L G
Sbjct: 206 SISYTNDALEAILFTAEGDMRHALNNLQASYFLTNG 241
>gi|303281602|ref|XP_003060093.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458748|gb|EEH56045.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 332
Score = 201 bits (510), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 97/207 (46%), Positives = 132/207 (63%), Gaps = 7/207 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP + DV ++++ + + LPH L YGPPGTGKTST++A +L+G
Sbjct: 2 WVEKYRPSRLADVAAHKDIIDTIGRLTKEDKLPHLLLYGPPGTGKTSTILAVAKELYGPA 61
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+ + LELNASDDRGI V+R+++++FA + FN G FK++ILDE DSMT AQ
Sbjct: 62 FAQMTLELNASDDRGIDVVRNEIQSFA--STMRFNATG-----FKLIILDECDSMTKDAQ 114
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR +EK TK TRFCLI NYVS II L SRC++FRF PL ++ R++++ E V
Sbjct: 115 FALRRVIEKYTKHTRFCLIGNYVSKIIPALQSRCTRFRFAPLGPESVRERVKHVVASEGV 174
Query: 215 MCDFKALETLVETSGGDMRRAITCLQS 241
+ L + GDMRR + LQ+
Sbjct: 175 EITEEGLAAVQTLGAGDMRRTLNILQA 201
>gi|147918695|ref|YP_687582.1| replication factor C small subunit [Methanocella arvoryzae MRE50]
gi|121687726|sp|Q0W037.1|RFCS_UNCMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|110622978|emb|CAJ38256.1| replication factor C (clamp loader), small subunit [Methanocella
arvoryzae MRE50]
Length = 322
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/276 (39%), Positives = 157/276 (56%), Gaps = 21/276 (7%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP+ ++DVI Q++ L + +LPH LF GPPG GKT+ +A +L+G+
Sbjct: 7 WTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARELYGET 66
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+ +ELNASD+RGI V+R+ +K FA+ G + FKI+ LDEAD++T AQ
Sbjct: 67 WHSNFIELNASDERGIDVVRNNIKNFARTAPLGEAK-------FKIIFLDEADALTSDAQ 119
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + RF + CNY S II+P+ SRC+ +RF PL + T + I + E +
Sbjct: 120 SALRRTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITTGITRIAKNEGL 179
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP-WIEKLLK 273
+ ++ L+ + GDMRRAI LQS A + + DV+ T KP IE +LK
Sbjct: 180 KIEKDGMDALIYVARGDMRRAINALQSAATIAKD---ITADVIYQTTSTAKPKEIEDMLK 236
Query: 274 V-------DSFQVLEKYIEDLILEAYSATQLFDQFH 302
+ DS L+ E LI S T + DQ +
Sbjct: 237 LALNGQFMDSRNKLD---ELLITYGLSGTDIIDQIY 269
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 13/128 (10%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV----- 375
++ L+ + GDMRRAI LQS A + + I + + + T IE +LK+
Sbjct: 185 GMDALIYVARGDMRRAINALQSAATI--AKDITADVIYQTTSTAKPKEIEDMLKLALNGQ 242
Query: 376 --DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQD 433
DS L+ E LI S T + DQ + + D AL+ +++ E + RL +
Sbjct: 243 FMDSRNKLD---ELLITYGLSGTDIIDQIYRSMFELGLDEDVLVALV-DRIGEADFRLTE 298
Query: 434 GASEYIQI 441
GASE IQI
Sbjct: 299 GASERIQI 306
>gi|328772590|gb|EGF82628.1| hypothetical protein BATDEDRAFT_86526 [Batrachochytrium
dendrobatidis JAM81]
Length = 340
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/247 (43%), Positives = 153/247 (61%), Gaps = 15/247 (6%)
Query: 17 SSKTSVSTSGKTRNKP-VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
+S + ST+ P +PW+EKYRP + D++ +E V+ L+ ++P+ + G P
Sbjct: 3 NSLANSSTAQPISESPELPWIEKYRPLVLSDIVGNEETVARLQIIAQEGNMPNIIIAGSP 62
Query: 76 GTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
G GKT++++ H+L G Y+E +LELNASDDRGI+V+R+++K FAQ+ +
Sbjct: 63 GIGKTTSILCLAHELLGSAYKEGVLELNASDDRGIEVVRNRIKMFAQKKVT--------L 114
Query: 136 PP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
PP KIVILDEADSMT AQ ALRRTME + +TRF L CN S II+P+ SRC+ R+
Sbjct: 115 PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNLSSKIIEPIQSRCAILRY 174
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253
L + +L RL ICE E+V + L ++ T+ GDMR+A+ LQS G G VN
Sbjct: 175 TRLTDLQLLRRLLEICEMENVKHTPEGLSAIIFTADGDMRQAVNNLQST---NSGFGFVN 231
Query: 254 -EDVLEV 259
E+V +V
Sbjct: 232 PENVFKV 238
>gi|123505671|ref|XP_001329029.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
gi|121911979|gb|EAY16806.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
Length = 325
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/270 (41%), Positives = 161/270 (59%), Gaps = 18/270 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DDV+ + +S +KK + LPH F+GPPGTGKT+T IA HQL+G
Sbjct: 7 LPWVEKYRPSKLDDVVSHEACISTIKKFIDKNCLPHLCFHGPPGTGKTTTAIAISHQLYG 66
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ +LELNASD+RGI +R ++K FA + S F P K++ILDE+D+MT A
Sbjct: 67 NDTSMSVLELNASDERGIDTVRMRIKDFA-SSRSLFG------PKIKLIILDESDAMTGA 119
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQAALRR ME+ T + RF LICNY +I L SRC++FRF+PL + L++I + E
Sbjct: 120 AQAALRRIMEQFTSNVRFILICNYPEKLIPALRSRCTEFRFQPLPDEDAAKFLRHIADAE 179
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
+ D L+ L++ GD+RR+I +Q+ + + + I +V +G P P
Sbjct: 180 KLNMDEGGLKALLKLGIGDLRRSINLMQTTS-MSNTKDITEANVYRCSGY-PLPE----- 232
Query: 273 KVDSFQVLEKYIEDLILEAYSA--TQLFDQ 300
D + LE+ I + EA + Q+F+
Sbjct: 233 --DMARTLEQLINKPLDEALNTLNDQVFNN 260
>gi|371943672|gb|AEX61500.1| putative replication factor C small subunit [Megavirus courdo7]
gi|425701258|gb|AFX92420.1| putative replication factor C small subunit [Megavirus courdo11]
Length = 344
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/298 (39%), Positives = 166/298 (55%), Gaps = 14/298 (4%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
+ K +PW+EKYRPK ++ +I +E+ LK + LPH LF+GP G+GKTST I C
Sbjct: 13 KKKNLPWIEKYRPKDMNHIISHEEITLALKSFIETKSLPHLLFFGPSGSGKTST-IKCCA 71
Query: 89 QLFGDMYRE-RILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
D Y + ILELNAS++RGI+ +R K+K F + F + FK+VILDE D
Sbjct: 72 SKLYDKYTDCMILELNASNERGIETVRTKIKNFVSSKNTIF-LPMELRNIFKLVILDEID 130
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
SMT AQ LR+T+EK +K+TRFCLICN + I L SRCS FRF PL +N M RL+
Sbjct: 131 SMTVEAQGMLRQTIEKNSKTTRFCLICNDIDKINLALQSRCSLFRFSPLGDNDMYKRLKD 190
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW 267
IC+ E+V +E ++ S GDMR AI LQ L + I DV +++G
Sbjct: 191 ICKIENVKYTKGVIEAIINISKGDMRSAINTLQH-VNLTVNDMITVNDVYKISGHCMPER 249
Query: 268 IEKLLKV---------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
I ++ K+ + + +EK ++ + L + +IVM S L+ QK
Sbjct: 250 ILEIFKISMNLSKKQNNLYDFVEKITNIVVENNITIFNLLAELKNIVM-ESKLTINQK 306
>gi|367013632|ref|XP_003681316.1| hypothetical protein TDEL_0D05210 [Torulaspora delbrueckii]
gi|359748976|emb|CCE92105.1| hypothetical protein TDEL_0D05210 [Torulaspora delbrueckii]
Length = 322
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/271 (41%), Positives = 161/271 (59%), Gaps = 19/271 (7%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+ + D++ +E V L++ ++PH + G PG GKT+++ H+L G
Sbjct: 11 LPWVEKYRPEKLKDIVGNEETVERLEQIAKDGNMPHMIISGLPGIGKTTSVHCLAHELLG 70
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC--PP--FKIVILDEADS 148
Y + +LELNASDDRGI V+R+++K FAQ K C PP KI+ILDEADS
Sbjct: 71 KSYSQAVLELNASDDRGIDVVRNQIKHFAQ----------KKCHLPPGKHKIIILDEADS 120
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRRTME + +TRF CN + II+PL SRC+ R+ L++ +L RL I
Sbjct: 121 MTAGAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLMEI 180
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWI 268
+ E+V LE ++ T+ GDMR+AI LQS G G+V+ D + P P I
Sbjct: 181 IKAENVSFTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHGLVSGDNVFKIVDSPHPLI 237
Query: 269 -EKLLKVDSFQVLEKYIE-DLILEAYSATQL 297
+K+L D+ + +++ DL + YSA +
Sbjct: 238 VKKMLLADTLEESISHLKNDLWDKGYSAVDI 268
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 5/126 (3%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWI-EKLLKVDSFQ 379
LE ++ T+ GDMR+AI LQS G G+V+ D + P+P I +K+L D+ +
Sbjct: 192 GLEAIIFTAEGDMRQAINNLQSTV---AGHGLVSGDNVFKIVDSPHPLIVKKMLLADTLE 248
Query: 380 VLEKYIE-DLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
+++ DL + YSA + + S + + Q+ +++++ + R+ +G Y
Sbjct: 249 ESISHLKNDLWDKGYSAVDIVTTSFRVTKSLYQVKEAQRLEMIKEIGITHMRILEGVGTY 308
Query: 439 IQILDL 444
+Q+ L
Sbjct: 309 LQLASL 314
>gi|363540633|ref|YP_004894429.1| mg378 gene product [Megavirus chiliensis]
gi|448825330|ref|YP_007418261.1| putative replication factor C small subunit [Megavirus lba]
gi|350611798|gb|AEQ33242.1| putative replication factor C small subunit [Megavirus chiliensis]
gi|444236515|gb|AGD92285.1| putative replication factor C small subunit [Megavirus lba]
Length = 344
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/298 (39%), Positives = 166/298 (55%), Gaps = 14/298 (4%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
+ K +PW+EKYRPK ++ +I +E+ LK + LPH LF+GP G+GKTST I C
Sbjct: 13 KKKNLPWIEKYRPKDMNHIISHEEITLALKSFIETKSLPHLLFFGPSGSGKTST-IKCCA 71
Query: 89 QLFGDMYRE-RILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
D Y + ILELNAS++RGI+ +R K+K F + F + FK+VILDE D
Sbjct: 72 SKLYDKYTDCMILELNASNERGIETVRTKIKNFVSSKNTIF-LPMELRNIFKLVILDEID 130
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
SMT AQ LR+T+EK +K+TRFCLICN + I L SRCS FRF PL +N M RL+
Sbjct: 131 SMTVEAQGMLRQTIEKNSKTTRFCLICNDIDKINLALQSRCSLFRFSPLGDNDMYKRLKD 190
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW 267
IC+ E+V +E ++ S GDMR AI LQ L + I DV +++G
Sbjct: 191 ICKIENVKYTKGVIEAIINISKGDMRSAINTLQH-VNLTVNDMITVNDVYKISGHCMPER 249
Query: 268 IEKLLKV---------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
I ++ K+ + + +EK ++ + L + +IVM S L+ QK
Sbjct: 250 ILEIFKISMNLSKKQNNLYDFVEKITNIVVENNITIFNLLAELKNIVM-ESKLTINQK 306
>gi|159904872|ref|YP_001548534.1| replication factor C small subunit [Methanococcus maripaludis C6]
gi|226739142|sp|A9A6K6.1|RFCS_METM6 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|159886365|gb|ABX01302.1| Replication factor C [Methanococcus maripaludis C6]
Length = 315
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 132/210 (62%), Gaps = 7/210 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+ +V+ E++ L + +PH LF G PG GKT+ +A L+GD
Sbjct: 4 PWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGD 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+RE LELN+SD+RGI VIR KVK FA+ G PFK++ LDE+D++T A
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG-------DAPFKVIFLDESDALTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTMEK + RF L CNY S II P+ SRC+ FRF PL ++ L+ I E+E+
Sbjct: 117 QNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKET 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCA 243
+ + ++ ++ S GDMR+AI LQ+ A
Sbjct: 177 LTLEKGGIDAIIYVSEGDMRKAINVLQTAA 206
Score = 41.6 bits (96), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 73/155 (47%), Gaps = 27/155 (17%)
Query: 302 HDIVMLASSLSDKQKALFK--ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE 359
D+V +S+K+ + ++ ++ S GDMR+AI LQ+ A + V E+++
Sbjct: 162 EDLVENLKDISEKETLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSD---TVTEEIVY 218
Query: 360 VTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL------- 412
P +++ K+ + K++E + QL++ D MS +
Sbjct: 219 KVASKARP--DEIKKMTQLALNGKFVE-------AREQLYNLMIDWGMSGEDILIQVFRE 269
Query: 413 ------SDKQKALILEKLAECNARLQDGASEYIQI 441
S+K+K ++E + EC+ R+ +G++E IQ+
Sbjct: 270 VPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQL 304
>gi|363751222|ref|XP_003645828.1| hypothetical protein Ecym_3534 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889462|gb|AET39011.1| Hypothetical protein Ecym_3534 [Eremothecium cymbalariae
DBVPG#7215]
Length = 332
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 110/261 (42%), Positives = 157/261 (60%), Gaps = 18/261 (6%)
Query: 23 STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
+T G N +PW+EKYRP+ +D+V Q VV ++K LPH LFYGPPGTGKTST
Sbjct: 3 NTKGTVEN--LPWIEKYRPERLDEVYGQTRVVETVRKFAQEGRLPHLLFYGPPGTGKTST 60
Query: 83 MIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
+ A +++G YR+ +LELNASDDRGI V+R+++K FA T F++ FK++I
Sbjct: 61 ISALAREIYGKNYRKMVLELNASDDRGIDVVRNQIKEFA-STRQIFSKG------FKLII 113
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT AAQ ALRR +E+ TK+TRFC++ NY + L SRC++FRF+P+ ++
Sbjct: 114 LDEADAMTSAAQNALRRIIERFTKNTRFCILANYAHKLTPALLSRCTRFRFQPVPAQSIE 173
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ-SCARLKGGEG--IVNEDVLEV 259
+ + E + A L+ + GDMR+A+ LQ S A L E + + + E
Sbjct: 174 RCVLNVMAHEHLTLAEDARRALLRLANGDMRKALNVLQASKATLDNPEKDQVTEDTIYEC 233
Query: 260 TGVIPKP-----WIEKLLKVD 275
G P P +E +LK D
Sbjct: 234 IGA-PHPKDIESLMESILKDD 253
>gi|302770687|ref|XP_002968762.1| hypothetical protein SELMODRAFT_90486 [Selaginella moellendorffii]
gi|300163267|gb|EFJ29878.1| hypothetical protein SELMODRAFT_90486 [Selaginella moellendorffii]
Length = 326
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/294 (40%), Positives = 168/294 (57%), Gaps = 24/294 (8%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+ + DV+ Q+ + L+ ++P+ +F GPPG GKT+ ++A H++ G
Sbjct: 9 LPWVEKYRPQKLADVVGNQDAIGRLQVIARDGNMPNLIFSGPPGIGKTTCIMAMAHEMLG 68
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ +E +LELNASDDRGI V+R+K+K FAQ+ + P K+VILDEADSMT
Sbjct: 69 ALAKEAVLELNASDDRGIDVVRNKIKMFAQKKLT------LPRGRHKVVILDEADSMTSG 122
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME + STRF L CN S II+P+ SRC+ RF L+E +L RL + E
Sbjct: 123 AQQALRRTMEIYSSSTRFGLACNLSSQIIEPIQSRCAIVRFTRLSEQDILARLLKVAAAE 182
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
V + LE +V T+ GDMR+A+ LQ A G + + E+V +V P P + +
Sbjct: 183 KVPYVPEGLEAVVFTADGDMRQALNNLQ--ATYSGFQFVNRENVFKVCDQ-PHPLLVSTM 239
Query: 273 KVDSFQVLEKYIEDLILEAY-SATQLFDQFHDIVMLASSLSDKQKALFKALETL 325
++ + I EAY QL+D L S SD LF+ ++
Sbjct: 240 -------IQNTLAGKIDEAYLGMKQLYD-------LGYSASDIITTLFRVVKNF 279
>gi|315044711|ref|XP_003171731.1| replication factor C subunit 4 [Arthroderma gypseum CBS 118893]
gi|311344074|gb|EFR03277.1| replication factor C subunit 4 [Arthroderma gypseum CBS 118893]
Length = 354
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 126/331 (38%), Positives = 176/331 (53%), Gaps = 41/331 (12%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
SG N +PWVEKYRP +DDV+ E + LK ++PH + G PG GKT++++
Sbjct: 20 SGAPVNYELPWVEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSIL 79
Query: 85 AACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVI 142
QL GD Y+E +LELNASD+RGI V+R+++K FAQ+ + PP K+VI
Sbjct: 80 CLARQLLGDTYKEAVLELNASDERGIDVVRNRIKGFAQKKVT--------LPPGRHKLVI 131
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEADSMT AQ ALRRTME + +TRF CN + II+PL SRC+ R+ L + ++
Sbjct: 132 LDEADSMTSGAQQALRRTMEIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVV 191
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED------- 255
RL ICE E V + LV ++ GDMR+AI LQS G G V+ D
Sbjct: 192 KRLMQICEAEKVKYSDDGIAALVFSAEGDMRQAINNLQSTW---AGFGFVSGDNVFRVVD 248
Query: 256 ---VLEVTGVIPKPWIEKL-LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSL 311
++V +I W K+ + +D+ L Y+E YSA + + +L
Sbjct: 249 SPHPVKVQAMIKACWEGKVDIALDTLNELW-YVE----LGYSAHDIISTMFRVTKTIPNL 303
Query: 312 SDKQKALF------------KALETLVETSG 330
S+ K F + L+TLV+ SG
Sbjct: 304 SEHSKLEFIKEIGFTHMRILEGLQTLVQLSG 334
>gi|453087153|gb|EMF15194.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 349
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 145/242 (59%), Gaps = 13/242 (5%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
+S+ + +G N +PWVEKYRP +DD++ E + LK ++PH + G P
Sbjct: 8 ASNGVKANANGTPSNYELPWVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVIISGMP 67
Query: 76 GTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
G GKT++++ QL G+ Y+E +LELNASD+RGI V+R+++K FAQ+ +
Sbjct: 68 GIGKTTSVLCLARQLLGEAYKEAVLELNASDERGIDVVRNRIKGFAQKKVT--------L 119
Query: 136 PPF--KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
PP KIVILDEADSMT AQ ALRRTME + +TRF CN + II+PL SRC+ R+
Sbjct: 120 PPGRQKIVILDEADSMTSGAQQALRRTMEIYSGTTRFAFACNQSNKIIEPLQSRCAILRY 179
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253
L + ++ R+ IC+ E+V L LV ++ GDMR+AI LQS G G VN
Sbjct: 180 ARLTDAQVVKRINQICKAENVQFSDDGLAALVFSAEGDMRQAINNLQST---HAGFGFVN 236
Query: 254 ED 255
D
Sbjct: 237 SD 238
>gi|291333464|gb|ADD93165.1| putative ATPase family associated with various cellular activities
AAA [uncultured archaeon MedDCM-OCT-S05-C724]
Length = 321
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 94/212 (44%), Positives = 139/212 (65%), Gaps = 7/212 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP + +V+ Q+ V + LK + + +PH LF GP G GKT++ +A ++FG++
Sbjct: 5 WIEKYRPNNLSEVVGQEAVTTRLKNYVKESSMPHLLFAGPAGIGKTTSALALAREMFGEL 64
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++ + ELNASD+RGI V+R K+K FA+ G + G FKI+ LDEAD++T AAQ
Sbjct: 65 WQHNLHELNASDERGIDVVRGKIKEFARTAPLG--EKG-----FKIIFLDEADALTGAAQ 117
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTMEK +++ RF + CNY S II P+ SRC+ FRF+P+ + L+++ +E+V
Sbjct: 118 AALRRTMEKYSRTCRFVMSCNYSSKIIDPIQSRCAVFRFRPIKAEDLEKYLKFVASKENV 177
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLK 246
+A E+L + GD+RRAI LQ A K
Sbjct: 178 KVTKEAFESLTYLAQGDLRRAINGLQMAAAAK 209
Score = 42.0 bits (97), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----WIEKLLK 374
+A E+L + GD+RRAI LQ A K V DV+ P +E L
Sbjct: 182 EAFESLTYLAQGDLRRAINGLQMAAAAKTE---VTPDVVYQAVAAARPEEVKDALESALA 238
Query: 375 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
+ EK I + + Q H V + D K L++EK+AE + RL +G
Sbjct: 239 GNFSTAREKLDTLQITYGLAGEDVLRQMHRTVRDLE-IPDNIKVLMIEKMAEADFRLSEG 297
Query: 435 ASEYIQI 441
A+ IQI
Sbjct: 298 ANSRIQI 304
>gi|410730707|ref|XP_003980174.1| hypothetical protein NDAI_0G05150 [Naumovozyma dairenensis CBS 421]
gi|401780351|emb|CCK73498.1| hypothetical protein NDAI_0G05150 [Naumovozyma dairenensis CBS 421]
Length = 321
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 114/271 (42%), Positives = 155/271 (57%), Gaps = 19/271 (7%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP + D++ +E + L++ ++PH + G PG GKT+++ H+L G
Sbjct: 10 LPWVEKYRPHVLKDIVGNEETILRLEQIAQDGNMPHMIISGLPGIGKTTSIHCLAHELLG 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC--PP--FKIVILDEADS 148
D Y +LELNASDDRGI V+R+++K FAQ K C PP KI+ILDEADS
Sbjct: 70 DAYSRAVLELNASDDRGIDVVRNQIKHFAQ----------KKCYLPPGKHKIIILDEADS 119
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRRTME + STRF CN + II+PL SRC+ R+ L++ +L RL I
Sbjct: 120 MTAGAQQALRRTMELFSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEI 179
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWI 268
+ E V LE ++ T+ GDMR+AI LQS G G+VN D + P P I
Sbjct: 180 IKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNGDNVFKIVDSPHPLI 236
Query: 269 EK--LLKVDSFQVLEKYIEDLILEAYSATQL 297
+ LL + L +DL + YSA +
Sbjct: 237 VRRMLLAPTLDEALTYLRDDLWGKGYSAVDI 267
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK--LLKVDSF 378
LE ++ T+ GDMR+AI LQS G G+VN D + P+P I + LL
Sbjct: 191 GLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNGDNVFKIVDSPHPLIVRRMLLAPTLD 247
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
+ L +DL + YSA + + + L + ++ +++++ + R+ +G S Y
Sbjct: 248 EALTYLRDDLWGKGYSAVDIVTTSFRVTKNLFELKENKRLEMIKEIGITHMRILEGVSTY 307
Query: 439 IQI 441
+Q+
Sbjct: 308 LQL 310
>gi|299471716|emb|CBN76937.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 332
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/211 (46%), Positives = 135/211 (63%), Gaps = 10/211 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPWVEKYRP +DDV+ ++ + LK ++P+ + GPPGTGKT+++ A H + G
Sbjct: 10 VPWVEKYRPNKLDDVVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLG 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
D Y +LELNASD RGI+V+R+ +K F Q+ + PP K++ILDEADSMT
Sbjct: 70 DAYANAVLELNASDSRGIEVVRNTIKMFTQKKVT--------LPPGQHKVIILDEADSMT 121
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
+AQ ALRRTME + +TRF L CN + II+P+ SRC+ RF L+E +L RLQ +CE
Sbjct: 122 ASAQQALRRTMEIYSHTTRFALACNVSTKIIEPIQSRCAILRFSRLSEEEILLRLQQVCE 181
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQS 241
E V LE ++ T+ GDMR A+ LQ+
Sbjct: 182 AEQVSYSPDGLEAIIFTAEGDMRNALNNLQA 212
>gi|150403344|ref|YP_001330638.1| replication factor C small subunit [Methanococcus maripaludis C7]
gi|166225156|sp|A6VJ61.1|RFCS_METM7 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|150034374|gb|ABR66487.1| Replication factor C [Methanococcus maripaludis C7]
Length = 315
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 132/210 (62%), Gaps = 7/210 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+ +V+ E++ L + +PH LF G PG GKT+ +A L+G+
Sbjct: 4 PWVEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGE 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+RE LELN+SD+RGI VIR KVK FA+ G PFK++ LDE+D++T A
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG-------DAPFKVIFLDESDALTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTMEK + RF L CNY S II P+ SRC+ FRF PL ++ L+ I E+E+
Sbjct: 117 QNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKEISEKEN 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCA 243
+ + ++ ++ S GDMR+AI LQ+ A
Sbjct: 177 LTLEKGGIDAIIYVSEGDMRKAINVLQTAA 206
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 27/155 (17%)
Query: 302 HDIVMLASSLSDKQKALFK--ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE 359
D+V +S+K+ + ++ ++ S GDMR+AI LQ+ A + V E+++
Sbjct: 162 EDLVENLKEISEKENLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSD---TVTEEIVY 218
Query: 360 VTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL------- 412
P +++ K+ + K++E S QL++ D MS +
Sbjct: 219 KVASKARP--DEIKKMTQLALNGKFVE-------SREQLYNLMIDWGMSGEDILIQIFRE 269
Query: 413 ------SDKQKALILEKLAECNARLQDGASEYIQI 441
S+K+K ++E + EC+ R+ +G++E IQ+
Sbjct: 270 VPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQL 304
>gi|303271997|ref|XP_003055360.1| replication factor c, subunit 2 [Micromonas pusilla CCMP1545]
gi|226463334|gb|EEH60612.1| replication factor c, subunit 2 [Micromonas pusilla CCMP1545]
Length = 335
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 149/238 (62%), Gaps = 14/238 (5%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
+ ++N +PWVEKYRP ID+++ + V L + ++P+ +F GPPG GKT++++
Sbjct: 3 TAASKNSTLPWVEKYRPTKIDEIVGNADAVERLAAMAATGNVPNLIFSGPPGIGKTTSIL 62
Query: 85 AACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVI 142
H L G Y++ +LELNASDDRGI V+R+K+K FAQ+ + PP KIV+
Sbjct: 63 CLAHTLLGPAYKDAVLELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGRHKIVL 114
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEADSMT AAQ A+RRTME + +TRF L CN II+P+ SRC+ RF L++ +L
Sbjct: 115 LDEADSMTSAAQQAMRRTMEIYSNTTRFALACNASEKIIEPIQSRCAIVRFTRLSDQEVL 174
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEV 259
R+ + E+E V LE +V T+ GDMR+A+ LQ+ G G VN E+V +V
Sbjct: 175 ERVMKVVEKEEVPYVPDGLEAVVFTADGDMRQALNNLQAT---HSGFGYVNQENVFKV 229
>gi|17541988|ref|NP_500069.1| Protein RFC-2 [Caenorhabditis elegans]
gi|351021221|emb|CCD63484.1| Protein RFC-2 [Caenorhabditis elegans]
Length = 334
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/292 (39%), Positives = 171/292 (58%), Gaps = 22/292 (7%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPK + D++ + +V LK ++P+ + GPPG GKT+++ A +L GD
Sbjct: 11 PWVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVWALARELLGD 70
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+E +LELNASD+RGI V+R ++KTFAQ + P KI+ILDEADSMT A
Sbjct: 71 KVKEAVLELNASDERGIDVVRHRIKTFAQTKVT------LPEGRHKIIILDEADSMTDGA 124
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTME TK+TRF L CN II+P+ SRC+ R+ L+ +LTR++ + + E
Sbjct: 125 QQALRRTMEMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTRVKEVAKAEK 184
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK 273
V D LE ++ T+ GDMR+A+ LQ A + E + E+VL+V +P + ++K
Sbjct: 185 VNYDDGGLEAILFTAQGDMRQALNNLQ--ATVNAYELVNKENVLKVCD---EPHPDLMIK 239
Query: 274 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETL 325
+ + K+ E A+++ +FH L S D LF+ ++T+
Sbjct: 240 MLHYCTDRKFFE--------ASKIIHEFH---RLGFSSDDIVSTLFRVVKTV 280
>gi|388855091|emb|CCF51222.1| probable RFC4-DNA replication factor C, 37 kDa subunit [Ustilago
hordei]
Length = 343
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 119/294 (40%), Positives = 168/294 (57%), Gaps = 19/294 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DDV+ ++ + LK + + PH L G PG GKT++++ L G
Sbjct: 22 LPWVEKYRPLRLDDVVGNRDTIDRLKVIQNDGNCPHLLISGLPGIGKTTSVLCLARALLG 81
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
D Y+E +LELNASD+RG+ ++R+K+K FAQ+ S PP KIVILDEADSMT
Sbjct: 82 DAYKEGVLELNASDERGVDIVRNKIKNFAQKKVS--------LPPGRHKIVILDEADSMT 133
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AAQ ALRRTME + +TRFC CN + II+P+ SRC+ R+ + + +L RL IC+
Sbjct: 134 PAAQQALRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYAKIRDEQILKRLLEICK 193
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPKPW-I 268
E V + L ++ TS GDMR+AI LQS G G VN E+V +V P P+ I
Sbjct: 194 MEGVEYSDEGLGAIIFTSEGDMRQAINNLQSTYT---GLGFVNPENVFKVCDQ-PHPFLI 249
Query: 269 EKLLKVDSFQVLEKYIEDL---ILEAYSATQLFDQFHDIVMLASSLSDKQKALF 319
LL V+++ +E L + Y+A + +V + + K F
Sbjct: 250 RSLLMACKKGVVDEAMEKLDEIWSKGYAAVDIVTTLFRVVKTLDGVPEATKLEF 303
>gi|448424755|ref|ZP_21582611.1| replication factor C small subunit, partial [Halorubrum terrestre
JCM 10247]
gi|445681965|gb|ELZ34390.1| replication factor C small subunit, partial [Halorubrum terrestre
JCM 10247]
Length = 223
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 135/210 (64%), Gaps = 10/210 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
W+EKYRP+T+DD+ Q+E+V L+ ++ D+PH LF GP G GKT+ A +++G D
Sbjct: 18 WIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGVGKTTAATAIAREIYGED 77
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD RGI V+RD++K FA+ + G F+IV LDE+DS+T A
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG---------DFRIVFLDESDSLTDDA 128
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL++ + ++ I E
Sbjct: 129 QSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAEE 188
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCA 243
+ ++ LV + GDMRRAI LQ+ A
Sbjct: 189 IEVTDAGVDALVYAADGDMRRAINSLQAAA 218
>gi|115655395|ref|XP_790650.2| PREDICTED: replication factor C subunit 2-like [Strongylocentrotus
purpuratus]
Length = 352
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 120/314 (38%), Positives = 181/314 (57%), Gaps = 24/314 (7%)
Query: 13 DAPSSSKTSVST--SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFL 70
D S S SV SGK+ + +PWVEKYRP ++ DV+ +E VS L+ ++P+ +
Sbjct: 11 DLKSKSGESVKAGGSGKSASYEMPWVEKYRPTSLSDVVGNEETVSRLEVFSREGNVPNVI 70
Query: 71 FYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ 130
GPPGTGKT++++ + G +++ +LE+NAS++RGI V+R+K+K FAQ+ +
Sbjct: 71 IAGPPGTGKTTSILCLARTMLGASFKDAVLEMNASNERGIDVVRNKIKMFAQKKVT---- 126
Query: 131 DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190
P KI+ILDEADSMT AAQ A+RRTME +K+TRF L CN II+P+ SRC+
Sbjct: 127 --LPKGRHKIIILDEADSMTGAAQQAMRRTMEVFSKTTRFALACNASDKIIEPIQSRCAV 184
Query: 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG 250
R+ L+++ +L RL IC E+V LE ++ T+ GDMR+AI LQS G
Sbjct: 185 LRYSRLSDSQILKRLLEICAAENVDHAEDGLEAIIYTAQGDMRQAINNLQST--YAGFGS 242
Query: 251 IVNEDVLEVTGVIPKPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASS 310
I +E+V +V P P + K +L+ +E I +AY + H + + S
Sbjct: 243 ITSENVFKVCDE-PHPQLIK-------SMLDHCVEADIDKAY------EIMHHMSHMGYS 288
Query: 311 LSDKQKALFKALET 324
D +F++ +T
Sbjct: 289 ADDIITNIFRSCKT 302
>gi|401840377|gb|EJT43220.1| RFC4-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 323
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/267 (41%), Positives = 154/267 (57%), Gaps = 17/267 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK + D++ +E + L++ ++PH + G P GKT+++ H+L G
Sbjct: 9 LPWVEKYRPKVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPSIGKTTSVHCLAHELLG 68
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ Y + +LELNASDDRGI V+R+++K FAQ+ P KI+ILDEADSMT
Sbjct: 69 NSYADGVLELNASDDRGIDVVRNQIKHFAQKKLH------LPQGRHKIIILDEADSMTAG 122
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME + STRF CN + II+PL SRC+ R+ L++ +L RL I + E
Sbjct: 123 AQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLEIIKLE 182
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
V LE ++ T+ GDMR+AI LQS G +VN D + P P I K +
Sbjct: 183 DVKYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHDLVNADNVFRIVDSPHPLIVKKM 239
Query: 273 KV-----DSFQVLEKYIEDLILEAYSA 294
+ DS Q+L DL + YS+
Sbjct: 240 LLATNLDDSIQILR---TDLWKKGYSS 263
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 11/140 (7%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV----- 375
LE ++ T+ GDMR+AI LQS G +VN D + P+P I K + +
Sbjct: 190 GLEAIIFTAEGDMRQAINNLQSTV---AGHDLVNADNVFRIVDSPHPLIVKKMLLATNLD 246
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
DS Q+L DL + YS+ + + + + + + + +++++ + R+ +G
Sbjct: 247 DSIQILR---TDLWKKGYSSIDIVTTSFRVTKNLTQVKESVRLEMIKEIGLTHMRILEGV 303
Query: 436 SEYIQILDLGSIVIKANKTA 455
Y+Q+ + + + + N A
Sbjct: 304 GTYLQLAGMLAKIHRLNTKA 323
>gi|224013894|ref|XP_002296611.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
gi|220968963|gb|EED87307.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
Length = 336
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 99/226 (43%), Positives = 141/226 (62%), Gaps = 8/226 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ +DDV+ ++ + L+ ++P+ + GPPGTGKT+++ A QL G
Sbjct: 19 PWVEKYRPRNLDDVVGNEDTLVRLRAIAEDGNMPNLILCGPPGTGKTTSVHALARQLLGS 78
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
Y +LELNASD RGI V+R+K+K FA N+ P KI+ILDEADSMT AA
Sbjct: 79 AYSNGVLELNASDSRGIDVVRNKIKGFA------MNKVNLPVGRHKIIILDEADSMTSAA 132
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTME + +TRF L CN + II+P+ SR + R+ L + +L RL+++C +E
Sbjct: 133 QQALRRTMEIYSNTTRFALACNVSTKIIEPIQSRAAILRYSRLTDEQILNRLKFVCGEEE 192
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 259
V D LE ++ T+ GDMR A+ +Q A + G E + +V +V
Sbjct: 193 VSYDDGGLEAIIFTAEGDMRNALNNIQ--ATVSGFEHVSQTNVFKV 236
>gi|346973023|gb|EGY16475.1| replication factor C subunit 3 [Verticillium dahliae VdLs.17]
Length = 393
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/249 (42%), Positives = 147/249 (59%), Gaps = 19/249 (7%)
Query: 13 DAPSSSKTSVS---TSGK--TRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCL 61
D P S + S T GK N PV PWVEKYRP T+ DV ++++ + K +
Sbjct: 11 DVPVSKDITFSSEATKGKRSAANLPVEAEDSLPWVEKYRPATLADVSGHHDILATINKFV 70
Query: 62 SGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTF 120
LPH L YGPPGTGKTST++A +++G + R+ +LELNASDDRGI V+R+++KTF
Sbjct: 71 DKNRLPHLLLYGPPGTGKTSTILALARRIYGPENVRQMVLELNASDDRGIDVVREQIKTF 130
Query: 121 AQ-------QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLI 173
A + G +K+++LDEAD+MT+ AQ ALRR MEK T +TRFC+I
Sbjct: 131 ASTKQIFTSARSGGGGGSSSGAAGYKLIVLDEADAMTNTAQMALRRIMEKYTANTRFCII 190
Query: 174 CNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMR 233
NY + L SRC++FRF PL E + + + + E V A + LV + GDMR
Sbjct: 191 ANYAHKLSPALLSRCTRFRFSPLREADIRVLVDRVVDDEGVRIRPDATDALVRLAKGDMR 250
Query: 234 RAITCLQSC 242
RA+ LQ+C
Sbjct: 251 RALNVLQAC 259
>gi|449300715|gb|EMC96727.1| hypothetical protein BAUCODRAFT_34119 [Baudoinia compniacensis UAMH
10762]
Length = 350
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 121/314 (38%), Positives = 173/314 (55%), Gaps = 19/314 (6%)
Query: 12 KDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLF 71
KDA K T+G N +PWVEKYRP +DD++ E + LK ++PH +
Sbjct: 8 KDAGVGVKAH--TNGAPTNFELPWVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHLII 65
Query: 72 YGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131
G PG GKT++++ QL GD Y+E +LELNASD+RGI V+R+++K FAQ+ +
Sbjct: 66 SGMPGIGKTTSILCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVT----- 120
Query: 132 GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
P KIVILDEADSMT AQ ALRRTME + +TRF CN + II+PL SRC+
Sbjct: 121 -LPAGRHKIVILDEADSMTSGAQQALRRTMEIYSGTTRFAFACNQSNKIIEPLQSRCAIL 179
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
R+ L + ++ RL IC+ E+V + LV ++ GDMR+AI LQS G G
Sbjct: 180 RYSRLTDAQVVKRLYQICKAENVEYSDDGIAALVFSAEGDMRQAINNLQSTF---AGFGF 236
Query: 252 VNEDVLEVTGVIPKPW---IEKLLKVDSFQVLEKY---IEDLILEAYSATQLFDQFHDIV 305
V+ D V V+ P ++ +LK Q +++ +++L YS+ + +
Sbjct: 237 VSGD--NVFRVVDSPHPVKVQAMLKSCQEQKVDEALDSLQELWGLGYSSHDIITTMFRVT 294
Query: 306 MLASSLSDKQKALF 319
SLS+ K F
Sbjct: 295 KTLPSLSEHSKLEF 308
>gi|327297458|ref|XP_003233423.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
gi|326464729|gb|EGD90182.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
Length = 352
Score = 199 bits (506), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 123/326 (37%), Positives = 173/326 (53%), Gaps = 33/326 (10%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
SG N +PWVEKYRP +DDV+ E + LK ++PH + G PG GKT++++
Sbjct: 20 SGAPVNYELPWVEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSIL 79
Query: 85 AACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVI 142
QL GD Y+E +LELNASD+RGI V+R+++K FAQ+ + PP K+VI
Sbjct: 80 CLARQLLGDTYKEAVLELNASDERGIDVVRNRIKGFAQKKVT--------LPPGRHKLVI 131
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEADSMT AQ ALRRTME + +TRF CN + II+PL SRC+ R+ L + ++
Sbjct: 132 LDEADSMTSGAQQALRRTMEIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVV 191
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
RL ICE E V + LV ++ GDMR+AI LQS G G V+ D V V
Sbjct: 192 KRLMQICEAEKVKYSDDGIAALVFSAEGDMRQAINNLQSTW---AGFGFVSGD--NVFRV 246
Query: 263 IPKPW---IEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ P ++ ++K + + +L YSA + + +LS+ K
Sbjct: 247 VDSPHPVKVQAMIKACWEGKVDIALDTLNELWELGYSAHDIISTMFRVTKTIPNLSEHSK 306
Query: 317 ALF------------KALETLVETSG 330
F + L+TLV+ SG
Sbjct: 307 LEFIKEIGFTHMRILEGLQTLVQLSG 332
>gi|403411420|emb|CCL98120.1| predicted protein [Fibroporia radiculosa]
Length = 361
Score = 199 bits (506), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 131/358 (36%), Positives = 184/358 (51%), Gaps = 47/358 (13%)
Query: 14 APSSSKTSVSTSGKTRNKP--VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFL- 70
A SS+K +G N P +PWVEKYRP +DD++ E + LK + PH +
Sbjct: 2 ASSSAKGKAPANGNATNLPYELPWVEKYRPHALDDIVGNTETIERLKVIAKDGNCPHIII 61
Query: 71 --------FY--------GPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIR 114
F+ G PG GKT+++ HQL GD Y+E +LELNASD+RGI V+R
Sbjct: 62 SVGPPKHPFFARLMARPKGMPGIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIDVVR 121
Query: 115 DKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172
+K+K FAQ+ + PP KIVILDEADSMT AQ ALRRTME +TRF L
Sbjct: 122 NKIKAFAQKKVT--------LPPGRHKIVILDEADSMTPGAQQALRRTMEIYANTTRFAL 173
Query: 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDM 232
CN + II+P+ SRC+ R+ L + +L RL ICE E V + L L+ TS GDM
Sbjct: 174 ACNMSNKIIEPIQSRCAILRYAKLRDTEILKRLLEICEMEKVQYNDDGLTALIFTSEGDM 233
Query: 233 RRAITCLQSCARLKGGEGIVNEDVLEVTG----VIPKPWIEKLLKVDSFQVLEKYIE--- 285
R+AI LQS G + ++V +V +I + I LK + ++K E
Sbjct: 234 RQAINNLQSTN--SGFSFVSGDNVFKVCDQPHPIIVQSIIRACLKSNIDDAMDKLNELWD 291
Query: 286 ------DLILEAYSATQLFDQFHDIVMLA--SSLSDKQKALFKALETLVETSGGDMRR 335
D+I+ + + FD+ + L + + + + TL++ GG M R
Sbjct: 292 QGYSAVDIIVTIFRVVKTFDEMPEYTKLEYIKEIGWTHMRILEGVGTLIQL-GGLMAR 348
>gi|340623615|ref|YP_004742068.1| replication factor C small subunit [Methanococcus maripaludis X1]
gi|339903883|gb|AEK19325.1| replication factor C small subunit [Methanococcus maripaludis X1]
Length = 315
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 132/210 (62%), Gaps = 7/210 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+ +V+ E++ L + +PH LF G PG GKT+ +A L+G+
Sbjct: 4 PWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGE 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+RE LELN+SD+RGI VIR KVK FA+ G PFK++ LDE+D++T A
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG-------DAPFKVIFLDESDALTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTMEK + RF L CNY S II P+ SRC+ FRF PL ++ L+ I E+E+
Sbjct: 117 QNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKEN 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCA 243
+ + ++ ++ S GDMR+AI LQ+ A
Sbjct: 177 LNLEKGGIDAIIYVSEGDMRKAINVLQTAA 206
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 73/155 (47%), Gaps = 27/155 (17%)
Query: 302 HDIVMLASSLSDKQKALFK--ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE 359
D+V +S+K+ + ++ ++ S GDMR+AI LQ+ A + + E+++
Sbjct: 162 EDLVENLKDISEKENLNLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDE---ITEEIVY 218
Query: 360 VTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL------- 412
P +++ K+ + K++E + QL++ D MS +
Sbjct: 219 KVASKARP--DEIKKMTQLALNGKFVE-------AREQLYNLMIDWGMSGEDILIQVFRE 269
Query: 413 ------SDKQKALILEKLAECNARLQDGASEYIQI 441
S+K+K ++E + EC+ R+ +G++E IQ+
Sbjct: 270 VPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQL 304
>gi|326481689|gb|EGE05699.1| replication factor C subunit 4 [Trichophyton equinum CBS 127.97]
Length = 352
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 123/326 (37%), Positives = 173/326 (53%), Gaps = 33/326 (10%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
SG N +PWVEKYRP +DDV+ E + LK ++PH + G PG GKT++++
Sbjct: 20 SGAPVNYELPWVEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSIL 79
Query: 85 AACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVI 142
QL GD Y+E +LELNASD+RGI V+R+++K FAQ+ + PP K+VI
Sbjct: 80 CLARQLLGDTYKEAVLELNASDERGIDVVRNRIKGFAQKKVT--------LPPGRHKLVI 131
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEADSMT AQ ALRRTME + +TRF CN + II+PL SRC+ R+ L + ++
Sbjct: 132 LDEADSMTSGAQQALRRTMEIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVV 191
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
RL ICE E V + LV ++ GDMR+AI LQS G G V+ D V V
Sbjct: 192 KRLMQICEAEKVKYSDDGIAALVFSAEGDMRQAINNLQSTW---AGFGFVSGD--NVFRV 246
Query: 263 IPKPW---IEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ P ++ ++K + + +L YSA + + +LS+ K
Sbjct: 247 VDSPHPVKVQAMIKACWEGKVDIALDTLNELWDLGYSAHDIISTMFRVTKTIPNLSEHSK 306
Query: 317 ALF------------KALETLVETSG 330
F + L+TLV+ SG
Sbjct: 307 LEFIKEIGFTHMRILEGLQTLVQLSG 332
>gi|410984622|ref|XP_003998626.1| PREDICTED: replication factor C subunit 2 isoform 1 [Felis catus]
Length = 352
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 111/264 (42%), Positives = 159/264 (60%), Gaps = 13/264 (4%)
Query: 8 GKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLP 67
G+LG A S S T+G + +PWVEKYRP + +++ ++ VS L+ ++P
Sbjct: 11 GELG--AQDSVPASGKTAGSASHYELPWVEKYRPVKLSEIVGNEDTVSRLEVFAREGNVP 68
Query: 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASG 127
+ + GPPGTGKT++++ L G +++ +LELNAS+DRGI V+R+K+K FAQQ +
Sbjct: 69 NIIIAGPPGTGKTTSILCLARALLGPAFKDAVLELNASNDRGIDVVRNKIKMFAQQKVT- 127
Query: 128 FNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSR 187
P KI+ILDEADSMT AQ ALRRTME +K+TRF L CN II+P+ SR
Sbjct: 128 -----LPKGRHKIMILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSR 182
Query: 188 CSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG 247
C+ R+ L++ +L RL + EQE V LE ++ T+ GDMR+A+ LQS
Sbjct: 183 CAVLRYTKLSDAQVLARLMTVLEQEKVQYTDDGLEAIIFTAQGDMRQALNNLQSTF---S 239
Query: 248 GEGIVN-EDVLEVTGVIPKPWIEK 270
G G +N E+V +V P P + K
Sbjct: 240 GFGFINSENVFKVCDE-PHPLLVK 262
>gi|308485377|ref|XP_003104887.1| CRE-RFC-2 protein [Caenorhabditis remanei]
gi|308257208|gb|EFP01161.1| CRE-RFC-2 protein [Caenorhabditis remanei]
Length = 329
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 114/301 (37%), Positives = 177/301 (58%), Gaps = 22/301 (7%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
S +++ PWVEKYRP+ + D++ + +VS L+ ++P+ + GPPG GKT+++
Sbjct: 2 SKHLKHELAPWVEKYRPQVLSDIVGNENMVSRLEVIAKEGNVPNIILSGPPGIGKTTSVW 61
Query: 85 AACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILD 144
A +L GD +E +LELNASD+RGI V+R+++KTFAQ + P KI+ILD
Sbjct: 62 ALARELLGDKVKEAVLELNASDERGIDVVRNRIKTFAQTKVT------LPEGRHKIIILD 115
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EADSMT AQ ALRRTME +K+TRF L CN II+P+ SRC+ R+ L+ +L R
Sbjct: 116 EADSMTDGAQQALRRTMELYSKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVELLYR 175
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP 264
++ + + ESV D LE ++ T+ GDMR+A+ LQ A + E + E+VL+V
Sbjct: 176 VKEVAKAESVNYDDGGLEAILFTAQGDMRQALNNLQ--ATVNAYERVNKENVLKVCD--- 230
Query: 265 KPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALET 324
+P + ++K+ + +K+ E A ++ +FH L S D LF+ ++T
Sbjct: 231 EPHPDLMIKMLLYCTEKKFFE--------AAKIIHEFH---RLGFSSDDILSTLFRVVKT 279
Query: 325 L 325
+
Sbjct: 280 V 280
>gi|268576228|ref|XP_002643094.1| C. briggsae CBR-RFC-2 protein [Caenorhabditis briggsae]
Length = 328
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 113/301 (37%), Positives = 176/301 (58%), Gaps = 22/301 (7%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
S +N+ PWVEKYRP+ + D++ + +V LK ++P+ + GPPG GKT+++
Sbjct: 2 SKAQKNELAPWVEKYRPQILADIVGNENIVERLKVIAKEGNVPNIILSGPPGCGKTTSVW 61
Query: 85 AACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILD 144
A +L GD ++ +LELNASD+RGI V+R+++KTFAQ + P KI+ILD
Sbjct: 62 ALARELLGDKVKDAVLELNASDERGIDVVRNRIKTFAQTRVT------LPEGRHKIIILD 115
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EADSMT AQ ALRRTME +K+TRF L CN II+P+ SRC+ R+ L +++R
Sbjct: 116 EADSMTEGAQQALRRTMEIYSKTTRFALACNQSEKIIEPIQSRCALLRYTKLTAAELMSR 175
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP 264
+ + + E V D LE ++ T+ GDMR+A+ LQ A + E + E+VL+V
Sbjct: 176 VVEVAKAEDVNHDDGGLEAILFTAQGDMRQALNNLQ--ATVNAYEQVNKENVLKVCD--- 230
Query: 265 KPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALET 324
+P + ++K+ ++ V K+ E A+++ +FH L S D LF+ ++T
Sbjct: 231 EPHPDLMIKMLAYCVDGKFFE--------ASKIVHEFH---RLGFSSDDIVSTLFRVVKT 279
Query: 325 L 325
+
Sbjct: 280 V 280
>gi|326472467|gb|EGD96476.1| DNA replication factor C subunit [Trichophyton tonsurans CBS
112818]
Length = 352
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 123/326 (37%), Positives = 173/326 (53%), Gaps = 33/326 (10%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
SG N +PWVEKYRP +DDV+ E + LK ++PH + G PG GKT++++
Sbjct: 20 SGAPVNYELPWVEKYRPIFLDDVVGNTETIERLKIIARDGNMPHVIISGMPGIGKTTSIL 79
Query: 85 AACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVI 142
QL GD Y+E +LELNASD+RGI V+R+++K FAQ+ + PP K+VI
Sbjct: 80 CLARQLLGDTYKEAVLELNASDERGIDVVRNRIKGFAQKKVT--------LPPGRHKLVI 131
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEADSMT AQ ALRRTME + +TRF CN + II+PL SRC+ R+ L + ++
Sbjct: 132 LDEADSMTSGAQQALRRTMEIFSTTTRFAFACNQSNKIIEPLQSRCAILRYSRLTDAQVV 191
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
RL ICE E V + LV ++ GDMR+AI LQS G G V+ D V V
Sbjct: 192 KRLMQICEAEKVKYSDDGIAALVFSAEGDMRQAINNLQSTW---AGFGFVSGD--NVFRV 246
Query: 263 IPKPW---IEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK 316
+ P ++ ++K + + +L YSA + + +LS+ K
Sbjct: 247 VDSPHPVKVQAMIKACWEGKVDIALDTLNELWDLGYSAHDIISTMFRVTKTIPNLSEHSK 306
Query: 317 ALF------------KALETLVETSG 330
F + L+TLV+ SG
Sbjct: 307 LEFIKEIGFTHMRILEGLQTLVQLSG 332
>gi|156064851|ref|XP_001598347.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|154691295|gb|EDN91033.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 333
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 112/260 (43%), Positives = 154/260 (59%), Gaps = 14/260 (5%)
Query: 9 KLGKDAPSSSKT--SVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADL 66
++G+ + S++K +T+G T N +PWVEKYRP +DDV+ E + LK ++
Sbjct: 8 EIGESSTSAAKKVLKANTNGVT-NYELPWVEKYRPVFLDDVVGNTETIERLKIIAKDGNM 66
Query: 67 PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTAS 126
PH + G PG GKT++++ QL GD Y+E +LELNASD+RGI V+R+++K FAQ+ +
Sbjct: 67 PHVIISGMPGIGKTTSVLCLARQLLGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVT 126
Query: 127 GFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186
P K+VILDEADSMT AQ ALRRTME + +TRF CN + II+PL S
Sbjct: 127 ------LPAGRHKLVILDEADSMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQS 180
Query: 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246
RC+ R+ L + ++ RL I E E V L LV ++ GDMR+AI LQS
Sbjct: 181 RCAILRYARLTDAQVVKRLLQIIEAEKVEYSEDGLAALVFSAEGDMRQAINNLQSTF--- 237
Query: 247 GGEGIVNEDVLEVTGVIPKP 266
G G VN D V V+ P
Sbjct: 238 AGFGFVNGD--NVFKVVDSP 255
>gi|290986773|ref|XP_002676098.1| predicted protein [Naegleria gruberi]
gi|284089698|gb|EFC43354.1| predicted protein [Naegleria gruberi]
Length = 337
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 149/237 (62%), Gaps = 14/237 (5%)
Query: 20 TSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGK 79
++ S+SG PWVE+YRP +DD++ +E V L+ ++P+ + GPPGTGK
Sbjct: 4 SNSSSSGVPTEMDRPWVERYRPIDMDDIVGNEEAVMRLRVIAEEGNMPNLILSGPPGTGK 63
Query: 80 TSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP- 137
T++++ L G ++Y+E +LELNASD+R + V+R+K+K FAQ+ + PP
Sbjct: 64 TTSIMCLARSLLGKEVYKEAVLELNASDERTLDVVRNKIKQFAQKKVN--------LPPN 115
Query: 138 -FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPL 196
KIVILDEADSMT AAQ A+RR ME + +TRF L CN S II+P+ SRC+ R+K L
Sbjct: 116 RHKIVILDEADSMTSAAQQAMRRIMEIYSSTTRFALACNDSSKIIEPIQSRCALVRYKRL 175
Query: 197 AENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253
+ +LTRL ICE E V LE+++ TS GDMR AI LQ+ + G GIVN
Sbjct: 176 TDAELLTRLIVICELEHVQKTEDGLESILYTSDGDMRNAINSLQATYQ---GFGIVN 229
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE-DVLEVTGVIPNPWIEKLLKVDSFQ 379
LE+++ TS GDMR AI LQ+ + G GIVN +V +V P+P + + Q
Sbjct: 199 GLESILYTSDGDMRNAINSLQATYQ---GFGIVNATNVFKVCDQ-PHPVAIQTIIGSCIQ 254
Query: 380 ----VLEKYIEDLILEAYSATQLFDQFHDIVMS-ASSLSDKQKALILEKLAECNARLQDG 434
+K + L+ E YS+ + +V S A + + + ++++ +C+ R+ DG
Sbjct: 255 GDLMSSQKELTKLMGEGYSSQDVISTLSKVVRSGAVQMPEYAQLQFIKEIGDCHLRISDG 314
Query: 435 ASEYIQILDL 444
+Q+ L
Sbjct: 315 VDTPLQLTAL 324
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,756,896,939
Number of Sequences: 23463169
Number of extensions: 275990762
Number of successful extensions: 928289
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7648
Number of HSP's successfully gapped in prelim test: 6250
Number of HSP's that attempted gapping in prelim test: 899555
Number of HSP's gapped (non-prelim): 19759
length of query: 456
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 310
effective length of database: 8,933,572,693
effective search space: 2769407534830
effective search space used: 2769407534830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)