BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12150
(456 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P35249|RFC4_HUMAN Replication factor C subunit 4 OS=Homo sapiens GN=RFC4 PE=1 SV=2
Length = 363
Score = 370 bits (951), Expect = e-102, Method: Compositional matrix adjust.
Identities = 187/328 (57%), Positives = 241/328 (73%), Gaps = 10/328 (3%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ S + + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I ++E+V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ I + + ++ GVIP I+ + + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG 300
Query: 292 YSATQLFDQFHDIVMLASSLSDKQKALF 319
++ATQL +Q HD+V+ ++LSDKQK++
Sbjct: 301 HAATQLVNQLHDVVV-ENNLSDKQKSII 327
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 88/129 (68%), Gaps = 4/129 (3%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVL 381
LV+ S GD+R+AIT LQS RL GG+ I + + ++ GVIP I+ + + SF L
Sbjct: 230 LVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKL 289
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
E ++DLI E ++ATQL +Q HD+V+ ++LSDKQK++I EKLAE + L DGA E++Q+
Sbjct: 290 EAVVKDLIDEGHAATQLVNQLHDVVVE-NNLSDKQKSIITEKLAEVDKCLADGADEHLQL 348
Query: 442 LDLGSIVIK 450
+ L + V++
Sbjct: 349 ISLCATVMQ 357
>sp|Q99J62|RFC4_MOUSE Replication factor C subunit 4 OS=Mus musculus GN=Rfc4 PE=1 SV=1
Length = 364
Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/330 (56%), Positives = 240/330 (72%), Gaps = 13/330 (3%)
Query: 1 MEAFLR------TGKLGKDAPSSSKTSVSTSGKTRN-KPVPWVEKYRPKTIDDVIEQQEV 53
M+AFL+ +L KD + + +SG+T+ KPVPWVEKYRPK +D+V Q EV
Sbjct: 1 MQAFLKGTSVSAKAQLTKD--RGTPATAGSSGETKKVKPVPWVEKYRPKCVDEVAFQDEV 58
Query: 54 VSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQV 112
V+VL+K L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV
Sbjct: 59 VAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQV 118
Query: 113 IRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172
+R+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCL
Sbjct: 119 VREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCL 178
Query: 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDM 232
ICNYVS II+PLTSRCSKFRFKPL++ RL I E+E+V + + LV+ S GD+
Sbjct: 179 ICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDL 238
Query: 233 RRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV---DSFQVLEKYIEDLIL 289
R+AIT LQS RL GG+ + + + ++ GVIP I+ + SF LE +++LI
Sbjct: 239 RKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLID 298
Query: 290 EAYSATQLFDQFHDIVMLASSLSDKQKALF 319
E ++ATQL +Q HD ++ +LSDK K++
Sbjct: 299 EGHAATQLVNQLHDAIIENENLSDKHKSII 328
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 84/129 (65%), Gaps = 3/129 (2%)
Query: 325 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVL 381
LV+ S GD+R+AIT LQS RL GG+ + + + ++ GVIP I+ + SF L
Sbjct: 230 LVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGIFTACHSGSFDKL 289
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
E +++LI E ++ATQL +Q HD ++ +LSDK K++I EKLAE + L DGA E++Q+
Sbjct: 290 EAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKSIITEKLAEVDKCLADGADEHLQL 349
Query: 442 LDLGSIVIK 450
+ L + V++
Sbjct: 350 MSLCATVMQ 358
>sp|Q09843|RFC2_SCHPO Replication factor C subunit 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc2 PE=1 SV=1
Length = 340
Score = 298 bits (763), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 154/307 (50%), Positives = 196/307 (63%), Gaps = 10/307 (3%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
AP + KT + K +PWVE YRPKT+D V Q+ V VLKK L +LPH LFYG
Sbjct: 5 APRNKKTE-----QEAKKSIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYG 59
Query: 74 PPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
PGTGKTST++A +LFG + + R+LELNASD+RGI +IR+KVK+FA+ T + DG
Sbjct: 60 SPGTGKTSTILALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTN-KVDG 118
Query: 133 KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
PCPPFKI+ILDEADSMT AQAALRRTME + TRFCLICNY++ II PL+SRCSK+R
Sbjct: 119 YPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYR 178
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
FKPL M+ RL++I ++V + + LVE SGGDMR+AIT LQS A L G I
Sbjct: 179 FKPLDNENMVKRLEFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPIT 238
Query: 253 NEDVLEVTGVIPKPWIEKLLK---VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLAS 309
V E+ G +P I LL + +E D+ E YS + Q HD+++
Sbjct: 239 ISSVEELAGAVPYNIIRSLLDTAYTKNVSNIETLSRDVAAEGYSTGIILSQLHDVLLKEE 298
Query: 310 SLSDKQK 316
+LS K
Sbjct: 299 TLSSPVK 305
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSF 378
+ LVE SGGDMR+AIT LQS A L G I V E+ G +P I LL +
Sbjct: 207 VNALVECSGGDMRKAITFLQSAANLHQGTPITISSVEELAGAVPYNIIRSLLDTAYTKNV 266
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 438
+E D+ E YS + Q HD+++ +LS K I KL+E + RL DGA E
Sbjct: 267 SNIETLSRDVAAEGYSTGIILSQLHDVLLKEETLSSPVKYKIFMKLSEVDKRLNDGADET 326
Query: 439 IQILDLGSIV 448
+Q+LDL S +
Sbjct: 327 LQLLDLLSSI 336
>sp|P40348|RFC2_YEAST Replication factor C subunit 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC2 PE=1 SV=1
Length = 353
Score = 295 bits (754), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 148/281 (52%), Positives = 194/281 (69%), Gaps = 11/281 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +D+V Q V+VLKK L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADSM 149
D+ + RILELNASD+RGI ++R+KVK FA+ T S + + PCPP+KI+ILDEADSM
Sbjct: 86 DLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L + + RL++I
Sbjct: 146 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFIS 205
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPK 265
EQE+V CD LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P
Sbjct: 206 EQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPH 265
Query: 266 P-WIEKLLKVDS--FQVLEKYIEDLILEAYSATQLFDQFHD 303
IE + KV S F ++KY+ + +SA + +Q H+
Sbjct: 266 DILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHE 306
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 73/130 (56%), Gaps = 7/130 (5%)
Query: 322 LETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPNP-WIEKLLKVD 376
LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P+ IE + KV
Sbjct: 217 LERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVK 276
Query: 377 S--FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 434
S F ++KY+ + +SA + +Q H+ ++ + K I L ++RL +G
Sbjct: 277 SGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNG 336
Query: 435 ASEYIQILDL 444
+E+IQ+L+L
Sbjct: 337 TNEHIQLLNL 346
>sp|Q54MD4|RFC4_DICDI Probable replication factor C subunit 4 OS=Dictyostelium discoideum
GN=rfc4 PE=3 SV=1
Length = 347
Score = 280 bits (717), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 139/293 (47%), Positives = 197/293 (67%), Gaps = 14/293 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWV KYRPKT+DDV Q++V+S LKK L+ +LPH LFYGPPGTGKTST++A ++G
Sbjct: 11 PWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMDIYGP 70
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFA----QQTASGFNQDGKPCPPFKIVILDEADS 148
++ ++R+LELNASD+RGI+V+R K+K FA +T +G P FK++ILDEADS
Sbjct: 71 ELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTG---TSNPGATFKLIILDEADS 127
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQAALRRT+E +K+TRFCL+CNY+S II PL SRC+KFRFKPL + RL++I
Sbjct: 128 MTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKFI 187
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL-EVTGVIPKPW 267
+QE + C+ + + S GDMR+AIT LQS R + ++EDV+ + G +P
Sbjct: 188 SQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANK--ISEDVIYNIAGSLPPQL 245
Query: 268 IEKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
I++L+ K +SF L+ ++ +I + Y +Q+ Q D V+ L+ QK+
Sbjct: 246 IKQLVDCCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQKS 298
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 83/140 (59%), Gaps = 9/140 (6%)
Query: 315 QKALFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL-EVTGVIPNPWIEKLL 373
++++++A++ + S GDMR+AIT LQS R + ++EDV+ + G +P I++L+
Sbjct: 196 EESVYQAIQVV---SNGDMRKAITYLQSAFRFFANK--ISEDVIYNIAGSLPPQLIKQLV 250
Query: 374 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 430
K +SF L+ ++ +I + Y +Q+ Q D V++ L+ QK+ I K+ +
Sbjct: 251 DCCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQKSHITMKIGNVDRN 310
Query: 431 LQDGASEYIQILDLGSIVIK 450
L DG+ E++Q+ DL S ++K
Sbjct: 311 LIDGSEEFLQLFDLSSYIMK 330
>sp|P0C7N7|RFC2_PHANO Replication factor C subunit 2 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=RFC2 PE=3 SV=1
Length = 411
Score = 268 bits (685), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 150/374 (40%), Positives = 204/374 (54%), Gaps = 60/374 (16%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
TS + N+ PWVEKYRPKT+ +V Q + +L + L ++LPH LFYGPPGTGKTST+
Sbjct: 24 TSKQESNRLQPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTI 83
Query: 84 IAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQ---TASGFN---------- 129
+A QL+G ++ + R+LELNASD+RGI ++R KVK FA+Q A +N
Sbjct: 84 LALAKQLYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGE 143
Query: 130 ------QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183
+D CPPFKI++LDEADSMT AQ+ALRRTME ++ TRFCL+CNYV+ II P
Sbjct: 144 AKMVRYRDKYSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDP 203
Query: 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
L SRCSKFRFK L + + R+ I + E V D E LV + GD+R+AIT LQS A
Sbjct: 204 LASRCSKFRFKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQSAA 263
Query: 244 RLKGG----------------------------EGIVNEDVLEVTGVIPKPWIEKL---- 271
RL G I E + E+ GVIP P +
Sbjct: 264 RLVGATQTAGRKKKVVVDDEDEMDIDPPSAPSKTTISLEQIAEIAGVIPAPTLASFSDAL 323
Query: 272 -----LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKALFKALETLV 326
K + + K +E++I E +SA+Q Q ++ VM + D +K + +
Sbjct: 324 FPKSAAKSIRYNEIAKVVENMIAEGWSASQTVSQLYEQVMFDERVEDIKKVRLAGVFSET 383
Query: 327 E---TSGGDMRRAI 337
+ GGD A+
Sbjct: 384 DKRLVDGGDEHLAV 397
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 70/160 (43%), Gaps = 37/160 (23%)
Query: 323 ETLVETSGGDMRRAITCLQSCARLKGG----------------------------EGIVN 354
E LV + GD+R+AIT LQS ARL G I
Sbjct: 242 EELVRVADGDLRKAITFLQSAARLVGATQTAGRKKKVVVDDEDEMDIDPPSAPSKTTISL 301
Query: 355 EDVLEVTGVIPNPWIEKL---------LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDI 405
E + E+ GVIP P + K + + K +E++I E +SA+Q Q ++
Sbjct: 302 EQIAEIAGVIPAPTLASFSDALFPKSAAKSIRYNEIAKVVENMIAEGWSASQTVSQLYEQ 361
Query: 406 VMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 445
VM + D +K + +E + RL DG E++ +LDLG
Sbjct: 362 VMFDERVEDIKKVRLAGVFSETDKRLVDGGDEHLAVLDLG 401
>sp|Q975D3|RFCS_SULTO Replication factor C small subunit OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rfcS PE=3
SV=1
Length = 327
Score = 240 bits (613), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 126/274 (45%), Positives = 175/274 (63%), Gaps = 14/274 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+ W EKYRP+++DD++ Q+++V LK+ + ++PH LF GPPGTGKT+ +A H L+G
Sbjct: 7 ILWAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLYG 66
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D YR+ LELNASD+RGI VIR+KVK FA+ A G PFK+V+LDEAD+MT
Sbjct: 67 DNYRQYFLELNASDERGIDVIRNKVKEFARTVAGG-------NVPFKVVLLDEADNMTAD 119
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME T++TRF L CNY+S II+P+ SR + FRF PL + ++ RL YI + E
Sbjct: 120 AQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLAYIAKNE 179
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI-PKPWIEKL 271
V D KALET+ + + GDMR+AI LQ+ + + G + E V +V G+ PK E +
Sbjct: 180 KVEYDQKALETIYDITQGDMRKAINILQASS-VYG--KVTVEAVYKVLGLAQPKEIREMI 236
Query: 272 ---LKVDSFQVLEKYIEDLILEAYSATQLFDQFH 302
L+ + + EK E L+ S + Q H
Sbjct: 237 MLALQGNFLKAREKLRELLVNYGLSGEDIIKQIH 270
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 84/170 (49%), Gaps = 14/170 (8%)
Query: 283 YIEDLILEAYSATQLFDQF----HDIVMLASSLSDKQKALF--KALETLVETSGGDMRRA 336
Y+ +I S T LF + D+V + ++ +K + KALET+ + + GDMR+A
Sbjct: 143 YLSKIIEPIQSRTALFRFYPLKKEDVVARLAYIAKNEKVEYDQKALETIYDITQGDMRKA 202
Query: 337 ITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL----LKVDSFQVLEKYIEDLILEA 392
I LQ+ + + G + E V +V G+ I ++ L+ + + EK E L+
Sbjct: 203 INILQASS-VYG--KVTVEAVYKVLGLAQPKEIREMIMLALQGNFLKAREKLRELLVNYG 259
Query: 393 YSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
S + Q H ++ + ++ D K L+++ + E R+ +GA + IQ+
Sbjct: 260 LSGEDIIKQIHREVTGNEINIPDDLKVLLVDYIGEVEYRIMEGADDEIQL 309
>sp|O74111|RFC3_BLAAD Replication factor C subunit 3 OS=Blastobotrys adeninivorans
GN=RFC3 PE=3 SV=1
Length = 338
Score = 239 bits (610), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 123/249 (49%), Positives = 164/249 (65%), Gaps = 16/249 (6%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTS 81
V T K N +PWVEKYRP T+D+V + V++ +KK + LPH LF+GPPGTGKT+
Sbjct: 7 VETVEKQENS-LPWVEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTT 65
Query: 82 TMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPCPPF 138
T+IA Q++G YR ILELNASD+RGI V+RD++KTFA Q +SG F
Sbjct: 66 TIIAVARQIYGKNYRNMILELNASDERGIDVVRDQIKTFASTRQIFSSG----------F 115
Query: 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAE 198
K+VILDEAD+MT+AAQ ALRR +EK + TRFC++ NY + L SRC++FRF PL E
Sbjct: 116 KLVILDEADAMTNAAQNALRRIIEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKE 175
Query: 199 NTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKGGEGIVNEDVL 257
+ + RL ++ EQESV +A ++L+ S GDMRRA+ LQ+C A + GE I E V
Sbjct: 176 DAIKHRLAHVIEQESVDLSPEAFQSLLHLSSGDMRRALNVLQACYASVDAGEQISEELVY 235
Query: 258 EVTGVIPKP 266
+ G P+P
Sbjct: 236 DCVGS-PRP 243
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 20/133 (15%)
Query: 320 KALETLVETSGGDMRRAITCLQSC-ARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSF 378
+A ++L+ S GDMRRA+ LQ+C A + GE I E V + G P P D
Sbjct: 196 EAFQSLLHLSSGDMRRALNVLQACYASVDAGEQISEELVYDCVGS-PRP-------ADIR 247
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIVMS-----------ASSLSDKQKALILEKLAEC 427
VL+ ++ A Q + ++ L +K + +L+ L+E
Sbjct: 248 TVLQAVLDGSWESALHTFSYIKQSKGLALADMLTAFAVEFQKLDLQNKTRIALLDGLSEI 307
Query: 428 NARLQDGASEYIQ 440
RL G +E IQ
Sbjct: 308 EWRLSSGGNESIQ 320
>sp|Q54ST4|RFC5_DICDI Probable replication factor C subunit 5 OS=Dictyostelium discoideum
GN=rfc5 PE=3 SV=1
Length = 347
Score = 237 bits (604), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 116/234 (49%), Positives = 154/234 (65%), Gaps = 6/234 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD+I +++ + K + LPH LFYGPPGTGKTST+ A +L+G
Sbjct: 24 LPWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLYG 83
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D Y +LELNASDDRGI V+R+++KTFA + FN P+K++ILDEADSMT+
Sbjct: 84 DNYSRMVLELNASDDRGIDVVREQIKTFAS-SMFFFNT----TVPYKLIILDEADSMTNI 138
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK TK+TRFC++CNYV II L SRC++FRF PL RL+ I E+E
Sbjct: 139 AQTALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEIIEKE 198
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP 266
+V D KA+ ++E GDMR+ + LQS + I E + + TG P P
Sbjct: 199 NVKVDSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGY-PMP 251
>sp|A3DNV9|RFCS_STAMF Replication factor C small subunit OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1
Length = 329
Score = 236 bits (603), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 114/211 (54%), Positives = 148/211 (70%), Gaps = 7/211 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPKT+D++++Q+E+VS LK+ + ++PH LF GPPGTGKT+ H LFG+
Sbjct: 13 WAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFGEN 72
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
YR+ +LELNASD+RGI VIR KVK FA+ + PFKIV+LDEAD+MT AQ
Sbjct: 73 YRQYMLELNASDERGIDVIRSKVKEFARTRVAA-------NIPFKIVLLDEADNMTADAQ 125
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME T +TRF LI NY S II+P+ SRC+ FRF PL + +++RL++I EQE V
Sbjct: 126 QALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQEKV 185
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARL 245
D +ALE + + S GDMRRAI LQ+ A L
Sbjct: 186 EIDEEALEAIHDLSEGDMRRAINILQAAAAL 216
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEKLLKV--- 375
+ALE + + S GDMRRAI LQ+ A L G V D V +V G+ I +++++
Sbjct: 190 EALEAIHDLSEGDMRRAINILQAAAAL----GKVTVDSVYKVVGLAHPREIRQMIQLALA 245
Query: 376 -DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNARLQD 433
+ EK E +I S + Q H + S + D+ K +I + E RL +
Sbjct: 246 GNFNDAREKLRELMINYGLSGVDVIKQVHREIFSTDIKIPDEFKIIIADLAGEIQFRLVE 305
Query: 434 GASEYIQI 441
GA + IQ+
Sbjct: 306 GADDEIQL 313
>sp|Q9UXF5|RFCS_SULSO Replication factor C small subunit OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rfcS
PE=1 SV=1
Length = 330
Score = 236 bits (602), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 111/216 (51%), Positives = 149/216 (68%), Gaps = 7/216 (3%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + + W EKYRPKT+DD++ Q+E++ LKK + ++PH LF GPPGTGKT+ +A
Sbjct: 3 TKVEEILWAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALV 62
Query: 88 HQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
H L+GD Y E LELNASD+RGI VIR+KVK FA+ G PFK+V+LDEAD
Sbjct: 63 HDLYGDNYTEYFLELNASDERGIDVIRNKVKEFARTVIPG-------DIPFKVVLLDEAD 115
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRRTME T++TRF L CNY+S II+P+ SR + FRF PL + ++ RL Y
Sbjct: 116 NMTADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIY 175
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
I + E D KALET+ + + GDMR++I LQ+ +
Sbjct: 176 IAKNEKAEYDQKALETIYDITMGDMRKSINILQAAS 211
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 15/183 (8%)
Query: 283 YIEDLILEAYSATQLFDQF----HDIVMLASSLSDKQKALF--KALETLVETSGGDMRRA 336
Y+ +I S T LF + D+V ++ +KA + KALET+ + + GDMR++
Sbjct: 144 YLSKIIEPIQSRTALFRFYPLKKEDVVNRLIYIAKNEKAEYDQKALETIYDITMGDMRKS 203
Query: 337 ITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSF-QVLEKYIEDLILEA 392
I LQ+ + I E V +V G+ + +++ + F Q +K LI
Sbjct: 204 INILQAAS---AYGKISVEAVFKVLGLAQPKEVREMINLALQGKFTQARDKLRTLLITYG 260
Query: 393 YSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILD-LGSIVIK 450
S + Q H +I S +S++ + L+L+ + E R+ +GA + IQ+ L + I
Sbjct: 261 LSGEDIVKQIHREITSSEIQISEELRVLLLDYIGETEFRIIEGADDEIQLSALLAKMAIY 320
Query: 451 ANK 453
NK
Sbjct: 321 GNK 323
>sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rfcS PE=3 SV=3
Length = 325
Score = 232 bits (592), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 111/211 (52%), Positives = 147/211 (69%), Gaps = 7/211 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+++DD+++Q+ VV LK+ + ++PH LF GPPGTGKT+ A H LFG+
Sbjct: 9 WVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFGEN 68
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
YR+ +LELNASD+RGI VIR+KVK FA+ P PFKIV+LDEAD+MT AQ
Sbjct: 69 YRQYMLELNASDERGINVIREKVKEFARSRTP-------PEIPFKIVLLDEADNMTSDAQ 121
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME + TRF LI NY S II P+ SRC+ FRF+PL++ ++ RL+YI E E V
Sbjct: 122 QALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENEGV 181
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARL 245
+ +AL+ + E S GDMR+AI LQ+ + L
Sbjct: 182 DYEEEALDAIYEISEGDMRKAINVLQAASYL 212
Score = 36.2 bits (82), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 10/128 (7%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEKLLKV--- 375
+AL+ + E S GDMR+AI LQ+ + L G V D V V G+ + ++L
Sbjct: 186 EALDAIYEISEGDMRKAINVLQAASYL----GKVTVDAVYRVVGMAKPREVREMLATALK 241
Query: 376 DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNARLQD 433
F + +++E S + Q H + S + ++ + L + L E + RL +
Sbjct: 242 GDFTAARSLLRKIMIEYGMSGEDVARQIHRELFSTELKMPEELRVLAADYLGEVHYRLVE 301
Query: 434 GASEYIQI 441
G+ + IQ+
Sbjct: 302 GSDDDIQL 309
>sp|O28219|RFCS_ARCFU Replication factor C small subunit OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rfcS PE=1 SV=1
Length = 319
Score = 232 bits (591), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 114/227 (50%), Positives = 150/227 (66%), Gaps = 9/227 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+T+D+V+ Q EV+ LK + ++PH LF GPPGTGKT+T IA LFG+
Sbjct: 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN 66
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R+ +E+NASD+RGI V+R K+K FA+ G PFKI+ LDEAD++T AQ
Sbjct: 67 WRDNFIEMNASDERGIDVVRHKIKEFARTAPIG-------GAPFKIIFLDEADALTADAQ 119
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTME +KS RF L CNYVS II+P+ SRC+ FRFKP+ + M RL ICE+E V
Sbjct: 120 AALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV 179
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
LE L+ SGGD R+AI LQ A + GE + + + ++T
Sbjct: 180 KITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQITA 224
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
LE L+ SGGD R+AI LQ A + GE + + + ++T + +L++ +
Sbjct: 185 GLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQITATARPEEMTELIQTALKGN 242
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQ-FHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
F + ++ L++E S + Q F +I+ + + D K +++KL E + RL +GA
Sbjct: 243 FMEARELLDRLMVEYGMSGEDIVAQLFREII--SMPIKDSLKVQLIDKLGEVDFRLTEGA 300
Query: 436 SEYIQI 441
+E IQ+
Sbjct: 301 NERIQL 306
>sp|A1RWU7|RFCS_THEPD Replication factor C small subunit OS=Thermofilum pendens (strain
Hrk 5) GN=rfcS PE=3 SV=1
Length = 325
Score = 230 bits (587), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 147/209 (70%), Gaps = 7/209 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+++D++++Q+E+V LK+ + ++PH LF GPPGTGKT+ +A H L+G+
Sbjct: 6 WVEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDLYGES 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R+ LELNASD+RGI VIR ++K +A+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRDNTLELNASDERGIDVIRSRIKDYARTLPIG-------DVPFKLVILDEADNMTGDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRRTME +++TRF LI NY S II+P+ SRC+ FRF+PL + RL++I +QE +
Sbjct: 119 QALRRTMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDAFQRLRWIAQQEGI 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCA 243
D ALE + E S GD+R+AI LQ+ +
Sbjct: 179 TVDDGALEAIWEESQGDLRKAINTLQAAS 207
Score = 38.9 bits (89), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 12/143 (8%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP----NPWIEKLLKVD 376
ALE + E S GD+R+AI LQ+ + + + E V G + IE LK +
Sbjct: 184 ALEAIWEESQGDLRKAINTLQAASAI--SRNVTEEVVYAALGRVKPKEVREMIESALKGN 241
Query: 377 SFQVLEKYIEDLILEAY--SATQLFDQFHDIVMSASS--LSDKQKALILEKLAECNARLQ 432
+ +K L+L Y S + H V+S S L D A +L + E N R+
Sbjct: 242 LLEARDKL--RLLLYNYGLSGVDIIRFIHREVLSQKSVRLDDATLAELLVLVGETNYRIV 299
Query: 433 DGASEYIQILDLGSIVIKANKTA 455
+G+ + IQ++ L S + +K A
Sbjct: 300 EGSDDEIQLMALLSKLALVSKKA 322
>sp|Q4JAB0|RFCS_SULAC Replication factor C small subunit OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rfcS PE=3 SV=1
Length = 325
Score = 228 bits (582), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 120/272 (44%), Positives = 167/272 (61%), Gaps = 14/272 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPK++D+++ Q+E+V LKK + ++PH LF GPPGTGKT+ +A L+G+
Sbjct: 7 WAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYGNN 66
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
YR+ LELNASD+RGI VIR+KVK FA+ AS PFK+++LDEAD+MT AQ
Sbjct: 67 YRQYFLELNASDERGIDVIRNKVKEFARTVASN-------NVPFKVILLDEADNMTADAQ 119
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRRTME T++TRF L CNY+S II+P+ SR + FRF PL + ++ RL I + E V
Sbjct: 120 QALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNEKV 179
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
D K +ET+ + + GDMR+AI +Q+ + I E V +V G+ I ++L +
Sbjct: 180 EFDPKGIETIFDITQGDMRKAINVIQAASAYG---KITVETVYKVLGLAQPKEIREMLHL 236
Query: 275 ----DSFQVLEKYIEDLILEAYSATQLFDQFH 302
Q +K E LI S + Q H
Sbjct: 237 ALSGKFLQARDKLRELLINYGLSGEDIIKQVH 268
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 14/170 (8%)
Query: 283 YIEDLILEAYSATQLFDQF----HDIVMLASSLSDKQKALF--KALETLVETSGGDMRRA 336
Y+ +I S T LF + D+V ++ +K F K +ET+ + + GDMR+A
Sbjct: 141 YLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNEKVEFDPKGIETIFDITQGDMRKA 200
Query: 337 ITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV----DSFQVLEKYIEDLILEA 392
I +Q+ + I E V +V G+ I ++L + Q +K E LI
Sbjct: 201 INVIQAASAYG---KITVETVYKVLGLAQPKEIREMLHLALSGKFLQARDKLRELLINYG 257
Query: 393 YSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 441
S + Q H ++ + S+ D K ++++ E R+ +GA + IQ+
Sbjct: 258 LSGEDIIKQVHKELTGNEISIPDDLKVILVDYAGEVEFRIMEGADDEIQL 307
>sp|A4WLY0|RFCS2_PYRAR Replication factor C small subunit 2 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS2 PE=3 SV=1
Length = 322
Score = 226 bits (575), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 111/244 (45%), Positives = 155/244 (63%), Gaps = 10/244 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV + L++ + G ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NY+S II+P+ SR RF PL + + RL+YI + E V
Sbjct: 119 QALRRIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADNEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
ALE + E + GDMRRAI LQ A G+ I E V + G++ + + L
Sbjct: 179 KISDDALEAIYEFTQGDMRRAINALQIAA--TTGKEITEETVAKALGMVSPRLLRETLN- 235
Query: 275 DSFQ 278
D+F+
Sbjct: 236 DAFR 239
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQ 379
ALE + E + GDMRRAI LQ A G+ I E V + G++ + + L D+F+
Sbjct: 184 ALEAIYEFTQGDMRRAINALQIAA--TTGKEITEETVAKALGMVSPRLLRETLN-DAFR 239
>sp|A1RV38|RFCS2_PYRIL Replication factor C small subunit 2 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS2 PE=3 SV=1
Length = 320
Score = 225 bits (573), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 147/223 (65%), Gaps = 10/223 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV S L++ + ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NY+S II+P+ SR RF PL + +++RL+YI E E V
Sbjct: 119 QALRRIMEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAENEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
ALET+ E + GDMR+AI LQ A E + EDV+
Sbjct: 179 KISDDALETIYEFTQGDMRKAINALQIAA---ATEKEITEDVV 218
>sp|P53016|RFC4_CAEEL Replication factor C subunit 4 OS=Caenorhabditis elegans GN=rfc-4
PE=1 SV=1
Length = 334
Score = 225 bits (573), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 113/223 (50%), Positives = 154/223 (69%), Gaps = 4/223 (1%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
R K + W EKYRPKT+DD+ Q EVV++LK L G DLPH LFYGPPGTGKTS +A C
Sbjct: 11 RPKVLTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCR 70
Query: 89 QLF-GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
QLF +++ +R+L+LNASD+RGI V+R K+++F++ + +++ KI+ILDE D
Sbjct: 71 QLFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHRED--VLKLKIIILDEVD 128
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQAA+RR +E +K+TRF LICNYVS +I P+ SRC+KFRFK L + RL+
Sbjct: 129 AMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRT 188
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR-LKGGE 249
IC+ E L+ ++E S GD+RRA+ LQS A LK G+
Sbjct: 189 ICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLAPILKSGD 231
>sp|P38629|RFC3_YEAST Replication factor C subunit 3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC3 PE=1 SV=1
Length = 340
Score = 224 bits (572), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 164/248 (66%), Gaps = 10/248 (4%)
Query: 22 VSTSGKTRNKP-VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKT 80
+STS + R+K +PWVEKYRP+T+D+V Q EV++ ++K + LPH LFYGPPGTGKT
Sbjct: 1 MSTSTEKRSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKT 60
Query: 81 STMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
ST++A +++G Y +LELNASDDRGI V+R+++K FA T F++ FK+
Sbjct: 61 STIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKL 113
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
+ILDEAD+MT+AAQ ALRR +E+ TK+TRFC++ NY + L SRC++FRF+PL +
Sbjct: 114 IILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEA 173
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKG-GEGIVNEDVLE 258
+ R+ + E + A + L+E S GDMRR + LQSC A L E +++DV+
Sbjct: 174 IERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIY 233
Query: 259 VTGVIPKP 266
P+P
Sbjct: 234 ECCGAPRP 241
Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 25/159 (15%)
Query: 311 LSDKQKALFKALETLVETSGGDMRRAITCLQSC-ARLKG-GEGIVNEDVLEVTGVIPNPW 368
+ +K K A + L+E S GDMRR + LQSC A L E +++DV+ P P
Sbjct: 183 VHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRP- 241
Query: 369 IEKLLKVDSFQVLEKYIEDLILEAY---------SATQLFDQFHDIV--MSASSLSDKQ- 416
D VL+ +ED A+ L D IV + L +++
Sbjct: 242 ------SDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEET 295
Query: 417 KALILEKLAECNARLQDGASEYIQILDLGSIVIKANKTA 455
+ +L KLA+ + G ++ IQ GS VI A K +
Sbjct: 296 RVHLLTKLADIEYSISKGGNDQIQ----GSAVIGAIKAS 330
>sp|P40937|RFC5_HUMAN Replication factor C subunit 5 OS=Homo sapiens GN=RFC5 PE=1 SV=1
Length = 340
Score = 224 bits (570), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 115/235 (48%), Positives = 156/235 (66%), Gaps = 10/235 (4%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + +PWVEKYRP+T++D+I Q+++S ++K ++ LPH L YGPPGTGKTST++A
Sbjct: 15 TKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACA 74
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ D + +LELNASDDRGI +IR + +FA T + F + FK+VILDEA
Sbjct: 75 KQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFAS-TRTIFKKG------FKLVILDEA 127
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+
Sbjct: 128 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 187
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
++ E+E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 188 HVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG 240
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 21/135 (15%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQV 380
++ LV S GDMRRA+ LQS G + E V TG +P LK D +
Sbjct: 201 GMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG---HP-----LKSDIANI 250
Query: 381 LEKYIEDLILEAY-SATQLFD----QFHDIV------MSASSLSDKQKALILEKLAECNA 429
L+ + AY + T+L HDI+ + + +L K+A+
Sbjct: 251 LDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADIEY 310
Query: 430 RLQDGASEYIQILDL 444
RL G +E IQ+ L
Sbjct: 311 RLSVGTNEKIQLSSL 325
>sp|Q9D0F6|RFC5_MOUSE Replication factor C subunit 5 OS=Mus musculus GN=Rfc5 PE=2 SV=1
Length = 339
Score = 223 bits (569), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 117/249 (46%), Positives = 161/249 (64%), Gaps = 15/249 (6%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
APS + + + R + +PWVEKYRP+T+ D+I Q+++S ++K +S LPH L YG
Sbjct: 5 APSQQRPAAA-----RARNLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYG 59
Query: 74 PPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
PPGTGKTST++A QL+ D + +LELNASDDRGI ++R + +FA T + F +
Sbjct: 60 PPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG- 117
Query: 133 KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
FK+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FR
Sbjct: 118 -----FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFR 172
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
F PL M+ RL+++ ++E+V ++ LV S GDMRRA+ LQS G +
Sbjct: 173 FGPLTPELMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVT 230
Query: 253 NEDVLEVTG 261
E V TG
Sbjct: 231 EETVYTCTG 239
Score = 35.8 bits (81), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 52/135 (38%), Gaps = 21/135 (15%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQV 380
++ LV S GDMRRA+ LQS G + E V TG +P LK D +
Sbjct: 200 GMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG---HP-----LKTDIANI 249
Query: 381 LEKYIEDLILEAYSATQLFDQ-----FHDIVMSAS------SLSDKQKALILEKLAECNA 429
L+ + AY HDI+ + +L K+A+
Sbjct: 250 LDWMLNQDFTTAYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEY 309
Query: 430 RLQDGASEYIQILDL 444
RL G SE IQ+ L
Sbjct: 310 RLSVGTSEKIQLSSL 324
>sp|A1RSA2|RFCS1_PYRIL Replication factor C small subunit 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 223 bits (568), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/288 (41%), Positives = 170/288 (59%), Gaps = 16/288 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV S L++ + ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NYVS II P+ SRC+ FRF P+ + M RL+YI + E V
Sbjct: 119 QALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLKYIAKSEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPW-IEKLLK 273
A++ + E S GDMR+AI LQ A IV+ +V+ +P I +L
Sbjct: 179 EVKEDAIDLIYELSEGDMRKAINILQVAA---ATNKIVDRNVVAAAAAAIRPTDIVELFN 235
Query: 274 V----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQKA 317
+ D + EK E + ++ + F ++ SL D+ KA
Sbjct: 236 LALSGDYLKAREKMRELMYVKGVAGVDFIRAFQR-ELIRMSLDDETKA 282
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 13/136 (9%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL--EVTGVIPNPWIEKL---LKV 375
A++ + E S GDMR+AI LQ A IV+ +V+ + P +E L
Sbjct: 184 AIDLIYELSEGDMRKAINILQVAA---ATNKIVDRNVVAAAAAAIRPTDIVELFNLALSG 240
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
D + EK E + ++ + F ++ SL D+ KA + E LA+ + RL GA
Sbjct: 241 DYLKAREKMRELMYVKGVAGVDFIRAFQRELIRM-SLDDETKAEVAELLADVDYRLTQGA 299
Query: 436 SEYIQ----ILDLGSI 447
E IQ + LGSI
Sbjct: 300 DEEIQLSYFLAKLGSI 315
>sp|Q8ZWS2|RFCS2_PYRAE Replication factor C small subunit 2 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS2 PE=3 SV=1
Length = 319
Score = 223 bits (567), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 147/229 (64%), Gaps = 9/229 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV + L++ + ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NYVS II+P+ SR RF PL + + RL+YI E E V
Sbjct: 119 QALRRIMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAENEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
ALE + E + GDMRRAI LQ A + + + E V + G++
Sbjct: 179 KVSDDALEAIYEFTQGDMRRAINALQIAATV--SKAVTEEVVAKALGMV 225
>sp|A4WGV2|RFCS1_PYRAR Replication factor C small subunit 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 221 bits (563), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 102/209 (48%), Positives = 141/209 (67%), Gaps = 7/209 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV + L++ + G ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NYVS II P+ SRC+ FRF P+ + M RL++I + E +
Sbjct: 119 QALRRIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLRHIAKSEGI 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCA 243
A++ + E S GDMR+AI LQ A
Sbjct: 179 ELRDDAIDLIYEVSEGDMRKAINLLQVAA 207
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEKLLKV---- 375
A++ + E S GDMR+AI LQ A +V+ + V T +I + +L +
Sbjct: 184 AIDLIYEVSEGDMRKAINLLQVAA---ATSKVVDANAVASATTMIRPADVVELFNLAFNG 240
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
D + EK E + ++ + F ++ L D+ KA I E LAE + RL G+
Sbjct: 241 DVTKAREKLRELMYVKGIAGIDFIRAFQRELIRMP-LDDEVKAEIAELLAEVDYRLTQGS 299
Query: 436 SE 437
E
Sbjct: 300 DE 301
>sp|Q8ZYK4|RFCS1_PYRAE Replication factor C small subunit 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 219 bits (557), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 102/209 (48%), Positives = 139/209 (66%), Gaps = 7/209 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV + L++ + ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NYVS II P+ SRC+ FRF P+ + M RL++I + E V
Sbjct: 119 QALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKFIAKNEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCA 243
A+ + E S GDMR+AI LQ A
Sbjct: 179 ELREDAINMIYELSEGDMRKAINLLQVAA 207
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 9/126 (7%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVN--EDVLEVTGVIPNPWIEKL---LKV 375
A+ + E S GDMR+AI LQ A +V+ V P IE +
Sbjct: 184 AINMIYELSEGDMRKAINLLQVAA---ATNKVVDANAVASAAIAVRPADIIELFNLAISG 240
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
D + EK E + L+ + F ++ + D KA I E LA+ + RL GA
Sbjct: 241 DFVKAREKLRELMYLKGIAGADFIRAFQRELIRM-PIDDDIKAEIAELLADVDYRLTQGA 299
Query: 436 SEYIQI 441
E IQ+
Sbjct: 300 DEEIQL 305
>sp|A3MS28|RFCS_PYRCJ Replication factor C small subunit OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=rfcS PE=3 SV=1
Length = 326
Score = 215 bits (548), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 102/209 (48%), Positives = 138/209 (66%), Gaps = 7/209 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ ++V++ +EV + L++ + +LPH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGIGVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NYVS II P+ SRC+ FRF P+ + M RL+ I E V
Sbjct: 119 QALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLREIARSEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCA 243
A++ + E S GDMR+AI LQ A
Sbjct: 179 ELKDDAIDLIYEISEGDMRKAINLLQVAA 207
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 23/141 (16%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVN----------EDVLEVTGVIPNPWIE 370
A++ + E S GDMR+AI LQ A + DVLE+ +
Sbjct: 184 AIDLIYEISEGDMRKAINLLQVAAAVSKVVDANAVASAAAAVRPSDVLELFNLA------ 237
Query: 371 KLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 430
+ D + +K E + ++ + L F ++ L D KA + E L+E + R
Sbjct: 238 --MGGDLAKARDKLRELMYIKGVAGVDLIRVFQRELIRM-QLDDDVKAEVAELLSEVDYR 294
Query: 431 LQDGASEYIQ----ILDLGSI 447
L GA E IQ ++ LGSI
Sbjct: 295 LTQGADEEIQLMYFLMKLGSI 315
>sp|O14003|RFC3_SCHPO Replication factor C subunit 3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc3 PE=1 SV=2
Length = 342
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 98/210 (46%), Positives = 143/210 (68%), Gaps = 7/210 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DV+ ++++S L+K +S +PH LFYGPPGTGKTST++A +++G
Sbjct: 23 LPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYG 82
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR +++ELNASDDRGI +R+++K FA T F FK++ILDEAD+MT A
Sbjct: 83 PNYRNQLMELNASDDRGIDAVREQIKNFA-STRQIF------ASTFKMIILDEADAMTLA 135
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK TK+ RFC+ICNY++ I + SRC++FRF+PL + + ++ + E
Sbjct: 136 AQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSE 195
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSC 242
D A ++ S GDMR+A+ LQ+C
Sbjct: 196 HCNIDPDAKMAVLRLSKGDMRKALNILQAC 225
>sp|P60374|RFCS_NANEQ Replication factor C small subunit OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rfcS PE=3 SV=1
Length = 322
Score = 213 bits (542), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/261 (44%), Positives = 157/261 (60%), Gaps = 19/261 (7%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPK IDD+I Q+E+ LK + ++PH LF GPPGTGKT+ +A H+L+GD
Sbjct: 4 WTEKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYGDA 63
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR KVK FA+ G PFKIV LDEAD++T AQ
Sbjct: 64 WRENFLELNASDERGIDVIRHKVKEFARAKPIG-------DVPFKIVFLDEADALTRDAQ 116
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR MEK ++STRF L CNY S II+P+ SR + F+FKPL + + I + E +
Sbjct: 117 QALRRIMEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEAFRELINRIVKGEGL 176
Query: 215 MCDF--KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
+ + + + L + + GD+R+AI LQ+ A + + D L I KP
Sbjct: 177 ILENEDEIINALYDIAEGDLRKAINILQAAAMM---SKTITVDRLYEIASIAKP-----K 228
Query: 273 KVDSFQVLEKYIEDLILEAYS 293
++D +VL K ++ LEA S
Sbjct: 229 EID--EVLNKAMQGNFLEARS 247
Score = 37.0 bits (84), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 25/133 (18%)
Query: 322 LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVL 381
+ L + + GD+R+AI LQ+ A + + I + + E+ I K ++D +VL
Sbjct: 185 INALYDIAEGDLRKAINILQAAAMM--SKTITVDRLYEIAS------IAKPKEID--EVL 234
Query: 382 EKYIEDLILEAYSATQLFDQFHDIVMSASS-------------LSDKQKALILEKLAECN 428
K ++ LEA S L D MS +SD++K +IL+K+ +
Sbjct: 235 NKAMQGNFLEARS--MLIDLMLKYGMSGEDVIKAIQKRVWSLPISDREKLMILDKIGDIE 292
Query: 429 ARLQDGASEYIQI 441
R+ +GA + +Q+
Sbjct: 293 FRIVEGADDLVQL 305
>sp|Q6L1I0|RFCS_PICTO Replication factor C small subunit OS=Picrophilus torridus (strain
ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
GN=rfcS PE=3 SV=1
Length = 318
Score = 211 bits (536), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 112/240 (46%), Positives = 149/240 (62%), Gaps = 10/240 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPK +DDVI + E ++ LK + DLPH +F GP GTGKTST IA +LFGD
Sbjct: 5 WTEKYRPKRLDDVIGEDENINTLKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELFGDD 64
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++E LELNASD+RGI +IR+ +K FA+ S N+ G FKI+ LDEAD +T+ AQ
Sbjct: 65 WKENFLELNASDERGIDIIRNNIKDFAKIRPS--NKLG-----FKIIFLDEADQLTNEAQ 117
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTME +TRF CNY S II P+ SRC RF+PL + M +L+ I + E
Sbjct: 118 AALRRTMEMFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPLDKEAMERKLREIAKNEKF 177
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
D +L+ + E S GDMR+AI +Q+ GE I + E++G I K + L+ +
Sbjct: 178 DIDDDSLDAIYEISDGDMRKAINVMQAIQ--STGE-IKPSKIYEISGEINKNEYKNLISL 234
Score = 38.9 bits (89), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 14/128 (10%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV----- 375
+L+ + E S GDMR+AI +Q+ GE I + E++G I + L+ +
Sbjct: 183 SLDAIYEISDGDMRKAINVMQAIQ--STGE-IKPSKIYEISGEINKNEYKNLISLSLNGA 239
Query: 376 --DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQD 433
D+ +L+K + D L S + H + + ++++QK IL LAE R+
Sbjct: 240 FSDAKSLLDKMLVDYGL---SGIDIIRGMHSAIRN-ERIANRQKLEILIALAEFEFRISQ 295
Query: 434 GASEYIQI 441
G S+ +Q+
Sbjct: 296 GGSDNVQM 303
>sp|P34429|RFC5_CAEEL Probable replication factor C subunit 5 OS=Caenorhabditis elegans
GN=F44B9.8 PE=3 SV=3
Length = 368
Score = 210 bits (535), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/280 (40%), Positives = 161/280 (57%), Gaps = 9/280 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +D+++ +++V L K + LPH LFYGPPGTGKT+T++AA Q++
Sbjct: 29 LPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYS 88
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQ----QTASGFNQDGKPCPPFKIVILDEAD 147
+LELNASD+RGI V+R+ + FAQ Q S + G PFK+VILDEAD
Sbjct: 89 PTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTG--TVPFKLVILDEAD 146
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR +EK T + RFC+ICNY++ I+ + SRC++FRF PL + ++ RL+Y
Sbjct: 147 AMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEY 206
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL--KGGEGIVNEDVLEVTGVIPK 265
I E E + + L+ S GDMR I LQS A E V + + + T K
Sbjct: 207 IVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTVYQCIGQPTPKEMK 266
Query: 266 PWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305
++ LL S + + L Y+ + HD V
Sbjct: 267 EVVKTLLNDPSKKCMNTIQTKLFENGYALQDVITHLHDFV 306
>sp|Q5UQ72|RFCS4_MIMIV Putative replication factor C small subunit L510 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R510 PE=3 SV=1
Length = 363
Score = 209 bits (532), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 141/213 (66%), Gaps = 1/213 (0%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
++ VPW+EKYRPK ++D+ + Q ++ + K ++ HFLFYGPPGTGKTS ++A +
Sbjct: 4 DESVPWIEKYRPKKLEDITQSQNLLDLFKNSTKKGEMTHFLFYGPPGTGKTSAILAMGRE 63
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN-QDGKPCPPFKIVILDEADS 148
+F + ++ R++E NASDDRGI +R+K+ A++ + +DG P +KI+ILDEADS
Sbjct: 64 IFKEHFQNRVIEFNASDDRGINAVREKITNEAKKYVAEIKLEDGTIIPSYKIIILDEADS 123
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALR +E+ + +TRFC ICNY++ I + SRCS FK L++ M+ +L I
Sbjct: 124 MTDEAQDALRVIIEQYSTATRFCFICNYITKITDAIKSRCSSVYFKKLSDECMVEKLNDI 183
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
+ES+ L T+++ S GDMR+AI LQ+
Sbjct: 184 SLKESMELPKNILHTIIDVSNGDMRKAIMLLQN 216
>sp|Q3ITJ2|RFCS_NATPD Replication factor C small subunit OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=rfcS PE=3 SV=1
Length = 325
Score = 209 bits (531), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 97/232 (41%), Positives = 147/232 (63%), Gaps = 11/232 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DD++ + + LK+ ++ DLPH LF GP G GKT+ A +++GD
Sbjct: 14 WIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGDD 73
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD RGI V+RD++K+FA+ + G++ +I+ LDEAD++T AQ
Sbjct: 74 WRENFLELNASDQRGIDVVRDRIKSFARASFGGYDH--------RIIFLDEADALTSDAQ 125
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL + + +++ I + E +
Sbjct: 126 SALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDEQIRIIADTEGI 185
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP 266
++ LV + GDMR+AI LQ+ A + G V+E+ + +P
Sbjct: 186 ELTDDGVDALVYAADGDMRKAINGLQAAAVMG---GTVDEEAVYTITSTARP 234
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL--KVDS- 377
++ LV + GDMR+AI LQ+ A + G + E V +T I +++ +D
Sbjct: 191 GVDALVYAADGDMRKAINGLQAAAVMGGT--VDEEAVYTITSTARPEEIREMVTEAMDGD 248
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F +E L+ + + + DQ H V L +++ ++E++ E + R+ GAS
Sbjct: 249 FTAARSQLETLLTDVGIAGGDIIDQLHRSVWE-FDLEEREAVQLMERIGEADYRITAGAS 307
>sp|Q5UZE5|RFCS_HALMA Replication factor C small subunit OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rfcS PE=3 SV=2
Length = 325
Score = 208 bits (530), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 97/209 (46%), Positives = 137/209 (65%), Gaps = 8/209 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DDV+ + +V LK +S DL H LF GP GTGKT+ A +L+GD
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI V+RD++K FA+ + G ++I+ LDEAD++T AQ
Sbjct: 76 WREHFLELNASDERGIDVVRDRIKNFARTSFGGV--------EYRIIFLDEADALTSDAQ 127
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + + RF L CNY S II P+ SRC+ FRF PLA++ + ++ I +E +
Sbjct: 128 SALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDI 187
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCA 243
L+ LV + GDMR+AI LQ+ +
Sbjct: 188 ELTEDGLDALVYAADGDMRKAINGLQAAS 216
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK--VDSF 378
L+ LV + GDMR+AI LQ+ + G+ + V +T I +++ +D
Sbjct: 193 GLDALVYAADGDMRKAINGLQAAS--VSGDTVDESAVYAITSTARPEEIRTMVQSALDGD 250
Query: 379 QVLEKYIEDLIL--EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
+ D +L E + + DQ H + + D +LE++ E + R+ GA+
Sbjct: 251 FTASRATLDRLLTEEGIAGGDIIDQLHRSIWEF-DIDDDAAVRVLERIGETDYRITRGAN 309
Query: 437 EYIQI 441
E +Q+
Sbjct: 310 ERVQL 314
>sp|Q5UP47|RFCS3_MIMIV Putative replication factor C small subunit L499 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_L499 PE=3 SV=1
Length = 344
Score = 207 bits (528), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 107/231 (46%), Positives = 145/231 (62%), Gaps = 2/231 (0%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K +PWVEKYRP+ ID +I ++++ LKK + LPH LF+GP G+GKTST+ ++
Sbjct: 15 KQLPWVEKYRPQEIDHIISNRDIILSLKKFIESRTLPHLLFFGPSGSGKTSTIKCCAREI 74
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+G ILELNAS++RGI+ +R K+K F +S F G FK+VILDE DSMT
Sbjct: 75 YGKYINYMILELNASNERGIETVRTKIKNFVSSKSSIFLPMGVR-DIFKLVILDEIDSMT 133
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ LR+T+EK + +TRFCLICN + I L SRC+ FRF PL E M RL IC
Sbjct: 134 VEAQGMLRQTIEKNSGTTRFCLICNDIDKINIALQSRCASFRFSPLNELDMHGRLSDICR 193
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
E V + +A+ ++++ S GDMR AI LQ + GG I EDV +++G
Sbjct: 194 LEGVKYEKEAINSIIKISKGDMRSAINTLQHVNLVIGG-SINTEDVYKISG 243
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG-----VIPNPW-IEKLL 373
+A+ ++++ S GDMR AI LQ + GG I EDV +++G ++ + + I L
Sbjct: 202 EAINSIIKISKGDMRSAINTLQHVNLVIGG-SINTEDVYKISGHCMPEIVTDVFDILFSL 260
Query: 374 KVDSFQVLEKYIEDLIL----EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 426
+ + L+K + D+I + L ++ +IVM S + QK +++ A+
Sbjct: 261 NKNKTKSLKKSVNDIITIVTENNITIFNLLEELKNIVME-SKFTTSQKIFLIDNFAK 316
>sp|Q9HN27|RFCS_HALSA Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rfcS PE=3
SV=1
Length = 322
Score = 207 bits (528), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/272 (38%), Positives = 159/272 (58%), Gaps = 14/272 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+ ++DV+ ++ L+ + DLPH LF GP GTGKT++ ++ +L+GD
Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDD 71
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+++ LELNASD+RGI V+RD++K FA+ + G N ++++ LDEAD++T AQ
Sbjct: 72 WQDNFLELNASDERGIDVVRDRIKDFARSSFGGHN--------YRVIFLDEADALTDDAQ 123
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L ++ + L+ I E E +
Sbjct: 124 SALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGL 183
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
++ LV + GDMRRAI LQ+ + G+ + E V +T IE ++
Sbjct: 184 EHTDDGIDALVYAADGDMRRAINALQAAS--ATGDSVNEETVYAITATARPEEIETMVTE 241
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFH 302
F ++DL+ + + DQ H
Sbjct: 242 ALGGDFAAARATLDDLLTNRGLAGGDIIDQVH 273
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
++ LV + GDMRRAI LQ+ + G+ + E V +T IE ++
Sbjct: 189 GIDALVYAADGDMRRAINALQAAS--ATGDSVNEETVYAITATARPEEIETMVTEALGGD 246
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F ++DL+ + + DQ H V + + +L++L E + R+ +GA+
Sbjct: 247 FAAARATLDDLLTNRGLAGGDIIDQVHRSVWE-FDVEEAAAVRLLDRLGEADYRIAEGAN 305
Query: 437 EYIQI 441
E +Q+
Sbjct: 306 ERVQL 310
>sp|B0R7H7|RFCS_HALS3 Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rfcS PE=3 SV=1
Length = 322
Score = 207 bits (528), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/272 (38%), Positives = 159/272 (58%), Gaps = 14/272 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+ ++DV+ ++ L+ + DLPH LF GP GTGKT++ ++ +L+GD
Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDD 71
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+++ LELNASD+RGI V+RD++K FA+ + G N ++++ LDEAD++T AQ
Sbjct: 72 WQDNFLELNASDERGIDVVRDRIKDFARSSFGGHN--------YRVIFLDEADALTDDAQ 123
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L ++ + L+ I E E +
Sbjct: 124 SALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGL 183
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLKV 274
++ LV + GDMRRAI LQ+ + G+ + E V +T IE ++
Sbjct: 184 EHTDDGIDALVYAADGDMRRAINALQAAS--ATGDSVNEETVYAITATARPEEIETMVTE 241
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFH 302
F ++DL+ + + DQ H
Sbjct: 242 ALGGDFAAARATLDDLLTNRGLAGGDIIDQVH 273
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS 377
++ LV + GDMRRAI LQ+ + G+ + E V +T IE ++
Sbjct: 189 GIDALVYAADGDMRRAINALQAAS--ATGDSVNEETVYAITATARPEEIETMVTEALGGD 246
Query: 378 FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 436
F ++DL+ + + DQ H V + + +L++L E + R+ +GA+
Sbjct: 247 FAAARATLDDLLTNRGLAGGDIIDQVHRSVWE-FDVEEAAAVRLLDRLGEADYRIAEGAN 305
Query: 437 EYIQI 441
E +Q+
Sbjct: 306 ERVQL 310
>sp|O26343|RFCS_METTH Replication factor C small subunit OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rfcS PE=1 SV=1
Length = 321
Score = 207 bits (526), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 110/297 (37%), Positives = 167/297 (56%), Gaps = 18/297 (6%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ +DD++ Q+ ++ LK+ + +P+ +F GP G GKT+ +A ++ G+
Sbjct: 7 PWVEKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALAREILGE 66
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R+ LELNASD RGI +R +K F + G PF+I+ LDE D+MT A
Sbjct: 67 YWRQNFLELNASDARGIDTVRTSIKNFCRLKPVG--------APFRIIFLDEVDNMTKDA 118
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME TK++ F L CNY S II P+ SRC+ FRF PL + ++ RL+YI E+E+
Sbjct: 119 QHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQIIKRLEYIAEKEN 178
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK 273
+ + ALET+V + GD+R+AI LQS A L GE I + +V + K++K
Sbjct: 179 LEYEAHALETIVYFAEGDLRKAINLLQSAASL--GEKITESSIYDVVSRARPKDVRKMIK 236
Query: 274 V----DSFQVLEKYIEDLILEAYSA----TQLFDQFHDIVMLASSLSDKQKALFKAL 322
+ + E ++L+ S TQ++ + + M D+ L A+
Sbjct: 237 TILDGKFMEARDMLREIMVLQGISGEDMVTQIYQELSRLAMEGEVDGDRYVGLIDAI 293
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 13/150 (8%)
Query: 302 HDIVMLASSLSDKQKALFKA--LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE 359
H I+ +++K+ ++A LET+V + GD+R+AI LQS A L GE I + +
Sbjct: 164 HQIIKRLEYIAEKENLEYEAHALETIVYFAEGDLRKAINLLQSAASL--GEKITESSIYD 221
Query: 360 VTGVIPNPWIEKLLKV----DSFQVLEKYIEDLILEAYSA----TQLFDQFHDIVMSASS 411
V + K++K + + E ++L+ S TQ++ + + M
Sbjct: 222 VVSRARPKDVRKMIKTILDGKFMEARDMLREIMVLQGISGEDMVTQIYQELSRLAMEGEV 281
Query: 412 LSDKQKALILEKLAECNARLQDGASEYIQI 441
D+ LI + + E + R+++GA+ IQ+
Sbjct: 282 DGDRYVGLI-DAIGEYDFRIREGANPRIQL 310
>sp|Q8PVY4|RFCS_METMA Replication factor C small subunit OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=rfcS PE=3 SV=1
Length = 338
Score = 207 bits (526), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 105/276 (38%), Positives = 164/276 (59%), Gaps = 12/276 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
W+EKYRP ++ V Q+E + L ++ +LPH LF GPPG GKT++ ++ ++FG D
Sbjct: 15 WIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
++RE ELNASD+RGI ++R+K+K FA+ G PFKI+ LDEAD++T A
Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAKTAPMG-------GAPFKIIFLDEADALTSDA 127
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q+ALRRTMEK + + RF L CNY S II+P+ SRC+ +RF+ L++ + RL+YI +++
Sbjct: 128 QSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKEQD 187
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK 273
+ E L+ + GDMR+A+ LQ+ A + + I E + T I+ L++
Sbjct: 188 LSITDGGYEALIYVAQGDMRKAVNSLQAAAFIDVEKPISRETIYRTTATANPEEIKNLIE 247
Query: 274 V---DSFQVLEKYIEDLIL-EAYSATQLFDQFHDIV 305
+F+V K + L+ E S + Q + +V
Sbjct: 248 TALRGNFRVARKELNRLLYEEGLSGEDIVGQIYRVV 283
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 323 ETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQ 379
E L+ + GDMR+A+ LQ+ A + + I E + T I+ L++ +F+
Sbjct: 196 EALIYVAQGDMRKAVNSLQAAAFIDVEKPISRETIYRTTATANPEEIKNLIETALRGNFR 255
Query: 380 VLEKYIEDLIL-EAYSATQLFDQFHDIVMSASS-------LSDKQKALILEKLAECNARL 431
V K + L+ E S + Q + +V + LS++ +++ + E + RL
Sbjct: 256 VARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMILDLGLSERDIVGLVDIIGETDFRL 315
Query: 432 QDGASEYIQI 441
+GASE IQ+
Sbjct: 316 TEGASEKIQL 325
>sp|Q8TSX5|RFCS_METAC Replication factor C small subunit OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rfcS
PE=3 SV=1
Length = 338
Score = 207 bits (526), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/276 (37%), Positives = 162/276 (58%), Gaps = 12/276 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
W+EKYRP ++ V Q E + LK ++ +LPH LF GPPG GKT++ ++ ++FG D
Sbjct: 15 WIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
++RE ELNASD+RGI ++R+K+K FA+ G PFKI+ LDEAD++T A
Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAKTAPIG-------GAPFKIIFLDEADALTADA 127
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q+ALRRTME+ + + RF L CNY S II+P+ SRC+ +RF+ L++ + RL+YI +
Sbjct: 128 QSALRRTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAGDQG 187
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK 273
+ E L+ + GDMR+A+ LQ+ A + + I E + T I+ L++
Sbjct: 188 LSITEGGYEALIYVAQGDMRKAVNSLQAAAFIDTDKSISRETIYRTTATANPEEIKNLIE 247
Query: 274 V---DSFQVLEKYIEDLIL-EAYSATQLFDQFHDIV 305
+F++ K + L+ E S + Q + +V
Sbjct: 248 TALRGNFRIARKELNRLLYEEGLSGEDIVGQIYRVV 283
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 11/130 (8%)
Query: 323 ETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQ 379
E L+ + GDMR+A+ LQ+ A + + I E + T I+ L++ +F+
Sbjct: 196 EALIYVAQGDMRKAVNSLQAAAFIDTDKSISRETIYRTTATANPEEIKNLIETALRGNFR 255
Query: 380 VLEKYIEDLIL-EAYSATQLFDQFHDIVMSASS-------LSDKQKALILEKLAECNARL 431
+ K + L+ E S + Q + +V + L+++ +++ + E + RL
Sbjct: 256 IARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMVLDLGLTERDIVALVDVIGETDFRL 315
Query: 432 QDGASEYIQI 441
+GASE IQ+
Sbjct: 316 TEGASEKIQL 325
>sp|Q46C63|RFCS_METBF Replication factor C small subunit OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rfcS PE=3 SV=1
Length = 334
Score = 206 bits (523), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 105/260 (40%), Positives = 155/260 (59%), Gaps = 11/260 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
W+EKYRP +D V Q+E + LK ++ +LPH LF GPPG GKT++ ++ ++FG D
Sbjct: 11 WIEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 70
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
++RE ELNASD+RGI V+R K+K FA+ G FKI+ LDEAD++T A
Sbjct: 71 LWRENFTELNASDERGIDVVRTKIKNFAKTAPMG-------GAEFKIIFLDEADALTSDA 123
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q+ALRRTME+ + + RF L CNY S II+P+ SRC+ FRF+ L++ + RL+YI + +
Sbjct: 124 QSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKRLEYIAKDQV 183
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLLK 273
+ E LV S GDMR+A+ LQ+ A ++ + I + T I L++
Sbjct: 184 LSITEDGYEALVYVSQGDMRKAVNSLQAAAFVEPNKSISRGTIYRTTATANPEDIRNLIE 243
Query: 274 V---DSFQVLEKYIEDLILE 290
+F+V K + L+ E
Sbjct: 244 TALRGNFRVARKELNRLLYE 263
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 15/132 (11%)
Query: 323 ETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----WIEKLLKVDS 377
E LV S GDMR+A+ LQ+ A ++ + I + T NP IE L+ +
Sbjct: 192 EALVYVSQGDMRKAVNSLQAAAFVEPNKSISRGTIYRTTAT-ANPEDIRNLIETALR-GN 249
Query: 378 FQVLEKYIEDLIL-EAYSATQLFDQFHDIVMSASS-------LSDKQKALILEKLAECNA 429
F+V K + L+ E S + Q + + + LS+K+ +++ + E +
Sbjct: 250 FRVARKELNRLLYEEGLSGEDIVGQIYRAISEMDNRMILDLGLSEKRIVELVDIIGEIDF 309
Query: 430 RLQDGASEYIQI 441
RL +GA+E IQ+
Sbjct: 310 RLTEGATEKIQL 321
>sp|P40339|RFC4_YEAST Replication factor C subunit 4 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC4 PE=1 SV=1
Length = 323
Score = 205 bits (521), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 115/275 (41%), Positives = 159/275 (57%), Gaps = 21/275 (7%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
KT + +PWVEKYRP+ + D++ +E + L++ ++PH + G PG GKT+++
Sbjct: 3 KTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCL 62
Query: 87 CHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILD 144
H+L G Y + +LELNASDDRGI V+R+++K FAQ+ PP KIVILD
Sbjct: 63 AHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLH--------LPPGKHKIVILD 114
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EADSMT AQ ALRRTME + STRF CN + II+PL SRC+ R+ L++ +L R
Sbjct: 115 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKR 174
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP 264
L I + E V LE ++ T+ GDMR+AI LQS G G+VN D + P
Sbjct: 175 LLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNADNVFKIVDSP 231
Query: 265 KPWIEKLLKV-----DSFQVLEKYIEDLILEAYSA 294
P I K + + DS Q+L DL + YS+
Sbjct: 232 HPLIVKKMLLASNLEDSIQILR---TDLWKKGYSS 263
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV----- 375
LE ++ T+ GDMR+AI LQS G G+VN D + P+P I K + +
Sbjct: 190 GLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNADNVFKIVDSPHPLIVKKMLLASNLE 246
Query: 376 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 435
DS Q+L DL + YS+ + + + + + + + +++++ + R+ +G
Sbjct: 247 DSIQILR---TDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGV 303
Query: 436 SEYIQILDLGSIVIKANKTA 455
Y+Q+ + + + K N A
Sbjct: 304 GTYLQLASMLAKIHKLNNKA 323
>sp|A6US36|RFCS_METVS Replication factor C small subunit OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rfcS PE=3 SV=1
Length = 315
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 139/224 (62%), Gaps = 10/224 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ +D+V+ QE++ LK + +PH LF G PG GKT+ + L+G+
Sbjct: 4 PWVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYGN 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
++E LELN+SD+RGI VIR KVK FA+ G PFK++ LDE+D++T A
Sbjct: 64 TWKENFLELNSSDERGIDVIRTKVKDFARTKPIG-------DAPFKVIFLDESDALTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTMEK + RF L CNY S II P+ SRC+ FRF PL ++ L+ I E+ES
Sbjct: 117 QNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEISEKES 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
+ + ++ ++ S GDMR+AI LQ+ A + +NE V+
Sbjct: 177 INVEKSGMDAIIYVSEGDMRKAINVLQTGAAVSKN---INETVI 217
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 25/134 (18%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQV 380
++ ++ S GDMR+AI LQ+ A + +NE V+ P +++ K+ +
Sbjct: 183 GMDAIIYVSEGDMRKAINVLQTGAAVSKN---INETVIYKVASKARP--DEIKKMTELAL 237
Query: 381 LEKYIEDLILEAYSATQLFDQFHDIVMSAS-------------SLSDKQKALILEKLAEC 427
K++E + QL+ D MS +S+K+K ++E + EC
Sbjct: 238 NGKFVE-------AREQLYKLMIDWGMSGEDIIIQIFREVPNLEISEKEKVHLVEAIGEC 290
Query: 428 NARLQDGASEYIQI 441
+ R+ +GA+E IQ+
Sbjct: 291 DFRIVEGANERIQL 304
>sp|O94449|RFC4_SCHPO Replication factor C subunit 4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc4 PE=1 SV=1
Length = 342
Score = 201 bits (511), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 108/249 (43%), Positives = 148/249 (59%), Gaps = 17/249 (6%)
Query: 17 SSKTSVSTSGKTRNK---PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
S+ S S G+ N +PWVEKYRP +DD++ +E + LK ++PH + G
Sbjct: 2 SNAVSSSVFGEKNNSVAYELPWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISG 61
Query: 74 PPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133
PG GKT++++ H L G Y+E +LELNASD+RGI V+R+++K FAQ+
Sbjct: 62 MPGIGKTTSILCLAHALLGPAYKEGVLELNASDERGIDVVRNRIKAFAQKKVI------- 114
Query: 134 PCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
PP KI+ILDEADSMT AQ ALRRTME + +TRF L CN + II+P+ SRC+
Sbjct: 115 -LPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAIL 173
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
R+ L + +L RL IC+ E V L L+ T+ GDMR+A+ LQS G G+
Sbjct: 174 RYSRLTDQQVLQRLLNICKAEKVNYTDDGLAALIMTAEGDMRQAVNNLQSTV---AGFGL 230
Query: 252 VN-EDVLEV 259
VN E+V V
Sbjct: 231 VNGENVFRV 239
>sp|Q6M044|RFCS_METMP Replication factor C small subunit OS=Methanococcus maripaludis
(strain S2 / LL) GN=rfcS PE=3 SV=1
Length = 315
Score = 201 bits (510), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 132/210 (62%), Gaps = 7/210 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+ +V+ E++ L + +PH LF G PG GKT+ +A L+GD
Sbjct: 4 PWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGD 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+RE LELN+SD+RGI VIR KVK FA+ G PFK++ LDE+D++T A
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG-------DAPFKVIFLDESDALTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTMEK + RF L CNY S II P+ SRC+ FRF PL ++ L+ I E+E+
Sbjct: 117 QNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKEN 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCA 243
+ + ++ ++ S GDMR+AI LQ+ A
Sbjct: 177 LNLEKGGIDAIIYVSEGDMRKAINVLQTAA 206
Score = 40.4 bits (93), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 73/155 (47%), Gaps = 27/155 (17%)
Query: 302 HDIVMLASSLSDKQKALFK--ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE 359
D+V +S+K+ + ++ ++ S GDMR+AI LQ+ A + + E+++
Sbjct: 162 EDLVENLKDISEKENLNLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDE---ITEEIVY 218
Query: 360 VTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL------- 412
P +++ K+ + K++E + QL++ D MS +
Sbjct: 219 KVASKARP--DEIKKMTQLALNGKFVE-------AREQLYNLMIDWGMSGEDILIQVFRE 269
Query: 413 ------SDKQKALILEKLAECNARLQDGASEYIQI 441
S+K+K ++E + EC+ R+ +G++E IQ+
Sbjct: 270 VPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQL 304
>sp|Q0W037|RFCS_UNCMA Replication factor C small subunit OS=Uncultured methanogenic
archaeon RC-I GN=rfcS PE=3 SV=1
Length = 322
Score = 200 bits (509), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/276 (39%), Positives = 157/276 (56%), Gaps = 21/276 (7%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP+ ++DVI Q++ L + +LPH LF GPPG GKT+ +A +L+G+
Sbjct: 7 WTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARELYGET 66
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+ +ELNASD+RGI V+R+ +K FA+ G + FKI+ LDEAD++T AQ
Sbjct: 67 WHSNFIELNASDERGIDVVRNNIKNFARTAPLGEAK-------FKIIFLDEADALTSDAQ 119
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + RF + CNY S II+P+ SRC+ +RF PL + T + I + E +
Sbjct: 120 SALRRTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITTGITRIAKNEGL 179
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKP-WIEKLLK 273
+ ++ L+ + GDMRRAI LQS A + + DV+ T KP IE +LK
Sbjct: 180 KIEKDGMDALIYVARGDMRRAINALQSAATIAKD---ITADVIYQTTSTAKPKEIEDMLK 236
Query: 274 V-------DSFQVLEKYIEDLILEAYSATQLFDQFH 302
+ DS L+ E LI S T + DQ +
Sbjct: 237 LALNGQFMDSRNKLD---ELLITYGLSGTDIIDQIY 269
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 13/128 (10%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV----- 375
++ L+ + GDMRRAI LQS A + + I + + + T IE +LK+
Sbjct: 185 GMDALIYVARGDMRRAINALQSAATI--AKDITADVIYQTTSTAKPKEIEDMLKLALNGQ 242
Query: 376 --DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQD 433
DS L+ E LI S T + DQ + + D AL+ +++ E + RL +
Sbjct: 243 FMDSRNKLD---ELLITYGLSGTDIIDQIYRSMFELGLDEDVLVALV-DRIGEADFRLTE 298
Query: 434 GASEYIQI 441
GASE IQI
Sbjct: 299 GASERIQI 306
>sp|A9A6K6|RFCS_METM6 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=rfcS PE=3 SV=1
Length = 315
Score = 200 bits (509), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/210 (45%), Positives = 132/210 (62%), Gaps = 7/210 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+ +V+ E++ L + +PH LF G PG GKT+ +A L+GD
Sbjct: 4 PWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGD 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+RE LELN+SD+RGI VIR KVK FA+ G PFK++ LDE+D++T A
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG-------DAPFKVIFLDESDALTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTMEK + RF L CNY S II P+ SRC+ FRF PL ++ L+ I E+E+
Sbjct: 117 QNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKET 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCA 243
+ + ++ ++ S GDMR+AI LQ+ A
Sbjct: 177 LTLEKGGIDAIIYVSEGDMRKAINVLQTAA 206
Score = 41.6 bits (96), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 73/155 (47%), Gaps = 27/155 (17%)
Query: 302 HDIVMLASSLSDKQKALFK--ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE 359
D+V +S+K+ + ++ ++ S GDMR+AI LQ+ A + V E+++
Sbjct: 162 EDLVENLKDISEKETLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSD---TVTEEIVY 218
Query: 360 VTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL------- 412
P +++ K+ + K++E + QL++ D MS +
Sbjct: 219 KVASKARP--DEIKKMTQLALNGKFVE-------AREQLYNLMIDWGMSGEDILIQVFRE 269
Query: 413 ------SDKQKALILEKLAECNARLQDGASEYIQI 441
S+K+K ++E + EC+ R+ +G++E IQ+
Sbjct: 270 VPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQL 304
>sp|A6VJ61|RFCS_METM7 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rfcS PE=3 SV=1
Length = 315
Score = 200 bits (508), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 132/210 (62%), Gaps = 7/210 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+ +V+ E++ L + +PH LF G PG GKT+ +A L+G+
Sbjct: 4 PWVEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGE 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+RE LELN+SD+RGI VIR KVK FA+ G PFK++ LDE+D++T A
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG-------DAPFKVIFLDESDALTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTMEK + RF L CNY S II P+ SRC+ FRF PL ++ L+ I E+E+
Sbjct: 117 QNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKEISEKEN 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCA 243
+ + ++ ++ S GDMR+AI LQ+ A
Sbjct: 177 LTLEKGGIDAIIYVSEGDMRKAINVLQTAA 206
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 27/155 (17%)
Query: 302 HDIVMLASSLSDKQKALFK--ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE 359
D+V +S+K+ + ++ ++ S GDMR+AI LQ+ A + V E+++
Sbjct: 162 EDLVENLKEISEKENLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSD---TVTEEIVY 218
Query: 360 VTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL------- 412
P +++ K+ + K++E S QL++ D MS +
Sbjct: 219 KVASKARP--DEIKKMTQLALNGKFVE-------SREQLYNLMIDWGMSGEDILIQIFRE 269
Query: 413 ------SDKQKALILEKLAECNARLQDGASEYIQI 441
S+K+K ++E + EC+ R+ +G++E IQ+
Sbjct: 270 VPNLDISEKEKVHLVEAIGECDFRIVEGSNERIQL 304
>sp|A4FZ74|RFCS_METM5 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=rfcS PE=3 SV=1
Length = 315
Score = 199 bits (505), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 95/210 (45%), Positives = 132/210 (62%), Gaps = 7/210 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+ +V+ E++ L + +PH LF G PG GKT+ +A L+G+
Sbjct: 4 PWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGE 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+RE LELN+SD+RGI VIR KVK FA+ G PFK++ LDE+D++T A
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG-------DAPFKVIFLDESDALTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTMEK + RF L CNY S II P+ SRC+ FRF PL ++ L+ I E+E+
Sbjct: 117 QNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKET 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCA 243
+ + ++ ++ S GDMR+AI LQ+ A
Sbjct: 177 LTLEKGGIDAIIYVSEGDMRKAINVLQTAA 206
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 27/154 (17%)
Query: 303 DIVMLASSLSDKQKALFK--ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 360
D+V +S+K+ + ++ ++ S GDMR+AI LQ+ A + V E+++
Sbjct: 163 DLVENLKDISEKETLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSD---TVTEEIVYK 219
Query: 361 TGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL-------- 412
P +++ K+ + K++E + QL++ D MS +
Sbjct: 220 VASKARP--DEIKKMTHLALNGKFVE-------AKEQLYNLMIDWGMSGEDILIQVFREV 270
Query: 413 -----SDKQKALILEKLAECNARLQDGASEYIQI 441
S+K+K ++E + EC+ R+ +G++E IQ+
Sbjct: 271 PNLDISEKEKVHLVEAIGECDFRIVEGSNERIQL 304
>sp|Q2NH89|RFCS_METST Replication factor C small subunit OS=Methanosphaera stadtmanae
(strain DSM 3091) GN=rfcS PE=3 SV=1
Length = 321
Score = 197 bits (500), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 93/208 (44%), Positives = 134/208 (64%), Gaps = 8/208 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+DDV+ Q+++V LK+ + LP+ +F G G GKT+ +A L G+
Sbjct: 4 PWVEKYRPQTLDDVVGQEQIVGRLKRYVEEKSLPNIMFTGFAGVGKTTCALALAKSLLGE 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+++ LELNASD RGI +R+++K+F + A G PF+I+ LDE D+MT A
Sbjct: 64 YWQQNFLELNASDARGIDTVRNEIKSFCKLKAVG--------APFRIIFLDEVDNMTKDA 115
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME TK++ F L CNY S II P+ SRC+ FRF P+ ++ RL+YI +E
Sbjct: 116 QQALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFSPIKAANIIKRLKYIASEEG 175
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQS 241
+ + ALE +V + GDMR++I LQ+
Sbjct: 176 IEAEQSALENIVYFTQGDMRKSINILQA 203
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 321 ALETLVETSGGDMRRAITCLQSCARLKGGEGI--VNEDVLEVTGVIPNPWIEKLLKVDSF 378
ALE +V + GDMR++I LQ+ + V + + I K L D
Sbjct: 182 ALENIVYFTQGDMRKSINILQASTTTENTVTEEAVYDVISRAKPKDVRKIINKALNHDFM 241
Query: 379 QVLEKYIEDLILEAYSATQLFDQFHDIV--MSASSLSDKQKAL-ILEKLAECNARLQDGA 435
+ + + +I+E S L QF+ V M+ L + + + ++E ++EC+ R+++G+
Sbjct: 242 EARDLLRDIMIIEGVSGDDLITQFYQEVAQMTQEELIPEVEFIKLMEYMSECDYRIREGS 301
Query: 436 SEYIQI 441
+ +Q+
Sbjct: 302 NPRLQL 307
>sp|Q977Z9|RFCS_THEVO Replication factor C small subunit OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=rfcS PE=3 SV=2
Length = 318
Score = 196 bits (498), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 116/298 (38%), Positives = 169/298 (56%), Gaps = 26/298 (8%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPK++ ++ + E + LK + +LPH LF G GTGKTST IA +LFG+
Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFGES 64
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMTHA 152
++E +E+NAS++ GI VIR+K+K A+ +P P FKI+ LDEAD +T
Sbjct: 65 WKENFIEMNASNENGIDVIRNKIKDIARI---------RPSNPLGFKILFLDEADQLTAE 115
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQAALRRTME +++TRF CNY S II P+ SR RF+P+ + + +L I + E
Sbjct: 116 AQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAKNE 175
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPKPWIEKLL 272
D +++E +VE SGGDMR+AI LQ+ GE I + + E+ G + KL+
Sbjct: 176 GFTIDDESMEAMVEVSGGDMRKAINVLQAV--YTSGE-ISPKKIYEIIGYASPESVNKLI 232
Query: 273 KV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMLASSLSDKQK-ALFKAL 322
++ Q+++K +I + S + H IV AS + KQK + KAL
Sbjct: 233 SRAINGLFDEARQIVDKM---MIEDGLSGIDIVKSVHSIVR-ASVVPPKQKIEIIKAL 286
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 72/141 (51%), Gaps = 21/141 (14%)
Query: 320 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---- 375
+++E +VE SGGDMR+AI LQ+ GE I + + E+ G + KL+
Sbjct: 182 ESMEAMVEVSGGDMRKAINVLQAV--YTSGE-ISPKKIYEIIGYASPESVNKLISRAING 238
Query: 376 ---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQ 432
++ Q+++K +I + S + H IV AS + KQK I++ LA+ R+
Sbjct: 239 LFDEARQIVDKM---MIEDGLSGIDIVKSVHSIV-RASVVPPKQKIEIIKALADAEFRIV 294
Query: 433 DGASEYIQ-------ILDLGS 446
+G+++ IQ I D+GS
Sbjct: 295 EGSNDRIQLDALIARIADIGS 315
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,009,736
Number of Sequences: 539616
Number of extensions: 6865373
Number of successful extensions: 22740
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 613
Number of HSP's that attempted gapping in prelim test: 21939
Number of HSP's gapped (non-prelim): 1000
length of query: 456
length of database: 191,569,459
effective HSP length: 121
effective length of query: 335
effective length of database: 126,275,923
effective search space: 42302434205
effective search space used: 42302434205
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)